<?xml version="1.0" encoding="UTF-8"?>
<uniprot xmlns="https://uniprot.org/uniprot"
 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 xsi:schemaLocation="http://uniprot.org/uniprot http://www.uniprot.org/docs/uniprot.xsd">
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FKY7</accession>
    <name>A0A6S7FKY7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055219</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000079">
        <property type="protein sequence ID" value="CAB3977922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FKY7"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="207"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="433" mass="49530" checksum="C836B9062C6A1875" modified="2020-12-02" version="1" fragment="single">MNIISGSAQAERLSTRSKPAVNIIENATGKDILISSELAILPNKLCFIWASTLDRKLRKFALPDKHRYGLKFHISRKCSHVVLLILLAGDIATNPGPTAGSRETDNSKTLWLKVLYLNARSLKAFVHPIGDKSVKVYLLKQFNHLNSEILPNYGSIFRCDRADRIGGGVLVAVKTGIQVTRRHDLEPDNTELVVTELMKSNNKPIILYTFYRPPDSKPDLLQQLNDSIQNNPESSRIVLVGDFILPSIKWSSDQKTPINIGGPAENEIFYDLVDDNFLLQYILGPTPTAGNKLDLLMCNSPEIVGDVSFKRAKPINRRVFDYGKGNFDELRNFLTRYPINVTPTDSINDDWEQWKDTFLTAVRRYIPMRTVKDKNSPPWIDKQVRQLIRKKFKALKQYRRNKSADRKRKLRSVTQQIKYLIRSKHRGYLAKIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWK0</accession>
    <name>A0A6S7FWK0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="8">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">DNA 3'-5' helicase BLM</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A041774</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020000665">
        <property type="protein sequence ID" value="CAB3983855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWK0"/>
    <dbReference type="OrthoDB" id="5985619at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd17920">
        <property type="entry name" value="DEXHc_RecQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00044542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3983855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="614" mass="69633" checksum="FD57226AC3923D00" modified="2020-12-02" version="1">MEFDEAVSNVCQLFRINKLSDFQYNAIKKITEKKNDVFINMPTGSGKSLTYEALPIVFDCLSEGSPRCEYQPKMNILIVVSPLVSLMKDQVDRLNALGIKAISLSLISSANEENDLLNGRYSIVYGSPESWLLNEKWRSMLLSNSYSNKICAVAVDEAHIIKHWGKSSSNKHAAFRECFMKLGELRSLVPTTFVVLTATATEETKQDIFEVLLMADPYVITESPNKLNITYYVSYINKYDKLNELFKWLTDELLERGVDCTRTIIYCQTITQCSTLYAVMRESLGERNFLDQNNKCMVLIEMLHSCTPEANKREILSSFQKVDGSIRVLVATISFGMGVDSKGVTNVVHFGPSKNVESYIQETGRAGRGGTHGNAFLLYSSLLLRHVDKDMKSYVKTECCRREFLLSFFEPARSVVKPSPDHLCCDSCALKCKCGLTNCGVQYCYPITSSMPNPLVIRDVSFAEREQLKNKLFSYYKGIVQSLKKSTTQEGKAKVLFAPKFLLGFSEHHILQTVEHCHKIFSYSDIYTHVEIWDEKHAVQIYKILNDVFGDLEEYTFALEENRGDNDDSNIDDEAFQQWNEIANDEELLGLVLDCSQLTLDDTFTDNSDSSVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FX51</accession>
    <name>A0A6S7FX51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000336">
        <property type="protein sequence ID" value="CAB3980919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FX51"/>
    <dbReference type="OrthoDB" id="7974547at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="24224" checksum="7340B22C0391AD7D" modified="2020-12-02" version="1">MAPGQWKSGRLHETYMGKGIRAAWAEGRDWQRELVAFLMNYRTTPNLSTGVVPAEMFYKRVIRSTVPSFSQAPANTAAKRVFKGKTKSKQYVDARRRTRKSTIKEGDTVLVKQKKKNKYTTMFRPQPYKVIKLNVRYSRVTAQRGDHVITRNVSHFKEFSGAYRETVPNPESDDDITIAAAQAGQDNDQDITEDRYPLRANRGVPPDFYGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZI7</accession>
    <name>A0A6S7FZI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085864</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bile acid:sodium symporter (BASS) (TC 2.A.28) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000416">
        <property type="protein sequence ID" value="CAB3981672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZI7"/>
    <dbReference type="OrthoDB" id="188035at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016833">
        <property type="entry name" value="Put_Na-Bile_cotransptr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18640:SF10">
        <property type="entry name" value="SODIUM_METABOLITE COTRANSPORTER BASS4, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18640">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 10 MEMBER 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13593">
        <property type="entry name" value="SBF_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="410" mass="44701" checksum="980B2B24A9BBC2F0" modified="2020-12-02" version="1">MCKGKVIAAFVSKHFLPIGTLFIIPLGILLPAPAVYLNGKLPVVQMCIVTLFFVIGTKFRLTEIQSALRCYRETALGIIVVLLLTPVVGTKLLMLPKFREVPRSGLDVEKGTLNSSWTIELPDFGPEEFRIGLQIFCVSPCASAFPTVVVTAANGNRALTLLVAITATTISVFTVPVMTSWLIPAFQAASVSFLTILPSVILFILLPLIVGRLLRFIGLVKKVVTKLYTSLKFVTSGALLVMFWVKISQATSKGDLQKFSPWMVVAVTALGTAVITSFLVLTFILASLLRLPKKSILAVTVLSSARNSSIAIAVIENLPDSVGDKDLMFFPIIFVYLAMVVIINSFGCFMAIKKEENDIEQDMDTLEDKVDSADKLTLVENPSVEQITSYNIPNTLNCITLSTVQWCTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7C3</accession>
    <name>A0A6S7G7C3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001244">
        <property type="protein sequence ID" value="CAB3987858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7C3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16619" checksum="8008F4F71E84D66C" modified="2020-12-02" version="1">MNETFSVEQDENSSIVVLGVTPVGIAKEHVSEANQLTFTSNPPATIVSNNIELAAVRCGSIIEITESICDQDPILKNPFSKNQFRNRPPSYLKRPTQDWLHHSELVHQVMKPMKHSRDAYGQFLFDLQPDLSKNIAFLLLIVQRWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEC2</accession>
    <name>A0A6S7GEC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047154</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001914">
        <property type="protein sequence ID" value="CAB3991774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEC2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="33315" checksum="8D739C4D76AF919F" modified="2020-12-02" version="1" fragment="single">PNGNRTFAHDVAAAICSLRNECKRSIPHFASSRAQTRMGNDESWQLSDERAFSPAWVNPKYPIPLTRNYNNQRRLRTAFRVYTTIGKKHLSNMHIPNLSNHTLALLPSVVLINRCITVIDMRAIPLEDHLGLWKTAWGYALNTAFDKPSRHFNLLFTVEGSGIQGIFFKLARTLHQHASHTIAPDSLKMLLKNEMSLKLIIRVADDRSRRAPRRLNSKSVAELVPNARALEWRACMTKSALESQLDISRITYWLDMKMVTHYSMTHTIRIWIQSCNISIGEPHPLLLLCQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFA5</accession>
    <name>A0A6S7GFA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008399</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001269">
        <property type="protein sequence ID" value="CAB3988029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFA5"/>
    <dbReference type="OrthoDB" id="5975103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="50" mass="5457" checksum="5E4B5703C97CEB3C" modified="2020-12-02" version="1">MASHDSASEEDLEIARILDERHSKNTTKSTKTALKAFVKAAGNVAELQDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GI96</accession>
    <name>A0A6S7GI96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070455</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001890">
        <property type="protein sequence ID" value="CAB3991638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GI96"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="416" mass="46127" checksum="FCCBFD0B805B5DEF" modified="2020-12-02" version="1">MDATGVRSYQDCLKHAWLLTGDVVARISTNRRELVLKKINPLMVSLAQEEFSETNRNLFGSGFEQRLKTRSETAETIGKVSRASNPFFSWGGLQGIPQTSWGPTRIQLQDLSPIQSQRDHVQQGEEKPRPGLISKIYKSPDLQVVPPVKNFRPDCSPKGQFDSKYTPNGTRKVFHPRMGNDHTGPLDPAGHPGLADRTCNSSSATVITQCTKAFFNTRDCVGARGKRIVDEASNSSSTIPKARGRIYKFYLCGAQEIWGKSSSSKSKIPEPVSRLRACQDGGHPHVKGSIKEGRFSRENRAQGCLPDSANLEEPPKISAISLEGHHAGVLMPSFRFGDRAKGFYQAYEPGNRGIEAKRYSRNYIFRRYPNYGRISQSSITSCSLNPESPRGARFHSKLPDVTTLVLPRDGISGVFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLT3</accession>
    <name>A0A6S7GLT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002465">
        <property type="protein sequence ID" value="CAB3994444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLT3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="9348" checksum="91A06283C2424842" modified="2020-12-02" version="1" fragment="single">CLSKTKPRLFADDTNLTTAGESINDVEAAMNSDLENLRKWLIANKLSLNVAKTEFILIGSKPLIKRISNKQPNTIIVNKPIKQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GR46</accession>
    <name>A0A6S7GR46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002392">
        <property type="protein sequence ID" value="CAB3994105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GR46"/>
    <dbReference type="OrthoDB" id="5956414at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="30601" checksum="6C88FB02994910F7" modified="2020-12-02" version="1">MDLVRRGKESGSSPISDVTQGSRHLALIDLDCCFAVSVGDSVLYLLKNTMSDHETDSEESYQTDDSDINFIPGYIMECPDLGSSDNSSSVEEDNAGLAYADEPLADDEWLQNYNRQERERLELQEKLGCNCGNCDITLLTNNSECHCCFELEGCEEAMNREEVIQDLKAEGVQNAKCVIQQPEFNPVCLQKWSLKMAADRYKTKDKSKYSQTSTENSFLRSISYREFTRLIYGLLGNRRIPLPACAYIAIRNTFPIMEKEGQFTGYSDDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GY17</accession>
    <name>A0A6S7GY17_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Mitogen-activated protein kinase kinase kinase N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A030798</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002584">
        <property type="protein sequence ID" value="CAB3995016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GY17"/>
    <dbReference type="OrthoDB" id="1043025at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000165">
        <property type="term" value="P:MAPK cascade"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045801">
        <property type="entry name" value="MEKK4_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19431">
        <property type="entry name" value="MEKK4_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mitogen-activated protein kinase kinase kinase N-terminal" evidence="2">
        <location>
            <begin position="54"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="Mitogen-activated protein kinase kinase kinase N-terminal" evidence="2">
        <location>
            <begin position="475"/>
            <end position="1103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1128"/>
            <end position="1149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="148"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3995016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1231" mass="140590" checksum="0D62444E69E4068D" modified="2020-12-02" version="1" fragment="single">MASSGGEVNNADLLSSSPLDENNFSPVFNHLTSPRNQTSESSEKSDNSLSDVEENVPREFELSEQYGRTPPSSRTFTKPSKERTRSTRRKKDKPGSEFRSSPSTSWRRRQSASATSSERAFNRSMKEEESSVILVNGGEETPFKPRNRSLTESSLSRKPSQRKFQSIRYREPALNVVNSVHFKENKAAVCPLERVKFYETMNMLVNLGGNTEGKENSVEETENYEIEELREALWLELQAWRSSTTMLNQDEWLMNERRKINTILDNVIYFNVDKTQQVNFDVLFSDSETDSEDDDDEGCCVLHPIYSFVERSPSVDSETNDLAYYTEPKLSTSSDLSGTISTDEDTYKLSDFAQTIKTAVKQVSSTLDKLYSVEQLYPSRGALSKDFEKYTSKEFQASCDTLVLWLNQIKGLYHKLHVMSWLVHVDFDDEKVWKDWIDLGINLNCLKTYNSCRNCQDLSSHCDFEMLESCESLKRGLSSENTSTSRYRPFVDQTIKKMGVANLGYKLHQLIHMELTRASFILQVDKTTNVFLKHQRLHLLYKKMLIKKIESFMYDPEDKETYNQTYGVPIENWIERFEKMGLPSFDSLYVFLVLLVMDIYHECLRMRMEHRPKGEPSSLSVRQLLEECKEVLLAAVVVRQYFLDALEGLGKDLSSCPQFEERVLEFDQDIQKMLEVYFEYLHQYMHILQRLSEASCGVKNILEEEWEFVREITPYIRGGEVQAGKRFCVMARGLVESTADFLSTGMDEYFSGLHDLDDNEKHWVKVLQSCRDFKKLFQETRERSIKALAFVKRLRSDLGVAATFNVNVPYSELLEQLKASGYIQVVTKLNICALMFVRRSLKESRRCIIELLNACCGLHSQSSACAKGMDNYIVLLSKKNTEGCQWTGDKINVTPALDASLGLVDIQVDELAMVACTSCALNIHINMLKAHMGEAVTCASGSTSCHLDLIDMKTQISDSLVNLRTKICDALHGAVENLDVEKMYDIEENERSRLNSSTLEALQFAFNAVFDFHREMRRIPESDEASLSIVGKYYLELASKWMNFVSKRCEKGKGSRPRWAGQGLKFLIEACHPTISCRLSNEEFQKLQHEINRCVDHVVGSADNLLNSSSPTAGGAWSPNTRFSRSSTFPGTHSHIHPSRTISEPGRPNIKRANTLGNDAGEDRVDSGVEVPQRRIVRVRDGVALLEYTRHVKMLDKGVIGRVSNKKRDLAGELAFIPKRVPFKWQRGNKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZZ5</accession>
    <name>A0A6S7GZZ5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A040832</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020003037">
        <property type="protein sequence ID" value="CAB3997155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZZ5"/>
    <dbReference type="OrthoDB" id="5961870at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3997155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="234" mass="26810" checksum="CCB9B40DE0342A6C" modified="2020-12-02" version="1">MWVTLELEKALEKGYKLVRINEVWHFPEHTDGLFKDYIDTFLKIKQEASGFPLECDTDEKKGQYIADYAAKEGKFAQWPNMTKVKIISDPAKYFDLLSSDQINVTVVNFIDDELIEVHFENIDEFMEADGKTNVVIVAFTTAHARLKLYGVLEQLNRRVLYFDTDSVIYVSKEGEWEPPTGSYLGELTDELDGAHITTFVSGGPKNYAYEMSTDETVYKVRGITLNYRTAQKIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0C1</accession>
    <name>A0A6S7H0C1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="18">Volume-regulated anion channel subunit LRRC8A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A002061</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>chloride(in) = chloride(out)</text>
            <dbReference type="Rhea" id="RHEA:29823"/>
            <dbReference type="ChEBI" id="CHEBI:17996"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>iodide(out) = iodide(in)</text>
            <dbReference type="Rhea" id="RHEA:66324"/>
            <dbReference type="ChEBI" id="CHEBI:16382"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>taurine(out) = taurine(in)</text>
            <dbReference type="Rhea" id="RHEA:66328"/>
            <dbReference type="ChEBI" id="CHEBI:507393"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the LRRC8 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 17">Belongs to the peptidase C14A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003235">
        <property type="protein sequence ID" value="CAB3997953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0C1"/>
    <dbReference type="OrthoDB" id="5967614at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004197">
        <property type="term" value="F:cysteine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029030">
        <property type="entry name" value="Caspase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052039">
        <property type="entry name" value="Caspase-related_regulators"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033139">
        <property type="entry name" value="Caspase_cys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021040">
        <property type="entry name" value="LRRC8_Pannexin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011600">
        <property type="entry name" value="Pept_C14_caspase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002138">
        <property type="entry name" value="Pept_C14_p10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001309">
        <property type="entry name" value="Pept_C14_p20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015917">
        <property type="entry name" value="Pept_C14A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22576:SF41">
        <property type="entry name" value="CASPASE 14, APOPTOSIS-RELATED CYSTEINE PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22576">
        <property type="entry name" value="MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12534">
        <property type="entry name" value="Pannexin_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00656">
        <property type="entry name" value="Peptidase_C14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00376">
        <property type="entry name" value="IL1BCENZYME"/>
    </dbReference>
    <dbReference type="SMART" id="SM00115">
        <property type="entry name" value="CASc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52129">
        <property type="entry name" value="Caspase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01122">
        <property type="entry name" value="CASPASE_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50207">
        <property type="entry name" value="CASPASE_P10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50208">
        <property type="entry name" value="CASPASE_P20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="13" id="KW-0407">Ion channel</keyword>
    <keyword evidence="10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00024145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00024158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00024167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU003971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB3997953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="894" mass="101132" checksum="2841CBEF4EBD6E73" modified="2020-12-02" version="1">MGRHYLVVFLAVLSIVFAGMQVTSGSFECLAAVDCPGISRSNMSSSLLSHIKYHNACKAFYSSQKTNIIKRTDVVTDLKSSFQYTNFVNSQCSKSTIPDFLSYFWFVLFIQAFVLIVLDNLWLKLPNTASVIENFVALVMECYASPCPNLALTQALSDIPGRRYADDQQRDGNNFEMTNPTTDNDQSCEFNILEDPATISSVKALCEKVHTLEENVKSSHKLVKIWQLYLLQSIFQVSFAIIFFTVDIYYMKDLQETMICTLTQHIPVSHDYFICSHSLAPAFALGLKWLYLPTLGVALAIFIFITAWTFSRKGKSEFKYNFEERRLPRLVGIELSDIPPVNEDFGFLLHLLHSYNKLYVVRFAHFLSKRNKKKIQTFSLKKEYPVSNLERQLKENGNKLTFIGIQGIPETIFNLATEIVTLEFIECRLENDDFENFYQLTSLRKLSIVKCRLKSIPDGILNIECLEVLNLKGNVLTSVNRSISNLRNLTTLDLSNNNLEAIESESFENLGNLLAVYLSGNSKLQMAALKVVLACQRLRILDSPRHLADRKHELNQLERSKFDAVNFAGKGNVVIPYTPEDAPHIDLEDHEKIYKMDSHPKGIAIIINNYSYQKASLENRTGSEKDVFMLKLLFEKIGFDTVCCIDYKAKQAKDFLEECAENTKYKECDCIAVVIMCHGFEEGLIFSDGEVIPVMDLVKSVEKSPLYQEKPKLFFIQACRGSYHAGGPANLAPRSYVLVPNSHDNVPSASNRNTIHSTLHDAVADGFLPSAAKSKNTTIEASSPHVMIEPPSIPEGADILLSYSTMDGYVSLRNIEFGSWYVQALVETFSEHAWEEDILSLLTLVNYKVARACSQAGWRQVPAPQSTLRKKLYLLPGYPSQPKPIEPQQRNTYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0T4</accession>
    <name>A0A6S7H0T4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A076462</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003099">
        <property type="protein sequence ID" value="CAB3997445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1667110at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054294">
        <property type="entry name" value="DUF7030"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054503">
        <property type="entry name" value="KDM3AB_Tudor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054504">
        <property type="entry name" value="PWWP_KDM3B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22989">
        <property type="entry name" value="DUF7030"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22988">
        <property type="entry name" value="PWWP_KDM3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22987">
        <property type="entry name" value="Tudor_KDM3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7030" evidence="4">
        <location>
            <begin position="27"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="Lysine-specific demethylase 3B PWWP" evidence="3">
        <location>
            <begin position="99"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="Lysine-specific demethylase 3A/B tudor" evidence="2">
        <location>
            <begin position="199"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="332"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="400"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="472"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="549"/>
            <end position="611"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="777"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="850"/>
            <end position="908"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="924"/>
            <end position="952"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1026"/>
            <end position="1076"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1165"/>
            <end position="1223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1345"/>
            <end position="1420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1441"/>
            <end position="1466"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1503"/>
            <end position="1542"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1694"/>
            <end position="1783"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1806"/>
            <end position="1825"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1839"/>
            <end position="1865"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1877"/>
            <end position="1976"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1988"/>
            <end position="2023"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="2059"/>
            <end position="2090"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="2103"/>
            <end position="2180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="343"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="408"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="428"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="472"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="488"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="549"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="599"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="785"/>
            <end position="796"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="855"/>
            <end position="871"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="872"/>
            <end position="891"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="935"/>
            <end position="952"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1036"/>
            <end position="1073"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1202"/>
            <end position="1213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1350"/>
            <end position="1366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1367"/>
            <end position="1392"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1401"/>
            <end position="1410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1505"/>
            <end position="1516"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1517"/>
            <end position="1534"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1696"/>
            <end position="1751"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1754"/>
            <end position="1763"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1764"/>
            <end position="1777"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1806"/>
            <end position="1822"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1842"/>
            <end position="1853"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1879"/>
            <end position="1888"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1925"/>
            <end position="1941"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1996"/>
            <end position="2009"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="2115"/>
            <end position="2124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="2142"/>
            <end position="2153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="2157"/>
            <end position="2170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF22989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3997445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2266" mass="252134" checksum="D3C17FB397511FA5" modified="2020-12-02" version="1" fragment="single">MSRNDERASKEMYEQRTAMLHFPIRQELVGKRFIVITEEATRRGAKNQGLENYSWKQGYIRACSVKDILDKELQVLVEFDGASWEYRQWIKIYEQTKAFFVESTVVWATRIYRGSNTHRSTISWPALIFVPIVDYMGFDKDSKHPVEYFGDKQLAFLKENEVGLFKDSEESLNQVFCINALVQEDLLGWQRLQKTQACLMKGAETLTGARVTVYRLELRQWYTGCITAHNLTTRELHVMDDNVLQTHPVDPALVQINLMANDDELLRILHGEQSKMLPTRRQRNAQIYFQANCPEQKPQAGVTNWHVVRDLNAPKPGWSRPSVVRTVSHGKPAFVPSVGQDLDGSQETSPQSFPKQNDPASSSRQKNDGKTSGSHSTTKVKVHKPIPVVLKLQDTLPFPHYAPQPARSSTSPLLSSLNSTPSPLRAQLTPSPLSGQHTPSPQSLSNQTPPQNSRNESPFNIALCDQSSARVAAEKELARTRNHENYRTNHNSQSTPMTSSRKSSVIETADKVNSRLVPSPSISSHPMQLFATNTEGGNCPNFTLTIETTRKTPPQITTGVIPSESPSDENPVRNSSPESEAPLTALAESSRNFVPGVKTQRKKKKPRTKAAPIAKVIHPTVVIDDAPSQSTVETTTPQRSTNNLQNTVISTERGHSSRMENERARNSCRMESGVTQNVHTNPIITQTKNMQARGTQFSNTQERSLFTEIQCEYLRVMEALVRFQYSMIIEAYDTINQTRTEEQRFSVTDTFCKFIEQNRHTGNIFCEASFARQERQRVEHERHMSQGTAASPNRVTSCLPEEIERRLRSAEEAVDRGRKEVISVVLPFEERQQKKGQYMEWEVLKQQLQKQQKASHNEKIQKHHHVEEKTQPARQGQAEAQKQNHLQGQQQRQDKAQHHSLPGVFPLYSDSSGQVELLKEIEQQLKQARAPEEPQQASRTQPSVMQSPPQQANPLLHASRSQLLRTPENFQQLQQLLLQRTQLYEQQRYEEVQRKRVNELLQVKDVEQKTILLQNIVDALETQKASSRDVLKSPPAINSNFGNRSTESQLTKVQTKQSQLAAPSEVNPAQAQQHIPKPPFLSADQLLSSLTTSAACRVTENLAIAPGLISENQPTAGNTQVSGNSEKSNLALVMKKENPGIYLLSGSTPIIPDITSCVDMLGEAGSKKDKLGSAKASKNKSSDKKRKTSSLLTPGDSETLPKPKRQRKSTKKKNVSDIASQDIASSGPLPGCVSIKQERLPVKSVPPGKVLPVAMTSGDRNVTPVKANDDQFSHAQYQPRSITKGIGFIPINTVHEVGSTVTNASVTSKASDSLDVLASVSASRSVQETQDVRRPAVTSVIQSCIGKNRLPHDGSRQFADENRRSSDSNPQLGKTNRQLFDDFPTSTNGNRQLTDEKQQHTSDPSKSTNAARLGSESVPIFADTTQVTEVGVCHTTTDGSQMFSDGKQSHNECNQPATERSVERNIGEEDVQCGVKDRTDPISDQLVKIQIAPNPSHLVKDKSVDISSVGLNGSVNKTKKPRKERQKKERKKKIQGPGSAVETTFKTKDVGSNILQEMSRLYLFKGEQNIGENKSNEVLCEPVRQLSSTRDDENKAKLTSQNVNALSLDHGGQNDGNAATIKSADIKMKETDEAPELSTLKNVVFGSLKNSDIPKKSAEMEAQDSSKPVDPTFAVISQNIQALNLDYSETSLYNKSTDETPKVKQKKKEISSGKKSGKKESKSKPDGSKTKKTSEKKPKTPRGNKQEKESVAKSGKKSSKVKHDKVLTKLKEIDNKQPDFGNISANVDTVQLSLGSEETTTLKLSVNENNATKLPATTSSDGECSDNKVIVNSLEQLSVSAKESKKSDEKAADNKSTQPVDDTEDVCSILFKSQNSELESLRNNKDDNTTVENTLEIAGKVNVAEAPKKQKKKKTDLSKPQTKKSASEKAKKKPAKDEKITKNNKKASKKSEKNNIKSLENNSITVKSENEKGTACVAKDSVMAVDEFVSSAADESEQKRLVQEQGKEQAEEETNSVTPELASTDAVVKANGIEKRRESEDIVFVNDKSVGNFVNAREEEESVFSESLLSRKRKRCTSLERNDSVVSESSDVESCVPVVCNETAATESNQASSRKSSENGEKKESKIRKKKVKKENETKNESAITLETDTSALDGSMKQDEKKESGAEAKKKVKKPKEKKVREKIQKEEWVYFLQRGGCKALPSMPQCRECRNYETEEEAVLNKSCCRFHMFRRCRSKSNRLEMAGFSSSEHAQGDDLLPWIAGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4J5</accession>
    <name>A0A6S7H4J5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Metalloendopeptidase</fullName>
            <ecNumber evidence="10">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A048061</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="9 10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9 10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020003188">
        <property type="protein sequence ID" value="CAB3997792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4J5"/>
    <dbReference type="OrthoDB" id="291007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd04280">
        <property type="entry name" value="ZnMc_astacin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000005">
        <property type="entry name" value="Procollagen C-endopeptidase enhancer 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000001">
        <property type="entry name" value="semaphorin-5A isoform X1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034035">
        <property type="entry name" value="Astacin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001506">
        <property type="entry name" value="Peptidase_M12A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10127">
        <property type="entry name" value="DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10127:SF893">
        <property type="entry name" value="METALLOENDOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01400">
        <property type="entry name" value="Astacin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00090">
        <property type="entry name" value="TSP_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00480">
        <property type="entry name" value="ASTACIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01705">
        <property type="entry name" value="TSP1REPEAT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00209">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51864">
        <property type="entry name" value="ASTACIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3 9 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9 10" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 9 10" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0732">Signal</keyword>
    <keyword evidence="4 9 10" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5040558158" description="Metalloendopeptidase" evidence="10">
        <location>
            <begin position="23"/>
            <end position="865"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3997792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="865" mass="98927" checksum="EC5EFAE8B1CBF66C" modified="2020-12-02" version="1">MVYKLLWFICVVLQCGSLFANGKKQLVAMDRIILANIGKERLMNVHKFDIRLPPFRSGAGEGELDAAARDERKLWTKGVIPYIIHKTILDRSMFKTNLEKAIKEWKKYTCIKFRKKKSKDRDYVIFMYGVGCNADVGRKGGRQYVSLGRGCSDTSVIIHELGHVAGFWHEQNRPDRGRYVDIMWNNIIPDYRFAFDKYNKIRINSRNVTYDFKSIMHYGNYAFSSNRKATIVAKNSNVKDFGNIHLSPLDIKQANLVYNCPVKQTKFPKFPKDFKFSAQTIPGKHCVLLNEPKEKQQEPVYLCHNNTKKDAAISWSHAGKTTSLDCTHITSPYGEDRLGWWNDNYLCVANDSVYKFHWSENGPIAGLGCLGWPTKNESAGSKAFLCAKFFDGPIDGGWTAWSSWTRCNRVCGGGYQVQRRYCTNPVPKNYGKPCYGLDYNRRFCNVQKCSEPPIWPDDFMFKQFSHTPYDHNCVRVYERRAELTWKNYYFCSVGSKQRINMKWSDMGTQRGMRCLKVNEPQESSGWNDNYLCLPADSEYRFQWSHSGPIRGLACIKWFARNGSNGWNDNYLCGQQRQKVAAFAAVVKEAPPQATEDSSSTVAIHGAWSTWSSWSRCSKSCGQGYQRRNRTCNNPTPAKGGRPCPNGRMEAKRCLVTACPTSCHAVFTKNQGKLTSPQYPNYPQNSRCQWIIRMEKGKKIKVKFTYIRLKANRSRCSTDNIIVRNGENGKAPILKLFCSNKNSPVIVQSSGNVVTLQLRTSNNLRTGGFKAEWTSTNIRKEVPCGKLFTGNSGSFTSPLYPQKYPNKKECTWEIRVPLDRLLQVKFQDFNLEKHSKCSYDKVEIYDGGTLKSPKRTFCGDQNPGKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H5E1</accession>
    <name>A0A6S7H5E1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003236">
        <property type="protein sequence ID" value="CAB3997959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H5E1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="40361" checksum="0247A45E7CE24815" modified="2020-12-02" version="1">MSANLRLSWAGDFDRLKEFVKSDLELQGSWSSPANEKKLFVSDNVELLWWKNKKFLKINGEDANRIKRCMINAMFTSLNLDSIKSGVDMATNTENSLNENQPTKHQCTGCECSKLSPDLEGWKLDLVVLESKLNHKIQAVENQILRMNDCRPKEPKNHANLENMLTTSTPISSGGTNKTKEVSNSNPHINPVVVRTANDACFTPIKVPDNTETFMAIDQSCEKTSHHDLVPLPKSINHSQEELTLTKVVFPVRNNSEQSKIGELSHTGSRTNPIQKEQSCHYNVPGRQSCSSYLHDRGQQFRSIPVRITHRPLPVNPEKVNKHRRAYRSQVFRHRHQTDWLRHLELVRKVIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7F7</accession>
    <name>A0A6S7H7F7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">F-box LRR-repeat 20-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044582</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003894">
        <property type="protein sequence ID" value="CAB4000684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7F7"/>
    <dbReference type="OrthoDB" id="10257471at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050648">
        <property type="entry name" value="F-box_LRR-repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057207">
        <property type="entry name" value="FBXL15_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006553">
        <property type="entry name" value="Leu-rich_rpt_Cys-con_subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13382">
        <property type="entry name" value="MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25372">
        <property type="entry name" value="DUF7885"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00367">
        <property type="entry name" value="LRR_CC"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="F-box/LRR-repeat protein 15-like leucin rich repeat" evidence="2">
        <location>
            <begin position="9"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4000684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19327" checksum="EBA4A9373EE5FA7D" modified="2020-12-02" version="1" fragment="single">LNAILKISRHLKVVRLDECWICTTEENLFTLANNCPKLRVLSVRRCKYVTDDAIRKLCECCNELQELDVSSCYKISDKGLSNLILCKNLRELRVSSCYGVTDRSIKKLIRHCSKLVELDVGGCPRITDSGLQTLLEKPCGQLLRIKSCENVTNDMIWKLVMAGITVNNMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H956</accession>
    <name>A0A6S7H956_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059198</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004070">
        <property type="protein sequence ID" value="CAB4001374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H956"/>
    <dbReference type="OrthoDB" id="10068383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="16246" checksum="8C99E6238B2BD4EE" modified="2020-12-02" version="1">MPKKNLEYEIYIFRQARQTTDETLDQYHTRLRKLATTCEFTDADREIKTQIIQSCVSTRLRRKALRDSTLTLSALLAEGRSVEVSEKQAKGIEKSLAAIKIDEKPPTEIDDSVNVIQHQQRQQPPYARREAVERKCYYSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HAF7</accession>
    <name>A0A6S7HAF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">5-hydroxytryptamine receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A071350</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004212">
        <property type="protein sequence ID" value="CAB4001934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HAF7"/>
    <dbReference type="OrthoDB" id="10034726at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030425">
        <property type="term" value="C:dendrite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045202">
        <property type="term" value="C:synapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004993">
        <property type="term" value="F:G protein-coupled serotonin receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030594">
        <property type="term" value="F:neurotransmitter receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007268">
        <property type="term" value="P:chemical synaptic transmission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007187">
        <property type="term" value="P:G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24247">
        <property type="entry name" value="5-HYDROXYTRYPTAMINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24247:SF202">
        <property type="entry name" value="5-HYDROXYTRYPTAMINE RECEPTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4001934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="36831" checksum="C96E4B7D307EE5A4" modified="2020-12-02" version="1">MAMDHCEIYDFHEIIDHLSVKVRVILILIIIFAILGNTLVLIATWKEKNLHEPNKYFVACLAVADLLVGMILVPLRLYQLVNKENGGITSIHLCRFYIWLDVFLGTSSIYALTFVSFDRYLKISKPLQYKSRMTISTSLKIVFIIWLIAATYATLAMFPYADSPGIVISTGGCFSINKIFYTFAAVSAFFLPTTIMLVMYTLISLVARKQQKILRNGELSQTYDKPNQRSALLQDLKVIHMLFVVVGVFLFCWVTNYYNPSLLFFTSWTLSDLYLITILHRLVDTSPFACLHQKYKEAFKHLFQRMMCRPSSRRREPPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCM6</accession>
    <name>A0A6S7HCM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nematogalectin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011788</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002289">
        <property type="protein sequence ID" value="CAB3993591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCM6"/>
    <dbReference type="OrthoDB" id="5970528at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008160">
        <property type="entry name" value="Collagen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000922">
        <property type="entry name" value="Lectin_gal-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043159">
        <property type="entry name" value="Lectin_gal-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46780">
        <property type="entry name" value="PROTEIN EVA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01391">
        <property type="entry name" value="Collagen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02140">
        <property type="entry name" value="SUEL_Lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="34263" checksum="AB30E414151CDFFD" modified="2020-12-02" version="1">MEIFNRRTTNIVKRPEVTASKRQPRTVFGFFLFGGKIKPSEAFDTSTFDTLRLGDEITSDMLEQIRALQAILNQPISLGLLVRGGEGPPGPPGSSGKTGGRGTVGDQGPVGENGSAGLEGRFGKTGSPGPPGEPGAPGYQRTYGAVNYANYARDYGVTDDQSYTNAQQQNYNTDQSLSGKTQIICEDKRLWVGCNQNEKINITNAFWGRDDFITCSQDAPSNHSVRQYSLDNNDHVVMKIKEICDWRPTCELYATRLFLDDVTNSQVYKYLRVVYECVPNAYDKGNFGEHQENWEEKLSRNDTALWTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJU1</accession>
    <name>A0A6S7HJU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082658</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004633">
        <property type="protein sequence ID" value="CAB4003450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJU1"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="15748" checksum="274C487D92D74355" modified="2020-12-02" version="1">MAPEILVKSCCLKSASLDDLKKVDVWALGMVMFNLVNPDLKQPFQLDLVRDASAIEQVEEFLRLGKQSSGSNKYKTLQETTWLPIAKVHRNCTVVDPIKRPAALEVLQIFQSLVCSKIEENVAAGRNEDCEEEEDGSLNGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKC3</accession>
    <name>A0A6S7HKC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA exonuclease 1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A052351</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the REXO1/REXO3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005121">
        <property type="protein sequence ID" value="CAB4005196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HKC3"/>
    <dbReference type="OrthoDB" id="6021713at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047021">
        <property type="entry name" value="REXO1/3/4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12801:SF115">
        <property type="entry name" value="FI18136P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12801">
        <property type="entry name" value="RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4005196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12678" checksum="98778C083EB182FC" modified="2020-12-02" version="1">MIGVTMSLRDVQSVLLSMFYEDTILLGHSLESDLRSLKIIHSTVVDTAIVFPHRLGLPYKRALKTLMAEFARKIIQDSEEGHDSLEDAVSCVELMMWRIKEDMKIKERKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQU2</accession>
    <name>A0A6S7HQU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A018103</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003046">
        <property type="protein sequence ID" value="CAB3997191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQU2"/>
    <dbReference type="OrthoDB" id="1630758at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="662"/>
            <end position="754"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="677"/>
            <end position="728"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="736"/>
            <end position="754"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3997191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1045" mass="116697" checksum="FBD1CD610380D953" modified="2020-12-02" version="1">MANLYQQFQLQRCGHASRGCTSIVRHEALLSHLMECGFAPVQCSHEGCGKTVNRQDLVSHQQNCEFRSVTCEDCHETMRQGDYRKHSCVLLRELADVRGLLREIQGGQLRAGIQPYATQGQQSVNLRQQTSETIQPIAAQGRELIQVEATQMQQIVTRRLTSELMRQPNATPTGPYISPGIFRAACSISSPIQSQPTIDKQILVAGGGHKSYEIFNWSTQKWTLYEDTLFFDHNNAFSFLYDNKIMICGGTHTNRVECLHITNNRSLSTFPAQLPGTDCGKGVLCGDKILTFGQSVSATSLKPPFKTTVLASYNEGGKMACGNGVARVNENTVVLVGGYYQRSRGYSVELKDDVLLYNMTTKQIEELAPLPYQLSDMAVVVRNDNIIILGGKKNQYDVCNDVLMYNIISQQCSRLPSMLEKRLRCAAVIMGDTIIVMGGNSVDGITAMMALPERPAIPITVEYLTCCCIAMASASSTQNDSNTAYFDHFTCNLCFEVLQEPVQCVRNEHYFCKKCITKHLTRSQTCPVCQNALTPETLRPISRIVANLLQQFHSPRCRYASRGCTSAVRHEALLSHHEECGFAPVQCSHEGCQATVDRQDLVSHQQSCEFRSITCEDCHKSMRQQEYEKHGCVLRKELNENKRGLVEMQKILREIQDEQRQQGVEMRQMAKDLRQPRATQGQQSGNLEQQASELKQPSGTQRQQSGNLGQHASETILPNSSQSDNTWQQERELGQPSATQPQQANNCVPTQSQAPSDRQIFVSCGRSSHEIFNWSTQQWSLHNHPLFFDHIDGFLFVYDNKMMICGGTDTNRVECLDITNNRPASTFPAQLPAIQCGKGVLCGDKILTFGESVSGTSLKPEFETTVLVPYEDGRKLSSYGVACVNENAVVIVGGYYEYPKSPNRPYPYGYRVLKEDVLLYNPTTNVLKKLAPLPYQLSDMAVVVQDDNIIILGGHQQFSPCNDVLKYNITNQQCSRLPSMLEKRPRCAAVIMGDTIIAIGGSTKDRRSNDVAIKTAECLVLGEDTWKELPQMHFGRYGATACLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HW02</accession>
    <name>A0A6S7HW02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107336737</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084571</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006237">
        <property type="protein sequence ID" value="CAB4008817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HW02"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="249"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="185"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="250"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="269"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="33990" checksum="0F1316B26E8907AD" modified="2020-12-02" version="1">MVEEQAESQPLQQPAVQIMQSVTITPMPEFCPDAKIGTSLSTRWNNWQSDFEMYITASGITDPKRKRALLLYQAGPRVREIFKQIPETGTDTDYNIAKQKLKAYFDPQKNRRYEVYCFRQTTQEHNETLDQFHTKLRTISETCEFADVEFEIEEQIIIGGNSSKIRKGGPQGRGDEQSKYQAKQIESKEQTDGEANKLEQKPNNGNISNSSNVICRNCGRAYPHTGACPAKGKTCNNCGKPNRFAAVCRGKQKQTRSPRYSNKKHAQRNLKTLDTGSNSSSDEDYLYTMTNTKPYDKAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I0A5</accession>
    <name>A0A6S7I0A5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088269</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007042">
        <property type="protein sequence ID" value="CAB4011146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I0A5"/>
    <dbReference type="OrthoDB" id="5968829at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013694">
        <property type="entry name" value="VIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45737">
        <property type="entry name" value="VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45737:SF6">
        <property type="entry name" value="VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08487">
        <property type="entry name" value="VIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13768">
        <property type="entry name" value="VWA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00609">
        <property type="entry name" value="VIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51468">
        <property type="entry name" value="VIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="796" mass="86235" checksum="F73B456A9B0B9FAD" modified="2020-12-02" version="1">MLLEGLFICGQNEAIPLKSLSVRAFLQGYVVGFRSTLTYDNNTSNPLEVFFRTPVDDSYAVVGLEACIDGRKIRAEIQEKDKAREMYQEAISRGRTAAFGEEKKGDIFSLVLGNLPPGEKAVIQLTMVGELAVEPDGAVRFVLPTVLKPRYTPPGSTDPLAPESPTSGSGPVHHATGPPEYKFDMVINGAPGIAKVTSPSHEICVENNGQNINVSLAEDKQTDIVILVQPKEAHKPLVIIEPCLSNGENDFQKNTVVMVSFFPEFKGDTSCLQAACEFVFVIDRSGSMRGSYIQDASQTLLLFLKSIPEGCYFNVIGFGSSYVHLFPESVAYNQKNLEIAVKHAKNLQADLGGTELFDPLKDIFSHAPMKGLPRQVFVLTDGSIGNTESVIKLVAKNSNDSRCFSFGIGSGASSTLVKGIAEAGMGAAEFITSGERMQAKVIRSLKKAMQPAVTDTKVSYTVPDGVTVTTVPKSSLPAIFIGERLIVYAILHQSSPPTEVQEGSICLSGDLLGAKVEHNMKFQIPAAVTREHMLQVSTIHHLAAKKLIKEMELDLESGQTNSYIIQLSCDANVISSQTAFIAIDEERKEAVKGSLETWDIPQDDEWCGHSALPAVACFSLPSGGGGCVTVGASAPRSKKKSFGFSISKMSNRRANKYSASAPLDRERHRAKSAGFGGGFAEDQNISTKESTPTSPLTSIINLQLASGAWKMSAEMADVMAKSTAEMKNACPVRCEGDMETIWATVIVLMYLQIRQSNFRDEWELIAGKAQTWLTKQNLPEGCSIQVLREKAMAFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG13</accession>
    <name>A0A6S7IG13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049579</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009184">
        <property type="protein sequence ID" value="CAB4016606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG13"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008160">
        <property type="entry name" value="Collagen"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24637">
        <property type="entry name" value="COLLAGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24637:SF428">
        <property type="entry name" value="SCAVENGER RECEPTOR CLASS A MEMBER 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01391">
        <property type="entry name" value="Collagen"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="55"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="82"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="101"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="16736" checksum="307EC1B6AEEEEBE8" modified="2020-12-02" version="1">MHFICNDLGFFAADDQDVSKISKRRWGRRRHWRRRGSPGARGPPGPKGPKGDRGSPGSRGPAGSPGSKGPPGPSGSKGDRGSPGSRGPAGPLGSKGPPGPRGSQGDRGSPGSRGPAGPSGPKGSTGPKGSKGDRGYRGSSGVDGRRGPPGPKGKTLENAYAWTVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG67</accession>
    <name>A0A6S7IG67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008982">
        <property type="protein sequence ID" value="CAB4016123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG67"/>
    <dbReference type="OrthoDB" id="5977580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22366" checksum="AE6DD5FDC7FF9D52" modified="2020-12-02" version="1" fragment="single">MSLFIQTKPPSTYNCKGLDGAVMIHCLPTAAASTFDEYVDKVFIPYLEKQLQESRRKELFGFLTTKVEQFNCPASTAMYVTSGQSVLSISSGSPMHSCNHKEADTRVVVHILHALEHREKTVLVHTVDTDVVVNLVGTFHNLAAVQTLLDIWVAFGTGKNYRFYSINAICASLGEPRSCTLHVFHTFLGCDTTWQAFEDVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INC3</accession>
    <name>A0A6S7INC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A053868</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010349">
        <property type="protein sequence ID" value="CAB4019206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INC3"/>
    <dbReference type="OrthoDB" id="9950531at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF23">
        <property type="entry name" value="ZINC FINGER MYM-TYPE PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="2">
        <location>
            <begin position="286"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="566" mass="62750" checksum="2C93360CE6A40E97" modified="2020-12-02" version="1">MALDDVQQYLHHDCIEITGVLLCGDSGVCYRRAIGSMSSQGGRGGGRDRDKNHKYESGAAKRKAKLERVVQESKVLSKVPKISTLFFPKTSGGNIGDNATGCSAQALRNPVESAVNNTATIATIVTDSVPEQSDETLTITSDLSGDPSTDAYSCDLGMWPPYVSDSMRKYWVAKGSSECRNLDADFSPSSSKFEGDNYKRQCQKSLFTYTHELTKQQHPQSWLCYSPSKHAVFCFACKLMNDSNVFGKLGYKDWKHASNKIPCHEKSALHLEAIIQLLQRSDAGCCVHVELRGLPFRGSNEIVGSPRNGNYLGTLELLAIFDPFLVQHIKRNTNKGRGHTSYLSKTICDEFIYLLANRVHEYIVTEVKSAKYYSVSVDSTPDISHVDQLTCILRYVLPSGPVEQYLTFLQGHTGKELAESLLKFLKAHDIAIADCRGQSYNNASNMSGKYNGMQAIIRHQCNLAEYVHCATHSLNLVGQTAVGCCTLAIGFFRFLQGLYSFFSASPHRWKVLMDQLSSEGLPTVKRMSDTRWSARADAIKALVKGYDEINDALVEIADDEEEKAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPS2</accession>
    <name>A0A6S7IPS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cell cycle checkpoint RAD17</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A078117</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the rad17/RAD24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010267">
        <property type="protein sequence ID" value="CAB4019029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPS2"/>
    <dbReference type="OrthoDB" id="10265971at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003689">
        <property type="term" value="F:DNA clamp loader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000077">
        <property type="term" value="P:DNA damage checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033314">
        <property type="term" value="P:mitotic DNA replication checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001661">
        <property type="entry name" value="RAD17 checkpoint clamp loader component"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004582">
        <property type="entry name" value="Checkpoint_prot_Rad17_Rad24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12172">
        <property type="entry name" value="CELL CYCLE CHECKPOINT PROTEIN RAD17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12172:SF0">
        <property type="entry name" value="CELL CYCLE CHECKPOINT PROTEIN RAD17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03215">
        <property type="entry name" value="Rad17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="46"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="341"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="46"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="362"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4019029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="454" mass="51444" checksum="3CAEB6A9D71D94B7" modified="2020-12-02" version="1" fragment="single">PEKKKKPANGNDKEAKKLKSSQQESERKKKQQWVLSSFDDFDVSTSHVLATNKNPKPQQSHLKKKSSKTDKPRVPINSNDLWCDKYSPSSEADLAVHKKKVAEVRDWLLSHLCLQSGNGVLLLTGPPGSGKTATLRALAKEIGVEIQEWVNPLVQNKEDDFDNSEWKTYEGVVYRQSQLKNFRDFFLRANKYSCLSLGVSNVGQDKKIVLVEDLPNVFYRKATELHEIIGSYQRRSRNPVVFIVSDSNSNDTNAYRLFPKDIIHELGIVQISFNPASVTSLNKLAKEIISTESKKKRASFQNPSKEVIDNLVSGCNGDIRGLINNLQFTCLKGSSTTFQKLKHMKQSQAGREKSGKQRSSKKSTNSESTTPSTIGGKDTSLFLFRVLGKVLYCKREETSNTTESSLPEHLKQHERLPLIENPENIFEKSHMSGEYLNLYLHQNYLDFYNNIDDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J0E1</accession>
    <name>A0A6S7J0E1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-coumarate-- ligase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080482</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012343">
        <property type="protein sequence ID" value="CAB4023150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J0E1"/>
    <dbReference type="OrthoDB" id="10253869at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016405">
        <property type="term" value="F:CoA-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.300.30:FF:000007">
        <property type="entry name" value="4-coumarate--CoA ligase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24096:SF149">
        <property type="entry name" value="AMP-BINDING DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24096">
        <property type="entry name" value="LONG-CHAIN-FATTY-ACID--COA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12035" checksum="CF6958BA3A862EB8" modified="2020-12-02" version="1" fragment="single">GKFATSTFHEELDNVKKVAPGELEAILIAHPKIQDAAVIGIPDEECGELPKGFIVAKDMSDEEVHSYLEKNVAHYKKLRGGVERVDEIPKSISGKILRRVLREQELSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J502</accession>
    <name>A0A6S7J502_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024803</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013363">
        <property type="protein sequence ID" value="CAB4025021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J502"/>
    <dbReference type="OrthoDB" id="3261222at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="29861" checksum="748178DFFDFFC711" modified="2020-12-02" version="1" fragment="single">MDNGEITGLISIDIRKAFDSIDHKILLRKMQDQFGVQDFELKWFQSYLTKRSQVCVVGGHTSLAKEIVCGVPQGSILEPLMFLLYINDLPECLKNTTPGMYVDDTQIYASSASFSELVTKLNQDLENIMQNKLQLHTKKTKAMFIGSPYNLKNKVEMSDNWFENMDNGEITGLISVDIRKAFDSIDHKILLRKMQDQFGVQDFELKWFQSYLTKRSQVCVVDGHTSLAKEIVCGVPQGSILGLLMFLLYINDLPECLKNTTPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHX5</accession>
    <name>A0A6S7JHX5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">YqaJ viral recombinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005307</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016747">
        <property type="protein sequence ID" value="CAB4030271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHX5"/>
    <dbReference type="OrthoDB" id="5979335at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051703">
        <property type="entry name" value="NF-kappa-B_Signaling_Reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019080">
        <property type="entry name" value="YqaJ_viral_recombinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46609">
        <property type="entry name" value="EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46609:SF8">
        <property type="entry name" value="YQAJ VIRAL RECOMBINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09588">
        <property type="entry name" value="YqaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YqaJ viral recombinase" evidence="1">
        <location>
            <begin position="170"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="280" mass="31904" checksum="4DD64766D18CE74E" modified="2020-12-02" version="1" fragment="single">NESGCLLLDDIPGSNLDLSRLTSYRVDQLKFWLSCRGDSLKNLHTKAACVQRINNYVRNGQQDNLVDPTANQIYVQGKELQQEKAQNTNTVTNSNLCLKGNYWKSTNLEWSKPLLDLPTLTIKEIEQFFEESGKTGKPQKRADNLLYENFLDSRGMDKHAEKFVNSDVLKVPEILQKKFDHGKIYEPVALEKYRVCMREEMDPSTEVYPCGLVLNRNNCWLGSSPDGKVVSGDMFGIAECKCPEQYKHSDVFDVACSNESSNFTLHVENSKLQLRKTHPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQP1</accession>
    <name>A0A6S7JQP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087879</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017661">
        <property type="protein sequence ID" value="CAB4031480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQP1"/>
    <dbReference type="OrthoDB" id="5976409at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="362" mass="40738" checksum="1478ECDC0623E668" modified="2020-12-02" version="1">MDVTSYVHKLLAKEVLRDKLIQHFQAVDRLLSHPACAIIQQIKFDVVHIEVSNGYCFSIKAQNFIVCPIPESMRGKLSPRSFVPYDSSKPPKPGYFREGIVNSFPDDDVRVRFLSKLYQCLLAFSMPHKVRKLVVVGLKDSGKTSWSNIFHCVIPASYIASLTNERQFSAAMINNKTQLVLVDEWSPSTMQSDLAKCILQGGCMVSAVKHGLPKTVLNNSPFYITTNNLPNFGKEEDDNVKRRIEIFTTMSLPQTLPGIDKWIYDHAMDCIACIAEEINANREHIDGHELWDEPNHSRPLTIAANEGESLLSDEHVRRISNADLREEDAPIVEELSQTIHDGFGLSYVRDVSRGREGPLVGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JX23</accession>
    <name>A0A6S7JX23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028959</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011033">
        <property type="protein sequence ID" value="CAB4020581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JX23"/>
    <dbReference type="OrthoDB" id="10247773at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="62"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="91"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13160" checksum="5DCF959A0CEC1003" modified="2020-12-02" version="1">MDFLRWLVTSKRKTGGVNYSEAISFGMPKGRGRKGEAAPRKRNNRKVTKQSVTLQRVPTENTQQVQPTSPTSPSTQVPPPNAPHIEPRQPQPRTFPTQPLPQQIANSQEMTNFVQNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JY43</accession>
    <name>A0A6S7JY43_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037813</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022361">
        <property type="protein sequence ID" value="CAB4036747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JY43"/>
    <dbReference type="OrthoDB" id="5976291at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="36599" checksum="CA45204477345A34" modified="2020-12-02" version="1" fragment="single">MDSGSEEESVLDVGEEQLFEEDLEVDEFAETLKLIESNAEEIDQQLLDAISEVEGAKHFQCPDCPKVCKSKGGLTRHRRSKHPDKEELTVATINIPPINMEIIAKIIAETVEKLREENIYPKEILDIISKLKPSESFLKFITKVFRLFCRKLNQDRMLALFYGEIIKDWRVYFPPCDNQKAINILLIHLPQKLVVYHKQLASNKQRDDQGEDEIGLKPEEIGPLSYVTGYVLQSLYRKSKNSKHWNSPRSQELQFLLQSLKLEETKEDQYIQSLSRGGLWTPNETIKNIAKTTELMFRQHLKLNKSASVPTDKVVDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K224</accession>
    <name>A0A6S7K224_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Methionine synthase reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A066734</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023141">
        <property type="protein sequence ID" value="CAB4037478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K224"/>
    <dbReference type="OrthoDB" id="1856718at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030586">
        <property type="term" value="F:[methionine synthase] reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050667">
        <property type="term" value="P:homocysteine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.990.10">
        <property type="entry name" value="NADPH-cytochrome p450 Reductase, Chain A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003097">
        <property type="entry name" value="CysJ-like_FAD-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023173">
        <property type="entry name" value="NADPH_Cyt_P450_Rdtase_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19384:SF84">
        <property type="entry name" value="METHIONINE SYNTHASE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19384">
        <property type="entry name" value="NITRIC OXIDE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00667">
        <property type="entry name" value="FAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="Riboflavin synthase domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4037478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="65" mass="7408" checksum="3FE6EBF583FC0819" modified="2020-12-02" version="1" fragment="single">AFLRVLCEYTSDAVEKRRLQELCSKEGAANYSTFIREPHVSFIDILKAFPSCKPPFERLLGKSSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4H7</accession>
    <name>A0A6S7K4H7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047922</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023196">
        <property type="protein sequence ID" value="CAB4037534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4H7"/>
    <dbReference type="OrthoDB" id="6151153at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17529" checksum="23B905888F6D6E39" modified="2020-12-02" version="1" fragment="single">YLNYYIGDEDVLKIDLEQEIMSHDKEKKGSSSETNASVNNISVTNRQLNVRPFQINENRTETASGWEKWLRNIERQFRYFGITDPEMKKDGLIIYGGQIIAALEDTLLDATGDEAGEDAYVQLIIKLNKHFLPKKNKDFARFQFGNLKQNHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K5E2</accession>
    <name>A0A6S7K5E2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A089576</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020027144">
        <property type="protein sequence ID" value="CAB4040705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K5E2"/>
    <dbReference type="OrthoDB" id="162894at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000961">
        <property type="entry name" value="AGC-kinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050236">
        <property type="entry name" value="Ser_Thr_kinase_AGC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24356:SF414">
        <property type="entry name" value="NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24356">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51285">
        <property type="entry name" value="AGC_KINASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AGC-kinase C-terminal" evidence="9">
        <location>
            <begin position="54"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="119"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="121"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="137"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="167"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4040705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20324" checksum="A2580B06D3AD76DB" modified="2020-12-02" version="1" fragment="single">NFSQEPVPPILGDIEWPSDEEVAEDAKQLILRLLDEEPGRRLGDHEIKIHVYFVELDWDALLRQKAEFIPQLDDEEDTSYFDTRTDRYNHSLESDDDEDQAALDFSSFSTCSPRYSRICNSPSPLASSPVSPVGQEMFHDLKSSEKTIRRTYSEGSNSPPTVRRRSKTESHNSGFRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6W0</accession>
    <name>A0A6S7K6W0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028138">
        <property type="protein sequence ID" value="CAB4041326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6W0"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="377" mass="42811" checksum="CADBC65059989ACE" modified="2020-12-02" version="1">MDKKKLSALVLLDLSKAFDSINHQRLLHKLSNVGASKSTVNWFRSYLTDRFQSTRINSTLSDPLPITYGVPQGAILSPLLFCIYLNDLPCASYNGDLESYVDDTKTLLSFPLTEADTGIKNLEEDLHKIASWCCENNLLVNPDKTKFMIIGTRQLMNELDVNISISFMGKILEPVDFAKDLGLLMDSHLSYDKHISNLVSSFLYKLCQINRVKNNFDKGTLTMIITSLVISKLLSCSTVWSNTTCTNIKKLQSIQNFACKIITGSKKYDHVSPLLQNLEWLTVDKLLYFRDAVMTFKCMNNLAPKYLCDMFEKRSCIHNRSTRNCNSIQIPLFKTASGQRSFAFRGASIWNNLDTELKKCTSLKTFKSQLKEHLLST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7E2</accession>
    <name>A0A6S7K7E2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051301</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012629">
        <property type="protein sequence ID" value="CAB4023692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7E2"/>
    <dbReference type="OrthoDB" id="4369127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="177"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="22716" checksum="726F5C7C21609A82" modified="2020-12-02" version="1">MVPFLVTNDSLEYPILGYNVIEELIKPMNTSDIQSAHIATVQASFQGFDEKALLELVRLIQSARANELCTIKSPKNDFVIPAKKTFKVNCRANTGPVEETTLVLFEPDELTTWPNGLSVHQTVTTVKQGSTSQVKIDVTNTTNHDIVVRKYTVLGSLQLIKSIIPVRSEVGRKVTQRKTTNSNSHTIPSEFNGERNSRTRQYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K819</accession>
    <name>A0A6S7K819_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028570">
        <property type="protein sequence ID" value="CAB4041595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K819"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16033" checksum="C996901E23B0C957" modified="2020-12-02" version="1" fragment="single">MVRVAYNGNLSQESYSFIGVPQASILGPLLFVIAFNDIDDVIKESSIIMYTDDVVLYVAADDIKAISWKLSNDMRNDMESIADWMDENEFIINLKEVFLSDPNFPSAVELKKKRACVLVRKIMGGDICDPLSGHFIRNEHGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8D7</accession>
    <name>A0A6S7K8D7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071699</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013000">
        <property type="protein sequence ID" value="CAB4024383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8D7"/>
    <dbReference type="OrthoDB" id="5984363at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06071">
        <property type="entry name" value="Beach"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1540.10">
        <property type="entry name" value="BEACH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000409">
        <property type="entry name" value="BEACH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036372">
        <property type="entry name" value="BEACH_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46866">
        <property type="entry name" value="GH12955P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46866:SF1">
        <property type="entry name" value="GH12955P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02138">
        <property type="entry name" value="Beach"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01026">
        <property type="entry name" value="Beach"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81837">
        <property type="entry name" value="BEACH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50197">
        <property type="entry name" value="BEACH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="660"/>
            <end position="758"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1155"/>
            <end position="1192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="660"/>
            <end position="672"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="679"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="694"/>
            <end position="704"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="707"/>
            <end position="740"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="741"/>
            <end position="758"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1227" mass="138529" checksum="09B6C9E58AFF6109" modified="2020-12-02" version="1" fragment="single">MALNMIAGRRLGEPNYHPVLPWVTDFTSPNGKHRDLTKSKFRINKGDFQLDITFKNVSDSDDDLTENPPHHVSGVLSEITYHVYLARCTPKSVLQKHVRAKWEPNEYPSNMQRLQEWTPDECIPEFYTDPTIFKSIHADLPDLGIPSWAESSEEFIRLHRKALESDYVCDHLHDWIDLTFGYKLVGVAAEKAKNVYLHLVDQHQTISSHGVVQLFEQPHPRQHRHHDMVLYPSMVNLEDGLEHEMRDVSNEGQIGYVEEGRAEYASDEVLPSSWDEVDLDTKVETGEDELGASLNFKKLKQWPRPYIPAFLRLKDSVETTTDILPAIDSLPISLPIGYGPLEEFDQVELLTKFKLQTKQNDLSVAKDSFGEVVVVPRSEIPETARHKEIQNICTMVMEMFLPAKMRLLSSDMSQKERFITAKRVYSAGKFAVPGILRDGLKTLFDEGCGFHKRQGFPPLTPELLLQQHVNIVPFPSYFKHLYEFLVEFHLGNPITSTLAIAEKNNRKFAITNTLNDVSYTLRQVEIAVKHLPDLLADLNGEGLDLLISYLSPLFSDEKTQLQAFLHLFDPLAASLGPKRTKKTFLKQLLKHYDVRMGNASVLLFHQSFLSKLIMRFGMDQFLDHFLSFIVDALNLSSKDAQVNVDTYSQDEVQGVVLEDDKGLAQNDKREPQDECNVEDAERQLSRPEKEPESESQTYSESNGSVDKVFEMSQEIRKDYSEEQKENTDSERVFGEGKSDLVETSSDESTNGARSTSVYATTESAQEGFMNDEYRGLYKIDEFSCGEVYNDDGGTGRLGDEDDDEVETIERNDAIFHKSFPTIARRDSDDDWERVTESDFSFERSVSFHSEHLDDGKEDTNIGDEDTSDREIPEAAAESICWLSPRLGPLLASNHIIKPLLGMLVKCYVGVVAMGDKGMSIGDTNAKWILHCLACCTEIYGEAVIVHQYMPFVMSKINISSEHVSVKGEANLAGALVLVRQYICSISKDSLMQQFEMLCYQAVDQVLCLISSATITLASEAPARTFLALLVLDILQVVCDIFERGSAQDLLAPLIATFFSCFESCNSPTETGKDVSRKQPCANEIRETFTASLAYNAYILLCKSLGDTYMSATLDKNYDMIWQLCCSVDEALSNHTTSPTSQPVFVLSDEETETVHATSKVKPAPNATEKKAFDSESFSPDMESRKDVKSTSLERAVPAQLETRTKGTFVSSRQHLAGNWLKYWKNHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8R4</accession>
    <name>A0A6S7K8R4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025117">
        <property type="protein sequence ID" value="CAB4039244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8R4"/>
    <dbReference type="OrthoDB" id="6597828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF5">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24695" checksum="19D3419B8CACACF3" modified="2020-12-02" version="1">MQNLKIMNDIPVPGGKEEQNLELHDNEQGRPVRRTSTAHQFVTSQNRNSNAIRNEIVQSAINFLGQRMNTENDGTVESLMSILEASSSKDLILASRNLVSSILGPSCLSDFVSDVCKSWNNLAKIEHVEVEDTGTIMATERVVSHYNNVKTSGRSSLNPETINGILHISLNGKGASFFDPRPVVSEFLTSKERRNREPCEELYKQREFVKHFFKQESGCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K923</accession>
    <name>A0A6S7K923_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A018209</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026046">
        <property type="protein sequence ID" value="CAB4039911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K923"/>
    <dbReference type="OrthoDB" id="441971at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="12"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23237" checksum="264C7C91FE88AA33" modified="2020-12-02" version="1">MDSRVRNVQQTKNTRPISKGTHAEHRSWTTDGTVGYGRIRSTSYDCTGELVHLCYVRSLHQVGRGGANSQSTCRDGIAKAFVNEVVTRHGVPSKLLTDQGWNFEADLMKQVFSLLGVQKLRTSPYHPQTDGQVERMNRTLKGILTAYVNKNHNDWDDHLPLALFAYRNSVHSSSGVSPFKAIYGREATTPLVLMNTETEVKEQFISN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAD0</accession>
    <name>A0A6S7KAD0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070006</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013425">
        <property type="protein sequence ID" value="CAB4025123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAD0"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="46"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="53050" checksum="9CEE7FB182D2C9FC" modified="2020-12-02" version="1">MFCNKQHNAENCIVIKNYKKTIDCPSLTKNANNHNHSNSKPKLAHLNVRSLKNRDNLVQLRELNGEHQYDILTISESWLNSTVKNSEVEIEGYRLLRLDRLGKRGGGVCVFTRNSLKTKIIKDISVISSTGFHQLWILIQHKKMKSIVLCVAYRPPDCPVSCFVDDFMDNYSYALILKKDIFVVGDLNCNLLKSGPESDALNELCSSLNLFQLIKEPTRVTLQSSSLIDVILTSNTSLVVESGVEKTHISDHFLVYSILKLKLPKKLPDYMVIRSFKNYSSEAFKNDLEQLIWQENPIDQGVDQRLDNFNQKFLRVLDMHVPIKTVKIKRRLCPFVDQEIVQLMKKRNALHKLARQTLQALDWDRYRSCRNQIKRKWRESERKFVYKRINDKNSNNNSLWKTSPGPDKVSVKVIKDALPYILQPLTDIVNCSLRESLFPSAWKLSEVIPLLKEGDHEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC67</accession>
    <name>A0A6S7KC67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032123">
        <property type="protein sequence ID" value="CAB4043336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC67"/>
    <dbReference type="OrthoDB" id="10488567at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12753" checksum="9A76125B57D4FA7C" modified="2020-12-02" version="1">MSLIIDKNCGGTEWYIVVVSIVSGIIIGILLSYIVSCSCRKFRSREPQSNPKAQTTEVDTTYQELDLSKMNTEDNYQSLRVNPASNDAAANDDDSTYMQLSKARDVEDNYQSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJ93</accession>
    <name>A0A6S7KJ93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Leucine--tRNA ligase, cytoplasmic isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044554</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011030">
        <property type="protein sequence ID" value="CAB4020578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJ93"/>
    <dbReference type="OrthoDB" id="5834076at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004823">
        <property type="term" value="F:leucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006429">
        <property type="term" value="P:leucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004493">
        <property type="entry name" value="Leu-tRNA-synth_Ia_arc/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45794:SF1">
        <property type="entry name" value="LEUCINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45794">
        <property type="entry name" value="LEUCYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="27548" checksum="A9F7A69CF2765DDB" modified="2020-12-02" version="1" fragment="single">DALSITCQDFKKGREQCSFFLPIIAGKLLIEYCYPLLWALRDSRYAGQECLSHSPRSPLNSVANAVCCSTRNLKLKVYHDGFKPSISMFDTFLFSQFPDVVDHNYKLPRSKMIQALDVLCGNCTFRALILTFILLINQQLKQFILSNIWLYEIRACLRTGFNFFIKVDWRRSFITTDVNPYYDSFVRWQFLTLKDRGKIKFGKRYTIFSPKDNQPCMDHDRLSGEVGIYCTGLYKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJY7</accession>
    <name>A0A6S7KJY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037833</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014903">
        <property type="protein sequence ID" value="CAB4027612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJY7"/>
    <dbReference type="OrthoDB" id="5976191at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14833" checksum="C06C0627EE9FE211" modified="2020-12-02" version="1" fragment="single">NDAFIGRTYLAAIDHNAHMFRKAAVTKSGQPKYNKVYSKRSKNWRVDEVKEPKSYDFWPTLATRILQKKIKDQISILRAVPVPEDHPKNIAPSIALKPIPKTSDLVQRAQSRFVTEQTNKDAIMGEGPSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KU22</accession>
    <name>A0A6S7KU22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003959</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040687">
        <property type="protein sequence ID" value="CAB4045620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KU22"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="13876" checksum="A66E071708AA7093" modified="2020-12-02" version="1" fragment="single">MKNPRFSHIEAKQERPSKQRCRRKLSSFEESPDDEISDTEAADSAETSSEREGDTPNGQMISESDDNLLSEIAQEFDGGDDTGPNISEKLTLSTSVGLKSWMIQNLNPNWKNTIDQQTALASLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L7E1</accession>
    <name>A0A6S7L7E1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058693</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015451">
        <property type="protein sequence ID" value="CAB4028389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L7E1"/>
    <dbReference type="OrthoDB" id="5956786at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF1">
        <property type="entry name" value="TELOMERE LENGTH REGULATION PROTEIN TEL2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="30313" checksum="0E4D8155E2D4CFB4" modified="2020-12-02" version="1" fragment="single">MSAVKASIKRNDQVRSLDHLHPAIKVDKKKINIHPNHLFYRLIAIAQRDENMTPCFDYELTAMPTSLFKDNFMRKSVKPQLARALEKSVQSSGENPQAMHVLDGGALIHQVKWQKKVTYKDIAVPYVNYVRTGYRDCCIVFDGYGQAPTIKDHEHQRRIAELLSENIKAHSDQQTFLSNEKNKSQFIALLNRCLEADDQILHNSTGDADTLIVETALLFARQEREVKVVADDTDVLILLMYHCNANMADIYFHSEVKRSKKFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LMB6</accession>
    <name>A0A6S7LMB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071667</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024783">
        <property type="protein sequence ID" value="CAB4038953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LMB6"/>
    <dbReference type="OrthoDB" id="427924at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="6532" checksum="25C7A0696E72D596" modified="2020-12-02" version="1" fragment="single">MQHAGEPFRAPVNSTQISALSWTELEETQHLDDHILLVKRWVLNGLRPDAKPKAASPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LNI8</accession>
    <name>A0A6S7LNI8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="5">5.6.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A002573</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020021228">
        <property type="protein sequence ID" value="CAB4035629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LNI8"/>
    <dbReference type="OrthoDB" id="6149666at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF105">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE Q1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0347">Helicase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="6">
        <location>
            <begin position="64"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4035629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="28194" checksum="A802DEB5EE184A0D" modified="2020-12-02" version="1" fragment="single">MDKGEGLSVDDLIDLEKIILDNNYFEFGEKVYKQKLGTAIGTKFAPAFANNVMAELENKMLAGYHLSPSGHDVIAVLPTGFGKSVLFQLLPDILPTKTTINIVIVLCPLSSIIEDQLHSLKIMSINAGVLPSRYENENCETLFNNEDMGMAADIHLPDDFLNGLTSIVFAHPEDLLSDVGRKLMKSDVYQKNVVACVIDEGHCVEMWGNDFRKDFKGLSCLKAMFPSVPTLLLTATAPPQLILDLKKSLCLSDNCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LNX9</accession>
    <name>A0A6S7LNX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">cGMP-specific 3,5 -cyclic phosphodiesterase-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081044</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025505">
        <property type="protein sequence ID" value="CAB4039522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LNX9"/>
    <dbReference type="OrthoDB" id="6017640at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004114">
        <property type="term" value="F:3',5'-cyclic-nucleotide phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1300.10">
        <property type="entry name" value="3'5'-cyclic nucleotide phosphodiesterase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023088">
        <property type="entry name" value="PDEase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002073">
        <property type="entry name" value="PDEase_catalytic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036971">
        <property type="entry name" value="PDEase_catalytic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11347">
        <property type="entry name" value="CYCLIC NUCLEOTIDE PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00233">
        <property type="entry name" value="PDEase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00387">
        <property type="entry name" value="PDIESTERASE1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51845">
        <property type="entry name" value="PDEASE_I_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="10324" checksum="3858EED8AF81E48D" modified="2020-12-02" version="1" fragment="single">MMMTACDVSAITKPWPIQQTVAKLVASEFFEQGDIERDELKSEPMEFTVLNNSLCLSFSIFKPMMDRKKKDDLPKMQVGFIDAICLPIYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAG4</accession>
    <name>A0A7D9DAG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000251">
        <property type="protein sequence ID" value="CAB3980039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAG4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="10662" checksum="A324B008C413104F" modified="2020-12-02" version="1" fragment="single">EGNVDHPSAAIVTTSSTPTTGASLSEATIQQIVSAVSQAVLASLNATGATSQSTSASETQELPVVASGIVSPSADATTQGHVASALQHVSSENFIHVSQPTSSHMFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DB71</accession>
    <name>A0A7D9DB71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018627</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000384">
        <property type="protein sequence ID" value="CAB3981392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DB71"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="18072" checksum="E9262C9A32BB43C2" modified="2020-12-02" version="1">MCENFKKIDAQITETGYDYLDNWADVCYNVTIQEELSNFMLMYIVQKKIQKKTEFSPYLAQDEWVEKSKSVIDEYAYFYTFDMLDDLSILYRFENLLDDVYGKRKCEYLQPEKLKMLYELYVDYIRNGAKANERIYKFVDEMLEDAEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DDF0</accession>
    <name>A0A7D9DDF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000461">
        <property type="protein sequence ID" value="CAB3982074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DDF0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="153"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="23560" checksum="BC96EE88A4F339B7" modified="2020-12-02" version="1" fragment="single">MKSNKNQLTLQVVGYRSQLHDRGKVKTKSDSVDNDSVGKRKPRAKQQETQLKLKHNKERSNYVKGAKLSRVAAKFNGKLPDNKPKSTVQKSGNSGSTPVNETTAFVTKNDLAKLLETLNENNVDNVPAIQNDAQLDLQGPSNKTTQLTQMNTKQDEKTKEMNTNEKFQVSEKVYNELENFAPVVKENNPGETVAITKETIKPAAMRSSFAIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEQ3</accession>
    <name>A0A7D9DEQ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003578</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000568">
        <property type="protein sequence ID" value="CAB3983042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DEQ3"/>
    <dbReference type="OrthoDB" id="6425564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="31713" checksum="EA8DD2CE0003E583" modified="2020-12-02" version="1" fragment="single">RNVLVRICWTVIMKKPARPLKSMDVSGMDDEPTRRDFTMNVIASTSRTCKFAQRPNMVKTEQIKDPQVFYDYLTSDEINVLDADLVSDDIIEIRYEYTDNFIKPDAKTNVVIAAFTTAYARLKLYGVLDMLQERVMYYDTDSVILISKLNEPEPPLGNHLGELTDELGGEYITVFASGGPNNYCYRTNSGKVETKVRGITLDCTARQKVNFEVIRGLVYLHAQCQVTGQVSVDIPFRITRNTRTKEIETKGMKKDYRIVYNKRVIMDDYKTLPYGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DI12</accession>
    <name>A0A7D9DI12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">F-box only 11-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A005542</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000989">
        <property type="protein sequence ID" value="CAB3986256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DI12"/>
    <dbReference type="OrthoDB" id="427974at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd19676">
        <property type="entry name" value="UBR-box_UBR6_FBXO11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.160.20.10:FF:000035">
        <property type="entry name" value="F-box only protein 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.160.20.10:FF:000175">
        <property type="entry name" value="Zinc finger protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006633">
        <property type="entry name" value="Carb-bd_sugar_hydrolysis-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047504">
        <property type="entry name" value="FBXO11_UBR-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022441">
        <property type="entry name" value="Para_beta_helix_rpt-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051550">
        <property type="entry name" value="SCF-Subunits/Alg-Epimerases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003126">
        <property type="entry name" value="Znf_UBR"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03804">
        <property type="entry name" value="para_beta_helix"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22990">
        <property type="entry name" value="F-BOX ONLY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22990:SF20">
        <property type="entry name" value="F-BOX ONLY PROTEIN 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02207">
        <property type="entry name" value="zf-UBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00722">
        <property type="entry name" value="CASH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="19"/>
    </dbReference>
    <dbReference type="SMART" id="SM00396">
        <property type="entry name" value="ZnF_UBR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51157">
        <property type="entry name" value="ZF_UBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3986256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="878" mass="96913" checksum="FFC1919D8C8D37B2" modified="2020-12-02" version="1">MPSNEMSFKRMATRSSPRRCVLERTAVSRKGSISLVKTARSCKDNQLDRSEIIKTSVRHANCVSSRAKRSCTLGRSRISEQSRKGHTSTPYFQCQLPDEVLLNLFSFLPAKDICTLACVCQRFVKICKDSTLWEQLYKSTFGLDYLLKRNNRGLYERIPHGALTKDSWHEAFISFYHSHHVVCKESQKKCEHVQYHSSLEEAIKCVPENGIIIVHPGIYREELVIKKTVTIIGAGSEDKPEVTIEGSNATVVKFVSGSSTSYIRNISIKYVGGDGASSRPSCLDIGSDCSATIHRCNVASKANAGSTVYVHGKNARPRVINCSITDSENVGIFISNNAQGIYENNEISNNKLAGVWVKNGGNPIMRNNKVHHGRDVGFFIFDNGQGYYDGNDVFSNRIAGFEIRTGGNPTVVRCKIHHGLTGGIYVHDEGRGQFLENKIYANTFAGVWVTSRSNPTIRENEIFSGQQGGVYVFGDGRGVIENNNIHSNALAGIQIRSQSNPVVRHNKIHHGLHGGIYVHEGGLGLIENNEIYSNTLAGIWVTTGSSPVMRNNRIHSGKQVGVYFYDNGAGVLEDNEIFNHKYSGIQIRTSSNPVVRRNKIWGGQNGGVLVYNQGRGLLEENEIFDNAMAGVWIKTESDPILRRNKIHDGQEGGICIFNGGKGFLENNDIFRNALTGVLISSSSFPVLRGNRIFEGGTTGIEITNGAGGVLESNEIFNNKFSGICLATGVKPQLSNNITYDNKEVIKSTIESGCCLYTVSGNTCYPMHDFYRCNTCGRLENFAICVNCVKQCHQGHNVEFVRRDRFFCDCGAGSTGTPCQLLNKDSSLAQKSSTEHQSMRTMITRSKSRVNSRCGCDVTSGVWHNFENTQKVNTATESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXK1</accession>
    <name>A0A7D9DXK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074453</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002335">
        <property type="protein sequence ID" value="CAB3993832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXK1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11970" checksum="B001FCC93CE86FE0" modified="2020-12-02" version="1">MEDKPEQIQVPVTSEKKKDPRRVAAGKRLAAISKIAKERKKKLAEPRESPSNNSMITYIGVAIALISLVLAYKSHQRETKEPEPKYIPKTVDVTRKADESRLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DYY7</accession>
    <name>A0A7D9DYY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002790">
        <property type="protein sequence ID" value="CAB3996066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DYY7"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="571" mass="65827" checksum="FA38F205E58C2100" modified="2020-12-02" version="1">MEEHQEEYDDWRMEELREKYPNYEEMDTETLDNELPYLDKDLRESETTEETQDINEEINYILELRRRREVPSEDPSREQLDEKFPDLSNLSYDDLMDRGDRLLNELILSDLDENSFKEKSEELRYVRMLSNDYQRESNLNKLLNLRDKVKKRDLIKRDDRRRLQRLRLWARENAGILSSVLISSSAIIIGLVASTRNILWKVGDTTGKLDKRISELVNNQIELPPVFQKIADGVELAADNIWIIIIKVAGETAYDCSGESSYEIYKDLWLTLGNRNKMTEQCLASENLRKLISGDDSGTKVGDANKVADGLIHSVYGSKLRKPIDKIIADHGLYTPFYMNNNPMYILTLPQSDEIMTAQGGEAKGNYKLDNLELEYETIENDTLASEVSRMYSTGRSLSYKHVTLMRTSNWDKDLTIVNENINIPRKSMSAIVLLFTNRVRTDSEEYIYPNIDKVNLTIEGVPNAVFSQGLPKNRFFEEAKRFFCPMCEKSMADEFMSISKFFSNGFALVIDLRSTQDDTTGGGRRIVNTQSGVLMEIKKRATTADVQCNIFIVSDALLNFANRDLSSIQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DZP5</accession>
    <name>A0A7D9DZP5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="5">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">DNA 3'-5' helicase Q1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A013281</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020002908">
        <property type="protein sequence ID" value="CAB3996614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DZP5"/>
    <dbReference type="OrthoDB" id="5988705at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF105">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE Q1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="7">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00044566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3996614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15869" checksum="EEBD260ACA4BF99E" modified="2020-12-02" version="1">MYVDDSMNPKKRTVEMFHSRIDELNRDHILEESMGKPDGSVLIATIAYGMGIDCKNVTTVIHYGPSYNLKTYMQESGRTNMQMCKSVILYSSLMMMHCSDEIKSSVRESSKCRRKMLLESFDDDLNNLPVTQYPQPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E048</accession>
    <name>A0A7D9E048_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036560</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003361">
        <property type="protein sequence ID" value="CAB3998458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E048"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="126"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16170" checksum="A070513AD6F37023" modified="2020-12-02" version="1">MCDSVRIRCFGKCTNVRLLFAPPSRRSAPSKRKKEISRSDMKLCILCDFASTSKSRRKVRKKCKEFWGKLRKFSAGDKEFRHVPFVLCHISELVPNKQSPCAVNFPAGGITFKSQEDTETSSRGLSVEDERKQNAIKDHGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBZ4</accession>
    <name>A0A7D9EBZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A025021</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005394">
        <property type="protein sequence ID" value="CAB4006040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBZ4"/>
    <dbReference type="OrthoDB" id="10068888at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="3">
        <location>
            <begin position="498"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="domain" description="DDE Tnp4" evidence="4">
        <location>
            <begin position="754"/>
            <end position="827"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4006040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="910" mass="103380" checksum="E256B86382690B23" modified="2020-12-02" version="1">MVAQHHHHAKASVGNETTVIQARKRAQLLIVRNLQIEAFEEEFDSFEKKKGLSKTSPLLKLNPIIDSDGLLRIDGRLKQADLPYEERHPLILPGKHHVTSLIVNNCHEEAKHQGRHFTHGMVRSKGFWIVGGKRLVNRVIHQCLKCKKLRGKLHQQKMADLPSERITPSAPFTFVGLDVFGPWEVTARRTRGGHAYNNKEQSLAEKFKTLATLIEGEFKGHSDEQHAEAEDTLGMDKTVENVSTKKTSIPTHATEYREDVDNSEIEMKSTKYGCDSGKIINSQCHCSELAVQFKRIEGHLKLLKNRIEVREADEIALICRTATCRSEKSYLKSELEVANSKIIDLQAKIKHLENEKSSLTTAIRIIQEDTDTEDDQGGNQWVEPNKKKKKRKRDQTQKLQEMPTIATHENCPLETTCADESNATVKKNVIISSRQGRKDGYPNTRGNHQNPVKVIIAGDSMIKHINGYKMSKSNTRVQVSSTFPGCTTLDLDDYVKPKAFDTIDHDIMLLKLENYGVERNSLTWFKSYLTDRNKKCLVNVQLSNSVPITCGVPQGSNLGPLLFLVYINDLPNCLNHTTPRMFADDTSVSYASNSVEELENIINSDLKNLNKDTAGFSEFMRMPYSKFTELVELISPIIARCDTIMREAISPGERLAICIRYLATGETFRSLSFQFRIGRTTISEIVLDVCTAIFNELGKSHLQTPNSTEKWKEIAGLFLSRWNLPNNIGAIDGKRILIQKPAHSGSHFHDYKRDEAFPLTTYLLKPYPNKNLTVEQRITNYRISRGRRISENILGILGNRWRCFRVPFLLEPEKVKKITLAILVLHNWLRADAGSRAVYCPSTLIDNENCDTGEIIKGTWRADTTSESFLDLQPTISRNSTSKAKQMREEFNVWFNNKGDLPWQRQNCGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EN39</accession>
    <name>A0A7D9EN39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071771</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007848">
        <property type="protein sequence ID" value="CAB4013339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EN39"/>
    <dbReference type="OrthoDB" id="5986816at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="15747" checksum="B059F80467930B3F" modified="2020-12-02" version="1">MLRDSETSESVAPSIQDSSSDNDENYEVFSSQIYAPYEDEPLADEREDSNEENESDLADEHADIDGLTPSVLEARYENTVSVESWCKCQQCHAETLVGALEFHCCREVVDVPGNMAFDGSIEKINCITEHDDYGAMIIIVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPA2</accession>
    <name>A0A7D9EPA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SURP and G-patch domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079924</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007924">
        <property type="protein sequence ID" value="CAB4013558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPA2"/>
    <dbReference type="OrthoDB" id="5988132at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="812"/>
            <end position="839"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="814"/>
            <end position="839"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="918" mass="103031" checksum="4D1BFD87D1A8E9A3" modified="2020-12-02" version="1">MTTIGKIDVFDETQESWETYVERDLLLPEKPADKNFDEIKLPNDCDVPGSASLSLSRYFKRTLSVCPNCRKKLHSMKADRESSMGQHDSAEDSKMIFSMESMTLCFGQEKFGGNSNPKNRTLALLFSALIENETCDSPCHSMFDNMLQSTPAAFHGTADSTFKTPGEKDEVKPLEKLNEFLQSRDISPEVAPDQHHHLWKAIVSKPLDPQYPIKEQEGIDSVFMEALCEVVEKLGDLKGMTWAKDQTELLKSAKRYLKSDYKVHVSKESSVPDHCRSYALSDPSDPDFQATCTHKHTDYCDRCNQVEEVFGNIDEALALVSEDNKDFKEQLIFKVAQAKRNINAWKAHLLRNINQDEARIITSDSLDETSVLLVQDWAMKFLPRKYRESQTDWFGKRGLSWHITVAMYKSDNGEIHSMTFVHVFQSCKQDNCTTLSIMKDVVHKLKEELPKLEIVYYRQDNAGCYHCCSTIVGASMIGKDVGVSVRRMDFSDPQGGKGSCDRKAATVKSHMKIFLNTGNNIETGEEMVAAMQSSGGIPGVKVILASTAIAAKPLNVKMDGVSTFSNIEYGEGYLKVWKAYGIGPGKKLPLSKLGELDQGSTIVDLSTACLKKDAAVQSDAHFIPLNKSVRSCKQSAPKKTTQEEEIEESHNLFSCPEEGCIKTYQRYSALQHHLDCGKHERKLEHETLCDRAAHGYANRLQGLTSGVPEMSSAVEKALEGSTTQSLPMGWALRSNQGRKKKRFSEKQKSFLTDRFLIGEATGRKEDAMSVAKAMMTAKDVDGHCLFNSTEFLTSKQIAGFFSRLAAKRQLLREDDSDDDETDDDETDDDIDPAENEESLSELKNRVLEDVSLTHPICFDRYNLCDLTKKSKLSNLSIPVLQDICKEFDIPASDITKKRKAPYIERIFGFIDENCTCIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EY19</accession>
    <name>A0A7D9EY19_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031248</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010926">
        <property type="protein sequence ID" value="CAB4020380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EY19"/>
    <dbReference type="OrthoDB" id="5987336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="29703" checksum="40AF6B40AF9627BD" modified="2020-12-02" version="1" fragment="single">PKKTTKKLVNPITMEKEYCMPEDFTNVAIPFRLLYGDNHCAMKCLQYPFCAGYNFKKKHQKKTPNCQLTHTLDHNFHDCNADDKGWIFYHPIAPRKQQVKNRCPPEPATQQDMLLKSFNTTKVYHIHCVNFLQCECPKDTVEISAKLQFCCLCYSTLSNLLFCCTSLERHIREAVPTLSDSVILSGEPADFLTRLTSWTGKSSTNWKLCWRATLHGWAASTFHLKCDNKKPTVTIIKVGNFIFGGYATESWEGLYKNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EYB9</accession>
    <name>A0A7D9EYB9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010154</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010585">
        <property type="protein sequence ID" value="CAB4019692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EYB9"/>
    <dbReference type="OrthoDB" id="6256369at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040171">
        <property type="entry name" value="USBP1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019536">
        <property type="entry name" value="USHBP1_PDZ-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23347">
        <property type="entry name" value="COLORECTAL MUTANT CANCER PROTEIN MCC PROTEIN -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23347:SF6">
        <property type="entry name" value="FI17904P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10506">
        <property type="entry name" value="USHBP1_PDZ-bd"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="298"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="414"/>
            <end position="537"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="762"/>
            <end position="799"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="921"/>
            <end position="950"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1040"/>
            <end position="1067"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="246"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="298"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="414"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="459"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="497"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="780"/>
            <end position="794"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="929"/>
            <end position="944"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1040"/>
            <end position="1053"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1054"/>
            <end position="1067"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1067" mass="120165" checksum="A1F7E53EF25BB858" modified="2020-12-02" version="1">MQSSEQASDKKASEPNTKCQHVSTTVTSNGDSQWKQDVLNVIQNTKNTREVSLTKDEATSICRQKGMGDRKIQEVMSQLKGGRDVSLECLEDLLREFPPPNTDQSGETNSCTSTDVFIDDSATEKTNVSEASIVNSAGVTNNISRGTNFLELANTLHFAALTSLKSEINDLQKQVKKVTSERDSYRRTLKESRDEKDRLIVKYEERLHEQEQQVTELQSVIAELRRKLDQASVNCIAEEDEEEEGTPSSDGAGNSTNASQGGSDQEDTDTAEVFEPNEQRATDSDHVDEVHFNTLSKTNQKLQSLGQSVSSPVSEKPDDAKQLELSRSIFLQLQKKLTELKDQCQELEKKKHQIEKQIQQASIVEYVSRKRSSEGTELQQQVLNITKERELMKAKVSKLEQELDKSKALTKSLREDRDGWRRKHQESSKQKHSLMNGSRHEISDSSEPPSPRPNRSNSAFTPVNTSQQNSSQFSPRLGRPRGSSTPTSPVARRHSFNRSWTLGESPGSSLKSVKNSPPGSVKSAHSGWKNASSDLGSSVVSCPDAVLMSRHKKDSTKSEGENELIEGLTGDKLIKILHQLPEFDKMPESLVNTLQSCQTLRDVFHALHTHWTQQSGDQIHEYQIEVERLQTKLEHIRAQNNVIALSMEESKSNSEQLSLLIGKYESQCLALQVELDLCDRTIDGYEAFVYLLESEQEVLSINCNADGIDLFRYRSLSRVGSESRLRCPDIYEDDDDQMTSGCYERRRHAETQARALLQRYDKGSDGNVSTGANRPWEELSSVSRTSATSSTGSSAELDFSKEEEGRLRAYLSRLKEERKTVRTTLMELQSVHDVLVPVARIELDSLDAKLDLENAVLLQELMAFKEEKAELRAKVYLTEKEKKALELQLYSREAQEQAYVVHIEHLKTELKDQIRKRRKLEETARAIQGSKTSDGEASSTSATPAITLAELRTSDEDIPADLYEAARREKKLKSRIRELVDTLEKQSKSTESRHQQAGEYISDLKRANGALVAAYEKAKKKHTARVKKLESQMMAMMEKHEKQISSLRERISMQDDSGPTHPNETAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9S6</accession>
    <name>A0A7D9H9S6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000039">
        <property type="protein sequence ID" value="CAB3977262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9S6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31025:SF22">
        <property type="entry name" value="IP13529P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31025">
        <property type="entry name" value="SI:CH211-196P9.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="474" mass="54050" checksum="A644BC6F8C637271" modified="2020-12-02" version="1">MPIPFPVIGVENIEKMDEVMRLIKDLLPNLHQETFENVKEKLIDIGVSDVDDMQLVQEQDLSDVLKPIQIRKILQLRIAVKSPQTHNLPIDKDGSSRNLSNKSGSWFDSPSTSRWKSSAQKLSDTEMTSSQKPRQESSTAKPTSGSKNGVWVVNITLPLHKFPTAIRKACEREVQLKRRLEIVQKQPISDSFGCVNAQNQSDGSQKEKEEWLISEFPKKDRDMEKVSLFMKQTYASQRLLINRSKPNVPSIMEIKDQWPFLFETDMMLQHFEELMGFNLQVILQRSLEEKASVIYDFMKQEHPSKKKVRESLLEIDTAMALDESKIPQMAGVYLLVLAYFGEPEDMMIRSYDETATVEDVVSDSKIPSTPFIAVFGEVLEAKRCGLVVDEVMVNQSINGITEGMMMLFASYFVLNIMYPNEVAATLEFIQRCFVDINPNRGNKRAKTKGKQHTVNPKVLSLANCLKDHASQWVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HJH3</accession>
    <name>A0A7D9HJH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107330780</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072313</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001003">
        <property type="protein sequence ID" value="CAB3986342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HJH3"/>
    <dbReference type="OrthoDB" id="8423312at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF13">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="125"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="387" mass="45325" checksum="1017EDB4FB2916B4" modified="2020-12-02" version="1">MADEKELIEQYFHRGYENKIIVDLLRCQHGIQIRLSTLKRRLQDYGLNRRGLNIDENRLRQLIQSETSGPGQLRGYRAVWHSLRLCHNIHVPRKDVARILQELDPEGTLQRRSRRLQRRRYISFGPNFCWHADGYDKLKPYGFPIHGAIDGYRRKILWLELSRSNNKPEVPAKFFLECVREHSGCPMLLRTDCGTENGIMAAIQAYFRQHGNDEFAGSNSHKYGTSPSNQRIEAWWSYYRRGRSSWWIDFFKEMAATEVLDIASEFHLECLWFCFASLLQNDLDKVNNHWNTHRIRRSKIGTVPGVPDISFFLPQRSGAVECKVAVTNEQTAAMENHAQIQVIDDEMNIFQEYFHYVMDNEALPYSSDHVEARDLFEYLIAVGDPLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQZ0</accession>
    <name>A0A7D9HQZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049065</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001355">
        <property type="protein sequence ID" value="CAB3988624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQZ0"/>
    <dbReference type="OrthoDB" id="8961048at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="328" mass="38688" checksum="7E85A3E3007287CA" modified="2020-12-02" version="1">MKQLGEKALHALYSIRRHLNLHNLNPKLAIKIFDTIISPILLYNSEVWGAYIKNDFNNWDNSQIEKTHLRFCKLYLGVGKKTTNIACRGELGKFPLIINIYKRLFKYIIHLNSLPEEALAKQAFLISKDLHSKRITSFYGNIMDILKSYNCNTQITELESIAIQTLSFIHDNIKQKYLNFWKHKLENSSKLKFYNTFKTEYQLEKYLSTIKNPTERKALTKFRVSNHKLMIELGRYQKIPREERLCEICQSGEVEDEYHFANWCKAYSNQRENFYTTLRNKLTIIIDQAQLVDIMKSTEHETILSLSKYISSCFTERNRYLEIGIAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HRE9</accession>
    <name>A0A7D9HRE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082075</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001411">
        <property type="protein sequence ID" value="CAB3988960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HRE9"/>
    <dbReference type="OrthoDB" id="8121249at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29389" checksum="B9F815DF33A4B7C2" modified="2020-12-02" version="1">MSAKQTKKDGDIKKQISELILGDGDFLKCIAEAVSSAIIDTMCVNESFIAKIADKISQNEKHTTKIKQELYESLSFDNTDLRAKITDLENNCAQLKKSYDNLQMAHDDLEQYGRRNCLIFHGVPEPPKDVTENTDAEIIKIVNDKLGVKIQVSDLDRSHRLRRKSPQIANSRPKPIIVKFNRHNTKSEVFSRKRNLKASGIGITESLTKKRLELYTTVSNHPEVKAAWTADGKVIALLSGSQTKVFLENHKDLTKLSSLIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HRJ8</accession>
    <name>A0A7D9HRJ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A061399</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001426">
        <property type="protein sequence ID" value="CAB3989060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HRJ8"/>
    <dbReference type="OrthoDB" id="5971203at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF46">
        <property type="entry name" value="INTELECTIN-1A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3989060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="756" mass="84708" checksum="FD748FFFB62836A3" modified="2020-12-02" version="1">MVKDRNHLNKLLLCIKQATHFYWKMMSNSGNSYGNYFDPARDCSSILDKIPDAKTGVYWIKTDNGPRKAWCDLVTDGGGFLLIGVQNSSRTMDVPSDSTLVHPLDLRHWSSSFGEEKILDFRVQIATSKSWSDTKAHWYYRFNTPRKLSKLLLFNDGNCDNIYPGVGDVKFVKDLQDNVVVTKKIECSRFDVHFHKSLGWGKMNECFRTPCKTGFNHLKLATSGAFSFSVESSKSGIINNSTKYIGCEKNKCCVCYGPSSDKDYCAPGCKAINGGTVLTDDDTEIHAWYWIRTSLPKRVWKKCMEYEKIEGGKTVKWHVDEHNKVPQQGPCSYPGDVRFNDGVAVVDNKETLEKLPNIEGLLSYRTDNKDLLLRGKHSWNRMAKENQILKLEAVLGTSQRKLEKVQTSQNELRKELTESKPKISDVSSKVLKLEAELGTSQRKLEKVKTSQNELRKEKTESKAKISDLSSKLLKLEAKLGTSKRKLRKDLTESKAKISDLSSKLLKLEEENKIYSSCKSALEKIGNAKHGVYKIKSLSVAYGYSNVYCHMTSMPGCSGGGWTLVMKINGKKETFHYGSSYWNNKATYNPGGLTGFDDVETKQATYWNTPFKEICLGMKVNNNLNFISISYQASSLYNVIADGSYRSTSIPVGRSKWLSLVRGSALQSDCNREGFNVHPPPHPRFTNLQAVRIGILGNEGDDGCKSPDSYLGFGGIAKNKRGYCGMPKTSNTCGNAGYCILAGANKEIPAMGYIFVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTF9</accession>
    <name>A0A7D9HTF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Gamma-aminobutyric acid receptor subunit beta-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A000294</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the ligand-gated ion channel (TC 1.A.9) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001609">
        <property type="protein sequence ID" value="CAB3990138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTF9"/>
    <dbReference type="OrthoDB" id="6019741at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005230">
        <property type="term" value="F:extracellular ligand-gated monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18990">
        <property type="entry name" value="LGIC_ECD_GABAAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.170.10">
        <property type="entry name" value="Neurotransmitter-gated ion-channel ligand-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.390">
        <property type="entry name" value="Neurotransmitter-gated ion-channel transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006028">
        <property type="entry name" value="GABAA/Glycine_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006202">
        <property type="entry name" value="Neur_chan_lig-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036734">
        <property type="entry name" value="Neur_chan_lig-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006201">
        <property type="entry name" value="Neur_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036719">
        <property type="entry name" value="Neuro-gated_channel_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038050">
        <property type="entry name" value="Neuro_actylchol_rec"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006029">
        <property type="entry name" value="Neurotrans-gated_channel_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018000">
        <property type="entry name" value="Neurotransmitter_ion_chnl_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18945">
        <property type="entry name" value="NEUROTRANSMITTER GATED ION CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02931">
        <property type="entry name" value="Neur_chan_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02932">
        <property type="entry name" value="Neur_chan_memb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00253">
        <property type="entry name" value="GABAARECEPTR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00252">
        <property type="entry name" value="NRIONCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90112">
        <property type="entry name" value="Neurotransmitter-gated ion-channel transmembrane pore"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63712">
        <property type="entry name" value="Nicotinic receptor ligand binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00236">
        <property type="entry name" value="NEUROTR_ION_CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 11" id="KW-0407">Ion channel</keyword>
    <keyword evidence="8 11" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="188"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="220"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="344"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="domain" description="Neurotransmitter-gated ion-channel ligand-binding" evidence="12">
        <location>
            <begin position="1"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="Neurotransmitter-gated ion-channel transmembrane" evidence="13">
        <location>
            <begin position="169"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3990138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="365" mass="42158" checksum="634CB0351564E6F4" modified="2020-12-02" version="1" fragment="single">EPVVVNVSYSVLGFRDIQEVDMTYMTDMYFRQEWQDSRLQHSLNCTLTFITGTKKPVDFIWVPDATFENSVTSYVHDVLIGNHKVDIYPDGRVFWGVRATARALCPMELSSYPFDVQVCPLTLVSYNYPANHVKYAWKGSSAVTVSDKKLSQFLVTRVETSETEAVYPIVMLAGFLFWVDPRATPARVALSLTTLLTTGTIWSSVNSRMPKVSYVKAIDIYFLVSFGFVFSTLLQYILLLTLKHQTHLRKLRKVSPEYPLSGKKMGQGNGGMNSSSSAKTDQALQAKQRMMQRYRSILIEQSEQNESKEESTATEVTLDPETLYYYKQKQEFRSILWLDKFSRVFYMFSYVLFLVLYWKMYKLDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8N8</accession>
    <name>A0A7D9I8N8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000733</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003780">
        <property type="protein sequence ID" value="CAB4000217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8N8"/>
    <dbReference type="OrthoDB" id="10039395at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="11144" checksum="5437025C93D01945" modified="2020-12-02" version="1" fragment="single">VSWKKIPRQLIEQKSRFPGQWFLFNCSISASDHVTLWFMKNRKSEEKLQVIDKKIILVSKNIFNITRLTDKDRGFYICRVCGHEKQIFVEILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAY6</accession>
    <name>A0A7D9IAY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phage antirepressor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A086529</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004186">
        <property type="protein sequence ID" value="CAB4001813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAY6"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014883">
        <property type="entry name" value="VRR_NUC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08774">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4001813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26567" checksum="DC6C81BCAC06439D" modified="2020-12-02" version="1">MEKLFRNRELNVSVRTVRCGDEVLFYAKDVAESLGYANPQKAVRDHVWKLNKEVLPSIRKTGSYELPDRRSLRYNQMILINETDLHNAIVSYIRDNYPEAVILPGLGEYQDTMSKRCDAWKKGYKGGQPDLIIENPMGKYKGFAIEFKSPKGTGVISENQDIWFRKLRGIGYMTMVSDDLVKTCIRINEYFGIADTDVVGTSSLKKTIRKAAVKKVVCDVKTYKPRFNSGKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9II71</accession>
    <name>A0A7D9II71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039723</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005561">
        <property type="protein sequence ID" value="CAB4006638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9II71"/>
    <dbReference type="OrthoDB" id="7701645at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="454" mass="51679" checksum="78F6118643835C6A" modified="2020-12-02" version="1">MDTLAAILSLVTPGAYMASIDLKHAYYTIPIADEQRKFLKFVWNEQLYEFCVLPMGLTSSPRIFTKVMKPVLATLRQKGHINSGFIDDFYFQGQEFSDCAVNVSDSVRLFISLGLHVHPDKCVLIPSQELLILGFLINSLLMIVKLPLEKKVKLRDLCLQALRGNKLTIQFVASVIGTLISALPGVEFGRLHYRNLERDKINALARNNGNYRSFMHLSEAAKQELQWWTTHVMHSSRRLRHPVISYIFQTDASDLGWGVTCTTIPQLQSQGLWTSEQRTLHINVRELGEAPNSLSFPKGAFERKPPANKHHAIWDVQTVLAYLKTFTPNSGLSLKELSHKLTMLLALVTIQRKQTLIHLNINNGCMIQSDVQFVFVLDKHIKQSRPNYSVPPVIVPRYNLDSDVFPYLCLEAYLEKTKHLRQSVNLLVATIKPHRAIGSQILARWIKIVLAGWY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJV6</accession>
    <name>A0A7D9IJV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Multiple drug resistance-associated -like transporter 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A023806</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006462">
        <property type="protein sequence ID" value="CAB4009468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJV6"/>
    <dbReference type="OrthoDB" id="5981648at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF330">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C MEMBER 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4009468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9057" checksum="146C0E30832FE864" modified="2020-12-02" version="1" fragment="single">VLCIDEATASVDFETDKLIQQTIRDEFQSNTVLTIAHRIETILDSDRVLVMDKGQIAEFGSPDELRRNKESLFSTLVNES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9INF9</accession>
    <name>A0A7D9INF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A077588</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007636">
        <property type="protein sequence ID" value="CAB4012806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9INF9"/>
    <dbReference type="OrthoDB" id="6611240at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019426">
        <property type="entry name" value="7TM_GPCR_serpentine_rcpt_Srv"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050569">
        <property type="entry name" value="TAAR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249:SF372">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249">
        <property type="entry name" value="HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10323">
        <property type="entry name" value="7TM_GPCR_Srv"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4012806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="31851" checksum="0770462BE7855CDC" modified="2020-12-02" version="1">MIYLKRSPKFISLSSQAQHQFVRMNERSFSALKRVKNYLCSTMSGDRLNDCMLLAVERDLTDRIDLKKLAIIKVSVVDLLVGIIGLPLLTFVLASNAKGDANCTVSVLAILAAHLITGYSMITLSALNFERYFGIIHPLLHHRNIKRLKIAIFILLFLITTAYVYIRIFLTAKKRSPLQNIPDATAGESKESTMKTKKDNLREIKLAKSCCIIVFLFIFSFLPLSIVNIFLATPLGAVKFRIMQACCVTIVMLNPTLNSVVFFWTRPLLRKAKKIFRKICF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ITU1</accession>
    <name>A0A7D9ITU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TNF receptor-associated factor 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077163</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007796">
        <property type="protein sequence ID" value="CAB4013189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ITU1"/>
    <dbReference type="OrthoDB" id="5982841at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008737">
        <property type="entry name" value="DUF1758"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05585">
        <property type="entry name" value="DUF1758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="649" mass="73407" checksum="307699B00BF8DF57" modified="2020-12-02" version="1">MSDLTKKKQSRSGHRAYATRTLAKVKKSMDNIVPEIAVELAQLKLTLKEKIETIKKLDETILDMLEKEEDVESEIETSSEFISEMYGGFAAIDDALKKLDEKKSSEVPVEITTATNVSQNSHYTRVKLPKLEVRKFSGKIQDWREFWDSFESAIHKNDALSDIDIFTYLRGLVEEPAKSAIAGFALIAVNYSAAVNILERRFGNKTVVQRAYINELLNVKPVFNANDTERLRKFFDTVESNYRGLEALGVNNEIYSEIVVPTVLNKLPEVVRLTITRNKEHLTWNIKDFVDALQAEVELRECHALTSLPANNDGSNYTRRRREPSTANTLFAGRMDCAYCRGNHKHEDCTRVTSRKERLELLRKFHRCYNCINKGHLVRECRARHNCNACGGSHHISICVKRFGERNDEKKGEKKQEENETVHVGNVHVGTKCRVALQTAQGILKGEKVKRVRVLFDSGSQKSFVTSRAMNDAKLHVVRNEWLEVSTFGGATKEGKMREVVDFEINSIKGNRSVRVEALVVPQICQVRNEHLEIVKGEYSHLKDLWLSDVCKSNDVLEIDILIGADNLWAFQSGKVVKGKDDEPVAVDTCLGWVVSGPLKGSSENECANVYFVSQVGNQSLNNIGFDVNKLWDLETIGLGNAMTYMKPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J416</accession>
    <name>A0A7D9J416_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077914</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011415">
        <property type="protein sequence ID" value="CAB4021402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J416"/>
    <dbReference type="OrthoDB" id="9989813at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020864">
        <property type="entry name" value="MACPF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01823">
        <property type="entry name" value="MACPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57414">
        <property type="entry name" value="Hairpin loop containing domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="279" mass="30429" checksum="1385B3BBCB427C40" modified="2020-12-02" version="1" fragment="single">MSSQSYKTASSRDISVSAQASYSGLVSVSGGFSLDKSERQAASQFSKEVETTTITVGAAPPSNGEAAYWASTVKENPVPTSYKIEPISNLFTNVFMEGTGINYNLLRKKLVGIEKLYCQQLLQAGTVNSCEESVSVGITINDFYLLNSISTFAAATETSCISKCFENRHCLSIAYISNSNECHFYGDANKKHEISKEANAKAKIIIFPTKINDQKTDFVVEHLRVSTKARPASNKTVDAQSCKKACLQDTSCDVFNFCSDQTYCKGEVNNCKLYSSKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J461</accession>
    <name>A0A7D9J461_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A062982</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011451">
        <property type="protein sequence ID" value="CAB4021470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J461"/>
    <dbReference type="OrthoDB" id="5978043at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000023">
        <property type="entry name" value="Pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="522"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="522"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="571"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4021470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="581" mass="67150" checksum="43D01BB03C77AABA" modified="2020-12-02" version="1" fragment="single">QKINSQGIQPIQEKVRAITNAPAPTNVSEVRSYLGMINYYEKYLPNLSTILAPLHSLLEKGKSWEWSEKHQEAFRKSKELLKSSHLLVHYDPERNKEALAIVFGVKKFHQYVYGRHFTILTDHKPLERVLHPDKMTPPMAAARIQRWALILSAYDYAIQYKEGIQNANADALSRLPLPDTRGSTPVPEEKILLMELLETTPIRAEQVKNWTKRTPIFYTPSSWPSKCPDGEFQPYFQRRDKLSVQDDCILWGNRVVVPPQGRSQVVDELHETHPGICKMKSLARSDVWWPNMDNDFENKVRTCNNCQINRNNPPEAPLHPWEWPSRPLERIHIDYAGPFLGEMFLIMVDTYSKWLEVHPTNVATSRATIEKLRSTFAIHGFPKTIVSDNASNGLAERAVQTFKEGMKKMSNKESLETRVSRFLFKYRITPHSTTGIAPAEMLMSRKPRSCLDVLHPDVGQRVQDQQQKQNELHDQHAVDRQVRPGDLVCSRQYGKQQKWCPGVINIQTGPVSYTIQLEDDREVHRHQDQVIHRETPEENENDVTNPDINKQPVPDQQVVSEEKAVPAARYPQRDRQTPDYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JA98</accession>
    <name>A0A7D9JA98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062273</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013660">
        <property type="protein sequence ID" value="CAB4025537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JA98"/>
    <dbReference type="OrthoDB" id="5954387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="617" mass="70308" checksum="6F7A2B35B1C1049F" modified="2020-12-02" version="1" fragment="single">ALKSHKPKHWDEFKKERNLVSRLVKQSHSSYLNDVIGASLDTNPKKFWSYVRTSKSESSGIPPLKFNDKLCVSDKSKADALNSQFHSVFTRENAPIPNKGQSPYTSISDLIINSQGVAKQLSELDPSKACGPDEIPARILKELSPSISHWLCFIFQQSYDSGTLPPDWSKALVSVVFKKDLQSNPANYRPISLTCLCCKVMEHIILSHVSKHLAYHDILINEQHGFRKLFSCETQLITAINDWAKSINQKKQTDVILLDFSKAFDSVPHLRLMSKLDHYGIRGLSANWIKAFLSNRSQVVSVNGSHSHPQPVISGVPQGTILAPVLFLLYINDISENIKSQIRLFADDGIIYREINNDQDHVTLQEDLDNLNNWANKWQLNFNFSKCYHLGITNKRVPETYSYMMNNQIISRVSSTKYLGITINHNLNWNKHCVIICSKANSTLGLLRRILGECSAAVKSRAYTSLVRPQLEYASTVWNPYTKRNINKIEMVQRRAARFVFNDYSRASHVSPMIDHLGWDNLQQRRLLHQATMFYEIHQGLVGISLPDDVCPLTRASRLPNICPYRQIQSCVNVYKFSFYPRTIVTWNHIPFNNLCQSTPSFKTLAMPSIKSLNVAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JEE7</accession>
    <name>A0A7D9JEE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014747">
        <property type="protein sequence ID" value="CAB4027346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JEE7"/>
    <dbReference type="OrthoDB" id="10257471at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="630" mass="70917" checksum="413AE7E00117A6E8" modified="2020-12-02" version="1">MGTDKALRINHGHVVFVGSKGSGKSSLYQCLKSPNPQVIDGLSCSVLVEDWRPFSNESPVADECCEYFNENLSENDLDASVSVWDICGHEPLWTIQQLCVPETALFVLVFNVRNPRDAGLLPQWVQIIQSKSLGAEIIIAASNCEVSEDSCQNVLDEIKKMENGVLKEINEELAILRELQSNIWVKNRIEKLERMIKKRPNVCSTVYLTSAVTGKGLSDLRRAILEHFFDAGKSSNIHNFNEQELGLIKKLRPLHDGKGIVMSGQDFKTMASALGFHDDEELESTTQAFVEKGLLSRVNIAESFEEPNNTIIITDPCCFANACAMIHRDENPQDFVNKLQKSTLVQRFWPTSTRPNDWTLRSAIDDVVSRGMIRESFLPLCWQIWNMNEEDIKQLLPAMLKLGVILEGAPKAGYEIELALSYFKNLAVTKRYHLPLLMKLPPEPPAGIWPNAAPSSTVTVDWHYQFQEGFCDDLTLYILAASKNFNPSKTTIAHWQNGLIVRLGDVDILLVSKPRIYQFCARCTVTNGNKQALHMAWATLAQFIHITESYLSNFPGLYYRFGSSSIVNSSSRSVHQLLSDHINTSENSDQNLWLIPPIDFQKKEEPSVPLDLQAWMQNISGRASVLLFGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JLK4</accession>
    <name>A0A7D9JLK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chromosome-associated kinesin KIF4A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A058416</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018305">
        <property type="protein sequence ID" value="CAB4032316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JLK4"/>
    <dbReference type="OrthoDB" id="3176171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005875">
        <property type="term" value="C:microtubule associated complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007052">
        <property type="term" value="P:mitotic spindle organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051231">
        <property type="term" value="P:spindle elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027640">
        <property type="entry name" value="Kinesin-like_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47969">
        <property type="entry name" value="CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47969:SF15">
        <property type="entry name" value="CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25764">
        <property type="entry name" value="KIF21A_4th"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="52"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="94"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="65"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4032316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="32834" checksum="9CED1D02308C426C" modified="2020-12-02" version="1" fragment="single">MSKDKLKQKAEQLKEKIQSRGLDISFDHDEDKENVESIDMVKHIQMKVEEMDEEANMCTSVAPETEERKSLEGDHAEHPEIANSSFAVQHAFRKAELCKQLQELTKALAMKEEIASKMVDNERITSMRKQYEVTVKELEHIIEKLEKEKAELNSALNTKKANPSALKKEKERLRELETQLSDYKKKQIEYKRLQKTKEQSDQTVTKLDAEIKGMKQMKVKLMRQMKEEAEKFRQWKLKKDKEINQLKQQSRKRQFEYKKLESVHIKQQAVLRRKTEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JNH1</accession>
    <name>A0A7D9JNH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Supervillin-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065261</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018279">
        <property type="protein sequence ID" value="CAB4032277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JNH1"/>
    <dbReference type="OrthoDB" id="5976901at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005546">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051014">
        <property type="term" value="P:actin filament severing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008154">
        <property type="term" value="P:actin polymerization or depolymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051016">
        <property type="term" value="P:barbed-end actin filament capping"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.20.10">
        <property type="entry name" value="Severin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029006">
        <property type="entry name" value="ADF-H/Gelsolin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007123">
        <property type="entry name" value="Gelsolin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007122">
        <property type="entry name" value="Villin/Gelsolin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11977:SF45">
        <property type="entry name" value="SUPERVILLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11977">
        <property type="entry name" value="VILLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00626">
        <property type="entry name" value="Gelsolin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00262">
        <property type="entry name" value="GEL"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55753">
        <property type="entry name" value="Actin depolymerizing proteins"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gelsolin-like" evidence="1">
        <location>
            <begin position="13"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="533"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="533" mass="60556" checksum="DD0E3165D6079E27" modified="2020-12-02" version="1" fragment="single">MSELCGKIPKINMLNSDKAFVFDFGTEVYAWLGRTSDKATRSKAVDLAIEVHKSPFEVHNSLNPITPNMSKDDDEPRQLKRPSWALFGRMTERAETILFEQKFLDWPDVATKMKMDKEKDILNKNLSKGYAKRMAKVEKSEYQAVELVPYDGAKMGEEPPPVKLILEGVNVGRGRGSYDETERRNLTVTTNSVTVYHSSEKESRQLEEKEWGHFYSAESYVIRWSYSVKASGIRSLKGGESKRDTTGRDQIAYFFWHGRDCSASGKGTSALATIELDSDKSPQIMVDEGHESACFLNMFDGQMIVHHGKLDEAKSIEEDNVLMYCVHHDDEREISLTQVEARSSNLRSRSSFVVVVIDEAVGICVWHGAKSTKEKKQGALRGAKRLANWFQGIFEINKVDMVEEEEGHEGGLFWKALDGKNDYGSLQEVSGKCDNRVRLFTFLSTEGPFLAREIFNPTRGEHVSPYPFRQANLYDATQPALFLIDAVHEMYLWQGWWPGNPEESESATTTGSAEFRWHRDRKLAMQSVQSYAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JXQ1</accession>
    <name>A0A7D9JXQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NEDD8-activating enzyme E1 regulatory subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042817</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023879">
        <property type="protein sequence ID" value="CAB4038160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JXQ1"/>
    <dbReference type="OrthoDB" id="1708823at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="Activating enzymes of the ubiquitin-like proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="194" mass="22277" checksum="A17554555B0DF479" modified="2020-12-02" version="1">MHVPASVLLQCIVVFLQSPPFWILCKALKEFVNETGNLPLRGSIPDMTADSKRFIELQNCYHEKALEDVQNISEKLHAILASVGKKTNFIEDDEIRLFCKNAAFLRVIRCRSLEEEYKTFPKCLDGLIGEPDSDVVFYVLFRAVDKFYSSFDRYPGEVDEDVEGDCEKLQACVTDLFKEWGIQSGIKEDYVKEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K2H8</accession>
    <name>A0A7D9K2H8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NACHT, LRR and PYD domains-containing 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A061806</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025994">
        <property type="protein sequence ID" value="CAB4039877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K2H8"/>
    <dbReference type="OrthoDB" id="120976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051261">
        <property type="entry name" value="NLR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24106">
        <property type="entry name" value="NACHT, LRR AND CARD DOMAINS-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13516">
        <property type="entry name" value="LRR_6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00368">
        <property type="entry name" value="LRR_RI"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50837">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="937"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4039877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="937" mass="106172" checksum="E37BF3C52D6C52A8" modified="2020-12-02" version="1" fragment="single">QENALLGIFVSIINVVIHTERAPHKFTKDMERHEIFDVYTQVPLESISLENIKDLFYPNKDTKGNFPRSILVIGRPGIGKTILTEKILRDWAEATNQINKYYCEKIAFFFKLRWFNNTSENISLKTFLQFGTGLSDEKFESIYEEITKKPQKAILIFDGLDEFHGNRINCSDQSRMIPNDPKTCMSIMNLFVKLVLGDLLKGATVLVTGRPTADDFYSKLNFNRKVEIIGFTHDKIEEYVRQCCKENNKTGHEVKIWKHIKSSSELLNLCYIPVNCRIICVTLSECLSEPKNNTNALPKTLTKLYQDALGSYVKYDNNRNTELGNPYMTTKEALKEFQILAFGGMKNHNLIFDQESVDEQMKKSCLLNSLSNPIFPIQTQFCFVHLTIQEFLAARHFIAGLLERLKVTHGEIKLNHNHVFAMTCLMEVDNGKIAKEVCETTALNNVVRLDSAKYRASPSEMAVVSFFCKHMKNLASLELEPANAGSVQEIQELLQKRCIKQLELNGIYELVSSEPVFSAFIKLNCTLNHEHTKLTSLKLQLFSITDEELPNMCMFFENGHASHLEELYLGYATIGLFGISKLCEALNNCTELTCVYFLCVVLKYEGASVLFDTLTTGLRKLTELTFTRCSLTDRCIPSLCKALQDERCQLTVLSLWNNSISDKGACILCKALQDEHCQLTDLLLGESAIGDKGACMLFEDALTKEHCKLTKLNLREFSLTDQCIPSLCKALQDERCQLTALSLGNNAIGDEGVDRCISSLCACMLFEDALTKEHCKLTKLNLEEFSLTDQCIPNLCKALQDERCQLTVLSLRYNAIGDKDVGMLFEDALTKDHCKLTELDLISCSLTDRCIPTLCKALQDERCKLTELWLNLNEFTGKGKTLLGDLRNTCTIVNMNKYLHGGPVGDFPSFRKLISIHLNFYINHLGYVLSNVVYDVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KD39</accession>
    <name>A0A7D9KD39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024029</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035068">
        <property type="protein sequence ID" value="CAB4044471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KD39"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="265" mass="30226" checksum="F498DE092031494B" modified="2020-12-02" version="1">MVSGISAAMLLDRDRKSCGYGWLISKDRKGVYVMTTSDVLHRIKHDEDDQYEKLHFFIESCNDKEPTPCSIIKTEKKFVIVSSKKGSVLDYVVLRFKTSSKVASEKPLNVSKQCPEPLETVGVPYSSLGCPNKSFCQRSIVLQYPEDLINWLIKVGSRSSFHSVAKRAPSPGCDPTIDWKKARDLREVLIPYWKTDHNANECFSGLPLFTFQDSQVVGMCSRRVFITEEIKENHFINFGIRIDQIIADIDSKNPRVARSLFPDYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXR8</accession>
    <name>A0A7D9KXR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034687</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012021">
        <property type="protein sequence ID" value="CAB4022519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXR8"/>
    <dbReference type="OrthoDB" id="10234324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="91"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="93"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="708" mass="80625" checksum="657B28088EE7B0CB" modified="2020-12-02" version="1">MLRARSYKSGIRRCPLINCTYRNFRLDNLKTHLKSGRHKINNIVVLNKIFEIVRSNSLPEGNLLRVEDNEVIQVAMPMDSQLRNTTLIQDQVASTSGSTRSQSSAAPQETLHSQDPIASVTADTDEQFTDPLTVTDPLQPQATASSSSQEIHSLQEAVASLHTAIQKIKINERDMKTVLVDAKAVLESKLSEIDQRLDKADNVATIVDNSTQSLVQLQMTYPWLQVKLRSPPNAPLGACCLCQRHSLQIRSLRGYSSMQNWLDCSVVLDSDHRAQRVKNHEQSECHKSSKSAEEQRKRNAILFSSQVAQKKETEVTERFLLRCYGLIQCHVPYNRYPFMTYLHHLQGVELRSLVQFIHSPNPSTGRLRHCHLSFDKVTVEHITRQVVNLRILDLNGELVCVNGNQSVISRHEDHVPDYTISLGNIPSADHTSDARGVFCHVYDFLHKQLEMSNETISHIVSLSSSDCEAVYTGRIQGLQRLWKEKFNRAHLHFADRAHKIESMIGKIRKEAEMRWLDEILSQLDSMISKICQSPKQHRNRRHAATLADSLVKSMKRLVETRFIRYLVGSVDAVLTNAYVLELLWQEQAAEGDNEIRGHLKNLVSPLFLSTLLILTDVFSQSAFTSEAAQSDLYPLWDDKANVDKFIGNITKMNEMPVLENPLNRRLHLQYPSIQKGNFTPNFSKPISKSTFYNMMFNSNLGYDIVHNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L229</accession>
    <name>A0A7D9L229_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protein-glucosylgalactosylhydroxylysine glucosidase</fullName>
            <ecNumber evidence="6">3.2.1.107</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Acid trehalase-like protein 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A002575</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the hydrolysis of glucose from the disaccharide unit linked to hydroxylysine residues of collagen and collagen-like proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(5R)-5-O-[alpha-D-glucosyl-(1-&gt;2)-beta-D-galactosyl]-5-hydroxy-L-lysyl-[collagen] + H2O = (5R)-5-O-(beta-D-galactosyl)-5-hydroxy-L-lysyl-[collagen] + D-glucose</text>
            <dbReference type="Rhea" id="RHEA:11068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12753"/>
            <dbReference type="Rhea" id="RHEA-COMP:12754"/>
            <dbReference type="ChEBI" id="CHEBI:4167"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:133443"/>
            <dbReference type="ChEBI" id="CHEBI:133452"/>
            <dbReference type="EC" id="3.2.1.107"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 65 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.107" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020012468">
        <property type="protein sequence ID" value="CAB4023374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L229"/>
    <dbReference type="OrthoDB" id="200349at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047402">
        <property type="term" value="F:protein-glucosylgalactosylhydroxylysine glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.50.10.10:FF:000023">
        <property type="entry name" value="Protein-glucosylgalactosylhydroxylysine glucosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.420.10">
        <property type="entry name" value="Maltose phosphorylase, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005194">
        <property type="entry name" value="Glyco_hydro_65_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005195">
        <property type="entry name" value="Glyco_hydro_65_M"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11051">
        <property type="entry name" value="GLYCOSYL HYDROLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11051:SF8">
        <property type="entry name" value="PROTEIN-GLUCOSYLGALACTOSYLHYDROXYLYSINE GLUCOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03633">
        <property type="entry name" value="Glyco_hydro_65C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03632">
        <property type="entry name" value="Glyco_hydro_65m"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="Six-hairpin glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 65 central catalytic" evidence="9">
        <location>
            <begin position="2"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="Glycoside hydrolase family 65 C-terminal" evidence="10">
        <location>
            <begin position="292"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00051415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00053339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00066430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00071505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00079982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4023374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="43615" checksum="764133FCF7C861D9" modified="2020-12-02" version="1">MYPTLLMLYPELARSLVLYRFQRMGAARKNAKTHNVSGTMFPWESAFTGCPVCPEEVYSNYEIHVNGDIGFAVEQYWMVTHDQEWLKEVGIPLISGIAEFWASRVTYDDVANDYVINAVMCPDEYHSNVNNSAFTNAVAKRNLEFASKVVPSAPATWSDIAQRLRIPYNTTLRYHPEYDGYNLNVTVKQADVILLGYPLMFNMTQEVRENDLVIYEPRTDPDGPAMTKAMFAIGWLELGNVRNASTSFRESYQNVREPFKVWTEYPSGDGAVNFITGMGGFLQAVVFGYGGLRLHPDEIRLNPKLPENVTKLCVRGLHYRGNVIDFTIGSTESEICVRSADIEARLLVLQDVESGEEYYLDVGKVVTFRNGPVIVREYEQNTVVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L7K7</accession>
    <name>A0A7D9L7K7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A034210</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020013580">
        <property type="protein sequence ID" value="CAB4025398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L7K7"/>
    <dbReference type="OrthoDB" id="10064239at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.690">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="376"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="702"/>
            <end position="994"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4025398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1051" mass="122676" checksum="15008A0A54005992" modified="2020-12-02" version="1" fragment="single">MALSRLTTERVLAQIERVIQSNHEFRLNDSVKVNLVHVEMPNGGTGTKRSEINLEKHLVKKGSIIRIQNKDDLCLARALVVSIAKIENDSRYKSVVDHRRPMQTRLAHDLHEKAGVPIGSCGVDHVKQFQTYLTDYQINIVSKEHQNSVIFSGPDKEKRIYLFLHDNHFDVITSMPAFVARKKYCHTCKKGYDHVKNHLCGDTCKLCHFQNCPIVSWISCSDCDRIFKSQECFDRHKQNVGNAKSICLSTAKCPDCNLVFDRTRLRPDLHHCGLKRCSTCEKYVDIKDHQCYMQPVREKPAHETSMHDDEADEDVHESGYNELLFFDFECIQENGTHEPNLCVIQNEAGDEWLFQGDNTRNEFCEWLFTKEHEGCIVVAHNFQGYDGYFIQQYLHENGVIPEVIMRGAKILTLYVPMLKIKFIDSLSFIPMRLADFPKTFGLNELAKGYFPHLFNRKENQNYIGPLPPSPYYHPNGMNPAEKETFLKWHQELKENNYVFNFQEEILSYCRSDVDILRRCCLEFRELFRDVTDIDPFEKCLTIASACNLVFRTNFLKENTIAILPPHGYHPGIKQSNIALKWLSYTAEKNDVYIRHKRNGGEKTVGQYSLDGYDEETHTAYEFHGCFWHGCLKCYARDTVNKVSEKTMHDLHQATMEKTQYLKDRGLHVVEMWECDMKKELEHDEDMRQYFEDYDVVDPLEPRHAFYGGRTNATKLFHECKEDEKIRYVDFTSLYPWCNKMTKTVIGRPRIITENFDDITTYFGLIKCTVLPPRGLFHPVLPYRTQGKLMFPLCKACADTCNQAPCTHSERERAIQGTWCSVELEKALEKGYNILQMHEVWHFPETSDVLFKDYVDTFLKIKQESSGYPKNCVTEEQKQQYVDEYLAVEGIQLDREKIEHNPGMRALSKLMLNSFWGKFAQRSNMAKVELIKDPQVYFDYLSSDEINVLDVRFVSDEMVELRYEYNENFVEPNAKTNVVIAAFTTAYARLKLYGVLDQLQERVLYYDTDSVIFGWHAPYPLIFSNLVTCSDRNCGYILQTENEQQKYDLERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LAA2</accession>
    <name>A0A7D9LAA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Adrenocorticotropic hormone receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A065439</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015857">
        <property type="protein sequence ID" value="CAB4028979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LAA2"/>
    <dbReference type="OrthoDB" id="5982486at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22750">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4028979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="350" mass="38658" checksum="0F79696BA4CA7357" modified="2020-12-02" version="1">MLHATGTIGPLSNNSSTYFKCDADPFKDLPSFDAAAYISRVTFATILAILILPTIFLNITILIAIIKNRTLWRSSHILIGFLAVTDALVGAFSMPLLLSTVLIEIIYGRSSYYKQVYCILSQAALNAGDLGIGWSFITIALITLERYVAIFAPFWYRKYVRTSVVVKTTLVTWVIWAAAVVILILNITLEFAVGVVILILVVTVYVLAVPAYIRILYLLKKIESSPIRETDSRPTIDRKGSITCAIMLLCLILCYTPLIVVSLVLVTKGVSKTVLTYILPWTRLVVLANSFFNPIIYICRIALIRRSAKNIFKRFYKKASPQSGTAAPSVPAVELGASNRAAVISHDSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LDP3</accession>
    <name>A0A7D9LDP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059362</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017117">
        <property type="protein sequence ID" value="CAB4030759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LDP3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="75" mass="8416" checksum="BDEEF78DBCF0B4A3" modified="2020-12-02" version="1">MENFLKEISSHEPDLTPDPRIKWKTSPEEGSEDSKDGSITSPLVRDLADSIPEGQDGIDIAEFESCEVFEKETYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LMD4</accession>
    <name>A0A7D9LMD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018950">
        <property type="protein sequence ID" value="CAB4033102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LMD4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="81" mass="8566" checksum="50C306436912FF7E" modified="2020-12-02" version="1" fragment="single">GFASAMETAKAEIQKQSDHAGRSYRLGAMGNVQEISVAERNKIAFALSSSLAEIPVVAFTASRAFIAYIGFNVAVVSETVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNG4</accession>
    <name>A0A7D9LNG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007810</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021842">
        <property type="protein sequence ID" value="CAB4036257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNG4"/>
    <dbReference type="OrthoDB" id="6626734at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="344" mass="39258" checksum="7291489EBB654919" modified="2020-12-02" version="1">MLGVLRRTCTKLMDMKARRTLYLSLVKSQLCYAREVWSPVNSVQISRRVEKVQRRATTWITMTKRGELSYRERLLALDLLPFTYDREVRDLVYFFKSLFSYIDVNIDNYVSFTSTIKVLVEYDSSNDRVKWNGNFENLKTFVADLFGEQSKWISPGGRAKSFRSSQVSITWYPLKKSLVFQGQAGIKLKDLIIGLAGSNMAKDCGNNTLSSVIDQENFDQLAGNVTNIELSVKQIGVAMKKLDKDFQLMANYIKDRDRNLRDTTRDIGVQTDFNLVSEMRAQSQTVCSVSHSELSTELEGAKLDIVLMESKIVCGLLTNTQKMEQIRIELVDQNKALSSKVEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LYD1</accession>
    <name>A0A7D9LYD1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A039809</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026788">
        <property type="protein sequence ID" value="CAB4040431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LYD1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="3">
        <location>
            <begin position="81"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="627"/>
            <end position="754"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="770"/>
            <end position="808"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="638"/>
            <end position="648"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="659"/>
            <end position="668"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="678"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="700"/>
            <end position="710"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="770"/>
            <end position="780"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="781"/>
            <end position="803"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1030"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4040431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1030" mass="114840" checksum="BC65F8B08B6AA0E6" modified="2020-12-02" version="1" fragment="single">TVINPKSTTILGWIWNSGTLSASPHRIATLASCQKPETVYRLRSFIGAFKVLSRVIPGCSSLLSKLDDAVAGRQSKEQIQWTDELHAVFCRAQAALSAARTITLPKPEDQIWIVTDGAIRSPGIGATLYVTRNGKLRVAGFFSAKLRGSQVRWLPCEVEALSIAVAVKHFSPYLIQSHHQACILTDSKPCVQAYEKLCRGEFSASPRVSTFLSTVSRYQASVRHVSGSAILPSDFASRNAAPCEDEACQICSFTKQTQDSVIRRAAVQDILSGVEQLPFTNRATWGPIQAECPELRRTRAHLLQGTRPSKKLTNVTDVKRYFLVATIAKDGLLVVKRNEPLVPSRECIIIPRQVLEGLLTAPHIRLSHPSSHQLKVVVKRYLFALDMDKVVNRVSESCHHCAALRKTPTARIEQSSCSPPSTVGVAFAADIAKRSKQLIFVLRECVTSLTATTLLENEHHDTLRDALIRNRSCEEPQQESCCRKSGTRSGGPVSHVTLAVATANLNSRIRTRGLSAREMWSQRDQFSNEQIPLQDQDIIMKQNEQRTSNHAHSEKSKAPVAEFRTPERITVGDLVYLYSDRNKTRARDRYLVVEVKGPFCNVKKFVGSQLRNTSYHVKISECYRVPSELKRSRQSTPNDEDSSADEAESSQPPMLSQVTPPPPAPPSIPTAISTPPSQTSHCNEPSVNANAYCKPSNLEGEPHTEDESRGNEYVNGPGESVPLRRSSRQRRPPERFGDYSIQSGEKVQSSKENAENQEYIRDAFCGKEGHAQFHPQKSDITDAQTSHTSQEPKSPISVSSTGTLDLDPNEKINNFSQSEVYHQKPSKEKADPSWISTGVRKWHKMKSVGKNKQGKLAQHFSLQSHKASLAAYCHYLKKTKHVDIQLDKAKRAAQIQEAEDLECNHKVIHILLNITRTLAWQALPFRGDSNEEGNFYQLVLLVTELREKFVEEVKSAGMFSVMTDTTPDEEHTDRRSVVLRYVKDAGKPTERLLDVRETVDQTGLGQAKDILSTIEQCGVDTNNLCFQSYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LYJ2</accession>
    <name>A0A7D9LYJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083571</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027765">
        <property type="protein sequence ID" value="CAB4041106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LYJ2"/>
    <dbReference type="OrthoDB" id="5983036at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="68" mass="7486" checksum="22BD9250BF10615F" modified="2020-12-02" version="1" fragment="single">MTQLKQKHPEPQPAKLGSVLFGPLNNEIPESIYSQINGEMARQAALRTKGSGGPRLVSMLTALEQCWH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZU5</accession>
    <name>A0A7D9LZU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A018605</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027943">
        <property type="protein sequence ID" value="CAB4041206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZU5"/>
    <dbReference type="OrthoDB" id="2668416at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="96"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="96"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="108"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4041206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15520" checksum="55628DB43DFD0B6E" modified="2020-12-02" version="1" fragment="single">PSDPILPWVQKAFPREGLTRHQKHFNTCLSKARFVVEHAFGRLKGRWRCLMKRNDATLKYVIAQISACCVLHNLCKLQQDFLEEWWLLPEMNECNNQDDDNGDDTEDKDDHNGDDGKEDGCAINIQNTLMNSLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MB61</accession>
    <name>A0A7D9MB61_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042248</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035995">
        <property type="protein sequence ID" value="CAB4044738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MB61"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="14120" checksum="3F371F137514C53C" modified="2020-12-02" version="1">MSSDEDSDNRSQPSTSSENSREKDFTFSDDEGVSADIGTSSEGCDAGATGCERKDEDEDNSDEEVISAKTSDEVSGAAAMVDESKDGNEECSDDDFIIFQDEGPFAICLKLNTALENLGLSNAGCFKECGGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MJ10</accession>
    <name>A0A7D9MJ10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020049696">
        <property type="protein sequence ID" value="CAB4046306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MJ10"/>
    <dbReference type="OrthoDB" id="7698480at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19691" checksum="CD34EB2C3B240F27" modified="2020-12-02" version="1" fragment="single">MEGNLLRVLMDLHETTEYVVRGKEGESEPWMPERGLREGCPTSPHLFNIYHQAVMRVAQKERKEEAKRNRKDVGICFKWVPGNAIPGERLWEKSHSEAVEMWVDKSLFADDTTIVGDESELEKGVEVTKWVMGEFEERNNDGKEEELKFGEEESKDVRMLGCWMGWTRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FCE2</accession>
    <name>A0A6S7FCE2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064665</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000017">
        <property type="protein sequence ID" value="CAB3976855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FCE2"/>
    <dbReference type="OrthoDB" id="3598281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31025">
        <property type="entry name" value="SI:CH211-196P9.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31025:SF9">
        <property type="entry name" value="SI:DKEY-286J15.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18564" checksum="3367CAE91642F8B9" modified="2020-12-02" version="1">MAMARAVVEDFPFLKDEEGQGFIELDFALVLPESVSDNLFLKWTPSFANKVIKYAEDQAKWQVYLGINMEQINSGKCLERSNLVEAVDSCFKLFYVLDMEYPWQSNVTWEFFQKVVYCLEDKTPRKTTSAVISMRATLTHMHSGPLEVCMYLINFVKYVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FI59</accession>
    <name>A0A6S7FI59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000183">
        <property type="protein sequence ID" value="CAB3979274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FI59"/>
    <dbReference type="OrthoDB" id="5956565at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="27784" checksum="5C6AA4BE45C8DDA0" modified="2020-12-02" version="1">MEGPNVHAGIAKMLSRGQKQELHTLEDIFRQKERDLENGILNFTSRDKDRGPVLRTKAEEDRMLTEMHFTSNIIHVKISRCNSFDDADVCDVTLAPKSPKLLSAPLPSLTFIRSKYHPPMPDEMFVSGVEAERQQTETRALGNDTAHALADRRASYNRKLQTLAEDETNFVQSYIEIAKEESQLQLSENVAESSATETAERRATLWRRCAAMAEVLAKEEAERLLWKKMFCVAAHHVYGNKAFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLL2</accession>
    <name>A0A6S7FLL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075209</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000064">
        <property type="protein sequence ID" value="CAB3977713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLL2"/>
    <dbReference type="OrthoDB" id="5987636at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="25959" checksum="FAC47BFD58A72F7F" modified="2020-12-02" version="1">MLKLNLLCKTSSVFDTDKEVWVPRNVKCLGVDVQLSLSNVSNESIEKFVKTLDIGCVCQIPGVSGVTRTITGIVFMIIDLHLRLPHLCRQLVWFNGNTNHFIFQFFDDGAPETSQLSMSIGSLTFWNLGEWVRSREFQCLLHCVSLSEKHNVLELLWQQHTEEMLLLESSVFVVSGKECTLEFQPSADMSWQSWACNELNQAAPYPSPYANVHKGNMDTMGGSIGHSSADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNZ3</accession>
    <name>A0A6S7FNZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ankyrin repeat domain-containing 66-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A017475</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000063">
        <property type="protein sequence ID" value="CAB3977689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNZ3"/>
    <dbReference type="OrthoDB" id="194358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050776">
        <property type="entry name" value="Ank_Repeat/CDKN_Inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201:SF15">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20169" checksum="56825976D413CD29" modified="2020-12-02" version="1">MAERHSSAQVVMELMLHEAAANGDDRRIEELQIYIKRGKILINQPDVEWGNRTPLHCAAEGGNPRCVKLLLESGANPYARMTGGWTPAHCAAEAGRSEILQMLTDYRTPIDIQDDYGDSPRNIAEIYGQRECEEILKRAEEHPVRNYSFKSKRLWGTVQSFTEEIQENVRKTAIEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FP21</accession>
    <name>A0A6S7FP21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058252</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000187">
        <property type="protein sequence ID" value="CAB3979327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FP21"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="365" mass="41053" checksum="5DA1F688BD832064" modified="2020-12-02" version="1">MGRTKFWLSRYNTSTIDTHVKRVHSGIVDVFRDDDPQATDAAREYRRLESTGALHTALLSKTLPLQKKTQVEKIGKHDNESHNDEKSTATSSGSNTKLQSSIENCVKSAQIGSPLNITKTDLGSLAKLVTENVCKNLTQEKTMSRDYRECAPGSKAENINQLLFLEKDIELVKEGESCLIRCKICKEFLDSSSTSCNILAGKIRGSLSKGLDLKKTLPLHEEGHNESWFRLKNRAISHLYSRENKTHVDALTWWHQTRSVRKQEKRVVENLELKRFLLAPLPNTGMPPHVYITADKSTNHWLQNQITVIVAVVEGKRKPIPLSPKPVYTNAEGTGGNATELAEKIYEDIEEHTGISKDSEQLLQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQF6</accession>
    <name>A0A6S7FQF6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">GPN-loop GTPase</fullName>
            <ecNumber evidence="7">3.6.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A045453</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Binds to RNA polymerase II.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the GPN-loop GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.-" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020000239">
        <property type="protein sequence ID" value="CAB3979887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQF6"/>
    <dbReference type="OrthoDB" id="243313at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17870">
        <property type="entry name" value="GPN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000579">
        <property type="entry name" value="GPN-loop GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004130">
        <property type="entry name" value="Gpn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030230">
        <property type="entry name" value="Gpn1/Npa3/XAB1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21231:SF8">
        <property type="entry name" value="GPN-LOOP GTPASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21231">
        <property type="entry name" value="XPA-BINDING PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03029">
        <property type="entry name" value="ATP_bind_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="293"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="303"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="326"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3979887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="40731" checksum="134C297B73DB19AB" modified="2020-12-02" version="1">MAESSKSEDKQCTKPVCIITLGMAGSGKTTFVQRINAHLHAKKTPPYVVNLDPAVYEVPYPANIDIRDTIKYKEVMKQYNMGPNGGIMTSLNMFATRFGQVIQYIEKRASEFKHVLFDTPGQIEVFTWSASGAIITESLASSFPTVVAYVMDTARCVNPVTFMSNMLYACSIMYRTKLPFIVVLNKTDIVDHSFAKEWMTDFTAFQEALSQETTYISSLSSSLSLVLDEFYEGLRSVGVSSVTGAGIDDFFKAVEEAALEYETDYKPEYERLKREKQEAITKSKQEQLEKLQKDLGHGESVVMETSTADWQPQPSKNPEISLGANDEVEPNVDGDEIPEDPQEQQSFQRFLKREHAKSSTSKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FRJ1</accession>
    <name>A0A6S7FRJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000515">
        <property type="protein sequence ID" value="CAB3982554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FRJ1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12097" checksum="005926381FCDDB6A" modified="2020-12-02" version="1">MGKCEILERQHPAVASFLENRVREKSSNVPSKAMYENICQYVAKLEEVSTFSTNTLQKCDTEMAKCSPAGVPKKGYKDELDFLSKNIRPRLIEIDTSIKEKAQQARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FTL9</accession>
    <name>A0A6S7FTL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052613</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000301">
        <property type="protein sequence ID" value="CAB3980553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FTL9"/>
    <dbReference type="OrthoDB" id="5978521at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="17935" checksum="117280B09B2C565F" modified="2020-12-02" version="1">MNNRAGRIQNDTKMVLLVHKSDTDKQKLVNYFRRALTSKASGSLKVEDVNVANGNDNVKDSSWLDEVNNIVLLCLTSETIPSLEQIIREKRYVQDGRLNRKVFSVSFGANLNAQWPPGGIQNENNRDFAFNFENVENLTPTDFKTSDRMTVLIAAMRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXS1</accession>
    <name>A0A6S7FXS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chaperone dnaK2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023281</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000335">
        <property type="protein sequence ID" value="CAB3980902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXS1"/>
    <dbReference type="OrthoDB" id="9975311at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18316">
        <property type="entry name" value="BTB_POZ_KCTD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043136">
        <property type="entry name" value="B30.2/SPRY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499:SF136">
        <property type="entry name" value="GH08630P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="36713" checksum="EF243E913FE43439" modified="2020-12-02" version="1">MSSEDLLTKFDDLVKRFRNEFNDIIEGERAKMKAELDAYNAEKQRMKAVEVSDNDIIHLNVGGHKLTTKRSTLCQVEGSVLASMFSGRWEDSLERDQDGTIFFDFNPQYFLVILDYLRTKKIATPENPTPLPKVPEEQAKSFNTLLEYLGLSDEIVPAEKVPSEKFNQHSSNVVTLQEGGTVAAHGPNYGHSYVLGENIYQQGIVRLRLKVESLKNNEWMLVGIVKGDVVPPNNNSYKWPGSYGWGLGQHGIVWKDGSHTIDNALKNVTKQGDTVELVLDCDAAKLSLHLPTGQQFHIEIPKSQTWRLNVDLFGANDKVRIIDDNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0Z9</accession>
    <name>A0A6S7G0Z9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004541</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000433">
        <property type="protein sequence ID" value="CAB3981836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0Z9"/>
    <dbReference type="OrthoDB" id="5980337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025048">
        <property type="entry name" value="DUF3987"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13148">
        <property type="entry name" value="DUF3987"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="521" mass="58657" checksum="CF387B9C526BF970" modified="2020-12-02" version="1">MFCINWAKGFCLYTMQQRPVLKSFLSSNMSSSKLARVSKQHEKTWCDLHRRLISVPFSFEDVFTEPVYEFIKNKSIALSTSIGYMVPCLLTTTAFVTGLNGTTVSSSTDHRTTLNLYSVVVGPPTTGKSQAMKECAMDPLIAVRDNNDLGDFVLERCTTSALVKCVSDQKRGVVVSPEVYDVLNRMLKNEEENGSGEVQMLCELFSGERTSYKYATEKTRNIGENVPFAIIGCTQVPFAARLICRMDQGHGLLDRFLFWFPMCLRPSPHETEAAKGVLNRIPVKSFTDVFLEMYSLHLGKKEYSFTQAARKVIQSIETEFITELNEAITEGIPSPKSKRTDLVKRLAVSLHVFTHIISDLVEEKDLMHTEKSLLVLDYCESQKQIVIEFIGTLTSESVVPEKMQPTLEEIMIGVLMFPGPVVTKRSFKQSAGRKIRGIVDSEFLTALERLEKDGCGVIKKLRASVNARRETVVFVKLEELPGEIALVSQDEYRKKFQLPIHKAISEATKIQLQEKQLLPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2M5</accession>
    <name>A0A6S7G2M5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000561">
        <property type="protein sequence ID" value="CAB3982972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2M5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="223"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="249"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="32096" checksum="72D8B8B7DF3961AB" modified="2020-12-02" version="1">MCHYFLKDQVNSSIDESYLDEIEKEDDEDVEVVKSSMKSKKKGETIEFDVNQLRNKFKKCVGDCKKIALTIKTATGIKKIQREKGYGSWFDQLFSLVKTRDSCKPEKATEPSANNKDEKQAGNVTDDGSDDATAKKEYVPIRSKKKNKQKEQEKTLSEVVNIVKNMVDQNPMKDLVSLVKEEMKESQEHELKLYQLMFNSSASNSQAHPHNPETSQFFQHNSYYHNHGFPRSLPSGMNPTPVPRPEPFNIQQNLFADDNSYGSPSVNSSDASNYQKRHQSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8Q8</accession>
    <name>A0A6S7G8Q8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057617</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001546">
        <property type="protein sequence ID" value="CAB3989754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8Q8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="15748" checksum="B19338F7639EC55E" modified="2020-12-02" version="1" fragment="single">MGVYFMSGYDVSHAAANNQSIMGVYFMSGYDVSHAAANNQSIMGVYFMSGHVSHAAANNQSIMGVYFMSGYDVSHAAANNQSIMGMYFMSVYDVSHAAANNQSIMGVYFMSGHVSHAAANNQSIMGMYFMSGYDVSHAAANNQSIHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDL6</accession>
    <name>A0A6S7GDL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055724</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001067">
        <property type="protein sequence ID" value="CAB3986756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDL6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12123" checksum="EC7FCA3A950D9CA0" modified="2020-12-02" version="1">MRKKMTDKMTNKMISSGSEYAPSVIPPSTTSATTRKSKLFTEEESVEFQTLVKDFIQSNKPIKRDYVISQKEKNGTLKHLADRCTARQLADKVRTERNVYMRMSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GED0</accession>
    <name>A0A6S7GED0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Cysteine-rich protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A070348</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Seems to have a role in zinc absorption and may function as an intracellular zinc transport protein.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001643">
        <property type="protein sequence ID" value="CAB3990338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GED0"/>
    <dbReference type="OrthoDB" id="9976881at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09401">
        <property type="entry name" value="LIM_TLP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd21886">
        <property type="entry name" value="SARAH_RASSF2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.110.10:FF:000054">
        <property type="entry name" value="Cysteine-rich protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.110.10">
        <property type="entry name" value="Cysteine Rich Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000159">
        <property type="entry name" value="RA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033614">
        <property type="entry name" value="RASSF1-6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011524">
        <property type="entry name" value="SARAH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001781">
        <property type="entry name" value="Znf_LIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22738:SF15">
        <property type="entry name" value="LD40758P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22738">
        <property type="entry name" value="RASSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00412">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16517">
        <property type="entry name" value="Nore1-SARAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00788">
        <property type="entry name" value="RA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00132">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00314">
        <property type="entry name" value="RA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50023">
        <property type="entry name" value="LIM_DOMAIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50200">
        <property type="entry name" value="RA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50951">
        <property type="entry name" value="SARAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0007">Acetylation</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0440">LIM domain</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0488">Methylation</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="303"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="452"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="320"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00055254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00072537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3990338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="484" mass="54868" checksum="77F8992B78B4D16A" modified="2020-12-02" version="1">MAASTVSVAIESPSLLAKGLHFLNTMPSYHEHCGKPGPKSLSYIPPPEARLFKSRSAPGSPLFDRNQHFSRSAKGSASFREPRHTRASFLLRESQLKKAEKYKDEKGPKIGRSKSFTSRITSKLYSRTEQKNSLGKSWHPKCLKCEECGKVLNPGQHSEHRGIPYCNIPCYSLLFGPGGYGRGGVESHQKLGFQTTLTPDQVALRNELLPKLQHYNEHYESDKKRALQLASKEANGKLIIEGVLRVYWGLKNPVTLAPLCGKNDRAFKLFHPVSNQKLSRSETVKQLRSQSLITDEKLADRALKKAARGKPRSNSEEKLGRRHTMSHSDRKKRPAKSSLEPTRFIPPYGTSTTLRLTSKIPTPDVVKMILTKFQIADPCDKFTLFVKYENGEIRRLCNGEGPLMIRLRLGPAEDLARIYLMEDKKDTAIGREVAQYIHFATPVLQAFIVKFNEEEERELQKIKDRYREYKKHLQAIIQEISSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNV5</accession>
    <name>A0A6S7GNV5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Multidrug resistance-associated 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A022868</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002623">
        <property type="protein sequence ID" value="CAB3995224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNV5"/>
    <dbReference type="OrthoDB" id="6500128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03250">
        <property type="entry name" value="ABCC_MRP_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001726">
        <property type="entry name" value="Multidrug resistance-associated protein 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1560.10:FF:000026">
        <property type="entry name" value="Multidrug resistance-associated protein lethal(2)03659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF456">
        <property type="entry name" value="MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="90"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="215"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="241"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="325"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="358"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="644"/>
            <end position="665"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="13"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="644"/>
            <end position="654"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3995224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="844" mass="94683" checksum="1775B1415CC63682" modified="2020-12-02" version="1" fragment="single">MSFLTSHVPRSLMEQQDSSQPLNNPARIANVISRQLTQGWLNNLFKKGNKGELEDSDIYDVLPEDATQGLADELESHWNKEKMTKEKPTLFTPFAKFLGFSYLSNLIYMFLKEGFRLVQPIYIGKLVAYFTVGSNEEKWKAYLYAGIVIACALGEAIVHHPMFLGVMRAGMHLRIATSALIYRKALKMSHSSLGETTTGKIVNLITNDVQKLDQVAFFLLYLIVAPFLIGATSYLCWREMGISFLPGLVLLLLLVPFQAWIGRFFASLKLKSAAFTDQRIGIMNEVICAMRIIKMYTWEDSFNELVGKVRKQESDKIKRTSRFRALNASIFIIAIPIMSLAMFVTYVQTGNTLTSEKVFTVIGIFMSARVVMTIFVPNSIMFLKEGGVSMKRIQEFLLMDEGVVPELDETRKIRREAIVNRINASWDKDRDETLTEISFKVSPGELLMVIGPVGSGKSSLLMALLYELPLTSGEIHMSRNIAYVSQSAWVFSGTLKENVLFGQPYNREKYNKVIKACALDKDIKDLHNGDQTFIGERGVTLSGGQRARVNLARAVYYDADIYLMDDPLSAVDSIVGRHIFDQCIRGMLKSKVCILVSHQLQYLKNSDSILCLHEGKVVGYGNLEYLIQIGVDIVSLVQPEEDEDRSLVDSEDVVPDEKSEKPTRPTSLLLKQRLELQRSLSTPPHERINNKQLLDMYISRSKKKNPQRQSWHPVAIGSFTPQGSRRYPDVNDTRSMYIMPGGRDSVLMAGDSMLNLETCSNHGSNLTIHSVDLPSFSAHLLHTAFPRKRRSSSIASAASASMLDLEMGQLHGDGLLAFVAHVTSLLRPELAQKIGATLIGKLEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNV6</accession>
    <name>A0A6S7GNV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073259</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002240">
        <property type="protein sequence ID" value="CAB3993335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNV6"/>
    <dbReference type="OrthoDB" id="7759031at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="662" mass="75093" checksum="B44D895C9D9F5CEC" modified="2020-12-02" version="1">MAKVLDLPAIPPFSVSETSSSAQRWDKWTNSLDYYIRASGISDQKQKRAILLHLAGAEVQEIFETLPDTGEDYKTALEKLNAHFNSCKNIAFERHVFRQATQRAGESMDAFVTRLRTLAKTCQFDTSLDEMIRDQVIEKCASNDLLSIARSFELADRQALEIEQKFESSTHLNSIERNRDFQQPRRNSAKREDNNRQKCVCYCCGNEGHRAKDVQCPALDKTCRRCGKSGHFARVCRQKTNKPKQYRENARQLEQSDDDSSENECLFTLTAHNVHHRSDSLHMLEIEHIPVQMLIDSGASVNVLDLETYHRLKARKGVQLMPSTLPVYAYSSTTRLNILGTVSGRVKCNSAEIVAKFVVVHDQHAGCLLGRQTATQLGLLRVGPQVSSINCAVSPHSLRQRYPSVFDGVGKLTNYQQKISINTNIKPVAQPPRRIPFHVRKQVSAKLEELERLDIIEEVRGPTPWVSPLVVVPKSSGEIRVCVDMRQVNTAVIRERYPIPTVEESLQDLNGAAVFSKLDLKWGYHQIELDEQSRELTTFTTHDGLYRYKRLMFGISAAPEIYQHAIQQVLHGLPGVKNISDDIIVFGKDKSEHDRNLHGVLARLQERGLTLNSAKCMFSVSEITFLALIFLPVGFARTPSQSRLFVMPQHPRMLQRFAVFWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H212</accession>
    <name>A0A6S7H212_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Retrovirus-related Pol poly from transposon opus</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A058757</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003313">
        <property type="protein sequence ID" value="CAB3998268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="245"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="481"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1280"/>
            <end position="1324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="256"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1315"/>
            <end position="1324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3998268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1324" mass="148592" checksum="B462CDAC0F7D7D28" modified="2020-12-02" version="1">MATSRAPKQWALTKQETITSYEAWRHNLQYTLALDHNFAVFLLEDTTWLRKTSTAPLRGLENDGEDVPEASRRTAAQKLTHLELMLGQVANYCPVIARNTIVKNSTSMRTIRQAIRAHYGFQSTGAHFVDYNNIRLEPDERPEDLYQRLLSFIDDNLLTANGNIQHHGEDVSTDEELTPSLENIIVLTWLRLIHADFPTLVKQRYGTELRSQTLASLKPEISQALDALLDEIHSSNEGKVLRTALRRSSQQRDNRSASSQPSNNKGGATKCCRICKQAKRSQFQHYLNSEPEPDDHSCFKNNRVKSTTYRVSTKQFRHLKVFHNHQAVQLTLDTGAETSMIKSSIAQQIGATIQKIKQTALQADGITPLSVVGEVHLDLSRNVHTLHLDGLVVNNLDVNVLAGTPFIVTNDISIRPSKQQITIKGTDVTHYNTHLPNRKEHLVRRTQAYVLQAPPTPTVIWPGAYLEIPIPREIDPDSTLAVEPRPDCAKSHPVPHVTPKPLASSHSSCVTVDPDNILPPTTRESFRSLLEAHDDVFDPTFTGYNGAVGPFEAVVNMGPVQPPQRKGRVPQYARNKLVELQQKFDELEAQGVFKRPEDIGITVDYLNPSFLVTKPTGGHRLVTAFADVGRYSKLQTSLLPDVDTTLRTIAQWKYIIVTDLSAFYQIPLSKSSMKYCGVATPFRGIRAYTRCAMGMPGSETALEELMCRVLGDCLQDGITAKLADDLYGELTHLKLFSRIGVASYKLFRSPSFSFKDHYLPPLDYHTWMDMDRRTSIGQSTSHCHVVIVTAPDTVRGLRSFIGAYKVLGRVLPKCSRIIAPLKSAIAGQQSGERMLWTDTLREQFRSAQTNLTTWKSITLPQPSDQLWIVTDGSVTKHAGTANVPSDFASRNAAECNEPRCQICNFVALTEDSVVRSTSVQDIRGLSGLPFTTRSAWIQIQSECPELRRTHAHLKQGTRPSEKITNIKDVKRYLNVATMAKEGLLVVHRQTPLSPSNDMIIVPRTVLNGLVTALHIKLDHPSKHQLQLVMKRQFYALDMLQVIDRVCETCHTCASLRKLRENLTKHTSENPPDIVGVSFAADVLYLCSKSFWLCLFERRRYTPTAWHIHRDRSHQNSNKNPVAEKAIAELEGELNRQVPNGGPVTELGLAITVSRLNARLRREGISADELWTQRNQFTHEQLPLEDRDIIINQHKTCRRNHPYSGRSKNTKTVGKSTSQIHVGDLIYLPAEHDKTQPLNRYLVVSVDKPRCFVRKFSGNQLRALAYKVRISECHLIPSQIPKVQPSRTTDTDSEDDGQGSNSPFQATKIPPALTLPGSQLSPHAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H322</accession>
    <name>A0A6S7H322_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin repeat domain-containing 34B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003018">
        <property type="protein sequence ID" value="CAB3997076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H322"/>
    <dbReference type="OrthoDB" id="8190933at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001523">
        <property type="entry name" value="Paired_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047655">
        <property type="entry name" value="Transpos_IS630-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF033545">
        <property type="entry name" value="transpos_IS630"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46564">
        <property type="entry name" value="TRANSPOSASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46564:SF1">
        <property type="entry name" value="TRANSPOSASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13384">
        <property type="entry name" value="HTH_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00351">
        <property type="entry name" value="PAX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51057">
        <property type="entry name" value="PAIRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0563">Paired box</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="40087" checksum="8C16251A9D688032" modified="2020-12-02" version="1">MYSINKFGRNYKVGVSLSEDYRHQVIELSHNNNSYREISSRLRIQPSTVSKIIKRYRDTGQTTSLPRDHIRTESKLSYNDSLLLETIVANKGSTSLREMQEQLNEYGNCGQISLNTISRNVRCNLPSGLKYSRKRLGKCVDQRFTNENLIYTQIYLDYISTKNPAAIKFFDESGFQLPNSGHRNYGYSEVGKPCLDIRRYNSTANKTLNFLVGIDGLKYANIIDGACDTLEFLRGFSDALRTIDPQTERPVIEVGDVIVIDNCPTHHGEGERFLRETLSEIGVELLFLPVYSPDFNPVEEVFSKLKYLLKYTCQDIVFQNLEFAIWCAVGDITAADTYGYYRHTHYFNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6V8</accession>
    <name>A0A6S7H6V8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A003393</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020002002">
        <property type="protein sequence ID" value="CAB3992217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6V8"/>
    <dbReference type="OrthoDB" id="5973288at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF8">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="4">
        <location>
            <begin position="262"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="90"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="175"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="95"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3992217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="677" mass="78163" checksum="A14A4BDB5905C93B" modified="2020-12-02" version="1">MRKSSRQVVFVNTSPPEDRVQLLKPLQEINDMEDDSDEVYASGLIRRYIKRPAKLENLSLADWAAWYDSTGKPYVKPSRELDIDNYPLETNFGDINDDDNEENESEQKSKRRSKARIIRSVCFNKEVDSEKHYRELIMLFTSWRNEATNLIKKYSSYEQHYLQVKNIIEEQMKFYAICSKDMNDIQEQLHNMEDNNENYDLIAPGTQNIERQDESEGTQDLHPEFNENYDLSGDLQIPSTASTKQLILNEEQDDVYRGMVQKLNKEQKEFFYHVLYLIKTSDNPFYCFLSGGAGVGKSHLTKCLYQAALKYYNTRVGDDFHQVKILMLARTGKAAYNIKGNTIHSALSIPACQSLKNYKHLDSSRLNTLRCQLGGLKLIFLDEISMVGSTMFNVQINNRLKDIKGSKEDFGGVSMVVIGDLFQLEPVMDRYIFKNLDNSEYAVLAPNKWQDNFNMFELEEIMRQRESKVFAEILNRLREGKHTKDDILKLKERLIKENSIQDPMDVPHLFIQNQKLNEFYEKVHNAATGEKFSIKAIDSVIGANSAQLRDKILSQIPDDPRKTKQIASNLQLSVGERTEVALNIRTDDGMTNGAGNVVKKIQLNQIDKPSGIIWVQFDHSDVGEKTRHENRHLYVQGIESTWTPIKPITTQFAVGRNQTAQVVRKQFPLRDNSPFTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9E3</accession>
    <name>A0A6S7H9E3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003925">
        <property type="protein sequence ID" value="CAB4000786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9E3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17657" checksum="D147E4E6F0C385E1" modified="2020-12-02" version="1">MCESKQHKFKSPRECEKWAREERGRRIQLSLAVEKRTTGWTTYYKKKSIYGALSLLQERYPAVAVLDVEKICKADYDACVCFRDEIDILDNELKEHEDGLKRNISLTLDENGSVKKGEEETHEFYQPLTAAFEEARCLIDSKVERLDQFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBC9</accession>
    <name>A0A6S7HBC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A009210</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003825">
        <property type="protein sequence ID" value="CAB4000383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBC9"/>
    <dbReference type="OrthoDB" id="4369127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001995">
        <property type="entry name" value="Peptidase_A2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50175">
        <property type="entry name" value="ASP_PROT_RETROV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="MYND-type" evidence="7">
        <location>
            <begin position="32"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase A2" evidence="6">
        <location>
            <begin position="124"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4000383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="36165" checksum="1F6EF300458623A1" modified="2020-12-02" version="1" fragment="single">MSTESWKEYFKLQEAASPGPEVAERSLRSQRCSYCGKDDDQMTLYCCAQCKCVVYCLRNCQKRHWNDHRNNCKTLRDLTWTCQNKTRSNNKTFTSHLTPSEHAKIAKLVGRRCTVKCSLNEFEATVLWDTGAQVSIVSKEMMEKHFPKNVIKNISELINGELDLTAANGTRIAYSGWTEIEVRLISSKEKDPSVMVPFLVTNDSLEYPILGYNVIEELIKPMNTSDIQSAHIATVQASFQGFDEKVLLELVRLIQTARANELCTIKSPKKDFVIPAKKTFKVNCRANTGPVEETTLVLFEPDELTPWPDGLSVHETVTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFV6</accession>
    <name>A0A6S7HFV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002426">
        <property type="protein sequence ID" value="CAB3994247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFV6"/>
    <dbReference type="OrthoDB" id="5871067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="15436" checksum="527705B09697D3E9" modified="2020-12-02" version="1" fragment="single">DKYRSEDTDATCYDGTFKHPLTGNARRYVLGDRFHNAANPQKSPLCDYHDINLLRQPNMIKTRYQECENNRKNTRRPRSSCIQEFGTHFFYNYLMDYFQNEDIVKRQRQLVSANLKPNQELKRDNVLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGQ2</accession>
    <name>A0A6S7HGQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005103">
        <property type="protein sequence ID" value="CAB4005135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGQ2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="15652" checksum="FEDD21F2FA20BA7B" modified="2020-12-02" version="1">MGPGLGPVLGPVLGAVLGPVLGPVLGPVLGPVLGPVLAPGLGPVLGPGFGPGLGPGFGPGLGTGLGMGLGMGLGTGLGTGLGTGLGTGLGTGLGTGLDTGLDTGLGTGLGTGLGTGLGTGLGTGLGTRLGPGLGTGLGLGPGLGLGLGLGLGLGPGLGPGLGPGGPEGSEVAEAPDMIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIV9</accession>
    <name>A0A6S7HIV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054119</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004536">
        <property type="protein sequence ID" value="CAB4003090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIV9"/>
    <dbReference type="OrthoDB" id="5034579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="20052" checksum="05F596AC80CC1CF1" modified="2020-12-02" version="1" fragment="single">MDFSKAFDSVKHSLLSEKLKTVPLNPYIINWYLNFLKNRKQRVVCNDFCGEWMDVNKGTTQGSVSGPYLFNIFLNDLEVDIDGENALFKYADDSNIIVPVWSEGPDTSTDTVGQFLSWSDDNFMTCNPGKCKELIIRKKGYNDQLDNVYNIPQCKELPILGTTFQDNLKFTSHVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HN01</accession>
    <name>A0A6S7HN01_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021021</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005169">
        <property type="protein sequence ID" value="CAB4005347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HN01"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18634" checksum="6F9457CFE70DB54B" modified="2020-12-02" version="1">MGKKHCFSDEKRFTDFVLLRCFTDFQTTLVDSRKNSTGLSSLLAGDVSPPAKNDARGLFKSYRDRSTSAQEAGLRSTKTQETHADPISSGRFSRPQANIESNQSNRHSMTSFPPSTAGVKMREKPTTRSNVPSWYREFQKGKEVSEKEITEDQNNPRSYQGWWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HSS4</accession>
    <name>A0A6S7HSS4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Deoxyhypusine synthase</fullName>
            <ecNumber evidence="4">2.5.1.46</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A025836</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a critical lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue. This is the first step of the post-translational modification of that lysine into an unusual amino acid residue named hypusine. Hypusination is unique to mature eIF-5A factor and is essential for its function.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[eIF5A protein]-L-lysine + spermidine = [eIF5A protein]-deoxyhypusine + propane-1,3-diamine</text>
            <dbReference type="Rhea" id="RHEA:33299"/>
            <dbReference type="Rhea" id="RHEA-COMP:10143"/>
            <dbReference type="Rhea" id="RHEA-COMP:10144"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57484"/>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
            <dbReference type="ChEBI" id="CHEBI:82657"/>
            <dbReference type="EC" id="2.5.1.46"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; eIF5A hypusination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the deoxyhypusine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.46" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020003323">
        <property type="protein sequence ID" value="CAB3998320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HSS4"/>
    <dbReference type="OrthoDB" id="294378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034038">
        <property type="term" value="F:deoxyhypusine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.910.10:FF:000010">
        <property type="entry name" value="Deoxyhypusine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.910.10">
        <property type="entry name" value="Deoxyhypusine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002773">
        <property type="entry name" value="Deoxyhypusine_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036982">
        <property type="entry name" value="Deoxyhypusine_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11703">
        <property type="entry name" value="DEOXYHYPUSINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11703:SF0">
        <property type="entry name" value="DEOXYHYPUSINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01916">
        <property type="entry name" value="DS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0386">Hypusine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00056884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3998320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="11769" checksum="48920DF6861A1758" modified="2020-12-02" version="1">MNSQVVFATNSGIIIIGGGLCKHHICNANMMRNGADFSVFLNTAQEFDGSDSGARPDEAVSWGKIKPTATPVKVYAEATLVFPLLVAETFVKNYDNKKKDLETRSCKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYT6</accession>
    <name>A0A6S7HYT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A024404</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006404">
        <property type="protein sequence ID" value="CAB4009293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYT6"/>
    <dbReference type="OrthoDB" id="5972980at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4009293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="399" mass="45411" checksum="DA48D55D7C932E8B" modified="2020-12-02" version="1" fragment="single">MPGANCVFPNCGTNRREKYDGVGIFRISQRKSPLYSAWREEVISIIKKYRVVDETFKRQIEAWNISICERHYKQDDIEFTSKGRKALVVAKANAPVSTTHPHRLKLALQQQRLKCTQLEGELTKMRQAIQKSGVVLQSEFSQDVRSLMSGNKEKLTPFMKLFWQQQQEAFTKSPNAIRYHPMIIRFCLSLAAKSASAYEELRNSKVLTLPSRRTLRDYRNVITPSIGFNPALVQELCQTTKSLTGIQRFVVLAFDEMKVQSKLVFNKNTGDLVGFLDLGDPDINFTAFDDAEELASHALVFYIWGIASDLKFNLAYFATGSLKSYQLMPLFWKAVAILELTCSLPVIVAASDGASANRKFYRMHAAMDKNAGKSVVYRTVNVLMKYHRTKVNCTVSEFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I118</accession>
    <name>A0A6S7I118_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A084771</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003849">
        <property type="protein sequence ID" value="CAB4000491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I118"/>
    <dbReference type="OrthoDB" id="10072345at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="288"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="132"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="299"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="326"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4000491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="538" mass="60504" checksum="CFC7253B2A7B6806" modified="2020-12-02" version="1">MASSSTATSSWQDAFNLDLLSDKDIEKYLFSNNKGNLKWYGDFVLLQELFDHLLQHQLIWSKPGSYCRKLEGDGFTIRWYSDNGTLTVSEAKEEKIKRYLQHISTKEPDSIIDICRIKEADNFKSPLSRDQVKHITEENIALKAENAALKEKVDYAVLVMSDLNTKLKLLEEEKQSLITALNILQVNEFKSNTQNPGQYVLANIQNEKSQPEQLEISSDSEYNIPLANRYSTLADEGKLNEDESEQTTQQQGQASVITMELNVQQQQQQSTCNQSSEQCNSDVRVDNQQGQLREPASNEPPNNGNSKGTKQAEMAKTKGRIRPVDSRNSVNQGTSKSNSDNEMGSQGKSTLVIGDSMIKEIEVNKLSRSKKITKICMPGAKSDQIKERLQTTLKSTHYDEVIIHAGVNDLSNSQPDQIIVQLTDMAASVNSSTKVSISSIITTRDKDRNSAINLINSELKITCQSRGWVYIDNSRIGNEHLKFNSIHLNRVGVKLFASNIIRQSLRPGSNRRSMTKPENFPNTVWRLAKALNMIAQIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IF51</accession>
    <name>A0A6S7IF51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Toll-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A026290</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Toll-like receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005010">
        <property type="protein sequence ID" value="CAB4004821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IF51"/>
    <dbReference type="OrthoDB" id="5983987at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10140:FF:000026">
        <property type="entry name" value="Toll-like receptor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000483">
        <property type="entry name" value="Cys-rich_flank_reg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026906">
        <property type="entry name" value="LRR_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000372">
        <property type="entry name" value="LRRNT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24365:SF541">
        <property type="entry name" value="PROTEIN TOLL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24365">
        <property type="entry name" value="TOLL-LIKE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13306">
        <property type="entry name" value="LRR_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01537">
        <property type="entry name" value="INTRLKN1R1F"/>
    </dbReference>
    <dbReference type="SMART" id="SM00364">
        <property type="entry name" value="LRR_BAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00082">
        <property type="entry name" value="LRRCT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00013">
        <property type="entry name" value="LRRNT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4004821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="925" mass="106796" checksum="3923BEE1A64FF097" modified="2020-12-02" version="1">MFFLVVSSEDPREECSLNLNVGDILKRSVQKSEQSSVAVHQIGCVCHSPARMSFCRAENFTANDVILYLTIFRHCRVTGADLAVWGRAADLRVLYLMDDVILQDNGETKDDLQGLFNIGTLTLRNLKNKTIPRMFLSYIWEKMAEIQLSKIRLGSTVNILKTTMPYLQSLELSGNDLRALPDFPWCNRSLKLPRKLSRTFTMNAYYSQGATINPHVYRRFYAVHFNPGIRDFKIPSGSLDKISIRGDNLKSIDSTMFHGVTGLKVIDLSLNKLSHIPERIFEKTPDVVSVNFANNNLTWLDGKTFENLTNLRKLDAGHNYIHTIQNGFLSDKLVNLEAIEFENNLLRVIEARAFPRSVLNALKKINLRKNKLREVPQFGFYVRNLKTYDISENGIDFAGFVRTVDRIFMPDFLYVHTNSGSSIDTPINFRNEKILNLERNAIERFDLTEFNKTRLITLEFILKVFTISLTGNPLHCDCKTRELQIKLLNWTKGNTEITEKDFESWVCHTPPELRGMKILNVPSKDLRCERRCGKCPKRCTCYRSDSDSVTLVDCRRRNLTMLPSILPNGMVELRLEYNQIENLTFSKNTENVTSLYASHNKLQRVSLTLKHFPSKLNEIYLDSNKLTTLPNGFRNFTLSRINLQNNFFTCGCENRWMKSWLKQQSKAFVGGAESVACSSGGMNQAKPLVSVKDTDFVCTETVKPNGYNVNEIKAISAYVLAGFLFTLLVMVALIYRFRKELKLVLYTRFDWHPFDRVDDSDPSKVYDAFVSFNMCDKRWVMETLQNKLENHHPSYKLCIHYRDFIPGAPIAETILESVKKSRRMIMVLSRNFIQSEWCMLEFRAAHRRVLKGRTNYLIIVLFDDVNVDSLDDELKLYLKTNTYLSVQSKWFWQQLKYALPQKKQETSDGFLGNQALDSDEKYIQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGX6</accession>
    <name>A0A6S7IGX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009939">
        <property type="protein sequence ID" value="CAB4018285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGX6"/>
    <dbReference type="OrthoDB" id="10178120at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="68" mass="8399" checksum="3D9B604E6BBFDF4B" modified="2020-12-02" version="1">MPTLEELDRRMCVVIWLQQRERKNEKTDKARYQQWVKVVFKEATQKKEHTRDDIVDQHVEQNKKAKLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHG9</accession>
    <name>A0A6S7IHG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009993">
        <property type="protein sequence ID" value="CAB4018414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHG9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="10973" checksum="612D8C1F2C42AB46" modified="2020-12-02" version="1">MEVISAMAFIVMSFSLIQPIVVPDAIMVEAAQDLEHAAAEVVGLEPNVNQLIVVPDAKMVEAAPHLKNVAVRVVGQETDVNMNQANLLKIVQKNINSGTIAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJD9</accession>
    <name>A0A6S7IJD9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009183">
        <property type="protein sequence ID" value="CAB4016600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJD9"/>
    <dbReference type="OrthoDB" id="5988694at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006758">
        <property type="entry name" value="A32L"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04665">
        <property type="entry name" value="Pox_A32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19879" checksum="AD661157C6BFE1FB" modified="2020-12-02" version="1">MIETAYNKVFDSIVVVCPTIEWNTTYNNWSQLNDHGVIKIPCSQEMINHVLSVTSVIFKGTNTLIVVDDCPSSQAVKQRVSELVRPAFSARHYNLSVIVLTQQLSSVSKPFRENISRPVTFYNPSKKDIKVITDDYLNGVPHDLISDITRVLRREKYTTLDILLIDSYGFTLSKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IK66</accession>
    <name>A0A6S7IK66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">OCIA domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A031397</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010447">
        <property type="protein sequence ID" value="CAB4019424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IK66"/>
    <dbReference type="OrthoDB" id="6513616at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040187">
        <property type="entry name" value="OCAD1/2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009764">
        <property type="entry name" value="OCIA_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13336:SF3">
        <property type="entry name" value="OCIA DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13336">
        <property type="entry name" value="OVARIAN CARCINOMA IMMUNOREACTIVE ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07051">
        <property type="entry name" value="OCIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="66"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17678" checksum="7A5868D4C1032F7C" modified="2020-12-02" version="1">MDADGRRRTNRNVEHLELTEEERKVLRECRINSMIRGVPAGILSAILTSFAVRSGRFPHLTYWSRFYYGVSFTGGLLFGVASYRKSCLEKIMQLENSVLADQVREYYRRSGIEFVSPQGKRKDTEFDESGATAYNSTDDHEVELSKENVPNLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQB1</accession>
    <name>A0A6S7IQB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A060874</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005942">
        <property type="protein sequence ID" value="CAB4007872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQB1"/>
    <dbReference type="OrthoDB" id="823504at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09823">
        <property type="entry name" value="peroxinectin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.640.10">
        <property type="entry name" value="Haem peroxidase domain superfamily, animal type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.130">
        <property type="entry name" value="Integrin alpha, N-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006624">
        <property type="entry name" value="Beta-propeller_rpt_TECPR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013517">
        <property type="entry name" value="FG-GAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019791">
        <property type="entry name" value="Haem_peroxidase_animal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037120">
        <property type="entry name" value="Haem_peroxidase_sf_animal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028994">
        <property type="entry name" value="Integrin_alpha_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11475:SF4">
        <property type="entry name" value="CHORION PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11475">
        <property type="entry name" value="OXIDASE/PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03098">
        <property type="entry name" value="An_peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13517">
        <property type="entry name" value="FG-GAP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19193">
        <property type="entry name" value="Tectonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00457">
        <property type="entry name" value="ANPEROXIDASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00706">
        <property type="entry name" value="TECPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69318">
        <property type="entry name" value="Integrin alpha N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50292">
        <property type="entry name" value="PEROXIDASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4007872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1029" mass="114850" checksum="EB078050E09C2142" modified="2020-12-02" version="1">MKQIDTGITSKVWAVDNNGETFSLGSDQKWKKMNFRLTHVSAGGSGVWGVDTNNNVFRRVGGGNWKRIPGLKLKQIDSGPQGIVLGVTKSNQVYCRSGNKWKIINRRLKYISCGSTLGSTGCWGISPGNRVYYREEVTRKNCAGTSWVTIDGRMKQIEVGGNGDVYAVDSDGKLYVREGVSSSNLYGSGWKFLRGASSVTTGWSGQYLLDNGIVYRLSGDEGLLRTSEGDLLPLDTSCKASACIQACFLAGDMRANDQQGLTAFHTLFMREHNRIAKILRNLNRHWDGEKIFQETRKIIGAIIQKIVYVDYLPILLGPGALPRYSGHLDNVNPGIINAFTLAYRLGHSMIRSKFDLLNPNFDPIAPAVNLRFLFFNSSNINTYGIEPLLFGLAGNVSEKVDTHLTTEITEHLFERGNSHGENLAALNIQRTRDHGLPGYNEYRKLCKLGDAKTFEDTSSEIQDRENRRILKELYNNDPGLVELWVAGIAETPLPGAVVGPTLRCVVGEQFKRARDGDRYFYENEGIFTPRQVQEIRKTSLSRLYCDNLKDIVSIQRNAFKSSIKQPRPSCGEIAGLSLCAWKECLTGEPHFNPNTRKCVCRCSEKTKDCPNKWTDASGYSALPFSIYSERGRGYKPSRFVDLNGDGLLDFVYHILTPKKSFKGAYLNDPTLKKFVHKPEFDPPVALATEKSSDLGVRFVDLNGDEKADLVYGRLTNKDERVKGAYINTGSGWKLSPEYIPPRLIVSDDDGDLGVRFVELNGDGMVDFVFYRYISEKNQPKGAFINTGNGWKAAPQFTPPYPIASDYDHDNDYDYDYDYEDQSVRFVDLNGDGRMDIVYRQWISSDRVEKGAYINDGHTWVWSPQFIPPIHTDNKGAKFVDLNADGKVDLVYHTRISSKKSRKGAYMNNGYRWIWKSQYTPPFPIADEKNGDYGARFADVNGDGLPDMVWNRPGDKGGAINTGCEWKLDDAFSPPYSIASSKGKDLGARFVDLDGDGAVDMIRSLEQKNKSKKKGAKLACVSAGNGNVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQF9</accession>
    <name>A0A6S7IQF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015669</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011448">
        <property type="protein sequence ID" value="CAB4021465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQF9"/>
    <dbReference type="OrthoDB" id="10056446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="252"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="256"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="266"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="32829" checksum="D4A086057EB283F6" modified="2020-12-02" version="1">MNHLTVTKGKIPTNPPLNQPSPPNIDKSNTPMMQKPLFCDSNGRYINPSLLCLKMCDTVSNKVIIEKTTSSPKTFMLHCGTNDLEKTQSNDELINQTMEIVENIEKSYPQSRIILSTLLSWGDDLDKRVATINKELENTLSAKKNVKIVMHENLEKSKHLKDKKHLNEKGVKLFAQSLKQAYFNKLPRTWNFPQNQQYRTQYTQSRFYQPNPYTHYPILNNRQQKHIPQQQATEPPPPLMAFNPYDPYHLSMPYHQHSNISSQPKMNERMSKQDNPKIPSELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQY4</accession>
    <name>A0A6S7IQY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011556">
        <property type="protein sequence ID" value="CAB4021665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQY4"/>
    <dbReference type="OrthoDB" id="5984802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="397" mass="45159" checksum="F99051C18C2C7D65" modified="2020-12-02" version="1" fragment="single">MAEASAPLDLSTYQDDPCCPLPTGRPGSKGSLSWHEKFDWLEYSVSLDKAFCFVCRVCNAQVSLRSEPTFIKTGFSNWKKVENLSKHEKSDCHKHSLQAYRHWKSQKPVDHQMSEEAERQESYRQQNVKKNRTIIGKIIDLVRLCSKEFLAHVAKSDSIIHNHLSSSADNARYTSPEIQNQMIEIVGSSIVNEIIRRVKEAELYAIMADETPDNSKTEQLSLLIRYVWNGTVEERLIAVEPMEETAAEALFNTVQRKLQQCGIEVANMRVQCYDGASNVSGIHTGLQARIKELSPSALYTHCYAHVLNLVIVDTMTNNTVAKDFFGTLQNLYVFIESCPKRHAVYLKHQREFNAAVEGTNKREYVLKKLSDTRWACRADSITAIYNTFEAVIATLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVB7</accession>
    <name>A0A6S7IVB7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">39S ribosomal L41, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A018168</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mitochondrion-specific ribosomal protein mL41 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005281">
        <property type="protein sequence ID" value="CAB4005698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVB7"/>
    <dbReference type="OrthoDB" id="5965148at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005762">
        <property type="term" value="C:mitochondrial large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019189">
        <property type="entry name" value="Ribosomal_mL41"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21338:SF0">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN ML41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21338">
        <property type="entry name" value="MITOCHONDRIAL RIBOSOMAL PROTEIN L41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09809">
        <property type="entry name" value="MRP-L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0809">Transit peptide</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4005698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="69" mass="7888" checksum="C56802084711ED3F" modified="2020-12-02" version="1">MNTLETSAGHYIIVPKKVPEFVVPDLTDFELMPYVSYHSPKVVCPPVNENSLLQEITDNLQNIRFKETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWH1</accession>
    <name>A0A6S7IWH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Succinate-- ligase [ADP-forming] subunit beta, mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A007739</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006586">
        <property type="protein sequence ID" value="CAB4009831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWH1"/>
    <dbReference type="OrthoDB" id="1552at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042709">
        <property type="term" value="C:succinate-CoA ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006104">
        <property type="term" value="P:succinyl-CoA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.261:FF:000001">
        <property type="entry name" value="Succinate--CoA ligase [ADP-forming] subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="entry name" value="Succinyl-CoA synthetase domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017866">
        <property type="entry name" value="Succ-CoA_synthase_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="SUCC_ACL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815:SF1">
        <property type="entry name" value="SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT BETA, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815">
        <property type="entry name" value="SUCCINYL-COA SYNTHETASE BETA CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="Succinyl-CoA synthetase domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01217">
        <property type="entry name" value="SUCCINYL_COA_LIG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="ATP-citrate synthase/succinyl-CoA ligase C-terminal" evidence="4">
        <location>
            <begin position="176"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4009831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="35014" checksum="583514075CF0BE59" modified="2020-12-02" version="1" fragment="single">KRQCNTLKLIAPRLHSLEIDLPRFNLNTPNIIYIGVHLTLTLSNSPSHLLTAHPPKISGTTPVKIMKIRLCIPSIIEHEVAGLLRYPSVATVSETKNIYHLREISNRHMTNFTDIYLFSCHRFVCMDAKLNFDDNAAFRQDDLFQQRDWTQEDEREVEAAAYNLNYIGLDGSIGCLVNGAGLAMATMDIIKLHGAEPANFLDVGGGATAKQVAEAFKLISADSNVHAILVNIFGGIMRCDVIAEGIVAAASQLDLDIPIVVRLQGTRVEDAKAIFTTSDLRILAVDNLEEAAKMAARLSNIVELAKQVSVDVKFELPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWS1</accession>
    <name>A0A6S7IWS1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Metalloendopeptidase</fullName>
            <ecNumber evidence="13">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A048988</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Metalloprotease.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12 13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12 13">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="13"/>
    <dbReference type="EMBL" id="CACRXK020005421">
        <property type="protein sequence ID" value="CAB4006138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWS1"/>
    <dbReference type="OrthoDB" id="291007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04280">
        <property type="entry name" value="ZnMc_astacin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.390.10:FF:000015">
        <property type="entry name" value="Meprin A subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034035">
        <property type="entry name" value="Astacin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001506">
        <property type="entry name" value="Peptidase_M12A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003582">
        <property type="entry name" value="ShKT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10127">
        <property type="entry name" value="DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10127:SF901">
        <property type="entry name" value="METALLOENDOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01400">
        <property type="entry name" value="Astacin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00480">
        <property type="entry name" value="ASTACIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51864">
        <property type="entry name" value="ASTACIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51670">
        <property type="entry name" value="SHKT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5 12 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 12 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 12 13" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2 12 13" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="6 12 13" id="KW-0862">Zinc</keyword>
    <keyword evidence="8" id="KW-0865">Zymogen</keyword>
    <feature type="active site" evidence="12">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU361183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4006138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="274" mass="31815" checksum="0AC4CAFF67B6A373" modified="2020-12-02" version="1">MTFFTGLIEGDIVNDEQFKILTGRIANPRGRRDTLSDRNFHWENAVVPYEIANDMSIRGRKVIRRAFREIAKRSCVSFMPRQAYHNDYISFISGKGCYSSIGRVGGRQVVSLHDDCKYRGKVIHEILHALGFFHEHSRSDRNQYIKVIWKNIKKGMRRNFVSYRHGPIDTLDEPYDFLSIMHYDNKAFTKNGRDTLQSLTNPKMKLGQIKRLTKTDVNQINKLYHCNGHNEGRTIVKCADFKNNCKLRTSKTNVCEVKYKLMKENCAKSCAFCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J681</accession>
    <name>A0A6S7J681_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013631">
        <property type="protein sequence ID" value="CAB4025484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J681"/>
    <dbReference type="OrthoDB" id="5989726at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="282"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="322"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="37713" checksum="82941532A0E098DB" modified="2020-12-02" version="1">MADDKVNEAQGKSNFSDKDEERLLAEEGEQTQDYVTTGDTNNDSTRMWEAIKGLGKKLDLLAGTPNTRITDAPLKRKIPHTVTKESKNDAETPPGLSRQKKRKSSSVCDDASDDSDRDVTALLDKEDEQDGDESDKLLQELEEEYNSEDKTVPLVNPELWGKLGPPVKTQDLRIANVQQTIVKATVALTEATERITKVKGNIDGKQQIITSLTDSLALLGHATYDLSLRRRDIMRPSINRELRALCSPQIPVTEFLFGDDVQNSLKTIIECNKIASSTVKQGSDYKHKPTYSRGGNYKPQASQGYGHGSKPFLGQRKGYQPFKKKVWTPHHKREDMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J6P5</accession>
    <name>A0A6S7J6P5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003848</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013715">
        <property type="protein sequence ID" value="CAB4025634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J6P5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="191"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="203"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="29376" checksum="F9EAC26C16CD08CB" modified="2020-12-02" version="1">MLPQQSDTGVQSAEVSVITGTGDRSEVSNLTTENNDYRAEIPVAKIDIISPIDNSSLVELENFIDDSFCNIMNSRHSEVTKGTVEQVFVNSTPFKQRESDNATTKNALFDNFKEKVEYEISNLLAKLTKQDETININKQDICKLREENLHLKSRISKLEEKMASASIEKFPGAIEISSVTPTTQYVPISTKKKANEDRIPESNVPNMQSNPENRGFCLKDDRCDFSHAWVPTRRSVLKTTTSSHLPPASFLSRAQVPLPPTVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JD71</accession>
    <name>A0A6S7JD71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">60S ribosomal L26</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A058084</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015363">
        <property type="protein sequence ID" value="CAB4028271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JD71"/>
    <dbReference type="OrthoDB" id="1688503at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06089">
        <property type="entry name" value="KOW_RPL26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.30:FF:000009">
        <property type="entry name" value="60S ribosomal protein L26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_uL2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005756">
        <property type="entry name" value="Ribosomal_uL24_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041988">
        <property type="entry name" value="Ribosomal_uL24_KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01080">
        <property type="entry name" value="rplX_A_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11143">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00467">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16906">
        <property type="entry name" value="Ribosomal_L26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="KOW" evidence="5">
        <location>
            <begin position="91"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="165"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="165"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4028271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="22172" checksum="6C134423314F663C" modified="2020-12-02" version="1">MPPEHQNELQRWENETQSWLHPRKVLWDSPLLYRPPSWKGCIKMKYNKNVSSSRRKSRKAHFTAPSSVRRKLMSAPLCKDLRQKYNVRSLPIRKDDEVQVTRGHHKGQQVGKVIQTYRKKWVIHIERIQRDKANGATVSVGIHPSKVEIVKLKLDKDRKAILERKDRKRLTEKGKGKHTEEDVAMATAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JDP8</accession>
    <name>A0A6S7JDP8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015496">
        <property type="protein sequence ID" value="CAB4028451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JDP8"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="133"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="174"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21199" checksum="65EBA67E890F163F" modified="2020-12-02" version="1" fragment="single">MGECADDILKTLQIDEDKASYEEVKSALENHFSDRRNVLVERARFNRRVQRTGEPVDTFIQDLYKIAADCEYGTLRNELIRIIVGVVDDSLSDRLQSKPKLALQEAVQIAHQAEERKHNRDVVRGDATKSSDVYYVRNGAQTKGRYHKQNPRPQETKGPHTPLKKSGDKCNWCGHEKHDRKVCPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJE8</accession>
    <name>A0A6S7JJE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017206">
        <property type="protein sequence ID" value="CAB4030881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJE8"/>
    <dbReference type="OrthoDB" id="10035704at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF3">
        <property type="entry name" value="MYCBP-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="849"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="849" mass="96516" checksum="A54F6D738F15D861" modified="2020-12-02" version="1" fragment="single">KSGDLCKLTPHTIAKISEYCKKWIDLDGEQSTIAANIAELIKRWSFHSETELVRDEIDTEIANLRYHKECYVRFCDKTKIERAEKRIIKKKAMTVDASTKGEPSTPFANRPAPVHVRISPRTLISGSEGITRRNRHVLPEQCIICKRQETYKVDKARLQRDYPQLVFHRPIVRNRSELVFVEELSVGEVAETCGTADTEGADSEESDSDEEMISETPIDKKEVTLKEYYDVAMALQNAIKGARAMDSSWPPSSVDLSTTQVLKMVPIVLFNFIAWILGFSDYPEMSSHLKLEDSHMTKVLSICQDMLYIASNGRKQTPKSLALGMAVRQLTRSSQLTQILNGFGHCASHSAILTYETDLAKLAIKSDCCIPKDTEKHKFTCLVYDNDDFTEDSRNQTHILGGILIQREDLSGNGPVVVTQQLKKGGRTLQAPSESIIPYSLGKKQTPNFLGTSLSSTFYEINVSFHQDLAKRLDFAYFLMKMRQNHVGTVLPGWTGFNILLRQSAIPPLSRIRYLPIIDGSPSDYSTLYTALLKSINIADTLSLEHIVLVFDEAIYAKIQQIRWKDEIFMKRFVVRLGEFHATMSFLSAIGNMFRDAGLQDILIESDVVGQGQIKGVMTGKHYNRSMHCHKVMSEALHRLRFQAFLDSVSDEESANIYSVVSDLLNNFPSEDFEEKLTAEPFSEILDKYEDFVVQESECNPTFSLWSTYLEMIGILLQFVRATREGNWELHLSTMRSMLTWYFGCDRVNYCRYGTAYWLEMTRLQETHPTLLRDLRDQWTVQRQQNHGFSSVACDMTIEQTLNRDSKTKGGMVGITLNRGAMQRWIIAQSDRSAITGECMKMAGTDPTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLS7</accession>
    <name>A0A6S7JLS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083396</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018244">
        <property type="protein sequence ID" value="CAB4032237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLS7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="95" mass="10974" checksum="B8FE575EDF4904E1" modified="2020-12-02" version="1" fragment="single">QYKSLRTKKQDHAYSESPDWVGSIPSKFQFPLRNISPTVLNKPSIENFTQIFTLLEKENAFSNQWNLIKHSQPFLMLCNFSTSDEIAPAAKRTLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRL7</accession>
    <name>A0A6S7JRL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044433</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007787">
        <property type="protein sequence ID" value="CAB4013168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRL7"/>
    <dbReference type="OrthoDB" id="1668230at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032735">
        <property type="entry name" value="BROMI_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055391">
        <property type="entry name" value="BROMI_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14961">
        <property type="entry name" value="BROMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23431">
        <property type="entry name" value="BROMI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BROMI N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="BROMI middle region" evidence="1">
        <location>
            <begin position="118"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="37338" checksum="68107C75A731B5D2" modified="2020-12-02" version="1" fragment="single">YEFVRQIRSHINTVLLPVVADEIEKRAVSGVDCHNAIPLIIEELLASQEYATLSQSILENIKSTVNEMIQSFDESSKQQTWTDGYSEYCGKYFSVDAIEEESSLSSSGKMSYMFMPHEKIRNIVQKLDMSQSIETRYQALVMLSQIPPSDVVTSEHWGTLKKSLSLALGDEDDRISDISLKLVSKIHIINNGHATCEVFTCLTHHLMHIFQENEHAQAQLDDGLNVANKNNQRIVKKFRLLCEFLHEIPSYWVRYPERFVEDILESSLALLSLGNSHFGLSSFNAIISPLHYLAILDPKASWFKKWMHGYYSRKSVVEQLKRHPSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JT69</accession>
    <name>A0A6S7JT69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027832</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021595">
        <property type="protein sequence ID" value="CAB4035996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JT69"/>
    <dbReference type="OrthoDB" id="6149650at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF1">
        <property type="entry name" value="TELOMERE LENGTH REGULATION PROTEIN TEL2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="859" mass="95880" checksum="14A8595061FFF554" modified="2020-12-02" version="1">MQHQVGTTEKKARKVGRPKDANQEQAFIRMCSFFEENDEEQLTVSDLADRMGEYLVEQDSVAYGNQYLKSKLLKHYGESIFIAEGNGLHDIVTFREKTSILRDYFSKPETVEGARKSAIIETAAKLIKSDIKSMIPLSTDQYPKASDVELNSALEYVPPSLHCLLKNLLVGKDIRRKEASIGQCIIQAVTISSRYLAAMGFSSSYSEVQRFEENAAASVAPDVLGGDIHALDAALLFAADNVDHNIITLDGKGTFHGMGMIAAITPERQTSHTVLRQKIAQLKIVELAQVDIKEYRFAKYARNNIKFDPMPYFDGDAHKIDILWAMSFRFKKSAPGWQGMMHLLHKDCDHPGQSSVVFLPIIDMYPGDKSCIFSTLEYLCNLAIGHKTTAVVTFDQPLYWKASEIKHEVPGDSQIRSVVLLLGSFHTLMNLLGAIGTLMDGSGIKEILGTIYGENAVQHIMTGKAVQRALRGHLLLDQCLTQQVVDKVMSDRPDFANLLQKLEELYEQEVPGHSHLDSLISSSCLSEIAQILSSKEGELSAHSATAKLWLVYQQMIRTARELIKADRTGSWLMHLHAISECLPIFAAAGHSNYLKSAYLYLQSMTRLEKGNLSVFRKFMNGLHVIRQSDQYWAGLGCDLVIEQALMRSLKIAGGLTRGSGMSEHQRVLWTMSAPVCSAYSDKMQSFTDQSLVTSEQHKRSDCVKEEASLRNIITGVNANEDVNVHNLFAIGKETLATMEEQPVFSFAYKRKLKARTLASARAVKVAEDRTIDPALLFQRFLVVCQTEDLSLEEVLSYELSPYPPSLFEAKNLLRKADKAQLLDGLKNYVASCSDEAVLHYIPEVEHNVLDGGSLLHRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0N5</accession>
    <name>A0A6S7K0N5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058947</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022616">
        <property type="protein sequence ID" value="CAB4036988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0N5"/>
    <dbReference type="OrthoDB" id="5990311at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="507" mass="56507" checksum="A9CB1617E5F1C82E" modified="2020-12-02" version="1">MVKYLVFTEAQRQQHKTTFVFYIFVFYIFVLNIFAAEDSCDSHVDCVDLSSVGYCCRDYSRNSSRSCTNISSCLDRFCRSNNECVYSSDECCLSNKCIKCSFCKENYDCGSRSHQYCCKTNLYGHGGRCDFTCIGKPCSNLLSCGAPGECCRSGECAKCSDPGCRFNSECTSGQYCCRQGEYYFKQRHCNSSCIGESCNYHSDCGGKRECCQSNKCVKCPYTVCKYNGDCSIGQYCCGRDLYSLNLKGICNESCLGKFCSSSRDCGSPGVCCHSGICTEYGCHCSSNYHCSNGHYCCTGTWYGQCRSSCVGETCMVNHDCGGSSKEWCRRGVCARGQCDSHFHCDKLEFSCCKKQFSNESSECKEHCINESCSSDNDCARSNECCGANHKCTLDCEKSFPVWIILVTTIVVFLFGIVAFFIMYCRNKPIMHQRTQQLPSQGCVEMVPADSANTTVHNNAVPNIPPPYSANDETFVLVQNIPPPPYATNDETILSELEQDLPPNYQLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K662</accession>
    <name>A0A6S7K662_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024564</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012642">
        <property type="protein sequence ID" value="CAB4023723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K662"/>
    <dbReference type="OrthoDB" id="10652685at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23665" checksum="98B37AEFA07F505F" modified="2020-12-02" version="1">MTVPVVMLHKNGPHGVTALRKTGTHYDKRRAYTEQKMAILWSWTQNNERYRLQQETNGHMEQLTDNGNIVVLDTEGPTQNNERYRLRQETNGHRGRPTENGNIVVLDTEGATQNNERYRDVEARSRHQDLSHPSAHRPRDPQTSKPQENQREPPLPVLDDRALRSFQLPSQEAFLQKPSTPLGNPPREEPRHGPWCNICGKNMQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8H4</accession>
    <name>A0A6S7K8H4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger BED domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026026">
        <property type="protein sequence ID" value="CAB4039898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8H4"/>
    <dbReference type="OrthoDB" id="8772022at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501:SF5">
        <property type="entry name" value="HAT C-TERMINAL DIMERISATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501">
        <property type="entry name" value="TRANSPOSASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="470" mass="52990" checksum="5410F09EFFB6B566" modified="2020-12-02" version="1" fragment="single">MSNEDDDSVTKDILNLEVEQCEDEEPEPTNENVNRVHQHNLSAFNKLCDEAKTKRKTPSRKRSNSDARDSGGPSAPKQQKLDAVLSSQVKYNANLVTQAQVDDLLIKFMTEALMPFSMVEQPAFKEFVLRLQPNRSVMCRATVVRRISDKASLVKKNLKEAMDKVEHVATTTDCWSAHGRSFIGVTGHWINPETLERKSCVLVCRRLKDNGSNFVKAFSVFAEQEQENHDDPDKDEECQFEDVFDDLTQASAGLEYQLPPHQRCAAHTLNLISTSDAEKAEADGNYKRLSRSTFAKCSSLWNKSSRSVQVAEMVKEKCGLSLIKPNATQWNSIFMAVQRIIRIIKGKGENVIHSVCSLADVPKFKPAEISFLNHYVEVMKPVAQALNILQGETNHSNAYMGYLAPTITILRDKLSKKLDIPVTKPLVQELLNGIDKRFDSILKDKKIIAAAILYPKFKESWSTDCDVIER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDF2</accession>
    <name>A0A6S7KDF2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032403">
        <property type="protein sequence ID" value="CAB4043445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDF2"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17004" checksum="05FDE6AE87D3B099" modified="2020-12-02" version="1">MGLKLNKSSTGIPQKCIKLACEYISETLTTIFNQCLLQGIVPDILKISKVTPVDKGGEITDPANFRPISTLSTIAQIFEKLIYKQLIRYIEKKDILFQFQFGFRKGRSTAQAITEITENLRKAIDNKLYTCGVFLDFSKAFDTVNHDTHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEK7</accession>
    <name>A0A6S7KEK7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA methyltransferase 1-associated 1, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014324">
        <property type="protein sequence ID" value="CAB4026643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEK7"/>
    <dbReference type="OrthoDB" id="5974517at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035267">
        <property type="term" value="C:NuA4 histone acetyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000812">
        <property type="term" value="C:Swr1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006338">
        <property type="term" value="P:chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000122">
        <property type="term" value="P:negative regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008468">
        <property type="entry name" value="DMAP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027109">
        <property type="entry name" value="Swc4/Dmap1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12855:SF10">
        <property type="entry name" value="DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12855">
        <property type="entry name" value="DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05499">
        <property type="entry name" value="DMAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="32479" checksum="1B2A34B987713759" modified="2020-12-02" version="1" fragment="single">ERSIEDLKDRYYDSITRLLKGRSPAGTEPENLPTSYDAEHEKTRKKQLLQLFNRTPEQIQEEEYLLAELKKIEIRKKERERRQQDLQKLITAAESTTEARNQEKGRPSNQNKKKQTKKKEAVVEKPAKIEGAGIKFPENKAAGVSLRSSRLKMPNSVGTKKSKAVEMLLDELRVELIPMPTEEICKKFNELRNDIILLYDLKQASTNCEFELQSLRHRYETLVPGKDIAETVPSSIAALSGITPSTTGSATPLIDNVIAPLAAANARKRRSVPQFMDQNPLKKKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFE5</accession>
    <name>A0A6S7KFE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A019613</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010350">
        <property type="protein sequence ID" value="CAB4019208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="61"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="5"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="107"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="129"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="150"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1430" mass="163180" checksum="480EB663090DD8BD" modified="2020-12-02" version="1">MFTTVVKKLEELDNIEADMKEIKKSLDYAHAEIEDLKNENNLMKLDQAKAAERIGNLERYNKNKPTEGMQKPALIDLTQPKQLGSEPRSTKAMKKFSLVDLTQQNRPRGESRSQRDNEAKGSFPNNSTDLHRNWEKNTSKSSLGTAAYKTPTSSDSSGDFSETSSDIHKTIQYYNGNLLLPIYSMENKILSPVEVINVLFNIDDDVKCDDLGSWKNQSYNKFLLTKQKNDWVLVDKKIVGEFPENEIVSIKRHYFTLQGDENNEDFKRRIDTVIRGIEHPIRQHSHGNAKTSQQYVRTWSSTKSLVQNNCTQAKLREVQYKTISEGLGGIEGCVSVRQVPRNRQQVKDFSRNILKENERKNLSRQGGTDDPWYRLLSECKGQASKPSTAFIRDVTTQLLTLVNLMLHQLRNSISYLKTGETEAIHLLSALSFYIFGRKIGSVQENGLIDAENQEKFDIMLVNSKEKWLTSHPNGLSFYEWFCDHKRQEFVTSAISPVRQRAGLGCPPERFTTNRSEQINRLIQDFTRSETNERKKIVKVATRADVTLDWCLTNSKVDNIYESIQLPPIGTSDHYTILMKAQPSPSKPDNSHIWKRDLRDSRIRPFGRYITTFDWSPILDIHDCDTKYKKFNDTMTVMIEKFFPLERIKVRKCDKPWMTSSIKSAIGRRQKALHESGKNSDIYKYWRNRVQSCIKVARKIYYMRWWKEVKAIGGLSSKNSWYSQLFSDDVRNCEELAENFNNFLTALTSHFDPLTLDEIQEGLEVPNHYLVDAQQIYMKLSKIKTTKSPGPDMFPNKILKTFAFELAPVISDIFNSSMTQGTFPKALKRSIVVPVPKVSPPKSIEDDLRPISLTSQIAKVMEDCTLDNFFPEVVNKLDTKQFALPKKSTTHALVYLLHSILVALERGFCTARLFFADFKKGFDLVDHNVIIKELTLLGTHPSIIRWIKAFLCDREQCVRVGTSMSSWKKTNGGLPQGTKLGPLLFAVLINSLLKNWPSRIKFVDDTSALEIIPRFSSSLMPLVVNEISDYALERGMELNYKKCKQMLINFLKYKGSDNENPIYVAGKPVETVSSFKLLGVWISNDLSWNTHVDMVLKKANSRLYALRLLKKAGLQASDIVQIYISFIRSRIEYASPVWSSIPKSLSDILESVQKRALRIAYPDLLYDEALEISNLQYPSTRRDISCKKFVESLRRDVSPYNPLTQIMEIRPGVKTHDYDLRNDRTAEQPLWSETTERKQPLILTSISQPSVSSATGPLTYRPNPMLEQQIPSVSPAMARQSVSSFVPASSLQPRAAVGHATDYHPPPSNASNNYCQRVAFPSPNIGEFHIYLMQFCPSHTSKCFGCGNPLKANNAPELPPNDLVIVSKMLGEWSYQGTSQSKMANVYFHCNQSCVARKQSGFQGLTCSIPQQIKPHLLEVHAAYLREHLGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KN30</accession>
    <name>A0A6S7KN30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chaperone dnaK2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006157</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034736">
        <property type="protein sequence ID" value="CAB4044374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KN30"/>
    <dbReference type="OrthoDB" id="5959138at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18316">
        <property type="entry name" value="BTB_POZ_KCTD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499:SF136">
        <property type="entry name" value="GH08630P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21913" checksum="FF5592E4C09277C8" modified="2020-12-02" version="1" fragment="single">MGRMNKPNNMQDHFQSFNSALQTEVQRIEAMRKEVESREKALNDEKERMMKIEVEDDDVISLNIGGKIMAASRSTLCQVEGSLLASMFSGRWEERLKKDKHENVFLDFNPDCFKLILNYLRAKKIETPRSKAKEPKPPRDETSNYWNLVDYLGLHEELKSTTSKTLLQLADTKEGTYCMNKDDGDVKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LHD6</accession>
    <name>A0A6S7LHD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023021">
        <property type="protein sequence ID" value="CAB4037383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LHD6"/>
    <dbReference type="OrthoDB" id="5988622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13979" checksum="63803DD62ED8A01A" modified="2020-12-02" version="1">MFTEWIRIWASHCAALEQTSLNVSLDDIQDLDVENWEEMTPGSLDFWIGMFVQDVSNTKGERYPGRSLYQIVSGLKRHLECKNRNDVNMFDKSNMCFAGLRRIVDAEMKDVPATGVTNTKAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRT7</accession>
    <name>A0A6S7LRT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026231">
        <property type="protein sequence ID" value="CAB4040069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRT7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11811" checksum="50A81EE8AB6A9473" modified="2020-12-02" version="1">MSFNEKEVGEIADIISDLSSSSQPNISESSSQETKAAGKKLLELDGEIGVLKSQLFVPMTNFAVKCTGYVVDDSSSTVARGFLFRVIPKDRVHWHCEDIEVRESDDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSS0</accession>
    <name>A0A6S7LSS0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017487</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032136">
        <property type="protein sequence ID" value="CAB4043342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSS0"/>
    <dbReference type="OrthoDB" id="7543819at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="530" mass="60431" checksum="4FFC368E6748219C" modified="2020-12-02" version="1" fragment="single">IQDLIPPQRWKHVDGLQNPADVGSRGILAKEIKEHPLWWTGPDWLKQNQSNWPSKFTAPPSLEALQSLGVTKDCLQLKEKEEVTLQTTTDTASTEPVIDITRYSSYIQLVRVTAWVFRVVTRSNLFSSTPLAVSELSKAKTWLIKQAQAQMFPNTIKLLRKKNLLPLSDPLQSLNAFLDKDGLLKVGGRLSQSMKDYESQHPLILHGKHYLSTLIVQSEHKRLCNAGPKLTLGSLQDTYHIISARRVVRKLIRECVVCKRASPKITTQLMGQLPSARVLPTFANERVSVDYAGPFTLKIGSVRKPTYRKAYVAVFVCLVTKSCHIELVSDLSAEAFLATLRRFVSRRGKPTQIWSDNAACFRRTDKDLRELYRLLQRPDMKESVMNFCSSQGIQWMFSPPTGPHHGSVWENGVKSCKRHLKRIVGETKLNFEEMTTTLCQIEACLNSRPLIPSLDTNDDDGISPLTPGHFLIGRPLEALPSRIYKEPILGLKRWKLCQALTQHFWKRWSAEYLNGLQRFNKWKVPKRNFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LT88</accession>
    <name>A0A6S7LT88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055411</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033338">
        <property type="protein sequence ID" value="CAB4043842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LT88"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="22596" checksum="0721AE26029F92F2" modified="2020-12-02" version="1" fragment="single">TVPRFKVILIILRSGRLLLDLYLIKINANVRELPGKKLPPNSPTPSKTKTLAVTTEEKDLGVWVTSNLTWSKHTLDRCAAANRMLGFVRRSATEITDKRIRRALYLAVVRPALGYATQVWSPQSVELINRVERVQRRASKFILGLPFMCDVSYKDRLISTELLPLSFWHEYLDLMFFFKAITGIVSISQNSLPERIAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTA9</accession>
    <name>A0A6S7LTA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029834">
        <property type="protein sequence ID" value="CAB4042289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTA9"/>
    <dbReference type="OrthoDB" id="5980834at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="304" mass="34588" checksum="02C17CE3A0D783A9" modified="2020-12-02" version="1">MGNEEAKLDTKLTQLRLTAQRTGKILDAGKRETIERHLKALQTTISETDPCKRTVEAEKIGKKEDLAEISDWNTEIEAKIGEAEDEVNRLRQWLDSKKMEEENYAREEQLKFEVKLGETKLQMQAKIQDANPGGHNTSKTETGEGMKGMSVRLPKINIVQFDGSYMDWPRFWGQFTETVDKSNIAAINKFTYLCGFLGPKVKRRVESLPFTAEGYNRAKSILQDQYGKTPEIVKAYIKEIMDLPHISGANPKKIAEFSEKLNYCVQALETLNKLKDVQGNVSMTLDKLPAIRGDLVRDDPDWES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DB77</accession>
    <name>A0A7D9DB77_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A068562</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000277">
        <property type="protein sequence ID" value="CAB3980293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DB77"/>
    <dbReference type="OrthoDB" id="8120989at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP9-like helix-turn-helix" evidence="1">
        <location>
            <begin position="355"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="2">
        <location>
            <begin position="417"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="3">
        <location>
            <begin position="544"/>
            <end position="655"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3980293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="722" mass="83355" checksum="09D2EB3204B5BA3C" modified="2020-12-02" version="1">MDFVIFQENGSDLATEDEQGNHQRTNSQMDSVTFEENGTDLVIQDEQVNNQRIDSQMGKYRIFLIVYKHDAYNNNHCLLNYRLRHLQRKRLRDLVIQDEEVNNQRIDSQMDSVIFKENCSDLVIQDEEVNNQPIDSQIDSVIFKENCSDLVIQDEEVNNQPIDSQIDSVIFKENCSDLVIQDEEVNNQPIDSQIDSVIFKENCSDLVIQDEEVNNQPIDSQIDSVIFKENCSDLVIQDEEVNNQPIDSQIDSVIFKENCSDLVIQDEEVNNQPIDSQIAEQTLYDDAKCQTSKKLSNNSPRKVKQRKIIDRQRKRLKRLKQQALNNKQKRRPRDLQKDKAIKILRKFLPEKIIKFIDMQIDLHHKNPNGRRYNEETKRFALSLYHVSGKVYRMVAKFFSLPSKRSLMRWVSGLPRCPGLTKEAMNVIAEKVSMGVKLMDENAKICTISMDEMSLKVNLAYDSCKDEIIGLKDFGDGEKGDSDKVKEKLFEAIDKVTAIGLTVTAIISDLGSNFIKLARELNITPEKPWFMHNGVRIIYIFDPPHLIKAVRNNMMNYEFHFEQKVARWNDVEALYAHDKTLSIRCCPKLTEDHIHPNGFKKMKVKLATQVLSHTVAAAMLMYVSIGTLPPSATGTSELLSKFDKVFDCLNSSSFKAGKILNRPITSTSSHLQFMKEMIPFIASIRVINPQNKKDVTNTLKCLRRLQIILEFFWFHATTRGQFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBY2</accession>
    <name>A0A7D9DBY2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Paraneoplastic antigen Ma-like C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A075760</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000214">
        <property type="protein sequence ID" value="CAB3979615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBY2"/>
    <dbReference type="OrthoDB" id="5988576at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048270">
        <property type="entry name" value="PNMA_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14893">
        <property type="entry name" value="PNMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Paraneoplastic antigen Ma-like C-terminal" evidence="2">
        <location>
            <begin position="9"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="143"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="213"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="168"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="234"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="27943" checksum="2B5F5BC784665239" modified="2020-12-02" version="1">MVSKGVTNEQQKVALLLHSKGMELQELYYTLKPVSEDNNLQECLNALDAYFTPKVNVAFERHMFRQMQQKENETIDQFVCRLRQKCISCEFTNVDEAIRDQIIEKCRDPKLRRKFLEKTGTVTLSVLQDMARVHETVNTQMQSMDRSGTNQVHGILQGNRRGKGKYGAKSDDRASHGNHKEGHIRQDKSCPAISKTCKKCGLVGHFAVCCRTKAPKKPSNGKQCQDGSYQVEEEKQEPETDNYAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBY6</accession>
    <name>A0A7D9DBY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A065925</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000457">
        <property type="protein sequence ID" value="CAB3982035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBY6"/>
    <dbReference type="OrthoDB" id="188741at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035082">
        <property type="term" value="P:axoneme assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037386">
        <property type="entry name" value="CCDC40"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16275">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16275:SF8">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08647">
        <property type="entry name" value="BRE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="159"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="243"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="446"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="544"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="661"/>
            <end position="816"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="851"/>
            <end position="899"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="86"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3982035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1001" mass="115455" checksum="7B6B6768D6C5D8F6" modified="2020-12-02" version="1">MADKNEGEGDLPRDSEGNSSQTKLPRPVSGKSGGSTGSKKSMTSAVGQLTAKALREFRLDDEGTNASESGAGDTETVNTNLGDANEGPEGETLLEDDEEYELQDENELEDEMNDVEFDENINVINDDELSGADDSDGDNDLVVLDPDHPLMVRFQTAYKNHLVKQKEKLELEEREVLEELTRQKKDREELGVNLYSSQQELARLQMLLEKEHDKYNENHNLRTKAEGTMSNVKEIHQKNTNILSDQRKKVQELRTEVENLASRVLYMQEAKGDVRSDIAVMKRAAEKAHGEVTEAEQLKKKQDFLVDRLTQKVDRLHEEIAMYDAQTLAQEEETRSAQRTLSEAVTEIEAIQLEKKQLYQQWQSSLIGMSRRDEAFAAMQQALSLQIERIKTIETELDGYRNSISKAQATNEQLTLMQNRIEADISMVKKLIGVSLNKQEILKTEYSKYSRMLHETEQALNKAKTDITLRESELTALRKQVEREYEEKVRIEEGIMEKLRSQMTLDKAAQYSKKVTDKIKKRGTELDNQLAQVENDISRDLMAISNVQTRWRNLEDVLKQLNEEIRQKNETAAKIENDIVKKNAVIERKQNMVDQFNKRIETLKNKDGGQQLGPLELQISTLQKQVEASNNSIIELQQFWLRNQSELVKTVQRVGQQSEEIKSLKKQYTILRHKKQRTEGDIQHHLSEMKDIERNIRNMQNEMTKLNTLITKERGMKDNLEQSNILMEDEFIRTLREAERESVELQSNIDGMKEEKERLLNSLVEAERQIMLWEKKTQLAREARATVDDDYGHGEIKAMKAEIHRMQVRYAQLMKQQEKMIQDMEKSITRREFIITRGDAQTKTGKSVNTKGAYQRKVAELKKKIKQTNNDANDCDKDIRSLQENQQQVSTQLEDKQSKVYQLQSSVDEADLNIDRLTDERKRNLADILAAQKKVKHLTAVKEGRYTTLCKTSETLDSELQKQKDRLQSLMTIVDRLNQEFPYAQPALRKITLSLGSRSEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFV9</accession>
    <name>A0A7D9DFV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA double-strand break repair Rad50 ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045633</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000794">
        <property type="protein sequence ID" value="CAB3984857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5982297at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005319">
        <property type="term" value="F:lipid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.230.10">
        <property type="entry name" value="Lipovitellin, beta-sheet shell regions, chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.20">
        <property type="entry name" value="Vitellinogen, superhelical"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015819">
        <property type="entry name" value="Lipid_transp_b-sht_shell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011030">
        <property type="entry name" value="Lipovitellin_superhlx_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015816">
        <property type="entry name" value="Vitellinogen_b-sht_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001747">
        <property type="entry name" value="Vitellogenin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16897:SF2">
        <property type="entry name" value="OS03G0226600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16897">
        <property type="entry name" value="OS10G0105400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00638">
        <property type="entry name" value="LPD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56968">
        <property type="entry name" value="Lipovitellin-phosvitin complex, beta-sheet shell regions"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48431">
        <property type="entry name" value="Lipovitellin-phosvitin complex, superhelical domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51211">
        <property type="entry name" value="VITELLOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="3163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="3163" mass="357914" checksum="681A85533A3B02E8" modified="2020-12-02" version="1" fragment="single">SVSQDNAFALLMIFSLSGVSFVAQPFDSMPWLFVITASVLMYTQLAKSTGFPEPPSTTQLYAETQLALISVDVEVLHQHSLPNDAYIARLRLNHVRIIRLRNGGRIKHTVDQNLEEKLSKPFLFLQDVKGNITQVFFPHHDQPELVGLKKGIVSALNLKIHPDLQNITYSTEEEDDSGIHLAYYNVNERNFTHLHLTKKWGSVDYLKHVDGRPVEGEQHSKSHYYTSLEIQDGAIKSAKRTHFSYLWSDAPYNRPLNKPEFQQQPNLELKASGESHLNLLRCVSPTNKRSKRSSEQLHSFLENLKQDTLSYDGIHRLKWSSIGDPDKPSRSLYELLRCYSDPSVKESELSECIRELHYLAKIDDEIFENIVNLTLERSHLNFSTWSGLVGAIVVRGDYKTQKILSRAILSEEPRPLLDREHAKLLEAVFFIPAGPLYPELLQALLSLHKNSSKSDEITVRAMLVTSGLVRKCHDAGYNRSLSESIAQHLHQNFKTHPARFHDEESQSHDEYIWSHVCAFGNLGHISSLNLITRYLDHDSSGIRYFAVSALRKLPTRYTDHQLLRILRNDEHVTVKAGVIEVFIERRQTLTNELRDAIEDALWISEEGDELDSKIVEFLENHNDKSHHVIKKLRKRRSIIRRKKRALIPALKPREFSLGVQKEWQKSFGGGQAGAETILRFANYVKLKIGIFGGSFEVNLDNMALFRAHVIKWSFDIVNGKAAFRMGAGFKNDIPKDLVHTIADNADSILANIDGISSIFTQHIQRFLDKLKKYLPFSLDRFVKFISETVEFLARTIQVTRFGNFFNGIVINLRSAWRASEFWLRIGNLVKKLTLNLSNINLSAGSFGGAFNFLNKLVDLFSRLRFRLPRNFPVNFNIKKFLTHINRPFHSTSDAVEDYFKTLGFNVPKNFFEMFHFNFALNFIPTLDKFKIFALRLAHFGNRFLEMLSVFRDMFNIELPRLYLPEFNLNVNSNNVFNNKDFDFGLPFDWRITFNFKTDFSGPDFAKLTNLFRFLTEVFLSLSNPNINFEQFFVEILPEFRIKFGSKELFGDEDVSNIAQWFQLVVKSFHNLLNHFDSKLFDLSNTANFLDELSKIIGHFSKGTLANVCKLQDFMLKSAGKLEVFGENLEKDMILGIRNVRNEAKQAIGEIINITLFVDEFIDELKQTVSSNAKTFVEQYLTALEGSLENVAQLADISVAFSLKSADKLNGLCHKTTNISGDILDQIQSAAQNAVSEIADFVTSNSEGLAIVIDQFKVVVKTLEDWHQENLAKHLGKVTIVSQTIDEFLSLIKTENKVFSDIHNVFKNINNVIQHLNNLPAHAQKAYDFADNIRDFETNAKRWGVEFGKLNIRQQFNVNFDEKLRKLCNEFHSFAKDTIKQIQNDNLFKIFREFVTKQTDFFISQSVKKLNFLKVPLGKARKNLEEMSNSVEEIEAFLLELRPFSENFSPVFQEIRQLPNCSDIYSTFDNIITNSGKKAVSFGKQAYKEYSTMKSEMKAFLELLPDEWESLSLQKCISGGTCLSNSLKKQGQSVSNKMEKLKKKFNDFNFEDKLETCKDSVEEVSQIFEKIENISKLVKEFSFKEEILKIRDLSQRITGKFFGDGDGHESQVKKRSAIQPTTIAKNIAEYTRKADKTQEMMKTLVEDIFNGLEKVSRHNIEPFQTKLENVRQQLNVSFLFGKSSAVIGPILQPLQSVVKSMTDFIQTCNNVVDPLKGTILDVLFKTSDFTEIFEGKLKHYGETVTEVSEEVSNLIDKITSFLNTVQLRQKGLDILNYKEWNQYQHCSAEVCLRLMRRSSALYLGTIFLWKYPHLDDLSSTSLSKTGKWLAPGLFDDYKIRGIAQLSDNEMLLGMRGVAANAEKASLLAVVDITSSNSEILKIVQLEKDGVPFRGDMGGVVVVKSLIWISSGNSLYGVRLSDIRNSMSLKRPSTISISKIKYLHYQVTSISYDDRDNKIWILEGNKAHNHDVGTFGGILEEKNSLVVTEEHTRGFTIVRQFGIKYACVAKCSLIAGYQCRLEFHKIDAGVLDESSILRVVRTPTGLEAIQTVDTEHVVAAFSSATFSEKDKIQQIGGDFEDRYFKFNVPVLKTNFSITENCLYFKVGWNWLIPRKPLFPFNEMICGTRRKRRALERALDEDVYTDELEKHHRTRRQATGGVACISNIEGKPFTGSLPIVPKIGFTVPVFGIPVYFFFGADLYYYANYRISLCLRDREVRLALIPGVWLTVYAGASLPLIIVEAGITVEAKILQTYLIPELSVRVDKWPLNACIQLKMQMTPLSIRVYLWYRFRLCPDISYEPWFSISISWNWCAKKTFAEWTWSLRSIHKTVFDNCKRDIDNTRPGVGVCNAKQVGNKKYLIQWQGFTEDTKIETYIVTIGSIFGSGDDHYSIHEERQSLTVPNLEIMHGRSVYVGVYAINGGGLKSDVAHCLVFTAKRRSPVITFINDGDSSTDIDYQTDATSLSMKYGFEGTFSDLSSITWGISSSGKCTFSESEADVLPLQNIGESYTIKKTGLNLISGSKYYTRIIVVNLLGLATVACSDGTTIDTTPPIPRKFTVGKNGGKFIPSVRRVSGKFEHFIDNESPIVHYEWKLIDEYTGKDVTSFTTIPLTQMSPLLDGLSLTSGGKYTAVLKGTNAAGLHAVVNVSGIIPDDTIPVCEGLPHDVIGFNDVDDRNFVSSLTNLTAMFSCYDDDSGIQSIQAGVGTYPGGEDVHSFVDITDLALKESEDRKTTWVTFVNVNITKRIRYHVTVKVEDMTGYRRTISSDGILMDTTAPTVLSTYIRDGLKGIDRKYSKEFDVFPAHWENAFADTESGIGEYFVGLGSSAGLGDKSAFRSTNLSTKALLRGDSLESGMKYYVTVVACNRVGICVNGSSNGAIVDFIPPHTGLVTAGQKGPPLEITWINKAAWARWQWCSADRSELSASPDTCDALSFYDEHSGIRRFGLTVLSYDTAKMLTQVKIVGRVVSGGLHVVMPNGVFSVVVKAEDRAGGSSNAISKSFIIDTTPPKIVKLYHGKENEQIMYTRAKDYLFTAFFEITEDISDIVSYSVGVSTFPEGDDLVSFTKYGINVVANIICVNWTLADTKTLINGRKYYITVKSTNAAGLFLINSSPPLVFDNEPPLVSLVFDGWGIQDSQYHPFPNIYRMHWQGVSDISGMRKLKYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DN51</accession>
    <name>A0A7D9DN51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024008</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001370">
        <property type="protein sequence ID" value="CAB3988732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="43709at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2130">
        <property type="entry name" value="F-spondin domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051418">
        <property type="entry name" value="Spondin/Thrombospondin_T1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009465">
        <property type="entry name" value="Spondin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038678">
        <property type="entry name" value="Spondin_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF038123">
        <property type="entry name" value="NF038123_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11311">
        <property type="entry name" value="SPONDIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11311:SF15">
        <property type="entry name" value="SPONDIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06468">
        <property type="entry name" value="Spond_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51020">
        <property type="entry name" value="SPONDIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1946" mass="209584" checksum="CA5A82FBC4C85B5C" modified="2020-12-02" version="1">MEMEINSKNAFKKYKGRGIFGGTGTSSIADIEVNSEYPLVSFITMIAPSPDWFIGVHDFNLCSTITGKWQDARVSDLPPYDAGTDSGTRFLSSDTITNPPEDIHLLTNNTEGSFKGDKPVRRFGTFTFVKTSDPNPIIKPSSTVRQSKQSPSVNRKSSAIMIDPKGSSTTPKTMQRIQSSASVNVIVNAMMIDPKESSRPPPVMKQIQSSTSLNIETSTMTINPPKSTIPPPPMQQSQPNANVNAIMIDPKGSSTSDPTMKQIQPSASGNIKSYTIKETSTPPLTMQQNQPSTSVNAIAIMINPKESSALPPTMKQIQLGSSVNIKSSMIYPKKITIIPKTVQQMQKSASINAIVNAIMKKESSTPLTLATQQSQPSTNMNIKASFIIIDPQESSTPPHTMQQLQPSASVNAIANAIMIDPKESLRTPLSTKKIQKSASVNDKSSAIMIDPNESTTPEKTAQQIHPRASVNAIVIHPKESSPPPQSTQRIQPSASVNIKISSIMIDPKESTTRPKTIQQMQQSASVNAIAIANAIANAIANAIMIDPKENSTPPPTLNQIQLSASVNIKSSSTMIDPKESITSPKTMEQMQPSASVNAMANAIIIDPKESSAPPPTMNQIQLSSSVNIKSSSIMADPKVSTTRPKTVQQMQPMPSVNAMANAIMIDTKEISSTPPLTMTNVQPNASVNIKDSSILIDPKESTISPKTMQHVQPSGSVNLMVNAIMIDPKESSTPPPTMTKIQPSAGVNIKDSSILIDPKESTISPKTMQHVQPSSNVNLMVNAIMIDPKESSTPPPTMTKIQPSADVNIKGSSIMIDLKERTTLPKTMQQMQPSASVNLMVNAIMTDPKESTTPPPTMKKIQPSAGVNIKDSAILIDPKESTISPKTMQQMQPSASVNLMVNAIMIDPKESTTPPPTMKKIQPSAGVNIKDSAILIDPKESTISPKTMQPMQPSASVNLMVNAIMIDPKECSTPPPTMTKIQPSAGVNIKDSAILIDPKESTISPKTMQPMQPSASVHLMVNAIMIDPKESSTPPPTMKQIQPSAGVNIKDTSILIDPKESTISPKTMHQMQPSASVNLMVNAIMIDPKESSTPPPTMKKIQPSAGVNIKDSSICIDPKESTISPKTMQQMQPSASVNLMVNAIMIDPKESTTPPPTMKKIQPSAGVNIKDSAILIDPKESTISPKTMQPMQPSASVHLMVNAIMIDPKESSTPPPTMKQIQPSAGVNIKDTSILIDPKESTISPKTMQQVQPSASVNLMVNAIMIDPQKSTTPPPTMTKIQPSVGVNIKDSSILIDPKESTISPKTMQQMQPSSSVNVMVNAIMIDPKESTTPPPTMKKIQPSAGVNIKDTSIFIDPKESTISPKTMQQVQPSASVNLMVNAIMIDPQKTITPLPTMTKIQPSVGVNIKDFSILIDPKESNISPKTMQPMQPSASVHLMVNAIMIDPKESSTPPPTMKKIQPSAGVNIKDSSICIDPKESTISPKTMHQMQPSASVNLMVNAIMIDPKESSTPPPTMKKIQPSAGVNIKDTFILIDPKESTISPKTMQQVQPSASVNLMVNAIMIDPQKSTTPPPTMTKIQPSVGVNIKDSSILIDPKESTISPKTMQQMQPSSSVNVMVNAIMIDPKESTTPPLTMKKIQPSDGVNIKDTSILIDPKESTISPKTMQQVLPSASVNLMVNAIMIDPQKTTTPLPTMTKIQPSVGVNIKDFSILIDPKESTMSPKTMQQMQPGASVNTMVNDIKIDHKANSTPPPTMTEIQPSASVNIKSASILIDTKKASTPPPPKQQSQPIASVNAIAKAIIMYAKKSYKPPPKTMQRIQPSSSVIVNAIMVNHKESPRTHSPMKQIQANSSVNVKSSTIMIDTNESTTPTKSIQQLQPSASVNAVPNAIMIDPKESYISLSTMQQIQPSASVNVKNSYYTKLNVSTQTLNQTETITAQQVFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DTW7</accession>
    <name>A0A7D9DTW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032407</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002360">
        <property type="protein sequence ID" value="CAB3993942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DTW7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9649" checksum="1F15CFC69B6575C2" modified="2020-12-02" version="1" fragment="single">MAKASFLGVVSFGRFAPDWGSAALTHTNEKVRFATLKLKNKVPGICLRGLKLLLECDESETSEMLKGILWCSFVKLRLYLKNGTSVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E639</accession>
    <name>A0A7D9E639_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily domain-containing 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A022167</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003617">
        <property type="protein sequence ID" value="CAB3999573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E639"/>
    <dbReference type="OrthoDB" id="370281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051068">
        <property type="entry name" value="MFS_Domain-Containing_Protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001958">
        <property type="entry name" value="Tet-R_TetA/multi-R_MdtG-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510">
        <property type="entry name" value="INNER MEMBRANE TRANSPORT PROTEIN YAJR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510:SF16">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY (MFS) PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01035">
        <property type="entry name" value="TCRTETA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="179"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="215"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="217"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="243"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3999573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="29230" checksum="1A05912D11C3F568" modified="2020-12-02" version="1">MKNLTFSQKRCLTVFAFCVRMFFAGTDQAVIFPSIWRYLQMFHADYWYLGLVLSAYYTVGIASAILVGRLADGNMNLRFSGFVWNLAEIIGNTIYSLHFNMYLPLLGRMVAGFGEGYASAIWAELARITTEEERTRYFALLKVSFFLGVVLGPALNVFLKEFDFYIGNWHIDFRTSPGFFMALMWTLATGIMFVFVYDLSDEMRKERGYEPVSDSLSEERFSKKEQLREAYSMESSEDKHGDMTSSPFTNNDVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E647</accession>
    <name>A0A7D9E647_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">G2 M phase-specific E3 ubiquitin- ligase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A005559</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004226">
        <property type="protein sequence ID" value="CAB4001992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E647"/>
    <dbReference type="OrthoDB" id="5980915at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00119">
        <property type="entry name" value="HECTc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="252"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="260"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="689" mass="77811" checksum="BE4B0E158E29848A" modified="2020-12-02" version="1" fragment="single">PLNVHLDELCKKDIEMSMHPPSRLTHVCFQHDFCTVFSEKIAWFKKGRRSRKVQELCLFSNQIDINRREQACIVQLRVYWYVHRGGGRLSNIFGTKRNNELRLTSSGKECFRSICRNNFSDKHTVKSRNRFGKKKGPLIKVFVSYGNELMKLVNGVFKPVKGKAMMVRVLSDIRKVPLLSQALEKHSPHDRSFDPNEDYTLAYPDGTEVLALPGQPAQIFQLDKYKEDVGKSFNRITLYLIQRDLLNNDGGNESDDCEFSSESVHSVTSEEPCTSAGSATNNTSKKEHKGSEEKERLGAIETNGDDVIHDDIEEKITLKEILSNLAEATSYDQISIFNLSRNHIWEGTKRAMNRKSFSPVNKLSVKFTDDIGQSEGAVDMGGPGREFFTLITEWLVNSRLFFGGISSKFLSLNATCLEEREYFMAGQIFAMALVHGGPGVNCLSSSCYDAIVNESGTQNLSATLDDIPDFEMRESLGKLLQTPCVDAARKIISDEKLDTIFDMAGTLQIIRIKADVDKIVQRTINWYVLGRSQPAYYSFKEGLRALGVLEAMLKYSNLFRETFCYNSEPLTVGMIMSVFKVKRAEEGSNRRNVEFLVLSHWNDFLQDAEEDPTQINLSEILFFASGCKIFPPQGLHCELQFLHETETDGKLSKFPKANTCNLPVVHGDYESFKNAVVFGIKNARGFGCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9K6</accession>
    <name>A0A7D9E9K6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054768</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004573">
        <property type="protein sequence ID" value="CAB4003236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9K6"/>
    <dbReference type="OrthoDB" id="6581673at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF19">
        <property type="entry name" value="ZINC FINGER MYM-TYPE CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="303"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="369" mass="42339" checksum="66F614E1C0362445" modified="2020-12-02" version="1" fragment="single">MSNNSIARDFFGTLQNLYVFIETCTKRHAVYLKHQRKLNASDDEGKKKREYVLKKLSDTRWACRADSITAIYHTLEAVIATLKEIRENEKKAHIAAEAKGLFQNVCDFEFVLALEVLKKVLLLSKGVSDKLQSEDLDVVTGCERVADLLSTVQALRCEPKFEEFWETTVTKCRSLNIEEPRQERTHKLPRRIDDNPDTAVHLTSKDKFRISFYYNVLDLMVSSIESRFDKNNAPVLMGLGYLNPSRIGNPEAWKHISVAAQWFQCDLDVDEVESEIFSLQTSSLLPNILEKAKLEKRKASFDDLFKALQAEPECYGNLTKLMKIALTLPLTSTSAERTFSKLKLIKSRLRTTMQQERLNSLMLMSIEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9Y5</accession>
    <name>A0A7D9E9Y5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A017854</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004632">
        <property type="protein sequence ID" value="CAB4003444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9Y5"/>
    <dbReference type="OrthoDB" id="5979062at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.60.10">
        <property type="entry name" value="CD59"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050918">
        <property type="entry name" value="CNF-like_PLA2_Inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045860">
        <property type="entry name" value="Snake_toxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20914:SF9">
        <property type="entry name" value="COILED, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20914">
        <property type="entry name" value="LY6/PLAUR DOMAIN-CONTAINING PROTEIN 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57302">
        <property type="entry name" value="Snake toxin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25037" checksum="AE1BD76AB616F42C" modified="2020-12-02" version="1">MKLALQIYILVVWCYVGVQCQLKCNQCVESGSGWGDCGTEQTCDNTQTRCLAMRWGANQIAKKSNTFDTRCATADECSTNGIKQLCSGNDCEAKCCQTSKCDPFAQIKIIRTDDRAFNCYECSRESLDSCTSSDQRCDDDQDACISFLMEGGNHNKVYTKRCARKNECTQSELDRLCALEKDQSNRKECRASCCFDEMCNQCSLKTVSILVIAGALLLTMFMLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EKY7</accession>
    <name>A0A7D9EKY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A070480</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006914">
        <property type="protein sequence ID" value="CAB4010815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EKY7"/>
    <dbReference type="OrthoDB" id="28357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043226">
        <property type="term" value="C:organelle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.60">
        <property type="entry name" value="Arfaptin homology (AH) domain/BAR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027267">
        <property type="entry name" value="AH/BAR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001060">
        <property type="entry name" value="FCH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23065:SF7">
        <property type="entry name" value="NOSTRIN, ISOFORM H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23065">
        <property type="entry name" value="PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00611">
        <property type="entry name" value="FCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00055">
        <property type="entry name" value="FCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103657">
        <property type="entry name" value="BAR/IMD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4010815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11696" checksum="9C577F25D7843685" modified="2020-12-02" version="1">MVKFEERFWDVKSFDELRKYCRQSNDFCKDVCGILHSRSKLEQTYAENLSQLALKASKCGKDLVGTLKSAWTKMAAEIENEAELHKYVTFIQYNYSVNKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELS2</accession>
    <name>A0A7D9ELS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020553</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007115">
        <property type="protein sequence ID" value="CAB4011335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELS2"/>
    <dbReference type="OrthoDB" id="5983036at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="24429" checksum="5B0E0DD852E269D2" modified="2020-12-02" version="1">MHINDWNSGSENQHVSLKPVSVLLAVGLQTPNPKSKAKDHQDALSKRLALWKDGEISKLIRDRGRIIQSRIGKFKGSNHPDKAKVFAKLVLEGQINSALRFLSENSNGGVLTLTDDVMTQLKQKHPEPQPAKLGSVLFGPLNDEIPESVYSQINGEIVRQAAFRTKGSGGPSGVDANGFRRMLACKSFKQSSTRLCEAIARMAKTLCTQYIDPTTIEALILVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8Z9</accession>
    <name>A0A7D9H8Z9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">E3 ubiquitin- ligase NRDP1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A020856</name>
        <name evidence="7" type="ORF">PACLA_8A058368</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000023">
        <property type="protein sequence ID" value="CAB3976980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020000023">
        <property type="protein sequence ID" value="CAB3976983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8Z9"/>
    <dbReference type="OrthoDB" id="5989761at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018957">
        <property type="entry name" value="Znf_C3HC4_RING-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00097">
        <property type="entry name" value="zf-C3HC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0436">Ligase</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 4" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RING-type" evidence="5">
        <location>
            <begin position="27"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="TRAF-type" evidence="6">
        <location>
            <begin position="110"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="TRAF-type" evidence="4">
        <location>
            <begin position="110"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3976980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3976983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="20549" checksum="41457E389A25837F" modified="2020-12-02" version="1">MACSSTEETYGYEGSRFENDVDENFHCSICYNVLKEPRMCRNNEHIFCLACITQHLKVNSQTCPECNEHLSVDTLRRPRVLNNYLSKLKINCDYASRGCLKFSCVGDLKTHVANCRFAPVLCSNENCGTVINKQEAAHHETVVCEYKKAKCHDCGLMQEVVERLERRLTELDWKVEAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC10</accession>
    <name>A0A7D9HC10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger 862-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A067886</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000235">
        <property type="protein sequence ID" value="CAB3979843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC10"/>
    <dbReference type="OrthoDB" id="5950594at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057456">
        <property type="entry name" value="Znf_C17orf113"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF9">
        <property type="entry name" value="ZINC FINGER PROTEIN 862"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25431">
        <property type="entry name" value="zf-C17orf113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C17orf113 probable zinc finger" evidence="2">
        <location>
            <begin position="96"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="751"/>
            <end position="834"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="23"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="754"/>
            <end position="775"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="785"/>
            <end position="794"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="817"/>
            <end position="826"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="851" mass="95910" checksum="510482C76FD92D2A" modified="2020-12-02" version="1">MSKKITDFFSNKSNDSEGNSRGTSTPITSETSAATTSEASAATTSERSSDLANLSQRKKTDRTLKSSTLKKWISEDLAPSNAFVWLNHEENGHGQVKLMKCMVCTTFEERIKHNRDFSNAWIQGSCNLRLSNAQDHAATKCHRHAYDLYIKNLTSKGELSSNMENPLRPHPSQRTLEDGFSKLNETQLEQTIKKFDIAYFVAKNELPFTVFEDLITLEKRHGVDLGDVYNNRKQCGEFIDVNAQFIAHQLNEDLTKAKFYSVLTDGSTDNSVTEKEVVYVLYFDPHSKSNPEEVEVKLSFLCLKDVKKADAEGITSAIEQSFESLGILPNELYSKLVGFGADGASVNSGNKNGVKALLEKNAPWLVYTWCVAHKLELAVKDALNGTVFDDVGDMLTKLYSLYHKSPKKMHELKELHDLLNYEFEEGSVKPKTCFWNTMVAFKLSALRIVLDKYGVYMQHLEHLSSDKEVTDRQKLKGYLRKWKSSRMLLYVALFIDVLNPAAILSKAFQDDPIDSVGAIHNLKRSKQSLDQLMSKSFEDLPSVKHVLNKLVVTDTTCTYQGIEFPVHSFNKAAADVKASKNTVIESIHSTVDARLEGASSIELESVAKILNTEHWKLLAEVDGVEFADNMITARPLSSNYNQAILEEWHDMLSHTVNFLQSEKANYKKTWRLLFNCSYSSKWKNILLLVQLLFSVPICNAKLERLFSKLKRTKSDARCSLGEERLTNVLRIEEEGPPLGSFDASPVVQMWQSQKVRRPNQKRRKKYRARKKKVKYYHVSEKDANSDDSVDDINDVIDTTPAPPASESDNVEDMEVSNDGTDSSGSGRTAALLFSDTDSEASDFVGFLPEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HDD6</accession>
    <name>A0A7D9HDD6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048716</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000435">
        <property type="protein sequence ID" value="CAB3981861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HDD6"/>
    <dbReference type="OrthoDB" id="6432901at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="15"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14951" checksum="8535BC3DBD8664CA" modified="2020-12-02" version="1">MPDDKKSKPILLPPKHEFTRLIIREAHELVHHDRIRETLNCVRRKYCVLRGRESVTRMVRMAMACNSMTTANTTFNSSGAEIESRYRERRACRQLLKVHQKKKNRPDSHRDELQRYLVNFYERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HF10</accession>
    <name>A0A7D9HF10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000166">
        <property type="protein sequence ID" value="CAB3979088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HF10"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12916" checksum="2CE51ACC830D286A" modified="2020-12-02" version="1">MSRNAEIRGVDYVFGGLMGIIIFITVCEFVQLTGCWLESPKDRIRLGWPTDFEGDRSVVPWALQEENCEEINYMNKKMWKDEEFGFPERMEEEETLDEIVVVSFELGALVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HFV9</accession>
    <name>A0A7D9HFV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Histone-lysine N-methyltransferase PRDM6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A078149</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000390">
        <property type="protein sequence ID" value="CAB3981445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HFV9"/>
    <dbReference type="OrthoDB" id="7734462at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000110">
        <property type="entry name" value="Zinc finger protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.270.10">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001214">
        <property type="entry name" value="SET_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046341">
        <property type="entry name" value="SET_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050331">
        <property type="entry name" value="Zinc_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16515:SF22">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE PRDM6-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16515">
        <property type="entry name" value="PR DOMAIN ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21549">
        <property type="entry name" value="PRDM2_PR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00317">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82199">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50280">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="242"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="258"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="310"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3981445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="443" mass="50411" checksum="0C30434BC64422AC" modified="2020-12-02" version="1">MSEHGEVSTATKLHPSGVFTMEHLRAYLYGHKKVQLIDTTKIQKERIKHLHINKEPKGNSWCDICNENPEECPMHGPLHSLRKLVNQSQIDSPIDYSAILKFPDEVGLCTSSIPGIEYGVCAKAAIPSGTWIGPYEGRLVRPEQIKRGTETEYMWEIFHDGQVSHYLDARDESNSSWMRFIRCARQRFEQNMVIFQYHGCIYYRTTKDVKVGEELLVWYDSRYSLIFGIPVALNETGSRGVNPPKGIVTQERSYGKRRNSDAEPQKVKRSMVDKDSTTVSKASTVMDKGSAPVSTHMDKASTPVVKHEPNSSTEDIPSSAMNYRNSMYHRGRWYTLPNNEGSSEQATHCSKCMKGFNNRETFLLHNCSKPIKNYTCAYCDRMCATLTELGKHMEDHVNERPFKCGYCPRSFNNAIALNLHVRIHGRHVSPKILLSQVGDKSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HHI4</accession>
    <name>A0A7D9HHI4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Androglobin-like isoform X4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A084318</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000677">
        <property type="protein sequence ID" value="CAB3983931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HHI4"/>
    <dbReference type="OrthoDB" id="9374162at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019825">
        <property type="term" value="F:oxygen binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22307">
        <property type="entry name" value="Adgb_C_mid-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.490.10">
        <property type="entry name" value="Globins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053033">
        <property type="entry name" value="Androglobin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054094">
        <property type="entry name" value="Androglobin_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054095">
        <property type="entry name" value="Androglobin_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012292">
        <property type="entry name" value="Globin/Proto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057249">
        <property type="entry name" value="Globin_CP_ADGB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46298">
        <property type="entry name" value="ANDROGLOBIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46298:SF1">
        <property type="entry name" value="ANDROGLOBIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22069">
        <property type="entry name" value="Androglobin_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22070">
        <property type="entry name" value="Androglobin_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52042">
        <property type="entry name" value="GLOBIN_CP_ADGB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Globin" evidence="3">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="371"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="484"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="602"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="671"/>
            <end position="702"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="738"/>
            <end position="783"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="708"/>
            <end position="735"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="387"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="397"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="523"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="607"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="672"/>
            <end position="702"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="763"/>
            <end position="783"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS52042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3983931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="783" mass="90092" checksum="18DA9F4B2BB3705A" modified="2020-12-02" version="1">MLDLGVKEQPQHMQERHYQVFMICLLEALSAQLGEEYTRDMHFAWKAFDFISQVYLKERFTFRPRSSADVARIGSVHKKRSDLSRCLSSSSHRMATIDDNSAAIRIQAAFRGYYIRKLNMAYKPESSIHQQVQENLVKAWGIIENNLEAFSIQLYRRMYKLDPNLFPMFPFYVDEWTRVTHNDYNGSFMEQPANTWFLLFREVFYVDEEILSLPKMYSNISTCFLRVINNDTFEEIPKVFQRVAPYNFTKNKHGYTFLAEARTTLSSLASGKFRFRLIGSTEPLPAPESDSVNAQFVTKEIKDYYMPNKDRILLRYSVQVTEDQLITVQLGTSKTDVLIKLQILDHEGEVASSCGRGHAVLPVYIVRRDRHAGEEENRQRKRGSRPPSKDSGKDGEAATARAGTAGGKNPKSKSKKGKDNSPAHSRPGSSLDKRNEGRGMNRSITQEDDMKPQVHKYIIQALVLRDSWPLSRESWDFVLAQRNAEKPDPPDYVSESASRGEKSAGQSKSKKSKDGKESRSSKNQSGSRPASQQLNFDTTKPHWTLRIVTDASFADDIDVKRDTERQDEIRAMKVAWEAAQPGRAAKAYQSRQKFLNEHLIQVKDPEIEGDQGEEQGEVADISSSSTSVIAAEQEEYFTEPPPRQPSRVLKPFDITPYMRCGGTRIVLDETEENRRRQQKQEIFRKHKQWRDEVEKRRDMDRQQRNIAKEKQIQMAEEWQAALDKVREDINTAREAYRHTFIVQEPPEEEVIEPVKERSPSPAKGRKTSKSPKGARKSPKAKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIU1</accession>
    <name>A0A7D9HIU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Steroid 17-alpha-hydroxylase 17,20 lyase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A058459</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 13">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Endoplasmic reticulum membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Microsome membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 14">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000884">
        <property type="protein sequence ID" value="CAB3985545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIU1"/>
    <dbReference type="OrthoDB" id="1470350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004508">
        <property type="term" value="F:steroid 17-alpha-monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042446">
        <property type="term" value="P:hormone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042448">
        <property type="term" value="P:progesterone metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.630.10:FF:000238">
        <property type="entry name" value="Cytochrome P450 2A6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289:SF1">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE_17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5 13 14" id="KW-0349">Heme</keyword>
    <keyword evidence="10 13 14" id="KW-0408">Iron</keyword>
    <keyword evidence="15" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 13 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0492">Microsome</keyword>
    <keyword evidence="11 14" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="9 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="13">
        <location>
            <position position="412"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3985545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="468" mass="54315" checksum="42A8DE9E4729AD61" modified="2020-12-02" version="1">MPPGPYPLPLVGNALNVGNEPPFSMEHLRENYGDIYTVTFPIGTFVIVNYGEFLQEALVSKKDDFAGRPDAAFFPLNSIFEGKNVLFADYGPPLMFRRKVVSTALHVFGKGIENVETRVSDEVDRLVTWIEAKNGQAFSPQYQVTFTIMNNISEWLLSKRYDLHDPMVEKLFDFNEKLLQVSRQGSYYQFLPFMKYLPTEFMKEYREIIKFREEFFTSHFNYHRGTYNPSVVRDITDALIAAYETEKERDRGKDFGKIEDIKFLMMDILLATTDTTSSIVTWLILFMVLNEEVQDKVYKELLDVVGEDRPPCWNDMPNLHYLKSTICEVMRLSAFGPLDVPHKAIRDSTINGYHIPKGTTILFNFWKIHLDPRDWKEPHLFNPKRFLDENGKFVGWDALKCFRPFGEGRRMCLGHALGKMQLLIVASKLLYRFKLKVPPGKPTPTLEGTMSAVRYPKKYDVVAINRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I0B9</accession>
    <name>A0A7D9I0B9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070652</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002498">
        <property type="protein sequence ID" value="CAB3994604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I0B9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="15274" checksum="6AEE5198DD77A36B" modified="2020-12-02" version="1">MDKRNKPTERSSRALKRLEAHLVMWAIRQQKIAQPIKMLVVRGAVYAKVRIADDQEVLRVDRSLVVERGKIEAIVLVEAVEKMHVKRVEAVRVLEQEVLEGNIRAGRIRRPRNRRRGQKNCFVNNDKTRTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I453</accession>
    <name>A0A7D9I453_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003988">
        <property type="protein sequence ID" value="CAB4001039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I453"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00821">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="222"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="35871" checksum="D43D36C8483CF47E" modified="2020-12-02" version="1">MEHIKEIIEIEESEELSWKDYAIKQGYLVKFNRGLLKAPKMQYFVLTDIGLISFESKPKHDTKPLCFLPYKQLSSIKLDHIELNSCKLCCMQLTSKTSPSFTLAFKCKEDRDDWMMIMMKAFSEALLTTSVFDKSSEIIDKNNASQSDDSTTKEKPERNVSTPMKKKLQQKLSTGSYGPSLRRKRRKGDKGSIRRSKSYDSLALHDVTNTAFTFPMKLLTAEPAKPETENAFQPQQSRKRKSEPDIHVTAHSPSAKTTDSKEKLFANSCSFEHRDSLTVEAEKQLKSKNDAKHKTNRFAKLLSMFENPALLSAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4Q3</accession>
    <name>A0A7D9I4Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084916</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003164">
        <property type="protein sequence ID" value="CAB3997690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4Q3"/>
    <dbReference type="OrthoDB" id="10058284at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF8">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="28300" checksum="8B792A4637CAE599" modified="2020-12-02" version="1">MEARLPSDKLNRLFVDLNSWHTNKSSTLEELQSLIGTLNFACKVIVPGRVFLQRIINLTRGVSKPHHHICLTNGFREDVKMWQLFLKDWNGTSLFLNSFWKNSTNLSLYTDASVTLGFGGIFRTQWFQGKWLPHQTLTTKNISINWQELYAIVVASYRLYGTFMASKTLRRQFTNELRTLLAQDGHHPAHYAGHSFRIGAATTTASQGLPHWLIQTLGRWSSDCYLRYIRTPINVLTDVSKRLIAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I5R1</accession>
    <name>A0A7D9I5R1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029445</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NKAP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003291">
        <property type="protein sequence ID" value="CAB3998183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I5R1"/>
    <dbReference type="OrthoDB" id="273141at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040466">
        <property type="entry name" value="NKAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009269">
        <property type="entry name" value="NKAP_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13087">
        <property type="entry name" value="NF-KAPPA B ACTIVATING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13087:SF0">
        <property type="entry name" value="NFKB ACTIVATING PROTEIN LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06047">
        <property type="entry name" value="Nkap_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="15"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="47"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="107"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="129"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="155"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="178"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="194"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="331" mass="38173" checksum="4424847A5B9E7E6E" modified="2020-12-02" version="1">MSEWRHSRSPASPHNNRKFRRSRSRSRSNERSHHRNGFENGFYPEGRASRDALERRGKGNYFQLFPRREGKKSHDEGRSERRRMERERICAMGVPGAWGLSPKAPLDDSDDEEEEVQTTKKNNLHNIHNKSESRAKGKIADRSESDDGTDEKSKKSSKKKKRKHKKKSKRRKKKSSSEESEDESEGDTDSANEWLEKRKDDKTGDIVVGPVPVVSLHGNADEKMDFGTALLPGEGAAMANYVKAGKRIPRRGEIGLTSNEITSFEDQGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFNYEERSKRETKILSDFRELVHKKINKQKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7Y3</accession>
    <name>A0A7D9I7Y3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Negative elongation factor B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018873</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003868">
        <property type="protein sequence ID" value="CAB4000568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7Y3"/>
    <dbReference type="OrthoDB" id="5548359at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032021">
        <property type="term" value="C:NELF complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034244">
        <property type="term" value="P:negative regulation of transcription elongation by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010405">
        <property type="entry name" value="COBRA1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13503:SF3">
        <property type="entry name" value="NEGATIVE ELONGATION FACTOR B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13503">
        <property type="entry name" value="NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06209">
        <property type="entry name" value="COBRA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="539"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="540"/>
            <end position="576"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="576" mass="65049" checksum="740015ACC2B13705" modified="2020-12-02" version="1">MAGFDEAGLSGSEYVRDSLGNCNESTLAMFLESFQQDNGILLPSLQQALPLLDLHNIPRYEFHHTVMENLREKLMSRFDVIGNDKLLLLLEQAFSFINVPALRPVVMDMLKRITAVPPKFIEMLAKEPELYKSCSLEVKRQIWIHDQPLFGDAVGPLLNEYLKDKNTVIFDTEDLTNQDFLSMRPKVRRQHSVVQQLSQMIGKSLQLYNLVLQFLRTLFLRTKEAHYCTLRAELLMAIHDLDVKEIKDVDPCHKFIWCLDACVRSQLIDANKIKDLKGYMKAAKATEEQVLGDIAMVLCDPFAINVIGKSIIKVLTHLTNTEALPRTNGDLTFLLSLLQLGLGAWSMIESQVFKENLLSNDLVVRFIPIVMATMVDDSVHRVEQKLPNKKNKERIELHHSFEQSLSEYSICFTIAFYLALYMAKNKHRHALGSLLPAIASSYSNHVLHDAHLHSLITIWACSQDEFTNAEFCEVVFDNFLLTMLSQESVVRQTLRLLRFVYSKMESEKVVAILTATQPSPENSEVIHELHLSIVDKVAGSNPSSQSLSSLEQPLSASSSGTSASSSPLNYLPPSSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I860</accession>
    <name>A0A7D9I860_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Zinc transporter 2, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A072187</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>Zn(2+)(in) + 2 H(+)(out) = Zn(2+)(out) + 2 H(+)(in)</text>
            <dbReference type="Rhea" id="RHEA:72627"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasmic vesicle</location>
            <location evidence="1">Secretory vesicle membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. SLC30A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004585">
        <property type="protein sequence ID" value="CAB4003277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I860"/>
    <dbReference type="OrthoDB" id="9944568at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030658">
        <property type="term" value="C:transport vesicle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005385">
        <property type="term" value="F:zinc ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010043">
        <property type="term" value="P:response to zinc ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1510.10:FF:000002">
        <property type="entry name" value="zinc transporter 3 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="entry name" value="Cation efflux protein transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027470">
        <property type="entry name" value="Cation_efflux_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058533">
        <property type="entry name" value="Cation_efflux_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050681">
        <property type="entry name" value="CDF/SLC30A"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11562">
        <property type="entry name" value="CATION EFFLUX PROTEIN/ ZINC TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11562:SF84">
        <property type="entry name" value="LD05335P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16916">
        <property type="entry name" value="ZT_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="Cation efflux protein cytoplasmic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="Cation efflux protein transmembrane domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0968">Cytoplasmic vesicle</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0864">Zinc transport</keyword>
    <feature type="domain" description="Cation efflux protein transmembrane" evidence="13">
        <location>
            <begin position="28"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="Cation efflux protein cytoplasmic" evidence="14">
        <location>
            <begin position="248"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF16916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4003277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="38779" checksum="56546EB848751993" modified="2020-12-02" version="1">MTKLEKDVCPVHSDTQIKHETYKARMQLFLATVVCIIFIAVEVAGGYLANSLAIITDAAHMMSDLASLLTSILAIKIAAWPATKSHTFGFFRAEMFGALLTIFLGWIVAAFLSYYAIERIVYHDYEIEGDAMVLTAGFCLIANILMGLILVVPGRSHGHSHGGKPSIREDGTQSTEELQNINIRAAFIHILGDTLCTLGLLIAAIIIKFRPDLTIADPICTLIFSTMSVLVSLNVFKDIMKVFLEGAPDQFTYDEVKSSLELIKGVTHVHSLRLWSLTVDLLAANVHLQIDENTSENEVLYTATKLLKHDYRVQFVCIQVENKFESWIEIHNQAKTEEQTTTGTELSSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8S4</accession>
    <name>A0A7D9I8S4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018824</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004531">
        <property type="protein sequence ID" value="CAB4003075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8S4"/>
    <dbReference type="OrthoDB" id="40579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050308">
        <property type="term" value="F:sugar-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07505">
        <property type="entry name" value="HAD_BPGM-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="entry name" value="Putative phosphatase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051806">
        <property type="entry name" value="HAD-like_SPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43481">
        <property type="entry name" value="FRUCTOSE-1-PHOSPHATE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43481:SF4">
        <property type="entry name" value="GLYCEROL-1-PHOSPHATE PHOSPHOHYDROLASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01129">
        <property type="entry name" value="C1.5:_HAD__Beta-PGM__Phosphata"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00003">
        <property type="entry name" value="Haloacid_Dehalogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21008" checksum="25F522A0D1B3D4AA" modified="2020-12-02" version="1" fragment="single">MKWNVVMDRIPPLPNDLEAIIFDCDGTLVDTMPFHLQAWEKICKETGLYFSKESFIAKAGIPGREIIRTMANKQGIYLDVMNVYNRKKALYIQSMRQATPASLPISCVVNFAIEAKATNDSLLFGVATGSSRFQVEQALELAGLRHLFDVIVGNEDYSQHKPSPDAFLTACEKLKVNPEKCWGFEDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IIX9</accession>
    <name>A0A7D9IIX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033273</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006869">
        <property type="protein sequence ID" value="CAB4010681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IIX9"/>
    <dbReference type="OrthoDB" id="416987at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16738" checksum="7702BA0D4B09698D" modified="2020-12-02" version="1">MLYSLDVIGVEDRGEDDHLDVYTEFNETIVRDKEGRYQVNVPWIPGAQLRETNKVQIKKRLRSVTKNSIKTSTERKSNSDLPEYPLAQRRVPFFSEPPRLQHHYDNQPQEKHTQSDTLIRHIHEQTFHLGIASTMGVIREEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZ55</accession>
    <name>A0A7D9IZ55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009507">
        <property type="protein sequence ID" value="CAB4017344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZ55"/>
    <dbReference type="OrthoDB" id="8045002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF19">
        <property type="entry name" value="ZINC FINGER MYM-TYPE CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="373" mass="42876" checksum="91EAC1813F082945" modified="2020-12-02" version="1">MIEEFFTTLQELYNFLTKSTGRFGKLKSKIESLQEGLIMKNLSQTRWIGRAESIKAVWFSYETVIGTLHDIHECDETDHDAKKTAKNLLDKLKSFEFYVSLLFMKNVLYKAKIVVMEMQEIEQDILASVEVLQQTRNEMLRMREDDVAMEGIISAATGKCESYGINVEYEFSKRHRPRRASARFDENFANATVPSFSQHYRKEMFKVLDRLVSDINEIDEYLSDIVLPIIILLPTNLPNCSKQEVENLCAAFPQDFKDPDAMCAEIKLISSDIEKSGAKNLKEAAKCVLGKQQFYPNLTKAYQLALTIPVSVASNERSFSKLKLVKSYLRSTMKENRLDDLMILSSSVDILDELELDKVANSWSLYKSRMIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZ86</accession>
    <name>A0A7D9IZ86_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TNF receptor-associated factor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A081795</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009236">
        <property type="protein sequence ID" value="CAB4016726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZ86"/>
    <dbReference type="OrthoDB" id="10002862at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009898">
        <property type="term" value="C:cytoplasmic side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005164">
        <property type="term" value="F:tumor necrosis factor receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006915">
        <property type="term" value="P:apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.210.10:FF:000001">
        <property type="entry name" value="TNF receptor-associated factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012227">
        <property type="entry name" value="TNF_rcpt-assoc_TRAF_met"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049342">
        <property type="entry name" value="TRAF1-6_MATH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF138">
        <property type="entry name" value="RE66324P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21355">
        <property type="entry name" value="TRAF-mep_MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015614">
        <property type="entry name" value="TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00061">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0053">Apoptosis</keyword>
    <keyword evidence="10" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-0832">Ubl conjugation</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4016726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="403" mass="46399" checksum="DE69088682C779C2" modified="2020-12-02" version="1" fragment="single">VFPDVFTKRELNNLRLHCPNTGCSWICTNEEMQKHDAECAFRLISCIHTQCKDKFLRSHLGEHLQSECKYRNVKCQYCRKDVPFASIQSLKRKELRQHANDGLINHVRLMLQYILSFVSQLSNYIPRTEFTGMMQKVGNDITEVRSGLAEKFVMVVGKLTGLERRIEGLESSGGGDGRNRNEVQELKSKLRDLTTESSNLRERNMSLEREVRDKISIIDRLRSRMDQMDESLALNTVKLTDLESQRGPRAQQVIHSYNGTLLWKIESYQRKRQDAINGVKTALYSPPFYSAQYGYKMCAKIYMNGDGFGKGSHLSLFFVVMRGDFDALQTWPFQKKITMMLLDQGNGDHMIDAFNSDPQSSSFQRPKSDMNIASGSPLFMPLDSLNNRQYIKDDVLFIKIIVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JJZ9</accession>
    <name>A0A7D9JJZ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">KRI1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055566</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017662">
        <property type="protein sequence ID" value="CAB4031482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JJZ9"/>
    <dbReference type="OrthoDB" id="10252032at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030686">
        <property type="term" value="C:90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000447">
        <property type="term" value="P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018034">
        <property type="entry name" value="Kri1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14490:SF5">
        <property type="entry name" value="PROTEIN KRI1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14490">
        <property type="entry name" value="ZINC FINGER, ZZ TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="28715" checksum="8935DFF0C6A7039E" modified="2020-12-02" version="1" fragment="single">MADIMEYEDCVLKVNKTYAAKFQKKSEKAELDRLKDKYGENEDEDSESTSESEDEDAKELNTEKERDFLKTLALIKNKDPKIYNKDTKFYSDEVNVNVEDRKPEKHAKPIYLKDYERERLLEKGSEAFVSEESSEDEEGTTAKPPLTYIEEQEELKKSFTDAVNAVDDNEVHFLTKRKKSKREKEVEDKNYADWLQEKNLTHKDKKELEPLMQLWNDPNLDEDEKFLRNFILQKQYIDKDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JY19</accession>
    <name>A0A7D9JY19_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015945</name>
        <name evidence="1" type="ORF">PACLA_8A065855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007805">
        <property type="protein sequence ID" value="CAB4013221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020024094">
        <property type="protein sequence ID" value="CAB4038341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JY19"/>
    <dbReference type="OrthoDB" id="5988544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6785" checksum="1E5151D7A8B64CDD" modified="2020-12-02" version="1" fragment="single">MAVKNNSQIHWEKFKEIRNKVNSELTKAKTAFFCNKFENCAQSKDMKHSWKLINILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8A3</accession>
    <name>A0A7D9K8A3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012333</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030319">
        <property type="protein sequence ID" value="CAB4042532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8A3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="107"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15837" checksum="4C924031490B38E7" modified="2020-12-02" version="1">MEANTDRGSSRIIENEVSSHNSTCSVVIEGIKLEMVILETRLLNTIKENKSDICSLKFKVKDLEGVIRHQDDAIIKLSEDNLILKSKLSSFENLTYKVICHDHDHDHDHVNNERANESASTTQVNDQFHWIPRQRPTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KG91</accession>
    <name>A0A7D9KG91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088578</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036841">
        <property type="protein sequence ID" value="CAB4044915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KG91"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12815" checksum="DA7D51868E5A9D4A" modified="2020-12-02" version="1" fragment="single">MKLSVFVIETLHTRSAEVLKETAALVSEHEYLTPEDKQSIIERVHALSPRTDGLPAAAVNKYKRMNREFLVLIESEVESRDAWITKNEAKMALPPAEDVQDLEGFLQLKDAHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KGF0</accession>
    <name>A0A7D9KGF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Neuronal growth regulator 1 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035831">
        <property type="protein sequence ID" value="CAB4044690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KGF0"/>
    <dbReference type="OrthoDB" id="5975740at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11920" checksum="F3AC73DE9DC40C0E" modified="2020-12-02" version="1" fragment="single">SPQAEVNTSSPIHLNSTDEQAIIRCRGRGYPPPVVSWFRDGKRIDTNNSSDVYQNVGTTTPARFLGWISTILYIKPDSTHSQFGNYTCKATKLKDNEYDLKVVEIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KJC2</accession>
    <name>A0A7D9KJC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081538</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036683">
        <property type="protein sequence ID" value="CAB4044883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KJC2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="707"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="707" mass="73176" checksum="48F6BBB16E56D2EE" modified="2020-12-02" version="1" fragment="single">ISQCNHGVSPFKRTRPAAGRFIPIQPKPDLAVSTSTTAGPEATKNAITGTSVAMPTNLQLPVLDNPGLESRVLLLPLGSMTEQDPTSFPNVFSAAESSQKAQSPLNMIPQSQLQSSTIAGTESLPPALSSVDIVTQSQLPLSTIVSPSTTPVDSSVNVVPQSLLPSTIHGTHSRPLVFNTNAMTTPGHSLSPSGPWTISTPTRVPSVTMETLFPSSSTTVFNPNAITTQGPSMPSISLRTVPTSTMIPSVAMATFPEAPFPSTVFSTEATTTLGRSLSRSLPWTVPTTAMASSVTMPTFPATPSPSTAFSTDGMTTPGPFLSPYVPWTIPMAPSVTMETFPATPSPSTAFSANTMTTPSPSLSSYVPWRGPMAPSVTMETFPATPSPSTAFSADAMTTPGPSLSSYVPWRGPMAPSVTMETFPATPSPSTAFSADAMTTPGPSLSSYVPWRGPMAPSVTMETFPATPSPSTAFSADAMTTPGPSLSSYVPWRGPMAPSVTMETFPATPSPSTAFSADAMTTPGPSLSSYVPWRGPMAPSVTMETFPATPSPSTAFSADAMTTPGPSLSSYVPWRGPMAPSVTMETFPATPSPSTAFSADAMTTPGPSLSSYVPWRGPMAPSVTMETFPATPSPSTAFSADAMTTPGPSLSSYVPWTGTMVPMSVSRSISLPNSSCMTMTSQGSNIVPGNHFGMSSDLSQADVDSGES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KX05</accession>
    <name>A0A7D9KX05_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">3-mercaptopyruvate sulfurtransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A074968</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011771">
        <property type="protein sequence ID" value="CAB4022031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KX05"/>
    <dbReference type="OrthoDB" id="270167at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004792">
        <property type="term" value="F:thiosulfate-cyanide sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01448">
        <property type="entry name" value="TST_Repeat_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01449">
        <property type="entry name" value="TST_Repeat_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.250.10:FF:000001">
        <property type="entry name" value="Sulfurtransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.250.10:FF:000015">
        <property type="entry name" value="Sulfurtransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="entry name" value="Rhodanese-like domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001307">
        <property type="entry name" value="Thiosulphate_STrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045078">
        <property type="entry name" value="TST/MPST-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11364:SF27">
        <property type="entry name" value="SULFURTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11364">
        <property type="entry name" value="THIOSULFATE SULFERTANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="Rhodanese/Cell cycle control phosphatase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00380">
        <property type="entry name" value="RHODANESE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00683">
        <property type="entry name" value="RHODANESE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4022031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="293" mass="33024" checksum="CBCF71626B79A93E" modified="2020-12-02" version="1">MKIPSIVNVQWLAQAMLKTKPLKQLRILDGTWRLKENGSVQAQQDFLDEHIPGAVFFDIDECCDKTNVYPHMIPNEKLFAEYAKHLGITNDSHIIAYDNDEDFGVFSSPRVWWMFRCFGHEAISVLNGGFHKWLAAGLPVESGEGKPVETNQPFNAKLNPYLVRDYETMVENVKAGGLETVVDARSKQRFQGTDSEPRPGMHVGHIPFAGNVPFIELLDERREFMRDSEQLKQVFSKHNVDLDRPITTTCGSGITACLVALAAHQSGAKHVSVYDGSWAEWGRRATPDLVERN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHT8</accession>
    <name>A0A7D9LHT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086076</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018484">
        <property type="protein sequence ID" value="CAB4032543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHT8"/>
    <dbReference type="OrthoDB" id="6114255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="441" mass="50975" checksum="12F7CD336713B8A9" modified="2020-12-02" version="1">MLRLLLVKSQKINISVIDSLSGVNGPTWLLELINVAHLASKKFYQNLNQYLPKLLINKDLIPTIKTGESFDRYVLSKLSWHFTVATISKTWVVENIDSSVNKYIRKWLEIPISGTLSNVFLTRYKFGLNILPTSVKFIQCQTVLRYALKTSPNDSINELWKSTNNHTNVQYDSYNSTKVVLKTFHSLQENKLRNRLKCPGSFFENVSKFSLLQLNAIWSVSQSKLPKNIFNFTIRYINNTVPTRKNLSRLGISSSSDCSFCLHPESLLHVVAGCQYYLERFTWRHDCILNFLAKTFQSLNECKLHVDLPGFESPSIITGDEYRPDLLVSTSDKHLYVVELTVGFESNLTNNVNRKKAKYKNLIRELDQNFTSVKFINLSVSSLGVFDKECHTFVKMLNELGLDNQHQQYCIRKIISIAIRSTYYIFCCRNKEWTNPELMNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LII7</accession>
    <name>A0A7D9LII7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060778</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018808">
        <property type="protein sequence ID" value="CAB4032916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LII7"/>
    <dbReference type="OrthoDB" id="10608757at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="25575" checksum="DDE8E8F5D5714FBA" modified="2020-12-02" version="1">MARSCSYDWAGICIGDLHNKGYFNEACFKEHGKSGLHYIIYDVLKRTKLTTEVFKTRKFQENFLLQTREANRDVSFGYCMAACMEFHRSTFFPTNADFTQSMRTSCNHSGVLLSRFKEWVESFDVHHASRHSEKSSFPDQLKAGWFCMTKEFFANQRRKEVRTMPLGKKGILQDKISSKVIFSYEKGVEKIKKDLKVKLYECFPDLRYNILVEQSGTSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LS26</accession>
    <name>A0A7D9LS26_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017285</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024242">
        <property type="protein sequence ID" value="CAB4038463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LS26"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="10727" checksum="5B4EF7AE1FC2DEA8" modified="2020-12-02" version="1">MATVDVRYSSDNIYGCDDDSCDDDSCDGDDDDNCDDDNCDDDNCDDDNCDDDNCDDDNCDDDNCDDDNCDDDNCDDDNSDDYNCDDDNCDDDNCDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M1H7</accession>
    <name>A0A7D9M1H7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028954">
        <property type="protein sequence ID" value="CAB4041792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M1H7"/>
    <dbReference type="OrthoDB" id="116216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23636" checksum="C73C0D7C869F9F5B" modified="2020-12-02" version="1">MAVEPEQAEAPNVETNKLSLSLFRRPDKFKIGEDFDLFIKKCNLYFEAVELEDVKKRRFALLFNLSEDAFRLAEPVEFGEGENAYKDWIGKLKSLFERNQTATEKRYNFHRREQEPGESVDSYAVSLREAGARCGFHGDEYSSRLVDQFILGLSDKATQNKLLQEPPNSLDDALLIARRFEAANATMKTLAREATEKLSRTTIGSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MER3</accession>
    <name>A0A7D9MER3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042567">
        <property type="protein sequence ID" value="CAB4045861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MER3"/>
    <dbReference type="OrthoDB" id="8042009at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13252" checksum="C4E0DEFC002F3151" modified="2020-12-02" version="1" fragment="single">QLRNQPINDASPQSSLNGLTSEQIFEKYSKCFDGLGRISDPYHIKINSDATPVVHPPRKLPSALRDRVQNELQEMESRGIIKKVNEPTAWVNSMVVNEKRSGKLRICIDPRDLNKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FI14</accession>
    <name>A0A6S7FI14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003516</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000029">
        <property type="protein sequence ID" value="CAB3977097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FI14"/>
    <dbReference type="OrthoDB" id="5984733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28562" checksum="535E6724A130F025" modified="2020-12-02" version="1">MKDAVSNILEQFNNRFGKYPKFAQFDQGTEFYNKDVKSLLNKHIIDFFSTYSDKKATVVERFNRTLKALMWKYFYSASTYKWLNVLQDLTDNYNSSVNRSIKTTPDSVNESNWTEVWKTLFSHNLGKPSEPKFAVGESVRISQYKSVFTKGYEANFTEELFTVTEVYHGHPNTYTIKDSDGEPIIGRFYEQELYSAEGREPDFRIEKVLRRRTVKGKKMALVKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNU1</accession>
    <name>A0A6S7FNU1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LicD/FKTN/FKRP nucleotidyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084359</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000052">
        <property type="protein sequence ID" value="CAB3977526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNU1"/>
    <dbReference type="OrthoDB" id="444255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009100">
        <property type="term" value="P:glycoprotein metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007074">
        <property type="entry name" value="LicD/FKTN/FKRP_NTP_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052942">
        <property type="entry name" value="LPS_cholinephosphotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43404">
        <property type="entry name" value="LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43404:SF1">
        <property type="entry name" value="MNN4P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04991">
        <property type="entry name" value="LicD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LicD/FKTN/FKRP nucleotidyltransferase" evidence="1">
        <location>
            <begin position="73"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="32618" checksum="E76584B8E0709F6F" modified="2020-12-02" version="1">MMRLSGRQTVIVFTTAGIWLVVFWLQGLLQSNTNLKIRGPNRQLKTEHKACPPNKYKELLAGMLQHWDKLAQLHNISYVIGLGSLLGQYRNGDIIQWDDDIDVLVDIVQYRKLRTLAEERNFVQGQDLKFRTVVQPDFEQREEKKRRRITCYGKEVYFQVDRCSFISPMARVISGLRGLDIFPYVVNRTSGRIYDVEMKKYYNISHFFPFQKCVFTGIQTWCPRKIRDVLESAYADLRPEYICENGRWVIRKLDKSENIVSTGLRHWIVNFFPPWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPK1</accession>
    <name>A0A6S7FPK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Nk homeobox 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A065637</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000149">
        <property type="protein sequence ID" value="CAB3978883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPK1"/>
    <dbReference type="OrthoDB" id="6159439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020479">
        <property type="entry name" value="HD_metazoa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017970">
        <property type="entry name" value="Homeobox_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050394">
        <property type="entry name" value="Homeobox_NK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24340">
        <property type="entry name" value="HOMEOBOX PROTEIN NKX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24340:SF70">
        <property type="entry name" value="NK7.1, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00024">
        <property type="entry name" value="HOMEOBOX"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00027">
        <property type="entry name" value="HOMEOBOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 5 6" id="KW-0371">Homeobox</keyword>
    <keyword evidence="4 5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="DNA-binding region" description="Homeobox" evidence="5">
        <location>
            <begin position="133"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="91"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="192"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="209"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3978883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30331" checksum="D52FA6DF5EF0E43B" modified="2020-12-02" version="1">MLRGYSVCRGKEEFHGTWHAHLYSKPPEQPTPHFIEDILGLRSPTVYQDTPKTVDKQNREEIAEVDTSCIRKSKQRAKYKSRGIKGTITEKNRDSTRSKAKAIPKTTKKEQITTKPKATQPPKVENQVEVKKKKKARTTFTGRQIWELENTFREKKYLTSAERNELAELLNVTDCQVKIWFQNRRTKYKKLEVTPTNAEDENGEESRSRASSPGSPVTSEGSTADPDVSPGKMSPEDFGKGQKISVKNENNNEESVDVSMEVDDRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPT8</accession>
    <name>A0A6S7FPT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035346</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000084">
        <property type="protein sequence ID" value="CAB3978019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPT8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="13877" checksum="3064E2900BBB21BE" modified="2020-12-02" version="1">MVDETLALVENDVFNNASTVRAYKLKYTDSVYADTTYVTALLRFRRAVSALQVYNDFICKHYSGRRKNIDLFSIWHPTQSEIRAREISDDIGEDDHFMGDIVTRDMLWYLKDGEYTIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXV2</accession>
    <name>A0A6S7FXV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">G- coupled receptor 157-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A028691</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000824">
        <property type="protein sequence ID" value="CAB3985074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXV2"/>
    <dbReference type="OrthoDB" id="100006at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007189">
        <property type="term" value="P:adenylate cyclase-activating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022343">
        <property type="entry name" value="GCR1-cAMP_receptor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23112">
        <property type="entry name" value="G PROTEIN-COUPLED RECEPTOR 157-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23112:SF47">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTOR 157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02001">
        <property type="entry name" value="GCR1CAMPR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3985074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="41765" checksum="704DF1B43E1C1E17" modified="2020-12-02" version="1">MLAFALFLCTVVCTTKAIADILNEEEPTVASGTTSLTTPDINPYHKTYNRVLFTVISSLSTFGSVAIIVTYFLWRDLQTTTRRILVYISIGDFFATYPSVVIFWTKQYEKNGMSCKLQSFITSTAIMWSFFWTTSLAIYLYIALVKKRHDISEKLMVTFHVVNWCLPTVLVGAALYEKQLGTTKSESTAGWCWIRIGEDRERAVIWMLICGKFWEILSYFINGILYYCITRTIKKEVSERMHLMSPQSIQIAEQGRGKLVLVPVIFVVLRIWGTIRFILFASSAHPPTVFKDVMITLQLIGDNAQGITNFILFCVLTEKFKQQIIRVFGICNRRYKAGRLPSGQANPDVHRTFSDTTGGDTYTFYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G106</accession>
    <name>A0A6S7G106_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000662">
        <property type="protein sequence ID" value="CAB3983823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G106"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="65" mass="7450" checksum="07A14213A8021913" modified="2020-12-02" version="1">MKYIRLKRASKLSTPFDISLEAVETPQKSLPIDQEEPGYETVSRVVREFYDDVVTNANNCKDEGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2A9</accession>
    <name>A0A6S7G2A9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025007</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000933">
        <property type="protein sequence ID" value="CAB3985875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2A9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24678" checksum="03497E841D38D351" modified="2020-12-02" version="1">MIDEGYWTFNQLRKELEENGLTLRKYPDGRIRIDFAKGTNSAGLRNLTSILGYRSSNGPTYTPHISDRPVDIHEGLRYLTVSCNLVNREHNIGPYGNRSTVITSLPIDGTRPLFGTTTKYNDIESRVRVDAGKYSEIRFEIGSNTGIIPGDVFISTLNKMSILLGYDYFDTTAEDLDILKRKLAVVEKGQQGNTAEIVKHTNDVVRLNSLGEITLPPRIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8C5</accession>
    <name>A0A6S7G8C5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Galactose-3-O-sulfotransferase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A041063</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the galactose-3-O-sulfotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000431">
        <property type="protein sequence ID" value="CAB3981811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8C5"/>
    <dbReference type="OrthoDB" id="514299at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001733">
        <property type="term" value="F:galactosylceramide sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009247">
        <property type="term" value="P:glycolipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009729">
        <property type="entry name" value="Gal-3-0_sulfotransfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14647">
        <property type="entry name" value="GALACTOSE-3-O-SULFOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14647:SF85">
        <property type="entry name" value="GALACTOSYLCERAMIDE SULFOTRANSFERASE-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06990">
        <property type="entry name" value="Gal-3-0_sulfotr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3981811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="478" mass="57004" checksum="C4BD792BB9B7565B" modified="2020-12-02" version="1">MISMIWRKRGKLCIIAGLLFILSIISNKVLYKKVSPQNESKRYKLNDKRSMGSDLASDRRNVERGDKRRNEELNLVGMEGQKMELREQDVQEKKEALHKQSCKRHDVVVFIKTHKTGSSTITNILNRFADMNDLKVVLPMGYFYRFRWPVPFHWSAVDLWRLDGDTPNILSNHARYNRPTIQLIMKKGAKYITILRNPLDQYESTFHYMEFRKFLQLNNSKNPLADFVENPVPKLYEMREKYRGIPESMNLVKNPMFFDLGMYPPAYDNMTRVRGEIMKLDRDFELVLIMEYFDESLILLKKAFCWTVQDILYVKFNQRQHKPKVQISEKVKRNILNWNKADVMLYDHFNKTLWRKIEDYGPSFWKDLNAFRRLNSKMQSSCVKKRQFSEKAFMSNGQILSFRLNPNVPSYDRYFCMKIVRNEIEYIDYFRKKFKPYGSYQTLLEKAGKKKRSTRELIERLHIAANIKFADSVPRAVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAS5</accession>
    <name>A0A6S7GAS5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Formimidoyltransferase-cyclodeaminase</fullName>
            <ecNumber evidence="7">2.1.2.5</ecNumber>
            <ecNumber evidence="8">4.3.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="20">Formiminotransferase-cyclodeaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">PACLA_8A015022</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="21" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="21">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds and promotes bundling of vimentin filaments originating from the Golgi.</text>
    </comment>
    <comment type="function">
        <text evidence="18">Folate-dependent enzyme, that displays both transferase and deaminase activity. Serves to channel one-carbon units from formiminoglutamate to the folate pool.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid degradation; L-histidine degradation into L-glutamate; L-glutamate from N-formimidoyl-L-glutamate (transferase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="19">Homooctamer, including four polyglutamate binding sites. The subunits are arranged as a tetramer of dimers, and form a planar ring-shaped structure.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
            <location evidence="2">Microtubule organizing center</location>
            <location evidence="2">Centrosome</location>
            <location evidence="2">Centriole</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Golgi apparatus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">In the C-terminal section; belongs to the cyclodeaminase/cyclohydrolase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the N-terminal section; belongs to the formiminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.5" evidence="7"/>
    <dbReference type="EC" id="4.3.1.4" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020000500">
        <property type="protein sequence ID" value="CAB3982441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAS5"/>
    <dbReference type="OrthoDB" id="48036at2759"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005814">
        <property type="term" value="C:centriole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005542">
        <property type="term" value="F:folic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030412">
        <property type="term" value="F:formimidoyltetrahydrofolate cyclodeaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030409">
        <property type="term" value="F:glutamate formimidoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:L-histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:L-histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.680:FF:000001">
        <property type="entry name" value="Formimidoyltransferase cyclodeaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.990.10:FF:000001">
        <property type="entry name" value="Formimidoyltransferase cyclodeaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.680">
        <property type="entry name" value="Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.670">
        <property type="entry name" value="Formiminotransferase, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.990.10">
        <property type="entry name" value="Formiminotransferase, N-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007044">
        <property type="entry name" value="Cyclodeamin/CycHdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013802">
        <property type="entry name" value="Formiminotransferase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037070">
        <property type="entry name" value="Formiminotransferase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004227">
        <property type="entry name" value="Formiminotransferase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012886">
        <property type="entry name" value="Formiminotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037064">
        <property type="entry name" value="Formiminotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022384">
        <property type="entry name" value="FormiminoTrfase_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036178">
        <property type="entry name" value="Formintransfe-cycloase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051623">
        <property type="entry name" value="FTCD"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02024">
        <property type="entry name" value="FtcD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12234:SF0">
        <property type="entry name" value="FORMIMIDOYLTRANSFERASE-CYCLODEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12234">
        <property type="entry name" value="FORMIMINOTRANSFERASE-CYCLODEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02971">
        <property type="entry name" value="FTCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04961">
        <property type="entry name" value="FTCD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07837">
        <property type="entry name" value="FTCD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01221">
        <property type="entry name" value="FTCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01222">
        <property type="entry name" value="FTCD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55116">
        <property type="entry name" value="Formiminotransferase domain of formiminotransferase-cyclodeaminase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101262">
        <property type="entry name" value="Methenyltetrahydrofolate cyclohydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="15" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="13" id="KW-0290">Folate-binding</keyword>
    <keyword evidence="14" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="12" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="16" id="KW-0456">Lyase</keyword>
    <keyword evidence="17" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00008297"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00012252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00012998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00017787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00025506"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00025915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00030029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="CAB3982441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="609" mass="67581" checksum="41570DDC6A3689F9" modified="2020-12-02" version="1">MFITLLYISNICTKQTNIYLLLVIYCLRRMDLSEKVVECVPNFSEGCDSTIINSIANAISETKGCVLVDVDAGSSTNRTVYTFFGTPESVVEGALNGALKASELIDMKNHIGAHPRLGALDVCPFIPIKGVTMDDCVKCAHQFSERLVKELNVPVYLYGHAAREEYRNTVPQIRSGQYEKLPEKLKDEKWKPDYGPTMFVPYWGASIVGARDFLIAYNVNIMATKEQAHRIALNIRTTGRSPTQLGLLEKIQAVGWREEKSNVSQISVNVLDYNTTAVHIVFETCVEEAKKLKLAIAGSQVVGLVPLKVMLDAADYYMAKEDLFIVDEDQKLRLVIDRLGLNSLGQFNPQEKVIEYVIGSNKNGPLASMPLCDFIHSLGSRTPSPGGGSGSAAVAAIGAALSTMVGWMTFGKKKYENLDSTMRKLIPPVYQVMVDLIPLVDADTNAFNMYMDALKLPKNTPEEKERQSQAVQAGLTASINVPLKLIKTVSRVWQSLTELARCGNVQTKSDIQVGVRCLETGVWGAYYNILINLPDIKDETYKEQVRSLKTFSASVGSDDNKTAACGLREYNYLKTISRTSTFRAKALRDPTLIFINFFNVHVARYDVIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GG31</accession>
    <name>A0A6S7GG31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Toll-receptor-related 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A042032</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the interleukin-1 receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001696">
        <property type="protein sequence ID" value="CAB3990635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GG31"/>
    <dbReference type="OrthoDB" id="5966846at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24365:SF541">
        <property type="entry name" value="PROTEIN TOLL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24365">
        <property type="entry name" value="TOLL-LIKE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13676">
        <property type="entry name" value="TIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3990635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="424" mass="48463" checksum="170A212D2E5F6EB0" modified="2020-12-02" version="1">MKFIVTFTRHVDMLNFSELVAIILIIMLADAATGSKTTSDIKLEGSISEHDVVIGSNVNLTCAAFWSPKKSCNIMWIKNSKRLDEKMKHGRLQWLLGKQISFTRRCSVAKFMIRNFSSNDAGKYECLSIDKITSFQTDSEEGSIIQINAVTCYQGFYCPKTKTKSVPKRCPTGTFSLYKNATSIKDCLPCPADKSKREHWKRRMETKIVAMFQTNCHSSSLIQGKTSNLSSGAKVAIIVLPAIATLVFVMGVLYAFRRRKAMIKYREKLLNSFKDVDYDPLKVPRSKDVFVCYSSKNREWVHEILFPKLKSQNFKVFIDFVDFEIGKTIDDNIVKGIYGSRKTLFILSKDSLKSLYARKELYHALAAGKTGHQVLVILYEKCKAPAEIAGIVYLDWTDEKNRDRFWERLYNAIRRPLPNETVHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQL8</accession>
    <name>A0A6S7GQL8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002375">
        <property type="protein sequence ID" value="CAB3994023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQL8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="504" mass="57023" checksum="77079253B02A57AB" modified="2020-12-02" version="1">MAMPSNKSPGPDKIGMRVIKDCLPIILGPLTHMINCSLMTSTFPDLWKISEVIPLLKEGDHEIASNNRPLSLLEVVSKVCEKVVLNQFSSYLKEFNRISSHQSGNRSLHSTETLNIFVTDTMLEAIDNKNLTALILLDLSKAFDSVSHSILLHKLSCIGASPEAVKWFQDYLTGRSQYVRIGSTKSSARPITHGVPQGAILSPLLFCIYINDLPGSIQSCNLDSYVDDSKLYKSFCIYDLEQTTINLEADLQIAAKWCLEHQLLINPEKTKFLLVGSRPMLQNVPTEISLTFLGKTIRPVLLAKDLGINLDSYLSYDDHISKLVSSCMRKLCQINRVKDSFDNETLKLVIETLVINKLLYCSTVWSNTSSNNINKLQSVQNFACRVISGVGKFDHITPALRELNWLPVEKLLLERDTVMAYKCFNGLAPDYLVDKFIKRSDIHDRSTRNHDLLDIPLYKSATGQRTFNYRGVKIWNDLDDKLKNITSITIFKKKLREILLKESY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWZ0</accession>
    <name>A0A6S7GWZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026023</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003211">
        <property type="protein sequence ID" value="CAB3997864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWZ0"/>
    <dbReference type="OrthoDB" id="10059408at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF31">
        <property type="entry name" value="OS01G0873500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="239"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="54252" checksum="663F52A3504902B3" modified="2020-12-02" version="1" fragment="single">MASTGYGPSRESRWSRLTFDGNESNYELWEAKFLAHMRLLKLKDTILPSEEEADATKNEECYAELIQCLDDTSLSLVMRDATDDGRKALQILRDHYANQGKPRIITLYTELTSLEKALHETVTDYLIRAEKAITALKNAKETLSDGLIIAMILKGLPDSYKPFSIHVTQSASEITFAKFKSMLRSFEETEKLNTKPKIDQVMKAEFPSQTMTCYGCGKRGHLVRECPAKSEKKWCNYHKSTTHSDSTCRSQQKSKDHAEQVSEKENTSKDEHSFAFKVNDEATGKINRMGMLVDTGATSHIVTTDILKQIDMTFKPSKHYIELADGTRASNIALKRGDAEVFLKDTNGKCVKTVLKNALYIPSYPQDIFSVKTATSNGAELRFAQDTGELTLEDGTIVEIEEHGRLYYLTSIDSHENDSVSEVDKVNLSYDINTWHEILGHCNFEDIIKLQGVVKGMKFSAGVQFLLNREISSRHHSLWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXY1</accession>
    <name>A0A6S7GXY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003081</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002983">
        <property type="protein sequence ID" value="CAB3996943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXY1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15203" checksum="7BF1B360CF4ED1D2" modified="2020-12-02" version="1" fragment="single">PLIITGLKCNRYIADWDMNITATIRAFQGEGLGLVTVIIRAFQGDRLCLYNQSFSRRGPGVTATIRAFQEEGLGLPCHSQLITHPQFTPDLRGPSDTLDFAVILNLLPSFCGGVLGVNFGKNIGETLPIALKNEELEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZT7</accession>
    <name>A0A6S7GZT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014207</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003459">
        <property type="protein sequence ID" value="CAB3998875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZT7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12825" checksum="487FACB4DB7A0276" modified="2020-12-02" version="1">MAQQKETPKKIDVETQTIEDTVSKPALNELPFDEILKKIDEELRKIARRDMNSVLHRKDFDAMSSFSLENILKELRTMCLVTFTSLSQMLDLDCGNEKSCSSLPYLRRVDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HG30</accession>
    <name>A0A6S7HG30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004652</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004278">
        <property type="protein sequence ID" value="CAB4002173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HG30"/>
    <dbReference type="OrthoDB" id="5959361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55464">
        <property type="entry name" value="Origin of replication-binding domain, RBD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="130"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20636" checksum="5CAC742EFDD4B7DE" modified="2020-12-02" version="1">MSSSRTQAVQSKPPKQRSIYLITYSQCGNSGLSRQAFAQIILDAWNDPCLSKIIQWVVSEEMHQDGGKHFHMALKLDKKTRWLVVRNFLDMRHGIKVNFSDKHDNYFSAYKYVVKYDADYVLSDNHPDLTNATAPRTTNASQKPKGTAKKAGAATKKKKKRIAVYNVVRIIQTKGIKTCWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HL92</accession>
    <name>A0A6S7HL92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002763">
        <property type="protein sequence ID" value="CAB3995931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HL92"/>
    <dbReference type="OrthoDB" id="6343797at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="13357" checksum="018721255AA2B6F3" modified="2020-12-02" version="1">MSSALLKFLREFHTRFGQLPEEIQFDDGKEFYKVGVLTLLRKRNINHFSTMSDKKAAIVERFNRKLKTAMWKYLDAKGTTRWVDVLDDLVSNHNELRHQTQLDSVEIKGCQQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTG9</accession>
    <name>A0A6S7HTG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005742</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005553">
        <property type="protein sequence ID" value="CAB4006610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTG9"/>
    <dbReference type="OrthoDB" id="5989769at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="133"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="165"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20600" checksum="6610DCDA212A8235" modified="2020-12-02" version="1">MFLDDFVESFNLTICLWPIPAISTVDQPTDWHEEVRRKDDNEKSKAKAYTDKKRHAAERKLIVGDKVLVKQKRKNKYSTKFCKDPMTITKINGTQIVLTDLHGKQHRRNSSHVKKYWTTSEPNNVEDEDFVAESQPPQSTTEETPPDSNPNIPIIQPDPTPLRRSTREKTVPDRLRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTZ4</accession>
    <name>A0A6S7HTZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005810">
        <property type="protein sequence ID" value="CAB4007483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTZ4"/>
    <dbReference type="OrthoDB" id="5978439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="27101" checksum="D33F4E297D19247E" modified="2020-12-02" version="1">MVNSEAERFIAALSMLKLGSSGDDTERSAKFWNPALVAMKFSVETLWLNAVWECKSKPNYEMRDLDPILEQQASNKFELTGPLIDSYLRELGKSIFSKLGRSRNTGLMPPVKLFLPYNIFRHLCNIAVGYGGSLKNTKTQMLVTVDRFEMASKMFSPVRFGGNNFLKKRHFTKVKENGRTLLRYSGRAAIVVGKSTPLIFDYNVKQEKLTLTFYVQRYDREDFSLDLRLQAVINQGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVS2</accession>
    <name>A0A6S7HVS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009569</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006745">
        <property type="protein sequence ID" value="CAB4010315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVS2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15992" checksum="174943DB489CAD42" modified="2020-12-02" version="1">MASGNLQWAAPKPLKLDGNVSENSRKFEEHWTLFEKTELKGRSEEERCSYFLLCIGEKGREVHKTLTFATPETETNQEGVTTWKRTTNELKSAFKTYCNPRKKHYVRTTQIQHTESRRKRKHRPVCDCFAHSRSNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWH3</accession>
    <name>A0A6S7HWH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006845">
        <property type="protein sequence ID" value="CAB4010605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWH3"/>
    <dbReference type="OrthoDB" id="5947521at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="60" mass="7258" checksum="2A553867D5339035" modified="2020-12-02" version="1" fragment="single">KYQRGLSEEEIRMRRIMKQLSWYSGDLAIPRLERPDIKDHKTVDWLHVTQHSNDETTVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I093</accession>
    <name>A0A6S7I093_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">creatine kinase</fullName>
            <ecNumber evidence="2">2.7.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A074215</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7 9">Belongs to the ATP:guanido phosphotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.2" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020007039">
        <property type="protein sequence ID" value="CAB4011136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I093"/>
    <dbReference type="OrthoDB" id="430219at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004111">
        <property type="term" value="F:creatine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046314">
        <property type="term" value="P:phosphocreatine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00716">
        <property type="entry name" value="creatine_kinase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.135.10:FF:000001">
        <property type="entry name" value="Creatine kinase M-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.590.10:FF:000002">
        <property type="entry name" value="Creatine kinase S-type, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.135.10">
        <property type="entry name" value="ATP:guanido phosphotransferase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.590.10">
        <property type="entry name" value="Glutamine synthetase/guanido kinase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000749">
        <property type="entry name" value="ATP-guanido_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022415">
        <property type="entry name" value="ATP-guanido_PTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022414">
        <property type="entry name" value="ATP-guanido_PTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022413">
        <property type="entry name" value="ATP-guanido_PTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036802">
        <property type="entry name" value="ATP-guanido_PTrfase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11547">
        <property type="entry name" value="ARGININE OR CREATINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11547:SF23">
        <property type="entry name" value="CREATINE KINASE B-TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00217">
        <property type="entry name" value="ATP-gua_Ptrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02807">
        <property type="entry name" value="ATP-gua_PtransN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="Glutamine synthetase/guanido kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48034">
        <property type="entry name" value="Guanido kinase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00112">
        <property type="entry name" value="PHOSPHAGEN_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51510">
        <property type="entry name" value="PHOSPHAGEN_KINASE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51509">
        <property type="entry name" value="PHOSPHAGEN_KINASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="10" id="KW-0969">Cilium</keyword>
    <keyword evidence="10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5 8 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8 9" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="141"/>
            <end position="145"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="305"/>
            <end position="309"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="333"/>
            <end position="338"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4011136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="42084" checksum="1E5EA43BCDDDEBDF" modified="2020-12-02" version="1" fragment="single">MGCGCSKNSRARSADTAVCCCEAKNCKGRDCSNFPDLSKHNNWMAKCLTPAVYQRLCNKSTPGGYTLDECIQTGVDNPGHPFITIVGCVAGDEESYEVFAELFDPVIEKRHAGYKKTDLHKTDLDWTKIRGGDLDTNYVISCRVRTGRSIRGLALPTYCTRAERREIEKVVSDALKNLDGIYKGKYYPLKSMSEKDQEQLIADHFLFDKPVSPLLTSAGMARDWPDARGIFHNDAKNFLVWINEEDHTRVISMETSGKMKDVFQRFCEGLNKVETAIKSKGREFMWNEHLGFVLTCPSNLGTGLRAGVHIKLPLLSVHPKFSEILAKLRLQKRGTGGVDTESTDATFDISNLDRIGYSEVELVQNVIDGTTFQFLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2W8</accession>
    <name>A0A6S7I2W8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006331</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003919">
        <property type="protein sequence ID" value="CAB4000762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2W8"/>
    <dbReference type="OrthoDB" id="409273at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="29392" checksum="45236AC4D150481A" modified="2020-12-02" version="1">MAVERLSEIGHFVKQQEYQKFQAVSEFLLVLLSVLDGSCRVKSLLLELGACVSKVDPAVFYWLDENGNVYGILACHVDDCIWGGGGKPEFENVISRIRSILSAGKESNKAFKYCGIDLEYGEDGVIYLDQIDYTDLLKPVDITASRALEKDSELTECEKHSVRSKVGQLLWLAHQSRPDLLFDVTSVANNINKGTVQHVLEINKIIGKAKVTKSSLKFQNLGSKEKLKLVVFSDASLGNMPNGGSQGGYLVLLVGGIGKILTYLVEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4V6</accession>
    <name>A0A6S7I4V6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059327</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004164">
        <property type="protein sequence ID" value="CAB4001731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4V6"/>
    <dbReference type="OrthoDB" id="10057522at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="545" mass="61684" checksum="305CC429A9D60D82" modified="2020-12-02" version="1">MNWEICCLCQTDTTQETLQTPKEDGLVSLERDLKDFHDINANSLPSGINVTISQLNDGSGIAATLKSHKARYHKSCRRHCSSARVKRAREKQKKDISDLNSPKRLRSSGQFRLVINDIFCVICEGEDQANLDNVVTDVVDANLKSWAKTNKNFSLLGRLVANVADAHAAGTYYHHKCYVRLRDSDRATERRELTGPVPPPFDPIICAQIVAMIEHSDSTSFKLSELREMYEKLMSDKGRPLQDKREPHSTRFKDHLLDLLPEWDEFSKGDEGRKDVFLSHKFKVVEELAKTYKSQIGQEDALIFMRAAVMMHELCLQNQKPFDGSFPPNCLTACVNEEMRSFLNVVLRGPSSIRGSSKTSGDVNLKTREKIVCNISQLLIYNFTKRTHHPVKTEAVRHNKERETPFPLYHGLKLHGNARSKKQIEIDHEQGVSVSYNRIMEVKRSVARVVCARHTQDGVVLPTNSRLNVFATHDVDNIDSKAKGNFSQDEFHGYALSVTNHLSHNNPGVKRPPIKLDPSDKSTPKLPDSYMIQPPVELAQPNQPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I584</accession>
    <name>A0A6S7I584_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008076">
        <property type="protein sequence ID" value="CAB4013925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I584"/>
    <dbReference type="OrthoDB" id="5966446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24204" checksum="801E4A05C6F59571" modified="2020-12-02" version="1">MADSEGEIEDDARLLEGDEATHAQESPSGDRHESQSNMEKFEELSGNIKDGFSSLGELLTDLMQQKSRGKRSRQKSRSSSPDSADGDQTTSPKRARLEDEQNDDVAVLLGESQPHGGNSGNDDEKEFGVILDSVVQELDEEQLGPAVSEKLAQVINKTLRSKLSEEKLKEKQNAYPRPQNCESLETTRVNPEIWAQLQSSTRSRDIRLQKVQKGYCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDS7</accession>
    <name>A0A6S7IDS7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Calcium-channel protein CCH1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A079398</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008602">
        <property type="protein sequence ID" value="CAB4015149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDS7"/>
    <dbReference type="OrthoDB" id="412748at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001518">
        <property type="term" value="C:voltage-gated sodium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022843">
        <property type="term" value="F:voltage-gated monoatomic cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005248">
        <property type="term" value="F:voltage-gated sodium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0086010">
        <property type="term" value="P:membrane depolarization during action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019228">
        <property type="term" value="P:neuronal action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13433">
        <property type="entry name" value="Na_channel_gate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000093">
        <property type="entry name" value="Calcium channel subunit Cch1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000059">
        <property type="entry name" value="Sodium channel protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000009">
        <property type="entry name" value="Voltage-dependent T-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031649">
        <property type="entry name" value="GPHH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044564">
        <property type="entry name" value="Na_chnl_inactivation_gate"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003915">
        <property type="entry name" value="PKD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043203">
        <property type="entry name" value="VGCC_Ca_Na"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10037:SF62">
        <property type="entry name" value="SODIUM CHANNEL PROTEIN 60E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10037">
        <property type="entry name" value="VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16905">
        <property type="entry name" value="GPHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01433">
        <property type="entry name" value="POLYCYSTIN2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="12" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="13 18" id="KW-0407">Ion channel</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 17" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="7" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="100"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="296"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="385"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="415"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="446"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="499"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="600"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="818"/>
            <end position="843"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="16">
        <location>
            <begin position="828"/>
            <end position="842"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00061395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00067459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB4015149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="880" mass="100556" checksum="9E9D3B421C56C366" modified="2020-12-02" version="1">MPNHTLTSWQIPHYTVYLLAPYIMNVFISGENSATPQDNCSETSSRLEKEWSEFRARISQIVQSKFFEWFILFVITISSICLAFEDIYLRDHKDLQHILYCLDIAFVVIFSLEFLLKLIGLGFIRYFSNGWNYLDLGIVIISILSLTVRSDLAAFRSLRTLRALRPLRAISRFEGLKIVIGSLFSAIPGISNVLLVGLLSWLIFSIMGVQLFGGKFYKCIDSSYQVLPVAQVPNKTTCLEKEFRWENSHMNYDNVLNGLVALTQVATLEGWMEIMRDAVDATGVDKQPIPENNLSAYLYFVVFIILGSFFVLNLIVGVIIDKFSRMKQLYEDTGSTGIYLSTQQIDWLNTLKKAASKKPSRTAERPKNYFRGIIFDIVTNNYFEITIIFIIGLNMGTMMLQHYGQSQHMDDVLDFLNYFFTGIFIGEAIARITALGTFYFRVGWNVFDFLVVVLSVVGMLLEALKKFDFVKLSLLRGIRAFRVTRLLRFIKVAKGIRKLTFAFVLSLPALFNICCLLVLILSIYAIVGMTSFGFVKKTGALNDVVNFETFVRSFVLLFRLMTSAGWNEVLDSLMIQSPDCDPYYLGLSNGNCGRPLFAQFYFVSFVIITHIILVNMYIAIILENFNRIYKKAKVGITDDDLDMYYSKWALYDPKATEYIHFEQLSEFVDKLNPPLRVPKSGTGGVETMDISLRSGDRVHCLDLLHALVKHLVLKEFPKGGGGYSVVMERLEERFMKAFPRRNLYAPVSTVKQKTREIKAALIIQRAVKRFKASKERARIAQNETETQRFGQIRTETHSFVQNERESSNCFQNKTETRTANLNESSVAVHRRPVHERPLKRNSSHTLTIPPIRTVQVESLARTHKVSEDLSLNSVSTDNSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJW6</accession>
    <name>A0A6S7IJW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC108916950</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009802">
        <property type="protein sequence ID" value="CAB4017987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJW6"/>
    <dbReference type="OrthoDB" id="5984255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004210">
        <property type="entry name" value="BESS_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02944">
        <property type="entry name" value="BESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="37"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="289" mass="33066" checksum="9ED5FA2E3E974C3C" modified="2020-12-02" version="1">MADSQRSDVFVLESESQLFNSIISQELNERDSDDEQSSLQSQQMMQGDQTMNTSASSEAQDVNSIDVLEVIVNEVQAHPILWSRQNPDYKRGASEVKVEEFIRWFQEMPRQEERFRKNGSGYSKQPTCRFYNQLLFLRDSISNRTTQSNVQVRSISLAIPSPSEKALPEPSTHAESNPGNKASQQNQQHAVPPTAQPPAKQKFQFPQATVIPKKKKKVVLDPVEEYLIKSIEKNEEENKLVPAKKEDADEQFCQSITHTLRRLGEQSVKKNQLAKIKIQQLLFDIEFDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IX35</accession>
    <name>A0A6S7IX35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049987</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011941">
        <property type="protein sequence ID" value="CAB4022366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IX35"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="458" mass="50572" checksum="20C4E4B9FBF52836" modified="2020-12-02" version="1" fragment="single">MLLDAYQSQIRLCVSVDTRTEPEAIPTTPLGSIHESDDFLSPVLTSTPGTQAMQAGTSSFPSPIIASHTESLPCSSRRNLLPDSSPLSFKSTRSAIMEDVTFTASEGDKSCDDDTTLTASTVLGMNESVELPLLEVSIEDDVFNTSIYGHNDEVLADDGTEASDSTDKIPVMTVPPDEAIQMEKCIVFTDTLMSLLKELHGRICKRHGCDHVLDYRKTDVGTCLVVSWGCSAGHKGSRWAAQPSCDCDKIRAGNLMLASALLLSGNSYTKVGLMFRFCNLQYFSKTLCTQYQSLYISPAVNEFWEQHKQELWAEKAGKDVVLSGDGRNDSPGHSAQYCTYSLADMEDHTILQMNIMDVREAAGKSNNMERIGFERGMDKLLTSQMSVKEVVTDEKADKYKDMKHQNDVWHGGKSLAKKINASSKTKANEDLALWAPSSVCNHFWYCSKQCDKDVKNIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYB1</accession>
    <name>A0A6S7IYB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sec1 family domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034556</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005534">
        <property type="protein sequence ID" value="CAB4006538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYB1"/>
    <dbReference type="OrthoDB" id="6493431at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="185"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="190"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="28675" checksum="D120842EE2AB71EE" modified="2020-12-02" version="1">MCRSSGKLDAIETKDSKPEETGNDFLFLDTVTAAVDETKTQRIEIVKTLFARHGVPEVVKSDTGPQYSAEFAKTWGFKHVTSSPLYPQSNGLVERTVRTAKSIVAKARRDYQDPNLAILEHRNTPINGVGSLSRLSIGRRLWSTRGKIWKPAIITSKAETPRSFNIMTEDGAQYRRNRIHLRKAYDRVSRSSSPEKSTEGPSKSRLTHRSGMNNYNIKKQENKETLSSTGETASPVKTRLGRMIRKPTQYKDYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZT1</accession>
    <name>A0A6S7IZT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005630">
        <property type="protein sequence ID" value="CAB4006868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IZT1"/>
    <dbReference type="OrthoDB" id="5981118at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004242">
        <property type="entry name" value="Transposase_21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579:SF2">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579">
        <property type="entry name" value="F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02992">
        <property type="entry name" value="Transposase_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="649" mass="74602" checksum="16E6151D3054AC1B" modified="2020-12-02" version="1">MADIYDGRLWKDFMTINGKDFLKAPRNYGLQLNFDFFQPMKRRKDYSVGVFYLVVLNLPRAERYKWKNVIVIGIVPSFDKEPKNLNPFLEPAVKELQCLWKGMKLKSSKCRFPITFRAAIMSVSADIPAMRKLGGFKSHAALHGCSRCLKSFPRSFGTKPDYSGFCRMQWTPRTNAQHRRKAQCLENIRPSTKKDEFGKKHGITHYSVLLDLEYIDAIRFFTIDPMHNLFLGTAKKMFSLWIETHLLSIKNLEELEKKIQAMDIPNSVGRLPAKISSNYGSYTAEQWKNWTLIYSLVCLKNILPEAHLSCWQTFVLACTYICKPVISVAELEVFDGLFVKFCKEVEALYGKEVITPNMHLHCHLRDVLLDHGPSASFWCFSFERYNGILGSTPTNKRSVELQLMRRFQLSHFLEARDYPNMFQQDLLPLCSQTEKDKSVGWIETTDWQTRMQVDKLAFSRPLPQGKLWGNLSGIFTQENYKLSSLDCDDAALLVEVYKVLYPDLSINANHIGLLIKKFGSVVIGSTKFGSKLEPRSIRSARILASWTKSDGSINKETFCLSPGTVSYYFKHTLDIESEKVTHVFASVKWHKEVPNRDKIGNPVQVWSPKYQEPGCSVFMPVQRTYSHFATSKYGNSRIAVCALLRKSFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3J1</accession>
    <name>A0A6S7J3J1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012570">
        <property type="protein sequence ID" value="CAB4023580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3J1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13849" checksum="9961F22E1ACCB9C5" modified="2020-12-02" version="1">MKFKKLVEETQKSLESVSRSKHCLEISPSIKQPSTSRACTSTDGSLLSSNRRRNLDFTSLFSSDDDASQSNDDVDDPSKPTIPLHLKQFWKWLNKSCLKLLDEMTHQSFEKGRTRGCHKTTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J4A6</accession>
    <name>A0A6S7J4A6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052909</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014419">
        <property type="protein sequence ID" value="CAB4026815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J4A6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.720.30">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036361">
        <property type="entry name" value="SAP_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15351" checksum="B11F7CBA5682CA76" modified="2020-12-02" version="1" fragment="single">QGVEKNNDVARSIVLRKSNKWDSTGDVLRFESRQWLLKNREREPREYNKRNLEYWNNEIKKKHCGPAQQCRAQPQDIGENTCNPSTSGPIQTPPLNIAKMTVPQLKHQLKQKGIKGISKKSKQELVDMLTSII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J773</accession>
    <name>A0A6S7J773_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044857</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013274">
        <property type="protein sequence ID" value="CAB4024860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J773"/>
    <dbReference type="OrthoDB" id="6019648at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF8">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="28153" checksum="559F25270922DFCE" modified="2020-12-02" version="1">MDPNNMPPRGPNKGASAGTSIGLERVDEANVNTAMCVTAVTGNIPEVPVQVMKEPECTQQKKRFTQPAAIASPTKSNAHSNNVVKPLTPIFVSKLEDFLAEHPDPTLVSQLCTNLREGAHIVAPGKTQGPATVLEFMGIILDSVRMEARLPGDKIERLRVAFDIFQKRRSCTLKELQSLIGSLNFACKVIPPGRPYLQRMIELTRNVKQPHHHIKLSAGFFKDFEMWKQFIVNWNGASFFLSCMGRLGMPRAPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTZ5</accession>
    <name>A0A6S7JTZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Fibrillin-1-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A060146</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021807">
        <property type="protein sequence ID" value="CAB4036225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTZ5"/>
    <dbReference type="OrthoDB" id="19903at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000653">
        <property type="entry name" value="Putative Fibrillin-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050751">
        <property type="entry name" value="ECM_structural_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24034:SF204">
        <property type="entry name" value="ADHESION G PROTEIN-COUPLED RECEPTOR E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24034">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 5" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4036225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="17116" checksum="81324723755332C7" modified="2020-12-02" version="1">MNIPGSFTCTCNIGYSGNGVSCQDIDECVSSKDVCHNSRANCLNTPGSFTCSCTTGYSGDGVTCNDINECEVGTDNCGIEASCVNTIGSFNCICSFGYTGDGMKCTEDDCRTHGCEEFYVCRILDNQYACVCQSNYTRTNCSDEIAGRYLHISQIIVQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JWJ6</accession>
    <name>A0A6S7JWJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022884">
        <property type="protein sequence ID" value="CAB4037255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JWJ6"/>
    <dbReference type="OrthoDB" id="2123493at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="53" mass="6086" checksum="610DA86CDACB856A" modified="2020-12-02" version="1" fragment="single">MATEIKNLEAIFDRKLKPLFSKFDDLNTKVDEAMCSLSFLSAKYDELNDKAIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6F4</accession>
    <name>A0A6S7K6F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027809">
        <property type="protein sequence ID" value="CAB4041126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6F4"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="13183" checksum="ADF7337D0DA9C7B2" modified="2020-12-02" version="1" fragment="single">MDKPWMNANLKQLIKRRQKAFSPGDVFLYKLLQNKVNRERKRCRMIYYKNKVQDLQHTKPRDWCDWWREVKQFCGTSKAARRDIRSILRTNTESSDQDLANEIMKAFAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7E3</accession>
    <name>A0A6S7K7E3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009232">
        <property type="protein sequence ID" value="CAB4016718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7E3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14494" checksum="79369B973434F02E" modified="2020-12-02" version="1">MVSKARLGKFYLLPKIHKRLENVPGRPVISNCENPEEPESDESEVQVSDSVEDTFPTENNMAVEESTDNHPNLTLLNGASILCTTEHDNNVTEKLKMVESQMNQKIERLAYEIQKLKDNKDATTLHAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KH82</accession>
    <name>A0A6S7KH82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021219</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014878">
        <property type="protein sequence ID" value="CAB4027563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KH82"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="21662" checksum="3DC1CB806F574A65" modified="2020-12-02" version="1">MAKTLFLLVCLVIVLARTSKDERVDFQRGDKREDDAVGLPEFYLSLLPDGERLAYGNNPDYQYRRMSFEPRYYIGKNLLRFHLSYTSADFLLELAVTVDGKKQQLYVDTDLHLRVADKDGKNSEYEEVALHYNPNKRSVFVTICNPDFPFEPCVWRRMWRGDGTELQSFQRIVAIITLWRELHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KHJ6</accession>
    <name>A0A6S7KHJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038989">
        <property type="protein sequence ID" value="CAB4045356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KHJ6"/>
    <dbReference type="OrthoDB" id="5987571at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12606" checksum="815C106D4F4EA4E1" modified="2020-12-02" version="1">MLDKSLPKRTVRAHPSDKPWMTPRIKHEIKARQKAFKSGDITRYKLLCDKVTSLVSNSKKNYYQLKAETNPAKWYKTIFELAAANDCNPQPPADDAADLAERLQQSFTKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLU4</accession>
    <name>A0A6S7KLU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070474</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043220">
        <property type="protein sequence ID" value="CAB4045907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLU4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="30142" checksum="3277A9F9F3A7245E" modified="2020-12-02" version="1" fragment="single">VGGSNMSLLCPTRSSVLLLWKPSLTMMLPLLGTNRVEVARPRNPKFLRAQLPLTSRVRLSVARNKSCSARLIRLVHPACGRTPVCEMWQDCKVRCRLKHTAALTIPCVLQVRFAGSDEPPSMPSSPSGSLPRVTNFRLPRNCKVPCASGLPEFQSSEMVPMTEAVPSLSSLSGLLWSSGSLWSSRFSWSSLATLPMLFLADSLPWLYALGIEFACNLSCLEILTTQLVQIGHYCLHDVGAVTNWITAIPVGSSSLLPPVGASPPPPLWHEVKIFLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTF4</accession>
    <name>A0A6S7LTF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Neurogenic locus notch homolog 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030237">
        <property type="protein sequence ID" value="CAB4042499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTF4"/>
    <dbReference type="OrthoDB" id="10615135at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12359" checksum="7278631383656F4E" modified="2020-12-02" version="1" fragment="single">GEILRNKVPLKLRKKVVVPQFFWKAVCDPVAKQSIVFVAKNPSGVEGTTKQRGCSIAGGVIRMTPVNGIINCYSLDGLKRRKEARYFKLPSFGDACNPSQRSRFLDQYLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LU89</accession>
    <name>A0A6S7LU89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050273</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036642">
        <property type="protein sequence ID" value="CAB4044872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LU89"/>
    <dbReference type="OrthoDB" id="6782434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="16580" checksum="76192A7D209A14CD" modified="2020-12-02" version="1" fragment="single">MAETSRDCGRKKAKVDGSLDGSSASSTKFDGAARFKSKFQPSWSKKWPCIIAVPRSPSEFRCTVCDKVCSCAHQGESDVTRHIEGEKQQKNVTTAEIKVATLLVENNIPLVFADTLSPMFKEIFPDSNIAKNYHSARMKTTCILNGAIAPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6M2</accession>
    <name>A0A7D9D6M2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023423</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000100">
        <property type="protein sequence ID" value="CAB3978260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6M2"/>
    <dbReference type="OrthoDB" id="5406275at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33488:SF2">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33488">
        <property type="entry name" value="ZGC:162509"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14913" checksum="CBDE3170E1D3A8B2" modified="2020-12-02" version="1">MQSLEYGNANVENVEIRKCKIYFGDVTDVGTFLLKASQVKRLKSTNIVKVLKNGVNGDFSLQDKENPIMFKHLMYPNSFRACLVQISNEGWKAFNLAHTNMDQIRLHSSNVDTHVRTAVKFLLKDSKRQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D7S6</accession>
    <name>A0A7D9D7S6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057462</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000176">
        <property type="protein sequence ID" value="CAB3979198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D7S6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="110"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="129"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25212" checksum="15711F787309DC3F" modified="2020-12-02" version="1">MVNFDSLVIKADVCEDRSTRDSDPSEQEPRRAACNNSRRGIRRAPARKTNERRHDSGHNIKSPLKKAPHPLGCLSPNKEFSTDAGEPSQQYLQGHGDKLHDNDSEQGEYSRLTTQTSSETSSLTSLHSSLDEHHKENNTRDQMSEVASSHELSVKSENLIEVKDVSGVKRKLSESDMSDATSTSGHVKKRKNFLTLKLRCFVYWKAYGLSPCFFPQYVQPFDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAY8</accession>
    <name>A0A7D9DAY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034974</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000384">
        <property type="protein sequence ID" value="CAB3981393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAY8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="18072" checksum="2B5C39796C76848A" modified="2020-12-02" version="1">MAFKYHHEAAAQLYDKTCTTILEDGSKCLQLHCPHAEDTGVCEAGNDDELFNDRFCTECRMSIYWYLRGKTKEMRLEKVEKAKTEGKDYFIATGYQSDVGWQYEHVTTRQLFHDPQEPKTEEIIASVGARWLEREKNKKPGEKLQTTLTSFFTMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DDA7</accession>
    <name>A0A7D9DDA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048534</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000476">
        <property type="protein sequence ID" value="CAB3982191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DDA7"/>
    <dbReference type="OrthoDB" id="5971203at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="450" mass="50087" checksum="86D456B29195400B" modified="2020-12-02" version="1">MAVITFTLIVVSFWAVKTTKANSTYVDLALNKDPINPGSCDTQSHGQIKLIKDRLGDERLVVCSENSDSKSSWKFLDGRSTIGEYFDPAYDCSDVVDRVPAAKSGIYWIKNEAVIKVVKAWCDVTTDGGGYLLVAKKDDPVTWTVPSSNETVYPQGNPHWSSIFGDMKMIDIRIQISTTSRFEDTKADWSFRLANKRPLGKLLVRNYGGCTEHNPGIGDISYVKDLLLGKTVNTQFRCSLFSAHLSEEIGWGMMNRCLKMPCPNGFAIIQYGSSVKIKLDDHGSFSYSAYKNASTSGILYSSTSFVGCSDGKCCACYGPRRGTKNYCLKNCTAINGGTVTKNAHTWIWIRSSVPKRAWRKCIEYIKTDSNGIKHTYRINEDTGIEEKGSCAYSEEVRKSGAVLVAPNEMAVKKIHSAPGLLLYRSKDKKLFVHGEKEWNELAMENEVSNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DG64</accession>
    <name>A0A7D9DG64_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000807">
        <property type="protein sequence ID" value="CAB3984956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DG64"/>
    <dbReference type="OrthoDB" id="6345137at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="entry name" value="Chloramphenicol acetyltransferase-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.30">
        <property type="entry name" value="Nonribosomal peptide synthetase, condensation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052058">
        <property type="entry name" value="Alcohol_O-acetyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010828">
        <property type="entry name" value="Atf2/Sli1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28037">
        <property type="entry name" value="ALCOHOL O-ACETYLTRANSFERASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28037:SF1">
        <property type="entry name" value="ALCOHOL O-ACETYLTRANSFERASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07247">
        <property type="entry name" value="AATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52777">
        <property type="entry name" value="CoA-dependent acyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="518" mass="59108" checksum="0BA35CCF0EDE7860" modified="2020-12-02" version="1">MALLSDVSMISVSWVKILLTAACIFLVYKIVKYFTGEVREIPPNTTNRRQLHHNEQVLDILSMEKSGSGNICLGISITSKQSLVHEHVRDALVLLAKRQPMLRAVIATMAGGNKYFEIKEINEVIAMFDITISYVNASDWKDVWFEYTAKQRANGLLWRVVILQEEFMPDTEDCVNTLMFNFSHVCIDGVSSVKFCKQFLNNMNELANGTGWVDQQISSLDLMPPFHEIVTRGRMWHSLFNFMLAYCGLRPILKFCVQRLLGRFIEKKPNNPYHEQFPPNLLVPNSLIPSRLNVKIFTGDETKNIIQACKANNCTVTGAITAAAHLAFCELIQDDKSKNMKFESLFAINGQRFCNPKPHDDYLGYFVYVNQDFYMKYVAGGGVDFWKLAQETTQQIKEFVGKEAYVVEATLISAIIEPRDLVKLFINDKLFPKSGCNFISSFGSFHLGEQQHDTYKLHECIINTLVHNMNCTFFHFNYTINGKMTWQIASNVTVDSNHAEKFSNLCFNRFSEMGLGVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DN66</accession>
    <name>A0A7D9DN66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001373">
        <property type="protein sequence ID" value="CAB3988746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DN66"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000571">
        <property type="entry name" value="Znf_CCCH"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50103">
        <property type="entry name" value="ZF_C3H1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="306"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="306"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="428" mass="48526" checksum="1A54E325A1C5A7F8" modified="2020-12-02" version="1">MNYLNGLSYDSGTYVWLKTFEELERFVLEALNLKGKWKSPGGDVKVFKSEGEGEYMIKWRGPRSKKLVIQSDDAEENLKLKLESLINRDPKDVNPSCEASTKEVCSSVNELTEPSVSQFDGLKADIATLVDITSDLITEINSMRSKQKDFESVIRKQDSEICRLSEANLLLASSLRSLGNSTFKVMNINPMTNSPTNSMRNTTFNDPTTTDKDPLIDPNIYTSHTIGPTLFNEFNIYDEFRNIASDRPSVLNSDLNQSTEDIINISHNETDIHNESVLIVKDQPSVSNTDLVKNCTLTEATNLNKASKTKSTTGKFNTSTSRLGNGRFNRMTPKRPKHLTPCPFLRKRKFCKKGNNCDFLHQKPQFYNNIQRPSYKIMDKAASSPSFHYSPFPVNPYYFPPFRSPIYHPTSQPFPYPPSLRSVQTTGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DQK8</accession>
    <name>A0A7D9DQK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A048584</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AP-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001672">
        <property type="protein sequence ID" value="CAB3990507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DQK8"/>
    <dbReference type="OrthoDB" id="10343119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042127">
        <property type="term" value="P:regulation of cell population proliferation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004979">
        <property type="entry name" value="TF_AP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013854">
        <property type="entry name" value="TF_AP2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10812">
        <property type="entry name" value="TRANSCRIPTION FACTOR AP-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10812:SF16">
        <property type="entry name" value="TRANSCRIPTION FACTOR AP-2 C-TERMINAL DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03299">
        <property type="entry name" value="TF_AP-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="209"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="46"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="217"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3990507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="34535" checksum="3094F52F41E559D0" modified="2020-12-02" version="1">MASCTSALPENNTWKLSRKRPGNFEKLNTGKSRKTNNFARERVLHRNQTSSQSPQRPLTDITRETQALKPSDLDGNTSETARDIVAADSEGPVSVSPDGNETVTYVNNLFSPVNKLQAIPLTLDELRRRTEYPEFFGRSEMVAYLRHSKTTGNELISRYNLKAKSKHSKVNVLSRLCEREARTLANGIHQVNSEYFPTDYVADTMKAQMEQDRNEETQAEASDETESGLDDNKETINSTISMLQSLRKSLEQPDDELAKDLEVFERATHTFGCQNIVNHISFVESYLAELQKKLSKEAEPEKSVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DS11</accession>
    <name>A0A7D9DS11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028391</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001865">
        <property type="protein sequence ID" value="CAB3991518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DS11"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="445" mass="49894" checksum="2CF204B03236DFDB" modified="2020-12-02" version="1">MWQKSLGSEDNETFRAGSVNSNVMATGHDLTNSVESQQIQLEYKLSEAYFTFKEFIECSNDGKVKWLSNLNDLKAFMSALFGDVGKWSSPGGSAKSYRNDLISINWYTHKKALIFHDRLGIVLKNKLIDLSVNKISDPDEYNQLNDPEVQAEFAIIKNQLGEVVQQVDRLVNTNENNNTNNNNIAESIVRTANENNSLINTIETLCKGLKTMIALCNANFINHSDQPSVSPISTLDQTNITPSATEPNQQQLHQILNPSAVCNFQDKSCIESFITVKEASITSEALSLDNTLLNSYPNVISISDDQQAGLSSPNGNSTTVEEIVTGINQNYNPSTMLPSFDDQLKEYRTKHSHTDRMIVVHNNSGITHQKPTRKSTRNRKTPDLVIKSKRCNYIPQPISHTDTSAYNPKIFRKNCSSNRPPDWGNYLILVNKLTQKTELSQSTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DX10</accession>
    <name>A0A7D9DX10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087555</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002800">
        <property type="protein sequence ID" value="CAB3996105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DX10"/>
    <dbReference type="OrthoDB" id="10065368at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="75" mass="8482" checksum="BCF69AEDB71973F7" modified="2020-12-02" version="1">MKTSMLRREFKIQGQIGEPGHKDKQAYQSLISQIEIGLQKGYTEEEITDAVATAVQAGLQLRSYFERINGLTLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E4E5</accession>
    <name>A0A7D9E4E5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CxC5 like cysteine cluster associated with KDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003950">
        <property type="protein sequence ID" value="CAB4000878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E4E5"/>
    <dbReference type="OrthoDB" id="10011386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041539">
        <property type="entry name" value="CxC5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18718">
        <property type="entry name" value="CxC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxC5 like cysteine cluster associated with KDZ" evidence="1">
        <location>
            <begin position="108"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="501" mass="57776" checksum="F9409F05BB32BC4E" modified="2020-12-02" version="1">MCALVTKIDELNAFIFGTKHFREGTPSRWELIAEFVKSQTNNPGEDIPTVCLGERESVTKKYVDLKKKEDCRMMSTFLAKNYPFLLSNEFNVSRLNVSGRTANKTVILLPPVLNCCGKRTKMDSRPSFPFVYSVNGTYVGALFHGQCTGCKTTFYPSYKTMDNKRVYYNPCNESMQYFQVTSQTVFDKQLLEDISNNIWVSGCTFQSRAKVYNANFAQKNNQRLTDMKEFARTKDAEWLLNEDRVNDAWFMWIVVNYFHEKGELERTHLDVKYDEKSKHLNTEELCELVWKDICCSRKKWVRHKCKTKGCAEGYVTVDGNEYLKRAKCALPKEKVRLRRDLPEVFRCCTNSPICGGKSEAPSKFCRVHATHESEEVCDQVDMPIEFNSAAERDSCVVEENDERDEGCKKKENISLFFETTAGMLALIRPCGIVVNMTEMFTCESLTQVFLFLLRTFCDNTEDFERLKFVGYDRACGLVPFLKNQRRNGSAGAKILLENVKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E7T0</accession>
    <name>A0A7D9E7T0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059222</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004697">
        <property type="protein sequence ID" value="CAB4003689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E7T0"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="111"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="259"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="277"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="34763" checksum="07F7217CB2759991" modified="2020-12-02" version="1">MERWTLTLHAIISPQRRDFMLQDTKHDHAFILGLGFCKKFKLVTISPVCVQQHTISVEPNKVEAVHITSESDVNYNELRKKWKEHIPLGKKTDNPLEDLKKIFPETFDRQVDTRSLNKYLIRNVHYTASWEDAQHSFNNGQYFSTLDAKSWYWTKQLDKQSQLLTAFNTPFKKYCFLRLPFGLSASSEIFCEQMDRVLCGILGTFPCADDVKVQGSTEERHDIHLLETVEKACQAGLKFNPEKCVIKKEEIEYFGRVISPQGPRGTMPQESQEHSVTRSSNGQARATKSAGNWELYGYIYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E7V4</accession>
    <name>A0A7D9E7V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A072942</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004568">
        <property type="protein sequence ID" value="CAB4003218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E7V4"/>
    <dbReference type="OrthoDB" id="6159421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="2">
        <location>
            <begin position="577"/>
            <end position="650"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="703" mass="80282" checksum="4BF3154FEE2D131C" modified="2020-12-02" version="1">MKRVSSATINDIDTSSESESDGSESVEKQREKTKQNPAKKKKYVQKFLASWLTDVQFKDWLEKRGEVPYCKYCQCSLSCAKTALVRHKENKKHRSLCGIKEKSQSITSMLHSQSKPARIEIKICSFIAEKNLPISIVEDLVPFLKNLFPSDEALKEVKLGKQKATNLIRQVLGFYSIQECVTKLKSNKFSLIIDETTDLSTTSQLAILGVFFNEQEFCLEIILIDLVPLPNGTANTIYNTLIGNLKEKGIPMKNIGFCADTCNVMFGIHHSVAQLLVRDYPWIIAIKCSCHLIHLCSSYASKMLPKSVEDLCRNIFSHFNMSSKRTESFKEFQQFVELKELKILRPGTTRWLSMKSCVKRILDQYTALQLYFTGEVVNDPTHTNDAILSGLNNKFIRAYLEFMDFNLGRFVSFNLLFQSEMPQLYQLKPEVEKLIKSICLDFMDVAHVRSTDAFKINPSNEEKQLPLDKVYLGILATSTLHIIREECEKDHPSISLFLSQCKDFLVEAVNQIQDRFGDCQKLDFLSFLSPSIAHNLKIPSLGGLCQKMPLLKEVADLQEVDKEWRDQSLSPNPKLNESLTALEYWKVVFQEKTATGEPAFPNLIKLVKTVLSLPYSNAAVERVFSQLKLIKTDHRASLKRESLLALLTTKMTLLKSNPPQTLRTVTFEPKKEMLTLYRNMKSDADNDQVAELRKDFIKKLNIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAC5</accession>
    <name>A0A7D9EAC5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004930">
        <property type="protein sequence ID" value="CAB4004542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAC5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7579" checksum="AC838BE317257C62" modified="2020-12-02" version="1">MALTARNFATSLYWFIKHLQATAIELYKETNVYKPIKFFSLKRLVRFGNYNSMDGENDSVLKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAZ7</accession>
    <name>A0A7D9EAZ7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Proline-rich transmembrane protein 3/4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A025371</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004826">
        <property type="protein sequence ID" value="CAB4004180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAZ7"/>
    <dbReference type="OrthoDB" id="10066605at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059081">
        <property type="entry name" value="PRRT3-4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052836">
        <property type="entry name" value="PRRT_domain-containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35578:SF6">
        <property type="entry name" value="PROLINE-RICH TRANSMEMBRANE PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35578">
        <property type="entry name" value="PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25987">
        <property type="entry name" value="PRRT3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0732">Signal</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043602144" description="Proline-rich transmembrane protein 3/4 domain-containing protein" evidence="9">
        <location>
            <begin position="25"/>
            <end position="1236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="501"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="531"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="569"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="609"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="635"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="679"/>
            <end position="709"/>
        </location>
    </feature>
    <feature type="domain" description="Proline-rich transmembrane protein 3/4" evidence="10">
        <location>
            <begin position="471"/>
            <end position="744"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="45"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="800"/>
            <end position="834"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="868"/>
            <end position="891"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="911"/>
            <end position="961"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="979"/>
            <end position="1001"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1080"/>
            <end position="1099"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1213"/>
            <end position="1236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="52"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="178"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="328"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="388"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="405"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="466"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="820"/>
            <end position="830"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="872"/>
            <end position="889"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="911"/>
            <end position="932"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="943"/>
            <end position="958"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="979"/>
            <end position="994"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1082"/>
            <end position="1097"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1213"/>
            <end position="1226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF25987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4004180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1236" mass="134462" checksum="B316402AEEFAC916" modified="2020-12-02" version="1">MNNTSTFLPLALVLTLGFVVYSESNPYKSIQINEKAKIYLRIRRTVNESESESTYEPSSESESTSEPSPESDSTSEPSPESESTTEPSPESDSPSEPSPESDSTSEPIPESESTSEPSPETESTSEPSPETESTSEPSSESESTSEPNPESDSTSEPSSESESTSEPSPESDRPSEPSPESDSTSEPNPESESTSEPNPESESTSEPNPESESTSEPSPESESTSELIPESESTSEPSPETESTSEPSPETESTSEPSSESESTSEPNPESDSTSEPSPESESTSEPSPESDSTSEPSPESDSTSEPNPESESTSEPSPESDRPSEPSPESDSTSEPNPESESTSEPIPESESTSESIPESESTSEPSPESESTSEPSPESDSTSEPSPERDSTSEPSPERDGTSEPSPESESTSEPSPESESTSEPSPESDSTSEPNPESESTSEPSPERESTSEPTPESDGKSPAQSEPEPQSETWPEPGPEWEKAYKLWQSAWPAHTYLFAIIFLLMAIYSGYYIVVNVKDGLGKKYLSISLNVMMCVLSITRSFVLFLDPYHQGTLIENKLVLQLMWSIGTPCLLASDSLCILALAESASVNLIHQRFQRLSNILIVIFLHFVLVIATDIVVSAHSSAKVMILYCQVFSIIWGTLLGIWYSTLAHKINHVLFKGAGRRKSRGDRIYLLLIYLSSVANLFTCVLILYSAVGVFGIYSEVEFVDAWPWYSLQTGMRVSEVIAAVLVFTVSAKRNRIKNKVHNVIVCGESQVVKETSDASSTAPTVINLYPAARNRRMSMFSAVHQSKISAHDNPGVDQKLDSPSGLQPSNKNKNNPSPRGRRMSLFSELHESKLSASRVGAIPQRNQLRNKFSALDQSLDGGNSNVQSTNDNENTSGRGRRMSMFSQLQQIKLSANANNSIPSSLRSNGTSPSAPNQSNKPPVLGRKRTPPSLSNQPEVGNQSMPSNRGRRMSMFSQLQELKMSANGNMSLPSAHGSNSSIPNEKDANTKTSSIFSGLQQFVASHKRKANKSDKCGENTKHSNFFSKFFHTKVAPINSASPNEGTRLNKITALCRSVETASPEVHVNDTPCVNKNETSVHVTDTPNSHENKTIGHAIDMPDSHDHVTDTPNAHGNMTDVHFNDMPNARGSRNNIEWRRSTGSRASLFAGLRKANTKMDEMKIIEDDEGEVEEQCIIFNRRKSSRTCAIDIDDDMCNDNAIPMQNMSSDPTSISKQSDHLTQVDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBC6</accession>
    <name>A0A7D9EBC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005243">
        <property type="protein sequence ID" value="CAB4005590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBC6"/>
    <dbReference type="OrthoDB" id="10471466at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="95" mass="10880" checksum="768FBBEBA57EE8DF" modified="2020-12-02" version="1">MQDENLSESVDVKGPPMKRMSSGYNIFTSKMLSSDACKEIDSKAEKMSYVASKWISLRDSECVMWKNEAKKLQRIKPSMLTEEDKKKQIAKGKKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESW7</accession>
    <name>A0A7D9ESW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056923</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009592">
        <property type="protein sequence ID" value="CAB4017545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESW7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309">
        <property type="entry name" value="KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309:SF1">
        <property type="entry name" value="MYB_SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="208"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="208"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="33626" checksum="1C558A1314302D5F" modified="2020-12-02" version="1">MRVRSCSANLIYDDAVLQFSRRRRFSTKIRTKMEKNTISAKELEEKEGSKSGVCFIMKWTNEHDVEFCKEVITSKLFETKKRSAERAQVEQRSVRDRLKKLIKQFRKKENDERRASGISPELTELDTLLEEISEKEEASETLAADMGEREKRRLEEDHMAGQEMRKRAMETLSETKKRNTKIDQDSPKRKVRKGGNTALAFLAEKAEKETKLKEESNRLERERQEMEKEKTDNFMQQQNDMLTDILEMQRQQNNQVQASQMVLMQQQQQQGQALIALLSKIVDKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8J1</accession>
    <name>A0A7D9H8J1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Neurogenic locus notch homolog 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A061172</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000098">
        <property type="protein sequence ID" value="CAB3978249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8J1"/>
    <dbReference type="OrthoDB" id="430340at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120025">
        <property type="term" value="C:plasma membrane bounded cell projection"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005112">
        <property type="term" value="F:Notch binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042063">
        <property type="term" value="P:gliogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048666">
        <property type="term" value="P:neuron development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007219">
        <property type="term" value="P:Notch signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000185">
        <property type="entry name" value="basement membrane-specific heparan sulfate proteoglycan core protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000012">
        <property type="entry name" value="Delta-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000230">
        <property type="entry name" value="Delta-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000247">
        <property type="entry name" value="Delta/notch like EGF repeat containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000425">
        <property type="entry name" value="Eyes shut homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000066">
        <property type="entry name" value="FAT atypical cadherin 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000173">
        <property type="entry name" value="Neurogenic locus notch protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000095">
        <property type="entry name" value="Notch, isoform B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000063">
        <property type="entry name" value="Slit guidance ligand 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013032">
        <property type="entry name" value="EGF-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12916">
        <property type="entry name" value="CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12916:SF13">
        <property type="entry name" value="SUSHI, VON WILLEBRAND FACTOR TYPE A, EGF AND PENTRAXIN DOMAIN-CONTAINING PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25024">
        <property type="entry name" value="EGF_TEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12661">
        <property type="entry name" value="hEGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00010">
        <property type="entry name" value="EGFBLOOD"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="12"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13 15" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6 15" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="190"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="227"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="264"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="284"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="303"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="340"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="379"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="399"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="418"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="457"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="494"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="531"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="568"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="605"/>
            <end position="614"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3978249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="669" mass="72113" checksum="518E883B1BBBDA60" modified="2020-12-02" version="1">MRKPRLVLVAVVILVIFISEVPAKSSVKAGKQRSHIKNNGKSILKNTIKGKKAGNTNETKRQFINRPKIRYFENRPYIWMKPSPLTQRTIVTTHIPRPPLALPYSSRIMRLLANRYPSLYGRQMLPQGFGGYGGMSQGSLFGHGMHADGLDGTQGPHEFGDEDGDEHCEPNPCQNGGTCNEIKEGYECICSAGFKGSDCEEENHCHPNPCRNAGVCTEADGAFVCTCSEGFKGVNCEEHNKCQPNPCKNGGSCTEINGGFECSCGAEYRGPTCDEIDHCHLSPCMNGGTCMGGEGPAMTSCLCPSGYTGIHCELESRCHTSPCRNGGTCLDSQGAFQCLCPQGFTGVSCEAVINPCDSEPCLNDGSCINLGPMVYKCACARGFRGRTCEMEKRCEPNPCQNGGFCHESFTTGDYRCECPKPYKGTNCEDHINACEVNQCLNGGTCTASYGLQAKCICPSGYRGPHCEEEEHCRSTICRNGGSCSPGPNGDSCTCIAGFSGPTCEVRSKCHPNPCMNAGTCFENDVEFTCTCPNGFKGKTCEAQDKCHPNPCHHDGKCETEGLDYVCTCPGGWNGDTCEDKDRCRPNPCDHGGICLSRNNNYVCHCSADWMGHNCQISAFNNMAADAPSGGSCATTRWGCCPDGKTPAQGHAQAGCPERFKKRSKVPKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9M4</accession>
    <name>A0A7D9H9M4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Arachidonate 5-lipoxygenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081479</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000031">
        <property type="protein sequence ID" value="CAB3977142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9M4"/>
    <dbReference type="OrthoDB" id="407298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="733" mass="84125" checksum="2F3836218F09E504" modified="2020-12-02" version="1">MNPASGRATIILLFVIFSFKCSDELAKLPAKRPKGKLEENKCRYKTSKVLYQMKDVRSLHCRHIPFSCGLNPNYPPSANCSMVRCIKTKKSVPFKNVLRQIKTVCCPGWKKNEASKNSGCSVETNITLPQFTPPGCVKLRLGQLYHKQLIYRFTTPPPSPPTGEITPANFIQFLKCPVINLTLHQIAGLAVRNPHESKWVQAYFELNSILQNFTIHVQKSGMFNDLEKFSDYAKIIDAFQERINETRMRQYCKFPSNGENFKDIITDNVWQNDKVFVEQRLAGLNPMSIRKLNLKEYIERRSQFNPVLDKEMEKLSKEATDMEKMVKKGLVYILDYPVMNNATTVSDITDLNSKDQREMKSSTSPIAIFVSLFDSFTGKRELKPLAIQTDFTPCSPVFTPRDGLKWLLAKEMVQRADIQYVEIIEHLLKTHFLLGSVCIAVERHISEYHPLYDILKYHCRGVLVTNRLAFPTLLYPKTSLHHLFTIGHVGSIEILNKAFPSVTWKDANFVAALKKRGVNDRTKLPYFPYRDDGTIIWKMVKEFARELVDLYYHKSKFVSQDIELQAFANELSDKGIGPDGGKGMVKDFPNKIKSTWQLAETLARVIFIPIQHAAVNYPVTYYSAFVPNMPSKLYEDPGMAWKDFSIHSIPQAHVATRMVGLSMGLAAMRYDNLFDYHPHLQHKQAAQLVAKYHNYLMGPVLKQLKSRNKKRFSDGHLTYPYFEPGWLPNSIHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAT6</accession>
    <name>A0A7D9HAT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Immunoglobulin I-set domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A048038</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000154">
        <property type="protein sequence ID" value="CAB3978945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAT6"/>
    <dbReference type="OrthoDB" id="6019866at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043025">
        <property type="term" value="C:neuronal cell body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008046">
        <property type="term" value="F:axon guidance receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050808">
        <property type="term" value="P:synapse organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050958">
        <property type="entry name" value="Cell_Adh-Cytoskel_Orgn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080">
        <property type="entry name" value="CONTACTIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080:SF8">
        <property type="entry name" value="IG-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="524" mass="58621" checksum="442689DBDDB99438" modified="2020-12-02" version="1">MSSLELHCIISFYLKHLRRTVVFLYLVQNIMFRFYLVIFILVLFYIAPTYSIDECSARIINCTLKDGKHTVASTNTDPPRMEFKTTSLIVTFKATIGLHCRLCQSNPASTVEWLFNGKPLIFKGERMHITLTPCQETLFLLTTLHEDEGNFTCVARNKFGEANSTTEVKIFGTGCSNECVLTGGGRHQVGSKRLGPPKMKFKQYHQNAGTNDMVKISCTLCESNPPSTLTWFFNGIQLDLNKNKISVISGGCEESLHFRALKNNAGNYTCMAKNHFGEAYSTTKINFYDNSIIPPMITVKLEAQTDTIRGNAVKLGARLNITCTALNTNCAEFIWSWKRNDYLITQNETQYRQESSTNPCIRKLMIEKVIAASTGIYQCSAMGWSKIFATATSKNEISISTVPCFKGFYCPLKVHGAKRCPSGTFSMQQDATNVNQCEPCPTNARNETLMLLDDKNPEAANIFKINCPYYAETSDKKADLSSGEIVAITLSFTVLVIVVILAVLYGMRNCAEDYKNCSDDTTML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HFR9</accession>
    <name>A0A7D9HFR9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ADP-ribosylation factor-related protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A014794</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Trans-Golgi-associated GTPase that regulates protein sorting. Controls the targeting of ARL1 and its effector to the trans-Golgi. Required for the lipidation of chylomicrons in the intestine and required for VLDL lipidation in the liver.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Interacts with SYS1.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000526">
        <property type="protein sequence ID" value="CAB3982638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HFR9"/>
    <dbReference type="OrthoDB" id="414781at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043001">
        <property type="term" value="P:Golgi to plasma membrane protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034067">
        <property type="term" value="P:protein localization to Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04160">
        <property type="entry name" value="Arfrp1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024156">
        <property type="entry name" value="Small_GTPase_ARF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006689">
        <property type="entry name" value="Small_GTPase_ARF/SAR"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45909">
        <property type="entry name" value="ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45909:SF1">
        <property type="entry name" value="ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00025">
        <property type="entry name" value="Arf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00177">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00178">
        <property type="entry name" value="SAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51417">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="24"/>
            <end position="31"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="134"/>
            <end position="137"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00037377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00038765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00039478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3982638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19813" checksum="D6EFBCDFB5E836F6" modified="2020-12-02" version="1">MFTLLSGLWRYMFQKEEYYILILGLDNVGKTTLLEQIKRKFNSDYRGIPFEKITNTVGLNIGKIEVSGVRLLFWDLGGHEDLQSLWDKYYEECHGLIYIVDSVDKQRLDVASAVFSHVLQSSDLQNVPLLVLFNKQDSQNALSVEDIKDAFKDVTPYIGRRDCTVQPVSALEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HJS7</accession>
    <name>A0A7D9HJS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011077</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001037">
        <property type="protein sequence ID" value="CAB3986579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HJS7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9869" checksum="56A4A4714D2D0569" modified="2020-12-02" version="1">MLEDETDSQGGIPAPVEVIVIVGPTNSTIAKFGDTLRWKIWPWSKCVDGKQIRAVRCYHFFAEKEYHVIVDACIKYVAPMPAKERDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNM9</accession>
    <name>A0A7D9HNM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">MFS transporter ceroid lipofuscinosis neuronal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A070411</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001141">
        <property type="protein sequence ID" value="CAB3987238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNM9"/>
    <dbReference type="OrthoDB" id="6037872at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051068">
        <property type="entry name" value="MFS_Domain-Containing_Protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001958">
        <property type="entry name" value="Tet-R_TetA/multi-R_MdtG-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510">
        <property type="entry name" value="INNER MEMBRANE TRANSPORT PROTEIN YAJR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510:SF16">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY (MFS) PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01035">
        <property type="entry name" value="TCRTETA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3987238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="391" mass="42897" checksum="788A4DA0855DA2FF" modified="2020-12-02" version="1">MEYLGESKAFLGLTLAAFSTATCIFAPLFGILEVKSHDLKAIIVISASAKLFGNLLYSIPFNGYFPLFGRFISGIGESTIGVLYGAVIKCTTNKNRAKAFLYFEGLYTVGAMFGPSIGSVIVFNVNIFGWEINAGNSPGVLLVTVWVFLLMLAVFLPSDLAENSQAEEIQQDPDSDKNSGDEIIEEESSISCTPSTVGCLYYLAFLTVVCYSVISFYTPLLAVYHLGLKLIHVKLIYVNSSLAVFILYIATYLILHKISEKKCFFVAFVSAIVPISITFYFALMWNNAITANAAYLLLISMIIMSVKFMNFALACSLLSKITPSNRAAFYQSLIFTSNNIGMIVARVIAGATFDKIPMICSCLGLVTVWVFGVIWMAFEYKNLPPKASIDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HSW9</accession>
    <name>A0A7D9HSW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006576</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001562">
        <property type="protein sequence ID" value="CAB3989860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HSW9"/>
    <dbReference type="OrthoDB" id="415358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.650:FF:000025">
        <property type="entry name" value="Lysine-specific demethylase 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041667">
        <property type="entry name" value="Cupin_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003347">
        <property type="entry name" value="JmjC_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12461">
        <property type="entry name" value="HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12461:SF37">
        <property type="entry name" value="JMJC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13621">
        <property type="entry name" value="Cupin_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00558">
        <property type="entry name" value="JmjC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51184">
        <property type="entry name" value="JMJC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="509" mass="58592" checksum="63B343441E54BA56" modified="2020-12-02" version="1">MAGNKMWRYVLLLFKIFSILQTILGETPRGHMKPLGEHRSAEIETEEIIDDLHPLQFWKHYVKAGIPVLFPGAAKNSEAYKSWTEEYMMRKFGDLTVKMEARSENSDRIPVGEIGLGKDTIKNFLKNYQAMDSYVISQIPQQMEVDIELPACLGCGSFLQNIQETHLFLSAGGGKTMLHRDPFSSIHCVFNGTKQWLTIHPSQTHLIYQSEESRYEYGGFSEIDVDHVDLEEFPMISEVKYSKVVMNKGDCLFMPQGYWHQVRSNGYMNTAVSIWFSNMTHFDSTGCPSEIPASMTLRDADVLWRYPGNGDFTHGNHDIYLIKRLLLSWADEDGNIDLNTLTKKFFVYNEESKRREILEDDTKQRARKFVEFLDDSGSGTITKENVEKMSIDRLKQATLLFAPTDVSNTLDYEYSHIEESSIRKLFKYSFKDDWFDSSTFIEGYMQELGGSMQKARELVASLLGSKETGTYTELQMKLDGALINYHNSRAHDPTMERELHKHLALHDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUP6</accession>
    <name>A0A7D9HUP6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A023837</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020002325">
        <property type="protein sequence ID" value="CAB3993763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUP6"/>
    <dbReference type="OrthoDB" id="6583552at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043703032" description="ATP-dependent DNA helicase" evidence="3">
        <location>
            <begin position="19"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="4">
        <location>
            <begin position="200"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="97"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="104"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3993763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="38603" checksum="866E64AF691E078A" modified="2020-12-02" version="1">MLLSLPLVGCTFSFVAISLDNSRKVNIDAENEGNEVLQKSALQEYAERTKLKSRYTGLSELNLMQYVSQYTKVRDEFAEENVFRYSDETDRVHDAQCGQTFENDPSDNQDDDDESEVDPYDKEKVHDWMLLCRINQDYGEAGNRLSDNEAVDWFETVRAVPRDLLRESPGWIYSQRKEAEEHGQHFREDDQQCVIDPETLNEKQRLAYDIITSQNGDNAKPVYMIVCGTAATGKTYLISATKQVLAAQCVVTATTGIAAFSINGLTLHSAAQLPICVYRDLQGDSLQRLQLRLEGKRFLIIDEMSMVGHKMLSWLDNRLRAGTGKQDIPFGGIWSITTCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXL7</accession>
    <name>A0A7D9HXL7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">GDP-fucose protein O-fucosyltransferase 2</fullName>
            <ecNumber evidence="4">2.4.1.221</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">Peptide-O-fucosyltransferase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A031081</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>L-seryl-[protein] + GDP-beta-L-fucose = 3-O-(alpha-L-fucosyl)-L-seryl-[protein] + GDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:63644"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:17914"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:57273"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:189632"/>
            <dbReference type="EC" id="2.4.1.221"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="18">
            <dbReference type="Rhea" id="RHEA:63645"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="17">
            <text>L-threonyl-[protein] + GDP-beta-L-fucose = 3-O-(alpha-L-fucosyl)-L-threonyl-[protein] + GDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:70491"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:17915"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:57273"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:189631"/>
            <dbReference type="EC" id="2.4.1.221"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="17">
            <dbReference type="Rhea" id="RHEA:70492"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Golgi apparatus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the glycosyltransferase 68 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.221" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020002835">
        <property type="protein sequence ID" value="CAB3996275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXL7"/>
    <dbReference type="OrthoDB" id="422368at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046922">
        <property type="term" value="F:peptide-O-fucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11298">
        <property type="entry name" value="O-FucT-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.11350:FF:000002">
        <property type="entry name" value="GDP-fucose protein O-fucosyltransferase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019378">
        <property type="entry name" value="GDP-Fuc_O-FucTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045130">
        <property type="entry name" value="OFUT2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13398">
        <property type="entry name" value="GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13398:SF0">
        <property type="entry name" value="GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10250">
        <property type="entry name" value="O-FucT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="10" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="12" id="KW-0294">Fucose metabolism</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00025803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00026232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00033083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00047273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00048647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB3996275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="27310" checksum="8DD424053983C939" modified="2020-12-02" version="1">MSVQGLASILKPLLLKTSARSVFIDRFEEVLHIEYGQVEYWKARRSLVFAKHLRKIGDKFRQEILNSDDEKDSTVMKKDWRKNKKKEGSAVGGPYLAVHLRRADFLYARKNFVPTLDGAVKQIKAIMEKQKLDTVFLATDAPENEINYLKERLPLVKYEPTRSVLKKYGDGGMAIIDQWICAHAKYFVGTKESTFSFRIQEERDILGFNADTTFNCLCSDKELGTCEQPTRWRIVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HYI5</accession>
    <name>A0A7D9HYI5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Amino acid transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A070506</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Membrane</location>
            <topology evidence="1 8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002218">
        <property type="protein sequence ID" value="CAB3993250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HYI5"/>
    <dbReference type="OrthoDB" id="5877963at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015501">
        <property type="term" value="F:glutamate:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005313">
        <property type="term" value="F:L-glutamate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015175">
        <property type="term" value="F:neutral L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="entry name" value="Sodium:dicarboxylate symporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050746">
        <property type="entry name" value="DAACS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018107">
        <property type="entry name" value="Na-dicarboxylate_symporter_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958:SF63">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958">
        <property type="entry name" value="SODIUM/DICARBOXYLATE SYMPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00173">
        <property type="entry name" value="EDTRNSPORT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="Proton glutamate symport protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00713">
        <property type="entry name" value="NA_DICARBOXYL_SYMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00714">
        <property type="entry name" value="NA_DICARBOXYL_SYMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0769">Symport</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="60"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="96"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="231"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="271"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="304"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="336"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="417"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3993250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="531" mass="58046" checksum="CE2DADF30AF9E6E3" modified="2020-12-02" version="1">MPLKDSYCLQWLRENLLLILIMVGVLIGFLFGILVNDTVQNSTDPTPKEAAMYISFPGEIFLRMLKLIILPLIVSSIIVAVAVLDNKSTGKLGKRAVIYYMSTTVLAVILGIVLVSSIKPGATKSAGKSEEQQHVEAVHSIFDLIRNCFPDNLVGAAFQSTSTKFTKKPKGFKFTNKSVEDYKNSAKNLTKLLRNGFLNPWSVSYNQNVFQMIEESGSDYEYDGLKTDGRLNIIGILVFSIAFGIILSKMGERGRPMTQWFSIMLEVTMKLVEIIMWFSPIGICSLIAGKLAGMEDIKDNLESLGLYMLTVIVGLLIHALITLPIIYFVIVRKNPLYFFFGMGSALLTAFGTSSSAATMPVTLKCLEQKNNIDPRVAQFVIPIGATVNMDGTALYEAVAPIFIAQRHYGGSVDFGKTLLVCITATIASIGAAGIPSAGLVTMILVLQAVGLPSDDIALIVAVDWFLDRIRTTVNVWGDSLGAAIVEHLSRKDLLAVDYGNEPLPGAVDRTEGHEMDEVTPLENATDEFTYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3V6</accession>
    <name>A0A7D9I3V6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083413</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003772">
        <property type="protein sequence ID" value="CAB4000178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3V6"/>
    <dbReference type="OrthoDB" id="5989151at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="8050" checksum="F3A1DAA3622574B3" modified="2020-12-02" version="1" fragment="single">MKSLTVYTVYKKLKAFNKRKAAGLDKVPCKLLRISAEIVAPLLTQILNKTISTSIFPTDWKLARVTPIFKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I597</accession>
    <name>A0A7D9I597_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Proton-coupled folate transporter-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A045496</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003896">
        <property type="protein sequence ID" value="CAB4000691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I597"/>
    <dbReference type="OrthoDB" id="419734at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006214">
        <property type="entry name" value="Bax_inhibitor_1-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23507:SF1">
        <property type="entry name" value="FI18259P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23507">
        <property type="entry name" value="ZGC:174356"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01027">
        <property type="entry name" value="Bax1-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4000691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="802" mass="87267" checksum="50DC4FDCA24FE063" modified="2020-12-02" version="1">MMTATLETDDQNLELVQDREHVFNASEDIASDHYRVTVEPVVFCYAFGILLHVPIIQQYIFYRVGESRGLVTNKTEHHSNCDSHTAHNNPQLQRIMKDTQSETSFILLATIITSTIPTLFMTLMLGSWSDNVGRRTVIAIAIFGSITESSLILIITCFKLPIYFLMLSSFIGGICGYFPTIILSVFSYIADITHPSQRAFRLGVLEAIAFISGMISHLSSGWWIEKTGYVAPYWLITSLHFCAFLYTIFILPESRQVNVKKFGKGLCQFQHIQSITQLFQEPRNGQRWKLIYLMTATACMMLSSTGFGCVFVLYALDYPLCFNSLLIGYYLATSFFLQAVGTVLGLKYLSLFLPQTVLAQIGVISVIASLCCTAFVRNKQLIFAVPLLGCLGGIATPEVRAMMSGIVDANEQGALFAAVAAVETVCTLLGAVIFNCLYSAMMQFGFSQLIFIAMALLLVTPMTILQMFAVRLLSKSNLHAFTVKRFSTTSLGRSQLLCVRASKDISVLKRCYQTRSNAWRTWEAVEKPRGITADATGRVILGGASLAGLAALCYYGLGLSNEIGAVDRASLWPQVVRERIQATYGYFAGSLVVTAASAYGIARSRFIHRWMAASPWLTVGGGLIAMIGMSMLSAALPYEPGLNMKHLAWIGHSSVVGLVIAPLILLGGPLVVRAAACTAGVVASLSLTAACAPSDKFLSWGGPLALGLGGIFVASIGTLFLPATGAVGAGLQAVVTYGGLVVFGGFMLHDTQKIIKMAETYPIYGDTVYDPIRASMGIYMDTINIFIRILIIMANSSGGRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7K9</accession>
    <name>A0A7D9I7K9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">THAP domain-containing 9, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A017078</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004469">
        <property type="protein sequence ID" value="CAB4002853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7K9"/>
    <dbReference type="OrthoDB" id="7312725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP9-like helix-turn-helix" evidence="2">
        <location>
            <begin position="54"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4002853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="19353" checksum="71DB3297D9EDF51B" modified="2020-12-02" version="1" fragment="single">MILQFQKKRPRCSSSDERDELHTKIQQKNTYTLQQKLRRTKKKMNTMHEVIQFLEEKLVLNSKESEALLSTLNNTQLKFLYNFQDNIKSAPTARRYSDEIKEFALTLYFYSPRAYKYVRSLVPLPNPSLIRKWSSSFKCAPGFIDEAFTSLSQKVASQIMTKIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8Z9</accession>
    <name>A0A7D9I8Z9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004735">
        <property type="protein sequence ID" value="CAB4003828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8Z9"/>
    <dbReference type="OrthoDB" id="10068174at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="28155" checksum="31206D39CBBA85A7" modified="2020-12-02" version="1" fragment="single">MGRPPGDSTDLVGADKDSTSRPFAHSVPEGPCSTGGTETEAVAHLQDLQIPRLTSRSTSKEFQTRLYLPKGQFDSEYTSNGALKVFHPRMGNDHTGPLDPAGHPGLPDRTCNSSSATVITQCTKAFFNTRDCVGAKGKRIVDEASNSSSTIPKARGRIYKFYLCGTQPLNQFLGYEHFKMEGIHMLRDLLKKGDFFVKIDLKDAYLTVPIWKNHQKYLQFLWKDTMLEFAYAFPFGLAIAPRVFTKLMKPVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IG50</accession>
    <name>A0A7D9IG50_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005077">
        <property type="protein sequence ID" value="CAB4005029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IG50"/>
    <dbReference type="OrthoDB" id="545910at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12748" checksum="D10BE0D9E7258792" modified="2020-12-02" version="1">MRAVRNLMKASYGRPFLWGNVQPLVKPECHHSLSCMVRKVKKEGLNKDRKFFCCPNDKESSCGYFDWVPEEPRQDVSFVEPNSSKPPEKHEEHYLTNKFINDFANSLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRL9</accession>
    <name>A0A7D9IRL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Fibrillin-2 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A056065</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008465">
        <property type="protein sequence ID" value="CAB4014834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRL9"/>
    <dbReference type="OrthoDB" id="409374at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000506">
        <property type="entry name" value="Adhesion G protein-coupled receptor E1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000012">
        <property type="entry name" value="Delta-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000653">
        <property type="entry name" value="Putative Fibrillin-1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014853">
        <property type="entry name" value="VWF/SSPO/ZAN-like_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001846">
        <property type="entry name" value="VWF_type-D"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039:SF58">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039">
        <property type="entry name" value="FIBRILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08742">
        <property type="entry name" value="C8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00832">
        <property type="entry name" value="C8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51233">
        <property type="entry name" value="VWFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="177"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="177"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="204"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="216"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="163"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="286"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4014834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="538" mass="55642" checksum="DA98D96A41AA1686" modified="2020-12-02" version="1">MNKIAGLCGTFNQNPGDDLLIETRTTVGSAVDFGNSWKTDPDGDDAPVVPHPCETYPERNATATANCSALLTSPFNVCASQVDPVTGGYIDDCRYDVCGCGVDPTVCLCQAIEAYVADCASYGVIIIWLSDDRYQQCDSPCASAPCFNGGTCSNSGTSFSCSCPVGYSGDRCEIQVSPTPSTTDPTVSTTPNTTDPTVSTTPNITDPTVSTTSNITDPTVSTTPSTTNPTVSTTPSTTDPTVSTTPSTTDPTVSTTPTTPVLPCGSNPCMNGGNCSDNGTSFSCSCPVGYTAQLCDDINECSQANICHAQATCNNTQGSYVCTCNTGYTGNGTICSDIDECSQANTCHADATCTNTPGSYLCTCNTGYTGNGTDCVDIDECSQANMCHADATCTNTPGSYLCTCNTGYTGNGTYCVDTDECSQANMCHADATCTNTPGSYLCTCNTGYTGNGTYCVDIDECSQANMCHADATCTNTPGSYLCTCNTGYTGNGTYCVDIEECSQANMCHADATCTNTPGSYLCTCNTGYTGNGTYCVGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWN0</accession>
    <name>A0A7D9IWN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009757">
        <property type="protein sequence ID" value="CAB4017892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWN0"/>
    <dbReference type="OrthoDB" id="191139at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43157:SF31">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43157">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="323" mass="35577" checksum="23F9437180E5DAB0" modified="2020-12-02" version="1">MEFFVCLAFLPVVLLLIYHAIIKKYAAGGVCTSKATMAGKTVIITGANAGIGKATAIDMAQRGARVIMACRDPKRGEAALKDVVEETGSKEVVLKQLDLASLKSVRKFAEDINKNEPELHVLINNAGLAYPPKQSKTEDGFELTMGVNYLGHFLLTNLLLDLLKKTAPSRIVVVASSVHHQLTKEFKFDNIHSEKFYDHWDTYGQSKLACILFTRELAKRLEGTGVTINALHPGVITTELVVNFMNPIGMFFIMVGMRFLSKTPEQGAQTTIHLAVSKEVKDVSGLYFSDCALKEPSKYAQDDGVAKKLWEVSSDLVGFDRHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IYG9</accession>
    <name>A0A7D9IYG9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A047319</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010719">
        <property type="protein sequence ID" value="CAB4019975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IYG9"/>
    <dbReference type="OrthoDB" id="5962731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="422"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="199"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="270"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="550" mass="61320" checksum="245174197DCB5F56" modified="2020-12-02" version="1">MNVEDKKQERSKAKMAVAVAARRLIGAYNRDCEYDILKDSMFELEKTTIEQKARQQSAGPVKVALKNDICRIHELITVVDESFKLENVNMAALQLDKNDLQSILNIICDNMAKLGSIETQEQVNLIQEEVDAIIRAVYNCIRKINLFLHEQQAFVKSLHIETATLPSETNTPPENINTVFPPEINTNIPPEDTETINTMSPPGNQHQHPPENTETINTMSPPGNQHQHPPENTETINTMSPPGNQHQHTPENTETINTMSPPGNQHQHPPETINTNTPPDINTNTPPEDTDTINTMSPPETNTPPETISTTSPSTNTIPPMLPINAPPINYSSPFGTQVTTNITKANTPLPTLPGTSTGFCLNTSAQTFIPSTTFHSDERPIGTLPSADSELNILTPNSLLLGRATAKNPGGWQPNGNNPGKRYHVVQIVTDEFWKKWTELYAPALVIRRKWNTANRNLRPEDVVIIADRNTLRGDYRLGIVQEVFLSQDGKVRRVNVMYKNFQVGEKVQKYKGHNEAVIVSRSSQRLSLLVPVDMDQDQETKSEAKESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6V6</accession>
    <name>A0A7D9J6V6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004677</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012423">
        <property type="protein sequence ID" value="CAB4023294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6V6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="22181" checksum="7B4A36AD18432ACB" modified="2020-12-02" version="1" fragment="single">GCPEDAPGLLPPDYTKADIPKLREDLRKWESVMTASSKAWWREFLGCIEIENETTTEDTCCILDLKQNLKRPAATQSEETPPRVNMQFREKELAPLDEPPRTRGIQLVDDILMALAPGVFVAVYLSNYKKMPVIGKVVEVLEEEFTIHYWKGSYAKPWEPHLLKNDSENKLLENTRKYLKRWYREERVRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBH1</accession>
    <name>A0A7D9JBH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ubiquitin- ligase E3A isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001878</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014030">
        <property type="protein sequence ID" value="CAB4026134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBH1"/>
    <dbReference type="OrthoDB" id="5981550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.130.10">
        <property type="entry name" value="Ubiquitin-protein ligase E3A, N-terminal zinc-binding domain (AZUL)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032353">
        <property type="entry name" value="AZUL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042556">
        <property type="entry name" value="AZUL_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16558">
        <property type="entry name" value="AZUL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="456" mass="51684" checksum="917FD5AC99772B38" modified="2020-12-02" version="1">MFSKLGGGSCDGELRPDIAECSDNGTSNRKLAFQNLLRRYYHQVTHGCGNAKCENKSCAQNRPAPVGNDEGAAIALQLVKERANLCVGELPKVSEKQKEPPKVQEKEEIFLTEEKLDEVITSCEQENNFKPLVSLLGDVFTKSASLNNSFPLQSNNDEGVDLKSVKKMYETLFNLQNSAIENTLINSLGTLSTDIEVELKRKAYVVNNTNYFKQFIIIFENPYLNQPEYLENALPCFCKAVSLLPLNIQVPLVQEWSKHSRDSLRKKVETVQHLITLRVIDGPSSNSISSTVNEDPVIAHATKCLKLFYYASLLGGKFDKLSSTEEPMAMDVGESDEDATLVKRLELDVLDCREPLLPFDEFINDPLNEEIAVDRDFTLYKTKEGFSFMECNCILTTHIKSVWMVYDNRVHMLQERRLTHIYSLLRGQQPTPYLKLTVQRDNLIQDALVNVSLNYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBL4</accession>
    <name>A0A7D9JBL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine- kinase SPK-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070969</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014079">
        <property type="protein sequence ID" value="CAB4026216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBL4"/>
    <dbReference type="OrthoDB" id="5985221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27006:SF606">
        <property type="entry name" value="INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27006">
        <property type="entry name" value="PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16096" checksum="D4D09D9CF9E62C6A" modified="2020-12-02" version="1">MSLFGSLKNCTQSKNLETVDVSGLSQYLYRSLVDKDEIGDGGFAVVFTAMLPGEHEKIVVKKLLDSSLEARKLLLKEARLISQLNHANIVKFKGICLDRYALLMEYVYFDFKPIGHDLIVHNVVAMECIAQYSNMPLLTLRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JC62</accession>
    <name>A0A7D9JC62_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Dolichyldiphosphatase</fullName>
            <ecNumber evidence="11">3.6.1.43</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A071811</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 11">Required for efficient N-glycosylation. Necessary for maintaining optimal levels of dolichol-linked oligosaccharides. Hydrolyzes dolichyl pyrophosphate at a very high rate and dolichyl monophosphate at a much lower rate. Does not act on phosphatidate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>a di-trans,poly-cis-dolichyl diphosphate + H2O = a di-trans,poly-cis-dolichyl phosphate + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14385"/>
            <dbReference type="Rhea" id="RHEA-COMP:19498"/>
            <dbReference type="Rhea" id="RHEA-COMP:19506"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57497"/>
            <dbReference type="ChEBI" id="CHEBI:57683"/>
            <dbReference type="EC" id="3.6.1.43"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Endoplasmic reticulum membrane</location>
            <topology evidence="1 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the dolichyldiphosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.43" evidence="11"/>
    <dbReference type="EMBL" id="CACRXK020014119">
        <property type="protein sequence ID" value="CAB4026292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JC62"/>
    <dbReference type="OrthoDB" id="302705at2759"/>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047874">
        <property type="term" value="F:dolichyldiphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006487">
        <property type="term" value="P:protein N-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03382">
        <property type="entry name" value="PAP2_dolichyldiphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.144.10:FF:000003">
        <property type="entry name" value="Dolichyldiphosphatase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.144.10">
        <property type="entry name" value="Phosphatidic acid phosphatase type 2/haloperoxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039667">
        <property type="entry name" value="Dolichyldiphosphatase_PAP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000326">
        <property type="entry name" value="PAP2/HPO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036938">
        <property type="entry name" value="PAP2/HPO_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11247:SF1">
        <property type="entry name" value="DOLICHYLDIPHOSPHATASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11247">
        <property type="entry name" value="PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01569">
        <property type="entry name" value="PAP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00014">
        <property type="entry name" value="acidPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48317">
        <property type="entry name" value="Acid phosphatase/Vanadium-dependent haloperoxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="157"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="181"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024907"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU367078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4026292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="28973" checksum="CE1E9A56C80BB934" modified="2020-12-02" version="1">MAVDESRLKCEKNDLKTSILYSYLAETNTKWKPVGLTFVEYPEGDLAGKILAWLSLSPIFILIGFVAVIIFRRELHTVAFFLGCVLNEGLSIAIKHAIKEPRPCRSPTSHYIEYGMPSSHAAFVAFFTTYTLFFVYVRLPSPSSEFIDNLWRHLTSLGLLCLTAAVSFGRVYLHYHTLHQVLWGLALGLCFGIVWFLIVHNLLTQLFPVITSWKISEYFLIRDSTRIPSILWFEYTRAREEVRKRQRRKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JC73</accession>
    <name>A0A7D9JC73_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Deoxyribonuclease TATDN1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A052322</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Deoxyribonuclease which catalyzes (in vitro) the decatenation of kinetoplast DNA, which are circular DNA catenated to each other, producing linear DNA molecules. Plays an important role in chromosomal segregation and cell cycle progression during eye development probably via its DNA decatenation activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. TatD-type hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013993">
        <property type="protein sequence ID" value="CAB4026071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JC73"/>
    <dbReference type="OrthoDB" id="6079689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008296">
        <property type="term" value="F:3'-5'-DNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01310">
        <property type="entry name" value="TatD_DNAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018228">
        <property type="entry name" value="DNase_TatD-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050891">
        <property type="entry name" value="TatD-type_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10060:SF15">
        <property type="entry name" value="DEOXYRIBONUCLEASE TATDN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10060">
        <property type="entry name" value="TATD FAMILY DEOXYRIBONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005902">
        <property type="entry name" value="DNase_TatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01091">
        <property type="entry name" value="TATD_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00039767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00045223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR005902-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4026071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="30140" checksum="F1B20B9DD84A024F" modified="2020-12-02" version="1" fragment="single">TIVNVSVKLIDLMFRGIYHGKQHHPDDLTSVLKRAVDIGVTKMIITCGCSDDIKNGLELSKTRDGLYCTVGCHPTRCGEFEKDGDPDAYLNGLLEVIQNNKEKVVAVGECGLDYDRLHFCPKETQLKYFERQIDLAEKTKLPMFLHMRNANKDFCDIIKRNRDRIHAGVAHCFTGNKEEAHSILDQGLFIGVTGCSFKTEENLEVVKSIPAEKLMIETDAPWCDIRPTHAGFQYIKTKFDTKKKEKWQEGWCVKSRNEPTHLMY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JCE6</accession>
    <name>A0A7D9JCE6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064871</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014419">
        <property type="protein sequence ID" value="CAB4026817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JCE6"/>
    <dbReference type="OrthoDB" id="6015586at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="453" mass="51878" checksum="09C22E4005A79D6E" modified="2020-12-02" version="1">MKECPENTALGNFMLEMNLNQLIITPTRITDTSESLIDVIITSASHLVNESGVMDTIKSDHLPVSRNSFQKTKTEALTLSETWLNTTITNAEIYIEGYTLYRQDRLNKRGGGVCTYIRNDIKVSKLKEISSVSENCFHQLWLKLQSKKLKSIVICISYRPPECPLSCLETNLKPSFVQALLLNKPIFILGDLNCNVMKECPENTALGNFMLEMNLNQLIITPTRITDTSESLIDVIITSASHLVNESGVMDTIKSDHLPVYAVLNMKLPKPPPRYILTRSYKDYDGERFTAHLASRSQELISIFSDSNVNSKLDNFNNVLLITLAVHAPVRITKIQNRSCPFITTDIKNQMFHRDQLHRRYKRTRDIDDWRAFKNAQRSVKSTLKAAEKQHVQTEVNLHKDNSRSLWKVINRCIPSKDKRILTYHKNTLEGWPTISTSSFNLYEKELPKQLKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JCX2</accession>
    <name>A0A7D9JCX2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070932</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014665">
        <property type="protein sequence ID" value="CAB4027210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JCX2"/>
    <dbReference type="OrthoDB" id="6020041at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053320">
        <property type="entry name" value="Protein_DD3-3_O-glyco"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35170">
        <property type="entry name" value="PROTEIN DD3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35170:SF2">
        <property type="entry name" value="PROTEIN DD3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="10"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="17"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="643" mass="73307" checksum="69E0A0714264C393" modified="2020-12-02" version="1" fragment="single">LLVNLSEADTFLHSPRGSNNRLNGANVNRGNNNRMFDSQNNAKGGYNVGDKDQKSNSEETQFNMNYFQSGEGFASTSGLTGKSQLTIEWTNQHGCSDRDLNCNFVLQYRCQDDANNQKLNQHSMRNAVLASTPHAQNKNYWLNRDSVSYTRGLHESWEWYDKCTKRSRNQGLFTADQKLKGKTSIYTRQNANGGRSGYECPEERDYYPYWHPTDWIDIAVFAYNESMCKYYRKESFNVKNKGECLQYYPSKANGFRHDSVYNNEIDCKKNKGFWISFSNYLEEYPKYQTEAKCKAKSSRKLPLKWDIPYRSEDIDNLKTTGDNVKSLKRCLVALDAPECTKAPYTRSNHLGNVQGIVPFRYTWALPHFPSGRVQRCVLRLRYNISTGDYPPFNTFSDENDNPNAGVHSPVQNNPKVKVGAIQLPLQLAINTAQFGRTFQDRSHLFKLLPRPIKVNDNDVIYNLNVRGKRGNIVQAFPAVEYDFIPKRMTISSASLVHIQWTGSNTNPSGNAGQGKAGTDRHNMVEMADPSVNYPLTSEKPLKMFTNAEIVWRSDEGTETKQDLILSMASSGYYNSMTLCQASPQKTAFNDELNNAPASYRGMLLRFAPGEYNYMCTRNNNFSNRNQKGRLVVRNVPGSKLSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JEZ2</accession>
    <name>A0A7D9JEZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107352934</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074141</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014914">
        <property type="protein sequence ID" value="CAB4027622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JEZ2"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="503" mass="58439" checksum="B3F513948F7E0270" modified="2020-12-02" version="1">MADLRSILESVVSLFNEIESFNSGATDQFTNLGYLETLNVRAEECIRLLRTLLQRISEITRERQGQSINHNMQLRDDFQQICNAFERSYYRFLQSTTASTDQLNFSCQTERTSVPGRPRVIITRQQIEALREIHFSWSCVARLLGVSERTLDRRRREFQMPMGRACYSNIGDDELDRIISEIIGLSPNAGETLVQGALRHRGFLIQRRRVRASLLRVDPISRLLRRRQLIYRRCYQVRAPNSLWHVDGNHKLIRWRFVVHGAIDGYSRLVTFLHCSTNNQAATVLQHFTSAIGRFGCPSRVRTDMGLENVEIARYMLYRRGIGRGSIITGSSVHNQRIERLWRDVFRCVSYQFRNIFFYMEESNILDPLAEVHLFCLHYVYLPRINRALTEFVEQWNQHPVSTEENRSPYQLWVSGMLASANSLSTAVRDVIDGTEEPLLQYYGVDEDGPIVADDDDNIVNVPPLNIELSQEQEHLIMDQIDPLLEDNNYGINSFIRMVNLLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JNY7</accession>
    <name>A0A7D9JNY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045386</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019253">
        <property type="protein sequence ID" value="CAB4033447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JNY7"/>
    <dbReference type="OrthoDB" id="10068084at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="32546" checksum="3AD9A427CD10B8FB" modified="2020-12-02" version="1">MAEELQAKMQTTSTKEKDVSESVPPVKQNAGQSTLQGMLESTSVFRRQFKIVGQIGQPNEKDKLSFTYLTRQIDTGVKQGYTEQEIVDGVIRSINGALKIKVEDTLVYENDHIQKLFLRTVETGLQDENVRVRVRGYLRNPTISDEELILQVNNAVSTENERVRKLRNQNRPKLAQVYQVAEKAESQDKILKTLEALKVEVAQVKSQLKDINQEIEQARLPNSPAPVDTRNQRRNTPPKCLQCQTSGNDKCSHCFICGSDNHFAIGCRQNRGKNTLNSRRLPLRGQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JR69</accession>
    <name>A0A7D9JR69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060844</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020471">
        <property type="protein sequence ID" value="CAB4034842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JR69"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6001" checksum="D322FFA6AD2ED2F2" modified="2020-12-02" version="1" fragment="single">MAKTVMVPHALTNTGATTSHPFTSSEYVTAAVPASAETPSTQETKTSYLSCIRGKLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JTY9</accession>
    <name>A0A7D9JTY9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">CST complex subunit CTC1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A051708</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
            <location evidence="2">Telomere</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CTC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021501">
        <property type="protein sequence ID" value="CAB4035920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JTY9"/>
    <dbReference type="OrthoDB" id="2314520at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990879">
        <property type="term" value="C:CST complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042162">
        <property type="term" value="F:telomeric DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045740">
        <property type="term" value="P:positive regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010833">
        <property type="term" value="P:telomere maintenance via telomere lengthening"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029156">
        <property type="entry name" value="CTC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042617">
        <property type="entry name" value="CTC1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14865">
        <property type="entry name" value="CST COMPLEX SUBUNIT CTC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14865:SF2">
        <property type="entry name" value="CST COMPLEX SUBUNIT CTC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15489">
        <property type="entry name" value="CTC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0158">Chromosome</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0779">Telomere</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4035920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="756" mass="86247" checksum="4183801308CDD8A7" modified="2020-12-02" version="1">MFEEFFSNPHHCIVTKPMHQIPIPTPLTLKDFLSLVDELRTCRDKQIHSGLARGQYGWNYQEITQEELPMNVILLGWIKNGNGKLYFCDGTSSILCLITESEVSETIHKCDAGCLINRHDMNGPILPRTDKVKPICPLPQTTHLGAILKLTSFKIIIETFNGLETISDEEADKRDPLRNIYLVFSALDAIIIGKVPESDTVVVSKKQKVEESVKNDKNNGPGCRFVFLVKHKELQAVQFKNSAPSLTACVHGYILAKHDLTSQTDNEGGLGSHQDKSGDLGSQIVKEVKTVTKQELTIEFTNSCWLDLLHPGKFYYIIELDHPNKTCQIEHALKRKISLIPMSSDVRFEEINTRVLLCDDYKDWALLAEQFAEINSVRMYLSKWENRKPKDMFKSTKFLVSLRGIILTRDTVHSNDKQCPFPSIPSGQMYLPRYGLISAVHASALGLGYCYLGNRSMVLTVQDILTADSVKMYLDFSTRMYPIGLLPGAVVTFRHLQQHISKQGNLYLTFEACSSIRIESLPMTTIPPSNQTKKNLSQHSSLIELRRIIDYFNFQSHGKLICTLSYVLCRIIAIQKISLKWTCLKCGRLPSNCYCHVSGTTQTWVFSAQARCLVEDGTGEAMLFIEDHDLVRQMLFLKESTWLEIKNMSRKHGEVWYQRSAYWKDGRAGGDSKVDRRLSSVVSSHKLYRRIKILCKQFKMASIQGQETRRIRVDGIEHTTDISPKTTLNVLEIHEINYRNELKTSILYLQQRLLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JZ95</accession>
    <name>A0A7D9JZ95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024798">
        <property type="protein sequence ID" value="CAB4038962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JZ95"/>
    <dbReference type="OrthoDB" id="66888at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12550" checksum="F9173B8D41ABDFA4" modified="2020-12-02" version="1">MSNVESKISSHSAGTENKDLDLEEETDELQVTEQNVCQTKRGKPVHPIWSDAFDVPDVHCIQSPNNALCKHCKQSVRHHHKTLSVETHLCKCQPFKKIMMDNATVQTGGITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K4F9</accession>
    <name>A0A7D9K4F9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027425">
        <property type="protein sequence ID" value="CAB4040894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K4F9"/>
    <dbReference type="OrthoDB" id="416987at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="190"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="222"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="236"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="251"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="285"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="311"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="37418" checksum="A3EDE9388B2D7D08" modified="2020-12-02" version="1" fragment="single">ESNDYEQLYTLDVVGIEGRGENDQLDVHHEFKENITRADDGRYQVKVPSIPGHSLPNSNLEPSGKRLANVCKRIERDGKLKDDYDEIIEKQLESGIIEGAPVKPNGERVDHIPHKHVVREEANKAKESAEIPENFRNFGLVGDSSENPWGLNDGKERGDINEETEEHENTPERLRKLKAVTAEETKEGQGDEDENASDNSDQDETFELMDDEGSREKRKKLKGDNVDNIIREERIKKKRKIKGKKKVLSKGHTEEVNNVERKREENEVENLEENDIKTKGKVKSNVVSQGNTKETSSVENTSERKKKKRKITDESRMKEKLEKSKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KHF2</accession>
    <name>A0A7D9KHF2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tc1-like transposase DDE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038256</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037004">
        <property type="protein sequence ID" value="CAB4044955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KHF2"/>
    <dbReference type="OrthoDB" id="7744248at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tc1-like transposase DDE" evidence="1">
        <location>
            <begin position="7"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14536" checksum="3B399A71D9215786" modified="2020-12-02" version="1" fragment="single">MIRRRGAFKSNTAKAWLLEMLENLPLGITVDSVVVVCDNAPCHSKFEECVIEQPGLTFCRLEQYSPMLNPVNTVWSKMEAVVKQRMRVPQVHRPEVGEQRLQYVEALTDEAMDQIELQNIVHASILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KKV7</accession>
    <name>A0A7D9KKV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041929">
        <property type="protein sequence ID" value="CAB4045784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KKV7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13683" checksum="711E711AC9BB158A" modified="2020-12-02" version="1" fragment="single">MKPKSITEDQSYTKSTIGSDNREKEVDVVNVLGTKWDSPETSTRELTSAEVSAAESLWVKSVQSMSFAKEIEFLKTPLVHQFGLFLDGQEILRCKGRINEATLSLTAKIPALLPPKHWFTEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KQZ8</accession>
    <name>A0A7D9KQZ8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF7041 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011973</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020045726">
        <property type="protein sequence ID" value="CAB4046096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KQZ8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055469">
        <property type="entry name" value="DUF7041"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23055">
        <property type="entry name" value="DUF7041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7041" evidence="1">
        <location>
            <begin position="122"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="208" mass="23412" checksum="0E6108C4CC083040" modified="2020-12-02" version="1" fragment="single">MSSSVRSSTRQKTYDAVLNELFVAIKITTEALNNGKLSSAISGNRVSMLERIKSRFDEARQRLEDSDIEDKESSIDFQEEKVASLILDFFVILDRLEHLSSTKESAVTESISRKTSTKISMRPFEESCPSVWFRQLEIQLEAAAVTKDEEKFAHLQRFLDGPQSLAIAPTLDSSPGVRYQEAKELLLALFLPEKPTRVANIIGARRGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1F8</accession>
    <name>A0A7D9L1F8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012247">
        <property type="protein sequence ID" value="CAB4022973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1F8"/>
    <dbReference type="OrthoDB" id="5986122at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="10893" checksum="466CF8AD9D43658E" modified="2020-12-02" version="1" fragment="single">MENISREEKFKAMKLLELKAYLQNRGITVNSYLKPELVAIACAVEEMSLPLLFQVSEAQDQLNLSRRLRVHDIQLPDPFKMNVLNDFTHCFSPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LD80</accession>
    <name>A0A7D9LD80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011896</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016918">
        <property type="protein sequence ID" value="CAB4030505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LD80"/>
    <dbReference type="OrthoDB" id="8065733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955:SF65">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955">
        <property type="entry name" value="RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="22238" checksum="E87DECF6B04F1622" modified="2020-12-02" version="1" fragment="single">MIEEPSSPAIVLSSQVVIEEPSSPAMIEVPSSQVVIEEPSSPAMIEVPSSQVVIEEPSSPAMIEVPSSSAMIEVPSSPAMIEVPSSPAMIEVPSSPAMIEEPSSPAVIKEPSSPIVMEETESYTKTTIGQETTVTKDKCVKVLGVLWDTENDTFMFEFSSLVQYARSLPATKRSVLKVTSKIFDPVGFLTPFVIKMKALFQELCVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LE74</accession>
    <name>A0A7D9LE74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033392</name>
        <name evidence="1" type="ORF">PACLA_8A039428</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013077">
        <property type="protein sequence ID" value="CAB4024521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020015673">
        <property type="protein sequence ID" value="CAB4028721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LE74"/>
    <dbReference type="OrthoDB" id="5988102at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="15274" checksum="520FF0FC29C830AE" modified="2020-12-02" version="1">MEQQSHNLTVSMAHSVPIRPMPEFNPDAELGASVATRWKNWVADFDLFLLASGVTDPKRQRALLLYQAGARVREIFKQLPDTGEDKDYDIAKAKLLAHFEPQKNRRYEVYRFRKAVQEPRKLSISFTHGFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFU6</accession>
    <name>A0A7D9LFU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035805</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017657">
        <property type="protein sequence ID" value="CAB4031472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFU6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="401" mass="46809" checksum="FEB4DD5A4FE056B6" modified="2020-12-02" version="1" fragment="single">ISIFARVLDFGISSMRVVMSILDFGTNMSVLMSYEYILFWYLKSTLIHLQKSSNIPMSIFIRMPNFGTIYMRMLMSIMDFEFDRQMWATWYTSWLMQFVLLVFVSGPYGLYFSHIQSSDYTIVIKKIILFYHFQKFKFSKILSQKITFFGFFTWLKMDLRSAHFNKLQVPPKRWNSIIYISVLFSGTCQLFDLVFFCVFFTGDVKLNAFTVLKFDHSLIIHMKKPITPIVDGHIKNLLHLVHDHTRNRVSGASDRKPIRGRLMGRLFRLLVECSRGGMNDGIILIVISYILPELYDDESQHMLGMQHKNIYATIVIPRFVQTKHANFYLSSREIRFMICLDHFSKDCFERLFHLDENCALTAMTTFTPYKKMQNRTSSTSYSATSSGKASGSSNSIIKISN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LMZ4</accession>
    <name>A0A7D9LMZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022981">
        <property type="protein sequence ID" value="CAB4037355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LMZ4"/>
    <dbReference type="OrthoDB" id="3485858at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="485" mass="55162" checksum="E47B6BC9143C088A" modified="2020-12-02" version="1" fragment="single">MLLTRRERRNYNCIMEIMNVAVCEGLREIFKQEWNKHYGISKGLWDDTPLTGNELYNMERPRSAAKSYLHLFKSGKRSDWDCSALTDAILYSKALKMHLAPHVSNKVDELRDLRNKLIHYFGSQHKMSDVAFDNAYKKVVNCFNVLLLSTADIQRIKNSWRGNHVTRLWGMCALYILATQNKALFKVLPRKPVHLVANRNTAVKTILEELHNLSSRNDRALTYLYVSGKPGSGTSQLARLVGEQYATTTTFGWFGGTTFVMTLNGRSLRHILNSYVDFAHRMKCNKSIIANIVDSDETRTVMKVESVQKEIVKALKVVNNDYTWLLIVDNVVKLSKVSSFLPQLEDEDWTGGQVLIATQDISSVSSNSSLTVRISVSQGMDPAESCKFLIDLSGHAVVENQLLNVAKELDYQPLALAYAAFYVKQRRKSTASAKFAWEDYLKNLDEGKRNFTEKKPNEINDTYSLTMYTAVLLAISYILSVDQSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNC7</accession>
    <name>A0A7D9LNC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transient receptor potential cation channel subfamily A member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023215">
        <property type="protein sequence ID" value="CAB4037550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNC7"/>
    <dbReference type="OrthoDB" id="5987460at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="36445" checksum="8465D8406F59B482" modified="2020-12-02" version="1" fragment="single">PKYDALLKKCHSLLEGIAELKFPPVKPRWADFTDAGPGVACNNFEVQFRDAELAIIHNSDYRIRLHSSRGNSSDNEAERTNSAIGDSIVDGATLQWNKHKRFDGLSDEDISKLTVKEFEEHETDRMEKNAWYCANEIRNRVDGAPVFNEFIKCYLTPKQSPFFFNKKYLKQFQSCTAAESKQQVPGYHYITNVLNFIERHYRIGELYMEYIRDRCRENGEVCKKCSEKDWVGPRFSRVPAPYPDPDKPGHYMSVFNTPTTDNNGQLREVDDVAPRAVIKRLYKAGTISSDNIEQLKEVSSRYCVEEKDVASYVKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LUH1</accession>
    <name>A0A7D9LUH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064554</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024552">
        <property type="protein sequence ID" value="CAB4038766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LUH1"/>
    <dbReference type="OrthoDB" id="5987109at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018061">
        <property type="entry name" value="Retropepsins"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00077">
        <property type="entry name" value="RVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="280" mass="31812" checksum="F70324C17E9FC4C4" modified="2020-12-02" version="1">MKDDEIEEEDDNYGIYSLGKGQAEPYVVDVLVSNESLNMEVDTGAAVSVMNKDTYTLLKKKHPNLELKESKVRLNTYTGEQVNVLGQLETSVKYEDQEGVWSLLVITGKGPNLIGRNWLQKIKINWKNIFQLKEDKNTSVKVNKLLEKYEKVFHEELGTFSGSKAKIYVAEDASPKYYKARPVPYALREKVEKELERFQEEGTIEPVQFADLAAPIVPIVKDDKSIRICGDYKVTVNQAAKLDNYPILKAEDLFATLSGGEKFTNLDMSQAYQQILLEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LY59</accession>
    <name>A0A7D9LY59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Unconventional myosin-X-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A046517</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024351">
        <property type="protein sequence ID" value="CAB4038561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LY59"/>
    <dbReference type="OrthoDB" id="10055605at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016459">
        <property type="term" value="C:myosin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051724">
        <property type="entry name" value="Actin_motor_Myosin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001609">
        <property type="entry name" value="Myosin_head_motor_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46049">
        <property type="entry name" value="AGAP003327-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46049:SF3">
        <property type="entry name" value="MYOSIN VIIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00063">
        <property type="entry name" value="Myosin_head"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00193">
        <property type="entry name" value="MYOSINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00242">
        <property type="entry name" value="MYSc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51456">
        <property type="entry name" value="MYOSIN_MOTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="2 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0505">Motor protein</keyword>
    <keyword evidence="3 5" id="KW-0518">Myosin</keyword>
    <keyword evidence="1 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="242"/>
            <end position="249"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4038561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="32312" checksum="85D22C24A324D905" modified="2020-12-02" version="1" fragment="single">MPLSTPQPGETIFLMEHLEETPVNSNQIREWTKRDPVMSKVLRFTMQGWPDSYDSTTFKSYHNKKFELSVEDGCLLWGTRVIIPPPGRSKILTELHEAHPGVSRMKALARSYVWWSTLDEDIERESITKDQSSLSRENASVMHNSSLEGVEDMAHLEDLHEAGILHNLHVRYKKDEIYTYIGSILSAINPYRRIEGFYTTDVMTEYSKCHLGEKPPHIFAIANESYYSMIKRGQSQCVLISGESGAGKTESTKFMLNYLSQLSSSVQGGGETDNVLNVEDAILQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M190</accession>
    <name>A0A7D9M190_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RING finger 151-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A052511</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029211">
        <property type="protein sequence ID" value="CAB4041950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M190"/>
    <dbReference type="OrthoDB" id="9049620at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018957">
        <property type="entry name" value="Znf_C3HC4_RING-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013010">
        <property type="entry name" value="Znf_SIAH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00097">
        <property type="entry name" value="zf-C3HC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51081">
        <property type="entry name" value="ZF_SIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="192"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="211"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4041950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="553" mass="61351" checksum="297E2278F6C7EB7D" modified="2020-12-02" version="1">MACASSTQNDNTAYLDHFTCNICLEVPQEPVQCVKNEHYFCMKCITIHLTRSQTCPVCQDALTPETLRPIPRTVANLLEQFQPLTCKYASRGCTTAIKREDLFSHQEECGFAPVQCSHEGCEATVDRQDLVSHQQACEFRSVTCEDCQEAMKQREYGKHGCVFRREIDENRRGLVEIQKILREMQDEQLRQSAEIQRLASRESGQPHAAQIQDSENLRQPTSELRQPNPTQGQGKSVSEAPANYPDLCTTISSISLSPTRSQTTVNKQIVVAGGRSKSYEVFNWDTQEWSLQQDSLFFEHYKGFSFVYDNKMMLCGGTSTIKVECVDIANKSVSTFPALLPGTDCGKGVLSGGDKMLTFGQSVSATSLKPPFKTTVVASYTKSKVKKSSCYGVACVNENAVVIVGGCRTKGAEQSCDNVSLYNPATKCFESLSPLPYSVADMAVVVYKDNIVILGGRKAYYHKPLFETVLRTEYLNDALMYNISKQQCRKLPSMLEKRSGCAAVIMGDTIIAMGGCNHLDLKTAEYLVLGEDTWKKLPPMHYARAGATACLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FJV2</accession>
    <name>A0A6S7FJV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000071">
        <property type="protein sequence ID" value="CAB3977787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FJV2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="67"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="18147" checksum="375B647A6A492519" modified="2020-12-02" version="1">MKIAKSHLYATCNLDPLLKCKCYVVLILKICIALSFSWINNTSFSKEGIRLRFVHTAVRPHICHNESSSTEPSPYSISPTTSGPGPYPQQGYGAPPPGQGPYAPGPYGHGGPGPYGTSAQYPPGQQPQTVYVYEDRRRQQKQNDEDTCLAMMAGACAMCLCCSLLSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FK65</accession>
    <name>A0A6S7FK65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A000525</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000080">
        <property type="protein sequence ID" value="CAB3977927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FK65"/>
    <dbReference type="OrthoDB" id="6059742at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043915963" evidence="3">
        <location>
            <begin position="20"/>
            <end position="698"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="589"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="33"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="603"/>
            <end position="612"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3977927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="698" mass="79053" checksum="399FF54B9BFE6B0E" modified="2020-12-02" version="1">MNPGTLALLCAAILVSATASIIDNRFEDPAADIALLREQMVSLSNDLKQTKEESKKMKTRVGALTRQMMLQQLFVEERLRSEGQSGVKQTLVNASSPFMIILTISENSPEFIGVLNGVEFRTRHNDYRLYMPSSNTSEYHKTEEIPFPDVPPEVASKGSLDEQVEEMIEWFKAWKNENHTVRDYRNYFKPVLCYLEGTWTKSTPNIDEPFDSDRHFVDASSWFELQEKIRFTSYTGRKDNLENFAYLPTTIIEGNETTTVFAQWNYRILCHPLKDYLPVNRLRVVDDLAARLSRKRTVEKHAQTRAARFQVNLKNDGRWRDIKEKTGTLSLLDKLMSEIPGKDNYPANITDGVLGQEAYSLDLEQGGQKLNAGYYHRRYKVLEKGAMGIQTRHRGFSDPNLFVAMTTQENVAGLKLNVCKGPDRNKTCTQNDQKVSYAIPLEIIYLTPLNNWNPHNLTYKGDERLDHGKTVTADGRNGGKTKTKAYDGVNSKIYYITPNRFFTGNETNVDAADTTKDLVGVLDPTGEVRQVRASGVRIFLPDIPGVGILRQRYPIMPIHVEGSTAWKEIQAVGDFLMESKKHANLFRDPLSGQDGGQYPPEVNTDTDLRTGSSTNLTKVGRHRHEVILDKDEVTIIKSGGNVTVVTTENSGHQHTVTIKWHKKKGFYMALCDSTEITRPFAVKCWDKHSARMAAVPNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FR72</accession>
    <name>A0A6S7FR72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110052565</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007121</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000013">
        <property type="protein sequence ID" value="CAB3976791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FR72"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17483" checksum="3D2230F339B3330D" modified="2020-12-02" version="1">MADLQDQELTHVEIARVIRDIAGVNNENVDLMKLRLDYVNRMSVTLALPEQVINALSLVYQQLDRMSERMVESRDVDVQYSPSVICSGRGRPRISISQEQLSFLVDQGFTVKEMSSILGVGQHTVERRLAAFNLSIKATYSNINDEDLDELVNAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSE3</accession>
    <name>A0A6S7FSE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012644</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000251">
        <property type="protein sequence ID" value="CAB3980023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSE3"/>
    <dbReference type="OrthoDB" id="5983950at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22490" checksum="4C9723C1E6B05055" modified="2020-12-02" version="1">MMRYYASRSQLPWQQQKDIKLSGINHGGLGLIQAVPDNFDADISSQNGKMSTHSLAMLITQPSNASDDDQSTRESIPRMKKSEMSKDTDFEIPVQRYQGPKVVPMPKKCSKKSALPLKVLCGAILSERRAKVLDLAFLRDVTNTEAWPEYNGYNTRMTRQQGVSMQPKTKAVYLPLIDMTPSDPDTIMTALHEAKRLSKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZ77</accession>
    <name>A0A6S7FZ77_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">COR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A064595</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000361">
        <property type="protein sequence ID" value="CAB3981186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZ77"/>
    <dbReference type="OrthoDB" id="120976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032171">
        <property type="entry name" value="COR-A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47679">
        <property type="entry name" value="PROTEIN TORNADO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47679:SF1">
        <property type="entry name" value="PROTEIN TORNADO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16095">
        <property type="entry name" value="COR-A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="COR" evidence="2">
        <location>
            <begin position="249"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="605" mass="69840" checksum="8FB4F662A44BFDD1" modified="2020-12-02" version="1">MTSESEAKTVLHKKIAEYIHTGVQRNLEGDAPETLKPVMPVKPLSREEISEIKSQRSTEHNQKKVIRVFVSDFAGQSIYYDTHGCFVKPHCPYVLVYDLSLEFDKPTVPRFKASYEEEEMEMNNPHLNTNLDNFTSWLKFLQGLGECQDQQFPDKSGDCTTAKGENFKRPPILIALTHSDKVKGDDSKIRSVQNRINKVLFEGKYENVDPMFFLIDNSLEGDDGDDVRKLRRKLFDLSNAVLNQEILMPVKWLDFEAALSRKLSPDCKYIPVEEAKKEAEACGVGEFNQAIKFLHRQGVVVHHSGSSKVVLDPHWLMNRFTKVISMPGTLDALSRYTLDVFKQKGILFREYLQKLEDAELLEELMQKFNLICPCQHERKAAFYVPSVAPTMIPGKELEASNVPSLFVTFPRKLVPMGLFTKLQVRLISEWENCFHQQQVTPSFYCNYSLLPLIIDGGVYDVYLIDLHEFIKVAVFPKHDGNHFKFASHLLGTLQKCLDDLKSPDQLLFSMTSYDFEVKCTGCFGKEERKCSRHHEIQCHSDRCGHRHFWKLSELQRLYNNQSFVYVCQSNKHSSETFDIKSVKIWLNTGEWLMLKEFLLCQFQIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G1J2</accession>
    <name>A0A6S7G1J2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027586</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000888">
        <property type="protein sequence ID" value="CAB3985585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G1J2"/>
    <dbReference type="OrthoDB" id="8196265at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF14">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="32776" checksum="174B2D4A0F6D1A74" modified="2020-12-02" version="1">MANNIEIPSPGETRWYYRARTIDVIFKNYQHLHGILKKVNDNPFGWDDDSISLIVGLLGHLDRFSFYFLLCLFYRIFEQSSILYAILQGRETDFNYGMRKVENFKSFLGSIRNDVEFDMNYQKAVDEAGSPVTRIDLNVNYKQLYFQILDTIVGMLNERFKDIQSFGFLDLVNPKLFRNWGGKVPSDKIDLLKESLPEVVKLLKMNGVFSLTSASVERSFSCLKRVKTYLRATMTQDHLSSLCRISIHKDILKSKKDAHTLHEQVLVKFAEKPRRLAFLYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3N4</accession>
    <name>A0A6S7G3N4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000289">
        <property type="protein sequence ID" value="CAB3980430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3N4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="18147" checksum="7DF07F9278A481F3" modified="2020-12-02" version="1">MCENFKKIDAEITETGYDYFDNWADVRYNVTTQEELGDFMLMYIVQKKIHKKTEFSPYLAEDEWVEKSKPVVNEYAYFYAFDMLDDLSILYRFENLLDDVYGKRKREYLQPEKLKMLYELYVDYIRNGARANERIYKFVDEMLEDAESE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEH5</accession>
    <name>A0A6S7GEH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Zinc finger 271-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A034781</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be involved in transcriptional regulation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the krueppel C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001127">
        <property type="protein sequence ID" value="CAB3987156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEH5"/>
    <dbReference type="OrthoDB" id="5949735at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:001732">
        <property type="entry name" value="Zgc:162936"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:001792">
        <property type="entry name" value="Zinc finger and BTB domain-containing 40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000744">
        <property type="entry name" value="zinc finger E-box-binding homeobox 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:001289">
        <property type="entry name" value="Zinc finger protein 574"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050331">
        <property type="entry name" value="Zinc_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16515:SF66">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16515">
        <property type="entry name" value="PR DOMAIN ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-0539">Nucleus</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="12" id="KW-0804">Transcription</keyword>
    <keyword evidence="10" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="9" id="KW-0832">Ubl conjugation</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3987156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="24080" checksum="665CED17A62E9652" modified="2020-12-02" version="1">MAFARPRCLVRHKTIHAEDKAYQCDICPKSFARSDNLAAHKRTHSTERPFTCDICSKSFKDSSYLINHKKTHAGEKPYSCDICQKPFSYKTVLRVHIRSQHTGERPFQCGICKKAFYKRQTMGRHMKTHTGEKNYQCDSCGKQFTRSTALKSHKPTDIGGKHYECDMCFITFMRKACLQHHKKEHACKTEYKHHKTTHYMIIKVCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIE5</accession>
    <name>A0A6S7GIE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Fibropellin-3-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A030053</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000802">
        <property type="protein sequence ID" value="CAB3984930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIE5"/>
    <dbReference type="OrthoDB" id="5959512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000004">
        <property type="entry name" value="Neurogenic locus notch 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000173">
        <property type="entry name" value="Neurogenic locus notch protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000309">
        <property type="entry name" value="Uncharacterized protein, isoform A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12916">
        <property type="entry name" value="CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12916:SF4">
        <property type="entry name" value="UNINFLATABLE, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00231">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 8" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="671"/>
            <end position="758"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="676"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="688"/>
            <end position="758"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="651"/>
            <end position="660"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="787"/>
            <end position="796"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="825"/>
            <end position="834"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="841"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3984930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="841" mass="93748" checksum="E4B095672D1C0766" modified="2020-12-02" version="1" fragment="single">KAPSFRSPEESMSCLKPKAACESQLQLHESYFSASSFQKPSYNSLGDSPHHANFAHNLVWTPADTEDIHQYLQIEFNQLMHITKVAFQSHEFVGNNDCTTVKLNILKVPIDAKFLRIVPKLWKDKIALKVQLFGCPVHQVPAGYQPLGISSGRVEDNKITVLSGNEHTYKPYHARLDFVTHTGGWCTQSNSIQILAVDLEDNYVIAGIAVQSKYQTTDKLIKRFQIAYKKNGGPKTYIKVNSAIKTFLGNPVEDTTIRHKFLETILARHVYFEPKKLSNTGCLRLELYGYKEDDEYISDYCTIFDFEGDLSLMQWNRTGSAFDNQPTFLDNLHARTGQAVNHEGERWIGTRENRRRPSDIPGGTQGNYPTGTLISPGFIISASKLFFLFAGTADQAKSRVELLVDGLAARTAFSETGNESLVPMSWDVKGLVGKEAQIRIVDSGSDAFVSFDGLKSNCHLREELLPIFERSFLLNRLNNTLYLCHSFHLSNREDPVCRLTFDNGRTWRDLSHVAGLLGINEVTGELYGVSMDRRDRLVNTNWIGRGAWSEVEDSEWDKIKGSLNKMVEIPNVPVTGLLETDRHLPVLTLIANSGDRFSASSLGVYHLPPGGYWSIIATWRCKEYPDVCVSSPCNNAGVCHVTSDGGYNCTCPLGYTGDICDHVFKRQRDNNIVNNDNDDNNNNENDDNINNSNSNSNSNNSSSSDNSNSNSNSNNNNNNNNNNNNNNNNNNNNNNSNSNSNNSNNDNDNDNSNNNNNNQSDIDDCSSLPCSPGSACIDGLGNFTCQCPPGFVGEFCQMETDECASRPCQHDGHCVDHVNSYSCHCRQGYSGINCEHGRFKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIM9</accession>
    <name>A0A6S7GIM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Proto-oncogene vav-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001918">
        <property type="protein sequence ID" value="CAB3991798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIM9"/>
    <dbReference type="OrthoDB" id="5340910at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016477">
        <property type="term" value="P:cell migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd21201">
        <property type="entry name" value="CH_VAV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.900.10">
        <property type="entry name" value="Dbl homology (DH) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035899">
        <property type="entry name" value="DBL_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000219">
        <property type="entry name" value="DH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45818">
        <property type="entry name" value="PROTEIN VAV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45818:SF3">
        <property type="entry name" value="PROTEIN VAV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00621">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00033">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48065">
        <property type="entry name" value="DBL homology domain (DH-domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50010">
        <property type="entry name" value="DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="32895" checksum="367BF4A69D28DC90" modified="2020-12-02" version="1" fragment="single">MAGRKISQSNQELWLMAKNWLASTNVLPQGHRCYDPNPAIFDLAHSLRDGVALCQVANCLRPYSVRDINFKPQMSPFLCLKNIRGFLHACVNNFGLKESVLFDAHELYDVSDFAKVVVTLSQLSKCKDALNAGLIPFPSDRAASLSTQYKDEDIYGNLEEIALTKDVAEENVYDAVTIEDDTKIYDDVVALKKRIGLYKSQNAHTSKADEKRGYVIDELLGTEENYVEALTTIKEKFIDQLQDVLAAEDIKKIFVNIVDLLVMHKQFLSKLRVACRHKTDVGSSISNCFIHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GK80</accession>
    <name>A0A6S7GK80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107328519</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040849</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001932">
        <property type="protein sequence ID" value="CAB3991873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GK80"/>
    <dbReference type="OrthoDB" id="5965426at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="42"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30845" checksum="24D0B29F6F211196" modified="2020-12-02" version="1">MTTTGCNQVSTCQFHDHLCQNGESYVPLTPTDHTTLRYKCQCLTGYTGRLCQHAIKSCRAYSNGSRVPGNYQVLDDNMKPYEVFCDFDSSLNKVWTLVSSYQLRNKDNFDEAYFKDWPVNENTSRWDEYRLSKPRMQSVQDDSSKFRVTCKYDTDGLNYTDYLEAKKEHIDILNFEYRHTHIPVVCSLVDYVNIRGDDCAFCTMILYQDSYTLHGDSSKTDGCDFNSTGAEKCGGPGEDNFGHYGCVNPAHRCSSSADATTQLWFGADWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GU70</accession>
    <name>A0A6S7GU70_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="2">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A065982</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020002302">
        <property type="protein sequence ID" value="CAB3993649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GU70"/>
    <dbReference type="OrthoDB" id="411372at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000209">
        <property type="term" value="P:protein polyubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1350">
        <property type="entry name" value="Pneumovirus matrix protein 2 (M2), zinc-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1000.10">
        <property type="entry name" value="Zinc finger, CCCH-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045072">
        <property type="entry name" value="MKRN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041367">
        <property type="entry name" value="Znf-CCCH_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000571">
        <property type="entry name" value="Znf_CCCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036855">
        <property type="entry name" value="Znf_CCCH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11224:SF10">
        <property type="entry name" value="IP09428P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11224">
        <property type="entry name" value="MAKORIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05142">
        <property type="entry name" value="DUF702"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18044">
        <property type="entry name" value="zf-CCCH_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00356">
        <property type="entry name" value="ZnF_C3H1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90229">
        <property type="entry name" value="CCCH zinc finger"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50103">
        <property type="entry name" value="ZF_C3H1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="C3H1-type" evidence="7">
        <location>
            <begin position="15"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="C3H1-type" evidence="7">
        <location>
            <begin position="41"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3993649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="677" mass="76291" checksum="F8756CB1621EBF09" modified="2020-12-02" version="1">MAESKQLQLEKKDPEKRKISCRYFVRGSCREGNKCSYSHDRSDIPVCRYFEEGTCYYGDKCWFRHPEEFNISSRFDDYLVPSESFFSLGNVFSTCAEPPPLSNINLLMAAAISSAWSDANNNETECETPKAPISIEKAMEMWKIITDGEDPEKSQDSNKSVDDSCESALDDISLYFSKLGKFDIKNWPCSDVIDLLCLVADFDDVEFTSHDLSNDLFVGNVLFELMRIWKPSSSTTSEFFNTLCELKQIDMTQLIICLVSCPCRLDDFDCFLGEVLYHLQQKNPNTWNGEWVADLLDKFEGNLECCDVDAVDVLSSFGSLSKNPGELGKMAHAYLVKTGLQNSFECRCKTADCLCPIEVDEGVAFILFDGLTRRLKWTNNEKKDFFCKAVDKLFLPGVLFQLGESMGLKNIANESNCREEPIINKANGLPQSKCPSADCSNNAKRDCVNGLCGRCCKRSGLWCDVHVNLFPTRYQTVRAHDLVKPRVNLATKGDLDCFLETKEDARAVCFGRDFSVNDDDVIKVLDLCKNIMLLELGSSDTGKPGRLVTDALLHYIAQNRPKLRKLRLESATSIADDSVIQLLKHCHDLEFLEVSGNDKISGELTDRTLKEFFDVNVAPNLKTLRVTDQRGISYDIVMRLRRCRPNLEITAGDTDSDSMAWSLILGMTGGWYGDGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H150</accession>
    <name>A0A6S7H150_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020442</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003315">
        <property type="protein sequence ID" value="CAB3998283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H150"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="565" mass="64991" checksum="A027F5A98C1B079E" modified="2020-12-02" version="1">MKAQPSPSKPDNLHIWKRDLRDSRIRPFGRYITTFDWSPILDIHDCDTKYEKFNDTMTVMIEKFFPLEQIKVRKCDKPWMTSSIKFAIGRRQKALHESGKNSDIYKYWGNRVQSSIRVARKIYYMRSVEKLKNSNQARWWKEVKAIGGLSSKNSWYSQLFSDDVRNCEELAENFDNFLTALTSHFDPLTLDEIQEGLEVPNHYLVDAQQIYRKLSKIKTTKSPGPDMFPNKILKKFAFELAPVISDIFNSSMTQGTFPKALKRSIVVPVPKVSPPKSIEDDLRPIYLTSQVAKVMEDCTLDNFFPEVVNKLDTKQYALPKKSTTHALVYLLHSILVALERGSCTARLFFADFKKGFDLVDHNVIIKELTLLGTHPSIIRWIKAFLCDREQCVRVGTSMSSWKKTNGGLPQGTKLGPLLFAVLINSLLKNWPGRIKFVDDTSALEIIPRFSPSLMPLVVNEISDYALERGMELNYKKCKQMLINFLKYKGSYDENPIYVAGKPVETVSSFKLLGVWISNDLSWNTHVDMILKKANSRLIRIASVKKGWSSSISHRPNIYLIHQIQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9C6</accession>
    <name>A0A6S7H9C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050149</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003639">
        <property type="protein sequence ID" value="CAB3999653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9C6"/>
    <dbReference type="OrthoDB" id="6118485at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF28">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="265"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="347" mass="39587" checksum="CE817272D21D4FFC" modified="2020-12-02" version="1" fragment="single">LEDLRNEFDVIVENYERTSERFSLEESYDRAVYIDALFALLYRYVQPKSSASYPSAGINRNLAEDVLNANFAIETSIQVEIKNKIFLHVCKSYDRCDTSFRNTIRILEIVGKLEDYERGYGAISYNSTKFCSRGYVHFPPGRHYKVILSDEFRVWERCIRTMETLQISSGNLGIKTYRSVTSITKPWPLGAEDIYEVVRLTVLSGHSLKIGPAIGTGRTNKFEQYTQIFSKFARRNCMGIPDEIETRGVNLPPPLTYPAKFREEAARETGHSGEHPDPAKVESILDMPAPTDTKGLKRFLGMVNYLAKFLPLLSDMTEPLRRLEGSSCNEDWTPDLLSLSLFNTDPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HE74</accession>
    <name>A0A6S7HE74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066696</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004405">
        <property type="protein sequence ID" value="CAB4002636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HE74"/>
    <dbReference type="OrthoDB" id="6134204at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20623" checksum="9865BE8CFAA1B57D" modified="2020-12-02" version="1">MEEDICSCIIHTCEISNNVSPVKDFTAVTLSKFLSSRKIWLSLNGNLTDVAVKSLEYFSDHDEQAFINEGTVPDRSLQYHIECYRKFTDKTRINRAQRMSETSDTPCTSKDIEPAAKKTRAEETRQTRNRLQPHGSTATGSRSTPVLPRICLICKKAELTYTCPVSQKLKLLHFFVKSMKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HF55</accession>
    <name>A0A6S7HF55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acyl- synthetase family member 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004182">
        <property type="protein sequence ID" value="CAB4001793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HF55"/>
    <dbReference type="OrthoDB" id="408177at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043041">
        <property type="term" value="P:amino acid activation for nonribosomal peptide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052091">
        <property type="entry name" value="Beta-ala_Activ/Resist"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44394">
        <property type="entry name" value="BETA-ALANINE-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44394:SF1">
        <property type="entry name" value="BETA-ALANINE-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="23125" checksum="E679BEC9EFE9EAE6" modified="2020-12-02" version="1">MAAERSGINVLHGLFFRSAKNFPNNIAVTFSGDAVESITYRDLSKKVENLSTCFSKIFSKNEVIGIYSSDCLNLPALLLAVMDASAAFYPISTTLQPRKVLESINHRSIRYVLVDNGLLQNIMNLNENDHDNTFIRMPLEITDRNSLHEVRFTVLKVTTRNQPCVVNWSKDLAYAMQTSGTTGDPKAVFVPHSCIVSNIFHLRWAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIG0</accession>
    <name>A0A6S7HIG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002620">
        <property type="protein sequence ID" value="CAB3995211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIG0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15258" checksum="29CEC8269D093DC8" modified="2020-12-02" version="1" fragment="single">QQNADGPVLSSFVNCSQINPFDWDLVEMTRYKEEKCFIYDGKRIKWVDSFEILKIFIKCVICQSGKWLSSGGKYKNSKFTSSNTDLILTWNSDLGMLSFKGKVGDSLENLLIKMSTAKESTQTNTSGCSTLEELQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIU7</accession>
    <name>A0A6S7HIU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="19">Adhesion G -coupled receptor L3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A017304</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004659">
        <property type="protein sequence ID" value="CAB4003547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIU7"/>
    <dbReference type="OrthoDB" id="5958263at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007189">
        <property type="term" value="P:adenylate cyclase-activating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="FN3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1240.10">
        <property type="entry name" value="GPCR, family 2, extracellular hormone receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="AGRL2-4_GAIN_subdom_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057244">
        <property type="entry name" value="GAIN_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046338">
        <property type="entry name" value="GAIN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036445">
        <property type="entry name" value="GPCR_2_extracell_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001879">
        <property type="entry name" value="GPCR_2_extracellular_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000203">
        <property type="entry name" value="GPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011">
        <property type="entry name" value="ADHESION G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011:SF471">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTORS FAMILY 2 PROFILE 2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16489">
        <property type="entry name" value="GAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01825">
        <property type="entry name" value="GPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00303">
        <property type="entry name" value="GPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00008">
        <property type="entry name" value="HormR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50227">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50221">
        <property type="entry name" value="GAIN_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3 13" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="8" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11 19" id="KW-0675">Receptor</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="12" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Fibronectin type-III" evidence="18">
        <location>
            <begin position="201"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="18">
        <location>
            <begin position="298"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="18">
        <location>
            <begin position="486"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="18">
        <location>
            <begin position="582"/>
            <end position="673"/>
        </location>
    </feature>
    <feature type="domain" description="EGF-like" evidence="14">
        <location>
            <begin position="672"/>
            <end position="712"/>
        </location>
    </feature>
    <feature type="domain" description="G-protein coupled receptors family 2 profile 1" evidence="16">
        <location>
            <begin position="699"/>
            <end position="781"/>
        </location>
    </feature>
    <feature type="domain" description="GAIN-B" evidence="15">
        <location>
            <begin position="915"/>
            <end position="1067"/>
        </location>
    </feature>
    <feature type="domain" description="G-protein coupled receptors family 2 profile 2" evidence="17">
        <location>
            <begin position="1076"/>
            <end position="1213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB4003547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1213" mass="138006" checksum="2FE3856CA100AB07" modified="2020-12-02" version="1">MKNRKWKCNFPVQPGSWFYLTVTWSNRSGLRMFKNGVLMSEQSKFKRKARVFRYGDEKCAVTLSPPTAQGTTLNADYDDLVIWYYELNKTFMYQVYRNSIDLPKIVDCKTNGTSLDIVIEDKYQIYDVKRDFKITWWRSGGDQRETRFAKGLSFSIPGLVQDSEYIVEIQRRMFVSASSKQTLVAVLSKPSKSTCSTKPYVPTRPKKFKVREKAGEYLMLQWQSPDIIYGSILGYKISYRVDDFKTPVEWKDTFRTNVKTAHLNNLKPFTDYIIKLSCRNENGSSKAITLRATTAEGVPTRPRRFKVKLKGEAVVIKWREPEKLNGLVHYRLFALVNGTKRTICSACGEWYKLEDVEQYTNYTFWVIAYNTNNDPRYESGPSENATIITPSYTPTSPRNLTVSFTQSGINVLWERSSDPRGRIEYKLLGFVNASKRIFCDECGLHYLMEDVGRYTVYTFWVVAYNVHKGYESQSTDKVTIDTASYVPTIPGELRVNVILEGILISWNKSHVPHGSIRYQLMGLENGLKREFCSDCGLRYLINKTKPNMNYSFWVVAHNIQNGYESLPSSVVRFYTVRIKPSPPEHILAPDVSDSSAKIAWTPPGKLSEKEEIIGYKVTLYDAFSVLQIKKTRSLQLKFTNLTQFSKYYVTVEVLSRVGYGPPSQQLIIHTKDANECAMNDVPCGEHAQCINSAGSYFCSCASGYVGDGIFCQGLPSGVKEADFCPEESARNTTWKKTYRGHTDKKLCPNGTIGISTRECLKGNGSRSYWSDPNLSNCVSAWMSEVDDKLADRTLNSTAVGDFFLKLLDNNDGRGLYGGDIIKSVNVIDLLYNKSKDNELDKEKSNPKVAETLLMNLINITEKIISPEKLKVWTDIPKGRRTEHSVKIMDGLDNAVLKSAKIVKFSSIQNEHINVRYGKVSSFKLRNNMSSLERDLDDMESIKLPQREKDKDIEDRVVAIIKYNTIAEVLSAGGKESNDEGVVNSAVLSISMNPPLSTPFQKPLEFKLSNQKDGKFDEHECVFLDTSRYPGFWSKNGCNVFNVTDNFTVCHCNHMTSFSVLMQVKPAELSYSDELILSWITRVGLYISLISLGLAFITFVFLPRPCGSKSGSRCFKLCEQGYRPTYLKKVRSGIHANLILSLALAEALFLWGIEKTHHKTTCYTVAVALHYLFLVAFHWMAAEGVILYLVLVKVFQRKSARKDKRMFMIICWGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVG5</accession>
    <name>A0A6S7HVG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041722</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005784">
        <property type="protein sequence ID" value="CAB4007390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVG5"/>
    <dbReference type="OrthoDB" id="10221010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="13582" checksum="BF9E8C2499C20049" modified="2020-12-02" version="1">MTDTKKEVINELYDAALLTTGVVGVSYLAKTVSGKSLGAPMTLEGAAKLAVAVAGSAFTIGYLKDKGGLFNAVSFAGSGFLFSKLNGQGYKEEVKRHNQALEKLAKAKEIEVLRIRGKAEERRGKTEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I201</accession>
    <name>A0A6S7I201_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A024698</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007254">
        <property type="protein sequence ID" value="CAB4011746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I201"/>
    <dbReference type="OrthoDB" id="1292175at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="2">
        <location>
            <begin position="3"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="299"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4011746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="338" mass="37262" checksum="614380384FC2F3C1" modified="2020-12-02" version="1">MEVNEKITNDIKDAGVFSIMADTTPDVSHKDQMSVICRYVDHDGAVHERLLDLKEVREKTGEGQATAIIQSVDQNGLDNKSIAFQSYDFTNTRAESLRAMWISYEAVIEVLRKISNDGSVDAKGKAAATGLLAKVLRVDVVVSLMFMRIILWKTKVLTESLQKEDLNIVDALEALDGTVKSLQDIRKDDEGIANQIQASTEVLSGKDVDAAGEFAKLQYKGNINASLEKVKALSIVLQPPLSSHHVEKDVKDLLNLFPLQAPDQAAFTAEFEVFVNVAMNEGNTNPIQSLADAAKEAEKRKHIFPLTSQVYRLALTSPVTVAGNERTFSKLKTENRFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4F9</accession>
    <name>A0A6S7I4F9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Mitogen-activated kinase kinase kinase 4-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A042246</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006883">
        <property type="protein sequence ID" value="CAB4010730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4F9"/>
    <dbReference type="OrthoDB" id="6021930at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004709">
        <property type="term" value="F:MAP kinase kinase kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033554">
        <property type="term" value="P:cellular response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11584:SF394">
        <property type="entry name" value="APOPTOTIC SIGNAL-REGULATING KINASE 1, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11584">
        <property type="entry name" value="SERINE/THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4010730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="530" mass="59194" checksum="6949367F478EEA69" modified="2020-12-02" version="1">MLPYHYQITFHPNDHSAFQDLADEIKAFEGLTHDSLVKYYGCEVHRDVMYIFMEYCGDGTISDVSKLGLPEAMIRKYADQLLIAVEFLHDRGIVHRDIKGPNIFLSSEGLIKLGDFGASVKLVNPSQTMCGEVSALRGTIAYMAPEVITLDKGAGYGRAADIWSVGCVVVEMATGKGCPRKTKGVTLTDKESLVSILEGFSDSISTLYISNCKSTKEINRKTWSFYSLRIRFPDLVSCVDENYEVIIVLHDVLVVLSFLTNPILLFIIIKTLGKSSGKNSGILLSSICLTNIFVTSFGVIKIFGGSAIDYGIMTRVMSIFLPMYYFATFCLALNHYGLIVTPLKFQTSSPKPKTMVGILGIVWITMTLVLVVAPSLASDFDLYVKVTITTVVALCWLASIIIAIMYTRILLTLYQRKLTLHRTLNMSRSRQGLVVIKQNTKLAKVLSFYTLVLVVLTLPLYTSVILALHCSKCDTPAMMKFTLYCLPPGMSMPIIHVFHWLSATPQYYREVKRLIKKVFALLWEERVTSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5H1</accession>
    <name>A0A6S7I5H1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CWF19 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088203</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007421">
        <property type="protein sequence ID" value="CAB4012199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5H1"/>
    <dbReference type="OrthoDB" id="444325at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071014">
        <property type="term" value="C:post-mRNA release spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061632">
        <property type="term" value="F:RNA lariat debranching enzyme activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040194">
        <property type="entry name" value="Cwf19-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006768">
        <property type="entry name" value="Cwf19-like_C_dom-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12072">
        <property type="entry name" value="CWF19, CELL CYCLE CONTROL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12072:SF4">
        <property type="entry name" value="CWF19-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04677">
        <property type="entry name" value="CwfJ_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12317" checksum="193BB098A0F49582" modified="2020-12-02" version="1" fragment="single">KANKVLKLNLQQNSGQNFFFDLDSKSGGQKRKNDDGNQRQPTKRKGPPPIQGPCWFCLGGSQVEKHLVVSVADHVYLAMAKGGLTPDHTLICPIAHYPSTVELPDPSVITHSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I902</accession>
    <name>A0A6S7I902_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086338</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007513">
        <property type="protein sequence ID" value="CAB4012450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I902"/>
    <dbReference type="OrthoDB" id="5958355at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="726" mass="83062" checksum="A74CE12ACFAB5868" modified="2020-12-02" version="1">MLGENNYNWFAFVEELNMMLCNDTREQLNQALNDFITFLPSTDLSSEKQILVEQSYKAFLITDGRRAWGESCIQSDSESDDPENWVDVGEGLTEKMKSLQFLNLGKDIDDFVHENRIGADAWRRTGVATFDGNVKSGPRVTYRKIKEHLESKYQRKFSYGAIVQLSVVRNKRHKSSKRYWGAAQITCRRARKGFNIKLNPDAHWSAAFYRGLDKIQFEDGRDKCTINRDDAAGFRLDTTFTHKQHKSISSKSNPEMTTRTDYVNKYSSVLQVTSYLIPATKTTPQHSAGLVKAHILYPKDPSQHAADLVMLENDPDYKSCLKNKPIDCIRVDGAGDEGPIHAEVQFLWTERHLEQEKVCTLVTTRSSGSSYLNRVELQNGCLAVAHSNIFIPSTIHGSNFARSGSIDYDRLEQNLESATDVYMSKCNNAAFGESSIRLLNGSRNDLAKNYQNRRPHLITFLSGTKKKKKELMKENPTLFEYFTKIWKLRDSHMVKGLPSYYIFQLLPCYEKECVHPVCKRGRPQEELAWSKGSPPLSYLPIPIPDPKRSWGQPCKQCKGFCTGHYLMPDDHLEYVTKHGTDKCIYSPPKDQLRNAAKSKLEKNEDWTEDDYQCMCKNVLLSTDDAHIWTAHVKLTAERRKAGAKKAAATRARKRIVDKVAEGDDCGGGELWCCCRDTEHGFMIQCDIQGPHCFIWYHGPCVKISKKKGREMEEKNILFIFYNCSRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICE5</accession>
    <name>A0A6S7ICE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Probable serine threonine- kinase DDB_G0271682</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A072525</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008038">
        <property type="protein sequence ID" value="CAB4013830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICE5"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097527">
        <property type="term" value="P:necroptotic signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051681">
        <property type="entry name" value="Ser/Thr_Kinases-Pseudokinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329:SF298">
        <property type="entry name" value="MIXED LINEAGE KINASE DOMAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="394" mass="45912" checksum="F02AA845DB327990" modified="2020-12-02" version="1" fragment="single">MSRYRTINQCEEEVTQRQKLQRKKKDPGPIAHKKLMDCIKVDSESFDPLRHDNSKTIKALIQRLEQENTNNNNEIQQLRQETFNKINEIQQLREENISMNREKQQVQQENADLRIEIQHLQETTILENFNKNEIQQLRKKKSKRRNEMYEIVNTNNEIQRLPGENLNINNEILELRRENANMSRRNQKVQKENDHLRIEIEQLSKEILGRGGWGTVYIGDFYGPKVAVKEFQEIILSPHYEEILGREIKIASQCRHPNLLQFICATENDQHHLLIVTKLMDMTLRTLLEQRAREKSGMEYQEIKSISLDVARGLNYLHSKKPSPVIHRDVSSANVLLWIENGAVRRAKVSDYGSANFMQKCNTANPGAALYAAPEASRAEHDAKVIIIKATCTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKW9</accession>
    <name>A0A6S7IKW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014809</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PIH1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009798">
        <property type="protein sequence ID" value="CAB4017983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKW9"/>
    <dbReference type="OrthoDB" id="546764at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050734">
        <property type="entry name" value="PIH1/Kintoun_subfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012981">
        <property type="entry name" value="PIH1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22997">
        <property type="entry name" value="PIH1 DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22997:SF3">
        <property type="entry name" value="PROTEIN KINTOUN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08190">
        <property type="entry name" value="PIH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16370" checksum="488729375082A918" modified="2020-12-02" version="1" fragment="single">MAKQESQLNMTEEEMERFEKAMKSEEFRKMFAEYAKEISDPENRKKYEEEIAQLEAERGMDVKFINPQDGFVVKTSIKSKDGMKAFINICQSDVINKATCKEGSKKVDEKNVKGQEWLIPYSLSQPREDLDKVDESAGHSCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INW0</accession>
    <name>A0A6S7INW0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080216</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010134">
        <property type="protein sequence ID" value="CAB4018709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INW0"/>
    <dbReference type="OrthoDB" id="1668162at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="152"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="28151" checksum="1E1D9C4B746A2604" modified="2020-12-02" version="1">MLTPRTRLLTLRRRDKVPDTEDKLLDAEDKVSNAEEKVRDTEDKAPDAEDKLPDAEDKVPDAEDKVPDDEDKVLDAEDKLSNAEEKVRDAVDKARDAEDKDKVPDAEDKVPDAEDKILDAEDAEDKAPDAEGKAPDARTRFLMRGQGQIPAAEDKVSNAEEKDVDAEDKAPDAEEKDADDKVPDAEDKVLDAEDKVPDAEDKLPDAEDKVPDAEDKVPDARTRFLTEDKVPDAEDKVPDARTRFLTRGQGSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVK4</accession>
    <name>A0A6S7IVK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024292</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005307">
        <property type="protein sequence ID" value="CAB4005758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVK4"/>
    <dbReference type="OrthoDB" id="5965207at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="247"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="247"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="270"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="293" mass="34139" checksum="F14070F48CD0F3D3" modified="2020-12-02" version="1">MRSHWTTDLDIETLESRRSWASLAEFQTVIPFHIPRYKIILDECKNKSPVVSATNLTFATRFLAVFIFYKVKGCRPMTYLHLTVSMFDSAKRNKGMVDQTTFKTAKKYGFDSLYFDEISLDVVDNYVGYVRPLLQPRCDYLLVNRNAIQFQKLTEILSILVFQAIGKYVHPTRYRQIIETESVQILNVEEQKLVSEDQKHSSNVARVHYQKLRSRDVAIKGRTCMEKLRGLHGAEMDTCVEQLKQEHCSEHKSKSDNETTPIPQTTTEKVSAEKRKPLRFTKEEDQFIERGIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYQ5</accession>
    <name>A0A6S7IYQ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Tyramine receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A082857</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013113">
        <property type="protein sequence ID" value="CAB4024576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYQ5"/>
    <dbReference type="OrthoDB" id="5967894at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050125">
        <property type="entry name" value="GPCR_opsins"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24240">
        <property type="entry name" value="OPSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0807">Transducer</keyword>
    <keyword evidence="2 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="66"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="113"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="204"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="266"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="296"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="237"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="250"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4024576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="38071" checksum="800C60524C26E45E" modified="2020-12-02" version="1">MYWHFFHTPTTVSESKNNVNVDTTKIEIISQSMTASCIAFLCLLTMLVNIWVCYKIYSKRSLRSSCTALIVANVALVDILVSIKDLPFLLSVALSSKWYFEIEWCRSYGLTNVVYIIVSVSTLVSIATDRYIVTRENNRVQLDQSGQYPMPGQSSYSPAPYKVALLGYVVAQTTLSYSLTLLWSKYAFLSRKAFCQVEFSSTGFPISIVVSFLFLIPIATLTFSMLNSISGEKKQTVELKSNSGNKDESTSETEDQMSEEEGQIHCHLQAAIGIFLLSWCSYVFDSFFPSPESPSIPGVVSAFIPIMTTSLVPLFFVLTHKVRLPNTYDSSKLESAYRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J0F3</accession>
    <name>A0A6S7J0F3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A007526</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the tectonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013516">
        <property type="protein sequence ID" value="CAB4025276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J0F3"/>
    <dbReference type="OrthoDB" id="166585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006624">
        <property type="entry name" value="Beta-propeller_rpt_TECPR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051513">
        <property type="entry name" value="Tectonin_beta-prop"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23250">
        <property type="entry name" value="DYSFERLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23250:SF3">
        <property type="entry name" value="FISH-EGG LECTIN-LIKE ISOFORM X1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19193">
        <property type="entry name" value="Tectonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00706">
        <property type="entry name" value="TECPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="RCC1/BLIP-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00038331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4025276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="27944" checksum="60093FC3F3819F42" modified="2020-12-02" version="1" fragment="single">NMSRVFIKDSPAMLSGVMKQVESGNETWGVTDDQKVWVLRNDMWQTLGPDKMNYVSVGKAGVWALDVLNDVFVRKGIDTQNPFGTGWTLVSSPSQKLVQIDSGSSGVVYGVTRENQIYCRAGITQQTLSGTSWVNVYGTAKHVSCGDYGCWAVRPDNTVGFRQGVTVQNCAGTEWNDLSGKTDMAQLDSGATGAVYAISMNHTLYRLNGICWKLPWGTKNWKEVIPHPFKHVTIGDTHTYIVADNGTVWKFSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JDC5</accession>
    <name>A0A6S7JDC5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A060800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008504">
        <property type="protein sequence ID" value="CAB4014931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JDC5"/>
    <dbReference type="OrthoDB" id="5986604at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="10"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="2">
        <location>
            <begin position="251"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="360" mass="40954" checksum="C34DDF97EE86EAF5" modified="2020-12-02" version="1">MLESNYQWNWTDQCEEAFCKVKAMIVSDLVLTHYDPNLPLQLACDASPVGIGAVLSHVMTDGTERPIAFASRSLSKAERNYAQIDKEALATVWGVKKFHNYLFGRNFTLLTDHEPLTSIFHPSKSLPVVTAARLQRYALFLAGFDYTIRYKNTKLHGNADGLSRLPLHSETTEEEPDPVGLFYATQFEPLPVTAEQVKRETQRDPLLVKVHELVMKGWSTPKDEAIKPFYQRKDELTVYCGVLMLGHRAVIPAKLRNQVLTELHEGHLGIVKMKSLARSYIWWPKIDKDIEHLAKSCPGSQLQQNEAGKVPLHPWEWPTTPWQRIHLDFAGPFLGQMFLIIVDAHSKWPEVEIMPSTTST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JN85</accession>
    <name>A0A6S7JN85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037148</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017708">
        <property type="protein sequence ID" value="CAB4031534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JN85"/>
    <dbReference type="OrthoDB" id="10292524at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF9">
        <property type="entry name" value="ZINC FINGER PROTEIN 862"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20630" checksum="9FD5AB95FE674AE3" modified="2020-12-02" version="1">MASDWLVVNADNADCITSLNCSVCKTYADRLKGMKNFSTAWAFTGSENLQLSNVEDHACGEPHKKAMDLYLSEKGLSATDRAEFISTPGQQNIALSIANMQASDLAKTRTKFEIAYFIAKEELPLKKYPKLLKLEEKHGVEIGNSYRSDKSCNVFINHIGEDLGKNLQKKVTECKFFQCFDGWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JP24</accession>
    <name>A0A6S7JP24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018728</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017947">
        <property type="protein sequence ID" value="CAB4031864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JP24"/>
    <dbReference type="OrthoDB" id="10063284at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF33">
        <property type="entry name" value="ZINC FINGER MYM-TYPE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="13132" checksum="00414BE0EACD6AA3" modified="2020-12-02" version="1">MQAHYLPWQSRNEFIKLCVKKVKTEIPTEIEKSYYYGLIVDGTPDDSHTEQFTFVIRYSVLKNGIWEVMERFLKVQDCEKKKVLLAGETAGVSSNKQLVYRCMAYQTQGGVQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPE9</accession>
    <name>A0A6S7JPE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009914">
        <property type="protein sequence ID" value="CAB4018231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPE9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="56" mass="6092" checksum="4F3D2BD0ED0F2005" modified="2020-12-02" version="1">MGAICLQAAVLGLFLPETKGTPTLETMDDMKKNQRVALLDVNSNDKVEANNNDTEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRY1</accession>
    <name>A0A6S7JRY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033047</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021028">
        <property type="protein sequence ID" value="CAB4035405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRY1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11874" checksum="4B904EE2DB93E051" modified="2020-12-02" version="1" fragment="single">MQRQIYRPAADIFNARYLLCQYIWITDSNKKDLKEFFGKYLTFCEENSLDSEIVRWKRKFADVPLKQKPKTACDAAAKCDATFYPVIKWTGNTHDSSRQPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K3Q9</accession>
    <name>A0A6S7K3Q9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057907</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024899">
        <property type="protein sequence ID" value="CAB4039057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K3Q9"/>
    <dbReference type="OrthoDB" id="5952622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="165"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="32413" checksum="6276ACE8307C4754" modified="2020-12-02" version="1" fragment="single">MNAITVNKQGIGFLEPTDILYLYCVDFQFLLDFTITSLPFMELELVGGHVSFPDKLHERRIVLFPNGDIIRNLSQQISPCAIEIVTCCHITVGSRQAVLVWDFIVKDDLQPVSTVKAVLPVEDDDSYPTLPWLDITQTNCNCNKYPTRGLIVQNSSNESQYLCDDGGHSDDGGHSDNGGHSDDGGHSDDGGHSDDSEIIEHAVNDHNDSAVTDDGQVNMEHLDHVAEHEEQQYTEKFKLKGTSFHNHFQSALRHFKFCQLSELEPPALSLHFEPVNKRDENAIVVIAEID</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEE6</accession>
    <name>A0A6S7KEE6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046284</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031773">
        <property type="protein sequence ID" value="CAB4043207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEE6"/>
    <dbReference type="OrthoDB" id="10414757at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="91"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="25405" checksum="EE48101308345F49" modified="2020-12-02" version="1">MDSFLADRPEAEGLEESIDTSGVVIASVSESEDDLMQKYGEGKIVERQCPECDETFELRTAGTHVGSNNSIAVFCDDDPMVCPYCNYTEEVEQDDENKRSPNAPTTLASTNDEDDKIPTISKNKSTRKGKPSKMQNAFTNAMKEHNTYMHESDKKMLAEMKEQAEKDRELRKEELGAFKDSMALLAGVLAGRAKPITQPAPANQPPYYPIPLQHDITIDNQQTYFKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGE8</accession>
    <name>A0A6S7KGE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016310</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027867">
        <property type="protein sequence ID" value="CAB4041160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGE8"/>
    <dbReference type="OrthoDB" id="6819250at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="9766" checksum="17FA25F0DA91BDAD" modified="2020-12-02" version="1">MTLKSSDNDNTIAVDDPNSIADLFNTFFASVLHQDQTHPANETTITDENCLTDIELTVDDILPLLHSLNEHKATGLDGISNKILKETAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KI10</accession>
    <name>A0A6S7KI10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035551">
        <property type="protein sequence ID" value="CAB4044607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KI10"/>
    <dbReference type="OrthoDB" id="2117703at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038752">
        <property type="entry name" value="IQCH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14465">
        <property type="entry name" value="IQ DOMAIN-CONTAINING PROTEIN H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14465:SF0">
        <property type="entry name" value="IQ DOMAIN-CONTAINING PROTEIN H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14897" checksum="10165F61782E68C6" modified="2020-12-02" version="1" fragment="single">MRNYSVPLAIIDGDRLADLALVFELEERPQLEHFLTCVLNSEDVEKTIRTPGRRYLGPDGEIMAAIKIQSTWRRFCDRAAYLIHRQRQWAAGVIAISWIMNCKLSMVRKQLKHLRQTQAEKFKLRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJP3</accession>
    <name>A0A6S7KJP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051729</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020045830">
        <property type="protein sequence ID" value="CAB4046106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJP3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="12733" checksum="3CDA6CF0041F0D36" modified="2020-12-02" version="1" fragment="single">ELPPHAIAVSSAAWKGCRLRIPGNDGEFVKELPPHAIPVSAAVWKSCCCRLGIPGNDGEFIKELPPRVVAVSAAAAAYGFRATMANSSRTSFHASSPSLPPFGKAATAAACSWAPHQLFIGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KK19</accession>
    <name>A0A6S7KK19_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015586">
        <property type="protein sequence ID" value="CAB4028593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KK19"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19330" checksum="45D4063DD9E29523" modified="2020-12-02" version="1">MKTIGKAIRAVTVKWRNWKQAMYTFLRQYRATQHTTISVSPSEALNNRKLKTHLLDSPSTPSNSKKDEKIRSRDEKNKSTMKSYRDKRNRAKSNSITLGDTVLLRQPQLSKLSTPFDPEPFRVVAVKNSMITARNKLRTITRNSSFFKKNTPSPCSSRNLRRPRHPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMZ5</accession>
    <name>A0A6S7KMZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">THAP domain-containing 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A066548</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034602">
        <property type="protein sequence ID" value="CAB4044334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMZ5"/>
    <dbReference type="OrthoDB" id="7312725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.210.20">
        <property type="entry name" value="THAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026516">
        <property type="entry name" value="THAP1/10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038441">
        <property type="entry name" value="THAP_Znf_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600">
        <property type="entry name" value="THAP DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600:SF11">
        <property type="entry name" value="THAP DOMAIN-CONTAINING PROTEIN 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4044334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16085" checksum="AEACD9B2A932B5DB" modified="2020-12-02" version="1" fragment="single">MAAIDKREGACGTKSKKQLGKYCVAGRPGNISCKNNSTVQGISMHGFPKTEGTLRNLWIKFVQRHRPNWQPSPYSALCSAHFEVHFYLQRPDVTVNQLDTDNSFQTKKMLDRKIAYPTIDTVQPEREVHNISDREHRNTVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQD0</accession>
    <name>A0A6S7KQD0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020050370">
        <property type="protein sequence ID" value="CAB4046338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQD0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="66" mass="7524" checksum="E182AAE8EEDD4071" modified="2020-12-02" version="1">MEELVAAPNGGQQRGKLDEIERLVPKQRSNDNSSKEEFSFHTFPAPTSRLGYRSNASWSRDRSRNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KVF5</accession>
    <name>A0A6S7KVF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016172</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017944">
        <property type="protein sequence ID" value="CAB4031853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KVF5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13443" checksum="9E30EA4568068CCF" modified="2020-12-02" version="1" fragment="single">MFKAGTLPLDMYRSSDHPKDKVSFDTDAVEKKPVMFVKSASTITSHEKDDEVEVRVEEDEEVGEDYDADDSDSDHATVDSGESNSLGSLTFLRVVTTIHVVDERYEFVYRMTKVTNVDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KZR0</accession>
    <name>A0A6S7KZR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013746">
        <property type="protein sequence ID" value="CAB4025669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KZR0"/>
    <dbReference type="OrthoDB" id="10065023at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="28941" checksum="5F90335175C6F489" modified="2020-12-02" version="1">MDESSGKVVDFSLVQVTEVSSSNAMEYEGCKRSLKKLIKHKIPVRCLTTDRHVTITARMKSDFPKIKHQYDVWHLSKSVTKKLTKNKAKKKCNEDLLPWIQSVSNHLWWSVSTCDEDVSVVKEKWLSIIHHVSNKHSWRGCKHFKKCVHHRLSRREKKQVPWLKAGSPELVALEEVVNNKRLLKDMEKLTEFRHTGELEVFHSLMLKYLPKRKHFSYRCMVARTQLAALDHNHNCNRVQAVVNVAIQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KZS1</accession>
    <name>A0A6S7KZS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052898</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020046465">
        <property type="protein sequence ID" value="CAB4046151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KZS1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12914" checksum="1AA7171AD5C218F5" modified="2020-12-02" version="1" fragment="single">VMKSLEEIGHQGLSSFIYDGKKLKWRKNFDQLKKFIQDLLGIEGTWSSPGGHAKRFKSQNGELILNYYTKKQNILFQGTYGNDLKNKVIDQLNKVNQTFDEDEVESNAIKSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L312</accession>
    <name>A0A6S7L312_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028627</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019722">
        <property type="protein sequence ID" value="CAB4033993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L312"/>
    <dbReference type="OrthoDB" id="5952813at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15154" checksum="499C34CB6DC7B549" modified="2020-12-02" version="1">MENQLLNRYDPVSQFCVSFIVINTVQIGIQRVIEAWNAHPIEGRNYKIPNVVAERTSRVRSVDVTLIPNVDEAVQMYTDAGGTITQECSFGIDPLAAHQNLKNRREAHFSQMIGSFTGVYNNVISGDGSLLQIAIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTK3</accession>
    <name>A0A6S7LTK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005197</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032509">
        <property type="protein sequence ID" value="CAB4043493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTK3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11165" checksum="4530DFC473833967" modified="2020-12-02" version="1" fragment="single">MKKRTGSSGTVNCTGIPATECSGFSGIINNAIKNIKSNNSNTEYFSGIREPTTTTVPKNPAKYTGGANNYGEYKNFASRNPGNPRSGTQNISSYESNIEYILLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D809</accession>
    <name>A0A7D9D809_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082703</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000126">
        <property type="protein sequence ID" value="CAB3978576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D809"/>
    <dbReference type="OrthoDB" id="1888931at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008670">
        <property type="term" value="F:2,4-dienoyl-CoA reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05369">
        <property type="entry name" value="TER_DECR_SDR_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000084">
        <property type="entry name" value="Short-chain dehydrogenase reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43658:SF8">
        <property type="entry name" value="17-BETA-HYDROXYSTEROID DEHYDROGENASE 14-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43658">
        <property type="entry name" value="SHORT-CHAIN DEHYDROGENASE/REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13561">
        <property type="entry name" value="adh_short_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="328" mass="35383" checksum="24CFDE564C44EF28" modified="2020-12-02" version="1">MASSRVVQRKIFNFARNPSQIKAVSRAMSGSKFPARTEPMLPKDCFANKTAFITGGGTGLGRGMAEMLSRLGATVIIASRKLDVLQKTAEELSQDTKNEVFPIQMDVRDPEAIKNAVDACVEKFGLPDIVINNAAGNFISPSERLSPNAWRTIIDIVLNGTAYVTLDIGKRLIKAGKGCNFLSISTVYAQTGSGFVVPSAAAKSGVETMTKSLAAEWGRYGMRFNAIAPGPIETEGAFSRLDPTGEFKEEAINKLPTSRLGEINELANLAAYLVSDYSNWLTGEVIILDGGETAGMGEFNGLLKVTNEQWDMLEAMVRKSSKSPKSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D875</accession>
    <name>A0A7D9D875_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000113">
        <property type="protein sequence ID" value="CAB3978439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D875"/>
    <dbReference type="OrthoDB" id="6262682at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="39643" checksum="6EE24D65BEAE620D" modified="2020-12-02" version="1">MELTTLLERRMRGDLIEAYKIINGHVNYGHQMFNHNLHYNTRNLCNVSSCRTRFALDCFSVRVIKYWNNLPNSVKYAPSVNAFKAGLDDLKSYNPDSRHGYWYLSQEIFNRIPDKNDHVTYLKLHPEILIMNKKLTNTLLVTILLSFTLIPHGHSLQADVQRDTMTSKPSVESPRGRWVARLIYEWKSNMNDRRAKRRCGPRMTGSCSQHFCSSYKRPKVCLLRSHPWDNIWKKPQNIDQHFQSIFSLKQTQMAGYRVILFALLAITVLSISEIQARPRLTRDVLAEFENSYDAMNKNEELSNFPNDYEDEANDYEDEANDYENIPKAAGCNTPMGGWFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAW7</accession>
    <name>A0A7D9DAW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050495</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000379">
        <property type="protein sequence ID" value="CAB3981353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAW7"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="51" mass="5683" checksum="D67C8301A057A735" modified="2020-12-02" version="1" fragment="single">ENLLSTSQHGFRPGHSTVTALLEITDRLYHNIDIGELNGVVFLDLKKAFDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBP7</accession>
    <name>A0A7D9DBP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030198</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000383">
        <property type="protein sequence ID" value="CAB3981377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBP7"/>
    <dbReference type="OrthoDB" id="6155824at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18816" checksum="FFAD26E3437693B6" modified="2020-12-02" version="1">MESLCDMFAAMNISQEVPNDLVVDEVSYEVKNVCDLMNAVFFEAVVCEIRRLLKEKCPGCEVDHPSQRRHECIMLSGEEGWLLHGLEAVERVIERGIVKKQFLEAIRVMKLEYYERAKEHYANLIKDREVTLDFLGDLRGSFSDYEPILNYLMYWSEEHCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFQ8</accession>
    <name>A0A7D9DFQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ankyrin repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060387</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000613">
        <property type="protein sequence ID" value="CAB3983441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFQ8"/>
    <dbReference type="OrthoDB" id="5949075at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039323">
        <property type="entry name" value="ANKRD_45/46/60"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22677">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22677:SF4">
        <property type="entry name" value="USHER SYNDROME TYPE-1G PROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13637">
        <property type="entry name" value="Ank_4"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="22"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="20"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="20"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="785" mass="86577" checksum="124304DE58D4DAA2" modified="2020-12-02" version="1">MRNVNKTNGDGNTALHKAAGSDSLEILKYLVEHGANVNQKNGNGRTVLYNAVYSDSLQIVKYLVEQGANVNEENDNGSTALHNAARRGSLEIVKYLVEQGANVNEKDGDGETVLYNAVYSDSLEIVKYLVEQGANVNEENDNGSTALHLAASDGSLEIFKYFVEQGTNVNEEDDNGRTVLHNAARRGLLEIVKYLVEQGANVNEKDGDGETVLYNAVYSDSLEIVKYLVEQGANVNEENDNGSTALHLAASDGSLEIVKYFVEQGTNVNEEDDNGHTVLHNAARRGSLEIVKYLVEQGANVNEKDGDGETVLYNAVYSDSLEIVKYFVEQGANVNEEDDNGSTALHNAARRGSLEIVKYLVEQGANVNEKDGDGETVLYNAVYSDSLKIVKYLVEQGANVNEKNDNGSTALHNAARRGSLEIVKYFVQQGINVNEENDNGSTALHNAAKRGSLEIVKYFVEQGANINEKNGDGETALHLAASDGSLEIVKYFVEQGTNVNEEDDNGSTALHNAAIRGSLEIVKYLVEQGANVNEKDDNGHTVLYNAVYSDSLEIVKYLVEQGANVNEKNGDGVTALHSAARCGSLKIVKYLVEEGTNVNEKNGDGVTALHSAAKWGSLEIVKYLVEHHADINCKSMKDKTALHYAVEFGSLEMVEYFVENGANVTREELHDEKTVLYLAFATNNEFIFYYLLQHGAIKDMHVYDYSSRSFLNIACYEGRTALVEILLKFNVNMRQELELICGNDEIINMLNLELKKSIKHRDSIKKLKALDKQMLTKVMYFEVFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DQ16</accession>
    <name>A0A7D9DQ16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Small glutamine-rich tetratricopeptide repeat-containing beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A011705</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SGT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001756">
        <property type="protein sequence ID" value="CAB3990928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DQ16"/>
    <dbReference type="OrthoDB" id="2335338at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072380">
        <property type="term" value="C:TRC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060090">
        <property type="term" value="F:molecular adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006620">
        <property type="term" value="P:post-translational protein targeting to endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.420">
        <property type="entry name" value="Immunoglobulin FC, subunit C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047150">
        <property type="entry name" value="SGT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032374">
        <property type="entry name" value="SGTA_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45831">
        <property type="entry name" value="LD24721P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45831:SF2">
        <property type="entry name" value="LD24721P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16546">
        <property type="entry name" value="SGTA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0802">TPR repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="200"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="250"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="262"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="317"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="338"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3990928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="365" mass="39765" checksum="930F1DF319A11E5E" modified="2020-12-02" version="1">MSSNQRLVFSILEFLNSECESRMEDERESLEVVIECLERVYNVSLSNSSDVSKFHVDNPLTEIFESATKMTTRPFPTDEDKDRAEELKTQGNNLMKEGKYGDAIGCYDQAVKLDWTNAVYLCNRAAACSKLGKNEEAVKNCKEALELDPKYGKAYGRMGTAYMALEKYQEARDSYVKAKELDPGNDLYMTNLKTVEDKLREAQERSSSASQGTGGGPANMMSSLFSNPGIMNMASQFMANPQMQQMMTNMMSGFGGITGDDQSAGQQPPSQPAEGQPDSEATTTPESNTGTTGTNPEAGSGTNPEAGSGAGGYSNIFQFASQMAQQLQQSNPELINDLRQSMQNVAGGNTEPNQNTDDPSKNGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DVL6</accession>
    <name>A0A7D9DVL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A066418</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell envelope</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002472">
        <property type="protein sequence ID" value="CAB3994476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DVL6"/>
    <dbReference type="OrthoDB" id="5989148at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003368">
        <property type="entry name" value="POMP_repeat"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01376">
        <property type="entry name" value="POMP_repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32158:SF21">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32158">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0964">Secreted</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3994476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1074" mass="120266" checksum="26F17ED00640440F" modified="2020-12-02" version="1">MKNIILSSCGAIQNSTSIIPEHSTKHRIFLTGLFLVNCINLSMDMVWISEAPGIGMQLYDVAGNVSISNSRFTKNGKNKQDSLFPGGGFYFEFTYMGGLYPFKAPPEHIYQENGTFYFINVTFERNHAPKVAASTFDAGDYNHDAFGRGGGVSFFIKGSAQNNKFVFENCHFDGNSAKWGAGLFVEFQDNTKSNSLIFQSCHFNHNDASVGGGAVRIGLIAKHQRPQSSCVPNWVRFASCHFKYNKAIVGGGISLYGTTKQSGFHDQSFISLTHCVIEENWATIGSAFCSVLNTNQYGMGSSGSSLKISIANSHFGSNKIIYPREEKVSGTGAIYAKGTPIILCNTTFIYNTETALVLDSAYVEVFGNVSFINNTGQRGGAMSLYGTSKVIVSDQANLTFIENKCTVQGGAIYVRTPGPQLRAFNSTELMLHDCFFHFENDDDCSVSFYGNRGSTNTSGHSVYATTLQFCRRVNEGRVDNSALQTKSFCYYYANGTYKSDMVYEIVTDAVNIEVNGSDWNTTVDKSFSPVVKLTDEKSNSVVGVINIQIISAENTVKLDPSSAYFLAKDNIKSLQINGQPKTRYGVNLVTVDSQLVFDNIFNAEIKGCEPGFHWKESKCQCDDTQNGVSRCDYEKQTLFLLKGYWGGYVQSGGTFVIVSCPENYCYCHKNFTSSGECLFERDKQCRGNREKQVCGRCKKGFFLKIGEDDCTRECNSDSLKWIGYLVAILLSLTLLVLFIMLINFDPFSAYLNAWLYSYQVLLSLTPGDMSFDPFLTFIINLAHIQILGFGSVCMWSNMDDLQKLAFNYILPVYVFICLFVLGKIVVQWPNNFFTRRLTQTSLARAFCTLFVLSYSTVINISLKILRPVKVGNEYFMYYQGDVGYFSFYHVIFAVFALLLVIFVGIFFPLLLIRRQWFRSFDKGLKKLLLDNFQRCFRDGYQWCAGYYFVCRFILLVVRLAVPQSALQVSLLNSVCCIILAIFVLCQPYADNTNGGTVVPYRILNISDAVLLCNLCLISSFGGTASGIYGHSYYKNFQTVISILSYIPLVFSFGLLAYVLRHKYMTRNRLLEDVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E019</accession>
    <name>A0A7D9E019_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Contactin-3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A041260</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002681">
        <property type="protein sequence ID" value="CAB3995530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E019"/>
    <dbReference type="OrthoDB" id="5967626at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043025">
        <property type="term" value="C:neuronal cell body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008046">
        <property type="term" value="F:axon guidance receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050808">
        <property type="term" value="P:synapse organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01450">
        <property type="entry name" value="vWFA_subfamily_ECM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.10:FF:000273">
        <property type="entry name" value="contactin-3 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050958">
        <property type="entry name" value="Cell_Adh-Cytoskel_Orgn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080">
        <property type="entry name" value="CONTACTIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080:SF8">
        <property type="entry name" value="IG-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3995530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="445" mass="50103" checksum="2F6C78316899B0B3" modified="2020-12-02" version="1">MKIRRFFDEEARDEPIADAEKKFRVEVFFKFIDKVRGRGTGDAKGVQRSDLCCQDIQFFEKNENPFGPTIKTKLEDREVVKGEEFVVLRCGAVGLPTPAYSWTFKGLNGVETPITSGENGYELQDYNHLLMITTVEPKHDGWYKCRVSSNYSGQAHVDEKTARLFVKGKPKWAYGGQLSDATAQEGVRFLWLCHAYGNPDPTYTWIKNGEKLPKSDKYEINGGVITFKSVSMDDEGLYQCVAENEFGGISSPAVLTVVTAPTTPPPDPCMVAKRNIMFLVDGSGSVPVATFGEFKKFMSLLVEKFDIGQNTTHVGVLQYSTKPRTGLEFYFTEHQTLAAVQNAISKVRYHYGAYTFGGYAMNLAQQIMNHYDRSDAKNVWVLLMDNGLWDKTMARKISRAIRQAGTKVIVLDTENIMHDIADKGLDFSSENLEENVEVVRKEICK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E1R4</accession>
    <name>A0A7D9E1R4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="6">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">DNA 3'-5' helicase BLM</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A060831</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020003613">
        <property type="protein sequence ID" value="CAB3999546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E1R4"/>
    <dbReference type="OrthoDB" id="10261556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032284">
        <property type="entry name" value="RecQ_Zn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16124">
        <property type="entry name" value="RecQ_Zn_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-0347">Helicase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="45"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00044542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3999546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="29057" checksum="7FF4FC055E9BBD9D" modified="2020-12-02" version="1">MPSTPIANIVSLSDVMTTENNIPQPSGDVHLDILRNIFQHENFRGIQRRVIDVVTTNKDALAVIPTGGAPKILLSWPTYLNPKVFMCIYYHGQLDYFERTDNARAWLSGKAQVICATSAFGMGIDKPDVRFVIHLSLPRSLEEYYQEAGRAGRDGNTSHCILMFRFEDRNKLIQLIYKSTSEDHMEFQTHSLNRVVSYCMSSICRRKLILEYFDDGFDVNCNGSCDNCLTTPPLPKDYTMETINTCLCLEEMDFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EE98</accession>
    <name>A0A7D9EE98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019846</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005702">
        <property type="protein sequence ID" value="CAB4007114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EE98"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="556" mass="64120" checksum="5EE4E6019C932C46" modified="2020-12-02" version="1">MSINNKVTCCIEESDDDENTDSDTTKGRRNQAHAVINKIIKFSKKSTSENVLESLQTCHWQDNLQVLQEKMILLNNPRRKEIIRGLQAVLQEMLIEEPFDGPNPRIVGFIPFDEGFEMYMGFQSVQNLSEQARYDFQCAVLHPKTGLCANIVKFPSSGKKVIVLRSDKSLDFSRFFDFLALNMTTSSKEEFSKAEVDLIQESMSTEWDRNMIKYILSRTRTGSAMESLGVRRESTQKLKTHVPMVLDAIEKNEELIRKRCETWSKVRLDELQDKIEADQDRLTELENIQTGSSKTHKQRLQQMSKRQARQLLAVNRVGKRKLGDQGRKSLIDSDTEEKIAKAIEDKATYHGRRHNTTMYTNRRVKVADLPGIANHFLALAGKPLITSKTTVWNRSEPRRKNSIQAKLHLGKGLFCTKKPPKTEHCENESTHHQRAHVNNVKMLFFSRRNESNRKYCFCRSVDDKAYIRPGTGEGMNHARNQRILQPTAEERSRKLPIHDWPERKMYITPSAHRIFSKIGETIDGTEKLITDDDYHFVFVRPKFFIGSSAPCGQVKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EFJ9</accession>
    <name>A0A7D9EFJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022232</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006243">
        <property type="protein sequence ID" value="CAB4008833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EFJ9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="95" mass="10574" checksum="74AC1C8CBAF1271B" modified="2020-12-02" version="1">MDIVKDVEGNGNEIDPVDAGIDIIKSTESSIKESIAESDEFSSEEDIETGDRTRNRFPEEPTDMQVTNDMINTDANTIMSDESMTEECQSTSMPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EFS6</accession>
    <name>A0A7D9EFS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006293">
        <property type="protein sequence ID" value="CAB4008992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EFS6"/>
    <dbReference type="OrthoDB" id="6619746at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="325"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="429"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="434"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="449" mass="52496" checksum="9E4C1572CE6DD173" modified="2020-12-02" version="1">MSALIRSQITKNTRAKYFCDKCLDGFGRKDLLKEHLEMCLKENEKGVGKFPDKGSVCEFEGVRKMQIHPYVINADTESFLKKKEKVGRINRKKLKGSGRKHLHDHVMNSYCFHTVSTNEDRMKSETVQKTSVHELQCISDRFVDDLVAKVREFFRNTNDPLPMEEMTEDLKKSHLSETRCYKGVYPYEYMDDHEKFDMSRLPPKRFFYNGLKMEDVTDEEYERAKKFIENGIRGGISTSIMRYGTADNKYVDISEIPEGIINLMRDLNLKIRKDPTDIREKVLEFENDVCKFLWDYSQEDDDKIMRYIEKNLTRWVACLSDHGKEDDSQMTEVNPESVPVTEPEKVKDPRRVKAGKKLGAMSQEYKKAKKERLEKNLGAEVRGECMTEGRWISIERLCMIFGLGIGLGSLYLTWKSHDDKKPAKQEIIYENNNDVEKDPPKEPFDDLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZF7</accession>
    <name>A0A7D9EZF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010876">
        <property type="protein sequence ID" value="CAB4020279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZF7"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19418" checksum="C2F2D48B5C28DB2D" modified="2020-12-02" version="1">MDNGKLTGLISVDIRKAFDSIDHKILIRKMQEKFGVHSLELQWFQSYLSKRSQVCAVDGHTSLAREIVCGVPQGSILGPLLFLSYINDLPECLQNTTPGMYADDTQIYASSASFTELVTKLNEDLENRVKWLSQNKLQLHNKKTKVMFIGSPYNLKNKVGNDQVMINNKPVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H729</accession>
    <name>A0A7D9H729_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038484</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000028">
        <property type="protein sequence ID" value="CAB3977081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H729"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="25354" checksum="87B9DB69C976CF14" modified="2020-12-02" version="1">MKDAVSNILEQFNNRFGKYPKFAQFDQGTEFYNKDVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDLTDNYNSSVNRSIKTTPDSVNESNWTEVWKTLFSHNLGKLSEPKFAVGESVRISKYKSVFTKGYEANFTEELFTVTEVYHGHPNTYAIKDSADEPIIGRFYEQELYSAEGREPDFRIEKVLRRRTLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8X6</accession>
    <name>A0A7D9H8X6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">G- coupled receptor Mth2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A077970</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000058">
        <property type="protein sequence ID" value="CAB3977615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8X6"/>
    <dbReference type="OrthoDB" id="5988151at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15039">
        <property type="entry name" value="7tmB3_Methuselah-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022343">
        <property type="entry name" value="GCR1-cAMP_receptor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02001">
        <property type="entry name" value="GCR1CAMPR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3977615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="452" mass="51313" checksum="2E50925CE6B79890" modified="2020-12-02" version="1">MKDISYLGWNLSVINSLVKQLACVGQKTFSINEYNIDEKNGKVIENKTGKTFLLKDVIEKTDENITLCPQTFFSDCEAWLNVSRHEYVILTNLTLYHNATNRMYPFGKYYIKRNNDTAGDVNVDDANISSLIDEFSKSLRNATVFICLPNIPISIIRSANYHDNHKQPLEILTMVGFIISILSVLLVLITYTLFSELRTLPGKNLMNLCLSLLIYQSVWLVRSYVQENATSCTAIGILEHYFILVSFVAMSVISHHSCVVFSKSLISARRSEGENCDTFIKYTAVVWTLPAAFVAVCIALDKTEVFPINYATLCFLTTEHSKIYLFILPIGLSLLFNLSIYIRTAIFLVKQQESTGELHQNRKQNLKICIKLSTLTGFPWIFGFLHAGLGNIVAFEYLFVIFVCLQGLYIAVAFLWNTRVHKLYKNRFNNGDQNDNNVPPVQAQVNTATTLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCH9</accession>
    <name>A0A7D9HCH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fibroblast growth factor 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heparin-binding growth factors family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000122">
        <property type="protein sequence ID" value="CAB3978532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCH9"/>
    <dbReference type="OrthoDB" id="5966406at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008083">
        <property type="term" value="F:growth factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd23307">
        <property type="entry name" value="beta-trefoil_FGF8-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002209">
        <property type="entry name" value="Fibroblast_GF_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008996">
        <property type="entry name" value="IL1/FGF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11486">
        <property type="entry name" value="FIBROBLAST GROWTH FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00167">
        <property type="entry name" value="FGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00442">
        <property type="entry name" value="FGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50353">
        <property type="entry name" value="Cytokine"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="30999" checksum="8738BDC2931A4ABF" modified="2020-12-02" version="1">MRVYGYGTASFYTYLILMLAYTETSQDILGKHYDDQRQKTDKTTPSYASTVRLYSKSSGKFVQVIRRAVNASATEGSDAALLITETDTFGKIRIKHYKSNYYICMNVKGEIIGLNEKKGRHMKRCLFRIVRTQDGYVQFISDKYGKKKKVSRYLAFRHTGEPKLFTKVLVANQRATKFLKVEVKIKKKRHAKRNIRRRRISHEFLSQEKRKHRKRQGSKICLRYLRCMHKKWKSKNRGQRITVRCSRIRRRRFCKCRCAKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HE83</accession>
    <name>A0A7D9HE83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061554</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000495">
        <property type="protein sequence ID" value="CAB3982401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HE83"/>
    <dbReference type="OrthoDB" id="10221010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15206" checksum="AD45B582A1E7546D" modified="2020-12-02" version="1">MAGAVAGGLFNAFAFAGAGYLFKMFDNNGYAEEAKRHNLAMENLTAEREKYLEEVTDRRNRIAQLKSELAEANKDINSTNQSLELVRRIDELTHKPMPRKPQLSNHYKPSSEMEEYMTIFGLITGGVVGGAAYLML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HEC7</accession>
    <name>A0A7D9HEC7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DDE Tnp4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A037044</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000411">
        <property type="protein sequence ID" value="CAB3981618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HEC7"/>
    <dbReference type="OrthoDB" id="5979355at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE Tnp4" evidence="3">
        <location>
            <begin position="110"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3981618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29586" checksum="467D7CF5E7B2FD5C" modified="2020-12-02" version="1">MAEQLLVLLEENISQNPDFDYLQYERFDLATIPEPECRSNFRFDKDDIPLLAGALGLPDRFQCYQRTTARKLEGLCILLRRLAFPCRYADMIAMFGRPVAELSMITNESVTLPNGIIANMFGPIEGKGHDAGMLADSNLLNYLEQHAYSPDGEQMCIYGDPAYPLRVHLQAPFRDVLMTPAMQEFNRSMSTVRVTVEWAFGEVTRSFRCLDFKSNLKLGLSCVGKMYLVCAVIQNALSCFYGNQTSKFFDLDTPSIVEYFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNT1</accession>
    <name>A0A7D9HNT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A015721</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000829">
        <property type="protein sequence ID" value="CAB3985104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNT1"/>
    <dbReference type="OrthoDB" id="5978836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="513"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="554"/>
            <end position="569"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3985104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="569" mass="64467" checksum="85F7621540517CA4" modified="2020-12-02" version="1">MILTFPYNWLVMLHLHGTEHPIVFASRSLSKAGRNYAQIDKEALATVWGVKKFHNYLFGRNFTLLTDHEPLTSIFHPSKSLPVVTAARLQRYALFLAGFDYTIRYKNTKLHGNADGLSRLPLHSETTEEEPDPVGLFYATQFEPLPVTAEQVKRETQRDPLLVKVHGLVMKGWSTPQDEAIKPFYQRKDELTVHCAVLMLGHRAVIPAKLRNQVLTELHEGHLGIVKMKSLARSYIWWPKIDKDIEHLAKSCPGCQLQQNEAGKVPLHPWEWPTTPWQRIHLDFAGPFLGRMFLIIVDAHSKWPEVEIMPSTTSTQTTDRLRTIFAQYGVPAQVVTDNRPQFTSAEFQLFLKTNGIKHITTAPFHPATNGQAERFVQSFKHAMKCEKQSASQLKTNMAKFLLAYRNTPHSTTGESPSMLFLGRPLRTRLDLVKPDLQRKVMNRQIDQAGRKRHSPTRQLSIGQTVMARNYSGKDKWLPGIVRAQTGPLSYQIKVGPNRIWRRHIDLLRASSVKVNDQSDDTAEPHPELGETGQNIAPAEEIVAEPDIELATNPPVVQQQEAGRATTGSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HP07</accession>
    <name>A0A7D9HP07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006968</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001540">
        <property type="protein sequence ID" value="CAB3989719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HP07"/>
    <dbReference type="OrthoDB" id="5983996at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="225"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="154"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="238"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="248"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="33456" checksum="3208EED785404092" modified="2020-12-02" version="1">MVVIDEYSRFPEVEILTSTSARAVIPKLDAIFSRQGIPDVLKSDNGPPFTSLEFKKFAEHLGFQHRRITPCWPKANGEAERFMRTLGKSIRTATVEARNWKQDLYKFLRQYRATPHSTTNISPCEALNQRKLKTTLPEPDLPRVIYDDIQRKMERRDAEQKSKQKLYADNKSRARESSLSPGMVVLVKQPKQNKLSTPFDPNPFVVKEKKGTMVTASNDLKTVTRNSSQFKVIPPELNPERNQEKQGNEAQTENPPSVANPNQDEITESLRRSNRQRRQPARFTDYVTTIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQ39</accession>
    <name>A0A7D9HQ39_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">receptor protein-tyrosine kinase</fullName>
            <ecNumber evidence="2">2.7.10.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="25" type="ORF">PACLA_8A023115</name>
    </gene>
    <organism evidence="25 26">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="25" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="25">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10596"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:20101"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:61978"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.10.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="25">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.10.1" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020001667">
        <property type="protein sequence ID" value="CAB3990479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQ39"/>
    <dbReference type="OrthoDB" id="6021492at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
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    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
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    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
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        <property type="project" value="UniProtKB-KW"/>
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    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
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        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
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        <property type="project" value="UniProtKB-EC"/>
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    <dbReference type="GO" id="GO:0007169">
        <property type="term" value="P:cell surface receptor protein tyrosine kinase signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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    <dbReference type="CDD" id="cd12087">
        <property type="entry name" value="TM_EGFR-like"/>
        <property type="match status" value="1"/>
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    <dbReference type="FunFam" id="3.30.200.20:FF:000619">
        <property type="entry name" value="macrophage colony-stimulating factor 1 receptor isoform X2"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="Receptor tyrosine kinase"/>
        <property type="match status" value="1"/>
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    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
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        <property type="entry name" value="Ig-like_dom"/>
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        <property type="entry name" value="Ig-like_dom_sf"/>
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        <property type="entry name" value="Ig-like_fold"/>
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        <property type="entry name" value="Ig_I-set"/>
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        <property type="entry name" value="Ig_sub"/>
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        <property type="entry name" value="Ig_sub2"/>
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    <dbReference type="InterPro" id="IPR013151">
        <property type="entry name" value="Immunoglobulin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050122">
        <property type="entry name" value="RTK"/>
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    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
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        <property type="entry name" value="Tyr_kinase_AS"/>
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    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
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        <property type="entry name" value="Tyr_kinase_rcpt_3_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416:SF600">
        <property type="entry name" value="PDGF- AND VEGF-RECEPTOR RELATED, ISOFORM J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="ig"/>
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        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="TyrPK_CSF1-R"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="TYRKINASE"/>
    </dbReference>
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        <property type="entry name" value="IG"/>
        <property type="match status" value="5"/>
    </dbReference>
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        <property type="entry name" value="IGc2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00240">
        <property type="entry name" value="RECEPTOR_TYR_KIN_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 20" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="14" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="16" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="17" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="21" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12 24" id="KW-0472">Membrane</keyword>
    <keyword evidence="21" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 20" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="15 25" id="KW-0675">Receptor</keyword>
    <keyword evidence="26" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 24" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 24" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="13" id="KW-0829">Tyrosine-protein kinase</keyword>
    <feature type="transmembrane region" description="Helical" evidence="24">
        <location>
            <begin position="653"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="260"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="1106"/>
            <end position="1170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="23">
        <location>
            <begin position="260"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="23">
        <location>
            <begin position="1125"/>
            <end position="1137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="23">
        <location>
            <begin position="1148"/>
            <end position="1157"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="19">
        <location>
            <position position="901"/>
        </location>
    </feature>
    <feature type="binding site" evidence="21">
        <location>
            <position position="696"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="20">
        <location>
            <begin position="731"/>
            <end position="738"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="20">
        <location>
            <position position="792"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="20">
        <location>
            <position position="905"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="21">
        <location>
            <position position="906"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="21">
        <location>
            <position position="919"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for interaction with phosphotyrosine-binding proteins" evidence="22">
        <location>
            <position position="1046"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023137"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00051243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PIRSR" id="PIRSR000615-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="PIRSR" id="PIRSR000615-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="PIRSR" id="PIRSR000615-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="PIRSR" id="PIRSR000615-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="25">
        <source>
            <dbReference type="EMBL" id="CAB3990479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="26">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1170" mass="132735" checksum="0A081A4012F495C9" modified="2020-12-02" version="1">MFLFLAVTKYSFEIEPAVQSSVVDEGTSFEFRCEYGKGSTQMKWLRLRKINGTRNEDYIPRNLITVRTDSSKSVEVYSIKKVTPEDSGTYRCEITEKSGKRATRARVLQVKREKPPVFGDMKAIFVVNKGDDVQIVLHVTGSPSPNISCYHKDRLIIFCSGKTIDSVDISQNITTACSKDNYDLTGYHELMIRFATFAGNDGMYRCEASNSVGNDTINFRVNVTVSPKISRENSKYFAQRKTLDQKIKCIINLSNPRPTVTWSQQDLPTSSPEADPDEDKWTVSKYESELVPTHRGGYDSILTIPWEQEKSSFYRCFAGNNYGNDSRVFKFIRYGQGKEPIVVTPKSAVKNEGKTFIANCRVIVVFGGNIVFYRDNRTVMTNDNRTNITMTQDKDFRNITMVIRNLTLNDSGTYRCSEKGVSTNDYSQFVTLTVKALRPPVILDLQNQTADQDKVEETVLFCNVTGNPYPKVIWLRNSKPVEAKEIKSLNCGDQKSGYYYKNKEHTELAICEPEISHSGFYTCVVENQIGSIRRNMYLNVVAEPMFTEPTSLENKVLGAGDSLNHHCVVKGNPTPWVQWIMRNENKTMTNKSKEESILKINKMDESYVGNYTCRAWNSIGSIESHFLELKLKPPPEKYSPPLPSGDSMGAGSIVGIVIGVTIFLVVVFIIIFLWYRRQQKKLLFYKHQYFLRTGEYSVDPSLTLNEQSMNLPYDSDWEFPFERLVLGERLGAGAFGEVYKAEAMGILGLNPRDKSSIANKRRSKIRRSLRASQRPKKKTIPCDLSNAVVAVKSVKGQATENEIRDLAAELKLMIHIGEHKNIVNLLGACTTGRKLYVILEFCPYGNLLMFLRSKRDMYNSTWVKEIYDPDKEFTLIDIVGAAFQIAKGMDFLASRKLIHRDLAARNILVADEYVMKISDFGLARDIYQNDVYVKTSSGMLPVKWMAVESLFDRVYTHQSDVWSFGVLLWEMMTLGGTPYPDLPAEQLLDFLNEGKRMTQPNKCPLEVYTIMRDCWQEEPEARPTFATLVEHLGRILERHMEKANPYLHVEASPEEIEAAKEKDELVKPKSDYYLQPLLMSTKLHGYDSNAPLPTPPTDSYTQAVAPIPEADTIPTMKGAGSYALLREENPDEPKVPLDDESGIGLEDTNNKNHKDTNNIHGKSKSMESVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXB8</accession>
    <name>A0A7D9HXB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">L-ascorbate oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A085976</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multicopper oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002091">
        <property type="protein sequence ID" value="CAB3992644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXB8"/>
    <dbReference type="OrthoDB" id="2121828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13858">
        <property type="entry name" value="CuRO_1_tcLCC2_insect_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd13884">
        <property type="entry name" value="CuRO_2_tcLCC_insect_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd13905">
        <property type="entry name" value="CuRO_3_tcLLC2_insect_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF394">
        <property type="entry name" value="FI03373P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0186">Copper</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="7">
        <location>
            <begin position="346"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="5">
        <location>
            <begin position="543"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="6">
        <location>
            <begin position="811"/>
            <end position="937"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="999"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3992644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="999" mass="112055" checksum="02A72DF3D2386398" modified="2020-12-02" version="1" fragment="single">EFGKKQVWDKTIVLNYYLVTFTPPCQIPLSRFVKLPITSSLTKVNERANLYDIRIYVSPYKSVELNECKRYTVHSMIPNKCRAMSCQFNDENGFSSVGLIPVICTISLCGPDTTVYCETTEKQFNKIIHKKMLMITYLPQAINLITIGLRIVLSSIVLANHQSVCTIHRTGEATHLRNHTVILDNIKDLYMITSSGTAGHQKCLAAPSKKSARPSTIGNHHDLRCYRSLQESPQAGTAGTEPRTVTVKAVFHSNRIEAYGQNETVYICGGVDDTDGRTVCECKTNVCYFKLNIEHYQTFTAYSKDAPIGTRGRVFFINDTGVLEPTMENRQTSPCNNVSTCTQANTVDGKSYRSFISVNKRIPGPTLIVPEGATVVVDVTNYMFTEETSVHWHGMHQRNTPWMDGVGYITQCPIEAGSSFRYIFEATPSGTFWYHSHSGPQRTDGLFGALIVKENARTASWIASRFAYWYLDGVMFEDLPEQHTLSLLDWQRESSLDLFVQIHSSLGYFEDTAVDEIPRRRLTRYASTCSLDGAEVGPIPYWSGVINGLGRHANVALKNSRLSAFYVRRNSTYRFRLIGAQANYAYKFYIGGHKLRVIATDGFFIKPISADFLIVNTGERYDFLLDTIDANQTSGTDFLIRAETLEVNCNSLKVDEKLERNDAIAALTYGNSVNMSVIEAAYRNNFSKPNCTSQNPCTVVNCPFENWAEPGYQCVNVDQFRLLIPTPEKDMPNFNSEWPAKDATFFFNFGFDSTEVTSTVNGRNFVVPSISLQTEQGDKDKLTVCSDVSVACMKEDCQCTQILDLGENFYKKPIRFVFSSLSTMNNSRFSHPIHLHGHSFHVVKVGYGQYDSQGVLVNASSDLECNTPCTRAPNWRANTPPAGIQAAGLTVRKDTVIVPSGGYVVVEFIADNPGHWFLHCHIESHQLEGMAVVINEVETRQNPPPNGMTSCKSFTWSVEEFNKKRNWVKAEPTLVKSSARRPVLENLFLLVGFLIAQMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3V9</accession>
    <name>A0A7D9I3V9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003657">
        <property type="protein sequence ID" value="CAB3999732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3V9"/>
    <dbReference type="OrthoDB" id="6010336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="38"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17887" checksum="011D52AF8EB44EE5" modified="2020-12-02" version="1">MSDLDSISNASDIENSDVSDDSENEYVFSGEYLPYQNEPLASESESSSQDDDELDEDGLSVEILRQRYEKEVPVDKWCTCGKCNHLHLVGAREYRCCREVIECVGKYTYIGQNVGCITDHEDFSSLTNRTVLLEVATLLRNKDGKRYRRQPGNTENQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4B8</accession>
    <name>A0A7D9I4B8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">acid phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A047177</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a phosphate monoester + H2O = an alcohol + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15017"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:67140"/>
            <dbReference type="EC" id="3.1.3.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histidine acid phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.2" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020003095">
        <property type="protein sequence ID" value="CAB3997430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4B8"/>
    <dbReference type="OrthoDB" id="6021113at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003993">
        <property type="term" value="F:acid phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd07061">
        <property type="entry name" value="HP_HAP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033379">
        <property type="entry name" value="Acid_Pase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000560">
        <property type="entry name" value="His_Pase_clade-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050645">
        <property type="entry name" value="Histidine_acid_phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11567">
        <property type="entry name" value="ACID PHOSPHATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11567:SF211">
        <property type="entry name" value="PROSTATIC ACID PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00328">
        <property type="entry name" value="His_Phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00616">
        <property type="entry name" value="HIS_ACID_PHOSPHAT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00778">
        <property type="entry name" value="HIS_ACID_PHOSPHAT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3997430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="449" mass="52275" checksum="BEA9B0C372044595" modified="2020-12-02" version="1">MRKKIETKMDLNFVLFTCFISFVSGENVDGLELKMASVLYRHGDRSPVATFPKDEHRSYWKQGLGQLTEIGKKQEFSMGQFLKKRYVVNKFLNQTYLRKQVHCRCSDKDRCLMSAEAQMAGLYPPLYVKKPVQDDKEWQFWQLIPIHTVPQNHDKLLRPYDYNDCPRLQEIKQKSFSDPEYIEMEKKYKDFIQNVSINLGLSKSLTLNTIYKAYDVFFCQRAHNLSWPDWLTPDIFEKLEVLQDFDFVWMFNTPEKARLTGGVLLGEMIQNMKKFKKNPGNAKKLHVYSAHDTTVVALLSALKIYTGIPPPYSTAFLMELYYSKSTSKYMVRMFYRNDTSQPHRAYELSIPGCPLNSCSLDSFITLTSSAVPKDYEAECHVNQSSCSVKCKTNDCNEKTCKDTLTAVVIILLLAFIAFVGYIVRRCQVKRNAKSLRHFQQIQNEEWDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I983</accession>
    <name>A0A7D9I983_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A052008</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mab-21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004280">
        <property type="protein sequence ID" value="CAB4002185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I983"/>
    <dbReference type="OrthoDB" id="5947963at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1410.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046903">
        <property type="entry name" value="Mab-21-like_nuc_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046906">
        <property type="entry name" value="Mab-21_HhH/H2TH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024810">
        <property type="entry name" value="MAB21L/cGLR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656">
        <property type="entry name" value="CELL FATE DETERMINING PROTEIN MAB21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656:SF42">
        <property type="entry name" value="CYCLIC GMP-AMP SYNTHASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03281">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20266">
        <property type="entry name" value="Mab-21_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01265">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Mab-21-like nucleotidyltransferase" evidence="10">
        <location>
            <begin position="37"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="Mab-21-like HhH/H2TH-like" evidence="11">
        <location>
            <begin position="207"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="312"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="312"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF20266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4002185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="39637" checksum="CCBCA3EE531EEE2D" modified="2020-12-02" version="1">MNKVKEYVTKRVTQISDLIKAECSYFDFLQLRGSAEENLKIYYPDEFDFVLFSEKWKDKITFNERQNLPGFAYAMRQASTCLDRYQLTDPAGVIDPVQVRAHMKNLVVKALDKLGITTTVTEVGPVINFDIPSEEKSFPTIDIDLVLYIQQENWPTTATTVLSPELRALGVGLVPKVLEEDEEVWQISFSAIEIQLFKGIDADGGSRRKLLKIMKYLKLITEWPKTVSSYHLKTIIMKMNQEHPDRAYWIDANLVARFRELLNAFLNALKTKALPSFFIPTFNLLKGKDLTEAIQKVEKLIEIIKTDPNSLFPQQSAMCNPPQTSSSVSNKPLKNKSLKKRLRIHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IF87</accession>
    <name>A0A7D9IF87_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcription factor glial cells missing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A030251</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006037">
        <property type="protein sequence ID" value="CAB4008153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IF87"/>
    <dbReference type="OrthoDB" id="6241117at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042063">
        <property type="term" value="P:gliogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.670">
        <property type="entry name" value="GCM domain, large subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3530">
        <property type="entry name" value="GCM motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039791">
        <property type="entry name" value="GCM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036115">
        <property type="entry name" value="GCM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043020">
        <property type="entry name" value="GCM_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043021">
        <property type="entry name" value="GCM_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003902">
        <property type="entry name" value="Tscrpt_reg_GCM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12414">
        <property type="entry name" value="GLIAL CELLS MISSING RELATED/GLIDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12414:SF8">
        <property type="entry name" value="TRANSCRIPTION FACTOR GLIAL CELLS MISSING-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03615">
        <property type="entry name" value="GCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90073">
        <property type="entry name" value="GCM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50807">
        <property type="entry name" value="GCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="465"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="423"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="425"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4008153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="498" mass="58221" checksum="6FEE640C1D38B32E" modified="2020-12-02" version="1" fragment="single">SETKNCVLEDTQDHLDEYREWIDGSAKHRYSLTSREAQSHSSGWAMKYTNNHNKYVLKKTCVGVLVCSENCRLKDGRKIRIRPAISDKVRERQLGQQCPNSECKNGRIVHRKCTGNNGYPVTHFWVHHMDCIQFESKGRHDHPKPEAKRTSIRRRESAKYNMGENMLSQLSHDVYSNYNPQPFLPCDVTDGNEHVSVATAPMRELAREIFSEENNNTKFSKTYVLCRTLPNYIPGFDLLESRLLSCVTPECPLVLVTLYRSGAVDGMLEHMKHLTVMCSSPLQKIRVPKWHYLVHDFPRELQTLAVETIVNLMVDAQMQTLLNEFQYKSVSSLYKMLRQRILGTLRSFEEHYRICRYELMIRIQDPRILSSAEDMLTRLQSRYCTAKEYLNIDVLIKDGVLGAQVREFWYFWGSDIISSKPFGGSKRKKKLAKKHKTAKRKKTAKNKKQKTTYVIFHNKNQKTTYPLMSFFITTYVIFHKWAKNSKKSQKKIKNKKQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IFS2</accession>
    <name>A0A7D9IFS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001693</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006116">
        <property type="protein sequence ID" value="CAB4008417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IFS2"/>
    <dbReference type="OrthoDB" id="8196283at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14678" checksum="0EC0B588438D8569" modified="2020-12-02" version="1">MIPSCVPNELKDLIQVEEMLIARALPVMRVYIKPGGQRGYSRHCINLPQNVTELEASLPRYPEDLTVINVKVKGKENTFKAVRVRKQKMHHALVWLINNNPHYSELLINEDALNSLPENGGTTRSYDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGI0</accession>
    <name>A0A7D9IGI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062931</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006082">
        <property type="protein sequence ID" value="CAB4008301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IGI0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="6863" checksum="AF36F7274E66B22C" modified="2020-12-02" version="1">MKRMRTAADSDSATPESDVENSYNTDNEVETDSASESDSDNVDDTNSEVGDEYENDPMGSFTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IMH0</accession>
    <name>A0A7D9IMH0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006245">
        <property type="protein sequence ID" value="CAB4008840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IMH0"/>
    <dbReference type="OrthoDB" id="5961805at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098">
        <property type="entry name" value="RAPSYN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098:SF108">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="14"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="13"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1093" mass="120253" checksum="E71F2F5EC514CB72" modified="2020-12-02" version="1">MASEKNIAESDDNKTGLEISTAIGNLGIAYHILGLKISTAIGYRSGIASNNGNLGNAYLSLGEYQKAIDHYKTGLEISTAIGDRSGIASKNSNLGIAYHDLGDYHKAIDHYKTGLEISTAIGDRSGIAIDNGNLGIAYHDLGDYHKAIDHYKTGLEISTTIGDRSGIARKHGNLGNSYLSLGEYQKAIDHYKTGLEISTAIGDRSGIASKNGNLGYAYLSLGEYQKAIDHYKTGLEISTAIGDRSGIASENGNLGNAYFSLGEYQKAIDHYKTGLEISTAIGHRSGIARKHGNLGNSYLSLGEYKKAIDHYKTGLEISTAIGDRSGIATSNGNLGIAYHGLGEYHKAIDHYKTGLDISTDIGDRSGIASENGSLGNAYLSLGEYQKAIDHYKTGLEISTAIGDRSGIASNNGNLGNAYLSLGEYQKAIDHYKTGLEISTAIGDRSGIASENGNLGNAYFSLGEYQKAIDHYKTGLEISTAIGHRSGIARKHGNLGNSYLSLGEYKKAIDHYKTGLEISTAIGDRSGIATSNGNLGIAYHGLGEYHKAIDHYKTGLDISTDIGDRSGRAIILSNLGNAHIYLGEYEVGAPFLVKSISLLDKMFLHFVPDQNKLSFTIQYFVSHKRLMSCFLSLERIESALLVIDLGRAKELHCCVEKHKNSVDKDMFDYANVIWNRIEAREEQREIEEMKTLLHLGENDTSVLVFAFDLEAFLNVWVLNDEVIFRKLDACLETLQFLIMELLGRNKVSVVRNSSFCNSDSVVDTHNQMIFPFEMPNGKALPKNAFENTACYSDLSNREILEKLFKILVEPVKDLVNGNQLIVVPDRQLFFTPFSALIDENGSYLSNSYSVQITPSLHTLKCTMEQSCYSNFGFALCVGDPTYDLPYAAEEVKYVSKLFQTRPFLGHEARKEVVLQLLSGASIIHIAAHGEPNRGEIMLAPNSSHVQPCLAVPEPESYFLTQRDILNIPVQARLVVLCCCHTRQGEITSEGVIGITRAFLAAGARCVLATLWPIDDSATKEFMEKFYWELCQETRVCEALRRTVNLFQKHEIGAYRSSSMWAPFTIYGEDAKFRKNEIKQIREKSRKMFSDFVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IP59</accession>
    <name>A0A7D9IP59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031129</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008672">
        <property type="protein sequence ID" value="CAB4015326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IP59"/>
    <dbReference type="OrthoDB" id="8961048at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="29530" checksum="90102E8D51AAC9A4" modified="2020-12-02" version="1" fragment="single">QLDISSLSPKTAIKIFNGVISPILLYNSEVWGAYQKNDYNKWDNSQTEKAHLRFCKLYLGVNRKATNTACRAELGKFPLLITIQKNIINYLKHILELPDTTIVKQALFVSRDLYKNGKESFYSNAMNMLKLYYSQDDETTNIEIALRNIDTKTIVNGIKEKYVEFWKHKITKSPKLSFFCQFKKDYKLEDYLHLIKNPIQRKNFSKFRISNHKLEIEYGRYKNIPREQRLCKLCNSGEVEDEFHVAFACKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRY1</accession>
    <name>A0A7D9IRY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045760</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007476">
        <property type="protein sequence ID" value="CAB4012351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRY1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13511" checksum="C52BB59394FC95DB" modified="2020-12-02" version="1">MPKESNQPKSDSRALRRLDPYKRNPPEREESPERSSRHSSGEKARSRPSQSASRSETRSRSRSPSEPPQWARELLKNQEDYSKEMKRLQSEIERDRASMSTRDCGQTMGVVLSTFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ITZ6</accession>
    <name>A0A7D9ITZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079907</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007957">
        <property type="protein sequence ID" value="CAB4013630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ITZ6"/>
    <dbReference type="OrthoDB" id="5989324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="492" mass="55927" checksum="A833F3F4EE5EC154" modified="2020-12-02" version="1" fragment="single">MHAPPITRRVRSEYTPWLTKDIMKKNRNRDYLKKKAVKTGSLNMHQAYKKARNEVTKNIKQAKAKHFIHCFETTTKNPQEMWKTINKLINKKSKTTTISEIKTENGSVTDAKEITNVLNDYFCNIGSNLAENLERTPIQPSSYIDQSETEFKLHFVTENEVYKYLSNVKPTKSTGYDQIPPKLIKDAAGVISRSLTKIFNESIVSGIFPDDLKIAVLSPIFKKDDRSCCGNYRPISVLSVIAKVLEKIAFDQLCSYLHSNSIIANQQSGFRKNHSTETSLLTVTNRWYCNMDNGLLNGVLFLDLKKAFDCVDHQILLNKLAMYGIRGITLNWFKSYLSNRKQTCKANNIFSEMKPIKTGVPQGSNLGPLLFIIYVNDLPNCLDSASASMFADDTNITATGQTVQQLQSNLNNNLEKVHHWLLANKLTLSHNKTEYMIIGSRQKIINIQEEPIISIGNEPVKKINKCKTLGVIIDDKLMWKDHINEINAKVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J579</accession>
    <name>A0A7D9J579_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chromatin accessibility complex 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A073738</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011833">
        <property type="protein sequence ID" value="CAB4022154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J579"/>
    <dbReference type="OrthoDB" id="1291358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008623">
        <property type="term" value="C:CHRAC"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046982">
        <property type="term" value="F:protein heterodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006338">
        <property type="term" value="P:chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22924">
        <property type="entry name" value="HFD_CHRAC1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.20.10">
        <property type="entry name" value="Histone, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003958">
        <property type="entry name" value="CBFA_NFYB_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009072">
        <property type="entry name" value="Histone-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050568">
        <property type="entry name" value="Transcr_DNA_Rep_Reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10252:SF54">
        <property type="entry name" value="CHROMATIN ACCESSIBILITY COMPLEX PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10252">
        <property type="entry name" value="HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00808">
        <property type="entry name" value="CBFD_NFYB_HMF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47113">
        <property type="entry name" value="Histone-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4022154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="74" mass="8218" checksum="62243B157DC893C7" modified="2020-12-02" version="1">MAEKIEGEKKLVSLPLARIKTIMKSSPDMSHAGQESIFMVAKATELFVEYLAKEAHKEGKKPEVSYKSLCSQSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6N0</accession>
    <name>A0A7D9J6N0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">RNA polymerase-associated RTF1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A005284</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nucleoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012303">
        <property type="protein sequence ID" value="CAB4023079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6N0"/>
    <dbReference type="OrthoDB" id="166375at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016593">
        <property type="term" value="C:Cdc73/Paf1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990269">
        <property type="term" value="F:RNA polymerase II C-terminal domain phosphoserine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.70.200:FF:000001">
        <property type="entry name" value="RNA polymerase-associated protein RTF1 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.200">
        <property type="entry name" value="Plus-3 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004343">
        <property type="entry name" value="Plus-3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036128">
        <property type="entry name" value="Plus3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13115">
        <property type="entry name" value="RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13115:SF8">
        <property type="entry name" value="RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03126">
        <property type="entry name" value="Plus-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00719">
        <property type="entry name" value="Plus3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159042">
        <property type="entry name" value="Plus3-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51360">
        <property type="entry name" value="PLUS3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0010">Activator</keyword>
    <keyword evidence="4 8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="181"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="569"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="619"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="461"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="21"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="45"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="61"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="83"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="103"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="142"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="181"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="193"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="215"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="236"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="254"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="571"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="631"/>
            <end position="642"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4023079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="658" mass="75447" checksum="008834D13026EA1E" modified="2020-12-02" version="1">MSTKKKDLDSKKKRKRVVVESESDGDDSDEDLEEELLSLAKRARTQQQESTPQPTKQNTESDSDSESSEGSDDEWTIDDKPVKGKVKKNGTKKPPKKPASESGETDDSSSDSSDDSDSGSSSLSQENEGFDDGLDEYCIGDQADRDRLEKMTEKEREQEIFNRLERREAMKTRQEIKQKLKLAKKKEKKKKEKEKAVNEKDGVGGIAFSRSGRKKAMEEKKVKAFNELKQRRHEKKEKALLEKKEPWKTNEVYSSDDDAEEEQEEQVEQAASSEDESDEEAMEETEEKVSSVEDVEKVRLSRHKMEKWVHMPFFEDLVKGCFVRIGIGQNEGRSIYRVAQIMGVVETAKVYSLGSTRTNKGLRLKHGKQERVFRLEFVSNQGFTDTEFTRWVAEMESNDIPVPTMDEVDNKLQELQNSKNYSYQDNDVDKIVAEKTKFRKTPFNYAMKKNQLLRSKEIAEQQGNLDESQTLQSELEELEERAQELDKMRSRGLSAISYINERNRKKNIVEAEKAIVEEAKTDEKKADPFTRRKTLPQLVAKINKGPDFTPEQIRRLQEEAAADNIHVNIPGASQTPMAGDQSLDSTDTSKDHNRRPSLTTENEDLFNAHDFDIKIELDFPLPDNRPASATPKATNHNKQNAPRRSLNLEDYKKRRGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JA93</accession>
    <name>A0A7D9JA93_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038262</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013484">
        <property type="protein sequence ID" value="CAB4025212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JA93"/>
    <dbReference type="OrthoDB" id="427924at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="23"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22613" checksum="B33F70793198FB8E" modified="2020-12-02" version="1">MPHHSTVLAPLNNLLKKNVPWKWTKSEDAAFKAAKNLLLNSRTLVHYNESLPLVLSCDASSYGAGAVLSHVINGKHQPIAFASCTLTEAQRNYSQLEKEAFSIIFGLTHTASRLQRWALILASYHYKIEYRSTTAHADADSMSRLPLPQTWCPKSENVECYFFEAGVVTNVTAEMIKKKTQVDPVLSLVYRYIQSGWPMLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBV4</accession>
    <name>A0A7D9JBV4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010443</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014047">
        <property type="protein sequence ID" value="CAB4026163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBV4"/>
    <dbReference type="OrthoDB" id="5980566at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="238"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="374" mass="42851" checksum="E5B2D9F4461021B1" modified="2020-12-02" version="1" fragment="single">HFERVCRAKQRQRDSRPREVNVLGEFEDGKVSEDDLLTFSVESNNEGSSKNDWHVQLKFGKTDLNFKLDTGADCNVISQSSFEQLSLTNTRIFKNKSKLKMFDGRKITPKGKVSLECEYKGKFTVLDFVLVEQDLPSILGLKSCLELGLVKRVYSLEVDPPKIETEFSDVFEGLGEIKDVQYQIKIDPVSIPVVHPPRRVTMALRKPLEEELRRMEKLGVIEKKNEPTAWVHSLVIARKANNKIRVCMDPSDLNKVVMREHFPMQTVEEVVSRMPNAKVFSVLDANHGFWQVKLANESSNLATFNTPFGRYSYKRLPFGIASAPEVFQSIMSNMFSDIEGVEVIVDDLVVWGEDVTKHDERLRLVLERCRDKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JEC2</accession>
    <name>A0A7D9JEC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002011</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015130">
        <property type="protein sequence ID" value="CAB4027923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JEC2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8651" checksum="2CA48EFDC300BA59" modified="2020-12-02" version="1" fragment="single">RVGGVILDHFIVLVCVVVLGTLAVAYIVWKCVHPERWPTYTVAAYYLRIGIENTAVQSENTTNGRDKRQSPGAIQLPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMT3</accession>
    <name>A0A7D9JMT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018487">
        <property type="protein sequence ID" value="CAB4032549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMT3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="79" mass="8902" checksum="5B146D49E3D9866A" modified="2020-12-02" version="1" fragment="single">LSDENGVKIFTGQGIEKTNDVVCAMYHRNIYSHDASKDSLLALKHLGILQEYEKMSNSYTKRDNIGQKEFSRKGGSVHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JT28</accession>
    <name>A0A7D9JT28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052911</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021426">
        <property type="protein sequence ID" value="CAB4035848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JT28"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8854" checksum="60368215C6554203" modified="2020-12-02" version="1">MTDLMLIKGNDNCWSAKERKETLQRALEFYMEKRRKVKLDSNTVDEETPLKKRIIEKDAITIDDNDDSSSSSEIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K4F8</accession>
    <name>A0A7D9K4F8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004183</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028027">
        <property type="protein sequence ID" value="CAB4041253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K4F8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="97" mass="11284" checksum="A9222790AAD0FDC8" modified="2020-12-02" version="1" fragment="single">VLFVLENHRLRFQQQMRTTINGPVRNQRQNLMTGNMRNDSYFPANRTMDHAKSYRTKQGQTIHRSRTAGTVLDGVPSVRTLRHENKINFGFTAQDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K6X4</accession>
    <name>A0A7D9K6X4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027921">
        <property type="protein sequence ID" value="CAB4041193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K6X4"/>
    <dbReference type="OrthoDB" id="5980437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF31">
        <property type="entry name" value="OS01G0873500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="204"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="230"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="293" mass="33165" checksum="CF1115BBA5432928" modified="2020-12-02" version="1" fragment="single">MRLLKLKDTILQSEEEADATKNEECYAELIQCLDDTSLSLVMRDATDDGRKALQILRDHYANQGKPRIITLYTELTSLEKALHETVTDYLIRAEKAITALKNAKETLSDGLIIAMILKGLPDSYKPFSIHVTQRASEITFAKFKSMLRSFEETEKLNTKPKVDQVMKAEFPLQTMTCYGCGKRGHLVRECPAKSEKKWCNYHKSTTHSDSTCRSQQKSKDQTKQVSENENASKDEHSFAFKVNDEATGKINRMGMLVDTGATSHIVTTDILKQIDMTFKPSKHYIELADGTRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K726</accession>
    <name>A0A7D9K726_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A086905</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020027994">
        <property type="protein sequence ID" value="CAB4041229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K726"/>
    <dbReference type="OrthoDB" id="432234at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="2"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4041229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21131" checksum="034560072ABAE801" modified="2020-12-02" version="1" fragment="single">LQESVNNIGYIIIDEYSMLGQVTSGWIDKRCKQATGCKLCNDKVFGGKSFILTGDPGQLPPVADKPLYHARPSNAVAEHGHQVYHMFDKVVKLTVNQRVQGMTSEQVQFRYLLLRLRKGDSTVDDSKLLLTRRPSNVTNLCDFEDSTRLFYSNEQVGNYNHEQLTNLEHPIAHINTRHSSALAKKIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAU8</accession>
    <name>A0A7D9KAU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032098">
        <property type="protein sequence ID" value="CAB4043322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAU8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7412" checksum="878DF31A1342139E" modified="2020-12-02" version="1" fragment="single">LLVHSRTVSITNQLYLRNYVGNKFAFVFWNDDQQFSVVKEEDITGEAKLGEIRPVAWRVKKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1H9</accession>
    <name>A0A7D9L1H9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018629</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012719">
        <property type="protein sequence ID" value="CAB4023859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1H9"/>
    <dbReference type="OrthoDB" id="2384350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="20476" checksum="94F0D955C1115FA5" modified="2020-12-02" version="1">MSLVHGGPAIRCFSPGLYHSLVHGVRSASVDISDVYDPDLRNYLLALINCQSVPDAQTCLTQPSFQTVLDLAGTLKQVKSLDDIQMIANESARWFLLGRVCSSLERLKDGLNVLGVLGAVFENPDIFRPAFCYVPQPLTVDLLSSLFTNTTRSELGSNAHAKESLILSFWNDYLQDVEEHTVDEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1Q9</accession>
    <name>A0A7D9L1Q9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein-PII uridylyltransferase N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A086477</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012978">
        <property type="protein sequence ID" value="CAB4024355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1Q9"/>
    <dbReference type="OrthoDB" id="5986190at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008773">
        <property type="term" value="F:[protein-PII] uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005105">
        <property type="entry name" value="GlnD_Uridyltrans_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19959:SF119">
        <property type="entry name" value="FUNGAL LIPASE-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19959">
        <property type="entry name" value="KINESIN LIGHT CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03445">
        <property type="entry name" value="DUF294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="Protein-PII uridylyltransferase N-terminal" evidence="3">
        <location>
            <begin position="184"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4024355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="902" mass="103954" checksum="73A147A7A05BDAB2" modified="2020-12-02" version="1">MEKRSKALYERFHATAKRHLENNKLEDAERGFASALRQVYMQKNKLYQLAIALRGLGFVYKARGSIHKNAEDLVKASGLFIASLTRLQQCNAVSEKKHNVRTVLDSEIIQLQDEIRNVHAIFIDEIIQSPHDGSSNDFQRHEHYKKSLQEIRESCQLKISFLDNMPSLDPAVRDIRVEKERIEHTQRLYKDISKSMKELITCMIDDCMQVMSSPPCKYSILSLGSTAREEATPYSDLEFCILVEKNTDVVLQYFTDFTNFLQLKFVELGETILPSLGIKSLNNYCSGNKEDDWFYDDGQRGFSFDGAMPWASKTPKGRDKTLNKPWVQSLIKTPEDMAGLLSETSIFKEGYHVADVLSTCHLICGDCSLFEDYSDFMKEYIDETVNDHNSAETNIGSKYRVIRMPWKQRILQELVEVQKEYHNSLENYVRRPGISYAVKTDIYRFPSLVVGNIGKYFDIQCSSSWQAIDKLESAKILSLEGAHNLRTALGIAAEFRLRTYLSNQCQSEHFNSLVNLAEDLPDNLSLLLLRFFFTVVPLEEAIEKLASENLLHVMNFEFYNNNPKITARMYLQFRKYSKAEEILTDMFVNALHLSSNNGEDQEVAEICKMLGNALKLQKRESEAIKYYRIALEINERVYMRIPQPSNLKSVADSYTNYGVALRSLGQIKEALSCYTKALEIRIVLFAGSSTAVNQIFYLQDVADGHYNLSELYKAESPIDVVKFFLHNEQAMEIARVLLEQYNVTYYHYTSLLFNQGLCLYNLRRFEESAKAYQEALELLHRYMKYNISTLREATLLNNLGNAVMELGDLGKARTLHNRAYEIRIHIHGTKDDDSLARSLNNFGLIHEYEGDYKEAHEFYIQARDMSIRIHGEDSADELYTRNATRMTEKCKTNHDEGKCVIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LED1</accession>
    <name>A0A7D9LED1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005207</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018199">
        <property type="protein sequence ID" value="CAB4032185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LED1"/>
    <dbReference type="OrthoDB" id="5969298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17971" checksum="6D3C5391086BC56B" modified="2020-12-02" version="1" fragment="single">TGSDIADLEDFKREATEILENAKFPVHKWESNVEELDNESNPSKILGHKWNKREDTLEIRAEPTKEETPVTKRHILKELSSIYDPLEIISPTMVEGKRIYREACDEKVGWNSEVSTSTSKDWIKWRQQLRNVKIPRTKSSKGDSKGESYTFAFIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LGR5</accession>
    <name>A0A7D9LGR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc finger BED domain-containing 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A002477</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018361">
        <property type="protein sequence ID" value="CAB4032388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LGR5"/>
    <dbReference type="OrthoDB" id="117690at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1070">
        <property type="entry name" value="Zinc finger, BED domain-containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052035">
        <property type="entry name" value="ZnF_BED_domain_contain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481:SF10">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140996">
        <property type="entry name" value="Hermes dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4032388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="541" mass="62713" checksum="F7ADF062F760F7DC" modified="2020-12-02" version="1">MKKQLSIEDSLTSKKIWDINDSRSRAIHKKIIKMMAVDNQPFSMVEDDGFIDLMAHLRPHYLLPSRRYFADKMLPKVYKELRTIVQDELAEPDGDYISFTSDIWTCSVSKETFISLSGHWVKKDFKRVNAVLCGSHFPGSHTGINISEMFQNMWDDWGIQEVRRNLLVRDGAANMSLGDAILSQRSIIDLLAKCRRLATHFNHSALACTELKSLQEVQEQGKTPLLLVQDVPTRWNSSYLMVERVVKLKRPIQLYLYDHDNLPTITANEWQISERFLHILKPFFDLTKEMSGEYSILSDVIPNIATLELFLSKIGQGDQGVQSTREELLRALRKRFLSPEAEALNVMNENAYVTATCIDPRYKDHFFPRADDKQQAKAWLVQELFLVHQKLHGEEDNNNQESQLPPHSPQRKRRKEDDLFRSCFMEIVTQRAATASTTSTRQQGCRTSKDVQDVAQEVDSFLSLPLINRKCDPLEWWKNAIQFPLMQELARKLLCTPSSSVFSERMYSEYGNIFEEKRSRLLPKNGESLLFIHHNGREFQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LH25</accession>
    <name>A0A7D9LH25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017541</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018655">
        <property type="protein sequence ID" value="CAB4032747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LH25"/>
    <dbReference type="OrthoDB" id="5988870at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14720" checksum="C637087FC6016870" modified="2020-12-02" version="1" fragment="single">MAGDFYGIPDAPIINPSFPDRVDDGARQRFKNAYNTLAVTPNEGKYKEQLDKLLKLLADDTKNAGKPGKCLHSNREWDEATGGWWPFGVPYRYGQMMKLAEKNYDHFQPQAKTAYVVGHELAIEKALEAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LMW1</accession>
    <name>A0A7D9LMW1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Integrin beta</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A030882</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Single-pass type I membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the integrin beta chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022091">
        <property type="protein sequence ID" value="CAB4036485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LMW1"/>
    <dbReference type="OrthoDB" id="410592at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005925">
        <property type="term" value="C:focal adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008305">
        <property type="term" value="C:integrin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005178">
        <property type="term" value="F:integrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033627">
        <property type="term" value="P:cell adhesion mediated by integrin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016477">
        <property type="term" value="P:cell migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007160">
        <property type="term" value="P:cell-matrix adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007229">
        <property type="term" value="P:integrin-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015812">
        <property type="entry name" value="Integrin_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002369">
        <property type="entry name" value="Integrin_bsu_VWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10082">
        <property type="entry name" value="INTEGRIN BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10082:SF60">
        <property type="entry name" value="INTEGRIN BETA-PS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00362">
        <property type="entry name" value="Integrin_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01186">
        <property type="entry name" value="INTEGRINB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0130">Cell adhesion</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4 8 10" id="KW-0401">Integrin</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="Integrin beta subunit VWA" evidence="9">
        <location>
            <begin position="49"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4036485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13601" checksum="9673D9FC3C281839" modified="2020-12-02" version="1">MTVDGNPDPQPTLEEEVLTDLNQITPKKVSAKVRVGEPITFTLTIEPSANYPVDFYILMDLSATMDDDLNTLKKLALNICKFGKSNTVTYSLIHVVHSKRFITNMAYFCFGENLAELMPQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQ54</accession>
    <name>A0A7D9LQ54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003458</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022501">
        <property type="protein sequence ID" value="CAB4036869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQ54"/>
    <dbReference type="OrthoDB" id="102442at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="12361" checksum="B542CC4C2F93CD1A" modified="2020-12-02" version="1">MYLFLRYDDTSKKLNTCEENLQLAETKLCHSEKILEKTIRDKRKMEGDVDVLEKENYALKEAVETSKCSLEEEILLRVDIEHQLQSTKEEMNFKQQMFNKDLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M4Q0</accession>
    <name>A0A7D9M4Q0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Collagen alpha-6(VI) chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A088131</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032300">
        <property type="protein sequence ID" value="CAB4043414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M4Q0"/>
    <dbReference type="OrthoDB" id="5317514at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005581">
        <property type="term" value="C:collagen trimer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007154">
        <property type="term" value="P:cell communication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01450">
        <property type="entry name" value="vWFA_subfamily_ECM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038081">
        <property type="entry name" value="CalX-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003644">
        <property type="entry name" value="Calx_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050525">
        <property type="entry name" value="ECM_Assembly_Org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020">
        <property type="entry name" value="COLLAGEN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020:SF20">
        <property type="entry name" value="PH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03160">
        <property type="entry name" value="Calx-beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00453">
        <property type="entry name" value="VWFADOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00237">
        <property type="entry name" value="Calx_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141072">
        <property type="entry name" value="CalX-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0176">Collagen</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="125"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="12"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="145"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4043414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="469" mass="50683" checksum="2F1C574072F18314" modified="2020-12-02" version="1" fragment="single">KPHGDLSHDKSQAGSDHNQNKPVKSVYAYAGIEFRPLQVTDEGAFSTAIIEGSKPDSPTPANVPQNELLAYEEVTIPSGNFDKINPENILVKSNDSGGGNNALAAFNADMQHSTHDAHADTYAQVDNSSHQTRKKPPPMPKPYSKSKDNVDAPDGGKKKPPPIPKPYGAQYKDEEPSKPPGVTVNFTKKTYSGKEGEPALPEIIVSAGNISEPITISVTPSAKTAGDDDFVPQTVDVTFEPGETGPKSIPINIIDDDVVESKEEFTVTMSSSSPGVTVGEPATVIIKDNDKSAPCKPKTDLIFVLDRSGSIAPGDFDKMREFVKEIAKELKVGERNEAGELIGQAAIVTFSEEGKKRITLAESQDANKFYDVVDRMPGPLLQGRTKTHRGLAIADKEIAIKQAGYREDDPAVKKMIMVVTDGEQTKESVRRGFVYVGEAMKPFFNRNMDVFAIGVGLDNDAAINEVKDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M542</accession>
    <name>A0A7D9M542_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011591</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032752">
        <property type="protein sequence ID" value="CAB4043613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M542"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11540" checksum="98C33165328CFC98" modified="2020-12-02" version="1" fragment="single">EDVSVAGKRSCVPEGNTPGKPPAKVRTRTESEASRKRCLFGKDNITSEKSKWTTSEDSAIVQYICFYWEDAHRNKWPTMKNLYFWDGCAQAVMNICKTTRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M6Q6</accession>
    <name>A0A7D9M6Q6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042387</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029828">
        <property type="protein sequence ID" value="CAB4042283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M6Q6"/>
    <dbReference type="OrthoDB" id="2435398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21710" checksum="C41F8BA56A6AA93A" modified="2020-12-02" version="1">MLTTSTPISSGGTNKTKEVSNSNPHINPVVVRTANDACFTPIKVPDNTETFMAIDQSCEKTLHHDLVPLPKSINHSQEELTLTKVVFPVRNNSVQSKIGELSHTGSRTNPIQKEQSCHYNVPGRQSCSSYLHDRGQQFRSIPVRITHRPLPVNPEKVNKHRRAYRSQVFRHRHQTDWLRHLELVRKVIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FF64</accession>
    <name>A0A6S7FF64_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000004">
        <property type="protein sequence ID" value="CAB3976602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FF64"/>
    <dbReference type="OrthoDB" id="206452at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd15457">
        <property type="entry name" value="NADAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.40">
        <property type="entry name" value="YbiA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012816">
        <property type="entry name" value="NADAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037238">
        <property type="entry name" value="YbiA-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02464">
        <property type="entry name" value="ribofla_fusion"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08719">
        <property type="entry name" value="NADAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143990">
        <property type="entry name" value="YbiA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18914" checksum="EAE3E69F053DDC42" modified="2020-12-02" version="1">MAEAKEEFTFFWKKHSPFSQWHESSFTVDGMTFNCAEQYMMYQKAVVFNDQEIAEEIQQAKDPITQKKLGRQVKNFDAQIWNEKCREIVKKGNMAKFSQNAGLKKKLLATGDTVLVEASPVDRIWGIGLAEDDPRAKDKSQWQGTNWLGYALTQVRNELRENTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPT2</accession>
    <name>A0A6S7FPT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035374</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000152">
        <property type="protein sequence ID" value="CAB3978912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPT2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="14244" checksum="0968286A3C1D16B5" modified="2020-12-02" version="1">MARKTAKANVTRKINEIAELVKDINNLERVQSVYYDFEESLRKFTLAHGNYHANLTDEDDVQESETYYSVEVRRTSAFKDRIKTWLENNEFCHKNRTEQFNEIRPSDSVSNIGSRTDCGSKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQ93</accession>
    <name>A0A6S7FQ93_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA (cytosine-5-)-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A075192</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020000434">
        <property type="protein sequence ID" value="CAB3981845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQ93"/>
    <dbReference type="OrthoDB" id="641149at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11725">
        <property type="entry name" value="ADDz_Dnmt3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025766">
        <property type="entry name" value="ADD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050390">
        <property type="entry name" value="C5-Methyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040552">
        <property type="entry name" value="DNMT3_ADD_GATA1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049554">
        <property type="entry name" value="DNMT3_ADD_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23068:SF25">
        <property type="entry name" value="DNA (CYTOSINE-5)-METHYLTRANSFERASE DRM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23068">
        <property type="entry name" value="DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17980">
        <property type="entry name" value="ADD_DNMT3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21255">
        <property type="entry name" value="DNMT3_ADD_GATA1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51533">
        <property type="entry name" value="ADD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="PHD-type" evidence="11">
        <location>
            <begin position="51"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3981845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="496" mass="56016" checksum="BB99B07E2452A8F9" modified="2020-12-02" version="1" fragment="single">SMPKLISQLVLEQAQMQIPSKPNFGSRQVLEPPCLSGLQMLYKGKASGTDKMIRQRGIIRDICLGCGDIKISVHHPLFHGSLCEECKETFLECVYLFDEDGYQMYCTICGDGKEVFMCESSGCFRSYCAVCLELICGAGTVDKISSLDKWCCILCLDVKVGLLEKREDWQEQLRDLFASDKEQEYLAPKICAPVPPEHRQPLRVLSLFDGIGTGLLALKELGLDVHVYIASEIDENATRVVKVQHCEDDVVQFVGDIEQITREQIEMWGPFDLVIGASPCNDLSIANPARQGIYEGSGRLFFEYFRLLMYAKPQRDDSRPFFWLFENVVSMRAVDKRTISRFLQCNPVVVDAKDISPARRARYFWGNLPGMNRPTIPVAGDKLSLQSCLEPHCGRKARFTKIQTVTTKANSIKQTKQGILPVEVSDSDVTEDLLWCTEMERLFGFPAHYTDVGNMGKNQRQKLLGKSWSVPVIRHLLSPLREYFCSKSSAEIQNTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSH2</accession>
    <name>A0A6S7FSH2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062162</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000141">
        <property type="protein sequence ID" value="CAB3978786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSH2"/>
    <dbReference type="OrthoDB" id="8036689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="263"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="176"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="36891" checksum="0EF654502DEBC73C" modified="2020-12-02" version="1" fragment="single">WNRWKNQLTGLENVSANRCYHPKNFGAVVRNEIHAFSDASKEAVGVAAYLKQLSQKGEAVKKIQTELDLKIDDVKFYTDSKVVLGYISNDARRFHVYVANRVQVIRDTSGPHQWNYVDTSTNPADLATRGTTAKGLIESDWLEGPTFLKMNQSNEPSIDEAASPIIDDITINENDPEIRNQKTNKDVRSLDDGQNVENEHRHPTSKDSNKSAKIAIIKAVQNEVFAHDISVLKRENKETDCCDQLKEQRRALRKSNPAGLDPPKWQEREKNLVDGDVVLVKDRDLHRNDWSMGRVMESIKSEDGEVRKAKVVISKEGSKKDCIPSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYR1</accession>
    <name>A0A6S7FYR1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Mitochondrial import inner membrane translocase subunit TIM50</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A032138</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Component of the TIM23 complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 12">Mitochondrion inner membrane</location>
            <topology evidence="1 12">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the TIM50 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000878">
        <property type="protein sequence ID" value="CAB3985484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYR1"/>
    <dbReference type="OrthoDB" id="287041at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005744">
        <property type="term" value="C:TIM23 mitochondrial import inner membrane translocase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07521">
        <property type="entry name" value="HAD_FCP1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1000:FF:000019">
        <property type="entry name" value="Mitochondrial import inner membrane translocase subunit TIM50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004274">
        <property type="entry name" value="FCP1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050365">
        <property type="entry name" value="TIM50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12210">
        <property type="entry name" value="DULLARD PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03031">
        <property type="entry name" value="NIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00577">
        <property type="entry name" value="CPDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50969">
        <property type="entry name" value="FCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 12" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="5" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="6 12" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 12" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="9 12" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU365079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3985484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="367" mass="41883" checksum="D3E666B96915AD38" modified="2020-12-02" version="1">MAVNRAILNLKIKSCCFQHAASLIRAKPLLISPHIRQLSFQCWRTNGMSFLKRFLPQYSQVGRYYEKAKERKGPSLRTWLSVGVGFMVGGAGIVVYLGWPDTGIDGKSVALYANEPAPLAYLYRARDKLKETWELFSEPSSELLLPEPLTEPYYQPPYTLVLEMTDVLIHPEYDRQSGWRFRKRPGVEAFLSQCKTPLFEIVVYTHENGFGAMPILEGLDPNGFVTYRLFRDATKYTNGTHVKDLGSLNRDLSKVIMIDCDAKATTGYERNTIVLKKWEGDPSDRTLFDLTPLLLAIATSNVEDVRTVLDYYRSEDDVIEAFKRNQARLREQQEILSQKQKEQGGQWGGLFGRRLFGQSTQSVKQDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0L8</accession>
    <name>A0A6S7G0L8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000232">
        <property type="protein sequence ID" value="CAB3979810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0L8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13981" checksum="D329FCF5003E1AF5" modified="2020-12-02" version="1">MSDLKGALDEIKHSLTQGSHLLDNFSGHCFSPHLVDDVVKNCSRIFTIGDILDTCPVFSFENAIKILVIQEIFLDIPNFDYTMELLIGSKVSKETYLWELDEALKDVNVHNELSSDSDDDLPHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2D8</accession>
    <name>A0A6S7G2D8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A086277</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000495">
        <property type="protein sequence ID" value="CAB3982406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2D8"/>
    <dbReference type="OrthoDB" id="2344127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="538"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="583"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="608"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="385"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="394"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3982406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="629" mass="71299" checksum="16658707100A0E06" modified="2020-12-02" version="1">MKDAVSNILEQFNNRFGKYPKFAQFDQGTEFYNREVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDLTDNYNSSVNRSIKTSPDSVNESNWTEVWKTLFSHNLGKPSEPKFAVGESVRISKYKSVFTKGYEANFTEELFTVTEVYHGHPNTYTIKDSADEPIIGRFYEQELYSAEGREPDFRIEKVLRRRTVKGKKMALVKWLGYDDKFNRPSGSTTVPEVNFVEDPNNVLPDVLDAFNESFDTDWDEIEARLEKLNKISTANKKRDFENQVERVQAVTRVIKGKEGLILDPRNRYVRELIKRSSVRTLKDGTEVLVFRSEQGIDKSGTQIMKRGKTKNLVYSKDSPALREYKNLLKKIKEVPTNPDNIIGSDEDTREEPQFDESSEEYANRENIELIDIGAKLGDLPGLTMQENNELRGVLNLPDGSSIEGRTGPNGALQVQADYFNEAIGETVKRATSVEGTTEYNSLIERINSLKEARDRTLEQRTVEEAREAQLEDISRLRRFIDWVGKEKVGLVGIAVSTASLITALLIHARGAIVKTAKATGKVAKALANLAKKAGPILVPILNAIATALSWGAKGISWLASHLWVLAIAAALMVYNNYSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2Z2</accession>
    <name>A0A6S7G2Z2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080106</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001158">
        <property type="protein sequence ID" value="CAB3987344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2Z2"/>
    <dbReference type="OrthoDB" id="2403749at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28478" checksum="C01688A95A649CA3" modified="2020-12-02" version="1">MKDAVSNILEQFNNRFGKYPKFAQFDQGTEFYNKDVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDLTDNYNSSVNRSIKATPDSVNDSNWTEVWKTLFSHNLGKPSEPKFAVGESVRISKYKSVFTKGYEANFTEELFTVTEVYHGHPNTYTIKDSADEPIIGRFYEQELHSAEGREPDFKIEKVLRRRTLKGKKMALVKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3Q8</accession>
    <name>A0A6S7G3Q8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Solute carrier family 2, facilitated glucose transporter member 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A069617</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-glucose(out) = D-glucose(in)</text>
            <dbReference type="Rhea" id="RHEA:60376"/>
            <dbReference type="ChEBI" id="CHEBI:4167"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. Glucose transporter subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001208">
        <property type="protein sequence ID" value="CAB3987644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3Q8"/>
    <dbReference type="OrthoDB" id="4142200at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904659">
        <property type="term" value="P:D-glucose transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050820">
        <property type="entry name" value="MFS_Sugar_Transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003663">
        <property type="entry name" value="Sugar/inositol_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48023">
        <property type="entry name" value="D-XYLOSE-PROTON SYMPORTER-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48023:SF4">
        <property type="entry name" value="D-XYLOSE-PROTON SYMPORTER-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00171">
        <property type="entry name" value="SUGRTRNSPORT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="68"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="152"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="185"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="217"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="404"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="438"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="470"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="367"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="372"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3987644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="550" mass="60954" checksum="DD3F59696C00A666" modified="2020-12-02" version="1">MTQQNIVGRLIVGFGTSLSAIAECIYIAEIAPPKKRGLLVSVNEIGIASGLLLAYLVNFIFINTDNGWRYMFGISGIPALIQGYGIIFLPPSPRWLICQGQDAKALRVMTLLNHGGEPEEEISKMKDALNLEQNYNICYLFGRHENMRDRMLVGLGLVFFQQFTGQPSVLYYAPSIFENIGFRSHSAATLATVGIGLTKFFATIITLFLVDKAGRRRFLLFGSIIMTVSICLLYTVTFCFPGSYHQEICESAPKHHNVHTNLTLVPSYSINTTTCTYIFNNQPSSHHLGKSIGLSGQPSFTTLPIYNTQSHHDLQKTQNWNFSLSKTRTPFTQYNSPTPASVIHSNSPLLSTSTELGKDQDKGILVCSPRPTTSNVKTNSTTKNQSTTSSYEGEMPNVVKYVTVFSLMAFAGGYSSGYGPVGWLMLSEIFPTSIKGRAFAATTVLNWSSNLVVSLTMLDLIDSVGVSWTFFVYGILGIVAIIFIYKFVPETKNRSLEEINALFSTRNSVLQDCSCFPSKHTLCCNRYSSISSSTQQDHTLLHDQEWEVES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4S1</accession>
    <name>A0A6S7G4S1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000602">
        <property type="protein sequence ID" value="CAB3983336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4S1"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="151"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29351" checksum="143934F9B6EE3C49" modified="2020-12-02" version="1">MPSNIRLFTYGSTIPLNILGTITVKVERNGKQILAQFVVVNNRGTGCLLGHKSATELDLLHVANSVSIQSEDISSKISAKFPKVFEGVGKLNDFQQTIHVDPKIHPVAQAPRRVPFHVRRKVEAKLDELQRLDIIEPVTGPTPWVSPLVVVPKPNGEVRICVDMRQVNTAVIRERYPIPTVEETLQDLTAACVFSKLDLRWGYHQIELDEQSRHYTTFATHTGLYRYKRLMFGVSAAPEIYQHVIQQSLQGCPGCETSRMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G517</accession>
    <name>A0A6S7G517_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA-binding SATB1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A080969</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000677">
        <property type="protein sequence ID" value="CAB3983932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G517"/>
    <dbReference type="OrthoDB" id="10052721at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006338">
        <property type="term" value="P:chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.70">
        <property type="entry name" value="SATB, CULT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032355">
        <property type="entry name" value="CUTL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039673">
        <property type="entry name" value="SATB1/SATB2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038216">
        <property type="entry name" value="SATB_CUTL_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15116:SF16">
        <property type="entry name" value="DEFECTIVE PROVENTRICULUS, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15116">
        <property type="entry name" value="DNA-BINDING PROTEIN SATB FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16557">
        <property type="entry name" value="CUTL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51983">
        <property type="entry name" value="CUTL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 2" id="KW-0371">Homeobox</keyword>
    <keyword evidence="1 2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="DNA-binding region" description="Homeobox" evidence="1">
        <location>
            <begin position="233"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="Homeobox" evidence="1">
        <location>
            <begin position="413"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="208"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="301"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="328"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3983932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="557" mass="62109" checksum="F9B5288C67D18960" modified="2020-12-02" version="1">MDEQNSGFILCDISFNGQLVADVKLPRACSMGNIVQGLWLDDNFRKTGLQYLKAKDEKAAQKTGGEKSTPLKSFGGIDRSILRAYVAIRIMPAWKWLEFKDFIVDFENKKDCYTVGDVLGTLCTGLHKPVLRIVPKSENEADDQEVKNIVNELLKTRSLATLAAAECPLSNGMLSLIAQGKYTSTISHDRCQAFVHWLRRQDLTNNGLRNSEQRVETPKPDVPVVSTPQPSKNFKPRITFSQNETDNLTEWFNEDERPSREVMQQYTEILNIPRQMASIRLLTQESIYFWFKNKRSKKRKEDSSLLEPWEMSESGGTPQVTMAIGDTPQATGDTPTSATTSQLAKSSTPQVAMATRENGGASIAMAITEESSDEVRMPINGLATMLARYTPQDRQPRKIPKSRITFDPQTELSSLNKWFNDNERPDKEIIEEYTNILNEARSQKSKRMLTSDSIAMWFKNKRAKRRRSEESFVGENSGQQQVVEANEGNKNEAGATAGMDTTTVTDGTTSITPATIEVTVSSVTASGAASDQMETDGEDHERNIFSAGLVAVKTATI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G884</accession>
    <name>A0A6S7G884_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Actin-interacting protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A029360</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the WD repeat AIP1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000427">
        <property type="protein sequence ID" value="CAB3981771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G884"/>
    <dbReference type="OrthoDB" id="2306at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030864">
        <property type="term" value="C:cortical actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030042">
        <property type="term" value="P:actin filament depolymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0040011">
        <property type="term" value="P:locomotion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030834">
        <property type="term" value="P:regulation of actin filament depolymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030833">
        <property type="term" value="P:regulation of actin filament polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000102">
        <property type="entry name" value="Actin-interacting protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000167">
        <property type="entry name" value="Actin-interacting protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19856:SF0">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19856">
        <property type="entry name" value="WD-REPEATCONTAINING PROTEIN WDR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00038366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00067845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3981771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="603" mass="66044" checksum="3908883DCCE9640E" modified="2020-12-02" version="1">MSYSLKHTFAALPRTQRGRRLCIKGDPKGKYMLYSHNKGVIIRDVENPMNADVYTEHAHEVFSACYAPSGFYICSGDAAGKVRIWDTTQKEHPLKAEYQPLGGAIRDIAWSPDSKRIAVGGDGRGLFAHAFLMDTGSGVGQMMGHAKLVNTIDYKSTRPFRVITASEDYSSGFYEGPPFKLKFTNKEHQNFVNVARFSPNGERYVTGSSNGKLLMYDGNTGELTGEIGSPAHKGGIYDVSWSADNKHLLTASGDKTAKIFDVDGNTCVQEFTFGSDICHQQLACLWMGDYLLTVELSGYINYLDTDNPSQPKKVLKGHNKNITCFTITEDKKHIYTASYDGQIYCWDVSTGLCESLAGKHHSNQVSKIAIHGSNLYSISMDDSFRVTSTETNEYSGESVAFDAQPINLAVGKDGLAVIICIDKTIVVTRNGKKVSSKKFEYQPSAASIHPNQTEIAVGSQTANELYVYSLDNDTISDLKHTVSDLAREISVLEYSPDGAFLGVGNAGKDVNAYVTTDYQELSLGWCGHSSRITSLCWTSDSQHLASGSLDTNVFIWSVESSKKVVIKGAHRLSSVVGVSWLTDNQLATTAADCSVKIWDIVHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9I9</accession>
    <name>A0A6S7G9I9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081608</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000469">
        <property type="protein sequence ID" value="CAB3982131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9I9"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180:SF2">
        <property type="entry name" value="BRO FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="35677" checksum="AC183996DBBB499B" modified="2020-12-02" version="1">MEKLFENKKLNVGVRTVRRGEEVLFYAKDVSESLGYNKPRNAVRIHVWEEDKCTLGSLQRGPSAGPLYMGQPETVLITEQGLYQLIFGSELKHAKNSRRWVFNEILPSIRKTGWYELPKSKLHYSKQLKLLNETDLHYAVVRYIRRYYPNALIVAGLGEYQDTVQRRCDAYRKGYIGGQPDLIIKNPMNGYIGFAMELKTPKGTDETKLNLSYLTSRMADKPEQTQVPVTSEKKKDPRRVAAGKRLAAISKIEKERKRKQAEPNESPSNDSVITYIGVAIALISLVLAYKSHEREEKALEPEYVPQTVTIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GE81</accession>
    <name>A0A6S7GE81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A070209</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001636">
        <property type="protein sequence ID" value="CAB3990288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GE81"/>
    <dbReference type="OrthoDB" id="8754475at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028021">
        <property type="entry name" value="Katanin_C-terminal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042404">
        <property type="entry name" value="KATNBL1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14682">
        <property type="entry name" value="KATNB1-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14682:SF1">
        <property type="entry name" value="KATNB1-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13925">
        <property type="entry name" value="Katanin_con80"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="77"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="90"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3990288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30773" checksum="CD8052CB89015711" modified="2020-12-02" version="1">MASDEHRKFYYDWHEGKYKLSDEKIHRLKEMDCKRHDHGYRIDKDNAGLYVENSHNMLPSVDVFLKKQNEDKVVKNSDVVDSGRGNQANKSKESQTRDGISKGHKVMTSVLSTRLLRLNAAQTLWHKDMNSFIEYILRLDDDAVIVDILPILTKRVKDDGPELSTLSMGACLDLLPVLGKLLDSKYEDYIIAAIDMVREVMKRWWKELQTIGKNEKKDIGKDFRCSRSVNGVYMLLISMTDRLRVLAKRSGKIGEKAKVLQELMALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GF89</accession>
    <name>A0A6S7GF89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071665</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001565">
        <property type="protein sequence ID" value="CAB3989893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GF89"/>
    <dbReference type="OrthoDB" id="5984733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28590" checksum="95035DC630A47872" modified="2020-12-02" version="1">MKDAVNNILEQFNNRFGKYPKFAQFDQGTEFYNKEVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDITDNYNSSVNRSIKTTPDSVNDSNWTEVWQTLFSHNLGKPSEPKFAVGESVRISKYKSVFTKGYEANFTEELFTVTEVYHGHSNTYAIKDSANEPIIGRFYEQELYSAEVREPDFRIENVLRRRTVKGKKMALIKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFW2</accession>
    <name>A0A6S7GFW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012572</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001297">
        <property type="protein sequence ID" value="CAB3988249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFW2"/>
    <dbReference type="OrthoDB" id="17366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12563" checksum="0528A20C2A597A18" modified="2020-12-02" version="1">MDDIACLKVVGILTVNFMFSVTVSNYLTDEIGLVKSPVTSLKIFCSTYVLGYFILFFTSAQNFASVLPSHTQSKGHFIITSILKWFIGALAFHCIAVLYGAALLRYLKQSLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GGG1</accession>
    <name>A0A6S7GGG1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">COR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A065586</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001344">
        <property type="protein sequence ID" value="CAB3988562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GGG1"/>
    <dbReference type="OrthoDB" id="6133115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="entry name" value="Leucine Aminopeptidase, subunit E, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032171">
        <property type="entry name" value="COR-A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11106">
        <property type="entry name" value="GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11106:SF27">
        <property type="entry name" value="MACRO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16095">
        <property type="entry name" value="COR-A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043826089" description="COR domain-containing protein" evidence="3">
        <location>
            <begin position="20"/>
            <end position="847"/>
        </location>
    </feature>
    <feature type="domain" description="COR" evidence="4">
        <location>
            <begin position="458"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="78"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="812"/>
            <end position="847"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="820"/>
            <end position="836"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="837"/>
            <end position="847"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3988562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="847" mass="96224" checksum="ACA7934588AA1B73" modified="2020-12-02" version="1">MIIFFVLQAFCCISTGIYSEYPRIKAAHVALKTVKTWLEENDDWVGRIIFCVFTQQNLDIYEKLMLQYFPCTTEKDVEETERSEDKPVGSKPKPTGSTVRPNDEKPVTTEPTIAPRSKSRGRGKDIEEEEYSRAYSQALQESKAKNNRIPIMLVGQDRGGKTSLMRRLLGLPFDKDQPSTAGIDVNVIELSEQNAEDPWKKREVKKFMTSESEAKTVLYKKTAEYIQRNLEGNAPEPLKPVIPVKPVMPVKPLSREEISKIKSQRSTEHDQNEVLRVFVSDFAGQSIYYDTHGCFVKPHCPYVLVHDLSLELDKSAVSKFKTSNEEEEIEMNNPHLNTNLDNFTSWLKFLQGLGECQDQQFPDKSGHFTTAKGENFKLPPVLIALTHSDEVKGNDSKIHCVQKKIKKVLSGGKYENVVPEFFLIDSTLEGDDGDDVRKLRRKLFDLSNGVLNQEILMPVKWLDFEAALSQKLSPDSKYIPVDEAKQEAEACGVGEFDHAIKFLHRQGVVVHHSGSSKVVLDPPWLMNRFTKVISMPGKLDALSRHALDVFKQKGIMFQEYLETLEDAELLKELMQKFNLICPCQHDGKAAFCVPSVAPAMIPGMELEASKMELNVPSLFVTFPRQLVPMSLFTKPQVKLISEWQKRFPNQQAGVSFYCNYSLLPLIIDGDVYDVCLIDLQEFIKVAVFPKQDGNHFKFASHLLATLKECLDDLKSPDQLLFSMTSYDLEVKCTRCFGKEERKCSRHHEIHCHSDRCGHRHFWKLSDLQRLYNDKSPAVCRSDKRSSKVFDIKSVKIWLNTVPDAAMVEDSSNYRRPNEISSEASSSGSHSTGDSYSKGSMNGMNQLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHA5</accession>
    <name>A0A6S7GHA5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Polyadenylate-binding protein</fullName>
            <shortName evidence="9">PABP</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A028635</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Binds the poly(A) tail of mRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the polyadenylate-binding protein type-1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001824">
        <property type="protein sequence ID" value="CAB3991308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHA5"/>
    <dbReference type="OrthoDB" id="19742at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12379">
        <property type="entry name" value="RRM2_I_PABPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12380">
        <property type="entry name" value="RRM3_I_PABPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12381">
        <property type="entry name" value="RRM4_I_PABPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000003">
        <property type="entry name" value="Polyadenylate-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000091">
        <property type="entry name" value="Polyadenylate-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000520">
        <property type="entry name" value="Polyadenylate-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1900.10">
        <property type="entry name" value="c-terminal domain of poly(a) binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036053">
        <property type="entry name" value="PABP-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006515">
        <property type="entry name" value="PABP_1234"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002004">
        <property type="entry name" value="PABP_HYD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045305">
        <property type="entry name" value="RRM2_I_PABPs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01628">
        <property type="entry name" value="PABP-1234"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24012">
        <property type="entry name" value="RNA BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00658">
        <property type="entry name" value="MLLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00517">
        <property type="entry name" value="PolyA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63570">
        <property type="entry name" value="PABC (PABP) domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51309">
        <property type="entry name" value="PABC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="7 9" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="366"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="559"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="621"/>
            <end position="641"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="430"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="560"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="623"/>
            <end position="634"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU362004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3991308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="641" mass="70459" checksum="F146E3D2DC62D3D2" modified="2020-12-02" version="1">MNFEPIKGRPCQIMCCQCDPSLQRSGVGNIFIKNLDKNIDNKALYDTFSVFGNILSCKIELDENKISKGFGYVHFETQEAADQAIEKVNGMLLNDKKVFVGNWMSKKERIEQLGDAPKKFTNVYVKNFGDDFSDEEMKKLFEPFGEIQSMRIMKTEDGKSRGFGFVNFAEPDSAGQAVDEINEKEMNGKILYCGRAQKKSERQAEIRRRLQQEKMERINQFQGVNLYIKNLEETIDDTRLRKEFESYGTITSAKVMRDDVGKSKGFGFVCFQSPEEATKAVTRKNGQIVMTKPLYVALAQGKEERQAQLAAQHMKRVAGRMIPQGTQPVGPMFTGGFYPAMATFPPGQHPALFPPQVVRTRFPTQPVRGQGAYPGPMMNRGPRMQRATRPVGHQQQSRVGSAGPGMPGMSGQRVNPVPGAGPRNQKYRPAMHQPGAAQQPPANAANSSASVAASAQDLLNPSVLAQASPPDQKQMLGERLFPLIQQTHPDLAGKITNVLLEIDNAELLHMLEFREALAAKVEEAASILQVHQAGPRMPGMSEQRVNPVPGVGPRSQTYRPAVNPAGAAQQPPANAANSSAGGAIPAQDLLNPSVPTQASLPDKKQMIGERLFPLQWRGQAGGLKEDVSDAHQAREQTPPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMB5</accession>
    <name>A0A6S7GMB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">SH3 and multiple ankyrin repeat domains 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A059487</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GAREM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002108">
        <property type="protein sequence ID" value="CAB3992713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMB5"/>
    <dbReference type="OrthoDB" id="5972889at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025946">
        <property type="entry name" value="CABIT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052281">
        <property type="entry name" value="GAREM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001660">
        <property type="entry name" value="SAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14454">
        <property type="entry name" value="GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14454:SF11">
        <property type="entry name" value="SERRANO, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12736">
        <property type="entry name" value="CABIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00536">
        <property type="entry name" value="SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00454">
        <property type="entry name" value="SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50105">
        <property type="entry name" value="SAM_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="312"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="397"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="511"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="411"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="424"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="526"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="550"/>
            <end position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3992713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="673" mass="74823" checksum="EC0D48FB08DDD0E2" modified="2020-12-02" version="1">MDNSSQDIKKLELNKLKWSTAYFTVSEFLRKFKLPQIAKVTAGFYGENDESTLGGDQVLCLHSVKSMEKLHGRDSSGNNISISLECRKKIEVRPPNLKDVYESVEELCSAFPSYVRISQGYYDASKDEEILNVGDKLQLKSIAKTKKGEKTLICVNQNGHTVELPKDCVAGFQPMADGKEYYLAEVLKKFSLPLYVRFVEPYTMDQRTRSKDKPLYQPPGTICLDRTSTRTVITATAMRNNGEQSMVQFSPDIDICLLVCEDAFRESADYVNICHSFNQDVDNQNIYTAISEYIDMTQNLREFSLNVASKSGSKNIKKGVPPLKKTSKPKPAKVIPPRPRLGSSKAKSNRAKAIPSKPVLPKDEIEQTYTDPNEIYEEIGFTEPTYTECRFLDNSTYTELDPPNIPTNSHEYAKPDVKHPAESNPITPAILSSKSTPTSGNKQPAKSNPPSHLGSQLSATSDSNQSVESGSNSILCNRRPPPVPDRLPSRRNRSVILTNPHLPNNAVALPIRALPDNPPQLPSRFKVPDRKTDVSTVHERKTAPTDSHESPTMVTNTNPALPTSLPGQPPSLPTNIMPVPTPEQKEEIYEAISKYPIDLSSLSITDVSALLNYLGMGKYVETFEAELIDGAMLASMDKESLESLNLIPFHVTKLIKFIGGWRPNSKIRSKTPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNW6</accession>
    <name>A0A6S7GNW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Organic cation transporter -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A084708</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001882">
        <property type="protein sequence ID" value="CAB3991589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNW6"/>
    <dbReference type="OrthoDB" id="6019834at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17317">
        <property type="entry name" value="MFS_SLC22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24064">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 22 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3991589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="527" mass="58698" checksum="12607C33DD0DF13E" modified="2020-12-02" version="1">MANNKVRSTQQPRASTAMGKTVDEILAQIGQMGRFQISRLAMFCFLMFPPTFHLLNMFFIGAEAPWQCAKNSTVCKLNGTFAAGDDDYNFRCNISRSEWEFADYEGPKDSIISEFDLVCDDAVYGWLAKSMVYIGKAIVTIPLGMISDRYGRLITLYPSILIIIVVGFASAFATKYWQFLVSRFFVGAVIYGVYLPMFILSGEFVGPQYRPLSQTVMWFAFTTVLLILALMAYLVRTWRTLMILCTAPWIFVLVFWKFTPESIRWYMTHDKIEKAEGELRDIARMNKKEYPEETLKIPATSTKNLSFLSLFSTSTLAIGALIQAFAWFINGMVYYGASYGASDLGGSMYLNYMLTSLIEIPANVLVVDNCERFGRKKTVIVHMILGGIACFVVSLIPGGTDRTDYIVGRVIGGMLGKGFITVSFNSIYVWSCEIFPTVVRNSGMAFVGVVSRIGAVSAPFVVELKRIHPTLAFGLMGGLSVIAALLCLVLPETRGMPTAEVYDNHNDPVDEIILNKTGEDEVEASTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H705</accession>
    <name>A0A6S7H705_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080582</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003397">
        <property type="protein sequence ID" value="CAB3998609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H705"/>
    <dbReference type="OrthoDB" id="5972337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="36787" checksum="B2917B8D83CABCC3" modified="2020-12-02" version="1">MIDLFGPYSVRGEVQKRTSGKAYGVIFTDLVMRAVHIEAVFGYNPESFLMALSRFVSVRGWPEIIYSDPGSQQIGAERELTETWKSIDRQSLHKSGTENGLTWIFGPADSPWYQGAVESLVKSAKRAIHFAINNQRLSVQEFMTVCSEATNLLNERPIGTLPGADSELNILTPNSLLLGRATAKNLGGWQPNGNYPGKRYHVVQIVTDEFWKKWTELYAPALVIRRKWNTANRNLRPGDVVIIADRNTLRGDYRLGIVQEVFPSQDGKVRRVNVMYKNFQIGEKVQKYKGHNEAVIVSRSAQRLSLLVPVDMDQDQETKSEAKESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7C2</accession>
    <name>A0A6S7H7C2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042847</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003429">
        <property type="protein sequence ID" value="CAB3998749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7C2"/>
    <dbReference type="OrthoDB" id="8960616at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26935" checksum="21481B17381A516E" modified="2020-12-02" version="1" fragment="single">VPHYEDKVVQSEDKVPHTENRVPHFEDKVLHSEDKVPHSEDKVPQSEDKVSENKVLHSEDQVLHSKDKVLHSEDKVPHTEDKVSHFEDKVPHTVDEVPRFDDNFRHAEDKVLQSEDKVPHTEDKVLHSEDKVLHSEDKLPDSEDKVPHSEDNLPRSEDKVLNSEDNVLHSEYKVPRLEDKVLHSEDQVPHFEDKDTRTEDKVADTEKKVPQSDDMVLHSEDKVLHSAEKGSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCW2</accession>
    <name>A0A6S7HCW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004471">
        <property type="protein sequence ID" value="CAB4002864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCW2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02178">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="95"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="151"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18744" checksum="9DB02CFA04FB160B" modified="2020-12-02" version="1">MSNISMEALIAIGEHFSGNIPSDDEEFEQKVKAFRENPYFERKEPEKDPIYSKRQQEKPALIEEAFERLKGTPGLPESTGGRWYTDNDLIKAEVEKIKQERNPKIPKKRGRPPKAKTEVEVKVPKKRGRPRKVKVDEEVKVPKKRGRPPKVKVEAKPEKANCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIJ2</accession>
    <name>A0A6S7HIJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AChain A, Crystal Structures Of The Luciferase And Green Fluorescent From Renilla Reniformis</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A041367</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the AB hydrolase superfamily. Epoxide hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002557">
        <property type="protein sequence ID" value="CAB3994877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIJ2"/>
    <dbReference type="OrthoDB" id="408373at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004301">
        <property type="term" value="F:epoxide hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002938">
        <property type="entry name" value="PRK03592.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43329">
        <property type="entry name" value="EPOXIDE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="3">
        <location>
            <begin position="57"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00038334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3994877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="36125" checksum="774A428892B9FAD7" modified="2020-12-02" version="1">MASTRLVTIARHLKPNGRHQLARRSLITGPQWFEQCKKINVLDSYMSYYDSENHPDNAIVFLHGNPTSSYLWRNIIPHADGVARCLAPDLIGMGQSGKSGNGSYRFVDHYKYLSAWFELVNLPDKIIVVCHDWGSGLGFHWCHQNSNRVKGIVHMESIASVIKSWNAWPEIARDIFQAIRTEAGEEMILKKNLFVDLLLPNSIMRDLTKEEQDAYNMPYREEGESRRPTLTWPREIPVEGEGPEDVLKIVNEYGGFLSTSNIPKLFIEAEPGFFSKAIKKVALQWPNTTTVKVDGLHFLQEDSPDAIGIAIQSFVEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJY7</accession>
    <name>A0A6S7HJY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081379</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005477">
        <property type="protein sequence ID" value="CAB4006325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJY7"/>
    <dbReference type="OrthoDB" id="5976842at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="25"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="296"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="301"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4006325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="35672" checksum="6E6D6FA8717F2049" modified="2020-12-02" version="1" fragment="single">MVKSCSPCQHHQNLNTKEPLVSHDVPPRPWHTLGSDIFHWNNADYLLVTDYYSKFPVIRKLPNLQSSTVVANLKAIFEEHGIPSKMISDNDTQYTSSTFQEFSRTYGFTHVTSSPMYPQSNGLSERAVQTVKRLLQKCKESNLDPHLAMLCLRSTPLSHDLPSPAELLNSRIYQTNLPAVSSPSCSASGDVNVKLQHRQDQKKILYGKPSKSLPTLPVRSHVRFFDPGSNVWQPGTIQGVASTPRSYVVETERGSFLRRNRKHLHPTGESFSGDSEIQLSDNIPFEVCATSKDLQADDARNQMSTSEDPTVQSSPIHAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HU49</accession>
    <name>A0A6S7HU49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001621</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006240">
        <property type="protein sequence ID" value="CAB4008826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HU49"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="25"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15167" checksum="AAD9E4F5C2052AC0" modified="2020-12-02" version="1">MVMEFYDLMVLIWGGAPSTEPLSFGAQSAGQAEESQEQGVDISDNKRKHMERQLSVAQRDKLLMQESKEEKEFRKDLSSSLKESNNIFAESMKAMNASMMAIASSMQRSFEHSAAPQYINHMAPPIFRAIFSPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HW13</accession>
    <name>A0A6S7HW13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Argonaute-2, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058756</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006244">
        <property type="protein sequence ID" value="CAB4008837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HW13"/>
    <dbReference type="OrthoDB" id="5971213at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003165">
        <property type="entry name" value="Piwi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02171">
        <property type="entry name" value="Piwi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50822">
        <property type="entry name" value="PIWI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="111"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="111"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15685" checksum="B0E74D2442307E83" modified="2020-12-02" version="1" fragment="single">KRHHARFFAVDQKDQKGKSRNIPAGTVVDTQICHPFEFNWYLCSHAGIQGTSKPALYHVLYDDSDFKSDDLQILTYQLCYTYVRCARSVSIVAPGAHHVAFRARHHLKMDSSTEGSTVSDDSGPKEITQEMRNLASVQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HY03</accession>
    <name>A0A6S7HY03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Laminin subunit gamma-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A071649</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Extracellular space</location>
            <location evidence="1">Extracellular matrix</location>
            <location evidence="1">Basement membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003623">
        <property type="protein sequence ID" value="CAB3999601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HY03"/>
    <dbReference type="OrthoDB" id="430826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005604">
        <property type="term" value="C:basement membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009887">
        <property type="term" value="P:animal organ morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009888">
        <property type="term" value="P:tissue development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00055">
        <property type="entry name" value="EGF_Lam"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000074">
        <property type="entry name" value="Laminin subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000051">
        <property type="entry name" value="Laminin subunit alpha 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000065">
        <property type="entry name" value="Laminin subunit beta 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000105">
        <property type="entry name" value="laminin subunit gamma-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050440">
        <property type="entry name" value="Laminin/Netrin_ECM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000034">
        <property type="entry name" value="Laminin_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002049">
        <property type="entry name" value="LE_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10574:SF435">
        <property type="entry name" value="LAMININ SUBUNIT GAMMA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10574">
        <property type="entry name" value="NETRIN/LAMININ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00053">
        <property type="entry name" value="EGF_laminin"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00052">
        <property type="entry name" value="Laminin_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00011">
        <property type="entry name" value="EGFLAMININ"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00180">
        <property type="entry name" value="EGF_Lam"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01248">
        <property type="entry name" value="EGF_LAM_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50027">
        <property type="entry name" value="EGF_LAM_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51115">
        <property type="entry name" value="LAMININ_IVA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0084">Basement membrane</keyword>
    <keyword evidence="7" id="KW-0130">Cell adhesion</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9 12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0272">Extracellular matrix</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11 12" id="KW-0424">Laminin EGF-like domain</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="12">
        <location>
            <begin position="157"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="12">
        <location>
            <begin position="329"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="12">
        <location>
            <begin position="357"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="12">
        <location>
            <begin position="359"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="12">
        <location>
            <begin position="378"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="12">
        <location>
            <begin position="405"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="12">
        <location>
            <begin position="425"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3999601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="461" mass="50570" checksum="EA6CB4AEE26D0F7C" modified="2020-12-02" version="1">MVASNQFVKTDFESFFFDFVRQDVHPQSKTRGQNLYQYRLHEDPSFDWEPQLNAFEFQRLLNHLDEIKIRMTYSDQGTGIIDDISLEYAMKDENSVDFVNWVEECTCPPPYVGLSCGACREGHKHETVNGSSYDRCVRCECNNHADSCDPNTGKCLCQDNTVGDDCSSCKKGYYGNPIAGNKDDCKPCPCVFGTQCILIGSKVKCTDCPEGHQGDLCDSCIDGFFGDPAGIRGPKTACKKCKCNGNIDTNAVQNCDSETGDCLKCIYNTRNGPNNQCELCKIGFYGDATTYPKPGCIPCDCHENGTFVSSSTPSNSPLPPCNQDGQCACRPNVIGLKCDQCIENHWNINSRLGCESCNCDQSGAYNDSCELHSGQCVCKPGVGGRRCDQCLPDHYQFSPDGCKACGCHADGSLGVSCDENGRCECRPGVLGVKCDQCGENRFNLSAGCTRKYDIINTMPLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZ65</accession>
    <name>A0A6S7HZ65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083469</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006451">
        <property type="protein sequence ID" value="CAB4009433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZ65"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8852" checksum="7CD6C520B724A4AD" modified="2020-12-02" version="1">MSDASHQKWTWALKAYKDWQTERNVSISKDPDSDQLLMDTSVGKMSDEKLDNILGRFVVKEETLTGKNTQERLFMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3F5</accession>
    <name>A0A6S7I3F5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018199</name>
        <name evidence="3" type="ORF">PACLA_8A026957</name>
        <name evidence="1" type="ORF">PACLA_8A030588</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007819">
        <property type="protein sequence ID" value="CAB4013263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020007819">
        <property type="protein sequence ID" value="CAB4013265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020007819">
        <property type="protein sequence ID" value="CAB4013267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3F5"/>
    <dbReference type="OrthoDB" id="10051057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="15003" checksum="540A3F1668F3306A" modified="2020-12-02" version="1">MFAEFVKEHFSSVFENSANPRGKLFLQDGDPRQCSKVARKAIDRLGCRMFAIPPRSPDINPIENIFHLVRKQLQDDALRNKITKESFAAFSERIKHTVKNIPVETINKTILSMNKRMKLIVKGKGNRTKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5C0</accession>
    <name>A0A6S7I5C0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ankyrin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A051717</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007296">
        <property type="protein sequence ID" value="CAB4011873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5C0"/>
    <dbReference type="OrthoDB" id="5948770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171:SF9">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13857">
        <property type="entry name" value="Ank_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4011873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="41493" checksum="9E78F818E60D1855" modified="2020-12-02" version="1">MASAGGGYGQSEDNPASPKTDLACLVVKDFTGQFNNDALELHISIQKSMKLDLKVNEKQDEIGFTALHWAVSSGNVEGAKILVKNGGNVHVKDILGFTPLFYCTGQAPSVEMTRFLVEECKANIQEKSNTCATCLHGAAVKGNTEIVKLLLKYGADPRAPDEEGTTPFDLARPHKDVLAILHKANSKVDSSRDKEGAPCANCGKCSGGLKRCARCRVTYYCSKECQREHWKKGNHKAVCEEGVLAEPGRFSGYQMTFMNVLQSQKPRVAFFGGETNEYCASQSPPKAKRFVVKVQRPIDSPMTNGDLPHKDLMVYNVDRSVDLFIKEETPGYDKILKKIVDEGMYGLKAYFWAERVSGEQNLVKVFPAKLAPVQEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBB5</accession>
    <name>A0A6S7IBB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012547</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004611">
        <property type="protein sequence ID" value="CAB4003362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBB5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="111"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="14071" checksum="97CB68C9AB052DAD" modified="2020-12-02" version="1">MPWKCKDCPICGKRALKRLANHLGDVHELSFQERQPYLIRAKPTALNLENVLTELYRLIGNNKKQSKWNKSRIKNIPILQPNSSRKRTKSSTKSAKNVDNTEMNDGSMDWLKLETKAKHNNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBG6</accession>
    <name>A0A6S7IBG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013220</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007884">
        <property type="protein sequence ID" value="CAB4013430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBG6"/>
    <dbReference type="OrthoDB" id="5968702at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004438">
        <property type="term" value="F:phosphatidylinositol-3-phosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046856">
        <property type="term" value="P:phosphatidylinositol dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030564">
        <property type="entry name" value="Myotubularin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010569">
        <property type="entry name" value="Myotubularin-like_Pase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10807">
        <property type="entry name" value="MYOTUBULARIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10807:SF128">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL-3,5-BISPHOSPHATE 3-PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06602">
        <property type="entry name" value="Myotub-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="(Phosphotyrosine protein) phosphatases II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51339">
        <property type="entry name" value="PPASE_MYOTUBULARIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="532"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="631"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="631" mass="72334" checksum="5E25C86DA8E00485" modified="2020-12-02" version="1" fragment="single">FCLPQKSDYNADKLTAIFSKYTKHLSPSKWFAIAYKEAIAHAGSADQFGSGNSQNFYHFEVEFRRLGLLQLNCWRVYSPNGPLETKAPKKTLIPHGINDMEMNSIIAFHGNRSFPSICWRNKPDGTVMLRSGSGVHRRGLFESRCEADENFLASVCFQNKQLNGNKLVVFTEQSRNNTAGLLTTPAHQLSGQITPKQGEAFCYPHVKFVYTDKEIIPDHKTVKQSSYKLQTLLAAECDDKTFLSYLAETQWLSQISELLETTSLIITAMSTDKSSVLISYEYGCDRTAQLSSLSQLLLDPHYRTIDGFQILIQKEWLSFGHMFAGRCISPKSNEGHGPIFLQWLDCVWQLLNQFPFSFEFNEELLQTIADHVYSCRFGTFLCDSEQQFEEEMIDSKTLSLWTWINLTIMAEPEKFVNNNYMKTKTERILFPRYHIPSLNVWESYYARTRLEEELLEAKHIAKEQRKLQEDIFALCQLGQGHHNSICQLLKPVGESYNHSAMGLTLFSINKVLKCCISANRYIHMHGVPSPLMQRAVDTGGGGPRRSRKPRPDRSTALRESLKLLPLTDIVLSKLPNLTPPYFTREIIHILHQKESLRKRIGTLEHVVHNRIFPKLSIRACKTQQSTNVCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IEG7</accession>
    <name>A0A6S7IEG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060954</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009489">
        <property type="protein sequence ID" value="CAB4017314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IEG7"/>
    <dbReference type="OrthoDB" id="5991326at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="73"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="639" mass="71886" checksum="44FE4770634ADD38" modified="2020-12-02" version="1">MAAHSDDPNDLESRLDYDESDDLDMPEQANKDPEHDRADFREFLSSLQKTMSTQTALLSILVAERQGEKRANTSSVTASASSSKRQKYDSNDIQPQVGLQDIAAETATTNASEEATNNASEEATNSVSESDNEQHTSEQNDDRLSVHGDEHDPDLAGSMSEDEDNTSLLTKIGESLCPTEDHGPQVIEKLSQLVNTKFVMDLDLEKRKQLSEKYKTPKNCEALYVPRVNPEIWGKLNPTTKQRDIKMSTLQDLLLRVSNAVIISLNTRLDCREKRSIPDYKSVMSNLIDCIALIGHVHKELSFKRRDQIRPSLTNEFKPACSRNNKIEKSLFGDDLSKVLQDLRATSKECHHAPIEFISPIFTVPKKDGGIRLILNLKKECIANVVQTVKVFDNVGLVHHPDKSTFIPVQEIVLLGFYYYQIHVQILVDNTTAVAVINHMGSVHSDSCHLMARKIWEFCFRNDIWLTAAHLPGATNVDADHASRNFISVDTEWMLNSTCLVEALETSISPRFIHFVQKDGTSYLSLIGEKLKAQGLSQSSIKITLASWRAGTHSQYQSQIIKWQEFCTQHKCDMISPPVTFAVDFLAQLSDSGCNNSIQDILSSAGWSNEKTFQRFYNKPTESSFNFGKVFWIQHVNSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGI1</accession>
    <name>A0A6S7IGI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022911</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009265">
        <property type="protein sequence ID" value="CAB4016806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGI1"/>
    <dbReference type="OrthoDB" id="6021508at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003582">
        <property type="entry name" value="ShKT_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00254">
        <property type="entry name" value="ShKT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51670">
        <property type="entry name" value="SHKT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="51794" checksum="8677E4D302ECC191" modified="2020-12-02" version="1">MLAVVVSVVLCQCLTHAGYLSSNVMRKDENVKPYNSADHYWSLTKIEKRKDKIVKDECGKRNARVSDGVTTKNDIELGRVVSLHTKRDYLIMTPLKSRCISDPFYCKQGITIELWLKFRRGEYILSSGGYTKRLVGPGFLLQYNSKIHRLQFLLSTRSRLWSIQFNAKKSTWVHLLFAWERTQGLVVYENGEFLTKDETGDNVRYPSFVNKYRTLAVGDPGIFIKLRSGGRFEIGHLVIWTRRLLPQEIKLKAFMAVVKQDSTSRQCCRKKSNDPCTADGCFYDEARCNNIGQKYPCICSAIKENKTCPNGVRFQRSCHDIANDCSTLARQPNYCDFYVKEMRASCAKSCNFCSPTVALSSNVEDEDSKIIIVAIAVGVTCVLMLLIMIAVVMARMNSKWQGEFVPGNNLSGSITADPNTQEMIAASVDPAARITDVPFKSPKVKKTTKVSRVEHAMTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IT04</accession>
    <name>A0A6S7IT04_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016622</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012002">
        <property type="protein sequence ID" value="CAB4022484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IT04"/>
    <dbReference type="OrthoDB" id="5987815at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21629" checksum="81503FE0F253EA5A" modified="2020-12-02" version="1">MEPTKRKLDSETVYDIDFSRKIYRKQKKKIPNCGFVCLLSDEKLDQKESTGTIISPIKEHPVSLTEIFNRAERVKQNLIVDEQERTNITNAMKKQSKSKEWYLHRHVRITASKCKQALLGIQDGHYIFACFLKQVSKQVERSSMLTEYGKFPSILLFMTLIFCHLLLSMTKQSEKIIDEVIKLVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVV1</accession>
    <name>A0A6S7IVV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphatidylinositol phosphatase PTPRQ-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A035134</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006537">
        <property type="protein sequence ID" value="CAB4009682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVV1"/>
    <dbReference type="OrthoDB" id="5985842at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.10:FF:000028">
        <property type="entry name" value="Neuronal cell adhesion molecule"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050713">
        <property type="entry name" value="RTP_Phos/Ushers"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957:SF3">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00584">
        <property type="entry name" value="TLDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="disulfide bond" evidence="2">
        <location>
            <begin position="614"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="2">
        <location>
            <begin position="653"/>
            <end position="662"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="890"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4009682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="890" mass="100026" checksum="DBF6D2CE4EEE89ED" modified="2020-12-02" version="1" fragment="single">RKTYTDFIFPSYLVPSEAPLGVQCNHNGSTSLRIEWSILPVVKAHGIVRTYVIFLERSDGRHVELYNDTQPYTSFTTIFLGLDENVEYSVQTLATTIKGEGPKSDPITCVTDEDVPHGTPQGLYGFNTSDTTIQIFWEEVPFDDQNGIITGYTILFNTTLRNGHINHRKKRVGRSVLQTELTNLLPFQYYDIQVAAWTSKGMGPKCDVVTILTEEEYPKIPPSDVTAFNTSSTSIRLTWRPIPPEQVGGILRGYKIFWQEVDYLGNVILRNETRLDSASYDFLDFTGLTKFQEYRFSILAFTKFDGVLSPNVSTMTDQDISTLSPTNCSGVNISKNAIRVSWDVVPRADRNGIILGYNIYTTEAFNYFATMPSDYIAPQKSTVINTTDEAARSFIQLDLVPYTDYSFQIDAFTSKGKGPNCTSFIVRTEEEAPLYSPGNVLLRNTSSTSIEVTWHGLDQDVIRGIFYGFKIWFTAYPEFPSSYLRYGTEAKRKRRAVFTLDKQVTTAGVTDETIEITALAKYTNYTIQVIGYTKFLGAQSEIVRIITDEDTKILAEDVCENNGTPLTGTHQKCDCPTGFKGFDCGEKVTVCEGNPCRNSAVFVDNDDGTFTCKCQLNYEGILCEKKVRPCDRQPCKNKGNCSDDGVKCFKCECPDGFKGFDCSRKFYHVKYPPAKMEVFVRTKKMEVSNVPVQLVLQVWCVLGKTLFASTVLEGNSEWIDQLQQWLPSQLQEKKMKLCYRASDNGWASSTFHQFCDNKGPTVVLVKVGKYVFGGYAAAAWGGSARYIKADTSFIFSFSNRDYLELFKSLVYQNNANAMYTNNGYGPTFGGGHDIYIANNANSGTSYTNFGHTYKPPSDYKYTTNAAKRLLAGSYNFTPSDVEVYYFANSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZL0</accession>
    <name>A0A6S7IZL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065556</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012192">
        <property type="protein sequence ID" value="CAB4022850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IZL0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19188" checksum="E961EC32D6C73281" modified="2020-12-02" version="1">MQSYGPIRENQRKIPESDATDYCGGTGRFESKEFDRGPPLVLPIFLGNLTQTKNLKGPEELPSHLNLLDCRYSLRSQLHSGMEFITMADSSIKENVYYKIKMSVKTRSAGLVGDSFAEFARNMDDYLKNSSVFKETIAGAVVVAVGEIVKPLHTEIASLKDEVTHLKAKLQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZZ9</accession>
    <name>A0A6S7IZZ9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001613</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020006918">
        <property type="protein sequence ID" value="CAB4010822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IZZ9"/>
    <dbReference type="OrthoDB" id="5975268at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="7"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="34955" checksum="AE36DE24036AD53A" modified="2020-12-02" version="1">MLGQVTFGWIDKHCKQATGSNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQRVQDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEHVVFLAKDARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPAFNESRPLCIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYIAISRVKSLASCVIEPMTYERLTSLKSSANLQYRLEEENRLDQLAQATSSAFRTANY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J047</accession>
    <name>A0A6S7J047_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020380</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012623">
        <property type="protein sequence ID" value="CAB4023678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J047"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="27522" checksum="0C48A78F5119136F" modified="2020-12-02" version="1" fragment="single">MAEKDEIENELLKEDDLSTSEDDPTIKNVLRSIDAHMATLANNMSNMSQEIRKIKQTPTATAKRDSRAVESAESLTLSSKKRRSNDQEGSDVDALIDDHPSEQETESAETKDGDEEDAFLTTLAMEYSADDKTSSPVSTQLADIVNKRWSSKLSDDKFKEKIAKYYRPENCERLFAPKVNPEIWSRISNMGQRQDLKLVAIQKILVAVGTALTQSAQLLMNARQTGGIRRHDGGENNTMNEVLTLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J125</accession>
    <name>A0A6S7J125_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070624</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005725">
        <property type="protein sequence ID" value="CAB4007198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J125"/>
    <dbReference type="OrthoDB" id="57679at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38696">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38696:SF1">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="491" mass="55534" checksum="887D5BCF0C2B6F43" modified="2020-12-02" version="1">MGNDTSLPLAQVPPGFSTMCISLHHTDSITVLHHDTGALSTIRQAIVDNWPDGIQREMAICGSGWMFKVKGTPFFTSSSSSSSQARQIIAVILQNLYSIGWKIVISCDLARFDADKSSMFLKRSPSNFSSVHPFVCVGLTRSDELQIINLPSQLIEPLKQVVYQFWTKGIQNESYENGVLEIKMAGKPLFATDLQSVMVKVLLQNIIATLHRFQYVYTVNVNLKSTADSLYFRYDPNVPVNGAAQFCTISLNRTDRLQVICAPEAIVNMIRGVIQTVWSHGKIQEEKDHHGSWEFRISGNPWHSWKEESVMARYLILKILEAMLEQGWHNIAAIDISRRATEKSVLIFQQREPRRCPIMCLGLTDAEKFLLINMPTQLVDLFKQILLSRWPKGIREESVMNLSFGSVRQFMLKGWPWNGGLSNDAYHIRSFLCNIIEAFAGQGWRVLIAGDVSAKYIDQDKGSDHTDVHSFWFIYEPNTTQQPTAPNGEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3X5</accession>
    <name>A0A6S7J3X5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Allene oxide synthase-lipoxygenase -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A063835</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 11">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the lipoxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013179">
        <property type="protein sequence ID" value="CAB4024694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3X5"/>
    <dbReference type="OrthoDB" id="407298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.245.10:FF:000001">
        <property type="entry name" value="Arachidonate 5-lipoxygenase a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020833">
        <property type="entry name" value="LipOase_Fe_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00087">
        <property type="entry name" value="LIPOXYGENASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00711">
        <property type="entry name" value="LIPOXYGENASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 11" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="8 11" id="KW-0408">Iron</keyword>
    <keyword evidence="9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="607"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4024694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="607" mass="69139" checksum="14A2930469AB6778" modified="2020-12-02" version="1" fragment="single">VTVISSSQDRLYSFPCFRWVIKDIVLFPGEATLPFNEVPAIVSEQRQKELERRKEAYQWDWVSDDMPGNIKATVHSDLPRDVQFTDEKSRSYQESRKAALVNLGIGSLFTMFEDWDNYDDYHILYRNWILGATPNMADRWNQDRWFGYRFLNAANPVVVVRCDALPENFPVTNGDVKASLDRGKTLEEEMKDGHIYLADFKILVGAKCYGGPILEDMGYKVPDNINHDEADIRYCAAPLALFYVNKLGHLMPIAIQINQEPSSENPIWTPHEPNEHDWMLAKFWLGVSESNFHQLCTHLLRTHLTTEPFALSTWRNLASPHPVFKLLQPHIYGVLAIDTIGRKELIGTGGIVDQSLSLGGGGHVKFMEECFKQVNLQDYNLPNALKKRGVDDPSKLPGYYYRDDGLALWEAIKAFVGDIIGIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPTSFVSREQLIEVLTSLIFTFSCQHAAVNFSQKDHFGFTPNAPAILRKPPPKKKGEATLKSIMSTLPNKGQASKAIATVYILTKFSEDERYLGNYSATAWEDNDALDAINRFQDKLEDISKKIKERNANLEVPYTYLLPECIPNGTAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J463</accession>
    <name>A0A6S7J463_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039058</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012694">
        <property type="protein sequence ID" value="CAB4023810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J463"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18546" checksum="FB3B57A6C083C37D" modified="2020-12-02" version="1" fragment="single">MATRRVMANSDIIPPLLDKSRKEIVNSSTIGIDFLGKDGNLIRDGCVKFCQTRDGVMKSSCKQVQALSKNSELQWDLIAQNILESEPTPISRPANQVDAASQIKEIDRLRSELSIEKARSEKLESRLSLFVKERSLEIEKLNLTIVSLENKNASTFAAPMNNNNNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J837</accession>
    <name>A0A6S7J837_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040728</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014355">
        <property type="protein sequence ID" value="CAB4026697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J837"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="26248" checksum="B37ED0D33A82CDDD" modified="2020-12-02" version="1" fragment="single">DKLKSEAFNDFFVNIGAKLAAEIEDNSLNTNSFARGDSRPTTDSNLFFKFFEINEDEVIYQLRSLKISKSTGLDNIPAKALKISADIVGPPLTWIFNLSIKKGEYVDEWKKAWVTPIYKSDDRLKCENYRPISILPIVSKILDRCVFNQIYKFLNDNSLLSKHQHGFRPKHSTLTTLTQVCDTLYENMDNGQLSGIVLLDIRKAFDSIDHNILLHKLKDQFGISDIELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEI3</accession>
    <name>A0A6S7JEI3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017004">
        <property type="protein sequence ID" value="CAB4030616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEI3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016706">
        <property type="term" value="F:2-oxoglutarate-dependent dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015095">
        <property type="entry name" value="AlkB_hom8_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09004">
        <property type="entry name" value="ALKBH8_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="23485" checksum="3B885EB8389A2947" modified="2020-12-02" version="1">MAINAKKTKDMWISFTDAIPEPPRLRIGNELIERVNAFKLLGVSFQNNLKWNAHVEEITRKANKRLYHLRKCRKSQLPAEVGIITYQSKIRPILEYASPVWAGLPNYLRDEIERVQSRSLRILGLEKDYLPPLNERREEATSPEVDRFMNDPNHPCRSVLPKLINNRYNLRNIDRNRNISFFSGTERHKHSFSGRACKYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JF71</accession>
    <name>A0A6S7JF71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077517</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017274">
        <property type="protein sequence ID" value="CAB4030985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JF71"/>
    <dbReference type="OrthoDB" id="6627680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15176" checksum="56EAA93BF3419D37" modified="2020-12-02" version="1" fragment="single">MITLNSLNFCTSEFSSKSSNLVQPSPQPQTLVIGATDYREQHVSSGVVQENAVAYVAGYLLKKCFNIHDCSTCKETLESANLDNSSKLFCYFKNYKEDNSSGGLHMPPQCFLDYILRLEDSFVKNFSVYTKSTTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFR0</accession>
    <name>A0A6S7JFR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001132</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008807">
        <property type="protein sequence ID" value="CAB4015691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFR0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15140" checksum="09332AD53E154962" modified="2020-12-02" version="1">MMNGKDRQWYSLKNALIEHVGCSSIRSGGQEHFKAKKYSMKEQNTQKRITDVNTNLVNTTIQVCKMKTARLSYEHLIGFLSACGGDIGHIAVHADGQYQSNTFQDALFTEMGKVKELDEFFLTSWDVCRIGWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JK76</accession>
    <name>A0A6S7JK76_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003473</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009397">
        <property type="protein sequence ID" value="CAB4017082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JK76"/>
    <dbReference type="OrthoDB" id="6151406at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013151">
        <property type="entry name" value="Immunoglobulin_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00047">
        <property type="entry name" value="ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34565" checksum="8567EA296D7B99F4" modified="2020-12-02" version="1">MSIIYYSIGQDRSRITITKQDTPFRMFFNGITFVFLITGLAILIQATEIRIPVRILREPSRTDVFKGDWIKLRCEIDTSTVNVSWHYKNFDALPPITNSSNGTSIITWSEDNKTISVFTLNVAERKNGVFLIYCRAKNEVNNEGYAYEPFEFQPDSKIPKISVTVPQTQTVMEGTHRHTLRCEVSSNVKIDKLYIIWLFGNQMIAEKLVTQADKGKHEYLLQCITGKDLGNYTCVANTTMYGKVWQHSGVMLLTGKFTENSGMKNNSGMKNNSGMKNHSGMKNLLSLNLYYIIFLLMIWKTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JS76</accession>
    <name>A0A6S7JS76_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020111">
        <property type="protein sequence ID" value="CAB4034437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JS76"/>
    <dbReference type="OrthoDB" id="3561817at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="585"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="585" mass="65982" checksum="64028DE140A6D5CD" modified="2020-12-02" version="1" fragment="single">MSQGGMGPVKRWDAQKSYPAIYGITKLMNVTFDSFRTGCNGKRDSAMMTNPVVGDITHPITMEGIIKSNMDNESMLFYTVPTTRSFADNLFPSYDKIIIAGDFNLPNISWTDDICSPTDLGMSSDHKIIQFKFFFASKTIQSNKRLVYDYRRANFDGLRKRLIDILHHIRKKVTARKRFLSRGTDYLKAKFNKLRAEVKKMIQNSRESFFSSLGNTIQINPKRFWSVFKIKSSSGNIPNSVTRSDTNNPGTRLHANTPHDIATMFNEYFHSVYTCFSDQPLPSQSGSSSPLSSISSIDLSLEEVYQALLNLDPWLMVPTEWKLANIIPLLKKGNKDHVENYRPISLLCIISKTLERCVLNHLSHRIQSNIHSAQYGFVNGRSSTAQLLSILNTIGKNLDQGLQTDVVFMDICKAFDSVDHSILLQKLHDFGFSGSLLLWFQNYLSGRFQRVTVHGATSTSLPITSGVPQGSLLGPFLFSVYINDLPNNISTSTGVGLFADDTKLYRCVQNPCDALVLQDDIQGLLCWSIENRLRFNQSKCKVLSITRKKSPLIYPYKLDNDQLLVSNAQVDLGITISPKLLRNDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVW2</accession>
    <name>A0A6S7JVW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017234</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022623">
        <property type="protein sequence ID" value="CAB4036996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVW2"/>
    <dbReference type="OrthoDB" id="413313at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004245">
        <property type="entry name" value="DUF229"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974">
        <property type="entry name" value="FI08016P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974:SF1">
        <property type="entry name" value="FI08016P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02995">
        <property type="entry name" value="DUF229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="305" mass="35325" checksum="20A25FA474F14D5D" modified="2020-12-02" version="1">MYADDTHLTYASNDIDDIDHHFNEDLAKVNPTVISANYRRTVRQGDFKFILGKSVPMPAMDTVKKITDEFIEVEYFLKNKTRVKEIFLQPVPHEHLLKKSAQKQPGIPLNILIIGVDSLSHSNTKRKLPKVYKYLKNELRSILFNGHSIVGDGTTEQLTAMLTGLGELEQHESRRHHKNPKPVDGWSWIYKQLKETGYLTGYSGDCPGLGPWQYRLMGFKNPPTDFYTRPFYAMAAQLIKNPNICLASRTISKVQFDYIREVFDMFKNKLKFFFSFNGKIRSLVYYFILINVSSVERQSNHGLKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0K0</accession>
    <name>A0A6S7K0K0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066413</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008652">
        <property type="protein sequence ID" value="CAB4015268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0K0"/>
    <dbReference type="OrthoDB" id="10025068at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14389:SF3">
        <property type="entry name" value="PROTEIN FAM111A-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14389">
        <property type="entry name" value="SI:CH1073-475A24.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13365">
        <property type="entry name" value="Trypsin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="27513" checksum="6D928DCE4AE0CAED" modified="2020-12-02" version="1">MLGITNYHVYMLINTEREKQQNPNLPITVSFDYLRSGQTEHVVTVEVDEEQDPQLGDSRLDYKVLRLKECESIQDRVPLGSIVRNRQLQEGLVIIVGHPEGNEMEEETCVVVSSYSWREKLKQRHNKCIERHINNPNPSLHMTNDQLLRSAEKYKDCLPYDTMLFTGASGSPVFNLNGDIVAMHTQGYTLNVEGGQCSLMEFGVHFKAIWEDMKSKERHHDVEQLFPNYNLEDMDIDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K562</accession>
    <name>A0A6S7K562_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025677">
        <property type="protein sequence ID" value="CAB4039637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K562"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="82" mass="9010" checksum="4766E6A12F7BEF64" modified="2020-12-02" version="1">MKSMKSMKIAVFLVLIIAQQSYCRTRCSGEYHTCASKSPIACDYASQKCYVNCFACRTGNRCCTGCELCSPGSDEMILLSKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6B0</accession>
    <name>A0A6S7K6B0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Lysosomal Pro-X carboxypeptidase</fullName>
            <ecNumber evidence="14">3.4.16.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="17">Proline carboxypeptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="16">Prolylcarboxypeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A088833</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Cleaves C-terminal amino acids linked to proline in peptides such as angiotensin II, III and des-Arg9-bradykinin. This cleavage occurs at acidic pH, but enzymatic activity is retained with some substrates at neutral pH.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>Cleavage of a -Pro-|-Xaa bond to release a C-terminal amino acid.</text>
            <dbReference type="EC" id="3.4.16.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Lysosome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.2" evidence="14"/>
    <dbReference type="EMBL" id="CACRXK020023958">
        <property type="protein sequence ID" value="CAB4038224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6B0"/>
    <dbReference type="OrthoDB" id="2130629at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005764">
        <property type="term" value="C:lysosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004185">
        <property type="term" value="F:serine-type carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.980:FF:000002">
        <property type="entry name" value="lysosomal Pro-X carboxypeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.980">
        <property type="entry name" value="Serine carboxypeptidase S28, SKS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008758">
        <property type="entry name" value="Peptidase_S28"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042269">
        <property type="entry name" value="Ser_carbopepase_S28_SKS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11010:SF38">
        <property type="entry name" value="LYSOSOMAL PRO-X CARBOXYPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11010">
        <property type="entry name" value="PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05577">
        <property type="entry name" value="Peptidase_S28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 18" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0458">Lysosome</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="8" id="KW-0865">Zymogen</keyword>
    <feature type="non-terminal residue" evidence="18">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="18">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00052013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00059701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00066456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00073691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00076475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00076608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB4038224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12642" checksum="44EBDF59891E3B2D" modified="2020-12-02" version="1" fragment="single">AIASSAPILQFQNITPCETFYKIVSDDFAREGETCFNLIKKSWNVIFDDGESSSGREKLTDIFHLCKPLKNQSDVYKFRDWLSSTWVNLAMVNYPYPASFLEPLPAWPIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFV1</accession>
    <name>A0A6S7KFV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078232</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027541">
        <property type="protein sequence ID" value="CAB4040960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFV1"/>
    <dbReference type="OrthoDB" id="5977763at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="70" mass="7443" checksum="C992C8A05540125A" modified="2020-12-02" version="1" fragment="single">KNVEWRAGATTLEDDSDQKFGSGKSFPTDPSLAVTLNLRLVARENEIPLPSTGNATPLANATLIPPPVQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJC8</accession>
    <name>A0A6S7KJC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A023060</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030542">
        <property type="protein sequence ID" value="CAB4042641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJC8"/>
    <dbReference type="OrthoDB" id="5961502at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF133">
        <property type="entry name" value="SI:CH211-262I1.5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12368" checksum="C259013CC6BC73DF" modified="2020-12-02" version="1">MEVRCQMPNSLHLNGKLFSNYKHHTTFKGLIGISPGGAVTFISQLYTGSISDREIVIRSGFLKLPFQNDDSVMADKGFKIEDVLPIGVLLNIPPFLGQSSQMSTKDNEPLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KKW4</accession>
    <name>A0A6S7KKW4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CTHRC1 C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015096">
        <property type="protein sequence ID" value="CAB4027892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KKW4"/>
    <dbReference type="OrthoDB" id="5984031at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057873">
        <property type="entry name" value="CTHRC1_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25815">
        <property type="entry name" value="CTHRC1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTHRC1 C-terminal" evidence="1">
        <location>
            <begin position="3"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12298" checksum="DA99BDDF0165D90D" modified="2020-12-02" version="1" fragment="single">AICKFTKAESHTSLRVTFNGNMRVTGCSGGCCRRWFLTINGQECKDPATIDTQIYATGTVNRHSPGTLDGFCNDIPKGQVTVGISLAACSGATPGNAYTGWYSVSRIVIEEMVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KV21</accession>
    <name>A0A6S7KV21_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085879</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017841">
        <property type="protein sequence ID" value="CAB4031713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KV21"/>
    <dbReference type="OrthoDB" id="6114255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="231"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="450" mass="51833" checksum="CEE7817DDA4D5418" modified="2020-12-02" version="1">MIIRVDKCSTFGIKKAITKSVQYLPKFIINNNLIPTVKIGEAFQYLGRYFDFNKSNDNHKTELTTLVNELMTDIDSKPLHPRNKLPVYSRYVLSKISWHFTIATLSKTWVIENIDPVVNQYIRKWLEIPISGTLSTVFLTRNKFGQSIYPPSVKFIQCQTVLRKALKLSPNQSINELGKFTNTHTNIQYDFYNSTKEVLKDFRSEHEDKLQNQLTCQGYFFSSVTKFSLSHLSKVWSTAQSKLPKNIYNFTIRYINNSLPTRKNLSRWGLSSSSECFFCLGPESLLHVVAGCQCYLDRFTWRHNSILNFLANTLQTLNGSALYADVPGFKSPSIITGDTCRPDLLLSLSNGSRYVVELTVGYETNLENNVNRKKAKYKELVKQLDENFNEVNFINLSMSSLGIFAQECSTFLEMLGNVGLDKNYQTYCVRKMMTIAIRSTYYIFCCRNKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LAN7</accession>
    <name>A0A6S7LAN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Latrophilin receptor A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A053170</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016264">
        <property type="protein sequence ID" value="CAB4029579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LAN7"/>
    <dbReference type="OrthoDB" id="5978087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4029579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="339" mass="38491" checksum="C4560A1D9A0C6B95" modified="2020-12-02" version="1" fragment="single">MRVNLPGIRGHMMISSCLNCSRELQENCSNPHSDIDAETMPVEGPDGHTYKNRFCALGNGIKPENIKRWGYELICNEVEAYNETEKIRATVDRCLVNESQNCHAQDKAFLHNNCSWYYAPYLNITKYHTVCSPVKTCLPTPSINMTALKYAELKLKCHAYMRVVYHNGSFYKNFHCAMCYGIGPTELQNPPVITYPSTISIFFEIPQNKPNRYKEVNIKYATNRTAGTVNHSSNSFETTEFELEMYFNLIGVSISMVTLLFLLALYSLVPELRTTPGKIIIGLSTSILMYQIVLLVSPQFTENAVACSITAIILHFAILSSFAWMSIMSFDVWKTFGRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LMQ8</accession>
    <name>A0A6S7LMQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024660">
        <property type="protein sequence ID" value="CAB4038842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LMQ8"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12226" checksum="DBA6560CD9A6656B" modified="2020-12-02" version="1">MASKGEALNGLNRTSRTEGRFVQSMVRNRLQMILNVGSTGIESWSHPLLLYINDLPNSLKMSKPSMFADDTNLTCVGQTSSEIETKLNEELENVHRWLTANKFTLIKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LN08</accession>
    <name>A0A6S7LN08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044606</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020815">
        <property type="protein sequence ID" value="CAB4035199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LN08"/>
    <dbReference type="OrthoDB" id="410104at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="75" mass="8825" checksum="637DDB6193DC2FD9" modified="2020-12-02" version="1" fragment="single">GGYQKQQDALTTCFTIEEVINQCLEENEKVYVAYMDISKAFDTMGINFMLFKLYHNKGICGEAWRLIRNWYIDMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS32</accession>
    <name>A0A6S7LS32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082948</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030436">
        <property type="protein sequence ID" value="CAB4042592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS32"/>
    <dbReference type="OrthoDB" id="10045385at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47326:SF1">
        <property type="entry name" value="HTH PSQ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47326">
        <property type="entry name" value="TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="25458" checksum="E6D8D15F13F61C5A" modified="2020-12-02" version="1" fragment="single">AAIKRTSDKFLTEGTCLDLNKGRSGRMRTGRTMENSDLVRQSLEENGQRSTNLLEDEWSWIKPMHVQIVKIDLKFHPYVLIRRQELKEGDPAQRLVFCNRFVDTNPGFHDQLIVSDEAVFSLNSEVNSRKVVKYAEYGAEQVMVWAGLTRAGAVLGLHFVEWNLDSREYLRIIRYHVIQRDFRETNNRRVMWWQQDGAPCHISNATMRYLRRQFPGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5H5</accession>
    <name>A0A7D9D5H5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Afadin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000041">
        <property type="protein sequence ID" value="CAB3977313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6260541at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005911">
        <property type="term" value="C:cell-cell junction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15471">
        <property type="entry name" value="Myo5p-like_CBD_afadin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028842">
        <property type="entry name" value="Afadin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037977">
        <property type="entry name" value="CBD_Afadin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002710">
        <property type="entry name" value="Dilute_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000159">
        <property type="entry name" value="RA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10398">
        <property type="entry name" value="AFADIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10398:SF2">
        <property type="entry name" value="AFADIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01843">
        <property type="entry name" value="DIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00595">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00788">
        <property type="entry name" value="RA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01132">
        <property type="entry name" value="DIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00314">
        <property type="entry name" value="RA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="PDZ domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51126">
        <property type="entry name" value="DILUTE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50200">
        <property type="entry name" value="RA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="334"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="951"/>
            <end position="1270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1309"/>
            <end position="1768"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="375"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="952"/>
            <end position="965"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="974"/>
            <end position="984"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1000"/>
            <end position="1027"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1070"/>
            <end position="1252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1260"/>
            <end position="1270"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1331"/>
            <end position="1351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1364"/>
            <end position="1374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1392"/>
            <end position="1408"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1495"/>
            <end position="1535"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1567"/>
            <end position="1583"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1654"/>
            <end position="1670"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1749"/>
            <end position="1760"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1798" mass="208276" checksum="E84F6C88917B4914" modified="2020-12-02" version="1">MVLATMADSSEREELEGLIEDWNASRLDMFTISKPDANLEFSGNMRFYFQEPGAKDTKVSTKVLRVSSSDTTDEVMKVLVSKFHPDMRMLTRPNYSLYEVHETGAEAHKLELDQRPLYVQLYWQREDRDGRFLLKSEEDQMTQKLFEDEESARNPDKRNSKVRQSKKGAKNKKKASQMEEKPKNLAAALYEDKPVSSFTRSKSNPEIVMKIQRKKKLEDKLKKLQDPETSGGGGGPLRIFAESLQPENPYKTILCASNDTTETVLKDALQKYEVPPEEMDQYCLTMVTIAPGNHSDPESSSGIKERVVPDHDCPAAIAASWPENSGELRFYLKKKENMPKRKQLQPRKKRDEPHARSSRPGPTVGDHSPPATKETTFDAKEHSPTEKEPSSPAVHIVDAARDLPATLEFRESGEDAFFAVVVSEVNGSAVNFKLAPTFTLYMCCRYRLSPKFRPDFPPNKRREKVTMTAQKVASMMWQTVKENNGMAGPLAFWMANSSEFLHFLKQDVELSGMTEESQRILAHTTQQAFRSLVQCIKAELQGCLPAFLDPSEESDLDEHGENGIDEKFDPMEGYQSTERSFKVRQYGPHGQPLGGDQWMGKRKKTSRPIVGDVLYTLKAAMSLLRRCRVNPALTIQLFSQVFHFINMWLFNRIVLEPQLRLCTRSWGARLRERLERLQAWAESQGLELAAECHLARISQAALLLQIPKQDSTAISSHCYKLNSLQLRQLLELYQPERDEPAISLELIEKAVSVAESTADEIARSEGQKVLLEEEPELHLPFLLPDDGYSSEKIRGVPPGLKEFLDPLITPGLCRLTIQPKASGLWTVHFKIPVGLESPPPEVIKISINKGNKGMGVSIVAAKGAGQERYGIYVKEVIDGGPAAQDGRLSPGDQIMDVNGESLVGIQQEDAVKILIKAGSVVNMTVAKKAVYNHGLVQLLSSVAPVQPVQKVDGQNRTAENKNLSPLPQKKETPRAPPRYRPPQDSPQRSPPLNTSVQSEVDQKLVKPEPKQVKPEPHRRRSPYDRSQYEAPEQPPVQTKTVVEYTLEEPPPGRKPPIGVKPLPYANPQEIQRRQQEMQQRKLEEQEKENFERERIAREQERMKKVKEDREEAERLERMKREEQARQERERMEREQQERQRVEREQQERLRIEREQQERQKIERERQERERIEREQQERQRIEQERQRREREEQERQRREREEADRKRREDWEREKSEREESERRRQEERKKQQQDRLEREQREKEEHAKRMQQENAGLDEMSRRERELEMMLEQKRREKENRLKELQRQIQEERAESERMEQELIERLRKEREERPQRMMKPSGGSTVHYVNDKGHQNEKNEMVRNEDMRSSRPVRAPTPANENRSDPPIDMRRPPLPNEDTRGNFGGLVNESRREEIRPNRPMDYNKRGPASADENRSTPPLARRPPMPSDDNRGNYSPGKRPTLQNSREDSFEMDPAEVERQFQHRLAQEASAGKSEVDGVRVIRVPVQQDNWESRGIDTEDRPRVRVDRQREEEDRNRKEQQWRREQDDQLVRDFQQNESLRQQPAGAVAEPVHPNQGDWEKDEELRRQREEDDRLREARANQLRNRIIERPEDDEELRDTSNGRTRRVKFASVRTEIIQPSPDAELTKQGHSVKFVHDGKVEDSDDDEFPSPPPPADDEPLPPPPQDQVDYYQRPPPPPKPQNLISNGGGNPPEYQVGANPPYTRDNEHIARARVQLSDDGYATYPGPRRQQHNNNYPVPKPRGSVSTDFSKSPSPDNAKLPFKDKMKVFNENTPPQRYTTSKWEQRWVNGDPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6H2</accession>
    <name>A0A7D9D6H2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000022">
        <property type="protein sequence ID" value="CAB3976965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6H2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="660" mass="74837" checksum="A1C77C1B15ADEF8D" modified="2020-12-02" version="1">MKGEAMYGDDPIVITDLKSELDYVKNLMERRAIAETTFTEGNDGTVNISGPSGSTTVPEVNFVEDPNNLLPDVLDAFNESFDADWDEIEARLEKLNKISTANKKRDFENQVERVQAVTRVIKEVLVFRSEQGIDKSGTQIMKRGKTRKPVYSKDSPALREYKDLLKKIKEVPTNPDNIIGSDKSIYEDTKEEPQFDSSDEEYADRENIELIDISAKLGDLPGLTMQENNELRGVLNPPDGSSIEGRTGPNGALQIQADYFNEAIGETVERATEAEGTTEYNSLLERIDSLKEARDMTLEQRTVEEAREAQLKDINRLRRFIDWVGKEKVGLVGIAVSTASLITAILIHARGAIVKTAKATGKVAKALANLAKKAGPILVPILNAIATALSWGAKGITCKLAMEEHQEEYDDRRMEELREKYPNYEEMDIETLDGELPYLDKDLRESETTEETQDINEEINYVQELRRRKILSEDLTREQLAEKFPDLSKLSNDDLMDRGDRLLNELILSNLDEDSFKEKSEELRYVRMLSNDYQRESNLNKLLNLRDKVKKRDLIKRDDRRRLQRLRLWVRENAGILSAVIISSLAIIIGLVATRNILWKVGDTTEKLDKRISELVNNQIELPPIFQKIADGVELAADNIWIIIVCAAAAAALLYKYQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBN1</accession>
    <name>A0A7D9DBN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052826</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000344">
        <property type="protein sequence ID" value="CAB3981009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBN1"/>
    <dbReference type="OrthoDB" id="7048166at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="105"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="165"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="117"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22592" checksum="098A4CD71B503CF2" modified="2020-12-02" version="1">MTQIKAENVQLKREVNELNAKVSKLEEEQENINSYSRRDCLEFHEIPQNSTENTDELVKRVANLIGVEINPYDISISHRLPSRRGSTPPIIAKFTKRRTKEIIYQSKRKLKSRNSSDIDEDETEERDENVQSGIISQRNDVVQVTDDDALIENTTTLSFAVTQPVSNADAEGNSANGSDLDSTAPAPRQIDALNLKTGIPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DDX5</accession>
    <name>A0A7D9DDX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031422</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000337">
        <property type="protein sequence ID" value="CAB3980935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DDX5"/>
    <dbReference type="OrthoDB" id="6537918at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="20344" checksum="F4E4A48FA71815DB" modified="2020-12-02" version="1">MPYESPEDERLTWLKDVFLNYLESWKQSTLTYEREYTPDARQKMFISFQTYEGLKIAVNSHVDAIKFLLTAGFKYVLAERFKQDILEDYFGHQREKGRRTDNPTTQQFGYNDLTIASQRDIAPVIRGNVGGGYEKVKWHQVSVEPVKKRRNLGRSGSNCQKRKRQNFYTILCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEP9</accession>
    <name>A0A7D9DEP9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050708</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000683">
        <property type="protein sequence ID" value="CAB3983989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DEP9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16356" checksum="1622CBE1E6C44A85" modified="2020-12-02" version="1">MDDVIAWMKSSISKRQKSLHKYGRNSQAYRFWRNKVQRDVKLARRKSYANSVQKLKSANPSRWWKEVKSIGGLSSRESWVHQLLSEVNPTCEDLAESYNGYLVGLTSHFKPLLECTDDQETEVPNYLLVNIGQVYSVLRTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DQL6</accession>
    <name>A0A7D9DQL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034827</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001830">
        <property type="protein sequence ID" value="CAB3991341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DQL6"/>
    <dbReference type="OrthoDB" id="6016580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="77" mass="8596" checksum="308F05F4FA1EF7B1" modified="2020-12-02" version="1" fragment="single">MFADDTSISYASDSAKELQNVINTELKGLSDWLTTNKLSLNIVKTEFMVVGSRQRIKTLNNEIDIEINGTMVNQVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DS79</accession>
    <name>A0A7D9DS79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064434</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002113">
        <property type="protein sequence ID" value="CAB3992734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DS79"/>
    <dbReference type="OrthoDB" id="5980149at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17954" checksum="DCD4013D061F6EBC" modified="2020-12-02" version="1">MPHELTTDSQNERQTVLEDNSFITNITERMPPKINFKTLLGKRDNAIHALKELFEEFETVFEIQPQLKRLEQIFTILETKYRSIKEQQEFIADKYVEGGVEETLKEAHKKIGDAVKEEYLKISKKFAAYQKEVSSKKPQEETETLKAMTSAVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DTY2</accession>
    <name>A0A7D9DTY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012034</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002186">
        <property type="protein sequence ID" value="CAB3993107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DTY2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17188" checksum="01527B801246ED0D" modified="2020-12-02" version="1">MALHEICTEECDQLIREAVQLWLDKKKTDKRKLPKRAPGFVSSHRKVFVSTGTQSDSEPMLRVDSLSVNADGSPKQIEVDLNEDPESDPDGDLAAKTVTDKAAYVDPAAGIDNAALNDTQILFLMNVSPDEYNDCIEDNDDLSANESGLSDEELEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EK15</accession>
    <name>A0A7D9EK15_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030908</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007495">
        <property type="protein sequence ID" value="CAB4012393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EK15"/>
    <dbReference type="OrthoDB" id="10048910at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="162"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="162"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="29526" checksum="65584683598579E3" modified="2020-12-02" version="1">MTEPLTLSPSTSSTPNDYQAAKMISGDSSDEPDTMLKFSTREHLTVPVSSSTSSAPTHHQAAEIIVISSGEDDEITIVPNAAPEPRTMKQEKGSDDEKDTRRQATVSKKSDDDLLPRAKQSKFGPQFWDDVKVESVDSTPNDINGRKVYEVKSSRSAKLSAVRDGRNWKKDSGTQGVEFRNDHTCPPKPVVQKPVREIKRQLTENPQLTPSTIQSNLIVSQMRQGKDWNSVEETARNIMDKKWLSNQKQKIKDSNQPHGHNFEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F050</accession>
    <name>A0A7D9F050_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010865">
        <property type="protein sequence ID" value="CAB4020259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F050"/>
    <dbReference type="OrthoDB" id="5989193at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="26000" checksum="4C44EC1F3F84F9DC" modified="2020-12-02" version="1">MTCQAPCTHSERERAIQGNLVHTELEKALEKSYHILQMHEVWHFPETSDEQFKDYVDTFLKIKQESSDYPKNCTTEEQKQQYVDEYLAVKGIHLDGENIKHNPGMCVVQTDAEFLIARLNKYGMCLEPNMKYPILDDIGQKFIDRAAELVKSGHTFVYVLDNIDWEEKAHDMRQDVQNRSVHAVATSTVFNCVSDEGLPDSGPQQDLKDCNVHQLMDINPLELDAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD94</accession>
    <name>A0A7D9HD94_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006031</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000320">
        <property type="protein sequence ID" value="CAB3980743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD94"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="62" mass="6932" checksum="507FBD51E15C7B51" modified="2020-12-02" version="1" fragment="single">MRLTYIKQCQHSVGLPAQLIMIRIPFTFFEFLFPNLQIVVGKVGGGDGRDGRDGRDGHKGDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD95</accession>
    <name>A0A7D9HD95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Schlafen family member 13-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000209">
        <property type="protein sequence ID" value="CAB3979570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD95"/>
    <dbReference type="OrthoDB" id="5954290at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.30">
        <property type="entry name" value="Schlafen, AAA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029684">
        <property type="entry name" value="Schlafen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007421">
        <property type="entry name" value="Schlafen_AlbA_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038461">
        <property type="entry name" value="Schlafen_AlbA_2_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12155:SF30">
        <property type="entry name" value="PROTEIN SLFN14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12155">
        <property type="entry name" value="SCHLAFEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04326">
        <property type="entry name" value="SLFN_AlbA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="520" mass="59106" checksum="846E8A18F203AA4E" modified="2020-12-02" version="1">MAGKKNIDLHVCATKMSDDLNKRYQNNTFNKIIHITNGLFNGDGGKLTLVFDTPLPPKGHIKESERKIEQKISDFTGVVTLAYDLSIKKKKGSMEIIVAESNTSCIFTLHYNLYVPTNQQVIEVPPNASFKKVRDILCRNIPPLEAVEPGSHFKEFTLGTAVDFGESKTVQFKHLLEKRTKNIGLAQRLIKNGKFMCYVSAFANHSAGHIYIGIDDNGIVQGEKITLRDQTDLKKEISKAIGNMIWPDNSNMQGGEEKRWQINFEAVKNTNGEIVPSTFVIVIYVAQCPGGVFTKQPESYQINEENEAVKIDFPTWKKIIVEGLERDKDDGKEINEASYEADVDEMLTELLNDNCEWSELKKAAENAQTTHDEVDVRLLCLSKLIKYCLRKGYYEKADEMFEEYKTILPESAKVEVFEVMEQYLLCLKERSNGNFETSYEIAEKCLNKLDKIQPGIISAAFFVLIAIVVNIIAMKKKNQSERNPFVSKAKQRNITIRLNVTYNTCTDSKLRKQTSDKRFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HDW8</accession>
    <name>A0A7D9HDW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">5-hydroxytryptamine receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A041817</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000256">
        <property type="protein sequence ID" value="CAB3980090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HDW8"/>
    <dbReference type="OrthoDB" id="5859976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030425">
        <property type="term" value="C:dendrite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045202">
        <property type="term" value="C:synapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004993">
        <property type="term" value="F:G protein-coupled serotonin receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030594">
        <property type="term" value="F:neurotransmitter receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007268">
        <property type="term" value="P:chemical synaptic transmission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007187">
        <property type="term" value="P:G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14967">
        <property type="entry name" value="7tmA_amine_R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24247">
        <property type="entry name" value="5-HYDROXYTRYPTAMINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24247:SF202">
        <property type="entry name" value="5-HYDROXYTRYPTAMINE RECEPTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="34"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="72"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="151"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="194"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="260"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="298"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="353"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="353"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3980090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="394" mass="45077" checksum="DFCE0F2376C0C890" modified="2020-12-02" version="1">MNDSTIVSSTWSTSIPIMTKNMSLQQHQFEITPIFTATTVILFFMVIGIVLGNVLVLATTWLDKRLHQPNKYFIACLAVADLLVGVFSVPIRLYMQFDPLQLYPIKLCRFWFWMDIFCEVASIVTLTVISVDRYFKISKPFKYRVRMDTTASAIVIVNIWLISAVCATFSLFSFGGSDAVTSVVARGCLNDNKIYYTILSVVFFFAPSVIVILMYAFIFYIAHQRQKMNRRGELGQSSAVSKTDKKGKEFRQELKTIRMLSLVVCTFIFCWGPSFILLLIQLYKIEYIVLLPLKDWQIIGSLFIVILPSFNSLCNPLIYACFDRKYNNAFKHLLKKYILCAFLSRQNTRTSTSSTTRRTYLSKESGHSTGNSSSSRLMFELQDNPRASDGQCEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HML7</accession>
    <name>A0A7D9HML7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001304">
        <property type="protein sequence ID" value="CAB3988302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HML7"/>
    <dbReference type="OrthoDB" id="5977152at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="581"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="74"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="598"/>
            <end position="612"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1079" mass="122194" checksum="5699F698B20BA020" modified="2020-12-02" version="1">MKELTSAQDALDNTLESAVERMTLFTKFENTSHETNAILKEVNEVIYELKMVNDDRSSVTSSRRSKKSSRSKSSRSTTASTTSTAQQRRLNLEEELATLKAKMHMAGGKEELDEANRKALENLDELRLQLQKEETRVKEEIQNATKRFQIAEELAEKKARIEEEFAPLPLADSDEASCAQERLARFLGLQPDMPNADNYVRENTTAAESTPPKDPKLMPELCPLNPSTPEFVPNAVPSIPTNQQDTIPPVIEKIVTNPVPNEPSLFHAQLDVISKLLEVQNQNRLPLPEPGIFNGDPLQFPIWLKAFETLIEGRAINPAERLHFLGKYVTGEAKELIKGFMLLDGEDAYRKAKEMLLKRFGDSFAVAAAFRQKLDTWPQIFPNDVQGLRNYADFLVQCEKAMEKISCLKVLDDDQENHKLASKLPRWTLVRWGRRVYDWEEKNHNFPLFSEFVKYLVTESNIACDPVISRFRKTTLRKRRVNRTKYRIAGIVRIEMNFAVETLATRSEEGDQGKERPNGEAKQTTCILCNGPHELNSCQSFCAKDIIDRKEYAKEKGLCFGCLTQGHISKHCKKRKTCTTCKKSHPTSLHGDLRKPENNQNSQSPENPATTNCTKTCFMIDGNEHQISSMIIPVWISHEHNPELEKLTYALLDDQSDTTFVSQETLNHLNVSGPKTQLSLSTMHAENELLPSQRIKGLKISDVMHSKVIQLPTSFSCIAIPARRQQIPCPEMAKKWPHLRDIASHLIHPQNNIKVGLLIGSNCPQAIMLREVIPGQQNEPYAQRSDLGWGIIGNVTKPTENNDESSVAIVHRVTTRNPTSTNTPQQKTCYFAIKPTVKEVINPAQLCQMLELDFSERRNSEPSMSQDDRKFLSKMDQVYDPLGLVSPVVLIAKQILQELCRDGADWDDPIPDSIKKPDSGQDDVRRRKAVMKKTSSLYRLDPFLDKEGVLRVGGCLTRANTPYHVKHPTILPRKGHITALVIRAYHQQVNHQGRGMMLNELRASGYWITGGSSAVAHHISEFVRKVKLVMSDPSLNRKGERVRAKSVLERPIQKLLLLLKCDGDQNENEDKRFPNGEPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7Y8</accession>
    <name>A0A7D9I7Y8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-galactose dehydrogenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003673">
        <property type="protein sequence ID" value="CAB3999802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7Y8"/>
    <dbReference type="OrthoDB" id="48988at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010349">
        <property type="term" value="F:L-galactose dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19163">
        <property type="entry name" value="AKR_galDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.100:FF:000011">
        <property type="entry name" value="Aldo/keto reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044479">
        <property type="entry name" value="LGALDH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42686">
        <property type="entry name" value="GH17980P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42686:SF1">
        <property type="entry name" value="GH17980P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="329" mass="36907" checksum="3740DE40E04E458D" modified="2020-12-02" version="1">MKYRLLGKTGLEVSILSFGASSLGSVFRSTKESESIEVVHEALKSGINYIDVAPWYGHGKAETVLGKALQGVPRDSYYIATKVGRYLPEVDKMFDFSKEKIVAGFEESLERLGLDYVDVLQIHDMEFAPSLDIILNETLPAMMKLKESGKVKFIGVTGYPLENFRRVLEKTTVPVDTILSYCHCSMNDRTLLDYIDEFKKYDVGIINASPISMGLLSNRGPPPWHPASQGIRSACKQAAEYCQSQDIDISKLAMKFSLGVEEVATTLVSTASLSNLRKNIEAVTEGLTDVEKQAMDYIIENYFRQLEDKTWEGVEVNEYWNKLKQLKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IA10</accession>
    <name>A0A7D9IA10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A085732</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Microtubule organizing center</location>
            <location evidence="1">Centrosome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ODF2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005162">
        <property type="protein sequence ID" value="CAB4005321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IA10"/>
    <dbReference type="OrthoDB" id="413404at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005813">
        <property type="term" value="C:centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902017">
        <property type="term" value="P:regulation of cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026099">
        <property type="entry name" value="Odf2-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23162:SF10">
        <property type="entry name" value="FI13205P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23162">
        <property type="entry name" value="OUTER DENSE FIBER OF SPERM TAILS 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4005321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="388" mass="45910" checksum="33376F77711B52BA" modified="2020-12-02" version="1" fragment="single">LQKDRAADIEKNVDSLKQRLDQELAEAKLNEDVWKDKEIKFKKEKTSYEARINKLKSRVEELEQIIEHTDNTAKTNKEALNTKLQTRIQEINSLRAENERLKIEVEGFEERLKAEEERHFAKIDKYRRDVEEARMNAQEKEDLLERVKQEGHLETEKVRIALQQRIAELEPVSELFKGSERRLQDSQDRMLDYERRASDHKQLISELTQKVEMQSDQLEEIREKWRAAQEYNKENDKRFDSLERKYEQLCNENRDLIASVSRSEEALKQTQEKLDEKKDIVAKLSFQLEAALADARRQAESQREKNIAKERSSQARIADLEAHLSRATANVAQMKREKDEVERRFTSRLSDMRDRLDQANTTTRGMQNYVSFLKSSYSTVFDDIDDGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBD1</accession>
    <name>A0A7D9IBD1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease P subunit p14</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A026330</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005222">
        <property type="protein sequence ID" value="CAB4005509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBD1"/>
    <dbReference type="OrthoDB" id="2262258at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030681">
        <property type="term" value="C:multimeric ribonuclease P complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033204">
        <property type="term" value="F:ribonuclease P RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001682">
        <property type="term" value="P:tRNA 5'-leader removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3250">
        <property type="entry name" value="Ribonuclease P, Pop5 subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049128">
        <property type="entry name" value="Pop8-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038085">
        <property type="entry name" value="Rnp2-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15441">
        <property type="entry name" value="RIBONUCLEASE P PROTEIN SUBUNIT P14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15441:SF1">
        <property type="entry name" value="RIBONUCLEASE P PROTEIN SUBUNIT P14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20976">
        <property type="entry name" value="Pop8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160350">
        <property type="entry name" value="Rnp2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Ribonucleases P/MRP subunit Pop8-like" evidence="2">
        <location>
            <begin position="13"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4005509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15247" checksum="2EE129F9BFA587B2" modified="2020-12-02" version="1">MSSRVTAKQKSEYYYLKCVLEQEENGTIKYIVLERVKLKSLIVNALKQLHGLVGAAITVDVLKCEKTSGEIILRVKSSDLIKLRSSLTILNNYNGTPCRCNVKQVSPYLMSLAADSRAWSPVEVRGKQSRYYEQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBT0</accession>
    <name>A0A7D9IBT0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059663</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005539">
        <property type="protein sequence ID" value="CAB4006557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBT0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00117">
        <property type="entry name" value="TFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045860">
        <property type="entry name" value="Snake_toxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10036">
        <property type="entry name" value="CD59 GLYCOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57302">
        <property type="entry name" value="Snake toxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4006557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16000" checksum="21474550F73DED59" modified="2020-12-02" version="1">MFSKILLVLGVVLVISALGSALECNVCDYWTSQPKEQQKCTSRTVTCSFGFDYCYTLSGTYQNGTDVVERSCSGNSVACHNTEATCFILAIKYGLKSCAFECCNTDNCNNYTPSRETGINYTPSSATGVMMTKFTLSMMVIVGLIFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IG81</accession>
    <name>A0A7D9IG81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040376</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006538">
        <property type="protein sequence ID" value="CAB4009687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IG81"/>
    <dbReference type="OrthoDB" id="5965925at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="18845" checksum="92B9E0CDEC2C5D52" modified="2020-12-02" version="1">MKNSARAIVKLMQLEYFPREILALSTEKGVKSGSRLVNLCPVLKNGVLCVGGRLRHAPLTSEAINPMIVPNEHHIAAFIISYFHHVLGHAGREHVLSAVRQRYWILNARALTRQILRQCITCRNNNESPMTQKMGDLPGARLTPYEPPFTFTGLDIFGPFTVKRGRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGP1</accession>
    <name>A0A7D9IGP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005514">
        <property type="protein sequence ID" value="CAB4006460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IGP1"/>
    <dbReference type="OrthoDB" id="5952771at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="23671" checksum="7054F25DA3F9D498" modified="2020-12-02" version="1">MPLNYAVSITPLLQMINVAHEVRHIAFADELSGAGRLVQLRSRWDNIVSHGPLLGYYPRADKSWLIVKPDLLVAAEEIFAGADVRISTDGHKYLGGYFGSEQGKNEYIRSLLERWSNQLRVLSDMRSMSLKQPTLPSCPDSVTDLPTISARFQIFNINCSRLTTSSTLNCFLQSRPAEIFPCKIVSYLRCQHFWESWHTHSLGYVCHGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IH11</accession>
    <name>A0A7D9IH11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044646</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005239">
        <property type="protein sequence ID" value="CAB4005575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IH11"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22902" checksum="4CC0F59A4DF326A8" modified="2020-12-02" version="1">MGSESEEEIFEVVREVEEAAKTPQKKARKTKPTADKSQTEHKRNKLIELSKDGVIDKTASFIRKSNKDVVDRLYSEYESQRMSCASDFLSTLIISKFASILGSFNAVESSEKLSEELLSDKLLKDDVCYLTRMISPNTPFIGLISGGCTTAKHVVLTSGIRRKRLRKYLRKQNKSYYIVKKNVRPRVGERLGRNRVRRHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPF2</accession>
    <name>A0A7D9IPF2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine- kinase SPK-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057168</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006828">
        <property type="protein sequence ID" value="CAB4010559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPF2"/>
    <dbReference type="OrthoDB" id="5985221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006914">
        <property type="term" value="P:autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010506">
        <property type="term" value="P:regulation of autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045269">
        <property type="entry name" value="Atg1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24348">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="25858" checksum="02B917E7AE3052DA" modified="2020-12-02" version="1">MLKDTETTEFLGLCTEPYAIMMQYSCFNFAIFGADSSVSSLADFLQFVDTEYNFLSFSEVLPVCVKDIVTGLDYLHSHNVAHRDLKPGNILVCNQHLPNSSDDTVLGKAYQACPIVCRLSDFGLSRSVDVQTKSVLTSKTTSISCGMPVYMAPEIHLNQLVMAGQEDLRRADMWSLGLVMHAMLNPDLCSPYRTELMQTASVDPQVELRNIMAKRQLPQHSSKYEQLRIST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRE3</accession>
    <name>A0A7D9IRE3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PEHE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A009407</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007180">
        <property type="protein sequence ID" value="CAB4011530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRE3"/>
    <dbReference type="OrthoDB" id="6022555at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072487">
        <property type="term" value="C:MSL complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026711">
        <property type="entry name" value="Msl-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029332">
        <property type="entry name" value="PEHE_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21656:SF2">
        <property type="entry name" value="MALE-SPECIFIC LETHAL 1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21656">
        <property type="entry name" value="MALE-SPECIFIC LETHAL-1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15275">
        <property type="entry name" value="PEHE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01300">
        <property type="entry name" value="PEHE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52052">
        <property type="entry name" value="PEHE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PEHE" evidence="2">
        <location>
            <begin position="107"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="125"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS52052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4011530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="40767" checksum="6962315120151EA7" modified="2020-12-02" version="1">MERRMSIKTHNTHYDEDEFDILPTSPRDRKMLQKRMNRKPSISELMRRKSIPAAAAVLMSSAIERFVNIDTCLRTETLYMDNENSMVAEIPEQIIQENTDQPVCSADVPIPQFRIVENYSTPLQTCGTTTRSSVSSTEDIDTTCENMDDETFGKRHSRPEADEKRRKRWDIQHYRAKKQREELQEKYKQREEARLIGRKVVEPEQLSCDETLLPDCFHIQTVEISDTVPVTAFGAPVQSFQHREFELPWFSVDKREQHERGKLIRSKARNRRKSGRRFCKFCQIIIILGLHLTSCQPCWRNAHKRISSAAFGACSQHDRLVFVSSQGIDCKPPIATSLCLSAPSRGHDLNRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWZ2</accession>
    <name>A0A7D9IWZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009874">
        <property type="protein sequence ID" value="CAB4018136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWZ2"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15767" checksum="7979C16312D655B6" modified="2020-12-02" version="1">MTSDQVQFRNLLVRLRKCDSIADDWKLLLTHQPSNVTNLCDFEDSTRFFYSNEQVGNYNHKQLTKLEHPVAHINARHSLALAKKISPDDMSGLEPVVFLSKGARVICMLTINLWSSVGICNGATGTVVDIIYQNNLTSMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IY25</accession>
    <name>A0A7D9IY25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A042918</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the dynein light chain Tctex-type family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010579">
        <property type="protein sequence ID" value="CAB4019681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IY25"/>
    <dbReference type="OrthoDB" id="10260741at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005868">
        <property type="term" value="C:cytoplasmic dynein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045505">
        <property type="term" value="F:dynein intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd21451">
        <property type="entry name" value="DLC-like_TCTEX1D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.40">
        <property type="entry name" value="Tctex-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005334">
        <property type="entry name" value="Tctex-1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038586">
        <property type="entry name" value="Tctex-1-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21255">
        <property type="entry name" value="T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21255:SF65">
        <property type="entry name" value="TCTEX1 DOMAIN-CONTAINING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03645">
        <property type="entry name" value="Tctex-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="21793" checksum="9B74D69C2C3946B6" modified="2020-12-02" version="1">MSRSLALDSRRSSISDGSSHLQDRNVSIATSGDTHATRRPSISSTTGLPNLNKRRSTVYRKSSVLDSHPASLAFRPRLANTYQMEPERKFKPAEIQKLVYNVLEERLEDTSYEPDKCRHLVVSLANEIRHRVKQMGFARYKIVCTVDMGSIEEQGLRVASRCLWDKVQDSLGTATFKNESLFAVGTVFGVYHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8S2</accession>
    <name>A0A7D9J8S2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063098</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012935">
        <property type="protein sequence ID" value="CAB4024281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8S2"/>
    <dbReference type="OrthoDB" id="9050231at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018159">
        <property type="entry name" value="Spectrin/alpha-actinin"/>
    </dbReference>
    <dbReference type="SMART" id="SM00150">
        <property type="entry name" value="SPEC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46966">
        <property type="entry name" value="Spectrin repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="378"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="730"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="390"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="743"/>
            <end position="759"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="778"/>
            <end position="790"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="790" mass="89600" checksum="5EDCFA548CCCE2E9" modified="2020-12-02" version="1">MLMGMGKVIITITAKPGEELMKQPDLPITRDLQALNDRYDNIWRDIEKRGIDLETTLNNADKYFTALNEATTFLDECEKTLAHQPAIANDLPSIQKQLVSTENLLSKLENFTPVKDACSSGEELIRDREEAPGCKDVKKQISLLKERQDSVLERARARRDRLLGAADRPISEFRNEVRDISAWIQESWNVMSAILRGEGTVVGNQRKIEQIDIENERMKPMMKEIRKNGENLIKYMNSRNQNPQPVVTMMTKLTKAWDEFQEKLLLTKETVNEGKTLPQEPEFLEKAVAIEAFSEFPEEDIDTEPMDTSEHVEEYTDEQGRKVKRITKKTYSSVAPENGAEPEEHVEEFIDEQGRKVRRVTKRVVRRIQERSSHDAPVTFLPCASDMSSHRSRKRSHSREKSHHASTNKSSKRPKSKANDDLDENDHILRQILQSVTDLKADMSVCNSRITALEAHSSETASQGSHFRVDAEHEDDALSVSAGNDIDCFDASQLENMATKPPNLAIRPPDLTIKSPEMTQESPDMDILTKETDPQLVGPTNEHLNSHLYDPDDLAIAWSPSETFTSFLEKNFRRKLTYDQVCEILETQSVPSVEALVAPTLDPSVVQHIAQNNKKFVQERDKELQLVQRALLNATGPLCTLHDQLENNAPVDLVNLKTTVEQTLCLLGSANTQLSILRRKKVLASINKGKLDLANQPLPNAKKWLFGDDFPSIASKEAELSRGLAKNLAPAFTRPKPQGPRFPSSNQSGYNQSKYQNFQFPRHKQKFFRNPRLPYRPQHNSQGTSNSGRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JIX4</accession>
    <name>A0A7D9JIX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016709">
        <property type="protein sequence ID" value="CAB4030200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JIX4"/>
    <dbReference type="OrthoDB" id="5965777at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="304"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="309"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="322"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="347" mass="39339" checksum="FF6C91CA36FC02F4" modified="2020-12-02" version="1">MVLVKRVHEITDHSVFGDRGLLKCEPVKIHLHDNPKPYSVSTPRRIPFPLLPLVEAELKRMKDEGIIEEVTEPTEWCAPIVPVPKKNGQVRICVDLKKLNEAVKRERYVLPSLDDIAPSLHGSEVPHYPQANGKAESAVKIAKRILKQTDPFLALMVYRATPIPATGVSPSQLIMGRQIRTTIPTLSRNLLPAWPDLPTVREVDKESKERYSHAYNKRHGVKSLSDLEPGQTVRVKTDNQKKWSPVGVVSAYGSTPRSYIVDTPEGKKMRRNRRHLQAVPKAVSDDILEDDIFQAIPEVVPEINPETSELSRRVADRRNPERTLQNTPSHTSSGRVIRKPKRYIEEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JJV9</accession>
    <name>A0A7D9JJV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025798</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017488">
        <property type="protein sequence ID" value="CAB4031271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JJV9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="70" mass="7910" checksum="516D0B4DBA11DCE3" modified="2020-12-02" version="1" fragment="single">DAPDWAFRPVSILPSLSYLFNKIISGDTPDWGAFRPISILPSPELSLQKKLYQEISQTAEHSEQSRYSSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JT80</accession>
    <name>A0A7D9JT80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034349</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002763">
        <property type="protein sequence ID" value="CAB3995929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JT80"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13310" checksum="3E9AC05C21A0BD76" modified="2020-12-02" version="1">MSLDFNHISKDLDKEVKKELVYLYNYYDLRFRGYRKWHKKFKKRKLYLHMTSIGFTTADGIVGGVMVNPIVIGTLAGVGVVIQGYIAKTELNKKVERTRIAWSNYRGVYTQIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JTA3</accession>
    <name>A0A7D9JTA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050421</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021543">
        <property type="protein sequence ID" value="CAB4035951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JTA3"/>
    <dbReference type="OrthoDB" id="10029313at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18737" checksum="5BA30F541B1C520E" modified="2020-12-02" version="1" fragment="single">FWLIYLPTTPPKSNNPEIELFLTNVRKEILNPGNIRKAKDNLTKEETVAIKNLKCNSNNIIRSQDKGSRFVLIDKEEYNGKMLEQLSNPLHYLSTSDNRTKLHLDRVKEWSDKWLVQHQITDKIANWVVNLEPKAGVAFGNVKTHKNNNPLRLITSCCGTAIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JU84</accession>
    <name>A0A7D9JU84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021303">
        <property type="protein sequence ID" value="CAB4035710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JU84"/>
    <dbReference type="OrthoDB" id="5984509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="85" mass="10513" checksum="A6913604C76A52FE" modified="2020-12-02" version="1" fragment="single">FHRAWNYRVQVRHPNLWIFIRHLKDLQAQTNQGIRSMDNGGQPTRRRRRWQRLENQLQRLKTDYINGVRDVQRYWNAVSHLVTTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K3E0</accession>
    <name>A0A7D9K3E0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083707</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027266">
        <property type="protein sequence ID" value="CAB4040797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K3E0"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="416" mass="48516" checksum="9CFAB3FB86FA5F79" modified="2020-12-02" version="1">MSLKTSKVPQKWKSANLLPLPKESPLNSCNQLRPISLTDIIMRLFEKCVYKSEIEPITRNNIGPDQFAYKKGHNSTMALIKSQHQWLEWLDKNANYVRVLSFDFSKAFDSVPHDLLFEKVKKLPINPYVVNWLISFLENRIQRVMVDGMVTEYLYINRGVPQGTVLGPVLFSIMVDDIKTADPSNALVKFADDLTLGVPGNESGDTSRSEAACLQDWAEENRMPLNLEKTYEMVVRRHTSVVLPELIPSIKRKTWLKLLGVTLQDNPCNWDLHFEEMLKKASGRMYIMRVCKYYGLSIKQLDLLFDSLIMSIFTFAIELWGCAYDGKYLNQIDKFIKRAHKNGYISKRTHIKEIRDKRDKKLWNKITSTEDNALLELLPEKRSRLLRPRGHEYELPLVRTERFKRSFINRCLYNFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K990</accession>
    <name>A0A7D9K990_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tyrosine-protein phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005151">
        <property type="protein sequence ID" value="CAB4005286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K990"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="entry name" value="Protein tyrosine phosphatase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000242">
        <property type="entry name" value="PTP_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00102">
        <property type="entry name" value="Y_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="(Phosphotyrosine protein) phosphatases II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyrosine-protein phosphatase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7081" checksum="A043834CDDA54066" modified="2020-12-02" version="1">MAADIGLRVYNESDKKSMVNVFDCVNKMRGDRNGIVSSKDLYKYIFKVLKNITDSASTSDSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L3P1</accession>
    <name>A0A7D9L3P1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001332</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013419">
        <property type="protein sequence ID" value="CAB4025112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L3P1"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000063">
        <property type="entry name" value="Zinc knuckle domaincontaining protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20760" checksum="9B77EE4112145F0C" modified="2020-12-02" version="1" fragment="single">MVLDDASKDVVTINTHRGLYRYYRLPYGVSSAPGIFQRTMESLLNGIPYTGILLDNILISGPTDEEHLQNLEEVMKRLSEAGLRLRKSKCRFMQPTLECLGYRIDETGIYPVEAKVKAVQEAPTPTNVTELKAYLGLLNFYGKFLPNLSTELEPLYQLLRKNQRWKWNTEQIRAFERSKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L803</accession>
    <name>A0A7D9L803_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NACHT, LRR and PYD domains-containing 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039557</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015325">
        <property type="protein sequence ID" value="CAB4028213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L803"/>
    <dbReference type="OrthoDB" id="8436363at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13516">
        <property type="entry name" value="LRR_6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00368">
        <property type="entry name" value="LRR_RI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17302" checksum="3AE68D7583E89651" modified="2020-12-02" version="1">MLDITENGYLDLNMLDISPVDCKGLFDFLVHVRELKKLDISQNHLTDQAVLELCKFLRNSILGKLDISHNYITDKGLEMLGDALSEETCGLHYLEIGWCYKATSNGYNKLYDTLRKAGFDITTMALTGSNNIVQYTMQKPLPYADNCYNTKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFQ8</accession>
    <name>A0A7D9LFQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Nuclease HARBI1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A049339</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018778">
        <property type="protein sequence ID" value="CAB4032882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFQ8"/>
    <dbReference type="OrthoDB" id="5948010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4032882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="33217" checksum="0EC5C7FAE6E16AD7" modified="2020-12-02" version="1" fragment="single">TQVAITLYYVADEGRLQKVANAFGIARCTASVVIRRVTQIISYVMGRSYIKLPETEDAVKFLVTEFYKIHGFPQCLGAADGTHVPIKRPQENSTDFINRKGRHSINVQACADYKYCFLDVVIKWPGSVHDARRFANLSLNQKLRDGTISSCPRVVVENEDPVPICILGDPAYPLLPFLMKELAEGGKDAQEQFFGYRLSSARMVIECAFGRLKARFSCLRREMDINIDDLTAVIHTCFILHNFCEMNNEIVSQQMVEQAVQYDVEFQRQRQPGPNLPTNETAGKRIYVKYFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LK26</accession>
    <name>A0A7D9LK26_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Hemicentin-1 isoform X4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A007866</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018338">
        <property type="protein sequence ID" value="CAB4032360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LK26"/>
    <dbReference type="OrthoDB" id="5990505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005911">
        <property type="term" value="C:cell-cell junction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050839">
        <property type="term" value="F:cell adhesion molecule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051275">
        <property type="entry name" value="Cell_adhesion_signaling"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11640:SF31">
        <property type="entry name" value="IRREGULAR CHIASM C-ROUGHEST PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11640">
        <property type="entry name" value="NEPHRIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4032360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="29200" checksum="AC7C7E7DF63DCC4E" modified="2020-12-02" version="1">MKAVLSTNFLFSGEASIIFDPPSPPIQYVFNVGEVRLAWHYKTSGISSMPTAKLSAEIKGNYEQILILIGKRAIYPDSPYKGRLTGWRNMSFALIIIKNLTSDDFTNYKITVGDTSLQHDVEITFANYSVGVTHGGKSNGSILKKEKISRNETNIYTCVANNQYGFHNQSVLDVKVQHPPSLFRVTSSSESSYIGQMVTFTCTGDGDPVPVYSWKTPDNHTSTGNNTLVVLLHSSRQFGMYTCITSNLHGHTTRNITLKQLCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LU24</accession>
    <name>A0A7D9LU24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025042">
        <property type="protein sequence ID" value="CAB4039182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LU24"/>
    <dbReference type="OrthoDB" id="7485566at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48462">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48462:SF1">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="462" mass="50650" checksum="3E632020856E2A60" modified="2020-12-02" version="1" fragment="single">KGKFVKPLIYSPMQIAEASCLSTLLPVGIDDEGNTQWKSTKEILLDKRPHGRTPSVNILLQDTKQSYFDPILYNRITGETIRDAANKIQGSAGPSGVDAHLWRRFCLSYKTASSDLCNALAGVARRLCTKSVLPEEDTEGMLLVDASNAFNTLNRNEALHNIHATCPAISTMLNNTYKAPVRMFVTGGGEISSMEETTQGDPLAIAMYAPVSRQALKQLFHALNHIWDSEDTEGMLLVDATNAFNTLNRNEALHNIHATCPAISTMLNNTYKAPVRMFVTGGGEISSMEETTQGDPLAIAMYAPVSRQALKQLFHALNHIWDSEDTEGMLLVDATNAFNTLNRNEALHNIHATCPAISTMLNNTYKAPVRMFVTGGGEISSMEETTQGDPLAIAIKTTMVVKEECLDRAKELFENTGITITTDGHKMLGAACGKRLFVEGYVADKIKEWDEEIMTLSTIAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2F6</accession>
    <name>A0A7D9M2F6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphorylase b kinase regulatory subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A086254</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Glycan biosynthesis; glycogen metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphorylase b kinase regulatory chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030701">
        <property type="protein sequence ID" value="CAB4042735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2F6"/>
    <dbReference type="OrthoDB" id="5971574at2759"/>
    <dbReference type="UniPathway" id="UPA00163"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005964">
        <property type="term" value="C:phosphorylase kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005977">
        <property type="term" value="P:glycogen metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011613">
        <property type="entry name" value="GH15-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008734">
        <property type="entry name" value="PHK_A/B_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10749">
        <property type="entry name" value="PHOSPHORYLASE B KINASE REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10749:SF4">
        <property type="entry name" value="PHOSPHORYLASE B KINASE REGULATORY SUBUNIT ALPHA, SKELETAL MUSCLE ISOFORM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00723">
        <property type="entry name" value="Glyco_hydro_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="1" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0321">Glycogen metabolism</keyword>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0636">Prenylation</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GH15-like" evidence="2">
        <location>
            <begin position="24"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU364123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8734" checksum="D596DE1F1BC6DEAC" modified="2020-12-02" version="1" fragment="single">DPVTGLLPPTGGQRKFGSRDYPGDAWVRDNVYGSLSMWSLALAYSKNADHDDEKAKVFELKQSVVKLMRGLLMSMMQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLX4</accession>
    <name>A0A6S7FLX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057348</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000022">
        <property type="protein sequence ID" value="CAB3976956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLX4"/>
    <dbReference type="OrthoDB" id="6426746at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="256"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="259"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="282" mass="31761" checksum="CF4390095E0EF5CC" modified="2020-12-02" version="1">MNSSQFDRPISLPSLPRDHLTPERFLATVERVVQSNNQFTLDDSLNVNVIHVEMPQGAGNGKRHDIVNLKAYLNKKAALCSGYCRGEKQKAVLSQMQEKALIKSPTTHVETYASCVTHRTVPLLSGNIAETERNVSNAIKTTTVQPKRYVIPWSNSTLEKTQYLCENGYNVIEIWTCDIQCELNNFKICEPLEPQQAFFGGCPNATHLYHEARDDDKIHYVDFCSLSLASGFPAGCDTDEKAEYISDYAAKQEIQLDQETDHQESFKTDHQESGDRSSRILA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVI3</accession>
    <name>A0A6S7FVI3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Syntaxin-6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A018926</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Golgi apparatus</location>
            <location evidence="9">trans-Golgi network membrane</location>
            <topology evidence="9">Single-pass type IV membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the syntaxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000632">
        <property type="protein sequence ID" value="CAB3983598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVI3"/>
    <dbReference type="OrthoDB" id="546861at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048193">
        <property type="term" value="P:Golgi vesicle transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd21443">
        <property type="entry name" value="SNARE_NTD_STX6_STX10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd15851">
        <property type="entry name" value="SNARE_Syntaxin6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.58.90:FF:000004">
        <property type="entry name" value="Syntaxin 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.110:FF:000006">
        <property type="entry name" value="Syntaxin 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010989">
        <property type="entry name" value="SNARE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015260">
        <property type="entry name" value="Syntaxin-6/10/61_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000727">
        <property type="entry name" value="T_SNARE_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12791">
        <property type="entry name" value="GOLGI SNARE BET1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09177">
        <property type="entry name" value="STX6_10_61_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00397">
        <property type="entry name" value="t_SNARE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58038">
        <property type="entry name" value="SNARE fusion complex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47661">
        <property type="entry name" value="t-snare proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50192">
        <property type="entry name" value="T_SNARE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="231"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="110"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="10">
        <location>
            <begin position="47"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="110"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00037801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3983598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="28494" checksum="BB949625C06B7B84" modified="2020-12-02" version="1">MSLEDPFFVVKGEVQKSMNNVSDVHEKWKSLLNNPATVGREEYNLTTSELRNSIRSIEWDLEDLEETIQIVEGNQRKFNLSPDEIESRKNFVKQTKQHLNEIKASVNSPAAQAKLQSSNRQALVGSSGRSSTNKYSRLDQDIERSNQDFIEDQQQQQQLIMDSQDDQIQLVGHSVGVLKTMSQRIGDELDEQNVLLDDLGHEVDMTDSRLQQTLQKIEKVLKLSDDKKQTYVLIGLIVILVVIVVLFIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVM6</accession>
    <name>A0A6S7FVM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidylinositol phosphatase PTPRQ-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000099">
        <property type="protein sequence ID" value="CAB3978251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5961525at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="CDD" id="cd06263">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.10:FF:000028">
        <property type="entry name" value="Neuronal cell adhesion molecule"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015373">
        <property type="entry name" value="Interferon/interleukin_rcp_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013099">
        <property type="entry name" value="K_chnl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050713">
        <property type="entry name" value="RTP_Phos/Ushers"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957:SF3">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09294">
        <property type="entry name" value="Interfer-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07885">
        <property type="entry name" value="Ion_trans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13385">
        <property type="entry name" value="Laminin_G_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00629">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50060">
        <property type="entry name" value="MAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1811" mass="202745" checksum="995DEC69868F871A" modified="2020-12-02" version="1">MDVAIMESPTFLDHYKCLSFWYHLYGRRMGTLSVYATDSSEKRVLLTQVSGDVGNQWRMMQVDLDDDDLDVTGVFRIIIEAKRGEGFQSDVAVDDISLTKCVPPCEVGMKCDVKSLQCVYDGIYDHLWTMDTRPPRDDKNAFSDNSSMADSANRIPGVIDQAIEQRGGVSSLASFSDQCFVGTCFPTFTLSFWLKYGEISNTFWVLLGFAPRFYIGQKNDYAFKNHLHVWSNVALRKCEFEVFAPAEIWTHLIFVVKDENFTVYLNGHEVKNTTLQCTLLSQGPGSVINTRLGGHSSDTKTFAIDDLRLLFDAFSVDDTLEYYKTITGYNQTIWFKANLTTIAWQEELSDDESDVFRSMSQFVSNKVNATLGERSFINDVNVRKFMKQSITVAEIDIVYHSVSYYDILLLEEAIYVNNTLDGLQVNGLEIDSNSVPNNGLENQLTGVGLNATSLSVTWSPIFPGNVNGVFQGYKILYTETENASYTEYVSKTKYANYTEEIIDGLEPLTNYTLRVLAFSLSGDGLLSDPVFALTLDGIPTESPNMTVANITSTSIYLNWTLLPISTDDYKQLVGYKMSYWKESEESKEFNMTFPPHVSEILFENLEKWTVYCFRIAGFTMADSGPNGTECFRTLEDVPEHPPSNVSAKQVTTSSIELEWSPPPEVPGIVRYYNISYRVLNISDSEVVELTAPGNRTSYSIEGLTGLMLCEINITAFTIGAGPSQTIRVLTHEGVPLAAPNISLVNISSTSIDMNWTALPWDLHNGILLGYRTWISKVETGNGAVQTPTLQTFSPNEFYKHMMNMSKWTTYCAQVAAFTAVGNGPESVKECTRTFEDAPEEAPRNFIAVEVNIHSIKVEWEPPPAASIPGVVRLYNFTYRNLNYTNENLTVLEIEHSYDSLVLERLHGLTLYEINITAITILPGPWRTLFVLTEEGVPVIPPPSIIWYNVSSTSIKSTWKPIPPHLRNGIVIGYNMSFWKQSNPQNVMNVTVSDEVKMFRYLVKWTIYCGQVAAFTRIGEGPRSQVQCIRTSEDEPETSPLNLNGTNTTWTSFYLTWDPIDSEFIPGILRSYRVTYEIQDPGFHQAYDGSFSVDSHDTSVNLTGLIGLTNYKITVHGYTVVGGPVAEVYLKTKEGVPTSPPEEITPTEITTTTIALSWKDIFLPERHGLVKGYRVTYNKLERRSKREVEEKTLTFDADTHTAFLFKLDPYTNYSFTVAGFTSQGMGPKKYFLIQTEEGVPGVAPKGSYGVNFTGPTTIFMGWGSLSTSELQGRLAGYEVRYREFSVADEILENPGPEITKFIPSDINGVRLTGLETYTTYQVRVAAASGGGRGVFSGILYIATCRCHKRLTTNYWNFPPYTNISSGQKSDRGFFPYLLDMVTLSCCQNCLEHGTSEVDYFRDGLGNNPVRDSDIDVKRSLTLETDYSFPVYGYNGQTTYSKYYGFASIMDIVGTVFFTLKPDYSVTQGKVLLASVLSIVPFLAIAVLFAYIAGVIMWALECGHNEDEYPPRFFSGAASGFWWAYITMTTVGYGDKTARTFAGRVFAIIWVLTGLCICSLLIGTISSAFTSSTTPPDSKDIMIYGSKVAALQDSADHRLGLRRNAKFNKDNITYHTLDELQKVLLSGAVDGILVDAYVADARQELFSQFLITKVIDLTSSYGVVMGTDAKKLRKCFNQFWKVNAAARTNFISNNSNPVVLPEISTAELVGQAYNPQSALYQISLYSCAVALIVLFLCGCIYEIIRRKRRSTKVNCEQDTIISCSDLRNQAALLSESINKKISELQRKHMSEIVAFSRLQRRKRQKDNDGGQIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FX41</accession>
    <name>A0A6S7FX41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Gem-associated 5 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A055061</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000516">
        <property type="protein sequence ID" value="CAB3982557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FX41"/>
    <dbReference type="OrthoDB" id="7326421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032797">
        <property type="term" value="C:SMN complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003730">
        <property type="term" value="F:mRNA 3'-UTR binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000387">
        <property type="term" value="P:spliceosomal snRNP assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00117">
        <property type="entry name" value="TFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.60.10">
        <property type="entry name" value="CD59"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056424">
        <property type="entry name" value="Beta-prop_GEMI5_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052640">
        <property type="entry name" value="Gemin-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045860">
        <property type="entry name" value="Snake_toxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056421">
        <property type="entry name" value="TPR_GEMI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46362">
        <property type="entry name" value="GEM-ASSOCIATED PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46362:SF1">
        <property type="entry name" value="GEM-ASSOCIATED PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23775">
        <property type="entry name" value="Beta-prop_RIG_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23774">
        <property type="entry name" value="TPR_GEMI5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="13"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Gem-associated protein 5 second beta-propeller" evidence="4">
        <location>
            <begin position="521"/>
            <end position="828"/>
        </location>
    </feature>
    <feature type="domain" description="Gem-associated protein 5 TPR" evidence="3">
        <location>
            <begin position="1018"/>
            <end position="1169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="848"/>
            <end position="892"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="956"/>
            <end position="982"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="854"/>
            <end position="871"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3982557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1170" mass="131044" checksum="BD1C9295B9D9D417" modified="2020-12-02" version="1" fragment="single">RLACYKCQYRTDMDGQFCNKTVKECDEDEPKCMNYHYTYKNNTEIFGKGCAKDNECRNTTKTCENLKKNQHFAGCNIWCCQKPQCNRGSTQRRILILEFLVLVLSLELSVIYIYCEPATEGQQAQLKTCKQRATSTSSTVFFKQEIIILDNVFGNNAMNDRPILASPNWYNSAISDISLDGIFAYGGKNTIFLLDLTGSECCQYVGQLCGHKDRVTSVQFCKTSAYSRCCVSASEDLSVISWDIDAKEPISEHNRHQARITTVSWSQASHDWIYSGDEKGSLFSWNHQRNEVYEHVPLTGQINCISCPPDEDGVVVVGYKTGQIIVLMLQKENQEIVNVLKGHNDEVHSLTWSPVPASKLPGEIFGAPKWQESGYILASGSRDKTIRLWNISLGQFIAVVHVPSRSSKGRTSRDDYHMKSRLWNTLCWPETDPNCLISSGFNGDILAWNLSKNSKQKWQLFGEGKHSRIVFNMCHYSATDVMISVSMDRQIHIWNRRDATVITSLPSCGGFAYSLDVSVLDPSRLAVGVGDNVIRIWDTTAQGSSYGVTNLWRGIGTKVMKVLWHPVKEGLLAFGTEEGKVGIYNVMSQTCNVSRMYHKKSVYSLSWGPPSGSSDGEGDKIWHLYSCGGEGTILEHNPEHLHGEAKDVDILIKATNDIKHNLAGHSEVSCKPDRSLMAVGNEDGSIIFYRFPDLKLLSTINIHKKNITCLAWYRTLDPNDSRSTFLASGSNGSDVHVHDLKHIVDGIDNLDQKVVASSYRWLSGHNARVTNVVWSPHSFSKLASSSYDGTVQVWDVVKGEPLVNYRGHSGRVMTVAWSLMDPDVLFSGSDDFTVRPWRISQQVFKEPPIEVQKHSKSKNKKKKAASTANRKKNVEHMTAESTAPLLEEKQSMGNEIMCDEKVPLKRYTEQEDLQHPALSKSCTDIRKSTSLQFDKSGAEKIEDYVSVAHEPLVSSKGTSVDTKKKRKKGKSMFPLSASGDNKTRSITSQECVNIAKLLTNTTGYPEDALHISGENVNIGLFADRKAAFNMLSEEGIHHAESGNTDYQLQLEIWKGNIGKALELAVEKKQLSDWLVAISHLAGEQVRLTVTEAFAEQLVCQGFLHRAAVYYLACHKVYEAIGMFKTAGMYREAIALAKVRLLPSDPLLLDLYSSWGRRLESEYALEQASKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6G9</accession>
    <name>A0A6S7G6G9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064219</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001388">
        <property type="protein sequence ID" value="CAB3988824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6G9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11742" checksum="1CFA94D30DEB7B22" modified="2020-12-02" version="1">MSNDKLNEAVLNDRTDKDLRSPISVNETDKTKQAKVTSDIIKASNETQDASLRKEISDRCSTLVTSHDQGQQVNDVAKLPAIAVLYEILKQLSSKWEKSTYCSEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G711</accession>
    <name>A0A6S7G711_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Galaxin-like repeats domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025118</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000779">
        <property type="protein sequence ID" value="CAB3984742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G711"/>
    <dbReference type="OrthoDB" id="5980437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055284">
        <property type="entry name" value="Galaxin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056601">
        <property type="entry name" value="Galaxin_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34490:SF3">
        <property type="entry name" value="GALAXIN-LIKE ISOFORM X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34490">
        <property type="entry name" value="PROTEIN CBG12054-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24748">
        <property type="entry name" value="Galaxin_repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Galaxin-like repeats" evidence="1">
        <location>
            <begin position="33"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18381" checksum="3DC337B09A01CBEC" modified="2020-12-02" version="1">MKWLFVCVGICLLYAIVANASAEEAKVRNRRALCGGKSYDYRFRVCCGGKILWKGNGASCCGNRNYDYRFRVCCGGNILWKGSGSSCCGNRNYDYRFRVCCGGNILWKGSGSSCCGNRNYDYRFRVCCGGNILWKGSGSSCCGNRNYDYRFRKCCPGNVIKSWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9C9</accession>
    <name>A0A6S7G9C9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">C17orf113 probable zinc finger domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038429</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001586">
        <property type="protein sequence ID" value="CAB3990024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9C9"/>
    <dbReference type="OrthoDB" id="5984446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057456">
        <property type="entry name" value="Znf_C17orf113"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF5">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25431">
        <property type="entry name" value="zf-C17orf113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C17orf113 probable zinc finger" evidence="1">
        <location>
            <begin position="117"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="39071" checksum="B85B055AEDF56550" modified="2020-12-02" version="1">MWKVIRRCVPRKKVSQPVYTRDMKELADEFNIFYTSVGVKAAEESKKIAIANNLPSVQPNNIVLNNDTDEFNFRPVSSYEIQHKSCDEVKRISTKGDRFQHAWITDNKLTYCEKTGYNWLIYEEGEGMFCFICRKHNTENEKNKCKKFNLQAGIRFKRKAVEEHANSQQHKAAIMCELINRTSPFQAELDRKEQKNDAVYYNAFLAIYWLAKEELPNFKISSFLYVLEQLGLIDMKYFQHRSAGSFREIFLALGYQIKSQVAEKCRKANWFGLLCDEVCDISNQEQLLTFIKYVDPQTNKATTDFLSANDLFQNSQSADANTIWTVLNKQLEDSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBM7</accession>
    <name>A0A6S7GBM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Potassium voltage-gated channel subfamily C member 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A036689</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000946">
        <property type="protein sequence ID" value="CAB3985966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBM7"/>
    <dbReference type="OrthoDB" id="10025005at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005251">
        <property type="term" value="F:delayed rectifier potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001508">
        <property type="term" value="P:action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.710.10:FF:000020">
        <property type="entry name" value="Potassium voltage-gated channel protein Shaw"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003974">
        <property type="entry name" value="K_chnl_volt-dep_Kv3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537:SF252">
        <property type="entry name" value="POTASSIUM VOLTAGE-GATED CHANNEL PROTEIN SHAW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="VOLTAGE-GATED POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01498">
        <property type="entry name" value="SHAWCHANNEL"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0407">Ion channel</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3985966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="22594" checksum="A69E09FC05AACF74" modified="2020-12-02" version="1">MAASGSTRRRSCKGYSTNTMLLSQRVVLNIGGQRFHTYFGTLTAIPHTRLCWLAQKHPFSPEYDHANEEYFFDRNAVIFNEVLNYYRTGQLHCPTHICALQFAEELGFWGINPQNMEPCCWVHYKNHIKNQKSLQSCAKEKQEITASTVFDVHGGNAQASSEACADKIAVMWKKYKKMAWTVLEKPNSTTASKVRCGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFZ5</accession>
    <name>A0A6S7GFZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A057693</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The aspartyl protease (PR) mediates the proteolytic cleavages of the Gag and Gag-Pol polyproteins after assembly of the VLP.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000689">
        <property type="protein sequence ID" value="CAB3984051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFZ5"/>
    <dbReference type="OrthoDB" id="10059408at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="15" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-1188">Viral release from host cell</keyword>
    <keyword evidence="14" id="KW-0917">Virion maturation</keyword>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="219"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="16">
        <location>
            <begin position="232"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB3984051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="683" mass="76928" checksum="E81ACE3A8DCE7971" modified="2020-12-02" version="1">MASTGYGPSRESRWSRLTFDGNESNYELWEAKFLAHMRLLKLKDTILPSEEEADATKNEECYAELIQCLDDTSLSLVMRDATDDGRKALQILRDHYSNQGKPRIITLYTELTSLEKALHETVTDYLIRAEKAITALKNAKETLSDGLIIAMILKGLPDSYKPFSIHVTQSARASKKRKSSTPTEFPSQTMTCYGCGKRGHLVRECPAKSEKKWCNYHKSTTHSDSTCRSQQKSKDQAKQVSEKENTSKDEHSFAFKVNDEATGKINRMGMLVDTGATSHIVTTDILKQIDMTFKPSKHYIELADGTRASNIALKRGDAEVFLKDTNGKCVKTVLKNALYIPSYPQDIFSVKAATSNGAEPRFAQDTGELTLEDGTIVEIEEHGRLYYLTSIDSHENDSVSEVDKGVVKGMKFSGKIESSKLGCNTCVEGKFVNSRSRIPDERSQKSLEKVHVDLAGPVSPVSREGFKYCIAFTDDFSGAVFVYFLKCKSDTFVATEKFLADITPYGKVSCIRSDNGSEFTGKAFQTLLRERGIKHETSAPYSPHQNGTAERHWRTLFEMGRCLLLQSGLPKTLWPYAIQTAAHIRNRCFNKRTKTTPYFSLTGKVPDLSKMWIFGSECFAYEQEHKKLDSRCSKGVFVGYDKNSPSYLVYYPKNGKIMKHRLIRFIKKCSVEQHTQTDESSTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHA2</accession>
    <name>A0A6S7GHA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062651</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001387">
        <property type="protein sequence ID" value="CAB3988819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHA2"/>
    <dbReference type="OrthoDB" id="5987296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15600" checksum="C0AFD13CAE8C4B69" modified="2020-12-02" version="1">MGHIFSSEGIKIDPDKVEAVKEMPRPTDVEAVQRLNSFVNYLAKFLPKLADVMEPIRRLTRKDTDWIWAKEQEKAFEDVKKLLTEAPVLSYYNPESELEIQCDASQKGLGATLLQQGKPVVYISRALTETEQCMRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHZ0</accession>
    <name>A0A6S7GHZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transient receptor potential cation channel subfamily A member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036809</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001757">
        <property type="protein sequence ID" value="CAB3990933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHZ0"/>
    <dbReference type="OrthoDB" id="5987460at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20522" checksum="35A844F04CFF2BDB" modified="2020-12-02" version="1">MTEENDVTKATCTEDCVYTRYEYESIFIHKKKSIISASTILKFWEESEIEDDAEQIFSGRIAQKIKFILESIDMCHDATGDEESEALMQMIKKVMTCCQELLLTLAELKLPIVRPRWCDLTDAGPGVSNFKVKFRDAELYRIFNSDHRICVHRSRGDSGQNEAERTNSAIGDAVVDAVQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GN90</accession>
    <name>A0A6S7GN90_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Hemicentin-1-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A059820</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000974">
        <property type="protein sequence ID" value="CAB3986180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GN90"/>
    <dbReference type="OrthoDB" id="5969272at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051275">
        <property type="entry name" value="Cell_adhesion_signaling"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11640">
        <property type="entry name" value="NEPHRIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3986180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="12896" checksum="07AC1A352D669C61" modified="2020-12-02" version="1" fragment="single">MVADKGEGGNPSANVTWYKDNVQIGAAGNEEQTLTLNPPEEPYFKENVDVGKTFAITCESNGHPSPRYTIIHNNTKIVSNDKMYTIDVVQYSDAGLYKCIAENKLGNSSTIYYLSIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQP0</accession>
    <name>A0A6S7GQP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002363">
        <property type="protein sequence ID" value="CAB3993955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQP0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="196" mass="22637" checksum="A51173B3503915A2" modified="2020-12-02" version="1">MMSDINEHDNLGAKKDEEIDICVNLKDDSVTKRPASEVSDSNKRYQTLQRRKNSGIILLNNAEKHLTELLSLYDHKTGHRSISEDEETDADKIIDNLDKELTELANEADLHIKRANDQLDERIFNGEKDSEVSSDCYSKASSITTTSKASKISSTMRRQQEWKEAHERLNRLEQEQLALEEDINKRQTCFNRTRNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUL2</accession>
    <name>A0A6S7GUL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">BTB and MATH domain-containing 36-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067381</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002712">
        <property type="protein sequence ID" value="CAB3995698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUL2"/>
    <dbReference type="OrthoDB" id="5968623at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22744:SF17">
        <property type="entry name" value="BTB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22744">
        <property type="entry name" value="HELIX LOOP HELIX PROTEIN 21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="334" mass="37596" checksum="F73E4BEB0C479FBB" modified="2020-12-02" version="1">MATKNDKNVFASPWNDSDMVLVLEGRELHVHKWILKSQSPVFKAMFDGHFQEASEARITLKEKYFQSMVRFLKVLYPSSMFGETKSPLDDECWLSILALAEEYQCVNVIKQCIDEVKITPQNALQILPYAVKYHHTALPTIYDVINWSAPTTKLEKIVPEIESKEKSNTMLLTKCRFLESAVVKMQDAIISLIDDFVTQKKSADDALSSTQKSLDEATRKINDLQPPAAKNVIMSLAHVGAKHKGRHSTPIGYSSAYAAMPKQTYHGASNTTADYRCSHNVGVREISKTKSCIHCKEKYKEKFLVPIPSCQNTQNIFSMLQSGDDVATAVKNQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GV97</accession>
    <name>A0A6S7GV97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002386">
        <property type="protein sequence ID" value="CAB3994069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GV97"/>
    <dbReference type="OrthoDB" id="10068389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3994069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="479" mass="55334" checksum="A596FBFE6040023C" modified="2020-12-02" version="1">MQNKLFDIITLNETRLDSSVLNGEIEIPGYDIVRRDRKRSGGGVAMYIRSNIPYTIRKDLFPDNLELICVEIKKFKSKPQLITTWYRPPNSSVELFSEFENFLKLLEDENKEIIITGDLNCNILEQNKSLPTSKLVDLIDIYQLQQHIQCPTRITSTTASLLDVILTYYGDDKILDTGVIHLGISDHSLVYLCRKLSIPKAPPKTVFTRHYKNYNVNQFNNDLSEVFSLPLDSAILTDPNALWNDFKNKFLSVADKHAPIRQRRVKSEYKPWLTNEIKQMSYRRDYLKKQSIKLRSAYYDKAYKRCKNKLNNLIKETKQEYFRDKLSNAKNSKESWRTINKLLNKKPKTSEVKELDINGQLITDDDKIADAFNQYFSTIGSTLSDKITGNCTDPMNFVTPLDGSIFNFTSITLQETIDALNEIKTKKSPRLDGISIRLFKLLALVRRYFKGILVFRFELNRLGPGFVAMSPARRISSTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H023</accession>
    <name>A0A6S7H023_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Periodic tryptophan 2 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A077404</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the WD repeat PWP2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003045">
        <property type="protein sequence ID" value="CAB3997185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H023"/>
    <dbReference type="OrthoDB" id="3142434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034388">
        <property type="term" value="C:Pwp2p-containing subcomplex of 90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000028">
        <property type="term" value="P:ribosomal small subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000216">
        <property type="entry name" value="Periodic tryptophan protein 2 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027145">
        <property type="entry name" value="PWP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007148">
        <property type="entry name" value="SSU_processome_Utp12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19858:SF0">
        <property type="entry name" value="PERIODIC TRYPTOPHAN PROTEIN 2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19858">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04003">
        <property type="entry name" value="Utp12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3997185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="673" mass="75507" checksum="9AC3E11C36FDE298" modified="2020-12-02" version="1">MNFLTVAKIYTVSRDGALFVWSCNKDINELEMKDKNNEDSDGEVDVKWKKESKYFYHQDNTDLTCCAFHKQTKILIAGFSSGIFALHELPEFNLIHTLSISQKTISTVAVNPSGEWLAFGCSSVGQLLVWEWQSESYILKQQGHFYDMNVLAYSPDGQLVVTGGDDAKVKVWNTTSGFCFVTFHEHTAGVTGVSFTSNGQVILSSSLDGTVRAFDLNRYRNFRTFASPRPAQFSCLAVDDSGEVVCAGSLDTFEIFLWSMQTGRLLEVIAGHEAPVSSLCFSSSHPVLLSGSWDKTVKVWDVYSSRIARETLLLNSDVVALTTRPDGNEVAVATLDGQLTFWDISTAIQLHSIEGRNDLGGGRKSSDRMTAKTSSASKCFTSLCYTADGTCVLAGGKSKFVCIYNIEQQILMKRFEISRNRSFDAMQEFLNSGQMTDAGPLDLIDDSDDESNRKNLSLPAVRKGDMSSRKVKPEIRVKCVRFSPTGRAWSAATTEGLLTYSLDVAMVFDPYDLAIDVTPERTKQVLENREFAKALMLSFRLNEQDLILHVVESIPPQDIQLIVQHLNDIYVDKLLRFVARQIESSKHLHFYLMWCHHLLTYHGAKLKQRSGSIMPLLRTLQKNMTSHQKDLAKLCDSNRYNLQYILETSKFKRQDNDGADNLVTTDIEMADET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H1W5</accession>
    <name>A0A6S7H1W5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003629">
        <property type="protein sequence ID" value="CAB3999625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H1W5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="20081" checksum="BF6058B992C35254" modified="2020-12-02" version="1">MSEYESKNEASIGGLEEVDLSDDDSDDNFNLLFGVLVADMTRYGLWEGPFNRFAILIAWQVCPEANSLLRSKMSEYESKNEASIGGLEEVDLSDDDSDDNFNLLFGVLVADMTRYGLWEGPFNRFVILIAWQVCREVFYSLLRSKMSEYESKNEASIGGLEEVDLSDDDSDTTTTTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7P4</accession>
    <name>A0A6S7H7P4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein F54H12.2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003477">
        <property type="protein sequence ID" value="CAB3998947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7P4"/>
    <dbReference type="OrthoDB" id="5983470at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11302" checksum="37ACD5E6400F148C" modified="2020-12-02" version="1" fragment="single">MALETMHKDSCMCSKSDLDLFSIPPTQVVMEKGFWEDVDPITTISSSDTIEFLCAANSGVYTDLASSYLYVKAKITTAAGGNVDADIQVGPSNLWMHALFSQVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFS2</accession>
    <name>A0A6S7HFS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Plastin-2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A056830</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002474">
        <property type="protein sequence ID" value="CAB3994481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFS2"/>
    <dbReference type="OrthoDB" id="431378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005884">
        <property type="term" value="C:actin filament"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032432">
        <property type="term" value="C:actin filament bundle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051017">
        <property type="term" value="P:actin filament bundle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051639">
        <property type="term" value="P:actin filament network formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd21292">
        <property type="entry name" value="CH_PLS_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd21298">
        <property type="entry name" value="CH_PLS_rpt3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd21301">
        <property type="entry name" value="CH_PLS_rpt4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.418.10:FF:000042">
        <property type="entry name" value="Fimbrin, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.418.10:FF:000010">
        <property type="entry name" value="Plastin-3 isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.418.10:FF:000016">
        <property type="entry name" value="Probable fimbrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001589">
        <property type="entry name" value="Actinin_actin-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039959">
        <property type="entry name" value="Fimbrin/Plastin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19961:SF18">
        <property type="entry name" value="FI19014P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19961">
        <property type="entry name" value="FIMBRIN/PLASTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00033">
        <property type="entry name" value="CH"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00020">
        <property type="entry name" value="ACTININ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3994481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="615" mass="69155" checksum="9C9E25D370A7CB9E" modified="2020-12-02" version="1">MAELKQKVSFEEIAEFRSKFDKYVLPDSEKINMENFDELIKECDEQIPQFKLRKIVCDRRAAGESDELDFGEFLDIFSKLSTKTIGANFKQAVEKRENLTTVSTSSASAQGTKHSFLDAEKEMFSSWINTCLKDDSSLKDYLPIDAKKPNAIFAALKDGIILCKFINWAVANTIDERVMNRKKLTVYTIHENQTLVLNSAMAIGCSIVNIGAEDLIEGKPHLVLGLLWQIIRIGLFNRINIKHCPGISALLEGDESIADVSKLSPEEILLRWVNYHIRETGYSRIVKNFSEDIKDSEVYSILMKKIAPLTVDLDEPHITEADLTKRAEKVLENAKKLDCDSFVRPNDIVEGNPKLNLAFMCHLFNSHPSLVFDESEIIDIEETREEKTLRNWMNSLGVKPQVHHLFSDLSDGIALAQLFEQIKPGVVKWKSMTMPPFPKLSGKMKKLENCNYVVTIADELKLSVVGIGGQDIYEGNKKLILGLVSQAMHFYTLSLLQSIAGSDKPVKDDQIITWVNDKLQQHEKASKIANFKDPTIATSQAIIDLIDSIKPNSVYYPAVQTTDTDEAKFSNAKFAISMARKVGARIYGLPEDIVEVNPKMVMTIFACLMASGLKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HG71</accession>
    <name>A0A6S7HG71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc finger BED domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A018029</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004293">
        <property type="protein sequence ID" value="CAB4002223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HG71"/>
    <dbReference type="OrthoDB" id="1607513at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003656">
        <property type="entry name" value="Znf_BED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052035">
        <property type="entry name" value="ZnF_BED_domain_contain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481:SF9">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02892">
        <property type="entry name" value="zf-BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00614">
        <property type="entry name" value="ZnF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50808">
        <property type="entry name" value="ZF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4002223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="387" mass="43942" checksum="1900367040FACB0E" modified="2020-12-02" version="1">MATPNVSAADLRSKKSFTSPVWQYFGFKTDEDDNTKPTCKLCLKKVSAAGGNTSNLQRHLRNHPAKAQELGKQGQGPSKPKDMWSSNTMEPYMSYTIHFIDPDWKLQSRCLQTLYMPKDHTAETLADGMNEILNEWQLSPANQVCLTTDSGANIGKAASDLNWSWISCFGHNLHLAITYAMKDEPRISRAIGICKRIVAAFSQSWKRRRELSKAQLELELPVKSLVSECPTRWGSMHNMIARILEQERAIQRVLSEDRKVSHLVLKWQDIEVLKSLHKALEPMADFTDALSGDSYVTVSSIKPTLRFIENASTAEPDHTRLTADVKAKIQENFKKRYTSDTAQIILNTATWLDPRYKTEYLCEEGAKNAAENIKREIFELELANEFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGN9</accession>
    <name>A0A6S7HGN9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A010255</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020004630">
        <property type="protein sequence ID" value="CAB4003439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGN9"/>
    <dbReference type="OrthoDB" id="5978628at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="4">
        <location>
            <begin position="439"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="3">
        <location>
            <begin position="941"/>
            <end position="1139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="258"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="382"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="259"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="383"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4003439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1148" mass="131864" checksum="5FC83F4E175EA97B" modified="2020-12-02" version="1">MRSTQILHPLDDNASDTVIRARKELWKNIKNKLNDLKEGEDVTFDQLMKELDVSEYQYILAIRSSLNCPTIFLKRSPNELRINNYNPACLQAWRANMDIQFVLDVYACAMYIVSYISKAQKGMSDLLRNACAEAKEGNFTIKQQVRDIGNKFLNSVEISAQEAVYIILQLPMRKSSRNVVFINTSPPSDRVELLKPLSEIEKMSNESEEIHSGGLLKRYVERPDSLKNITLADWAAWYDSSGLSKYKKSVKKSDIDNLPLEDEDENNDDDLGVQNTESCVSSKKSVKKRSHARIIRSVWFNKESQPEKHYRELIMLFTPWRNEQADLMGAYSSFQEHYEARCDEISEQMEQYAVCSEDLNEIQHHLQECDDDAYDTIAPVTQDNERRDEHEGNTDTHPDLNETYDVSEDLGIPSRSPNNEPLILNETEDDEYRRLVQMLNKKHREFFYHALHLMKISDNPFYAFLSGSGGVGKSHLIKSIYQAALKHYNKRAGEDFRRVQVLLLAPTGKAAYLIKGNTIHSALSIPASQSLKIYKPLDSGRLNTLRCELGALKLILLDEISMVGNSMFTIQLNNRLKDLKGSKDDFGGVSIITIGDLFQLKPVMDGYIFTDLQSLNYYSVLAPNLWKKYFRMFELDEIMRQRESKMFAEILNRLREGKHTTADLQKLKERCVQESNCPQEAPRLFIQNALVDKYNEQVYESFTDNRYTIKAQDSVIGAASAELKEKIMRQIPYVPLRNSKQLAHKLKLAVGQRTEVATNVRTDDGLTNGASNIIKLIQLTDVNKPSGLIWVQFDYEDVGRKTRQENRTLYVRGIQSTWTPIKPVTTQFPVGRTKSAQVVRKQFPLRPASAKTVHRSQGDTQTQIVVNLNSNRAFPHIHYVALSRVTTIEGLYITDLCEDKISVDQRVVKEMEILRTEQSLNLCFKPLYMLDQSDLKVCYLNARSLHKHIEDVRRDINYSSMDIMIFTETRFNSSDTDDIYNIDGYRLFRNDVSQGTGPERPYGGTAVYSRVPLKEGYPYAHNVNGIEFTIIKTESNPHLNIIAVYRSPNIAISRLLSSLRSVLDEDSSAQNIIIGDFNVNWMVESDRQSLYNLMVVQNHYRQLITGFTTDNRTLIDHLYTNLIEEEIEAGILETYFSDHKAIWASLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLI6</accession>
    <name>A0A6S7HLI6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retroviral polymerase SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A048016</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005622">
        <property type="protein sequence ID" value="CAB4006845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLI6"/>
    <dbReference type="OrthoDB" id="413361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="7"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4006845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="24047" checksum="7D8E857F895A257B" modified="2020-12-02" version="1">MHVFGAVCYAYVQGSKKLQPRSKEGIFVGYDMYKNSPAYLVYYPESMKVERVRCVKFFDSTEFDNENRQIDEEVDSLPRNTSYGEQQAGTDENIEPAIPPVEGEVRYPTRPHNKPAYLSEYVVESITDSSANVAIDYCYRMNDIPACYSQAVNSTDSARWKKAMDEEFDSPVSNETFTLTMVRPNREIVGGKWVYMIKSGPNAEEIYKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HR48</accession>
    <name>A0A6S7HR48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041072</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003231">
        <property type="protein sequence ID" value="CAB3997930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HR48"/>
    <dbReference type="OrthoDB" id="10068084at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="28038" checksum="939F9534A6E7D297" modified="2020-12-02" version="1">MADSEFEEMLLELELESEILALKLDDILKLAQNIKVDESNVQGKSRFMILKAIREAIEEAVGKLTEKTECVKYIESIKVFLGPPPLGEPDDQGEGTRKEAEVLEVGPWEKSEVVELEEKIQELLSKLKEIKQKAQEKNGTGVSKKGSVQPENVIKVPLANLEKSLLHRDFKMQSAVGEPGQKDKLGYQSLVFQIEAGVRKQYSELEIVKAVVRAVLPGLQLKKYNGFTRSAKVKIDKKKFYYYLHQCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZG5</accession>
    <name>A0A6S7HZG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003620">
        <property type="protein sequence ID" value="CAB3999592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZG5"/>
    <dbReference type="OrthoDB" id="10011386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="31666" checksum="48A2A9378E4E710E" modified="2020-12-02" version="1">MEQEIRDRGMTWVFKGTVDEMKDSFMDHVDGTRRHKIYQHLESDCSTCCKEKVKARISDLPLVNYLNVCTNEPESQQLAFCSTHSVLASKHGIPTNLREFLHNYCKVEKCIDVFDSSTINLSDARQINNAASNLPDRDQTPSNVADSQAVTTNLTSFPKFSTSSTQPAVVSSELSTNSGQPVIVSVSLELATNSTPPVVVSADLYTNSARPVVMLAELSTSSARPVVVSSELSTNSSQPVIVSVSPELATNSTPPVVVSADLSTKSARPVVSPELSINSARPVVMSAELSTSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I0N0</accession>
    <name>A0A6S7I0N0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">WD-40 repeat-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007277">
        <property type="protein sequence ID" value="CAB4011824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I0N0"/>
    <dbReference type="OrthoDB" id="2161379at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19879">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR TFIID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19879:SF9">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="320" mass="36544" checksum="B16DDA155A14B4C5" modified="2020-12-02" version="1">MDYPDILRLNGHSNFVEDCCYSADSSRIVSCSGDQTVLLWDTQTGQKTQTIGKHDAEVWSCDFSPFGIYICSASSDKTVRIWDQRVQGEVATFKGHTKTVWSCTFHQSWSSWKLASASSDNSVKIWNWKTLSVEQTIENHQNNVDHVSFSNNGQSLVTCGRDWTVQILENYSDKSERKLKILAKHRSRVNYCCFSGTDDELVLSCSDDRTVKVWDRVTLANTKTFTGHLNNVWSCDTRPLGDRTILVSCSSDKTVRFWDMQDGSELRKIRTMDNEIESEDQLLCCRFSPDMSQLAVCSNNGNLYLIEMRGIVQKMLEHFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I311</accession>
    <name>A0A6S7I311_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050106</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003534">
        <property type="protein sequence ID" value="CAB3999188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I311"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="10"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="12"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14167" checksum="EE9F4A85598A2E7C" modified="2020-12-02" version="1">MEMHIKYQFQHAAAKASKANPRANPSNAGSQNQPGDRKEYFAKRYASKVFVNDAIGRWNDLKTEAGVKSDEEFANTLLSLFETSRRIQLRLVYDDTITASEGDSDEDSETITIGNISSLSQLHGSHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4I0</accession>
    <name>A0A6S7I4I0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084639</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007171">
        <property type="protein sequence ID" value="CAB4011503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4I0"/>
    <dbReference type="OrthoDB" id="5984646at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579">
        <property type="entry name" value="F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579:SF1">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30542" checksum="AAC5C61DF7D21162" modified="2020-12-02" version="1">MIDVYYGARYLLMNQHMLLHLTESVQNHGPLWCNSLFVFEDWNGDIGNYFHGTQNIPSQIMTAVTINQSLPSLIDKMPSGNVKDMVLKFRGYTDKTNRTHLKDEFYAIGALKRSGFVNPPYEDDLLLSLGVERISELTFFTRLQAGKAIFHSKEYKRATKRNSYTVAHQKESEMCYGQVEVHFINFNGPMECGAVIAPMAKSNEDVARSHEVLGKLVTHIVPLHQPRSKEQYDIVDIDNIVDVCLHMTFLDSEVKYGAHFPNHLEKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5S4</accession>
    <name>A0A6S7I5S4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007500">
        <property type="protein sequence ID" value="CAB4012407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5S4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6472" checksum="9E2DA6ACB2A1F91C" modified="2020-12-02" version="1" fragment="single">MKNQYRDFELPLFNKPTGAGIVKRLEKEFSCRGDRGVSVANRLSLPTWSTNSESNIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5T6</accession>
    <name>A0A6S7I5T6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Mutator-like transposase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A018959</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008159">
        <property type="protein sequence ID" value="CAB4014125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5T6"/>
    <dbReference type="OrthoDB" id="5972331at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049012">
        <property type="entry name" value="Mutator_transp_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20700">
        <property type="entry name" value="Mutator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mutator-like transposase" evidence="2">
        <location>
            <begin position="105"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="422" mass="46604" checksum="36197AD8509551A2" modified="2020-12-02" version="1">MVREDKRKKGSVKHGKRRGFSGKRWQEIADEFTNDANPRDANPQSLPGVSEVLPTNTTADRESVSTKKLLNSSFEKFESSRGILTREQARKVGLGSARDVEIATGFKIQDATLLSDCISAAAVCSSCRKATSKLKLYQRNSDREGLSESLFLQCSSCEVVTPLPTSNRLGGKGGVSHEVNRRAALASHQFGHAGLTQFCAGMNLPPPVGKDSYNKHLIKIEKAAKTSAEEVMKDAAKRLFEKVMSECPDDIEEDGEDLIAHVSVTVDGTWQKRGHSSKIGVIFVISVATGEILDYEVKSLFCHECKAHNNQDHEGEEFQEWKKAHEPKCEVNHVGSSEEMEAVSAVDIFSRSIATRKLKYTTFVGDGDSSSFGRVKEALDKKFGAAYEIKKEECVGHVQKRLGSDLRRYKNDMKGKKLLDGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBL1</accession>
    <name>A0A6S7IBL1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024337</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007903">
        <property type="protein sequence ID" value="CAB4013480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBL1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="36324" checksum="60CCD360C023D078" modified="2020-12-02" version="1">MGEFDGRHLALLTELVGSGNVLRGPSGGLRIERKSLPVLDRIRDDIVSGRTVGRKVSNGVKSEAYRWGVDIRKEEARRYREIEDWGRGIAEWKGFYFIQKERHLWKEREERKKREERRKKQKWRTFKRSEYVRRPGRVWNTQNSEIRVIDDDGKKERMESFGSEIRRLASERKRRRVKEERKRLKEEFMRTGEKLRRLEEKKFFMEEQGRRVDKIKDKLLSGRNCEILCRGVEMEKKGFEFRLDLENDERENTRALRKILGYDRYLEDGGYDEIEILICPNEIDNTEEEVGNYMDYGTLVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IC51</accession>
    <name>A0A6S7IC51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009071">
        <property type="protein sequence ID" value="CAB4016324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IC51"/>
    <dbReference type="OrthoDB" id="5560686at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.270.10">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046341">
        <property type="entry name" value="SET_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82199">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="18218" checksum="F8AC66132FB6FC59" modified="2020-12-02" version="1">MDAAARFINDSRGTSFQNNSKIKGRQMFRLKATKKIPANHEIFTSYGDSYWGKIFLTLAHATQHSNMARYQKGGNFRGKKYQRSKKRGGYIEKKIKNSKIGEQLKKIINVCNRLGNILIPKTKTKKTIQSGSSIGHSVRYVPPRRVRNTIPIAKQIMYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IH65</accession>
    <name>A0A6S7IH65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043162</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005139">
        <property type="protein sequence ID" value="CAB4005242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IH65"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20983" checksum="16F19F6DBAB5B30A" modified="2020-12-02" version="1">MDEECTLTSATLTRMKHIYSLAEDFTANCRDKSEVVMKSFDISGSELALNLGHTAIFKGLLCSASRRELYGVCYTAFYKFYQDLAVLDKGTLFLRDECRGLAHTFRQQHVKYGYSLPELSEVDMEGKLNGLMRIFVAEDPMFIDMFHGHPPKALVKAARDYELSYELYLSLDDLGEFLWNNIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IH85</accession>
    <name>A0A6S7IH85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042162</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009150">
        <property type="protein sequence ID" value="CAB4016523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IH85"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16661" checksum="0B697543B36FD0F0" modified="2020-12-02" version="1">MIYEHYDKLVQIWGSTPNVSPLKFGVSADNFKTVQVIQLDENDVNLETDCSPALNTSESGHDLGFPLPFELLPDINDDETNGMEISKTPKRKENVGKFVDDKRKHLQRNLSAAQRDKMLLDEAKEDAQFRKDMTEAVRESTESFKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7II14</accession>
    <name>A0A6S7II14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serologically defined colon cancer antigen 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057908</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009290">
        <property type="protein sequence ID" value="CAB4016863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7II14"/>
    <dbReference type="OrthoDB" id="5976291at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27052" checksum="14BCA0E04AC801DD" modified="2020-12-02" version="1" fragment="single">MDCEGESSKSLIDEQEAMEAVVNYLSEEINEIVELEECVTQGVNECLLTKSFPCGLCSKICKSKGGLTNHTRAKHGEKTPIIKSVTPIKSDVVCEIVCKAAQSVIKSKLYGEKMTKLISEADLKPSDLLVSSLLTLYGGYCEKLDRDKLLKNFYKLIPESAKMFETKSKEMNVPAYNLIIIHIPDLVVGFYKRGNVQEKLPVIKPIEQSEFGPLSYVAGYIIAKMYRKSKATAGKETPEQLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJV6</accession>
    <name>A0A6S7IJV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005404">
        <property type="protein sequence ID" value="CAB4006082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJV6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21650" checksum="55C8F767E1C9B15C" modified="2020-12-02" version="1">MTWTLIQTYSFNNTILISSQFNEIFTTLYENTPISENTLVWNGYRLSNPRMQAIKENSEFLLFTCNYEKSLSLYGSDYVEIYLPDLEGDVLDGNGTLDVFIERGHIGGQYFGDCHTWLAQNAREILHVDMYYGYPACSEFTTPSITNYTLCNLFHYFGNYQFGHNCLDVAHRCVESPESTTQLWFGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKL0</accession>
    <name>A0A6S7IKL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081596</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009409">
        <property type="protein sequence ID" value="CAB4017110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKL0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="16303" checksum="317DD55DF2B77AB1" modified="2020-12-02" version="1" fragment="single">NRRTHHQNTRTEELAIRIQERKNSLSENNIRRTHHQNTRTEELTIRIQEQKNSPSEYKNGRTHYQNTRTEELTIRKQDPKNSPSKYKNRRTHYQNTRTEELAIRIQEQKNSPSEYNNGRTQHQNTRTEELTIRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ILH3</accession>
    <name>A0A6S7ILH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Tuftelin-interacting 11-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A081397</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TFP11/STIP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010063">
        <property type="protein sequence ID" value="CAB4018567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ILH3"/>
    <dbReference type="OrthoDB" id="4822at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071008">
        <property type="term" value="C:U2-type post-mRNA release spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000390">
        <property type="term" value="P:spliceosomal complex disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000467">
        <property type="entry name" value="G_patch_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022783">
        <property type="entry name" value="GCFC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045211">
        <property type="entry name" value="TFP11/STIP/Ntr1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23329:SF1">
        <property type="entry name" value="TUFTELIN-INTERACTING PROTEIN 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23329">
        <property type="entry name" value="TUFTELIN-INTERACTING PROTEIN 11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01585">
        <property type="entry name" value="G-patch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07842">
        <property type="entry name" value="GCFC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00443">
        <property type="entry name" value="G_patch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50174">
        <property type="entry name" value="G_PATCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G-patch" evidence="4">
        <location>
            <begin position="65"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="107"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="252"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4018567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="442" mass="50690" checksum="AA927B54467CC2F1" modified="2020-12-02" version="1" fragment="single">EILLSQGSRESSPSARKKEKPRKLFHESASKSPGVSSQSDPDNKIYARMMQRNAGKDFASWEQHTKGFGTKMLKKMGYEPGKGLGKEGQGIATPVEAFKRGGRGALSYYGPEKHTKKQEAQLPEEDVEEEDFRQQLSQWRKSDVKGKPKYVYKTVDEVKESGKSKRPGLSLSTSNIKVVDMTGREAKILTGYGFFATQHANPEDETTVLSQVKDDRAFSLPELEYNLNLLLDLSESEIVQVDKQLRHERDLIVNLKYEEERLGKEIEQEENDMKQLVDVMAIIEKCRQQSTGASNESLSLQDCEVLFEKLQNEFADLYKMYELVTMAVPLVFPKIKEHLEIWNPLQNPSYGLEVAKRWKKLLEGDKPNSFTLSTGPSLDPNSMDTYERLIWEVWMPVFRRCASVWNPQFCDGLVELLENWLPLLPSWIYDNILDQILLPRLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWJ1</accession>
    <name>A0A6S7IWJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioredoxin domain-containing 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048934</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011799">
        <property type="protein sequence ID" value="CAB4022093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWJ1"/>
    <dbReference type="OrthoDB" id="291007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045335">
        <property type="term" value="C:phagocytic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098636">
        <property type="term" value="C:protein complex involved in cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046871">
        <property type="term" value="F:N-acetylgalactosamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030247">
        <property type="term" value="F:polysaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2080">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052487">
        <property type="entry name" value="Galactose-binding_lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037221">
        <property type="entry name" value="H-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019019">
        <property type="entry name" value="H-type_lectin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46938">
        <property type="entry name" value="DISCOIDIN-1 SUBUNIT A-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09458">
        <property type="entry name" value="H_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141086">
        <property type="entry name" value="Agglutinin HPA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="H-type lectin" evidence="1">
        <location>
            <begin position="89"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17434" checksum="E069F3D6E0DD6611" modified="2020-12-02" version="1">MKLLLVCLSAMFSLAFAAVLQQDVEFKRTAEDASMNRFETVDLTSSDEDEEKRIFLPSNLCGDTCKSGYVQSKYCTTAAKICFGRGQIVNVRFVPAFKDIPKVVIGLTLVDTHKDHNVRVHATVESVTRTGFNIRFKPWDTSITYRIGVNWMACP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXY5</accession>
    <name>A0A6S7IXY5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Receptor for retinol uptake STRA6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A076913</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006748">
        <property type="protein sequence ID" value="CAB4010321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXY5"/>
    <dbReference type="OrthoDB" id="5985994at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016918">
        <property type="term" value="F:retinal binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019841">
        <property type="term" value="F:retinol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034632">
        <property type="term" value="F:retinol transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071939">
        <property type="term" value="P:vitamin A import into cell"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026612">
        <property type="entry name" value="STRA6-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21444">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 180"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21444:SF16">
        <property type="entry name" value="RECEPTOR FOR RETINOL UPTAKE STRA6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14752">
        <property type="entry name" value="RBP_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0683">Retinol-binding</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0845">Vitamin A</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4010321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="36284" checksum="787A9570CDB92A50" modified="2020-12-02" version="1">MSDVTYTTEPPIGVECDLNTTYYPHLLLLPAGIIITILSFLQRRSSFKKEVFGGRPGLVVPIDFLGMDHDRLTIMSVFGAATASIMLLIFKSISGYSNAWGKAFLIIGTCIEIAFLYYPYFGCLTSHHRIIGALMGLPYAVVCFMLYLTGSFQKCNNYVTSEYVMSALVELPSILCNLFIMGKFILVLYKEIKKNGTFKVKFFFHNDDQSEGQVKLVRPWLKHYVKDLMKLKPLRRYSTIEFYLRKIYSPEKNFKFSTQTLSVVMICSILLYAISLMGVFYASLALNIVSKAADNTADNTADNTADNTVDSFLIKVLRGFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J100</accession>
    <name>A0A6S7J100_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048901</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005720">
        <property type="protein sequence ID" value="CAB4007178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J100"/>
    <dbReference type="OrthoDB" id="10499892at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14642" checksum="A24B28921DAE1B39" modified="2020-12-02" version="1">MMLKVLVLVVAYSIFADARRLDRFLWDDDSDDTTKRSYQQQVCKDVIVEERVSTSTLINNDQLSYPHLFPQNILKISCKTEGKQASGVSDSSIICKTKEKQINVVEFNDQGVGIAVHNAKVPTDCVAYKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J253</accession>
    <name>A0A6S7J253_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069316</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012823">
        <property type="protein sequence ID" value="CAB4024074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J253"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="422" mass="48072" checksum="B1A7D00CBCF36663" modified="2020-12-02" version="1">MKKITVYVESGGITLDLQDPLILTHGSELYVKTAAVFWNYWNIRKGFNDYISVDGKKIMIDEGYWTFKQPKKELEENGLTLEEYPDGRIRINFAKGTNSAGLRNLTSILGYRSSDGPTYTPHISDRPVDIHEGLRYLTVSCNLVNREHNIGPYGNRSTVMTSLAIDGTRPLSGTTTKYNNIESQVRVDAAACYVAMFKSGISEDHLTNNFPNSHSNIVTSIVRFHLHFHLSRFMRNPNLLDQYLTSDDKWTIRKYTPVRETWVRRTASSHANIGTWYYGLTVSEQKKIRRQKYHLTKYGGSFIEYEYLTAEDLNTLKRKLITVEKAQQRNTAEVAKHTNDIIKLNSLGENTVQYDFSQIPGYPPGFLQTPTITDTDKKNTKFMVFSVSGNPLCTDSTKRIGGRLSYLQLTRGVKLSGHPIHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7T6</accession>
    <name>A0A6S7J7T6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013713</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013975">
        <property type="protein sequence ID" value="CAB4026044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7T6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="24"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="62"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4026044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="27713" checksum="911E4C2063F924B4" modified="2020-12-02" version="1">MATAVSVLLGKLYARPVKNSWKRISWWFLAHNVVTLAIPLYGYELAQAVSGRAYHSKHLPQFICYLIFTVTIWLAPTVVGELIKGRERKFMERINDISPWSLETESHSLGEVHSVRSGTQSQGEQEIDSLGDTVSDSEPLLSSKNNDLNLTLNPRQTASQYSIGSTSMEGSDIAPTLSEYTFASRGKELRNFLRFLKRRTPGLVSRGYSLQLNLSLISLLGGAISFLIKLNSMNSEDIVYRNCNCTMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8F3</accession>
    <name>A0A6S7J8F3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075912</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014116">
        <property type="protein sequence ID" value="CAB4026284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8F3"/>
    <dbReference type="OrthoDB" id="5978732at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="23886" checksum="DADC3C5031CB9245" modified="2020-12-02" version="1">MTETLVSLPCISRRSQTQSSEYRSTDRPNTQTRDALSRPSTLGSNETRADENRRECLTSLSALYRSSYKPYQFTHMYGTHYNKNFQGRFARPPQPERQPTARYAPINYSSLKTTYQQEFRDKEPIAKPLILPCSRHRMNKPHPNLTNTWKYPNSFRWIWSGKRPEQSSLGTVEEDEIENRKTKSAGIFTGKTRDIRMHRWCSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBL4</accession>
    <name>A0A6S7JBL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008326">
        <property type="protein sequence ID" value="CAB4014492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBL4"/>
    <dbReference type="OrthoDB" id="5988231at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="20190" checksum="17C0D8F5DC34A53E" modified="2020-12-02" version="1">MRCNRTSDKIGCFKRSLPFMGVKLFDILVMTDRDWTAPQYGGQDIDWFNWADYIHGFRCRCYERLKQLAKDNDKKYHHFSISNYGECWTSEDIIYDLAKLGLDDTCVGDDFLSCRLETESECFGAANSQFVYHVHYEHEPHVDEFEILNSECTIETLTVCISPSTSYASSTVQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEQ5</accession>
    <name>A0A6S7JEQ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ribonuclease P subunit p21-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A037152</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="8">Belongs to the eukaryotic/archaeal RNase P protein component 4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008687">
        <property type="protein sequence ID" value="CAB4015372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEQ5"/>
    <dbReference type="OrthoDB" id="128536at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005655">
        <property type="term" value="C:nucleolar ribonuclease P complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001682">
        <property type="term" value="P:tRNA 5'-leader removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00757">
        <property type="entry name" value="RNase_P_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016432">
        <property type="entry name" value="RNP4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007175">
        <property type="entry name" value="Rpr2/Snm1/Rpp21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14742:SF0">
        <property type="entry name" value="RIBONUCLEASE P PROTEIN SUBUNIT P21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14742">
        <property type="entry name" value="RIBONUCLEASE P SUBUNIT P21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04032">
        <property type="entry name" value="Rpr2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00038402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4015372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="18165" checksum="81952A097FCC2CC9" modified="2020-12-02" version="1">MGNKRKIKERREEKSLANREAYTRMNFLYQASQTVLMENPVNLELSRFYAFTMKSIGQKLLCKMDPSIKRTICKYCHSILVPGLTSTIRVKAKRERHLVVTCLDCGTLKRFNTCKNYQLWSEQQQAEMKQQPEGQYSGQEQKTQQNKNPGLKHRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFE2</accession>
    <name>A0A6S7JFE2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DDE Tnp4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A040270</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008767">
        <property type="protein sequence ID" value="CAB4015571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFE2"/>
    <dbReference type="OrthoDB" id="2668416at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE Tnp4" evidence="8">
        <location>
            <begin position="130"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4015571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="332" mass="38425" checksum="FE42878AFAB08A0D" modified="2020-12-02" version="1">MDKQFKKRFRVNRNTFNYLLQELQESIKRETTRFKVPVAPEIQLALTLYRLAHGCSFSTVGDLFGIATSTTCKTFNEVIRVIVLIFFDEYVTLSSTEEEWKNELKAFLKDWGFPWVAAWDGFHVYICSNLKNFYSFKKRYSVTNMGLIAANKRFLWAGVGAPGSMHDSTLLKSSPIFNEIESGHVLPNCEMNLPGCGNIPLGMVGDSAFPACSWLMKAFDDTTKNRKERNFNKHLRAARVVSEHAYAMLKGRWRIIYKKTECRRRNVTAIIMACITLHNICIKRADPCLPRWQLEIQKLELICKPTKRSEDKALSNKVRDIIKEWLWSLKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFY6</accession>
    <name>A0A6S7JFY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030800</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008812">
        <property type="protein sequence ID" value="CAB4015702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFY6"/>
    <dbReference type="OrthoDB" id="5983182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.100.10">
        <property type="entry name" value="Mannose-Binding Protein A, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001304">
        <property type="entry name" value="C-type_lectin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016186">
        <property type="entry name" value="C-type_lectin-like/link_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050111">
        <property type="entry name" value="C-type_lectin/snaclec_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018378">
        <property type="entry name" value="C-type_lectin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22803">
        <property type="entry name" value="MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00059">
        <property type="entry name" value="Lectin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00034">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="C-type lectin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00615">
        <property type="entry name" value="C_TYPE_LECTIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50041">
        <property type="entry name" value="C_TYPE_LECTIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14721" checksum="2B42E6B5F8B0E692" modified="2020-12-02" version="1" fragment="single">PIWFAFNQSYFLFVATPIPQKEARKVCLEKKGDLASISSEEEQAFLFKTFMETNSASGDKVWVGLNDIAEEGVYVWTDGSPNTDVRFKAGEPNNYGNKEDCIAIIKIYGGNLGDFSCDNSCAFICETNYESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGD5</accession>
    <name>A0A6S7JGD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036194</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016645">
        <property type="protein sequence ID" value="CAB4030127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGD5"/>
    <dbReference type="OrthoDB" id="412006at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="463" mass="52449" checksum="A89E4727DCCCBF75" modified="2020-12-02" version="1">MSKSLYSNPKRFWSFFKTTTKSCRIPQQVSSANGTNSLRTSSSNAQETANLFNYYFNSVFLKESDENYNPVPPVSNESITEIILEQCEVRNALNSLNPNKAFGPDNIPTRLLKECASSIAPSLTYLFNKSLNSGNLPTEWKLSNIVPLHKKGNKSYVENYRPISLMCVVAKVLERCIYNRLVDHIQKMLSDEQHGFLRGKSCVGQLLSVLDRIGKNLDMGLQTDILYLDIAKAFDTVDHKLLLQKLFHFGVADKVLNWFSNYLSERQQRVLVHGATSDSLPVMSGVPQGSILGPLLFLIYVNDLPSSVSSPSVNVSLFADDTKCFSTIESLSDARNLNTEFKNVQNWAHSWRLNFNAEKCKVLSITRKCYPIVAEYVIDARALQHRIESVQHRATRWIIMSRRGELSYKERLLALDLLPLTFDREVKDLVYLYKALFGYVNVDVSNCVSFVSHGPTRLSNTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JH85</accession>
    <name>A0A6S7JH85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ras GTPase-activating IQGAP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063464</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008967">
        <property type="protein sequence ID" value="CAB4016092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JH85"/>
    <dbReference type="OrthoDB" id="775356at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903479">
        <property type="term" value="P:mitotic actomyosin contractile ring assembly actin filament organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00201">
        <property type="entry name" value="WW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001202">
        <property type="entry name" value="WW_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036020">
        <property type="entry name" value="WW_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14149:SF14">
        <property type="entry name" value="CALPONIN-HOMOLOGY (CH) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14149">
        <property type="entry name" value="RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00015">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00456">
        <property type="entry name" value="WW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51045">
        <property type="entry name" value="WW domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01159">
        <property type="entry name" value="WW_DOMAIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50020">
        <property type="entry name" value="WW_DOMAIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="537" mass="61429" checksum="EFE5F037CB45952F" modified="2020-12-02" version="1">MSAQVDHIHSSHLITAVQAINRTIEEDNPAATLTSLQQDPAKLKNILPENALLYQALLYAEKQEKKKKTDDPSAELWHDEIQRIIDKCNLYAIDAHKLAAGVSMINASLESGTEQSTIEALENADVGLRGVTRECQAAYHTRLKETKGEKGQQAGPWLEQKIPQGFLFYYNTATQQTSWAKPADFTNNSGLLTKEEIQTMVSNETAKHGRQVYLQANEPSIVRLQAHWRGYLARKTFNERKQFMTKQLPAIIKIQANLKRWIQHKKYNDRLEVLHDNDDAIIKIQAWTRMHLARSNYKQRKQLYEDNLPAIVKIQAFMRANLAQHDYRALLNSQDPPIKIVRKFLHLLDQSNVDFEEELELQKLKAQVVTEIRSNQQLEHDLQGMDIKIGFIRYGLKEKQRISLLATGKTDTLAKLALWQTGALSKLALWQNWRSGKTGALAKLANWRSGKTAGALAKLALWRSGETGTLAKLALWRNWHSGETGTLAKLALWQNWRSGKLALWQNCRRSGKLALWQMDKKPKTYIILAYGIQSRYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JL69</accession>
    <name>A0A6S7JL69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038924</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019065">
        <property type="protein sequence ID" value="CAB4033235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JL69"/>
    <dbReference type="OrthoDB" id="5987689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="18939" checksum="6987209B12F94282" modified="2020-12-02" version="1" fragment="single">KAFDRIDHNILVPKLLALGVRLSLIPWICSFLSNRRQSVKIENFQSDWGINNAGVPQGTKLGPILFIIMINDLELASSSTDHWKYVDDVTISESLKKNEVSVLQSDLNTIERWTVNNNMKLNGKKCKEMILSFVRSENDIPRLLIDGLPLDLVPSFKILGLTINHEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JMR1</accession>
    <name>A0A6S7JMR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A037633</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016821">
        <property type="protein sequence ID" value="CAB4030380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JMR1"/>
    <dbReference type="OrthoDB" id="301415at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04515">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4030380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="214" mass="24263" checksum="D8164B5221466695" modified="2020-12-02" version="1" fragment="single">RPKTKRTRGQPELASCSYQSPRARSLEVRPQVRKNLNAGCPKSLSVTQMINLGKVVWSRGFTSAFYVHLFNTDVCDMYYRPPLKREYGGEYDSYMAKLEGGEYVTIEEFIDGDFTKYLNNTGLVCGNRSTDECKKAECLAHYSYEKSSGKLMLLDIQGSMYTLFDPEIASATLLIDAEYLFGVGNLTSEAITAFIENHECNRFCVIFLLKRQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPL4</accession>
    <name>A0A6S7JPL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">2OG-Fe(II) oxygenase, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070311</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018097">
        <property type="protein sequence ID" value="CAB4032064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPL4"/>
    <dbReference type="OrthoDB" id="5971311at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.620">
        <property type="entry name" value="q2cbj1_9rhob like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044862">
        <property type="entry name" value="Pro_4_hyd_alph_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33099">
        <property type="entry name" value="FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33099:SF14">
        <property type="entry name" value="PROLYL 4-HYDROXYLASE ALPHA SUBUNIT FE(2+) 2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13640">
        <property type="entry name" value="2OG-FeII_Oxy_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="506" mass="58563" checksum="1EAFE8DD81A06A4A" modified="2020-12-02" version="1">MAQVFAKRNPRGQSNQSPHIYDLSVQNSLRDRPIGYVVNSHQILYHGWYRFTEDVKNYEPLIDSLEHAFSNSVFCCGGYVRTPDDNLEDFILKVKPKAGSEDEENWKKFSLNKILPEDLMEYCNPSPFGDLKEMKTILDPEVRLAHEIETDRFDFGYVSRRHTDRFVQSKVLPGNFSIDYHIADELVPGRHIDLKRNKLNIYGKGGFFKSHVDTPSHDNMIGTLVVCLPSPHKGGELIVSHDGLEHVFDFSKLSDDPSVFQWAAFYGDCVHEVRPVVEGFRVTITYGITLSDRRNLKEGYCDRRQTPVEEHFEMSAKCELHSFAKVDRALANLPEKLGSKAPDYIGFILKHKYTLPGLQPNMLKGEDKDLLDYLTDKGWKCQLKTILSRFMTTMVSIDIGEMDIEETHEIYEFKPHEGIPPDYEWYYPSLPEWSDRFSGRQNPLRNFREWRVGIPFIEIYRKPDDGKLVRNNEGKSRWVGNEVHDVDVDKIYLDSALIVQLGNKTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTD7</accession>
    <name>A0A6S7JTD7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcription factor isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A052425</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007931">
        <property type="protein sequence ID" value="CAB4013568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTD7"/>
    <dbReference type="OrthoDB" id="5990467at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004826">
        <property type="entry name" value="bZIP_Maf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008917">
        <property type="entry name" value="TF_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024874">
        <property type="entry name" value="Transcription_factor_Maf_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10129:SF48">
        <property type="entry name" value="MAF-S, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10129">
        <property type="entry name" value="TRANSCRIPTION FACTOR MAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03131">
        <property type="entry name" value="bZIP_Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47454">
        <property type="entry name" value="A DNA-binding domain in eukaryotic transcription factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="341"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4013568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="408" mass="46097" checksum="8A8839008B22A44E" modified="2020-12-02" version="1">MEEAQSSNYNSIENKLGFNISQLNGQSFHAVESGYSLNLEDEMNNNNGTKKTPFPNLTSTWLNEFTSVGNSSQFGFIDSEIIIDASEGFPDKTGSEGLANGLSISHLNIENRNDFTGSQEDDTNNGQLIGNDFVFSKAKHFDLVREGVCKISPKNRNSSETLTKSDEIDGFVKAFDEPLDENILQMCKDRPVESAYFEMRKLKHSGLVSNDERENVNCIQTDPKPKRENTNYTVGVGEFSTTNLVSSKKIIQLSSLTGRDGYRTARTRKRRSETRFLTNFVDFSPVPSPEAEVPSLSPTTTNKYIQDDELITIDTKELNRRVKSLPKTTIQAIKHRRRTLKNRGYARSCREKKNTETSTLQRSKGDLEKEFASTSFDLQLAKLERNDWKSKYEHLASALQQRGAHVQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K488</accession>
    <name>A0A6S7K488_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026485">
        <property type="protein sequence ID" value="CAB4040225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K488"/>
    <dbReference type="OrthoDB" id="6146512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="16083" checksum="485E1885B4EFED42" modified="2020-12-02" version="1">MDNWTEDQRRQFNEDWANDDGLCELEQLPEPSENQIGKGSEDVPSKRQRSEEYFSIKSVKQVNVRKFKTTGTDYNVQFNPLDVHGVPNVMWTLNSAFQHLFDRLTSDMAPRDQVRLILNSHQLHKSISLPCLSYNEIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K5B7</accession>
    <name>A0A6S7K5B7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">WD repeat domain phosphoinositide-interacting 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A033762</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the WD repeat PROPPIN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012269">
        <property type="protein sequence ID" value="CAB4023011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K5B7"/>
    <dbReference type="OrthoDB" id="1667587at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006914">
        <property type="term" value="P:autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:002182">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048720">
        <property type="entry name" value="PROPPIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11227">
        <property type="entry name" value="WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21032">
        <property type="entry name" value="PROPPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0072">Autophagy</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4023011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="37523" checksum="A16D6E510DB796BD" modified="2020-12-02" version="1">MEKVVSISFNQDHGCFASAMQNGFKIYNTEPLSQKLSKELDGGVSQVEMLHRSNLVAIIGNGMGTYSNNKVFIWDDKLGKFVLEFKFNIPVFRVRLRKDMIFFVLRTRIYVCSFPNDPKKILYFETRENPKGLCQVCPNHEKSLIVFPAKKCGAIEISDLSAVQPGVSSSPVTISAHQGEIACLAFNQQGTMVATASDKGTLIRVFDTQSKQLVVELRRGADHATLYCINFSHDSSYLCASSDKGTVHIFALKDTSLNKRSTLSKMSFLGQYVESQWALANFTVPSECPCICAFGPGNSVIAICVDGTFHKYIFTPDGSCNREAYDVFLEVTREDDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGP6</accession>
    <name>A0A6S7KGP6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cilia- and flagella-associated protein 69 ARM repeats domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089400</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029297">
        <property type="protein sequence ID" value="CAB4042004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGP6"/>
    <dbReference type="OrthoDB" id="191673at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097730">
        <property type="term" value="C:non-motile cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097225">
        <property type="term" value="C:sperm midpiece"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902093">
        <property type="term" value="P:positive regulation of flagellated sperm motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048732">
        <property type="entry name" value="CFA69"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048733">
        <property type="entry name" value="CFA69_ARM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14716">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14716:SF0">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21049">
        <property type="entry name" value="CFA69_ARM_rpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cilia- and flagella-associated protein 69 ARM repeats" evidence="1">
        <location>
            <begin position="7"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20346" checksum="1404F0F92A3CB93E" modified="2020-12-02" version="1" fragment="single">MVVACLVKSRHYLAQYLKFEQYHEDFEFKKLLISAMVAMSKDPTAIQIMSSARLLLSLFSYVKANDTLLPDLWTPSQFEELQLQCLSALCTIAPLCINDYMTCQGNNRLLLLLDWCIGQGDYGGHGNSYHADGGRGNKRAQMRHCLRLLRSMCSTEDEAVLQDLCDQGAISQITGTWLGGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KHG3</accession>
    <name>A0A6S7KHG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">3-hydroxyanthranilate 3,4-dioxygenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A086361</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014938">
        <property type="protein sequence ID" value="CAB4027653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KHG3"/>
    <dbReference type="OrthoDB" id="204928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000334">
        <property type="term" value="F:3-hydroxyanthranilate 3,4-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034354">
        <property type="term" value="P:'de novo' NAD+ biosynthetic process from L-tryptophan"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046874">
        <property type="term" value="P:quinolinate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06123">
        <property type="entry name" value="cupin_HAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010329">
        <property type="entry name" value="3hydroanth_dOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15497">
        <property type="entry name" value="3-HYDROXYANTHRANILATE 3,4-DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15497:SF1">
        <property type="entry name" value="3-HYDROXYANTHRANILATE 3,4-DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06052">
        <property type="entry name" value="3-HAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="RmlC-like cupins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4027653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="25807" checksum="AC7D8892869BE2C2" modified="2020-12-02" version="1">MVKGDMCLRVMEQGKPKDIIIREGEVFMLPCHIPHSPQRSENTVGLVIEREREEGEQDCLRYYCEDNTTILFEKWFHCTDLGKDLVPIVKSFFTSEQHKTGKPIPGTITDKPPFQLDTTTKLHDPFSLRKWVEDNKSEIKEKGCKVLFETGQTKITVHGPGDYFTDGDSETWLWQINGNSNFTCNGVDTKLVNSDVILVPSGTKYSCKIESDAQIVSVVMDPKMKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KNY6</accession>
    <name>A0A6S7KNY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA excision repair ERCC-6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A088494</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011866">
        <property type="protein sequence ID" value="CAB4022218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KNY6"/>
    <dbReference type="OrthoDB" id="5968002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008094">
        <property type="term" value="F:ATP-dependent activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006283">
        <property type="term" value="P:transcription-coupled nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18000">
        <property type="entry name" value="DEXHc_ERCC6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10810:FF:000019">
        <property type="entry name" value="DNA excision repair protein ERCC-6-like 2 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="entry name" value="Tandem AAA-ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050496">
        <property type="entry name" value="SNF2_RAD54_helicase_repair"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45629:SF7">
        <property type="entry name" value="DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45629">
        <property type="entry name" value="SNF2/RAD54 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4022218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="655" mass="73789" checksum="E50DBE44194FC130" modified="2020-12-02" version="1" fragment="single">MALEVDGYILDTIKRLLVKLKPNAVILKYLYQRHGMSFSVRSLQRIMKTNGLKRHDNTVSPQQIAYALQKEVNGCRGRSGYRKMTLRIRIKYGLLKTSELEHQDAIIPRVLTGNKYGESTEFKRNNLKVTRKFAKTPQNNRKDCGRERKAGDQRLFIDVVVPHLSVLNFDIEALKQNDFKNISAIIIPTESLIYSRPNRHLFVCYVTSYVQSQRRLNKIPRATQQNREKYCSKQTKLKVHILHVQEFKLKKSLREKGIEYEGQVDEEDEFWNEEGLDEEFNGGLKIPAVIWNKLFRYQKTGVKWLWELHTQQAGGIVGDEMGLGKTIQIIAFLVGLKYSKIGRRASKQNCLGPVLIICPATVLFQWVAELHKWWPEFRVAVLHDTGSYKGSKDTLITKIRNEPGILLTTYSGVRLNQDHLLQSRWDYIILDEGHIIRNPDAEVTLTCKQFRTPHRLVLSGSPMQNNLRELWSLFDFVYPGKLGTLPVFMQEFSVPITMGGYSNATPVQVRMQDHLGKVISVVVVVVVVVVVVLIVILVVVVLVVVVLVVVVVIVVVVLVVIVLIVVVVVIVLIVVVVVIVLIVVVVVVVIVLVVVIVLVVVIVLVVVIVLVVVVVVVVVLVVVVVVVIVVVVVVVVVVVVVVVVVVVVVVVVVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KWY0</accession>
    <name>A0A6S7KWY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039212</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040626">
        <property type="protein sequence ID" value="CAB4045611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KWY0"/>
    <dbReference type="OrthoDB" id="10066052at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="15090" checksum="C7158134512455ED" modified="2020-12-02" version="1">MPKPNFVVKELRFRQLKRIDIPVSKNDISGSELCVNSFSDIEEFTRCYDTILLNLLDKHAPIKTKKMVMRPVVSWFTDDLKKLKAERRKCERKMLQSGCSHDKELYYKTRDKYSALLRKTKTSYYSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L6D8</accession>
    <name>A0A6S7L6D8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019321</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019414">
        <property type="protein sequence ID" value="CAB4033632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L6D8"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF19">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="184"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="265"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="190"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="281"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="34879" checksum="907D6DB9FD7BA20F" modified="2020-12-02" version="1" fragment="single">MADEAPEPIRNIGKVRKFVVGTDFEAYAEQLEFFFVANSVTDAKQKKAVLLTNMPAETYQLTKDLFAPHLLKEDTITYEAIVERLQKQLKPQKSALVARYEFDNRARNAGETVSEYVAVLKHLATECKFNETMRLERLRDRLVSGIRDRKMMSELLKLKLEELTFDTAVAKCIAIEQSCKDVETMQGGRDSNHTNKESDSVNLLNKPEEQNRNAKAKKGRDASPSPADPKCYRCHGDHQHKSCPFKNAICHYCKKSGHIRRACRKRSKETHSFKPPVNHIDDDDDSDSDDYLASLEINKVGNKDNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L7L6</accession>
    <name>A0A6S7L7L6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Inhibitor of growth protein 3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A025519</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ING family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015499">
        <property type="protein sequence ID" value="CAB4028459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L7L6"/>
    <dbReference type="OrthoDB" id="5411773at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035267">
        <property type="term" value="C:NuA4 histone acetyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd15585">
        <property type="entry name" value="PHD_ING3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000103">
        <property type="entry name" value="Inhibitor of growth protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042020">
        <property type="entry name" value="ING3_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028651">
        <property type="entry name" value="ING_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10333">
        <property type="entry name" value="INHIBITOR OF GROWTH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10333:SF103">
        <property type="entry name" value="INHIBITOR OF GROWTH PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00628">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="4" id="KW-0341">Growth regulation</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0804">Transcription</keyword>
    <keyword evidence="9" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="6" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4028459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="17195" checksum="BB1F5E39E04915BD" modified="2020-12-02" version="1">MSTSLTVAPQLGNPYANSVAGMSVNSVAGMSVNYVPTSSTMASMSHLDLNPMANTPSSKQHARKKQKTSAAAGTPVSTVDQVPLQTEVISQAVDWVYDPNEPRYCLCNQVSYGEMVGCDNPNCRIEWFHYGCVGITDPPKGKWFCPNCTVLMSKKKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LAD8</accession>
    <name>A0A6S7LAD8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079557</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021359">
        <property type="protein sequence ID" value="CAB4035773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LAD8"/>
    <dbReference type="OrthoDB" id="5985679at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47272">
        <property type="entry name" value="DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47272:SF1">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 3-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="431" mass="50337" checksum="8A125AE381A2896F" modified="2020-12-02" version="1">MYFKMGLVEMPSIRMYWEKETRYPPVTEVMSRNRFQLLLSLIHFVDNETVSEETKKDRLWKIRPFLDMFRARCLQTTPAEHQSIDEMMVPYKGKFGNIRQYVRGKPHPWGFKVWARCSVHGILHDFDVYQGKGGDKGANVFGIGGDVVVKLCKTLPKDVGHKIYADNFFTSVELIEKLSEDGFLYAGTVRKNRLAKCNVLEENALKKKGRGSHDFRVESKTNTVCVRWQDSKAVTLMSNYAGPEPMDKARRWDKSKKDYTNVDRPYIIREYNTHMGGVDMLDAHISRCKYSIRTRRWYLILFWHFTSIGVINAWLLYKRDCSLLGITGKSVMKLRQFQSKVAQALIERGTTRKSGRPSLGEETSPKPPKIIRVEPCEDARFDQIAHWPVKRDKRRRCAVCKTIKTDTCCERCDVPLCFNERRNCYKLYHIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LN92</accession>
    <name>A0A6S7LN92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053682</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024916">
        <property type="protein sequence ID" value="CAB4039072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LN92"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11311" checksum="3CFE5B62CD1C9BA7" modified="2020-12-02" version="1" fragment="single">VANRRLRKSSAYRQCQNKLLQDEINAKHARIRILSAQATTTHANLASLVSTLDFIHLKNISDRENSKKLNQHQRVQDRKLFRLNAEQKHSNTIDPNAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQL7</accession>
    <name>A0A6S7LQL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107336737</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027559">
        <property type="protein sequence ID" value="CAB4040972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQL7"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048270">
        <property type="entry name" value="PNMA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14893">
        <property type="entry name" value="PNMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="242"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="267"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="32998" checksum="77EA702A6130B6DD" modified="2020-12-02" version="1" fragment="single">MAGLDFSGIQQFDPHSEPSSLASQGKEWLQRFKRCIVAFDIKDKARKRALLLYLAGPKVETIFATLSDTGEENDFDKAIEKLTEYFAPKKNILYERHIFRQVSQRSDETIDQFCTRLRHRASTCEFDNVEDEIKTQIVENCRSSRLRRKAFRDDPKLDDLIKYARALEISDHHAEEMEKQHRQEAVYQNTRRDFPSRDIKGKQAQTCYNCGGTYPHQGRPCPAAGKTCHNCSNTGHFARVCKSEQKPISRKPRMPQDQYKSKANKLNALNQNRQQQPLSTEPTVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH79</accession>
    <name>A0A7D9DH79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055962</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000881">
        <property type="protein sequence ID" value="CAB3985513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH79"/>
    <dbReference type="OrthoDB" id="5982971at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31912">
        <property type="entry name" value="IP13529P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31912:SF34">
        <property type="entry name" value="NOTOCHORD-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="932" mass="108511" checksum="8EF8F3ACBA5A7C46" modified="2020-12-02" version="1">MRLKEIEWEICSISKWRFQPPAASHMSGVWERLIRRVKRSMKAEKGCVPQTVVNSFVNNATQIAQTSVDLLRSGVTNCLQKAGIYINTIPGLNDLFEQDNPISNPFKGIDKEPLQYKYYKEEFSLVEPQKIILGRYFVKKRKGNKLKDFEKTDDAFYIPILESLQQLLNDESILYEVENSHGRNDDFLCDLCDGKQRSNRPAASGLFDEVEVCNPLGSRANKHKLAAFYYTLGNIRPEYRSHINSIQLLGLVTSKHLKTYGVDSVLNVFMKDLHKLEQDGGYQFIIKGQPRYFAGIIAYVSGDNLGSQQLGGFKQGSQSHRKCRVCMGNATEICECFHEDGFVMQTKESYNEQCQRLNQGDHFQKTYGLNKISLLNNSRYYHVIGELTFDAMHDILEGVLQYVVKELLKVYILEKKYFTLEDLNRRVAAFDFGYHNDTNKPMPIQPQKLTSQDNSLKQHANQMWCLGLHLPFLIGDYVPEDDEHWELLCILLQTVRIIFTPVLSKHQVAYLQVLIQKLLENFKELFPECSIIPKMHYMVHMPRTMLELGPLVRSWCMRYEAKHHYFKRLAISLGNFINLPFSLSKRHQEGVSYRLQSGEGGCSSFLDKGIEVGPGKTSYIGDVDYSDLLNDEVPEINRQTSLYEAKWISVHGTKYKCGAIVHIGFDEDEFPQFWEIKEISIIDNNVAKAMFIVTRKETLRFSEHYQAYEIIAMPRQKNTRVFYSKDFTCHLPLHQIKPFRCQANYKYLTQHVRIKEDYYRTKVVTMKHSTVALLLFVLVLIQCTFVESWWFRRRRRTSSSHCRYPTSRYGNYGARSEYFYGTTSLFKGRKRFFGNWKLSHSLIMFRGKIFEWGLGKPKTYKMNRNPGHCAISWTWGSKGSSKCYRSDAETWTRNYRRRYAQIELNREAIIFARDALLEVAERLRQQSTAGNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DI41</accession>
    <name>A0A7D9DI41_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Mutator-like transposase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013758</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000858">
        <property type="protein sequence ID" value="CAB3985330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DI41"/>
    <dbReference type="OrthoDB" id="10069847at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049012">
        <property type="entry name" value="Mutator_transp_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20700">
        <property type="entry name" value="Mutator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mutator-like transposase" evidence="1">
        <location>
            <begin position="16"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="16728" checksum="D06FB90AC861860D" modified="2020-12-02" version="1">MDTNRSMVYSGMEMGKAVVEQSQKARNKVFSLHRSDETDVAEIAVSYDGTWSKRGYTANIGVGFVISVKTGEVLDFQFELKLCSSECIVQQRRILVKILLSMPFGTVGDNEVDFDDENDYPLARFAHNDESNDTDDAPLAQFASRNQEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DL44</accession>
    <name>A0A7D9DL44_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024771</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001341">
        <property type="protein sequence ID" value="CAB3988551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DL44"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="91" mass="9927" checksum="B45279066CCAD91A" modified="2020-12-02" version="1" fragment="single">NSTNLSDFVVVDGWAGNFDRTGNSDEVDDSDGTGNFDRIEGLGKGDDLGEADDLNGAVENLSGERNGVMSDGSLDAWEFHSQHREESDRWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DRM3</accession>
    <name>A0A7D9DRM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001789">
        <property type="protein sequence ID" value="CAB3991104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DRM3"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11109" checksum="2C87DCE7AB2CBE01" modified="2020-12-02" version="1" fragment="single">RSGVITLIHKRGDRLDMKNWRPITLLCADYKIVAKAIANRLLGVIAKVIHSDQTCGVPGPNSLESVRLLKGVVFYANQNRKAAAIISLDQEKALDWVEWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DTD3</accession>
    <name>A0A7D9DTD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A014977</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the alpha-ketoglutarate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002034">
        <property type="protein sequence ID" value="CAB3992370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DTD3"/>
    <dbReference type="OrthoDB" id="413077at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016624">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11610">
        <property type="entry name" value="Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011603">
        <property type="entry name" value="2oxoglutarate_DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042179">
        <property type="entry name" value="KGD_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031717">
        <property type="entry name" value="ODO-1/KGD_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152:SF4">
        <property type="entry name" value="2-OXOADIPATE DEHYDROGENASE COMPLEX COMPONENT E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152">
        <property type="entry name" value="2-OXOGLUTARATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16870">
        <property type="entry name" value="OxoGdeHyase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="2-oxoglutarate dehydrogenase E1 component/KDG C-terminal" evidence="6">
        <location>
            <begin position="308"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="27"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="50"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3992370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="448" mass="49260" checksum="E7691CC8CAB1432E" modified="2020-12-02" version="1" fragment="single">PPSSSGNSEGPPGSSDKSEASAGSSGNLESSPNISVSSQGPPPNVPKQPISPNTAINPISTIHQPSVPRPTTQSTQRINSSTTNQPIKASTTLPNQSGTPAYQPIPIFYLPQKPTIPEILGRSFKVSMVLPQQPFGDDLLRTNSLIFHQLKDALEQAIRNLYADNSHFMDVQVIEFRAINKGLVSRSNIPTTKMNKGYGELVTVIIIKLNFNQVMKGHLVLLSRQLDSGVLGSVVVRRTLFAARTDKDSCKSSCKKPNICFPSCTVVCCLPDDARQIVQRNAAGIVRNFRKPLIVASPKLLLRSPVAVSKLSEMAPGTHFHPILGDNHVDPSQVKRVVFCSGKYYYTLAKERENRNIQDTAIIRLEALTPFPAEDIKKEVQKYSNASEFIWCQEEHRNMGAWTFVNPRFDNLIGVKLRYVGRKILATPAVGMGKVHEQESAEILNSVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMS9</accession>
    <name>A0A7D9HMS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Adrenodoxin, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A023730</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the adrenodoxin/putidaredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000742">
        <property type="protein sequence ID" value="CAB3984464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HMS9"/>
    <dbReference type="OrthoDB" id="268593at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140647">
        <property type="term" value="P:P450-containing electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001055">
        <property type="entry name" value="Adrenodoxin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018298">
        <property type="entry name" value="Adrenodoxin_Fe-S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23426:SF65">
        <property type="entry name" value="FERREDOXIN-2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23426">
        <property type="entry name" value="FERREDOXIN/ADRENODOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00355">
        <property type="entry name" value="ADRENODOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="2Fe-2S ferredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00814">
        <property type="entry name" value="ADX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3984464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10650" checksum="95C9E34C1A3DD952" modified="2020-12-02" version="1">MYLAHRHNVEIEGACEASLACSTCHVYVKQEYFDILPEPEEGEEDMLDLAPFLQENSRLSCQIILTKEMDGIEVMLPKATRNFYVDGHIPQPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HN89</accession>
    <name>A0A7D9HN89_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Lipase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A085810</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the AB hydrolase superfamily. Lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001369">
        <property type="protein sequence ID" value="CAB3988722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HN89"/>
    <dbReference type="OrthoDB" id="9974421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1820:FF:000021">
        <property type="entry name" value="Lipase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006693">
        <property type="entry name" value="AB_hydrolase_lipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025483">
        <property type="entry name" value="Lipase_euk"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11005">
        <property type="entry name" value="LYSOSOMAL ACID LIPASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04083">
        <property type="entry name" value="Abhydro_lipase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000862">
        <property type="entry name" value="Steryl_ester_lip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 7" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Partial AB-hydrolase lipase" evidence="8">
        <location>
            <begin position="33"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3988722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="410" mass="46195" checksum="C237808B9D71E694" modified="2020-12-02" version="1">MAVSWFNSLLSLLLLALIVQLNNAEDPEVNMNVSQIISYWGYPCEDYSVVTSDGYILSVQRIPHGRNGRHKSNTVKPVVYLQHGLLGSATHFLLNLANSSLGFILADAGYDVWLGNSRGNIYSTRHKTLSPDSDAFWDFSWDEFAKYDIPATLNYILNYTQTSSLSYIGHSQGTTIAFAEFSRNQTWASKVDIFIALAPVAYVGNMVSPLKYLSYFTGEIELLFKILGVRDFNLPPKVQEWLAELACNPKLGEELCANVVFLLCGFDKAQMNETRMPVYTAHIPQGTSVKDIIKWAQGVRSKRFCMYDYGTSGNQKHYGQDTPPSYHLSSVNVPTALFYGGNDWLADVKDVNMIIAQHKHIVYKKEIVAWDHLDFIAGKDAPALIYGDILKLLAKHSRRSSNRLRNRIRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HX22</accession>
    <name>A0A7D9HX22_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">SREBP regulating gene protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A043026</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the SPRING family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001960">
        <property type="protein sequence ID" value="CAB3992000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HX22"/>
    <dbReference type="OrthoDB" id="70142at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000640">
        <property type="term" value="P:positive regulation of SREBP signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019352">
        <property type="entry name" value="SPRING1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13481">
        <property type="entry name" value="SREBP REGULATING GENE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13481:SF0">
        <property type="entry name" value="SREBP REGULATING GENE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10218">
        <property type="entry name" value="SPRING1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3992000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="21331" checksum="E938B2E5EB011BF5" modified="2020-12-02" version="1">MRLYYRWFLALLFVVCLIIFWRNYISNFETEESIENENQVAPTFKWIDQKALKRCRNSMQGSRIIADDRGYICEWSDRLSNGCCFPKGVTSKQYVCKSCLANQCCNVYEHCVSCCQHPDKQTLLRSILANNSRKILKMVGDQFEFCLAKCRTSSESVIHENHYRNSKHKHCFGTKKPETEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXW4</accession>
    <name>A0A7D9HXW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uveal autoantigen with coiled-coil domains and ankyrin repeats -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A020331</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002174">
        <property type="protein sequence ID" value="CAB3993055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXW4"/>
    <dbReference type="OrthoDB" id="449487at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17043">
        <property type="entry name" value="RA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000159">
        <property type="entry name" value="RA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001660">
        <property type="entry name" value="SAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12573">
        <property type="entry name" value="AT09986P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12573:SF4">
        <property type="entry name" value="AT09986P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00788">
        <property type="entry name" value="RA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00536">
        <property type="entry name" value="SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00314">
        <property type="entry name" value="RA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00454">
        <property type="entry name" value="SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50200">
        <property type="entry name" value="RA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50105">
        <property type="entry name" value="SAM_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="242"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="490"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="547"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="694"/>
            <end position="720"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="737"/>
            <end position="782"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="790"/>
            <end position="873"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="900"/>
            <end position="1064"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="34"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="44"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="63"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="259"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="290"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="303"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="335"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="496"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="511"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="566"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="694"/>
            <end position="709"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="746"/>
            <end position="773"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3993055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1152" mass="130007" checksum="478E7AD815E76346" modified="2020-12-02" version="1">MSSSTRLFDSNGHLLPPEQCNIEPLDSLTKHRAASPSRRSPSRNGRQSAGTSGSEPKLPNFVQEVTKNTESPNIRLASPTAIKAEYVNVEKRLISTKNSAKDGTHLANNHLGSTTASNFKASVLSKSKALGKMESGIVNEAAFALELMEKPVPTWTMEDVGIWLDDIGLSKFKEHFLIHKVSGKTLLNLSYETLEKLNLSESSEEREHFLSEVYRLQEESGQVDNEDEQMMDKEIEETLRDVSPQENNNEQTHVHVPVSTGSDLTPTDSFASSSRTESDIGPSPTSEITDNGKQKQDSPKKTVVQNKAETSTHTITSNQVSPTKTKSKKESSKPTSKKAKPRGKRISRLFNSKPGSHKDPSLLHTAPPIYKNAFHNLMNTGPQGVVKVWTEMFLTDMQYVSLLIKHEDTAFEVIKMVLEKSNAKEDPECYRICEINEHKKEYVLDRNECPLQRERQWSDPDNCRFELRWRNERLIEWGNSTGPIAQDLSKQKISEEPSSPQNHIEAQQDKTSSPSSSESTSGPDSPGTDDLAPNNTLETEFAYIVEVDHGKGSSTNTGKSEKDSDMLQNNSQNDLTSNIEDPDSIQNAPKRLVSSCPDLSQNDSVDDDPEYGNLMISKNFNFLNAESDLMGIDNGPTTNLDSSSDASTSVGEFEYSQQLRRSSKRLSDRLRFQGKPRIEGQAVEIGIDAEKQDDLSTLRDTNGDKRGETGDNVGISLDRTQSNNDLSIDVSKDIQQDLSASVPGDVSRESVEEPAAKQPGDEAALKETEDVTAPKEPGNEVSTPVVLPEVSEVLERINELQNENSLLIEDNRELKKQCRTFEGKSRLRERELEEMESEKNELANQVQEMATELHSLRAANTELRTEVDEANTKLSDVDGWVTRDVFEDIRGQLSLSAEECEKRDEEISEIQKKCKNLEVENKKMHDLAVEVEKLNERIKEDNKVLDEVKRDLKGKEKRILQLELETQKMENSLQEKENEKEEKENKLQEVEIEMEGSKKNHENEKKDLQKRLSDREYEILIMKEEKKELCIKMKGFENNVETLREELKTKDEEREAAIAEMEKQSAIKDESLSVMVSNLEECITERDLRIKQLKKQIALSGAPESELQAREHEYEQNKVYLKHLIALVKEKDPSILDVLNKSLSSRDSEDWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZT6</accession>
    <name>A0A7D9HZT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022472</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002434">
        <property type="protein sequence ID" value="CAB3994304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZT6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="14260" checksum="96F33B352BE77215" modified="2020-12-02" version="1">MQQRLNSDDNDELYFIAPVTQHVEREDENEGNQDLHPDFNEGYDLSDDLGIPSRQQVLQPVFDGYVFNDIQDSEYSILSPNLWKKYLRMYELKEIMRQRESKIFAEILNRLREGKHTDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZY6</accession>
    <name>A0A7D9HZY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A043573</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the dermatopontin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002575">
        <property type="protein sequence ID" value="CAB3994978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZY6"/>
    <dbReference type="OrthoDB" id="5975249at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030199">
        <property type="term" value="P:collagen fibril organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026645">
        <property type="entry name" value="Dermatopontin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15040:SF1">
        <property type="entry name" value="DERMATOPONTIN-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15040">
        <property type="entry name" value="DERMATOPONTIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14704">
        <property type="entry name" value="DERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3994978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="20187" checksum="D18E18AB330E4144" modified="2020-12-02" version="1">MTAVTALASLILLAQIMSINAAYTRPDATFTRQCPAGYGMSRMISYFSNHHKDRSWLFYCRRDYKITSICYWSGWLNWYNRELLYQCPTGVLAGIHSAHNNIYQDRRFRFRCCRTRRVCQYSCYWTGYVNTFKGSKNYGVPQGYFITGAKSHHVNSYQDRVWRFLICRFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8T6</accession>
    <name>A0A7D9I8T6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">Mediator of RNA polymerase II transcription subunit 1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Mediator complex subunit 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A078419</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the Mediator complex subunit 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004921">
        <property type="protein sequence ID" value="CAB4004492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8T6"/>
    <dbReference type="OrthoDB" id="2281547at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016592">
        <property type="term" value="C:mediator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051999">
        <property type="entry name" value="Mediator_complex_subunit_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019680">
        <property type="entry name" value="Mediator_Med1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12881">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12881:SF10">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10744">
        <property type="entry name" value="Med1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0010">Activator</keyword>
    <keyword evidence="7 9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 9" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4004492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16899" checksum="0342DF212D6F8E2F" modified="2020-12-02" version="1">MVFLAVHSFGPYNFHQEHNKFKGLLNGIHSRCKQCKSWSNSKHAVKAFVDRQQQVKHLMPIKTYIAECLDKIQGVIRENNLTDTIHRLELITRQVGLKFDVSTTYTECFISSDMFYVEVQLQDNGNILEVKVQHYGDLVPVLLLYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IP47</accession>
    <name>A0A7D9IP47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030567</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007485">
        <property type="protein sequence ID" value="CAB4012371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IP47"/>
    <dbReference type="OrthoDB" id="5946408at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF033679">
        <property type="entry name" value="DNRLRE_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="29044" checksum="D7D515A7A2707EA8" modified="2020-12-02" version="1">MTSSSFPEPLGLLREAGEVVGGKSNIFFKQDYPDKMHTIVQLFLISLACLAISAHIKKKSYTLKVTEDVCLERGSSNYNYLPYLLIGTHPGYPLKRSLLKFQNIPCECTFPLKATLHIYFVYAHKASFMSVAQVPAVKRYLVAYTVLKSWTESQATRTKRNKWARWDNQWLKLGTDAESLATSSTTVTPTPGRKWYTLDVTEQARDWKFGANYGLLLRDTHERVQGRDFRFASNAYQDRSKHAYVTLTCWVQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IT51</accession>
    <name>A0A7D9IT51_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Transcobalamin-like C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A070748</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007740">
        <property type="protein sequence ID" value="CAB4013070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IT51"/>
    <dbReference type="OrthoDB" id="5969136at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051588">
        <property type="entry name" value="Cobalamin_Transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027954">
        <property type="entry name" value="Transcobalamin-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10559:SF18">
        <property type="entry name" value="TRANSCOBALAMIN II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10559">
        <property type="entry name" value="TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14478">
        <property type="entry name" value="DUF4430"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5044320458" description="Transcobalamin-like C-terminal domain-containing protein" evidence="2">
        <location>
            <begin position="26"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="Transcobalamin-like C-terminal" evidence="3">
        <location>
            <begin position="82"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="Transcobalamin-like C-terminal" evidence="3">
        <location>
            <begin position="200"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="277"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="283"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4013070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="37690" checksum="BBD4BEE898A33B29" modified="2020-12-02" version="1">MCTTQFCQKMKFKVFIASFCLVVMAKSESAFQFRQERSLASEKNFTRGVNSTALISVSIKLRFTDFTNENVIPAVNITASNGTTAFQFLQQAAQQNPCYLSQYKTYPNLGHYITTICCVAENTTSNFYWFVYINNALSPVGVDGLIPNNGDILRFEYRFINSTDGKQDSMQMISVSVKLTFTNYPNPDVLPAEQVIAANGTTAFEFLQLASQLNPCYLFNYTQFSFGRYITTICCIEQNKATQFYWFIYLNGIPSPVGADLLKPKNGDTLTFEYQMSTNTDHSTSAPTPRSATPRRATPRSGTPIINPKPTGKGQQMPAASLNVFISMAIGILVWKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUQ6</accession>
    <name>A0A7D9IUQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008011">
        <property type="protein sequence ID" value="CAB4013757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUQ6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="25532" checksum="20BCAB1B8A14161D" modified="2020-12-02" version="1">MKSKRAKWEPGSGSHVCSKHFKVDAFDKILNLPGQENTYRQKLKKDDLGIASFPSIFCTDETEKQLSGRAARAIKCKYAAGNEPSSPQEPGCSSDCVEPEAEMDLAIEIPNINIERHEQPVHEEFTQTLQWLVRIAITLWNYKRGTEFFAIKSYVIICVCVDDLAYCDAVAELKKSLCPAAQREMLYALFESCDLRTGEDPGVYKWELENILAKADPELSSRFCHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWF8</accession>
    <name>A0A7D9IWF8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004699</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009108">
        <property type="protein sequence ID" value="CAB4016416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWF8"/>
    <dbReference type="OrthoDB" id="78720at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309">
        <property type="entry name" value="KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309:SF1">
        <property type="entry name" value="MYB_SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28881" checksum="5D72C6C6A5E406CC" modified="2020-12-02" version="1">MTSEGKNPETEVEVQGQINSAMEWNKRHDTMLFREVLVVNPYQAKKKTVQRGQLWQTVAGNLVRLEDPVFKKRLSKRSVQDRCTLFCEKHKKRMKYDTKASGDIAKSDGIGKFDRGNVGKTQKKKVEQDQRNAVDIRKKVMERFGETKKRKIDEGEIEEKKRKRRRSGSDTLQFIMEQSENEMNMRGRELALEKEKQTREEQRHNDFKEIMAQQMAQQQQQMAQFQIMFMQKNNLMLSMLEKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J078</accession>
    <name>A0A7D9J078_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Endothelin-converting enzyme-like 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A038721</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011110">
        <property type="protein sequence ID" value="CAB4020758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J078"/>
    <dbReference type="OrthoDB" id="6475849at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016485">
        <property type="term" value="P:protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd08662">
        <property type="entry name" value="M13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000718">
        <property type="entry name" value="Peptidase_M13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018497">
        <property type="entry name" value="Peptidase_M13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008753">
        <property type="entry name" value="Peptidase_M13_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11733:SF167">
        <property type="entry name" value="FI17812P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11733">
        <property type="entry name" value="ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01431">
        <property type="entry name" value="Peptidase_M13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05649">
        <property type="entry name" value="Peptidase_M13_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00786">
        <property type="entry name" value="NEPRILYSIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51885">
        <property type="entry name" value="NEPRILYSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4020758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="34793" checksum="87A711E01F48E8DD" modified="2020-12-02" version="1" fragment="single">MWNAIRELISTLPVAFRDAYDKYKKDYGVEHPIDRWETCCTLTNRAFEYATTLLYVNEYVSEEAMETVGELFTEIKNQFINGLKEQDWMDDATRAQAHLKLDKMRKNIGYPPFIKDPGKLNKFYENVDVSKSQLLQNQLSFIRDNAMKKLDTLGRLPDDKKYVIPMSSIYIWNTNVRSKNHHIVNSNIVKTQMEATLWFLESPLEVNAYYYPPVNGMTVLAGILQPPFYRGDTLKALTYGSLGTIVGHEITHGFDKQGSQFDENGNIRSWWTKRSHNNFVKRSKCLIKQYNKVKVYGVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6S2</accession>
    <name>A0A7D9J6S2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin repeat domain containing (Macronuclear)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059692</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012385">
        <property type="protein sequence ID" value="CAB4023235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6S2"/>
    <dbReference type="OrthoDB" id="5984230at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006915">
        <property type="term" value="P:apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.533.10">
        <property type="entry name" value="Death Domain, Fas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011029">
        <property type="entry name" value="DEATH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001875">
        <property type="entry name" value="DED_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48169:SF7">
        <property type="entry name" value="CASPASE 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48169">
        <property type="entry name" value="DED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01335">
        <property type="entry name" value="DED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00031">
        <property type="entry name" value="DED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47986">
        <property type="entry name" value="DEATH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50168">
        <property type="entry name" value="DED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0053">Apoptosis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="43234" checksum="87F03B8BBC6FAEC9" modified="2020-12-02" version="1">MAECRENGSPQGRRKVSVPKVRTVLKHIGDELTNDELEKLLFLAADHIPKSKTQGMNALNFFLALEERQLIDTKGDDVDYLLELLGELPRVDLVKKLKSTQPPSNYREKVVIEEEIIRTDAVVVANANTLEINANTWSVKQNKVMEASGDGGFLQDPNLVQSIFQKYNDTVYALEQANATNVELKKKNHQLEFEIDQLKDDQNNLIRERNSALGAKSEYVFKESELKKELSDLKRMNNLLGKNATKDTNTIEARDKEIAELKESLKKSENTANELRSELEKVQQEKIRMEEVLAKFQKVEEDNGRVTCKRCGLVYVEANNPVDACRYHSGQFGSVGALKKKMEWSCCRNTNKNAPGCCKKKHLTIDYPLPSPDLERKFTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8P6</accession>
    <name>A0A7D9J8P6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sulfotransferase domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A075122</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfotransferase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012864">
        <property type="protein sequence ID" value="CAB4024150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8P6"/>
    <dbReference type="OrthoDB" id="5946641at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11783">
        <property type="entry name" value="SULFOTRANSFERASE SULT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sulfotransferase" evidence="3">
        <location>
            <begin position="72"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfotransferase" evidence="3">
        <location>
            <begin position="138"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4024150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="36085" checksum="0CA8A42D9161E207" modified="2020-12-02" version="1" fragment="single">LSDIMQYSSDRRLHFISKPTKENIIWEKLYYHSIMSTSEGRNPAIELMNQRLSRLITKEGRQKALSFVPRSSDVIVATASKCGTTWMQQIVHQLRSGGDMTFTDIDEVVLWIDLAYDVGQDLDAEHTAVLKAENIFAFNFFGKKYFQPGEITLDEFVKNIMNRQKMRVNYFQHLLSWWPKRNDPNVLFLLYEDMLDDLESAVRAVASFMGIKDEASITNAVKMSTFDFMKQNRDKFSTNLVSSYRNKAMGIPEGVVSQRVATGPATKGREMMDEGTKQAVQGMWNEIVTKETGFQDYSEFRDGLKKEKQSGVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J9L2</accession>
    <name>A0A7D9J9L2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon-like family member retr-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013250">
        <property type="protein sequence ID" value="CAB4024811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J9L2"/>
    <dbReference type="OrthoDB" id="8195376at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="153"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="159"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="37012" checksum="D8C53FB9B2ACF9AC" modified="2020-12-02" version="1" fragment="single">MLILSSMHWKKGREVHKTLTFATPETETNQEGATTWKRTTNELKSAFKTYCNPRKNITFERHKFNIRNQEENESIDQYVTVLRTLAAPCEFETLHDGLIRDRIVCGIRNQSIKERLLRESELTLQKTLDICRASEVSRKQVKLLSDQSSANVDALGKDQRKHRNFRNHNNKPENGKPPNKSCGNCGRVHEPKSCPAYGKKCNNCQKLGHFAKLCRSQAKNPKKSVHDVDYESDSSTHGIDMAKTAVTSDNDEEHASLKINNTTIRIKLDSGAETNVLTKKDFEAAVPKRQRRSKLKTGAAKLTAFGGHNIPIIGKCYLKCQYKGATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JKE0</accession>
    <name>A0A7D9JKE0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037898</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017361">
        <property type="protein sequence ID" value="CAB4031101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JKE0"/>
    <dbReference type="OrthoDB" id="6153129at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206:SF1">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206">
        <property type="entry name" value="PROTEIN CBG10425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="27133" checksum="827E7279079B0B55" modified="2020-12-02" version="1" fragment="single">MRQPRRSLIGSMIGKKLMLATPLLKWYLEHGLEVTHVYQVVEYTPKPCFKPCGDAVLDARRAGDADTSKAIIADTMKLVGNSSYGKTITNKERHRKVNYCNDDEVSELINSPFYRQMNVIDDDTYEVESAKKKIKLDLPLQYAKLRMLQFYYDCLDTYLGRSDYEYCEMDTDSAYIAISGESIEELVKPGLREVFESDKCNWFPRSDTTEHAKYDKRKPGLFKVEWEGDVIVSLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JM69</accession>
    <name>A0A7D9JM69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058559</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017754">
        <property type="protein sequence ID" value="CAB4031585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JM69"/>
    <dbReference type="OrthoDB" id="5986544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="26295" checksum="01E34BF7730E33B7" modified="2020-12-02" version="1">MDTNGSDVRYKLDTGAQVNVLPKFQYNRLIRKPKLKNTKVKLTAYNGTNIPVVGKCIVRVAHKKNRDVPVLFIAAETTSLPILDLSTCENLNLVKCVMVVKPKEEQLPSFISEFECCFGELGILPKVHKMVIDPSVPPVIHPPRRVPITIQPKLKEELDRMEKLGVISKVTEPTDWVSSLVVVEKPDGSIHICLDPRDLNQAIKRSHLQLPTAEDIISKMTGARYFSKLDASSGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JNM1</accession>
    <name>A0A7D9JNM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049750</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018724">
        <property type="protein sequence ID" value="CAB4032821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JNM1"/>
    <dbReference type="OrthoDB" id="26719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24296" checksum="E8BA4155638E7C2C" modified="2020-12-02" version="1">MKDYSEWKTISSQGIANITPVSCSALLIKDPSTRSGMYYINPQGLNSSPLVQVYCNMSSKNGVPVTEIGHDSESRTRVSGYDNPGSYKRNIKYGISMQNIVTILNQSKNCEQFIKYECYQSALRGQSTYYGWWVSRQGTQMNYWGGAAVNSVKCACGMTNTCPGGRKCNCDVNDSTWREDSGYLTDKNTLPVSELRFGDTGGKREKGYHTLGKLRCWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JQ79</accession>
    <name>A0A7D9JQ79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 SUMO- ligase KIAA1586-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019378">
        <property type="protein sequence ID" value="CAB4033583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JQ79"/>
    <dbReference type="OrthoDB" id="6597828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF5">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="472" mass="53140" checksum="25529C045ED96E2F" modified="2020-12-02" version="1" fragment="single">MKRSMKSGHQKRTESKRKALQQSANAPGQRSLFEMFRSTTTNSSTTTNTERECIGTAEERSNEIIDFSGEKSQHVELPDPVPVMVVVESDTEAKETTNTCGNIATVSTSKSDSKNSNDWYRGMKLDVDWLLDAAKCLVLKKEIKDKRKRPTVTCLLCNKYEFQVRKMTSNCQLPIANGVRVDGKDRLKHVVDHLLSPAHEEAERLNDCDKTWCDKSDKHPWVRVFKKWNDEKLQGLVRIAIDAYNDSQVETLSARSWPSRSLAVEHSNHVLHHFESQGGDADFVPFDPPASCYHYRDPMLYAEIRNIIAKQEMKKVAQLLKDCLCYSVQIDGSADKQQVDSKFITARYVPCDEVSVKTVFLGIASSDLGGAEGLLDSFTTCIENIGINTDKLVGVTTDGENANTGKNAGLWKLLQDYIGRDILTIWCVCHRSDLALESVQAEVPELTIWMSNVLAVATFFRTSPRRTKLLHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K2J7</accession>
    <name>A0A7D9K2J7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023222</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024902">
        <property type="protein sequence ID" value="CAB4039062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K2J7"/>
    <dbReference type="OrthoDB" id="5971001at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF19">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="21298" checksum="31D78563DF858DC7" modified="2020-12-02" version="1">MANHGKVEEYDSQEEWSQYIERLEFYFEANGVDDEDKQRAILLSVCGSKTYKLIRNLITPNKPSEKTFAELVELVQQHQHPKPSAIVQRFKFNTRFRKPGESIASNVAELRSLSEHCDFKSTLEEMLRDRLVCGINDEQIQRRLLAESSLDFKKAMKIATSMETACSKECTRFDTSDGQCKYND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KWG7</accession>
    <name>A0A7D9KWG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc finger 184-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A014485</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011540">
        <property type="protein sequence ID" value="CAB4021638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KWG7"/>
    <dbReference type="OrthoDB" id="10004641at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24379:SF121">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24379">
        <property type="entry name" value="KRAB AND ZINC FINGER DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4021638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11598" checksum="C0C76DE80B1BE313" modified="2020-12-02" version="1" fragment="single">CCRREIVEEKDLQDHFTVDENSRTCYVCNECGKQFSNFKKLVRHVVREHGDNTDYQCSVCQELNSNEPTGIGYACFMCDLEFDVARELENHMVTHNEQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1P8</accession>
    <name>A0A7D9L1P8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012969">
        <property type="protein sequence ID" value="CAB4024335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1P8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18532" checksum="3C0A0C29D941DC18" modified="2020-12-02" version="1">MPTFNIGDFAKEKKRLLQQIVMKNRGIKGLEDELWKNKTKELSRMKVKCQRLDEKVEKIVKEVEGLQEVKDELDQEAKGSSEHGSNSTEKSRWRIPTYSQDGKISVSAALARKRRKATFEAARKIHGGKDELSAPGPIGLIDTALAKCSKDILVNSMSSSTKFLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L200</accession>
    <name>A0A7D9L200_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012294</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012869">
        <property type="protein sequence ID" value="CAB4024156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5971338at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098">
        <property type="entry name" value="RAPSYN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098:SF108">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="28"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81901">
        <property type="entry name" value="HCP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="22"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="10"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1638" mass="179645" checksum="12B39419428B6973" modified="2020-12-02" version="1">MAIDHYKKCLEISAETGNWLGMIRSNTNLGNAYQCLGEYQKAIDYYEKGLDISTTIGDRSGIASSNGNLGKVYFSLGEYQKAIHHYEKGLEISTAIDDRSGIASNNCNLGNVYLSLGEYQKAMEHCEKGLDISATIGDRSGIASSNCNLGNVYLRLGEYQKAIDHYEKSLEISTAIGDRSGIASNNGNLGNAYRCLGEYQKAMDHYEKGLEISTAIDDRSGIASNNGNLGNVYQYLGEYQKAIDHYEKGLAISATIGDRSGIASNNGNLGNVYLSLGEYQKAMDHHEICLEISTAIGNRSGIAGSNANLGNVYFSLGEYQKAIDHYEKGLEISTTIGDRSGIATNIGNLGNVYRRSGDYKKAIDHYEKSLEISNAIGDRSGIALDNGNLGNAYQYLGEYPKAIHHCEKGLEISTAIGDRSGIATNIGNLGNVYRRSGEYQKAIDHYEKSLEISSAIGDRSGIAGSNGNLGNVYFSLGEYQKAIHHCEKGLEISTAIGDRSGIASNNGNLGNVYLTLGEYQKAIDHYEKGLEISTGIDDRSGIASNIGNLGNVYRRSGEYQKAIDHFEKSLEISSAIGDSSGIALNNGNLGNAYQYLGEYQKAIHHCKKGLEISIAIGDRSGIASNNGNLGDVHLNFGEYQKAIAYYKTGLQISTATGDRSGIASSNGNLGNAYRSLGEYKKAIEHYNKGLEISSAIGDRSRIASINGNLGKAYQSLGEYQKAIDHYEKCLDISAAIGDLSGIASNNGNLGNVYLSLGEYQKAMDHYEKGLEISTAIDDRSGIASNNSNLGNVHLSLGEYQKAFDHYKKGLEISTAIGYRSGIASNNSNLANVYLRLGEYQKAIDHYEKSLEISTAIGDRSGIASDNGNLGIVYHSLGEYEKCIAYHKSALQINTVIGDRSRIAKNNCNLGNAYQCKGEYQKAIDNYKKSLEINTAIGDRSGIASNNSSLGIVYLSLGEYEKAIDHHEKGLDISTAIGDRYKIACSNGNLGNAYLTIGEYQKAIDHCEKGLDISTAIGDRSGIASNNGNLGNAYLSLGECQKAIDYYEKGLEMSTAIGDRSGIANNNSNLGSAYNRLEQYRKAIDYYKLGLEVSAEIGALPEAAADRSNLGNSYRCLMEYEVAISYLIESIRSFDRIFLDSVPDPNKLAFVDQYFKTHIILMSCFLSLERPESALLVIDLSRSKELHCCIEKRRNSVGKDLLDYARAIWDRIEAKEEQIEIEALQALLQQRKNDTTILVFAFDFEGVLNAWVLTDKVIYRKLLHARRETVLLLIKELLTRIDAQNSTFCKVDSDANTNSQAMFPVELRSRKPASKVEILASYSNLRDHQILEGLFKLLFDPVKDLVKGNKLIVVPDPQLFSVPFSALIDENGSYLSIKYSVQISPSLHTLKCRMEKFYDPNFGFALFVGNPAVGKVSLNGEDLAPIDLPNAAEEVKCLSKLFEANYFLGRAATKQRVLQHLSGASVIHIAAHGEPNRGEIMLAPNSSPTEPCSSVPRPESYLLTQRDIINTSVQARLIVLSCCYTGKGKITSEGVIGITRAFLAAGARCVLATLWPLLNDGVTKEFMEKFYADVCQETPVCKALQRTKNFFQTHEKNGYRHSWIWAPFTIIGEDVKFRKDEIEEIRKKSQEFFCCFELI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L280</accession>
    <name>A0A7D9L280_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011734">
        <property type="protein sequence ID" value="CAB4021962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L280"/>
    <dbReference type="OrthoDB" id="10056483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="153"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19464" checksum="A3D530C9F97A86D4" modified="2020-12-02" version="1" fragment="single">LVEVHDYTGSLLDAGKQIDVIYMDMSKAFDKVNHQILIHKLYNCFGISGSSLGWFSSYLLNRRQRVIVLGATSSEKPVLSGVPQGSILGPILFLLYVNDLPDVVNNAKVASFADDTKLFKCVDSHIDGASIQSDLDNLEEWSTSSGLVFNQNNSVRELPGKRLPPNSPRPSKTKPSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L3G3</accession>
    <name>A0A7D9L3G3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045666</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014049">
        <property type="protein sequence ID" value="CAB4026167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L3G3"/>
    <dbReference type="OrthoDB" id="5952105at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027805">
        <property type="entry name" value="Transposase_HTH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13613">
        <property type="entry name" value="HTH_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="526"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4026167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="526" mass="60706" checksum="9178DDE1796D4F9F" modified="2020-12-02" version="1" fragment="single">DSQCLQRNNRLQRVGSVSYMALKDPEYITISIQHQNECKSFLFAMDLFEVLPREISFQFPRWPTQTKERKTWIRWKQIQQKESPKRPDGQKTQGFSRSAVLDSYTFAKKIAIFTRGPIKYPVLIATFCVSFRSNSMPFQHRQLTLCGNSLSSKFEHHQPGTVKAGNIVKVKVRDLNHTIRIIVKDVENKEPEEAMNELKRLRKENQTLKEKIEQLTKEHKTFKDNPKLFMFYTGFQSYDLFKIFFEFLGPAVNKINYWGSNTRNDDSVTPEYSKRGPKRQMNPEQELFIVLARLRCGLLEQDLAVRCKLSTSHLSRICITWIDILHSHLRAIPIWASKASIQKTMPSCFRISYPTTRVILDCTELFIEMASSYRTQSATFSSYKHQNTAKGLIGIARNGAVTFVSELYPGRTSDQCITKHSGILQLLEEGDSVMADRGFDILEDLPDGVTLNIPAFMRGKDQLTVEEETETRRIASVRIHVERAIERIKNYRILQGKYPTISDVGKHAASSQVGLKSTMIYYIYPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6L1</accession>
    <name>A0A7D9L6L1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067449</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014386">
        <property type="protein sequence ID" value="CAB4026759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6L1"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="27518" checksum="5DA38E91C73613EF" modified="2020-12-02" version="1">MARICLKKEKNSAPVSSLIDPNVINAYFQTVNTDPNYSAPQLLEIPEGTRIPFLSVDIVYNFLRKQKRSSSGLDDLPHWFWKTFAAELAPAITKIFNVSLKVGKVPEILKRANIVPIPKENVINSSSELRPISLTDIIMRLFERCIYKNEIADVIYHSIDSDQYAYKVEHNSTMALVKCQHTWLKGLDNGVKYVRVLSFDFSKAFDSVPHDILFGKVKKLPFNPYIINWIIDFLNIANRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LH80</accession>
    <name>A0A7D9LH80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018229">
        <property type="protein sequence ID" value="CAB4032221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LH80"/>
    <dbReference type="OrthoDB" id="5989487at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="12126" checksum="53940FBBED908D74" modified="2020-12-02" version="1" fragment="single">NYEDVLGSLLDKHAPMKRRKITIRPRAPWYNANITEAKRLRRQLERKWRSSKSLSDRAAFVNQCKVVNNLIYESKQLYYNDLIEENSSNSKLLFKIVNKLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LT25</accession>
    <name>A0A7D9LT25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019802</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023957">
        <property type="protein sequence ID" value="CAB4038223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LT25"/>
    <dbReference type="OrthoDB" id="8963429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00304">
        <property type="entry name" value="RT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058912">
        <property type="entry name" value="HTH_animal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301:SF10">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26215">
        <property type="entry name" value="HTH_animal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="564" mass="64138" checksum="4BDBE7DF3135114E" modified="2020-12-02" version="1" fragment="single">KPPSNFIKNISSRVLDEHEKTVLSYESAIYRENLSAEAKETVRAKVASTLQTSQKPDDSIAITPADKANIIKKPLYSKLRCSVAQAPKLYGLPKIHKENTPMRPIVSFCSSPTYELSKYLARILKPLTERSEHRLVNSADFITKIQAKTISATHELVSFDVKSLFTSIPLKLAIECMEESLANYDDELTIPKEEIIDLLKLCLESTFFQYNGSFYQQLHGTAMGSPVSVVVAEIVMQRLEERALSSYPNPPPFWFRYVNDTLTSVDKHQKNDFVDHLNKQNPSLQFTMEPEKDGKIAFLDCTITRDGNSLRTSVYRKPTSTSRLLDNSFYHPTSHKSATIATLVKRAHAVCSSSETLEEEMQHLDKVSTINKYSKPFVNNVIEHSRKTTPTTDETERKKTIATIPYIKGTSERIGRILRPFNISVAHKPTVTLRNTLTKVKDPTNTKTRIGTVYKVTCAECPATYFGETGRTLDCRIKEHKRSTEKQDVANRIAVHHMETNHRIDWEGATCMEFNGFEDERMFLESWFTKCDENSINICPDMPGAYARANNITNTRSRNKPYQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M1Y6</accession>
    <name>A0A7D9M1Y6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086989</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027095">
        <property type="protein sequence ID" value="CAB4040672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M1Y6"/>
    <dbReference type="OrthoDB" id="5975172at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="25954" checksum="44683760ED902D38" modified="2020-12-02" version="1">MSERNKGNGVYQISVGNNEVTDVYCQMTSVSGCQGGGWTMAMKIDGSLSTFKYSSPYWTKKNTYNDDAYGRNGGLDNHEYKGSTYWRTSFKEICVGMKYGGRLRAFSFSYPATSLYDLIADGNYRQTHVGRAQWKSLIYGSSLQRHCNREGFNIQLGRSGHHPRVRFGLVGNEQNHCNSPDSFIGLGADGGLNIWPWCDRNFRPSANAAGNLGQCTTDNGNKNARAMAYILVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M745</accession>
    <name>A0A7D9M745_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A069260</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030529">
        <property type="protein sequence ID" value="CAB4042636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M745"/>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049:SF1">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="62"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="282"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="419"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="511"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="564"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="511"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="564"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="585" mass="66629" checksum="37740A97AC3B8E30" modified="2020-12-02" version="1" fragment="single">DKVPQAEDKVLHAQKKVPHAEDKVLHAEDKVLHAEDKIPHAEDKVPHAEDKVLHAENKVLHAENKVPHAEDKVPHADDKVPHVEDKIPHAEDKVPHAEDKVPHDEDKVPNAEDKVRDAEEKFPHAENKVPHAEDKVPHAEDKVLDAEDKVPHAEDNVPHAEDKVPHSKDKVPHAENKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVLDAEDKVPQAEDKVAHAEDKVPHVEDKVPHGEDKVRHGEDRVPHAENKVPHAEDKVPKVPEDKVPHAEDKIPHAEDKVPHAEDKVPNAEDKVPHAEEKYPHGENKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPYAEDMFLTLRTRFFTLRTRFLTLRTRFLTLRARFFTLRTRFKFWKGELPDHINQTLVRHPQIYYTRQSIKVAEVPHAEDKVPHAEEKVPHAEEKFPHAEDKVPHAENKAPHAEDKVPHAENNVRHAQDKVPQTEDKVLHAEDKVPHAEDKVLHAEDKVLHAENKIPHAEDKVPHAEDKVPHAENNVPHAQDKVPQAEDKVLHAEDKVPHAEDKVLHAEDKVLHAENKIPHAEDKVPQLRTRFSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M9I1</accession>
    <name>A0A7D9M9I1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047768</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036873">
        <property type="protein sequence ID" value="CAB4044922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M9I1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="30119" checksum="D2D20190F387CF3B" modified="2020-12-02" version="1">MQRKFGTLQRLKINNIPILYLPGAVDGVGLTVVDDVGPTVVDDVGLTVMDDVGSTVVDDVVLTVVDDVVLTVVDDVGSTVVDDVGSTVVDDVGSTVVDDVVLTVVDDVGSTVVDDVGSTVVDDVVLTVVDDVGSTVVDDAGSTVVDDVGSTVVDDVVLTVVDDVGSTVVDDVGSTVVVDVGSTVVVDVGSTVVVDVESTVMDDVGSTVMDDVGSTVVDDVGSTAVDHVGSTVVDDVGSTAVDDVGPTVMDDVGSTVMDDVGSTVVDDVGSTVMVDVGSTVVNNVVLIVVDGVVLTKTNMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FTJ4</accession>
    <name>A0A6S7FTJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrovirus-related Pol poly from transposon 297</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A014474</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000058">
        <property type="protein sequence ID" value="CAB3977611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FTJ4"/>
    <dbReference type="OrthoDB" id="5980566at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000063">
        <property type="entry name" value="Zinc knuckle domaincontaining protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="153"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="226"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1119"/>
            <end position="1220"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="234"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1178"/>
            <end position="1189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="1207"/>
            <end position="1220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3977611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1220" mass="137727" checksum="8CBBA4DB841330D2" modified="2020-12-02" version="1">MAVTGLATPRLDWHAADLPQALKKFKAVCELYFSGPLKSKSEQEKISYLLIWTGDEGIELASTWDLSDEERKKLNTYWTKFEEYVAPKSNFRLARYKLRTLKQAEGETIDSFLKKVRVNVQAKLLEQDSTLTLDKAIDIARTQEATSTQLADIRGPSNSIHGLEHKNRKKQQQQTLDKSSMKVCGNCGRSHDLSSRSLCPAFNTRCKNCNRLHHWGRVCRSGKQLTLHGKNHGKPQQYPKGKPQKQVNSLEQQPDHADPVVPQLYFHSISIHNLNEYNTQAIVDLNVSSDQVTKSVPCKIDTGAEGNVLPLDMYKQLYPNSHYNLNGKPSGLIPSNTRITAFGGHKIEHYGICKLHLTHNGNTTEYPFHVVNTSGMTIIGLPTCRSMNLVTLHYSIDLDTAKPPMSTSNGDLKAKKDILYEYGDVFNGIGCFNGEFHITLDPSVPPVIHPPRRVPEALREPLKKELDSLESQGIIVKDIFQRKVDETFGDLPGVTGIADDIVVHGKTRLEHDTNLRAVMERAKNAGIRFNPDKCIIACNQLPFFGHILTNEGLKLDPKKAEAISNMDPSTSLADLQTFLGMVQFLSRFIPNLASESAVLWDLTKKSSEFQWNPEHQAAVSKIKKLITDPSSLQYFDSRKPVVIQVDASTRGLGATLLQENGPVEYRSKLLTETEQRYSNIEREMLGIVHGLEKFHYYAYGRHVVIETDHKPLETIFKKNLASAPPRIARMMLRIQKYDIEIKYVPGKDIPLADALSRLSPCEADEITGLDISVHELHLHLNASNTRIKQIQVETANDFELTSLRSVISVGWPDKRSDCPPHLYPYWNYRDEMTVADGMILKGTRVLIPKTLQLEVLAQLHYAHQGSEKCKLRAKGSVFWNNINRDIDNMVRSCGPCQHNQHMNAKEPLTPHDVPPKPWHTLGSDLFFWNNSYYLLVCDYYSKFPLVRKLSNIQSSTVIAHLKSMFEEHGIPSKLVTGNDTQYTASTFQEFANLYGFEHVTTSPYYSQANGFIERNVQTVKGLLQKCKESGADPHLAMLCLRTTPIDHHLASPAELLNSRVYQSNLPAISKTTSFDPESNVKLQARQDLQKWYYDRSSKELPTLKPGCNVRVFNHHSHKWESGSVKQQTETPKSYVVDMSNGGTLVRNRRHLRPTGESDIPKSPNHHRQNPTADVELCPSTSVADNSTPIVRSPPKDLDGNPPIQLRRSSRTIKKPNKLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G066</accession>
    <name>A0A6S7G066_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Solute carrier family 12 member 8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A077152</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SLC12A transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000459">
        <property type="protein sequence ID" value="CAB3982049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G066"/>
    <dbReference type="OrthoDB" id="2020542at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015379">
        <property type="term" value="F:potassium:chloride symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006884">
        <property type="term" value="P:cell volume homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055064">
        <property type="term" value="P:chloride ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055075">
        <property type="term" value="P:potassium ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990573">
        <property type="term" value="P:potassium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1740.10:FF:000030">
        <property type="entry name" value="solute carrier family 12 member 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1740.10">
        <property type="entry name" value="Amino acid/polyamine transporter I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004842">
        <property type="entry name" value="SLC12A_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11827:SF6">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 12 MEMBER 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11827">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0868">Chloride</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0630">Potassium</keyword>
    <keyword evidence="4" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0769">Symport</keyword>
    <keyword evidence="5 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 14" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="54"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="91"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="139"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="167"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="217"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="251"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="285"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="345"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="370"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="590"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid permease/ SLC12A" evidence="15">
        <location>
            <begin position="28"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="448"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="455"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00073711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3982049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="707" mass="77270" checksum="FE5062014107A10F" modified="2020-12-02" version="1" fragment="single">GDLEERKPWWKANFFVTEPVLFGTWDGVFTSCMLNIFGVVIFLRTGWTVGNAGIALSLFIVLLTLLISLIPVLSAIGIIDHIDHIESGGIYFVLTHILGARIGATVGILYCFGQAASISLFSSGFGESLAETTSWDNHWAARTIALIAALTILGIILAGVKWVVKLQLLLLAVLVISVLDFVVGTFAHTDLANGLTGYKEENMVKNINPKFSEGQSFFTVFGVFFSTATGIMAGINMSGDLKNPGENIPTGTLAALGVSGLLYMLFALLLGAVCTREALLSDYMIASKVALVGVLFLFGLYISSLSSCLGAQYAAPRIIQCIGRDSVIPLIKALGKGRGANQEPYAASIFVGLIAIILILIGNVNSLAPVVTMPFLMTYAAVNYAYFKLVMCMDLQKRRKLIEEGVLVDDTPKSPKNEETRLVSKAEMMDGLLAKDYGTGIENGQIVGGNTVPDVTEKSDVGEKENLDKDTKEDNVGVPVDNGGVTVDSIGVTVDNVGISMDNSEDDAGNNTSMIVDNRGNEDGGNQGDTNTDVDYCELDVGEETELYSKENEKEESKKKIDNLKPKPCYPKSHFTVEIEQKRWTVYSQLVNRWISLAGAFASVFMMFLIHWGYALANISAGLLIYIYIGQTNPGVMKGIAYDFNFARWVQSLWEKLRRRSPNQHRVVKMDTSIPYEITLFQVTEENPDFSNRERRHHSSVVKIISP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G078</accession>
    <name>A0A6S7G078_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067896</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000206">
        <property type="protein sequence ID" value="CAB3979531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G078"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="234" mass="26443" checksum="BCA560678BBD79CA" modified="2020-12-02" version="1">MLPVVESITGPQREVVSIYNDDFATPLSRPQYFIKVYRCVQVDFGECPSSGPSGYPVPKNIEKIEIVVPDITKGNDRNSTNKTKFYNYVVYNHTSCKCGTLKFRASTLYQTITNNEVSEAEYIADCTKNPVNLIHRCHSHACKPQKRYRFTHIDAVRPSTYLAYKQCFPGSVALKNNTSTVPVTLINNKVKFVNLTSDISCKAYDGKNAEPQLCSKPTTKSTRNRLQLQRKISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0K3</accession>
    <name>A0A6S7G0K3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072134</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000869">
        <property type="protein sequence ID" value="CAB3985408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0K3"/>
    <dbReference type="OrthoDB" id="5986544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="967"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="967" mass="110114" checksum="7A69F1A4C1869572" modified="2020-12-02" version="1" fragment="single">KRPLKELDIAVIDCESPKEENGIVEKLPSPGLEPMRKEPGTLSPAKHQPETSKPVRPQRCRHSHRLLKSTDIRARDTTEGGTAKRGGCYNSLNENTQRTLNFNIIHGDYQPVLSLDTSIALAVVNLTNCDILALTIKPPEDNSYVAEEYADVFDGLGEIPGAHTITIEDTAKPVIHAPRRVPVALRSQIKAKLDELVDRKVIVPVTEPTRWVSSMLAVVKPNKIRICIDPRDLNRVIRREHYQLPTVDEVTSRLTGAKKFTLCDAKDGFHQIKLDTASSYLTTFNSPFGRYRWTRMPFGISSAPEVWQRRMHEFAQGLNGVEVIADDFLIAGFGETGEEVDRSLETNERAFFKKCREWNLKLNKSKLKRSQTEVRFMGHLITADGLKADPAKVEAILDMPAPTDTKGLKRFLGMVNYLAKFLPLLSDMTEPLRRLEDKDVEWCWLEQHQQAYDTVKKSLAKAPVLRYYDVSKEVTIECDASDTGLGAVLTQDGQPKPSPKRLQRMLLALQNYNLNVQYKKGKLMWISDTLSRAYRNTTESWRHDTTEVRALEEIDHAENLSISPDRLDQFKRETPSDKTMQSIIVAVKNGWPTSKRQCSQDLAPFYDKRSELVVDNGLVFAGERLVVPKSMRKEMLTQIHRSHIGIEGCLRRAREAYQPAQCHHWSGFFEVQELTRTTADKVIVACKVQFARHGIPDTVITDNGPQFSATEFSAFARDWQFKHLTSSPRYPQSNGRAENAVKTCKMLMTKAKAAGQDPLLAFLDWRNTPTEGLGSSPAQRLMGRRTRTLLPTHKNLLKQPINEGTRDKLAARKSRQIRHYNKTHHPLKPLKKGQAIRMKLPNATKWTLGTCTRVLDNRSYEVEVSGRKYRRNRRQLRASQERPPTPPAETISKISSNAINYRHTANKNKAMEQVQSDNCPSENDLIRFYKAKARLESRHIFCIHHREEIRRSLSRLRPTRANDGVIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G819</accession>
    <name>A0A6S7G819_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078433</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001280">
        <property type="protein sequence ID" value="CAB3988098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G819"/>
    <dbReference type="OrthoDB" id="6010602at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.90.10">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029034">
        <property type="entry name" value="Cystine-knot_cytokine"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57501">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="359" mass="40840" checksum="14208EAAFBABC956" modified="2020-12-02" version="1">MDTNEVMPLLCLTSQDQRIITTCVGDFGSIVNLKYIAGQYFVMALLLQGFVNGQEYRPGEHSDGGLYEEVVSIYNEHFTTPESREPYLIKVHRCIIACRTKTSIAMPYALIQKEIEIVVADINNPTKFYKYVVYNHTKCGCDKHNVTKNELHKNLVSNEVNETEFKAKLPNNPENLRNCSPSSFCSKPQPRHKLNPIPRRLTAIVPGQRFVLYYRCLPGCGATTNNTKMKTEMLSGSDKYYIWIKTDTHCWTYQKQSRVARSILESLNNLNTTYPSSLKTKLTQDSETESGVLIYIASPKVFLAAFVLSVILVSILIVDFNLCHRKKGIMYSVLSCRKDMKDNACSDCAERQKKVIEIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAI3</accession>
    <name>A0A6S7GAI3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SH3 domain-binding glutamic acid-rich 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SH3BGR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000493">
        <property type="protein sequence ID" value="CAB3982371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAI3"/>
    <dbReference type="OrthoDB" id="9932926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006993">
        <property type="entry name" value="Glut_rich_SH3-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051033">
        <property type="entry name" value="SH3BGR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12232:SF15">
        <property type="entry name" value="SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12232">
        <property type="entry name" value="SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04908">
        <property type="entry name" value="SH3BGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51354">
        <property type="entry name" value="GLUTAREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10520" checksum="FBADF942277C261A" modified="2020-12-02" version="1">MSDKIILYWTSVTSSLEIKKEQQRIEMVLSGKKIEYEKVDISLVEGAKEKMREICGEGTLPPQLCKGDTYLGNYAQFDAAIENEELDKFLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GB59</accession>
    <name>A0A6S7GB59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001012">
        <property type="protein sequence ID" value="CAB3986412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GB59"/>
    <dbReference type="OrthoDB" id="2435398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="211" mass="23846" checksum="31E9FE907E783DCD" modified="2020-12-02" version="1" fragment="single">MPDSLKIAVVQPLLKKYNLSYEEFCSFRPISNLKSVSKSIEKAVAVQLTDYLTENHLHEKFQSAYKPCHSTETALLRVQNDILQALDNGDSVILVLLDLSAAFDTVDHLMLLTRLSNRFGIRGRVLDWLTSYLTSRKLFIRVEGTDSLLSDLDCGVPQGSVLGPLLYSLYTAPLADVARRQNLRFHFFSDDGQLYIAFKTNDRDDLISSKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHK4</accession>
    <name>A0A6S7GHK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000764">
        <property type="protein sequence ID" value="CAB3984630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHK4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="61" mass="6973" checksum="CC22AA7CE8DE4769" modified="2020-12-02" version="1" fragment="single">MQGQGAKRLEAKQDKKNGLQQVFNQPNVPDNVLMMLFFKAVTRSQNYVSQKGKVKLKMGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GN13</accession>
    <name>A0A6S7GN13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001816">
        <property type="protein sequence ID" value="CAB3991262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GN13"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="15736" checksum="135048BE834A1E7B" modified="2020-12-02" version="1" fragment="single">RTRFLALSTRFLPLRTRFLALRKKVLAPRTRVLALRTRVPGAEDKAPGAEDKVPGAEDKIPAAEDKVPVAEDKVPGAEDKVPGAEDKAPGAEDKAPGTEDKGACAEDKVPCAEDKVPCAEDKVPCAKDKVPAGEDKVPGAGCKGQGSWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQI4</accession>
    <name>A0A6S7GQI4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017516</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001929">
        <property type="protein sequence ID" value="CAB3991856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQI4"/>
    <dbReference type="OrthoDB" id="10046160at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="20304" checksum="35F85C4997C78DA0" modified="2020-12-02" version="1">MSSISGQHNTKLTTEKEALKDISEPKVPRKRKAPARYEVGREPWYTETSEDLYRKIYYEALDLIVSAINERFDQPSFKAYAKLEALLLKSLKSEDISYEMACVKEVYHQDIKVEFLIPQLEIFKVLMKERKLEYFAEVLDAVKNLDYNTQQMISEVITICKLLLVNPATSATGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQQ6</accession>
    <name>A0A6S7GQQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A006926</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001948">
        <property type="protein sequence ID" value="CAB3991946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQQ6"/>
    <dbReference type="OrthoDB" id="6619746at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="401"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="425"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="363"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="8"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="438"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3991946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="463" mass="53978" checksum="BB69B40406AAB13C" modified="2020-12-02" version="1">MENPKGSFRKEIKRLASERKKRRERNERNLRKEYKNADASHCVFPYIGIVDDAGRGRPEKAVERLREYAELRNKMMLVTEEALVEVRKVIREEVRPKPMTVVQLRTVFRKVLIPYGCNPRKSYILELYRIKVAEPSRSVLEIENMMAVEMKRELSRLGLDFLTNTNKTVLKKLLVENAVSNQDPKPFEWDYHLSRYWIGLSRWYTKGVYPYEWMDGHDKFDVICLPPKEEFYSGLTGEDISDEDYERAKKVWKGIRGGVITAVMRYGAADNKYIGISDIPEGVIELMKDLNVRIRNDPTEIKEKVLDFENRLCVFLWDYGHEEDDKVMTYVKPNPENPAPTTVTDPVKTRVKDPRRVEAGKKLAAISQQAKAAKKARLEMERNGQQQEEIKEENKTSMFSLNNVCMVLGLGIGLGSLYLAWQSSCENKEKKDDDDEKEEKSIVEKEEPTEKDSERIPFDNRFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVJ0</accession>
    <name>A0A6S7GVJ0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">5'-nucleotidase</fullName>
            <ecNumber evidence="3">3.1.3.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A074460</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the 5'-nucleotidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020002764">
        <property type="protein sequence ID" value="CAB3995943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVJ0"/>
    <dbReference type="OrthoDB" id="7722975at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008253">
        <property type="term" value="F:5'-nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009166">
        <property type="term" value="P:nucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07409">
        <property type="entry name" value="MPP_CD73_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.21.10:FF:000020">
        <property type="entry name" value="NT5E isoform 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.780.10">
        <property type="entry name" value="5'-Nucleotidase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008334">
        <property type="entry name" value="5'-Nucleotdase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036907">
        <property type="entry name" value="5'-Nucleotdase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006146">
        <property type="entry name" value="5'-Nucleotdase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006179">
        <property type="entry name" value="5_nucleotidase/apyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11575:SF24">
        <property type="entry name" value="5'-NUCLEOTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11575">
        <property type="entry name" value="5'-NUCLEOTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02872">
        <property type="entry name" value="5_nucleotid_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01607">
        <property type="entry name" value="APYRASEFAMLY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55816">
        <property type="entry name" value="5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00785">
        <property type="entry name" value="5_NUCLEOTIDASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Calcineurin-like phosphoesterase" evidence="9">
        <location>
            <begin position="27"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="5'-Nucleotidase C-terminal" evidence="10">
        <location>
            <begin position="339"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3995943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="547" mass="61264" checksum="F7E8FB69618FCA11" modified="2020-12-02" version="1">MGGRASYIREIFILFCLQVSIALCFNLTILHTNDIHGRFEETDKRGFTCHSNKEACFGGVARIATAVKEVRNKDENVVFVDGADRFTGTIWSEVYKGNASKVFFNELNYTAITLGNHDFDYGVKTLLGFLEEIKCPVVVSNMDTSKEPLWPDATQLVRTTVIVDVNGEKIGFVGYILPQTSRTSNPGENIKFLPIITSVQNAVKELESKGINKIIAVGHAGYNVDTKIAKKVVGVDVVVGGHSNTFLYSGKPPSDDKRKGPYPYIVHPDHNMSLSVPVVQAYYYTKYLGKLQVMFNDLGEVTGWSGNPVLLNSAVAKDQHVYGIVKKMKKLVDERGNEKIGQVKVQLTAMNCDTEPCFLGELITSAMVYHFRSYNASISLFHGSNLRTLPTDGQGNILYKDLFLSFPYRNTIDMVELSGTDLKSSLEATSFLQMQGLRVKYLIGKPRRVEDLQVKQVHCPTNNCYTPINMSKTYRVVSDSYFISTSNRIIAKKGRNRIRGNSIYDVLLDYLEAKYPVKNDVSIAAKLRHSFVVFLSVMVAQIIIFWH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0L7</accession>
    <name>A0A6S7H0L7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TNF receptor-associated factor 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018899</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002789">
        <property type="protein sequence ID" value="CAB3996056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0L7"/>
    <dbReference type="OrthoDB" id="5972556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031663">
        <property type="term" value="P:lipopolysaccharide-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049342">
        <property type="entry name" value="TRAF1-6_MATH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF152">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21355">
        <property type="entry name" value="TRAF-mep_MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="188" mass="21687" checksum="F8745470D91C2F8C" modified="2020-12-02" version="1">MTLLKNTLIELEARMGNGVYLWRITGYARHLENARDNVVTALHSPPFYTNFYGYKFCLRLFINGVDTPLDPEERCRVSLFVHMMQSDWDDTLEWPFSGKISLSILDRSDAGEYKRHISETLVTRPNLLAFQRPTTPRNHIGYGYVDFTFTETLHDRQYLKNDCLVVRVQVHSCSSQCPSSHSSSQSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H495</accession>
    <name>A0A6S7H495_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Calmodulin-alpha-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052456</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003594">
        <property type="protein sequence ID" value="CAB3999464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H495"/>
    <dbReference type="OrthoDB" id="26525at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016460">
        <property type="term" value="C:myosin II complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000178">
        <property type="entry name" value="Calmodulin-2 A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050230">
        <property type="entry name" value="CALM/Myosin/TropC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23048:SF0">
        <property type="entry name" value="CALMODULIN LIKE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23048">
        <property type="entry name" value="MYOSIN LIGHT CHAIN 1, 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="22456" checksum="71EA743ED6230236" modified="2020-12-02" version="1">MEDKLTEEQVEEYRDAFRFFDKDESGYITTKELGSIMRSLGQNPTEVELQEIMNTVDFDGNGTIDFNEFVNMMININNNTLDEAELVEAFRTFDNDDKGYIFSSELRSVLRYIGDNIPDEEINDIVKDARHGFNRKILFEEFKQMFEVSRQKAAMAKQIRRNAGILFKSTATSPITALFCHHRDIETNEHART</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6M3</accession>
    <name>A0A6S7H6M3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">DNA repair protein RAD51 homolog 3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A068702</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001990">
        <property type="protein sequence ID" value="CAB3992157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6M3"/>
    <dbReference type="OrthoDB" id="5957327at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033063">
        <property type="term" value="C:Rad51B-Rad51C-Rad51D-XRCC2 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033065">
        <property type="term" value="C:Rad51C-XRCC3 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005657">
        <property type="term" value="C:replication fork"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008821">
        <property type="term" value="F:crossover junction DNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000400">
        <property type="term" value="F:four-way junction DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000707">
        <property type="term" value="P:meiotic DNA recombinase assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007131">
        <property type="term" value="P:reciprocal meiotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052093">
        <property type="entry name" value="HR_Repair_Mediator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013632">
        <property type="entry name" value="Rad51_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46239:SF1">
        <property type="entry name" value="DNA REPAIR PROTEIN RAD51 HOMOLOG 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46239">
        <property type="entry name" value="DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08423">
        <property type="entry name" value="Rad51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RecA family profile 1" evidence="8">
        <location>
            <begin position="1"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00040674"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3992157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="274" mass="31274" checksum="5AE38086545DFBED" modified="2020-12-02" version="1" fragment="single">SIAQRIENVNEYFTFSLYSNVCRSLFEKHKLLFSFLVCVRILQNENKIDIDEWRYLLAVTDASFSVERLASIAKGLVKQLTDVNAEKSPDDQYSNMDQFTVEYILSNIQVAHCLDRIELIAASHQLPDQIRSLGQVKLIIVENIANPFRCEFASHALRGRILSELAQRFLKIAYEHDLAVVFTNQMTTTRAGKLVPCLGQYWGHSCSNRVILAREGKYRMAHLKKSSWGKETTVSYIITEEGVRSAPESVQCRPGSSSCMMRFDDILMRICASF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9E9</accession>
    <name>A0A6S7H9E9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050850</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003960">
        <property type="protein sequence ID" value="CAB4000919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9E9"/>
    <dbReference type="OrthoDB" id="425923at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052090">
        <property type="entry name" value="Cytolytic_pore-forming_toxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31594">
        <property type="entry name" value="AIG1-TYPE G DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31594:SF14">
        <property type="entry name" value="FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="42526" checksum="177CD7DF4303B3D4" modified="2020-12-02" version="1">MTVPFISGMQLGSAFDYSKFKVGNNLVVDNVRNESIQRRNDMSYMKFKMIKSQKDISDVLDVSGELSVKVMAGLVDVQGKGSYLKSSVTSGNTVEVLAQIYYRTVTKTITDDAMIPITDWRNKIDGGRHYIRSITYGGYLIASLKYTAKKDETKEDIQASVEVNVNTKKVNVGIKGQFQSLAESANSVANLKISYTSSELPDDTPVDLDSILKAISDFPNKVKQSKNGIGVPIEVEIRELKYLQGNNELDYVVSGLIAGKVRRFEAMFADLETTYDAIDKLVTDPKHEKMGDQLAAIYGEFKSKIDRIKREFYKAVNNLDLNVASGDLDQLTKAFEAYKAGDKGFVPGKYSRQFKRLQKEDPLPQPWVCRTYTVILEGPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HAW6</accession>
    <name>A0A6S7HAW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nck-associated 1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A007415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HEM-1/HEM-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002248">
        <property type="protein sequence ID" value="CAB3993370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HAW6"/>
    <dbReference type="OrthoDB" id="548214at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031209">
        <property type="term" value="C:SCAR complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016477">
        <property type="term" value="P:cell migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030031">
        <property type="term" value="P:cell projection assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030866">
        <property type="term" value="P:cortical actin cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048812">
        <property type="term" value="P:neuron projection morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019137">
        <property type="entry name" value="Nck-associated_protein-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12093:SF10">
        <property type="entry name" value="MEMBRANE-ASSOCIATED PROTEIN HEM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12093">
        <property type="entry name" value="NCK-ASSOCIATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09735">
        <property type="entry name" value="Nckap1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00037947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1065" mass="121653" checksum="A2B86850F8F0D319" modified="2020-12-02" version="1" fragment="single">GQAQPIQGQEKDIVKGLSNYYYTFVDVMQFKDHTSEILTMIDASFVNFDISLNFDLTRAYLDLIVTYVSLMLLIARVEDRKAVLGLFNYAYEAQNGRSDEYFPRLGQLIMDYENPLKKLSEDFTTHQQRVSQALHSVHAIYVRRNQTGEQWRQSQLLSIISTPATMLEPAQSEVVACEYLPLSAMNKWILFCYCLCYNHINDPGAVDIWKAALCDGYCLSLCRDEVYMVHKEFHTFFDALKGQSKRAKEIQECGSISLSNSPAIHRERRNYLRAAMQELSHIIADQPGLFGPKALVVIQALSLSSDEVHWLIRHKEHNPPKGKKNPDDYVDARLSHMLFLIEELYAMMLKYTSVLQRYYIQYMSGFDNSLLKEILQKIPIVPEDVSLLMTSFTNTLSSLSVKQVESNTEFDFDGLRLDWIRLQAYTSIRGAAPEIKDIRDMAVLLNTISFHSKLVDNQEGLLNEVADLTFFCFYPTSLEEAFHQCLSSLGQQKYSITFPLLCSHFMSATNPSCPEERHLLGERSLSAVNMFLDAIAKQAKEVVQQYCKEHLKLFHQLDPLNALHLLVDAAAKKKKDKNKKNQQPEMAMPGDESYRKTREALTQLDAKLLALSDLAVALNYVSHIQVWEHNFAPKEFLAVHLEDFFSKSVVKLTGYDSEKQEINRPSELLNNVKVLMGVLRCVENYANVDMSRICNHAMLQQTQPVDSHGGITVCGMYSQWYVEILLRQVSTGNMLYSPNRRSFITKTATTNFKADEFTDPVELRALATLLGPYGMKYLGDRMLQQIASQMGEVKKLVKTNKDVLTSLRSSLDKQEHSLELVRRLKNTDDLLIRMTIVGVILAFRELTQEALRDTLEKRVPFLVCYVNDFQQHFSKESENRVLVDEMAIAAGYTCDVDRSLCTVLKQHREKKSEDDIQIWSLLLVFLGAGIPFQASKDDCEYNPNLEAHENNFHCLAKAIDRISVALCSNNGDNIEVRLREFLVIASSSLLKLGLESEKDMPRNRESVYLLLDMIIQESPFLTMDILESCFPYSLLRNAYHQVYKKRIGGKKARSVATTVDDSSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBU4</accession>
    <name>A0A6S7HBU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076206</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002266">
        <property type="protein sequence ID" value="CAB3993467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBU4"/>
    <dbReference type="OrthoDB" id="6769862at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="19014" checksum="300ABBFFD89046F8" modified="2020-12-02" version="1">MWLALFSSERSSVLSDLDIQILKKQPDGFTFTLTKPRNTGDPRPLTTIAFPCFKEDSTLCPLKCLESYLNATSEFRSLPECKKLFLSTLRPHRHVSKSTIARWLCDTVTASGIDSTIFKAHSTRATSTSTAAKKQLPLNDNLIMGDWTSFSTFQRFYYKLLLSLGFLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFQ6</accession>
    <name>A0A6S7HFQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioredoxin domain-containing 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004543">
        <property type="protein sequence ID" value="CAB4003119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFQ6"/>
    <dbReference type="OrthoDB" id="291007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2080">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037221">
        <property type="entry name" value="H-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019019">
        <property type="entry name" value="H-type_lectin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09458">
        <property type="entry name" value="H_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141086">
        <property type="entry name" value="Agglutinin HPA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="H-type lectin" evidence="1">
        <location>
            <begin position="82"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="16412" checksum="7A06D6B3D6929725" modified="2020-12-02" version="1">MKLLLVCLCALIALAFGNVVDLEFKRTAQTGSVNRFETAVLANNDDAPVKRGICGDPCQSGYKASKYCTSAAKHCFGNGQTVYIRFNPAFHTTPKVTIGLTLLDTNKYYNVRVRASVTSVTKNGFWLKFQPWDISITYQIGVNWMACQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGM6</accession>
    <name>A0A6S7HGM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024974</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004688">
        <property type="protein sequence ID" value="CAB4003656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGM6"/>
    <dbReference type="OrthoDB" id="7388703at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24188" checksum="B192D107231CA3F8" modified="2020-12-02" version="1">MEMKDVALKAVLQKPSFKSKCKQHSECVRRRFNLWKLGDFNGLLKECRAIQSRLQSTWKPRSPEHVSRMFANLMLSGKVNAAMRLLDDNSTSGVLQLSEVTLRGLKSKLPEPMEADKEILITGQVPFVDPEAYVEAYVACRLIPLDKCPGVRPIGIGEVIRHIIGKSIISVIKPDILMSTGSLQLAAGLPSGCEAAAHAMEEIFQEDETDASRRMLNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HL07</accession>
    <name>A0A6S7HL07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase UPL2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A051468</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005368">
        <property type="protein sequence ID" value="CAB4005954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HL07"/>
    <dbReference type="OrthoDB" id="5948939at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14279">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003892">
        <property type="entry name" value="CUE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02845">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00546">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51140">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4005954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="36983" checksum="2AB195A7D6493757" modified="2020-12-02" version="1">MNFWTLKNKLIFVSIETFPTPQSNHLRRVPLPAPDHAAPSKEAAEYLLVMLIFDYNTQNNIQSSSSEDEMIASTSYYDIRDLIKGATETAHTSTEKAVSSTQNASLSTEKASLSSEMVSSLSNSSECLASDVQMLREVLPNIDRQKISDTLVASGMDLEKAINKILSESASEEAEHSHEDDTDDPELAVNPFGQELDMCLDRNKDILEQAVRKYKHPSFDTTRPLNVAFQDEPGVDAGGVTREYFSLLMQRLENQTGTLKLFEGTRGHLVPMHNYYLSGGLFVMVGKMILHASLNKCNGMAGLSQAAVTYIISGSCNAVVEHIVLDDIPDPVMWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNL7</accession>
    <name>A0A6S7HNL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061457</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005533">
        <property type="protein sequence ID" value="CAB4006536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNL7"/>
    <dbReference type="OrthoDB" id="10611231at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="19999" checksum="DA836A64E18CEA5C" modified="2020-12-02" version="1">MNLSLGYLLVEHIVKVIVAIMAEALEDLERSELENAAEVPNMDNNMTTCTCRGICMRERGRNFCPCKSLGSFCSSSCHGDNFGRCMNSRRAQESDSDQTDSESSMEESEEEDVGRRGRGRARGRGRGRARGRGQQRGGRGRGRRGGRGRGQLVEEEQDAENVAWRIARWECTTSTRSGTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6I3</accession>
    <name>A0A6S7I6I3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Importin-11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006193</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007560">
        <property type="protein sequence ID" value="CAB4012569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6I3"/>
    <dbReference type="OrthoDB" id="361693at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005635">
        <property type="term" value="C:nuclear envelope"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058669">
        <property type="entry name" value="TPR_IPO7/11-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10997:SF7">
        <property type="entry name" value="IMPORTIN-11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10997">
        <property type="entry name" value="IMPORTIN-7, 8, 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25758">
        <property type="entry name" value="TPR_IPO11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Importin-7/11-like TPR repeats" evidence="1">
        <location>
            <begin position="4"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="40065" checksum="59C4C98DEDDB4CE8" modified="2020-12-02" version="1">MLRCSILTTLTFIVKGLGSESVYLYPFLTPVIQLSTDVGQPPHVYLLEDGLELWSSTLKCASSMTPELLHLFNNMPHLLELSSENLRTSFSIIESYILLGGLEFLQAWGHLIVSTCNNILGTLKAEGNLMLARIIEVVFRMFPVEGPRLFESVLPKIFQAVVDGQEYGPLLAIYVSLFAVMLLKNKPNFDSFVQMLAEQYGKSANDLIGVFLDSWLERMDSISKTERRKLTTMALCSLLPFKQEVIHSRFAVIIEIAVDVLNELNKGDTYPSDYLLMNSDDDEDEEDYDSQEHLRRKELNAKDPVYTVKLTLFVRDTLRQCQQAYGDQNFQAMMASVESSVINELQSFINSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I728</accession>
    <name>A0A6S7I728_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033304</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007628">
        <property type="protein sequence ID" value="CAB4012779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I728"/>
    <dbReference type="OrthoDB" id="2148490at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="118"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="464" mass="52121" checksum="94DCADCE9F001241" modified="2020-12-02" version="1">MKENDNERLHADNNTDIANMFNEYFASIFTSDSDSNSERQDHSQVITIDNIALSEEEVMAVIMNLDSNKAQGPDNIPARLLKETAMQITPSLCALFNKSLRVGVLPSVWKLANVVPVHKHGEKTYVENYRPISLLSLISKVLERCIFNNIKYHVYEHINPCQNGFMPGKSCITQLIEVLEQIGRELDRGRQIDVLYLDMSKAFDRRERSRLVQFLSDQSIPANNRSRSNVETTPGNIRSATGVHPRSVVVLAVRESSPNAVTNSNIATFVDDTKIFKTINSISDAAVLQCDLSKFEKGSTNVNLELNASKCKVLRVTHKNPFPPHPDMSKEGALWFPDLTLPDYTGMLPVFLGVANLANIELHALKRKDPALKQRTFTMFFRLLSLCMIVVALKMPAAMSLYWSVSASFGLLQNISLKFPRVRRILGIPKTPSESAMPFKDMASVIAGRAAKFLEVQKDHMRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBD5</accession>
    <name>A0A6S7IBD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006713</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008947">
        <property type="protein sequence ID" value="CAB4016044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBD5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="929" mass="105340" checksum="C87E1E5B9337D9BE" modified="2020-12-02" version="1" fragment="single">ELVKLNNIDVLTISESWLNSSVTNREIAIDDYKIHRLDRLHKKGGGVCAYIKKNIKATVLKDLSKVSVSNFHQLWINLQCQKNKSIIICVTYRLPDTSLNCFEDLLKPNYVQALTLNKQILVLGDLNCNMLENGQERRALTNFSTELNLTQIIKTPTRITATSQTLIDVILVSSTALVLESGVINTSVSDHLPVYVLLKLKAPKMPACYITTRSYKNYNPSLFSSDLVTKSDRLLSILSNTNVNTILETFKDVLHSTLDVHAPLKTFKIRNRSCPYVTNEIKELMKSRDLHLRRFQLTRDEGDWVVYKEYRNNVKTKIKAAAKDHTFNEVREHKHNSRSLWKIINNIIPSKEKETQVYSKDPKTVAEDFNLFFTSVGRNAAATAESLAKDNNVALSNPLSNVITYPSDQLFNFQSVTCTEVQRIIMAMPSNKSPGPDKIGMRVIKDCLPIILGPLTHMINCSLMTSTFPDLWKISEVIPLLKEGDHEIASNNRPLSLLEVVSKVCEKVVLNQFSSYLKEFNRISSHQSGNRSLHSTETLNIFVTDTMLEAIDNKNLTALILLDLSKAFDSVSHSILLHKLSCIGASPEAVKWFQDYLTGRSQYVRIGSTKSSARPITHGVPQGAILSPLLFCIYINDLPGSIQSCNLDSYVDDSKLYKSFCIYDLEQTTINLEADLQIAAKWCLEHQLLINPEKTKFLVVGSRPMLQNVPTEISLTFLGKTIRPVLLAKDLGINLDSYLSYDDHISKLVSSCMRKLCQINRVKDSFDNETLKLVIETLVINKLLYCSTVWSNTSSNNINKLQSVQNFACRVISGVGKFDHITPALRELNWLPVEKLLLERDTVMAYKCFNGLAPDYLVDKFIKRSDIHDRSTRNHDLLDIPLYKSAAGQRTFNYRGVKIWNDLDDKLKNITSITIFKKKLREILLKESY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBJ0</accession>
    <name>A0A6S7IBJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006747</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004697">
        <property type="protein sequence ID" value="CAB4003691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBJ0"/>
    <dbReference type="OrthoDB" id="115435at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="378" mass="43860" checksum="3DC4DF52EBC351D7" modified="2020-12-02" version="1">MQDVPQHLHPYWCFRDDLTILDGLIMKGNRVIIPTSMRHDTLELSRLHDAHQGITSTLRRARRTVYWPKLQDDITEMVQKCDDCQRHGNKKSRIPERQIEFQGRYALVTVDYFSGFLTYDTLKVQTSEAVIKVLNSNFRKFGLPEKILSDNGPCFRSESFRRFCEQLDIGHITSSPYHHQSNGRAERAVGIVEHILKKSRSDVAITKALTTYLDTPVSDTLPSPAELFFNRRINTRLSMNMTPVPLTDQQKTGLNDKRSAHLKSTKQDQVKYMLNQPVWFTDDALDEWKPGYIDSKDSTPNAYWIINDASNRRLRRNTHDIKPRHTFIAHQRPQQTVFDSHPECHVDRESPPPAVVEQPSGWSEIPDSPPEIHHHHLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIF5</accession>
    <name>A0A6S7IIF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">THAP domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A078469</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005320">
        <property type="protein sequence ID" value="CAB4005811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIF5"/>
    <dbReference type="OrthoDB" id="8061911at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="180"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="230"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="189"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4005811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1168" mass="133631" checksum="6FF8615CEF1987E9" modified="2020-12-02" version="1">MDEQRTSLEMYNNALGLGTHDGVQAVGTDELVNEQLRRARSGERDDVAQFGAVGQDVYQRDKRERRPNIRLDQDAVNAERMLKLQRSRSGHQGHLTELNNKISVLLYDTYNVDSVKELLELFNRQWERFNLVHNEVLLFADNDRSTVASAMHAYNEQFARKTELLNRVIQYLQSHDREKTIPDGLETRSNASLSSSNSLSSAKSIASSKSREMRLKREKAELYLKQLCDRQSVEKDVERRKLEMRQAIEQQKLEDKIEIAKLEERYAVEEERRLYADERLYEHADFNERTEAPKFEYRYASPVKFTSSGTKGQFHFDEPKQNAKTNPVIDISDRYTGSNTIQQLAEALANLSHTPPIEITKFTGDPKDYLRFVTRFRDQVLSQPIQESKKLRRLMQYLDGKAKEAVERYEGMGSGALLEALSVLKTRFGQPYMIVDAFIVSIVKGPSVMNGDGKSLQKLADKCQSVLKTLESMKSLNEINTDHMRKIVSRLPYYNQSRWKDRANVILRERGSPPNFRDLTEFLQKRAQSENNPLYGNLKDSEKDNANRMKKREEPISSFATQYGFKRPGSAYEKRALVCHVCRGDHNLQVCKKFLNMPTVERRKVVLESKLCFQCLSTGHYKRFCKESRCQVESCNRRHHELLHLASIKVEKSKVDEVTKRDATVQTNAANVVPQVSRGTTALPVVAVKVHGADGREITTYALLDQASEASFIHTSLAKKLNLKGSRGTLSVKSLTGTISIETEKVNVVLESANQASHGSRLLARDVIVTDSLDVQLKVAPTRDDVRAWKHLSDIDFPEVELEDILVLIGADNPEVFITHEIRAGGAEEPWGFKYKLGWALMGPTNRPQTSQVDVHLLQRTNADMEDIAFKNEVNRFFYEDGLGVVTSIKKAIWGCIFTCMTTRAIHLEVAPSLETDDFINVLRQFIARRGTPKEIRTDCGTNFRGADKELKSATKAWSEDRLEDQLSQRGIDWIFHPPNAPHFSGVWERLIRETKRALKAILKGALVTEHVLRTVFCEVESILNSRPLTRSSEDAADATAITPAHFLLQRPAVVVPIGDFNEDSIIGRRKWKQAQILSNHFWTRWVREYLTTLHLRQKWLKPQRDVRVGDLVLVHEKKIPRGLWPIAIVRRVFPGRDNRIRTVEIKTKDTVLTRPIVNISLLEQCDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJ46</accession>
    <name>A0A6S7IJ46_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Reverse transcriptase RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A056666</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009689">
        <property type="protein sequence ID" value="CAB4017737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJ46"/>
    <dbReference type="OrthoDB" id="441285at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF47">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="8">
        <location>
            <begin position="64"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4017737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="30750" checksum="2A978F2919645390" modified="2020-12-02" version="1">MYELLKGQSSSTGHEKEKRKSALSGKQRQLSLRTSVEWTSIHQSALENLLNEVTSPPILAYPNYELPFVVHTDASQEGLGAVLYQEQNGILRVIAYASRTLSPSEKNYHLHSGKLEFLALKWAVTEHFRDYLYYAPKFLVYTDNNPLTYVLTTAKLNSTGLRWVGELAEFNFDIRYRPGRINTDVDCLSRPPLEIREYMTSCSEEISLETIQATISSVEAHAAGDVVWLTAVTDETKEMEADELFESTTSSRLKVIDILKGQQEDQTCSTVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INW7</accession>
    <name>A0A6S7INW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029877</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011169">
        <property type="protein sequence ID" value="CAB4020885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INW7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17364" checksum="90C3EE33928A5E69" modified="2020-12-02" version="1">MPKFDQLKENHLLSQSLVLLSPVFDHFFLTAIFSHPMVTISYPMTITTARLCPLCFNHFTANEIAAHVDECAHRFDPVGIVSDDDNDNDVENIIGISVLSGEPKNTSVDPTIKEIMEVISSKLCPNVNKDNTNRVSIRRKYAFQDYVGARKNPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISA1</accession>
    <name>A0A6S7ISA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029782</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011086">
        <property type="protein sequence ID" value="CAB4020707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISA1"/>
    <dbReference type="OrthoDB" id="2371919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24330" checksum="96B261816A78B815" modified="2020-12-02" version="1">MEGIHMLRDLLKNGDFLVKIDLKEAYLTVPIWKNHQKYLRFLWKDTMLEFACLPFGLATAPKVFTKLLKPVVGAFRQRGIRLIIYLDDTLIMAESHEYSITSCSLNPESPRGARLHSKLPDIITLTLPRDGISGGFDRFKRNDTPTSSRKVAKNLQKVSEIFRSNDNFCTRIVEIPGSPNLLRSGNIPCSYSLQASSKAKKYNFSLPSNLRSPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ITF5</accession>
    <name>A0A6S7ITF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transposon Ty3-I Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A032967</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006258">
        <property type="protein sequence ID" value="CAB4008872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ITF5"/>
    <dbReference type="OrthoDB" id="5985034at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="499"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="580"/>
            <end position="645"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="499"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="538"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="580"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4008872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="645" mass="73102" checksum="E69F553FA46B1006" modified="2020-12-02" version="1" fragment="single">GYATITEPLQALTHKNHAWEWMDKQEHALAQLRHVLANAPVTAYFNPEKTTEISVDASPVGLGAILAQIDPTTKVKRIIAYASRSLTTTEQRYSQTEREALAVVWACEHFHLYIYGKPVNVYTDHKPLVAIYGNTNSKPPARIEKWALRLQPYQTTVHYRKGEENPADYMSRHPSSHTEPCSRQEKVAEEYINYIATTSTPTALTLSMIAEATGRDPTLRAVIDAVQSGKWHELAKHPKVDTDTYERLKDELTVGTTTQVVIRGTKLVIPNKLQRRVVDLAHEGHQGITKTKSLLREKVWFPGINKMVEERVKSCLACQVATPEAAREPLQMSTLPDQAWDEISVDFAELSTGDYLLVVSDDYSRYPIVEVIRSVAAQAVIPKLQHIFSQFGIPGILKSDNGPPFNSEAFATFAANLGFTHRKITPYWPRANGEVERFMRTVKKIVKIALTQQKPWREELTNFLRNFRATPHSSTGKAPATAFFNRQLRTKLPDVRTNARDPAEIQETDQKAKRKMKKYADSKAYVKPSRVRPGDTVVLKRDPSHRKSETPYEPKPYKVISCKGSMVTATRGEKTVTRNSSFFKLVRQQNEPTEGDSTDGEHDNLEDTDGEPDNIAQAEEQQQEPHRYPQRVRAPPRHLADYAYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCY0</accession>
    <name>A0A6S7JCY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Golgi resident GCP60</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006636">
        <property type="protein sequence ID" value="CAB4009968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCY0"/>
    <dbReference type="OrthoDB" id="5839451at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000062">
        <property type="term" value="F:fatty-acyl-CoA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.680">
        <property type="entry name" value="GOLD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000582">
        <property type="entry name" value="Acyl-CoA-binding_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035984">
        <property type="entry name" value="Acyl-CoA-binding_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014352">
        <property type="entry name" value="FERM/acyl-CoA-bd_prot_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009038">
        <property type="entry name" value="GOLD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036598">
        <property type="entry name" value="GOLD_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052269">
        <property type="entry name" value="Golgi-PI4KB_interaction"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22973">
        <property type="entry name" value="LD35087P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22973:SF12">
        <property type="entry name" value="LD35087P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00887">
        <property type="entry name" value="ACBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13897">
        <property type="entry name" value="GOLD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47027">
        <property type="entry name" value="Acyl-CoA binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101576">
        <property type="entry name" value="Supernatant protein factor (SPF), C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51228">
        <property type="entry name" value="ACB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50866">
        <property type="entry name" value="GOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0007">Acetylation</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="138"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="172"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="172"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="196"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4009968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="42614" checksum="F7CC8FEB5AAA7722" modified="2020-12-02" version="1">MANLTITDDDSVLSDSINHDESQDVYKKCFTLRDYYKQCLSFYHKGKDVIKITYQDKIRLTALWKQASVGKYDPSKIPEVGYFDVVGNDRKIAWEGLGDMAKEKAMEEFCSLVEKIAPELEAYLEAQCREIEENRRKKLEEERRKREEEEQRRREEEERLERERLLKIEEQKRREEAEREEQRKKEESLKAEQERTSLIQAKPQVNGSPSIAPASLWSRPKVQEFIQHVRTDPGSVLVVGRGETITVRVPTHENGTCLFWEFATETYDVGFGVSFEWTLPSSEAITVEVHEDEDGETVQDGEHDETQKQRIDEILPTIRRPCNEEVMVGSHLYPGRGVYLLKFDNSYSLFRSKTLFYRVYYTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JDT5</accession>
    <name>A0A6S7JDT5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014628">
        <property type="protein sequence ID" value="CAB4027150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JDT5"/>
    <dbReference type="OrthoDB" id="5956630at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd22343">
        <property type="entry name" value="PDDEXK_lambda_exonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051703">
        <property type="entry name" value="NF-kappa-B_Signaling_Reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019080">
        <property type="entry name" value="YqaJ_viral_recombinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46609:SF7">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46609">
        <property type="entry name" value="EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09588">
        <property type="entry name" value="YqaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YqaJ viral recombinase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12617" checksum="43A86B97326F7A6B" modified="2020-12-02" version="1">MHAIGKPVVLFKSGFVVCKDAPFLGASPDGKVIDAGCSEPYGLVEVKCPETKYRVTPLDACSDPKFCSHEVAGIPQLKHDHDYYAQIQGQLGVTQAKWCDFVIYTDKGLSIERIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPQ3</accession>
    <name>A0A6S7JPQ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A011780</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020220">
        <property type="protein sequence ID" value="CAB4034555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPQ3"/>
    <dbReference type="OrthoDB" id="5983752at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043725259" evidence="3">
        <location>
            <begin position="23"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="278"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="229"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="312"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="232"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="319"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="343"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4034555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="373" mass="42349" checksum="6AC0A8A4870DA665" modified="2020-12-02" version="1" fragment="single">MNSKRLLFILLVLLSQALQISSNFDGLLGESDVFQNPTCQGGILAKNACECNKFNAECVSSTCQICKCRKNTRIYRSDVKKCLTDIEARDPWCRYQFVNTRADIIPTINLSKKCANNKCSKPINAPFDKTKHSCRFSWVNFLENGTWHEKSISKFEDTFHLQGSDYYSNGGYMYSIEWKGLKQSHVRKQLFQVSLECLDRDSMKESYCLMFRVRGKNNPILLSGAEIREKTTQPQTSQSQTISDLQRAAHTGRPTRLRDNRRRDDIQKAKIVVVNDHFTVILAAIAGALGTALIIIPIALFCRRTSRRRGSLAMRTHTRSASANSEQPSTSFAEEIDLEPQTSEETLSSYTSLKPNRGPPSIYQPLRKIHDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRK9</accession>
    <name>A0A6S7JRK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015952</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019408">
        <property type="protein sequence ID" value="CAB4033621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRK9"/>
    <dbReference type="OrthoDB" id="10066767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17272" checksum="B0D1112CB303A4EF" modified="2020-12-02" version="1">MAQGVEPKQTREYDRGRSKPTERSYRPRTWFTNRDGKHSNDDTRSPYSKPPWAVCGGNHGVWSCKVFSGLSVPDRWGVAKEKHLCFRCLASNHVGKDCTRSKPCAVQGCKRSHHNLLHEVVPKEEGEKSPLTREGAETRTHTSRNKSVSTAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVJ7</accession>
    <name>A0A6S7JVJ7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HMG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020705">
        <property type="protein sequence ID" value="CAB4035091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVJ7"/>
    <dbReference type="OrthoDB" id="8948380at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039598">
        <property type="entry name" value="HMGXB3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040648">
        <property type="entry name" value="HMGXB3_CxC4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17609">
        <property type="entry name" value="HMG DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17609:SF3">
        <property type="entry name" value="SAP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18717">
        <property type="entry name" value="CxC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMG" evidence="2">
        <location>
            <begin position="298"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="233"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="240"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="473" mass="52258" checksum="F281CE97497B8981" modified="2020-12-02" version="1" fragment="single">MSQRGRGSCPNCKAQYFNRYKPSKCGMCGYALGGTFEPSTKKVKYSPRAVEISKGIYSVTTSTRDDRCFVTTDGNLWFCSLEECKIARSVQHNSSRLAEFSCRHIDEVKFCDKSPPVAILKPDLDNFVCSETLRNSIQDVLNVAGSMPMASAAVQVSDAMFCAFGPITASNPLGYCHVRKSATELNHFICTGKDCRGFAAKGKQVRTKSMCMHIAILHSCFVTNTLDTTGDTNNNATFEAESSTEPGPTVNSSELTKRLSTLSLAEKVKILPYILPHDLLQSVAKRDACTLLGVGEMWPNSFIPDLENCQLCGSVLGDTCIHPGQSQNNPCYLLTELNPFKQVDIKVKFCSSRACYAMHQASVEKLGLFNISDKVLVSLDILLEFREFFKMEHPIGNVIPHAKLITLTAKCEESLVPSDGEMMYIEDLLYNGFYSFEMITERNLDDVVCGVCGVFPEICLGDGNEKNCCTNRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZZ2</accession>
    <name>A0A6S7JZZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A009267</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011406">
        <property type="protein sequence ID" value="CAB4021381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZZ2"/>
    <dbReference type="OrthoDB" id="7735550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143:SF424">
        <property type="entry name" value="FIBRINOGEN C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00186">
        <property type="entry name" value="FBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043714197" evidence="2">
        <location>
            <begin position="18"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="111"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4021381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27871" checksum="8F2EB4C4F871544E" modified="2020-12-02" version="1">MLTLSFFLLVFIARFKAEQCRNRYFKIVSSEGPSLPLEEIISSHIVERPVHVNCNFFCFNDNNVSKCVGFNFREKTKGKAINCQLTNTAKKRNHTEEGEWTLYQDVDAAKNENEEKKTSEVQPTSRKPISTTATPVTSCSSLFKSGERKDGVYTINPDDLGSFHVRCDMQTDGGGWTVFQRRQDASVDFYRGWQDYKNSFGDLNGNFWLGLDRIHRLTKSGQNILRVDLMDWTNDTAKKYMSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0N8</accession>
    <name>A0A6S7K0N8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposable element Tf2 type 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029164</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024745">
        <property type="protein sequence ID" value="CAB4038915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0N8"/>
    <dbReference type="OrthoDB" id="5981788at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="327"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="429"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="450"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="52665" checksum="9FA24A7EED463E7C" modified="2020-12-02" version="1">MKLQKYDFDLEYSPGKTMVVSDALSRAYLNNQSTEIDQPDLIHCIQVTFDNIPISDAHLTEFQLQQLKEYTLKGWSQQRDIPQTVKPYYNIRDEIVYNNGLLLKGQRIIIPSSLRSTMKAIIHQGHTGIESCKNRARMSVYWPGINAQIEDLVSNCSLCLTYRNKQQKETLIQPTVPNAPWKKVASDLFSLYGHDYVIVTDYFSKYIEIERLTDKSSATVVNKIKKIFTRHGIPKELCSDNGPEYTAACFKQFVKEWDFKHTTSSPHFSQSNGFVERAIQTVKKSLKKAHDGNKDPYLALLVLNTTPGNDNKSPAARLFGRQPRSTLPSLIQPAFPPPPPPKDTRAKTKEKYDQHAKDLPEIQPGTVVRIRAKEDEKWNQLGKVVEKCAEPRSYRALNDKGNIVRRNRRHLIPCKDKFQIRNDFDYDDLEVTTQPSSPEPPNEIVTRSGRVVRKPTRYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K129</accession>
    <name>A0A6S7K129_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046966</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024866">
        <property type="protein sequence ID" value="CAB4039026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K129"/>
    <dbReference type="OrthoDB" id="5982966at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12812" checksum="5DF249AB32E2619A" modified="2020-12-02" version="1" fragment="single">SEWPRDIVTTATNESEAEAKATRAVFKLAVEPTNPPDGILTKFSLNKAVRVNAWISRFVYNCRAKATKKETRSGPLTTQEINDQHSAYVKQAQAILYDKVSDDKQRLGVQMNED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1Q3</accession>
    <name>A0A6S7K1Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013772</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022947">
        <property type="protein sequence ID" value="CAB4037321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1Q3"/>
    <dbReference type="OrthoDB" id="6017043at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="325" mass="37261" checksum="4D001B6EB3A914E8" modified="2020-12-02" version="1">MSEDKDEITRLNPVARAILQGLYDTESPLHKLLGLHYVLKAIWNNVVDHWKSRIKKTDENSHPEEADTSYVSFVKLRTQGVRAFFQKDVVVVFPKPSKININMMPFVMGRDFRETRLPKYLRHYWDQIIKHCIMDSEVGKIGYLTIHESYVDEGTSQRRPGIHTESPGVVMLKDSKGCVMNRYFGWGGGNSFNFKEMELEGGIFMASNVENSCRVWNCEILRPEVDSLDVVGKHGDIEHLREFLPADSETMTAGHVYWITDRTPHESLPLKKGIYRQFFRLVTSLVAAWFEDHSTKNPNGVVPDPKLTKIVKGSKFDGICCVIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6B2</accession>
    <name>A0A6S7K6B2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A051794</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024937">
        <property type="protein sequence ID" value="CAB4039088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6B2"/>
    <dbReference type="OrthoDB" id="5988672at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000002">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF454">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="128"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4039088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="27474" checksum="D53A85346BD230B7" modified="2020-12-02" version="1" fragment="single">MKEVEVSIGTLTISHQFMVVGMRNTCILGADFLKSGRMVVYIANSKLTWPSGEVALVIETTAPTVNKLSVLLDNYSDIFVSGPNDPLGRTTVAEHSIDTGDSRPVKQRPYRIPVHLNTVVNKQVNDMIERGVIRSSNSPWSSPIVLAPKKDGDYRFCVDFRRVNSVTKKDAHPMPRIDEILDQLGGARYFSTLDLTSGYWQVPLREEDMEKTAFSVGANHYEFTVMPFGLTNAPATFQRMMGNILM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6I6</accession>
    <name>A0A6S7K6I6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037531</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012482">
        <property type="protein sequence ID" value="CAB4023401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6I6"/>
    <dbReference type="OrthoDB" id="5980049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="34773" checksum="1B26DF7580550021" modified="2020-12-02" version="1">MQERDAHKLQSLGCNQRSKLSIMSDIYGTQNDVLLQSGLADALDEDDFDVKLESLKTVWEQRAPGFNEWFRKNRSEKFKASLVLSSRQSLGIEGRFYTNGLELKHKLQKKRLREAQVPREVDPVRWNRWGPERQTQHVNSFRQFVPKSYDSFKKPSSAGQKTSPKSKKRRAELPEAELFVDRVTPSNATPSNSAVSPLHLAKVGHSSRWQVTQSSLARPVDILNPDRITGNQYDLVHRDDTKLCPKGVQRCEQCRVNFNQADKIIVKSVGIRERRSMTKILLSMQSPFRQELSGFSQQVVKTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7D3</accession>
    <name>A0A6S7K7D3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010411</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012626">
        <property type="protein sequence ID" value="CAB4023682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7D3"/>
    <dbReference type="OrthoDB" id="5945905at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24932" checksum="C92CE1FCDCE20593" modified="2020-12-02" version="1">MDEEEFLLLWTASKYKNPDFPVECYTFFNMDEKHPSEVNYKAEFRYEKKDIPYMAEVLRIPYEFKCRQGTVCDGMTGLCIVLKRLTHPCHFGDMISSFWLSVPELCMIYNTAIDRIFNEHSDLVSQWNNTFLGAEKLQNYVLDSVAAKGAALRNCFGFVHGTKNEGMTPECWQTLCIYGDPAYPLTTHLQAPFRQVPITAETGAFNKSMSNVRVAVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFL4</accession>
    <name>A0A6S7KFL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044771</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028570">
        <property type="protein sequence ID" value="CAB4041594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFL4"/>
    <dbReference type="OrthoDB" id="76173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005815">
        <property type="term" value="C:microtubule organizing center"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031023">
        <property type="term" value="P:microtubule organizing center organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007052">
        <property type="term" value="P:mitotic spindle organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071539">
        <property type="term" value="P:protein localization to centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007224">
        <property type="term" value="P:smoothened signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026123">
        <property type="entry name" value="STIL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15128:SF0">
        <property type="entry name" value="SCL-INTERRUPTING LOCUS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15128">
        <property type="entry name" value="TAL1 SCL INTERRUPTING LOCUS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="192"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="28103" checksum="9DB3AA67002DDF71" modified="2020-12-02" version="1" fragment="single">CQVKDLLSEQVSTKQEDSTEELHHTSQSAQVPTREVVVKATLKQLEKIKHSEQDGCQQSSRRLETESSSVFSTHRRSLSTSFIPEHPRLNYMSMSVDDTFDEVTYIDEVALKYLSDEELKQFKSELRPSTAAVKRSFTRTVRFGSLPSDNERRSLSRRNLREVDFTWNNLSFCTKNYLTKYNLVEGHVSFTGEGDGQASTRHQKENSPETSIEPCKPPFPSPARHSEESSDILDIKRLKNLPKLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KL72</accession>
    <name>A0A6S7KL72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069009</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032770">
        <property type="protein sequence ID" value="CAB4043624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KL72"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11759" checksum="46130CDC094043E6" modified="2020-12-02" version="1" fragment="single">MSSTLEQDRNRFWKLLNLTKKNKPSDVNLEIGDEMVHDPHKITGLWANYFEDLHEFKRYENENIFDSGFLKGIKSEIHRLDLLEDESDTVLAQPFTLYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KP22</accession>
    <name>A0A6S7KP22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007403</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042832">
        <property type="protein sequence ID" value="CAB4045878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KP22"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="52" mass="6150" checksum="C93D3D441E02F91A" modified="2020-12-02" version="1" fragment="single">MESDQMLFRERMLSEIMELKTKVTELDSTIQVQNAEIKQLKSENERLLGMHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LLK6</accession>
    <name>A0A6S7LLK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026356</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020044">
        <property type="protein sequence ID" value="CAB4034349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LLK6"/>
    <dbReference type="OrthoDB" id="5986176at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424">
        <property type="entry name" value="PROTEIN CBG23806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="644" mass="73226" checksum="A0477179C7189398" modified="2020-12-02" version="1">MSAVLKAFNLHKLKQKISFSTRTCINHPRKAVTEEENIVLTVNIPHEYLEQLYDLKQDDGKLTGLSYVEVLNAFISQNALEIKLDCERINSIIRRYCGEIKTKSKRLRGRVRTEYLAKSKCISVYEKEIARVSEAKNELESAKAVCDTLSKEKYNLNEQCEILSKELCTLQGAKKETERKLECVTKGYQEELNKNEALKQYIEKMGIPDNCENTGKCVADVGKRQQHRKIKELKTQVERTLWFANTYGLHLESLKLSDNSGAEYELEFTAGGTKKSYKDLPEAEKQKIKEVLLIQDKFCVGEAAYHELTMIPAGQTLPRSYLVKQCKDSLNQLCHIERTPGENEGAQVNFYDALRNAIQNHMRTCTANGLSPPERYNIKLSGDGAKMTRLTGFIVISFSILNSGDAVMSPKALNRDKADNHNTAPCDHTSTHLDNLVNAIQSCGISFNVWEKTDANGRASGIYDFTSLMSTDKKLLLEKLPAKLNGVITPATCNEVIKLIIQQYSDKYVIEKVYTTIGIDGYVGVEKLNDNIRRILLQKSNKWDAAKDVLMAEERKKVLSDLEREPRPYKKKADNYWLDGIKESRRKRPRLCDEEDISDGPEDISSLTPEILKLRLKDMGITTRARKLSRLLDMYTVALQSQKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBQ2</accession>
    <name>A0A7D9DBQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107339329</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080769</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000437">
        <property type="protein sequence ID" value="CAB3981875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBQ2"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11448" checksum="E68BABA428ECABFB" modified="2020-12-02" version="1">MAQKNAKEIAKGVVEIGNIIQNQSPNTKVVISELITRTDTPENRRKVAEVNAVLLTNCKKNKWGHITHANIQAKHINPYGIHLNKAGTPMLAKNIISFLNEQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH35</accession>
    <name>A0A7D9DH35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Furin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022367</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000870">
        <property type="protein sequence ID" value="CAB3985413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH35"/>
    <dbReference type="OrthoDB" id="1731983at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004622">
        <property type="term" value="F:phosphatidylcholine lysophospholipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00229">
        <property type="entry name" value="SGNH_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383:SF5">
        <property type="entry name" value="SGNH HYDROLASE-TYPE ESTERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="2">
        <location>
            <begin position="253"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="225"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3985413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="410" mass="46026" checksum="910BF584F9FAF3E8" modified="2020-12-02" version="1">MALSTSGQQQDLPGEETDQGVEAVKSIQNVHLADHESKKEENTLNIESKHSRTNNNIDILFTKLERNPDAEKEKEIDRLREENCKLKTDNAELIHRLNEHVNTISELNNIIKVAGDEKASLLTAIRLIQSDDINVRSNNNESQVWTRIESKTQGKTKNQTPSRRINQASNQILEPNQYASLAVDESNENKDMDHNVTPSSTHIENSTNPGRRIQHQKEKQRYSVEPTQQHNASSSKSTEGPIAILGDSMLKKLSPSRLRRSTGKKIIVKPFPGATTSDMKHYIKPTLEKNPQLVVIHVGTNDIQHKEPEEIAKEVESLCRTIMVNGLSKVAISEIIQRADDKLNTKVKKTNVLLAKVCKNNNSSLISNSDINTSSLNASGLHLNDRGAAILAKNYIDFFANDYIHHKYAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXT8</accession>
    <name>A0A7D9DXT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A023513</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002895">
        <property type="protein sequence ID" value="CAB3996553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXT8"/>
    <dbReference type="OrthoDB" id="10047254at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="5"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="292"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="309"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3996553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="364" mass="41810" checksum="748D1289AEE92AFE" modified="2020-12-02" version="1">MENIRVSQPMELWAMDILGPLPITARGHQYVLVMTDHFTKWVEAVPMADQKAETVARAFIDNVVSRHGVPVKLLTDQGRNFESELMKEVFKLLGVHKLRTSPYHPQTDGQVERFNRTLKAIISSYVNGHHNDWDLHLPLGLFAYRTSVHSSTRVSPFKAVYGRDATTPLVLLGSTEKPKTRLIADYCAELEFTLKEVHATVAEEIKKAQTQQKQNYDARNTVHQTEILRPGDIVWLHSTVIPKGRSRKFHKPWIGPYVILRCQGRLNYVIRPKSGKGRSSCVHRNRLKLVQNQTDDINEQDMPSPLSTKSEKTQEQRVAESPIVHKEVEATNMVPLRRSTRQRRPPDRYQDFNLDELEIEDALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E1L8</accession>
    <name>A0A7D9E1L8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-amino-acid oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036718</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003590">
        <property type="protein sequence ID" value="CAB3999439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E1L8"/>
    <dbReference type="OrthoDB" id="5980077at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amine oxidase" evidence="1">
        <location>
            <begin position="85"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20331" checksum="50190FBAD2D97337" modified="2020-12-02" version="1" fragment="single">HDIERVLKLNNKMADFSTFKYISLSPIDIQIIILTKTIAGNSWAVIVTTTRKSLQAIDNFIISPSTKIILQTKRRFWEDKKYNIQEFHPEIKEEHMIEKHFVRAWSNQPSYQGAYAFLKARQFNTVRTLREPMGNVHFAGDALSIAAGWIQGALESGLKAAYQVYARGKKRTTGEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3V9</accession>
    <name>A0A7D9E3V9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043912</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003249">
        <property type="protein sequence ID" value="CAB3998013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3V9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="30371" checksum="383269655C36B72F" modified="2020-12-02" version="1">MNSDDINFQEPPSQRGLQFNDAILNERIFSSKRSRAGFLGVITRVRGQIEILLSNVENAQTVQIQLHRYDDAWRKFEDTHNDQVYQRHQVNPHDHQHKKKRVQAAKAKLALRLAEVERHRVLEGEFRVQDIERKQRELETQQKLEEEELERTRRIETLKQAALANLEAQLQKQFDSYVEVDIELETEIGGRISSEPAEVISLTHLHEVQNPDKVTTDMATRYSSRTDTTYPSVFNSDPQHEGNHFPQRQLQLTNRLDQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAT3</accession>
    <name>A0A7D9EAT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005383">
        <property type="protein sequence ID" value="CAB4005999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAT3"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="681" mass="78518" checksum="F2D48C09F2BF151A" modified="2020-12-02" version="1">MKAQPSPSKPDNLHIWKRDLRDSRIRPFGRYITTFDWSPILDIHDCDTKYKKFNDTMTVMIEKFFPLERIKVRKCDKPWMTSSIKSAIGRRQKALHESGKNSDIYKYWRNRVQSCIKVARKIYYMRSVEKLKNSNPARWWKEVKAIGGLSSKNSWYSQLFSDDVRNCEELAENFNNFLTALTSHFDPLTLDEIQEGLEVPNHYLVDAQQIYMKLSKIKTTKSPGPDMFPNKILKTFAFELAPVISDIFNSSMTQGTFPTALKRSIVVPVPKVSPPKSIEDDLRPISLTSQIAKVMEDCTLDNFFPEVVNKLDTKQFALPKKSTTHALVYLLHSILVALERGSCTARLFFADFKKGFDLVDHNVIIKELTLLGTHPSIIRWIKAFLCDREQCVRVGTSMSSWKKTNGGLPQGTKLGPLLFAVLINSLLKNWPSRIKFVDDTSALEIIPRFSSSLMPLVVNEISDYALERGMELNYKKCKQMLINFLKYKGSDDENPIYVAGKPVETVSSFKLLGVWISNDLSWNTHVDMVLKKANSRLYALRLLKKAGLQASDIVQIYISFIRSRIEYASPVWSSIPKSLSDILESVQKRALRIAYPDLLYDEALEISNLQYLSTRRDISCKKFVESLRRDVSPYNPLTQIMEIRPGVKTHDYDLRNDRTAEQPLWSETTERLKNFVTRKYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEJ1</accession>
    <name>A0A7D9EEJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084256</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005764">
        <property type="protein sequence ID" value="CAB4007324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEJ1"/>
    <dbReference type="OrthoDB" id="7616861at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="95" mass="11332" checksum="729449AD2BAB1F3D" modified="2020-12-02" version="1" fragment="single">YLQQESEKIQKRALAIVLPECTYQEALKKTKLETISEHHEILSMNLFDQISKDRSSKLHSLLPEYNTNTNYNLRKKRTFEIPLVKTRRSDLRTRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EN04</accession>
    <name>A0A7D9EN04_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Iodotyrosine deiodinase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Halotyrosine dehalogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A077755</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the dehalogenation of halotyrosines such as 3,5-diiodo-L-tyrosine. Likely to also catalyze the dehalogenation of other halotyrosines such as 3-bromo-L-tyrosine, 3-chloro-L-tyrosine and 3-iodo-L-tyrosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>2 iodide + L-tyrosine + 2 NADP(+) = 3,5-diiodo-L-tyrosine + 2 NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:32479"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16382"/>
            <dbReference type="ChEBI" id="CHEBI:57506"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.21.1.1"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="6">
            <dbReference type="Rhea" id="RHEA:32481"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nitroreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008012">
        <property type="protein sequence ID" value="CAB4013763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EN04"/>
    <dbReference type="OrthoDB" id="5980588at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140616">
        <property type="term" value="F:iodotyrosine deiodinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006570">
        <property type="term" value="P:tyrosine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02144">
        <property type="entry name" value="iodotyrosine_dehalogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.109.10:FF:000004">
        <property type="entry name" value="Iodotyrosine deiodinase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="entry name" value="NADH Oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050627">
        <property type="entry name" value="Nitroreductase/BluB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23026:SF90">
        <property type="entry name" value="IODOTYROSINE DEIODINASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23026">
        <property type="entry name" value="NADPH NITROREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="FMN-dependent nitroreductase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0288">FMN</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="10">
        <location>
            <begin position="105"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00052524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00055792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00073999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00079409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4013763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="33437" checksum="84E258AACBBB3712" modified="2020-12-02" version="1">MLDLKDKIELYAPFLSHYWLHLLSVGISFVIAKLIKGYISKAGAEKDKSNTISMDEAIAQDSTEDLGSDLYVLDEGKHIPYEHTNRMSETEMLKQAQDFYNFMNKRRSVRFISKEPVPSLDVIKTIVHTAGTAPSGAHMQPWTFVVVSDAKVKSEIRKIVEEEEEVNYRKRMGSRWVNDLKALNTNWCKTYLEDAPYLILVFKQVYGISPEGKQPHYYNEISTCIAAGILMTALHHAGLVTVTTTPLNCGPRLRVLLERPVNEKLLLLLPVGFPTADATVPDLKRKSIDQIMVHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENA4</accession>
    <name>A0A7D9ENA4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LIGHT-DEPENDENT SHORT HYPOCOTYLS 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069021</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007544">
        <property type="protein sequence ID" value="CAB4012527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENA4"/>
    <dbReference type="OrthoDB" id="10507005at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="8673" checksum="7EB0AACC27FF7951" modified="2020-12-02" version="1" fragment="single">MGADDCETLHGFRAGCAITLALTGADLCEIMDHVGWNRRHTAPYYMQLAKVLRAEGASATLADPDVINVVNPWQDVNTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EW12</accession>
    <name>A0A7D9EW12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Kelch 12</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059698</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009927">
        <property type="protein sequence ID" value="CAB4018262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EW12"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46344:SF27">
        <property type="entry name" value="KELCH REPEAT SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46344">
        <property type="entry name" value="OS02G0202900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="10650" checksum="DEC17A04DBF907CB" modified="2020-12-02" version="1">MATVRHGGTMLLIGGVENGKASKKIIEYDFETGQSKVLLTMKTERAYCSCVCRGNTLIVIGGAKDDPAAVDCFNFLSNSWKRLPPMAEARILASAVVVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EW45</accession>
    <name>A0A7D9EW45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060267</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009233">
        <property type="protein sequence ID" value="CAB4016720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EW45"/>
    <dbReference type="OrthoDB" id="68437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035082">
        <property type="term" value="P:axoneme assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060294">
        <property type="term" value="P:cilium movement involved in cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039586">
        <property type="entry name" value="CFAP46"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15977">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15977:SF15">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="476"/>
            <end position="509"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="658" mass="73693" checksum="B3A9498F764891B5" modified="2020-12-02" version="1">MSIQGRLPACVIDNGTGALIECHIDAGRKDDASQVAGAAAQFTKTNVPNLYKDVLALQIQYKLTEYGRLSKETKSSPDLHLFFKIHRLKVQLAGDEKADVGLDLAKFYKQLTGMFETDVSGTSTEFSEKSSTNVTRTSTPVAMETNDRLSLILELAKQCMCYGACRLAADCLDYIERNSKEPSVNLVIEFLRCELMVKSLAEKQENYSQSVVQVRLEAIEKLEQYLMTALRFGDPHVIQVGCTTMWNLCLPLLQFNLRHHVRKPLRILADALESVDSLNSLLRCQIHTELAKCEESEEQVEQAMIHLRKALSLDDDGLYTERLETLLTRLQLRASLYTTPDRPEDLAAMIIEQARSSSDSGTSKMKRASLVKAGNALAPDAFAMVLESESKDISSHGKQPPSLLSKLAAKAEHFEKAVGKAIGHLKRLGIHNDQERVRIWADLTKTARKQQIWDVARVAARFCLLYDDERWSLKRETKQTGEDEGGYVEEDKNNEGRSSSGAGSLKKGEGQSKRFSYVTEEAKYNTEKDLLRMLAEVHFINAEALVQYLKCQGVELCDSPTFPNSEILSSQEPAGATEDSPQWMIYCDWLGSLSQTAISEFQRASELGSELQEMWLVCNSAVYLLNYTTHLVAQQRHRELIPILPCVLKNLRSVGHVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HBY3</accession>
    <name>A0A7D9HBY3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075285</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000130">
        <property type="protein sequence ID" value="CAB3978650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HBY3"/>
    <dbReference type="OrthoDB" id="7476844at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="410" mass="47659" checksum="08B9B3B63B5EE4A9" modified="2020-12-02" version="1">MPLENIGNDRIIVIKVKLPNQKALFVLGTYLPSINDSTSSYREYINTLEDSIAHLKSLGAVVLAGDFNAHIGNHGGPRSFKENCVNGPIETFHSNQGSTLSTTDHIFVNKEDLPLIKWCYVESDNCRNLSYHLPVICSWDVQLPLLTTRSKTAHTSLSWKSLLNETVKIRYQNSVKRRLESLENNGEDSVPYNIDTIEAEIASVTNLLHSAAQESIPRKKFRKNRRPYWKEGLNEFHKKSRECRKRWLQNGKSQDRENIYYREYKEAKRLFREELRKKIYLEEQKQLESLEKHYETDRSTFFKITSSIRKKKEVSIQMLEADRTLIYDPEEVLSVWKKHYSDLFTPKTNPKYDDEFRRFVEAKITEYESESFNAENDPLDNAFTEHEVLDVCSKLPNGKASGPDGLTYST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HDQ6</accession>
    <name>A0A7D9HDQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">PREDICTED: uncharacterized protein LOC107342022</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A023255</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000337">
        <property type="protein sequence ID" value="CAB3980925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HDQ6"/>
    <dbReference type="OrthoDB" id="6512366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="THAP-type" evidence="6">
        <location>
            <begin position="5"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="587"/>
            <end position="617"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF05485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3980925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="634" mass="73217" checksum="61B37027C7100CB1" modified="2020-12-02" version="1">MPDRCAVYGCSNQASLENNVSVHRIPFLNDDRVEAKKRRKKWVDFVMTTREKEDLTLKKYCARLLRDEIGILAYPTLHLKHKTKKEPLSRDKRMQKRNVITSLASHSEQPHTKKSKGEQHPTVCFDENEHLDEFCDENFLVEGPSTQLKDVEVQCCLVDKSTRHYKNMWATAKYKLQRCRNELKKCKVKLGYIGRLQYATYKYCERGHQREKLFPAILLHWKKYQSCMIEQLKSSGKQLVIAGDGRHDSMGHSAKYCAYSVFCCTVPNIIDFSIVQKNEVGNSPAMEYEGFKRSMDNLLKRNIPISTFVSDRHTSIAKHMREKHKNITHYFDLWHLIKKVSKVLKKIEKESGCEAISQWIKPCTNHLFWSVTTTFSGHGLVMLAKFKSFFSHIINRHSELPDRLFTKFAHDSNIQDRKWLDEDSITYIKMHAALTKRSLVPGIKKASPLEQTSCLEGFHSVLNQFSPKMLSYSYPGMFARHALAVIHFNINLKRYVKEINGVKQVKLVYPKFKNGEAVVRNVTVKPNFNYVEEIYQTTLCAIRYNTLNKAEKGLKLMTPLPMSSMLNKQSKDEAIQKHSARKAMTTIDVPPTNPVQEAPVSQDQTTGRAKPHCSICKQPMKGHKNVANCPKNQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HLP0</accession>
    <name>A0A7D9HLP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043148</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000880">
        <property type="protein sequence ID" value="CAB3985503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HLP0"/>
    <dbReference type="OrthoDB" id="5988869at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22758">
        <property type="entry name" value="OTU_232R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003323">
        <property type="entry name" value="OTU_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050704">
        <property type="entry name" value="Peptidase_C85-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12419">
        <property type="entry name" value="OTU DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12419:SF11">
        <property type="entry name" value="OTU DOMAIN-CONTAINING PROTEIN DDB_G0284757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02338">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50802">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="186"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="220"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="252"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="272"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="300"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="784" mass="89666" checksum="CFEA41988D490BCA" modified="2020-12-02" version="1">MFRSKESKLLPATKCIIQKLETYDKYSLLLCGDIESNPGPVINTSMSVLTARLARIGLQPVNIAGDGNCFFRSVSYQLYQTEDCHAQIRALAIQHLINCPEHFIESNTQQSWVQYLQDMSMLGTWADHIIIQAVANANSLRIHITESAPNFCESTVVSSVYVESGENVRDIYIGHLDELHYVSTTPTAQSVSRQVENEKANKLQPKPNSQNLQTKSRKSYMREYMMKRRKDENFKKKENERKKTYNKNYRKANPEKVKELLKKAAVTYRQSNPDKEKQTKIKYRESNPEKTKDSFKKATATYTQSNPDKVKQTKITYRKSNPKKIKDSSKKSTVTYRQSNIEKSRESSKMSSRIYNQNYPERLKNIQKRNYIKRKFAQNENEAEMNEQKRLKLNLNSQITCETSSQSENNSTEARSPMTIAQATETFHKNISVGPEHICTCCDQLWYRSSVTECNPSLYKSCSNEILNLCLTGVKSIDNTEWICGTCHSNLKDGKLPSCAKANKMTFPEKPDVLNDLTSLEERLISPRIPFMQVRELPSGGQLSIHGNVVNVPADVNTTVSVLPRPINESRTIPIKLKRRLGYKHHYQFQNVRPSKVLEAARYLVCNSEIFKNEGIEVMDNYETNPLNNVNEEAWSEFIANNTEETSDIVSNEVNIQSQENVATMQASNDPIDNDTDDEWCEPTERASGVMDTLLQEPDITQDGDKIISFAPGEGNRPLGIFIDKDSEFLSFPTIYCGKRQADNSERLVPVHYSTICKWELRSQDRKVAQSVPNIFLQIKKITD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQ27</accession>
    <name>A0A7D9HQ27_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF6589 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022891</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001126">
        <property type="protein sequence ID" value="CAB3987145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQ27"/>
    <dbReference type="OrthoDB" id="5966867at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6589" evidence="2">
        <location>
            <begin position="445"/>
            <end position="922"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="111"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="147"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3987145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="989" mass="112906" checksum="6B2EA145C20371DE" modified="2020-12-02" version="1">MSEICILCLNVIVKINEKHRVEGKGAFKVIPELESFSFKVERVSPFICAGCVKKLKKRRNLITQIECIDEFYRTIQTKSTCSSSSSLKRTSDISLDSVGIKIHCGNEGERSSSTSTETIERPSSSSRCSSPVRPDNIAPQWPVSPIKHRENSEEGPKSTNVYVKVEWPSKNAERKLPGDLESLGKMLVRGTYKQIANAAWKNTNIKKQLQLLMLNDINRECSDLCSRKNPSCLRSPNKENMLKFSIEHFNKELKERAPLTFSVLVAACVNPRSRSRANKNGLNIETFWSPAVGMAAAVCLRNRSRFMNALQLLITIFNYHSGWQATLARLASLRITTSHTYLYKKLDEYGAGYRDEILNAVENQCLFLKRNPEVVESDDQQSCDHGRKITIDNFDYRQNVHHMTEEHQNIDVHHVTVMSTENRIGAVDFSDQKKEDGIMKLENGKFIPSDDDHQLQRKNFITLVGRILVANIPCLKFLADVVTSHIPHKYSSQMAKKTNTTFMGLIYENENDADGITNVIKELHQYVPHGQNEDGTDGKYGEQGIVGDQLTVERFVNGHASIANGFTEKEQCTGLHAEVADWHSGNRFLQLAFQNLYSASSGYDKCTLYADRTFINRRNVKSDVSSAVNPCRQFFTLEVHARVIAATLKVLNMANLEEKPGIPFPGDESSKEDKKNYLEFVCAKVVDMFVIDESKNERILECLDCINLCEKAKALSLDDNNRYRCRYEGCQKSFAKYGKRMKDHESNHNPPILEIIEQSVVVDTTLSDEEQDDMFSYQKALLEYGMLILNFWDAISEGDGERIMRCWRFFLLYLRAEGQSTVKYSLEALYLLCQINVLLSPQAAQRLIWNRSVKTKNGLGGNIPLDLQLEFYNRMMKAAVKNVGPNASKTSLNRIAHSMGITNELMKQFDHELSVYRRSGKHITTSSQNDLLKIVDELLLERAFYMTEGRRYHHFKNMKQSLLHGLDLQKLFSWINEHKENLVLHRRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQ63</accession>
    <name>A0A7D9HQ63_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053577</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001285">
        <property type="protein sequence ID" value="CAB3988138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQ63"/>
    <dbReference type="OrthoDB" id="9993828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="986" mass="110922" checksum="135D21356B9EB379" modified="2020-12-02" version="1">MKKTLETGALQSKEDLNPEKESFPNESDRCSVSTFESLSINNSAIESFDDSLLDSYQDLEEKPMSSSVQTQELLDTEVHDEQSLDVHKPSAKSQSTLLCYSTPQSNTSEEDLTLQHVMGAISNLSIKMDNISKQHASLTELAFEDSEVRTSVNKIREANNIVELNDASPLLQWFYDEITETAVLRCLPCSQLQQEAEPSLAKLTPLQAQRILNSSGSGTLATGIFLKKDKTQALIKGHNATWYHQKTACIEHLCLIGFGSKQHKRAMEIYKQRKLSKEKRATSTSNIFRAAIVDIKMGAAGKHLETLVSFLACCSANVGSIGHGRNNFNDILSCLESTVNARMKKWLMEPLTSTLLPPHYWATVDKSTPSRTTNQAVLVVARDDTGTPCPIPVAAPVVYTEFQAATYDKLADILLQSIEDNFAKDVITRLCGVATDGPYYQARAFRDQLVQRSFGIEAKDCEDIFLPITWDAAHLTNLGVLDVKDSQTPSGTHFQKFIKRCNVFNTLLANGKGFAFLQMVDQDARRPVSYATQRFTSSSYDQWVKIEKSYNAFCKAFDLLNPHRDEEEETQYKILGSDFVADLLAFLDTLEPIVNLMLRVQSLDCPVWKLKLWWPKIKSEMEKGSRGDQAFYKRLAKVKNFIRPGGQFKGVDLLEGWLITKIDSDRDTPGNSEKLYTWKMREEEDIERDHNQFALDLMNAVDKRINSTVTKPYLTTLEIFDAGRLVSLQCGRRQDNGNVKLSVSEGEYESYGVEESKAVMKSISNLPHIISSGMDFDERLAHRNMLRIKEAIFAGVWNCFCPLWFRDEHNNPLPKKDADLIEITPSNSDTLFDVMYILKYSDGEEFTARLHEQSVYSSFYSQEEVYSIAKAPSCVMIDVVLAKGGPEAIAESYYSAMRAQQQSGGQSNDTLARRTKLNWCLPSLKKCESIIRESVELYLKGDGPNGKIKAHRITTFLSSRANMYNVSKVVDRVDSATGRCPFLADI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTS5</accession>
    <name>A0A7D9HTS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002177">
        <property type="protein sequence ID" value="CAB3993071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTS5"/>
    <dbReference type="OrthoDB" id="6132182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01450">
        <property type="entry name" value="vWFA_subfamily_ECM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050525">
        <property type="entry name" value="ECM_Assembly_Org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020">
        <property type="entry name" value="COLLAGEN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00453">
        <property type="entry name" value="VWFADOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="279" mass="31009" checksum="4754D055ECCEA5C7" modified="2020-12-02" version="1">MGYFTFTFLICLVVILPSFPCKGARPFWRRPTNKPKPTLLPPIDKDPEFYKKLREEIPPKNVTAKKVITNILRIRPGGKRQVTLEDVVIVMDGSGSIGACEFNNGKKAMKNLMGFEQPDVNAKYAMVTFSRTVRRDFNFLSQSDAVARISTVTFPSGSTNTQAGLAEALDLFNKEGRGFLSRKLVLLLTDGQSNVQKHKTLPNAQKLKDAGVEVFVIAVGGQHIRGIDEMANMATFPPKDFLLRVEKVGDFLEVVNLAIKTVAPGKYKILGDKYKSPCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUZ7</accession>
    <name>A0A7D9HUZ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021623</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002073">
        <property type="protein sequence ID" value="CAB3992554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUZ7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="8262" checksum="62EB1B5AE27192B2" modified="2020-12-02" version="1">MPMDACCNSLMLNSSQCGTNLRLLGCLDKEHWECLMNQRHGLEQLVVAEKSRPMEKRYSIYWEWIVGSEVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I325</accession>
    <name>A0A7D9I325_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycerophosphodiester phosphodiesterase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080191</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002768">
        <property type="protein sequence ID" value="CAB3995963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I325"/>
    <dbReference type="OrthoDB" id="197419at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008889">
        <property type="term" value="F:glycerophosphodiester phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006580">
        <property type="term" value="P:ethanolamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070291">
        <property type="term" value="P:N-acylethanolamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006644">
        <property type="term" value="P:phospholipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46320">
        <property type="entry name" value="GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46320:SF1">
        <property type="entry name" value="GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="35958" checksum="3DEAA235E1917E8C" modified="2020-12-02" version="1">MADILLTFLGIFFTFSALLYGAHHFFRFQDFDQVRVDKFFQKNGANTKAFVIGHRGSTMEAPENTLAAFRHAAENGADAVEFDVDFTKDGHAIVIHDATVDRTTNGTGGVCDYTLQEIRKLNALGDIKNSENYSFTQVPTLVETIETCLELGIKMFIEVKAYQHSVKAALLLKELFKKYNLYEKAVVLSFYPNVVYQVRKADPNILVIQNWIKRHLSYHRNGTPKHSHWSMTKIARSLDLLVEFSVHTWIYHILRFPVLITHHSEASGLYVQLWKESNVSVIVYGVKHKHEKDYFTHLGCPVIVDNVKELAQHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I491</accession>
    <name>A0A7D9I491_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Deleted in malignant brain tumors 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A089505</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003083">
        <property type="protein sequence ID" value="CAB3997370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I491"/>
    <dbReference type="OrthoDB" id="536948at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.250.10:FF:000001">
        <property type="entry name" value="Lysyl oxidase 4 isoform X1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000653">
        <property type="entry name" value="Putative Fibrillin-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19331:SF465">
        <property type="entry name" value="EGG PEPTIDE SPERACT RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19331">
        <property type="entry name" value="SCAVENGER RECEPTOR DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00530">
        <property type="entry name" value="SRCR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00202">
        <property type="entry name" value="SR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="197"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="210"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="241"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="335"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="348"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="379"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="524"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="537"/>
            <end position="598"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="568"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1014"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3997370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1014" mass="111894" checksum="3972AD0B92FA1EC1" modified="2020-12-02" version="1" fragment="single">CTVANSFEVNFGVPQGSILGPLIFNLYVADLQLYIKDKCHQYADDTTLYTHCKPESIQDAVADIQSSVRKLEEWSSEANLVINPSKTTFTIQNPVLTETPTKDQRTQRNRVTVGEAAIYLTLVPWSKSGLEFGYKFQCPWNCGQIRIINGFYCLPRPFLRCYAAFQIQLTTITLRIQGSNGIGRVEVLHNGQWGTICDDSWDINDARVVCRQLGYTNAVKALQGGFVPDGTGQIWLDNVGCSGSEQSLTNCPHRGWGTHNCGHNEDAGVECLTAMRKVVFILLSIVPMIFDETIISLQKTTTICSLAVMRIQGPSSANGTGRVEVLHNGQWGTICDDSWDIKDANVVCRQLGYKNAANALQGGQVPSGTGQIWLDDVTCTGSEHSLTSCSHGGWGNHNCDHSEDAGVECSSTDVNECSRGLDNCGSNSQCINTVGSFLCRCNNGYTGNGVVCSDIDECSLSIDNCQQNSNCTNTDGSFLCTCDNGYFWTGTVCQGISLRLQGPLRSNGTGRVEVFYKGQWGTICDDIWDLNDARVACRQLGYRNAVRALQGGFVPDGSGQIWLDQVACSGNEQSLSRCSHNPWGNHDCSHSEDAGVECSGDLNECSLGLDNCGNNSQCINTVGSFSCRCNHGYAGNGAICTDINECSLSIDNCHQNSNCINIDGSFLCTCDSGYTGNGTVCQEHWCSEAVVSSIAPPRNADWGYSLHYLLQYICNKLELNHSQPHFSDERLTSKEYSYECALFLDDVTFFMFVEDHQHGQTACVNRRSGPLAKSKVHQRSRALVINGVGVLANTDWRNNCYIKEGSKVADVNEISRASYVLARILTCVILDVGFPRVEVVCNVGNLSTLTKNSGSFLLELPFSRRRAKITTAKIFLNFHILWLRSRNNRNSAANLTWQFSNCQVPRESGPLVLKLANSHANLPMFQRLSILLALLTIEEMWYSKHAVARGPAIEHNGVFPRNERILFNDATTRLKCKLQAQLQLANHIGKFTYNHIGKFTYNHISKFTYDELHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4X6</accession>
    <name>A0A7D9I4X6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">40S ribosomal S2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A070345</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004139">
        <property type="protein sequence ID" value="CAB4001627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4X6"/>
    <dbReference type="OrthoDB" id="5983166at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2410.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="HECT" evidence="4">
        <location>
            <begin position="654"/>
            <end position="758"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="235"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="48"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4001627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="772" mass="89183" checksum="E82AE46098F52403" modified="2020-12-02" version="1">MAKNEELQTIGRLRKGDVLALRAFVEAKPNKAERDEKKRKLLETLKAKLPRKKSKSKSKVEKTTEIKEDPKITIRKVLIGWQHFDKVKNKYVSVRMSKGGGSRDISVPINSTRADIIEQMKLVFFPHGKSVFGSASRMKMSLGDFKYEEITDDDFTLMNYIKLYKLSKVRLYLLTKSVDDIRNIFESSDSEEELCPAFDEHGLCPTFDEHGHTSGLIGSVSERSNLRQQQDVEYLQSLTKDQEKENDKRKELQSIQDKVKEEQDLYRARLANVVHEPDMSEPHVTVSVRHLTIGVQTRRFPILCLISSIYDWVGSLSPNPTHFTLSSCDMASFDPSLPVTLDCSSIKQIQDNHDLNNLEVIEDIWEVPPPFLLEGDVMKSEPILDSNVEIAAATLENEESNQQGNQIRQNEIDNPNIYPSLDDRSLHDDLQNLPVTRVLKIRRVNIMQDMIENFKDESIMQIHVKVVMINSFGKEELGVDDGGVFRDALSAFWSSFYDSCTVGEEERVPVVRHDFKEEEWEAIARILVKGYSELKFFPVKLNKVFMFSTLFESEKIPDELLMESFLGYVSKDERDLINTALKDDDLDDNQEKEWLDFLERFDCRTIPKKEDRQTIILELAHKEMVQIAQFIIDSWRKPFKENLANRDAFSSRESLEEIYQNARPTVKRVLKLIRAEPTSNSQRAVLSFLKRYIRGLDDEKLTKFLRYCTSSTMICVESIKVVFTDLDGAARRPIAHTCGSVLQLPTTYQSFPQFRQEMNNIFSSQYWDIDIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9G1</accession>
    <name>A0A7D9I9G1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024634</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004657">
        <property type="protein sequence ID" value="CAB4003540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9G1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="23116" checksum="D726262884118AA3" modified="2020-12-02" version="1">MSKNEKPVLDIQVVQANGDIGKLTFMITVCSKDTEIQQKDRTTQTNYHYIAAKRPFEIAVLRTAIPSSEWNTHNVIAPKIVADDQHKPWVWLQKIKEHYVGASTLMQDRYHFWVKMTQPPTAPIAMWETMVCVAADRCSFGAQSDEFMSDYRLALLNIYATPHHMVIRFRQRNVRWGDAPVLVYHYAENAFYQIDVIAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ID76</accession>
    <name>A0A7D9ID76_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Disco-interacting 2-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A037236</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DIP2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005416">
        <property type="protein sequence ID" value="CAB4006127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="69964at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010506">
        <property type="entry name" value="DMAP1-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22754:SF32">
        <property type="entry name" value="DISCO-INTERACTING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22754">
        <property type="entry name" value="DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06464">
        <property type="entry name" value="DMAP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01137">
        <property type="entry name" value="DMAP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51912">
        <property type="entry name" value="DMAP1_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="91"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="231"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="296"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4006127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1511" mass="164816" checksum="F030694DE0580504" modified="2020-12-02" version="1">MSDTTLDELIETSKHSFQTSKFHGRTTEYFVYECSSSDANDGRTFALIMAGRDYSSYPPGLEEDLKALDLELDEGDITQKGYEKKKARILAKVQQGPPPEPQANDRPERSHFKPGSDSPYHPLPVLRVEVVQAALAQRKSQIESHGPSPFKRQSLRQKTQTELEEVNIPVADYDGAGEPANGEVQATNQTSSKYRLTIEDTPASNAVKVVASRQEEEEVVIAQPVVVEGDRSKAGAKRRSQMQVVSIRLDSDSDSSNGPASPGKVSNKIQQLLNTLKRPKRKPLEQFFTDDYDVVEEPKLDPGAPKPEGTTTKPSIGDPLQQLAQWGNSLEEALYRYGTSHHKAAAISTIDNHCKTSYTLTYGKLLSKAQKIAHTLLNRVGNPKEGTSIMMGDRVALIYHPDDIVGFSTAFYGCLLAGITPVAVEPPKTKDDPGGQQIGFLLGSCGVTWVLTTETCFKTLPKDDTGNVVHFKGWPNIRWYYTEKLGKPPKDWRPPSSLDRASPAYIESTTGKDGSALGISVTRANMLSHCQMVTHACSYTAGEVMVSVLDFKREVGLWHSILTSVYNGMHVIFVPGCVLKTNPAMWLQVVTKQRATCALVCSRDLHWSLHATKEIKDVNLSSLRMLLLADRANPWSLSACDAFISAFERKGLKPESLCPCASSSETLTVAIRRPGKPGSTATGRGVLSLNGLSYGVVRVDKEGSVTSLTLQDCGTVPPGVKIVVVKPDGPPKLCKTDEVGELCVASGTVGSAYFGLVGKTNHTFKVQPLGADGGPVEQYSHYSDYVRTGLLGFLGPGGLVFICGTVDGLIRVSGRRHNADDLKSTILAVDPIKFVYRGRIAIFGMEVLREERIVVVAEQRPDCTEDEAFQWMSHVIPAIDSIHSVGIYCLCLLRPGGLPKMSTGNIHVFETKQRFLEGSLHPSNVLMCPHSCVTNLPKPRGKHQEPGPGAVMVGNLLRGTRIGEASGREIGEVSDADKRFQFLSEVLRWRAQSTPDHVLYSLLNTKGGLASTLSCIQLHKRAERVAQMAMECGDLSSGDRIALVFPPGIDLVVAVYACLYAGLIPIPIRPPYPKNVATTLPTLRMVIEVSQSQAILTTGNLAKLLKSKEALSVVNNKTWPLILNSDDPPKKKLLRPYNPPTPELLAYVDFSVSTTGVLTGVKMSHAAVTALCRSIKLSCELYPSRDICLCLDPYSGLGFLMWALTGVFSGHHTILVPPGDLEANPALWLTVVSQYKVRDTFCSYPVMDLCTKGLGQHIPTLKAKGVNLACVRSCVVVAEERPRINLTSAFSALFSGLGLSPRSVSTSFGCRVNVAICTQGSASPETSTVYVDARALRNDRVTLVEKGSPHSVCLQESGKILPGVKVVIANPESKGMLGDSHLGEIWVRSGHNGTGYFNTTGDDLLSSEHFQAQLLTGDTTTRFARTGYLGFIKRTDYTQTDGARHDALFVVGSLHEALTLRGMRYHPVDIENSSSDVTNLSASVLYSHGRTYWSLSSNWKRMKTRLWMSYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHQ4</accession>
    <name>A0A7D9IHQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005251">
        <property type="protein sequence ID" value="CAB4005616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHQ4"/>
    <dbReference type="OrthoDB" id="5984319at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15559" checksum="8A36E7B350324BD7" modified="2020-12-02" version="1" fragment="single">MQEIWRAGLDWDDNLPSDLATKWKNWATELSQLSHVALPRCLRLANPNKMELHLFSDASKDAYASVAYLVCQYEDDSPTSRLVASKCRVAPTKAMTIPRLELMGAILSSRLAQSLLKVLTVDRVIFWTDSENVWYW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IMX6</accession>
    <name>A0A7D9IMX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062000</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006388">
        <property type="protein sequence ID" value="CAB4009253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IMX6"/>
    <dbReference type="OrthoDB" id="10068075at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11542" checksum="7AA32457323D56B1" modified="2020-12-02" version="1">MEVTKFAGDPKEYWRFSTRFKDQVLSQPIGESKKLSRLMQYLDGKAKEAVEDCEGMGDGALQEALNVIETRFGQPYMIVDASIGSLVKGRTSIVEMEKVYRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IP88</accession>
    <name>A0A7D9IP88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ankyrin repeat and SOCS box 13-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A085922</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006723">
        <property type="protein sequence ID" value="CAB4010254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IP88"/>
    <dbReference type="OrthoDB" id="5950161at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050776">
        <property type="entry name" value="Ank_Repeat/CDKN_Inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201:SF16">
        <property type="entry name" value="ANKYRIN-1-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="21693" checksum="EFF0544C1B57198F" modified="2020-12-02" version="1">MLLNASAWVDVQESWGRTPVFLAIEKRNIDIVTLLLQRKANVHIADSIKGHTSLILAASQGDTGCMRLLLDYSADPNCQDIFGQTPLHHVVNETTDDNTEKCIRQLAAYGAVCSRDNKDRSPVDILLDKNRFSDAETMIQLTCKPRTLRSICWVKVRQNLQTQKILDLRELKIPKCLIRFIEDDLAFLETN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZ14</accession>
    <name>A0A7D9IZ14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059772</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010539">
        <property type="protein sequence ID" value="CAB4019590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZ14"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="201"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="107"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="253"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="341"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="109"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="152"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="253"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="343"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="45101" checksum="04F0D9546DA378FE" modified="2020-12-02" version="1">MHYLDYSQTNPKLKLSAPIFKEHDGECKVMELFKFIRDGQEWKGNGSDLFYINGTSKDTKVFEIKSMENLKAWNGSLLILNVSCGNEESEEVHCVLLKLKSLPPYPEVSPTSSSTDVSHSSYQSAPPTEDYTSTREVPFTFPWINATRPTTLTRSSQFTEDQRMSSKLPSQSPTPKTSTIENPQEGFKEETSESDGTNATAIAVTITLLLVALALALGYLLYYRRRKSYPISNPASTEQEYTYAKDTDLARSSVTTKAASEGPTSNGAVYETLEQPGQPTDDNFYNYPDNTNIANQGSSELEYTYAKYTDLPRDTADTKAVRERDIEPATCGGLYHTLEQEGPVSTEQEYSYAKNTDMPSIPLGTEETSNSPPPNSALYHTLEEANPPQAPVYSTLEGPEDVENHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZU8</accession>
    <name>A0A7D9IZU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034987</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009764">
        <property type="protein sequence ID" value="CAB4017910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZU8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="entry name" value="Serralysin-like metalloprotease, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="25830" checksum="F135AA151EE21DAC" modified="2020-12-02" version="1" fragment="single">DKVPGGEGKVPGGEDKVPDGEDKVPAAEDKVPGGEDKILGGENNVPGAEDKVPGAEDNVPGGEDKVLGGEDKASGAEDKVPGGEDKVPDGEDKVPGGEDKVPGGEDKVPDGEDKVPGAEEKVPGAEDNVSGAEDKVPAAEDNVPAAEDKVPGPEDKVPGGEDKVTGGEDKVPGAEDKIPAADDKVPGAEDKVLGVENKVPGAEDKVAAAEDKVPGGEEKVPGILTIVGACAVDLEYDSGWEGREEEGAGSPGKAGKIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J0F6</accession>
    <name>A0A7D9J0F6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Probable G- coupled receptor CG31760</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A016136</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the G-protein coupled receptor 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009725">
        <property type="protein sequence ID" value="CAB4017836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J0F6"/>
    <dbReference type="OrthoDB" id="2129233at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000337">
        <property type="entry name" value="GPCR_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017978">
        <property type="entry name" value="GPCR_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043458">
        <property type="entry name" value="GPR158/179"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32546">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTOR 158-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32546:SF26">
        <property type="entry name" value="SMOG, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00003">
        <property type="entry name" value="7tm_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00248">
        <property type="entry name" value="GPCRMGR"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50259">
        <property type="entry name" value="G_PROTEIN_RECEP_F3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0807">Transducer</keyword>
    <keyword evidence="4 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="161"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="196"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="228"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="339"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="304"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4017836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="442" mass="50409" checksum="2D02982C65B6E170" modified="2020-12-02" version="1">MYQRNMSLRTVFLTISEIIKAIAIALGVFIFIFRETKIIKASSPVFMEIIAFGVVLMYFEITLGYFEDTVLLCIARSWLYHTGFILAFGSLLLKTWRIAVIFRLRTAKMIELTDRTLLKYLSLMLVAVLCYLMIWTWTQTHESEIKMTSAGFKYKRCVREWFSNAIEIGEVLLLLWGVWLCLRVRNAPSAYNESKYIAWCIYNTVFIMILVGLLRIVLDNFHNPDVSYVVDFLSTHVVATILLALLFISKIYHLRKFKKDTQRRNRANSATSTTVTDLRKSPFHLNRLVDGTLVVCEIEEERTVVGLESENIHLREEIRNLNAKLAIFENKLARESKRLGSSPEDDYKLHHSDSPIISADSETESSRDGNGFSDKHARKCSAAAESTASNGSVFGREERGGSLIEHIKNAGKQDNFLVVPKQNSVSDEETLTVMSNISNESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JG72</accession>
    <name>A0A7D9JG72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chordin 1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088153</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015927">
        <property type="protein sequence ID" value="CAB4029077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JG72"/>
    <dbReference type="OrthoDB" id="8173378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036122">
        <property type="term" value="F:BMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030514">
        <property type="term" value="P:negative regulation of BMP signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.200.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045717">
        <property type="entry name" value="CHRDL1/2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001007">
        <property type="entry name" value="VWF_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46303">
        <property type="entry name" value="VWFC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46303:SF1">
        <property type="entry name" value="VWFC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00093">
        <property type="entry name" value="VWC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00214">
        <property type="entry name" value="VWC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00215">
        <property type="entry name" value="VWC_out"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57603">
        <property type="entry name" value="FnI-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01208">
        <property type="entry name" value="VWFC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50184">
        <property type="entry name" value="VWFC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="18511" checksum="3DA7797DC689E279" modified="2020-12-02" version="1" fragment="single">DGLVDCEETKCRPITCPGKLMPSGKCCAVCPNPENGVSLSKKQCRYNGKSYQQGEVWNIPMEKEIGDNNCAECTCHNGRVSCAVRICPKLKCATIMQVKGKDSCCTQCRGFPLTPIGGLFQFKPAVTVQGSCFDKGRYYKNKDMWNPLVSTSETKAFQQPNCDLCVCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGU2</accession>
    <name>A0A7D9JGU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107355467</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042852</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015883">
        <property type="protein sequence ID" value="CAB4029012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGU2"/>
    <dbReference type="OrthoDB" id="5982457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="33513" checksum="390FB00B04B61D3F" modified="2020-12-02" version="1" fragment="single">TQDKHPVNRNLEQLTASEVKLAELLWIKSIQSLSFDKEILFIISRNAKSTPPVYVNQFGLFLDDDHVLRCKGRLNNASLNLGSKNLILLPNKSKFVELLIRKVHDKIKHSRLRDTLTTIREHFWLLRGREAVKRVIKKCVICQKAEGLPYGATAPPALPASRVSDEPLFTNVGLDFAGPLFVRESRELEKSSDNSSKVYVLLFTCASTRAVHLELTPSLSVPAFLRAFRSYASRRGLPALLISDNAKTFRAASAEIRKLCRADEVLRYLTNNQITWQFIVEKDPWWGGFWERLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JNC2</accession>
    <name>A0A7D9JNC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A078705</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018769">
        <property type="protein sequence ID" value="CAB4032873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JNC2"/>
    <dbReference type="OrthoDB" id="6771932at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="482"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="148"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="161"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1260" mass="143045" checksum="35D236C21FE58816" modified="2020-12-02" version="1" fragment="single">LSDDESTGPNISQKLADIALKRWGKQLNPEKLKSILEKYTRPENCPGMTCKKVNPEIWQLLGSKSKRTDIQLYNLQQSVLKATFAALQTTNMLVETPNRDNSQLLASLVDTEYSAICSLEDQPNSKLLFGNDLAKNLKDAKEASSLSSSMKRFLAGPTQEQSKEKTLEGGTREEVTELLKQIRNSNLCTSFKDSEILSNITGVVIECTETPVQLNLPGQKFHPHEYQILDAEISNIFLRPKPDGSHRLILNLKKFNETDAYYSIPIKASDRKYLRFIWKEEIYQFTCLPNGLSCAPRVFTKILKPALATLHSMGHISVAHIDDCYLQGQTYDKSNYHSGISYQLIDMTIRLTSDKAIDLKKACKALRTASKPQTIREVARIIGKIVASFPGVMYGPLYYRELDKDKTQALKEAKGDFDVTMTLSQGAKTELHWWECHVENSFQKLTHEEPQHKITTDASLSGWGAEYQDISTGGMWTKSEATNHINYLEMLAIFLGLQTFAKNLNNTHIRIMCDNTTAVNVINHMGTSHSDICNNMAKQIWEWCIDKNIWLTVAHIPGKQNLVADYESRRHQRESEWMLNKALLSDTLVKLNFSPEIDLFATRCHWSYAGKDPKRGSLPSHPQEKLERYDLSADAKEIIMASWRPGTSKQYKTYLDKWQVYCKERQIDVIKPGLENGIEFLVSLYHLGIGYSAINTARSALSNLLILDEGVKFGEHPLVIRYMKGIFEIRPALPKYSEIWDVIVVLNYLKTLEQVASLPLKELTLKLTTLLCLTTGQRGQTIHKMDVNGIQALPDRYRIIINDKLKHTKPGKHLAPIDLLAFPEEEKLCVVKTCCAASTSSCKAKGLTMKAIMEAAGWSNAGTFATFYEKPVDIVSQNFVRNEGQCACASHVTPSFRTDDQDRIPIKLQLPVFFDTPCMPKENFYSCYTLLNFIRYILMHSEPRMGWKKKNVTCSCDLLFVCCQLQMHEAGPWVSHTKGEIQREISNLVHLIFSKYFIKRTLNNQKMSNFYFDLSLKLQGEGRILDTKSSYIKENRYLQSQKICSVAITSNLNPHISRLGGSDLSCITFTMARDKSVIAKLLSELRTFRIDAARVSSQYVCIVTNKHSHSDSRHSQVLRETWERPPAMQAKWKTGLKSMFTNRVLIGMASDKMSEQQMSGGFLSTSDNFTNGSDNVRRSFVKERASMKRANEISIVSAYFSLPQCTAPGPAGYSCLINRHKANKELINYHDFKNLNVENLLEDLSKCPWDNAFIFDDVDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JR09</accession>
    <name>A0A7D9JR09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019417">
        <property type="protein sequence ID" value="CAB4033635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JR09"/>
    <dbReference type="OrthoDB" id="6121320at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26812" checksum="06457ED01D82CDF5" modified="2020-12-02" version="1" fragment="single">NLHFRNIRQTRSNHDVPGTVDCNTEEEFDTKLSSLQKKWDERESEHGRPSDSGSTFYEWFVKEKANDVKTSMFKPVKMEAGLGDPPKEYLNNDPESANFIIKHSLHFDPKKPQEFIQEVKKIVETQYRNEDRAVFGKGMYKVREEFQHLVVDDIRWSKMTHAQRLSKLQTYQKTGMDGKKTYLNLNDGETETSTVTQAVSSANQLPLSAAECGITTILIVIWMLCSKRRKSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JV73</accession>
    <name>A0A7D9JV73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030366</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021870">
        <property type="protein sequence ID" value="CAB4036290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JV73"/>
    <dbReference type="OrthoDB" id="5979373at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF8">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="243"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="252"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="37468" checksum="68A76005878D4C86" modified="2020-12-02" version="1" fragment="single">MDDNEVDQHKDTWKFIKKHLNDMKEGEDITFDQLLVNLKLTKQNYLLAVQSSLKTPTIFLKRKPNELRINNYNAACLSAWRANMDIQFVLDVYACAIYIVSYISKAQKGMSELLRTACEEAKRGNSSIKQQVRDIGNRFLNNVEISAQEAVYIVLQLPMRKSSRQVVFINTSPPEDRVQLLKPLQEINDLEDDSDEIYASGLIKRYTKRPAKLENVSLADWAAWYDSTGKPYIKPSRELDIDNYPLETNLSGDDDNNEEEESEQKNKKRSKARVIRSVCFNKEVDSEKHYRELIMLFTSWRDEITDLLGNCASYQEHYFQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JYP2</accession>
    <name>A0A7D9JYP2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056796</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023161">
        <property type="protein sequence ID" value="CAB4037493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JYP2"/>
    <dbReference type="OrthoDB" id="8052050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="42"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15109" checksum="CF4EDE5ADCA65304" modified="2020-12-02" version="1">MLLEDFNARTSNLKDFVSKEGNTFINDISETSFEPKTRESFDNSTNQHGKSLVEIFKNCNMRILNGRTLGDSFGKLTSHHKNGTSVVDYIICDQELTQTIENFIVKPPTSLSDHSQIVTWIRTKQHINSTSNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K2H2</accession>
    <name>A0A7D9K2H2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025103">
        <property type="protein sequence ID" value="CAB4039230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K2H2"/>
    <dbReference type="OrthoDB" id="5984603at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12741" checksum="EBD04D14EE8476EB" modified="2020-12-02" version="1" fragment="single">MLLAFIMVPLIQKELDIFREKVWNTHRIRAQKDKLLPDGVPEHIYNFPEQYNLEECFAVTEEQLQEAATESGVLQVPDDFLTEEFRAECERLIPDNDTIKPDEWTNAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K6S6</accession>
    <name>A0A7D9K6S6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015810</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027970">
        <property type="protein sequence ID" value="CAB4041221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K6S6"/>
    <dbReference type="OrthoDB" id="5984732at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23241" checksum="8785B49EDEAE1361" modified="2020-12-02" version="1" fragment="single">MAATFSAEEVANVVVSSKRKHNKSEAKDQGNKIRKCLLPLFKESKSELLEEGVRLLQPLIEMPSSCPSKILAGSSINAAIVFRNELRMWLAAICRRLCGRRCVTNPFSSEITRDMPYELFVVFRRVVKTGPGFVEPYCFTGSNKKGDVISFTNLRLVTELLALLSGYPEKEVATYFRRNLTGLKAGHKVNVIASEAKDFAFIYIQKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K6V4</accession>
    <name>A0A7D9K6V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027875">
        <property type="protein sequence ID" value="CAB4041167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K6V4"/>
    <dbReference type="OrthoDB" id="5986544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="325" mass="36883" checksum="2E8D3E970C0C6EDF" modified="2020-12-02" version="1">MNCIGTFTSQLRHEDKTTTEEIFVVKGLERSLLGRQAAHSLNFLNCVDALNSNEMKESVKEKYPNLFTGLGQIKDQEYDIKVSHEATPFAITVPRQVPIPLRKETERELQRMERNGVISRVEDPTEWCAPMVITPKSNGEVRVCVDLTKLNQFVQRENHPLPTTDTTFANLAGARYFTKLDANSGFWQIKLSERSKPLTTFITPWGRYCFNVLPFGISSGSEKFQKCMCQILEGLDGVECNIDDVLVHDATQEEHDRRLEAVLQRLGNANVTLNAEKCVFNVSIVKFLGQIVGADGIKLDREKIQAILECHTQPTYMKSVPFLEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K749</accession>
    <name>A0A7D9K749_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028288">
        <property type="protein sequence ID" value="CAB4041419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K749"/>
    <dbReference type="OrthoDB" id="5971222at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20828" checksum="855BAFFB3081981C" modified="2020-12-02" version="1">MSALGQINRVKHVFNKELLITIINSLVFSKLFYCSSVWSTTSEGNIKKLQSVQNFAARIIGGLRKYDHVTPILKELQWIPVKKHLFYRDAVLAFKCMNGLAPNYLSSLFTTREAVSRRTTRQSDQLNLPLFTSVKGQKSFKYRIAKLWNELPPDIKLCGSISVFKFNLKKELLRQLRMEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8W6</accession>
    <name>A0A7D9K8W6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030697">
        <property type="protein sequence ID" value="CAB4042731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8W6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="69" mass="7883" checksum="4027DD829AEB267B" modified="2020-12-02" version="1" fragment="single">MATDNTEQIVSQLAQTLVDLSQTMSHMAMMLGDLWQKSQDTNVPLQQPDVEEPQHRRRGKKRRSKTSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KCI0</accession>
    <name>A0A7D9KCI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031332">
        <property type="protein sequence ID" value="CAB4043020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KCI0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="17945" checksum="DD889B36997FE2FC" modified="2020-12-02" version="1" fragment="single">MRRFPSAGHSSSAANSNKDEDTENTKLTSFANFTPTIKKGKLKETLLKNGPHGVSLLQLKSLEPHLPRGTEIMQKGVCKDFKQGWLLDEVVNSFFWCLQESNSHILYVPSTSMLVLQKNAPCGRLWKDEDITLKKIIVGPWNPTKLPLDSSRCRFTTKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KIC8</accession>
    <name>A0A7D9KIC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035769">
        <property type="protein sequence ID" value="CAB4044669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KIC8"/>
    <dbReference type="OrthoDB" id="5244787at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="31071" checksum="015399784BA74179" modified="2020-12-02" version="1">MLKLREAIFAFKCLKGLAPLYLCEKLHVRSDVHGVITRQKNILDIPMYRSAAGQRTFHYRAVSLWNSLPQSLKNIDTWTQFKVEYKLDGVASSWAPVTSGVPQGSIVGPVLFAIFINDLPNVLPDKTSAALYADDTKVYKSIKSENDCQIVQHALASFECWSHENNLDFNQSKCKKELLRVDKEKDLGVCVSANFNWDVHVHTVTGKANKIHGMLKRTCPLLRDKTVQRTLYRLLDLNYVTLVKSGLHTLSNSSLESKASKEEPPRGYYNPSMAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXB1</accession>
    <name>A0A7D9KXB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CAMK CAMK1 kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A011680</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011430">
        <property type="protein sequence ID" value="CAB4021428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXB1"/>
    <dbReference type="OrthoDB" id="5964819at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053235">
        <property type="entry name" value="Ser_Thr_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24361">
        <property type="entry name" value="MITOGEN-ACTIVATED KINASE KINASE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4021428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="48711" checksum="FFD3817C166F7520" modified="2020-12-02" version="1">MILNGCINHYNFCDKRPCVRCHRVEILIQHHFEETNGTCRCHKCKVWLCVLTYHTEICKLKGCIVCEKAKGIPSQVPAAPVIVHQTPSLDPDDLIVWRNESFPCDTTHFKEDEHYAFLDVLGKGGHGAVHNVEISDDVKKKYFNLSCRDFVAKKTDKVEDDEKYVFEQTSNHPNFLETYLVLQKMDPNDRHFRIVMERCEFSLNDHLSKLVNDGKRLEMDEAIFYWTQIFDALKHLHHLHIPVIHKDVKAENVLLSIKDNLVRVKLADYDTVKRLHHEFTMPGLNPKGTPGLIAPEVLRQVSHGRPADVWNMGMFLLQMLFLRDFNRLQRNILALKTVKNMNKFLFIHYTEQLIKNFLNEKIPELKQMDKKLADLIQSCLDEDPSKRPTAIEVLQHPAVTEYTRRGINMNELIRNLNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXC9</accession>
    <name>A0A7D9KXC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031993</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011292">
        <property type="protein sequence ID" value="CAB4021153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXC9"/>
    <dbReference type="OrthoDB" id="6376214at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.50.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050473">
        <property type="entry name" value="A2M/Complement_sys"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011625">
        <property type="entry name" value="A2M_N_BRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040839">
        <property type="entry name" value="MG4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11412">
        <property type="entry name" value="MACROGLOBULIN / COMPLEMENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11412:SF171">
        <property type="entry name" value="PREGNANCY ZONE PROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07703">
        <property type="entry name" value="A2M_BRD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17789">
        <property type="entry name" value="MG4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01359">
        <property type="entry name" value="A2M_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="481" mass="54179" checksum="4D77AAD91F791BDB" modified="2020-12-02" version="1">MKQHSKTMSFVGLDEKFKPGFPFKFKIKVTYLDGKPVTDGKVEIAVSRSRFYYRGTRQLFQKTYSVKNGIVAGVVEDMPQDTEKLHFKASYTYKSGRIWPKYATSKAWYSPSLSYLQLVKTGLSTAKVDSQGSVKVLYTLRNGTAKHINFHHKIFCKGNLVLSGVTKEDLSDQYYESNLPNTFSTPSTNTVSTPITTQRTYNPTHPFISIPEPTVKEFEIMFNITQAMVPSCRILVYYVRPDKETIGDSIVYDIEDKLENQVSIDFVEKQKRPGEKTKIIMKAKPGSRVAISALDKSVLLLRSSNEIKKSKVLSILNRQDVGPVRYYTGNCLYSWNMPHVADVSEAFNMAGVVFLSNLNVFTQPCGTSQQWFYEENDKPVTTLPPPTYIWGLGGDGDDHTTEPPTDADLITLAATHAVMSIQAPTDAAMTTQAPTDALVMTATSKTVIPTRLPVRKKKPIKKVKVRKDFPETWLWTEVKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1Q2</accession>
    <name>A0A7D9L1Q2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A069026</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012787">
        <property type="protein sequence ID" value="CAB4023996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1Q2"/>
    <dbReference type="OrthoDB" id="6125049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="366"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="486"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="366"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="400"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="489"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="522"/>
            <end position="533"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4023996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="533" mass="61558" checksum="D2E5491FEE33014F" modified="2020-12-02" version="1">MLTFIWAIEHYHLYLYGAKFIVITDHKPLLGIFKSQKPTSARIDRWKLRLMPYDCEVVYIPGKDAENPADFLSRHPNPVVSSPTNNTTEAYINYLCINLIPKAMKLDEVKKETANDPVLCKLSEAITYNRWLDPEVKPFVNVKDELSVCNGLIARNHRLVLPHSLQSQAIDLAHVGHQGIVKTKMLLREKVWFPSIDKMVEQKVKTCLPCQAATTSTHRHPEPLIMTPLHDAPWQEVAVDFVGPFPSGELLLVVIDEFSRFPEVEIVTTTSAKAVIPKLDNIFSRQGVPVVLKSDNGPPFNSSEFEQFASYLGFEHRKITPYWPKANGEVERFMRIIEKAIRTAHIEKKNWKQALYQFLRQYRATPHSTTNVSPSEALNNRKLKIPLPSIPKTLQQETQDPMRKRDQEKKEKMKKYSDHRQHSRTTDLKIGDTVLIRQPKKNKLTPPFNPKPFTVEARKGTMVTAKRGSKKITRNISFFKKIDNRVTDSSDDEDNDDDFDCDRTNEDQLNQEPVHLRKSQRERRQPNRLGFEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8Y2</accession>
    <name>A0A7D9L8Y2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020446</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016136">
        <property type="protein sequence ID" value="CAB4029384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8Y2"/>
    <dbReference type="OrthoDB" id="6021986at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031380">
        <property type="term" value="C:nuclear RNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031048">
        <property type="term" value="P:regulatory ncRNA-mediated heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045055">
        <property type="entry name" value="DNA2/NAM7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012317">
        <property type="entry name" value="Poly(ADP-ribose)pol_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047187">
        <property type="entry name" value="SF1_C_Upf1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887">
        <property type="entry name" value="DNA2/NAM7 HELICASE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887:SF341">
        <property type="entry name" value="NFX1-TYPE ZINC FINGER-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00644">
        <property type="entry name" value="PARP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51059">
        <property type="entry name" value="PARP_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1015" mass="115433" checksum="03B8E4735C86FD4E" modified="2020-12-02" version="1">MQNLNSRIDELEMTDKVEMLSEKKIIGLTITGASINHDLIHHIGPSVVIVEEAAEILEPSLLAALTPSTEHLILIGDHKQLRPQVDTYQLCTNFHFDVSMMERLIESGFPFESLAKQNRMRPEFSVLLHDIYPNLEDNLPLVSKNEPLKCIEKSMFFWCHDDPEKKDRTYTNVKEAERIIALVMFLLCNGVRPSDITVLAAYLGQTKLLRNMIKKEKDITPKFFKEYDESGDNREGSVEVQTIDMYQGDENKYVIISLVRSNKENRIGFLNKINRRCVAQSRAMSGMYFVGNVNTLCGARDSCWSEFITSMMKQDCVGYEFPLQCMKHESSKYKAMDGNSIRAVNAKPILLCKQLCGDSYLHCDKHPCKKSCFPRHWHTDCPVRVYDQFPDCGHDVKRRCPEKISDLRCEDMAIVNLPCGHQNRKKCFQNISDVICRIPVTVTFPQCGHKTSKPCHVKIGTIECQHPCKEINSCGIHQCKIICGKIHGHDCCSEKIDYNFPVCGHPSPKKKKCSEKISWDCKHKVYIKGACGHYIEKKCHQSESEVKCPITPCAKLRKCGHPCRNACGDECEKGECKLCLRVYHKKLEEFREAAKKRVKELEIKIGKRQIPNFSRHEIRLSGATAAEYQKVEDQVMKFIQPCHHWFPKITKIEKVTNLVLEKKFEVAKSKAFGDYIDTKFHGTSNDNLKKIIKNGFKMPDQKPVPHTKRGMYGQGIYFATDSSKSAQNIYTQGSQKLLLSQVILGRSKEVHRADYDLNKKTLRSKQFDSVYAPRGSAVKNDEFVIFDPDQALPQYIIHFSDSVLPPSPSTLKMQQTFIVKNMKPLRTVDIRNPFQMYYSWADSHFRRMAATSKPPLSPQQATISSIDIVINKDLEDKFEATKKKFKNQGIPDKEILAYHGTEKANIHSILKSNLQLRYAKRQAYGKGNYFSEFPSVSLSYGDGLLLCRILPGKEFVDASGSKIPAGYNSKKVLLKVQPASATGATATTAAAANVSGEMIIIENSDQILPFFVIHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHI6</accession>
    <name>A0A7D9LHI6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033868</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018373">
        <property type="protein sequence ID" value="CAB4032401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHI6"/>
    <dbReference type="OrthoDB" id="5971833at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="22375" checksum="E009D0C5964C8C2D" modified="2020-12-02" version="1" fragment="single">VKSGITKKRLIDPNINEFKVVYKNMMKWLKNRVQKACEWYKKRDISKDVRPVLCAHGGFKFDFEIFIRNVERYVGRYVGHFYKMKYLHLAFADTFLLCQELQEDLPELQDTARLGMDGLYSLFYPGEKFPDRHRAMGDVNAMLKIFGDKLWEHLPQLRILTYKSFDEHKDGVVGGDEFGGRDVGPNVKNAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJ09</accession>
    <name>A0A7D9LJ09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013709</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020111">
        <property type="protein sequence ID" value="CAB4034436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJ09"/>
    <dbReference type="OrthoDB" id="5987432at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="9440" checksum="87278ADC4B85BDE9" modified="2020-12-02" version="1" fragment="single">MTVPCRWDVHHPVGDLKCLALQWVVQKHLNIAHLIHILDDYLMAASSHDQCCTDLKNFLSLCEYLGVSIAPEKTVGPRTTLPFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJK5</accession>
    <name>A0A7D9LJK5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pancreatic secretory granule membrane major glyco GP2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A073968</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018120">
        <property type="protein sequence ID" value="CAB4032093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJK5"/>
    <dbReference type="OrthoDB" id="5945417at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043025">
        <property type="term" value="C:neuronal cell body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008046">
        <property type="term" value="F:axon guidance receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050808">
        <property type="term" value="P:synapse organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01099">
        <property type="entry name" value="PAN_AP_HGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050958">
        <property type="entry name" value="Cell_Adh-Cytoskel_Orgn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057774">
        <property type="entry name" value="D8C_UMOD/GP2/OIT3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080">
        <property type="entry name" value="CONTACTIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080:SF34">
        <property type="entry name" value="MYOSIN LIGHT CHAIN KINASE, SMOOTH MUSCLE-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23283">
        <property type="entry name" value="D8C_UMOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57414">
        <property type="entry name" value="Hairpin loop containing domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="41161" checksum="EFB98F631CEA6E20" modified="2020-12-02" version="1">MTDIFTESTLCVPGMQDMTGFLLKSFYCTPDRIPGNHVFLDQGPGKRFGISEVGVYEETKPKILDHRKNRYAWSKVSGSITLECAAEGYPAPLISWVKDKVVTKSGSGSLQLMNLKLNDSGVYECWANNSNGFDARLYKLEVTSELRACVKNRELQFQHERPSTGLNQELQGNMFYRFTDAQKHTDLQFRDARPSKMVPSCTTWLKGGHPNVKDGVVSRQLCIKDQGQDCHRTLNIFVRRCAHYYVYNFKSMKNVSHLTFCMKNAVNLQRGFQPMMTSSTRHHALSGKTFHTEEYFEESYECLMVCQLDKRCKSFNFSKKLKLCELNSGTKKEFPGNFVSNMDFDYYHIKHGIVRQEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M178</accession>
    <name>A0A7D9M178_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger BED domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028969">
        <property type="protein sequence ID" value="CAB4041808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M178"/>
    <dbReference type="OrthoDB" id="8772022at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501:SF5">
        <property type="entry name" value="HAT C-TERMINAL DIMERISATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501">
        <property type="entry name" value="TRANSPOSASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="51804" checksum="9D03EF67DE1B6A0B" modified="2020-12-02" version="1">MDKVEHVATTTDCSSAHGRSFIGVTGHWIDPETLERKSCVLACRCLKGKHTYDVLATQLEDIHTEFEIRSKVSKTTTDRSNFVKDFSVFAEQEQEQENRDDPDKDEECHFEDVFDDLTQASAGLEYQLPPHQRCAAHTLNLISTSDAEKAEADGNYKRLSRSTFAKCSSLWNKSSRSVQVAKMVKEKCGLSLIKPNATRWNSIFMAVQRINRIIKEKGENVIHSVCSLADVPKFKPAEISFLNHYAQVMKPVAQALNILQGETNHSNAYMGYLAPTITILRDKLSKKLDVPVTKPLVQELLNGIDKQFDSILNDKKIIAAAILHPKFKESWSTDCDVIERGISFINEKLEGLVEPVVDEPGQSSSEDQDETDFFQAKNRRSSDCTLKSFLESPVEKLCDYARWPLLRKLFIELNTPLPASAACERLFSAGGLIFRPHRSSMTDTNFENCILVKCNKDFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M6A8</accession>
    <name>A0A7D9M6A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031639</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAM91 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022232">
        <property type="protein sequence ID" value="CAB4036619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M6A8"/>
    <dbReference type="OrthoDB" id="275996at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039199">
        <property type="entry name" value="FAM91"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028097">
        <property type="entry name" value="FAM91_C_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28441">
        <property type="entry name" value="PROTEIN FAM91A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28441:SF2">
        <property type="entry name" value="PROTEIN FAM91A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14648">
        <property type="entry name" value="FAM91_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="28850" checksum="45AB512591321D40" modified="2020-12-02" version="1" fragment="single">GFDRLLIATWGHDPTPVPVSNVLVALNDALTHSAVLIQGYGMHREGKIHRISFPLKASKESLEDEPQSHDLIHHPAVQTLSRAIDMQNTCGYITLLNPHLTSRTETDVEETASMFQFTGDPVGELFSTNSEPVLGTENKEYDITQSKNGDRDKNFEDWCLLDMHFGLPLFDATLNQEISSKISKEKLFHEENLQKLVNSSRRLSLRLLEFISNNQDVPLVQDSFDTTSNNNEFSCPYPTGNLIFYRGKLSRTNDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MBK6</accession>
    <name>A0A7D9MBK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069102</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038155">
        <property type="protein sequence ID" value="CAB4045210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MBK6"/>
    <dbReference type="OrthoDB" id="10066279at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.660">
        <property type="entry name" value="IL-4 antagonist (De novo design) like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="25607" checksum="8D74518902805728" modified="2020-12-02" version="1" fragment="single">VPHSEDSVPHSEDSVPHSEDNVPHSEDNVPHSEDSIPHSEASVPHSEESVPHPEDSVPHSEDSVPHSEDSVPDSDVPHSEHSVPHSENSVPHSEDRVPHYEDSVPHSEDSVPHSDVPHSEDSVPHSEDSVPHSEDSVPHCEDSVPHSEDSVPHSEDSVPHSEDSVPESGVPHTEDCVPHSEDNVPHSEDGVPHSEDSVPHSEDSVPHSEDSVPHSEDSVPHSEDSVPHSEDSVPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MCP8</accession>
    <name>A0A7D9MCP8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037053</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039510">
        <property type="protein sequence ID" value="CAB4045445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MCP8"/>
    <dbReference type="OrthoDB" id="6015742at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="147"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="147"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="167"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="212"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="232"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="433" mass="48427" checksum="3D778C00F8F98706" modified="2020-12-02" version="1">MAYTGLLPTPNVSQLKSPVMSDYVKNSYYPIPFQIVNIIESCNVSETASWNINVMAKNIKFNIEWNIGQSNCNIDIFPKAVVSTISTYNVEQPVWSTSFANQKLSLKIEWKLTSTNQNTCRSAVATPVNTTFHRVFPDSGYHSGLTTPYTSTAPVNSRYNSSLPRTKLFDSPRKHDVYRPNGNTSKNSPSTNPKNRVLIPPEPSAIHDKPEVNSSNVVPLNSNTKEYKAEQSKVSVPESVPESKPVKPSSTKPSVELIPNVHKFVIDYRSTDGNILTLPDPQNEDFTPFDDKFVKTPDDLKPDSNGLLHVNINADRMNIPGTCRLCKKSLKSHQVDAHLIVCPNLNSSEVDEFIHEVSEATGGLGGEINDQIFNYCELAIEDSNINDTFHSILNFKQFINNLESFLDKRAIAVFKKCNILGLQKRSNILNYNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FBX2</accession>
    <name>A0A6S7FBX2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DnaJ homolog subfamily C member 21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A054303</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000005">
        <property type="protein sequence ID" value="CAB3976625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FBX2"/>
    <dbReference type="OrthoDB" id="552049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.110:FF:000046">
        <property type="entry name" value="dnaJ homolog subfamily C member 21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="entry name" value="DnaJ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051964">
        <property type="entry name" value="Chaperone_stress_response"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018253">
        <property type="entry name" value="DnaJ_domain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003604">
        <property type="entry name" value="Matrin/U1-like-C_Znf_C2H2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022755">
        <property type="entry name" value="Znf_C2H2_jaz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054076">
        <property type="entry name" value="ZUO1-like_ZHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44029">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44029:SF1">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12171">
        <property type="entry name" value="zf-C2H2_jaz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21884">
        <property type="entry name" value="ZUO1-like_ZHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00451">
        <property type="entry name" value="ZnF_U1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="Chaperone J-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00636">
        <property type="entry name" value="DNAJ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="390"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="501"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="559"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="179"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="509"/>
            <end position="519"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00074367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3976625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="578" mass="67790" checksum="E775CED8D0C14153" modified="2020-12-02" version="1">MRCYYEVLGVSQDATDTELKKAYRVLALKWHPDKNTDSPEEATDMFQEIQQAYDVLSDRQERAWYDKHREQILNGGDDYIDNSLNLMHYFQPSAYRGFGDDEKGFYAVYSFVFKTIVEEDSKFVNDKSLLDDIPLFGNSSSPFEEVKLFYNYWQSYCTFKTFVWHEKYDIRQAPNRRVVRAMEKENKKLRDTAKKERNEQIRELVHHVRKRDRRVKAHKEKKEEEEKAKLLMMKEKRATEKKERLEKLKDYHEQDWNSMSHLEKNLTEVASHINEEFGDDNSSSLSESEEVESFYCIACEKLFKSDKALKNHEKSKKHRERVSLIKEHMEENLSGQAELLDVQQDRNEYKVTINMNVEGSTADDNSTIDVDALHLRDSLDLPAYISGRSRSNSRRIVKSSGEGQEQKDACGKQLADEITLAFAHKGKKSKKRFQKTRSLEGRSSEEDVDSLVNECGLDECERKMVELILQNDKEEDEVEQHMFNITDEGVEKNINIEFEVNSKENETKRKSKTRRKSKKDKTENGENESLGLRCNVCDKEYSTRNQLFKHINETNHALKIADGSDSSPKMNRRKKKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNN6</accession>
    <name>A0A6S7FNN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072648</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000360">
        <property type="protein sequence ID" value="CAB3981178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNN6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14787" checksum="DA0C347E6AACD2AB" modified="2020-12-02" version="1">MKTTFISQYAEDYKIIANQSGVRTANKDKYGTMLRDASHFDDHNGKTLHLITVNYICWINSGELHFLSYDKTEQLTRYKPEITDCDIFLPTRILDIFFDIENDPSNEILLTNRRSNGIFQQEQRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQA2</accession>
    <name>A0A6S7FQA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ADP-ribosylation factor 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A003524</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000233">
        <property type="protein sequence ID" value="CAB3979817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQA2"/>
    <dbReference type="OrthoDB" id="25466at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053254">
        <property type="entry name" value="Arf-like_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006689">
        <property type="entry name" value="Small_GTPase_ARF/SAR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46724">
        <property type="entry name" value="ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 9-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00025">
        <property type="entry name" value="Arf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00177">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00178">
        <property type="entry name" value="SAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51417">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="68"/>
            <end position="75"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="25677" checksum="B27BF3E22D4B0C0C" modified="2020-12-02" version="1">MGLYTWFRDLGSYQKTSVIIGSCALFCGTGYCVYKLYSRKRKVELYDESPNNGQEHKPAVQKRVLVLGLQGCGKTTFLTALANLGSGAGGNETKPTEGFNVMCVTTNGVHLNIWEIGGGEKVQNYWSKFTADTDLLMYMVDSCDAEHFTEAKEKLNELLKDPCLQNVPLLILASKQDKTGARSISVLQKILDVDGLLDTRCVECFGIQISPLGPELQGIEIVQNSILKFCTET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQE0</accession>
    <name>A0A6S7FQE0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053308</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000021">
        <property type="protein sequence ID" value="CAB3976940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQE0"/>
    <dbReference type="OrthoDB" id="6155538at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="216"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="216"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="232"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="247"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31918" checksum="5CA8FE21304E2756" modified="2020-12-02" version="1">MRLVGSPKLKYSPRFPQKLSFQSWMQYFQEQGLPEVLKSDNGPPFNGAEFESYAKHCGFTHRKITPYWPQANGEAERFMRTLQKCIRAAIIEKKNWKQAMNQFLLNYRATPHSTTNISPSESLNNRKIKTMLPEMPSGSKPEQTAMAEYDARKKEQMKSCADNRRGAKESCIKPGDTVLLKQPKENKFSAPYNPQPFVVEKKKGTMVTAKNDSKVVTRNSSQFKVISTRSAKHNDKEVEPKVPRPSNPQEQKTVQQRPKRNVRQPARFADYVNYEPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSN8</accession>
    <name>A0A6S7FSN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000041">
        <property type="protein sequence ID" value="CAB3977321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSN8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="51" mass="6170" checksum="F20C0F7691E13259" modified="2020-12-02" version="1" fragment="single">DQSLDFQQEKLGNAHSSQPMLDEMSRRILLPRRFPVKRWKEAQEFLQCPKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWE9</accession>
    <name>A0A6S7FWE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A075537</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000132">
        <property type="protein sequence ID" value="CAB3978680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWE9"/>
    <dbReference type="OrthoDB" id="10221010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="130"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="16886" checksum="D4732F25E863EF26" modified="2020-12-02" version="1">MSKEVYDAVLLTAEAVGVSMASKKLLKEPLGAGYLFKMFDKNGYAEEAKRHNMAMESLTAKREKYLEKVTDRRNKVAQPREELAETNSDIKSTNQSLELVRRINELTRKTLPRKPQLSNHYKPSPEMEEYMALFGLLVGGAVGGAAYLML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXK0</accession>
    <name>A0A6S7FXK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040461</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000707">
        <property type="protein sequence ID" value="CAB3984205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXK0"/>
    <dbReference type="OrthoDB" id="5986555at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33096:SF1">
        <property type="entry name" value="CXC1-LIKE CYSTEINE CLUSTER ASSOCIATED WITH KDZ TRANSPOSASES DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33096">
        <property type="entry name" value="CXC2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="347"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="348"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="46607" checksum="983EA7248E0ABB8C" modified="2020-12-02" version="1">MERMWSYLRPSAKITKEMTPSHRVDALTDFLFHYGRKSVAQIGDRLCDHMKKAVHMKADANDQLSVDAASSTDIAERYVVKVKEYYDTSKKLKEINLANEEYSILSSKLNSMNEQLKKFENGQQCWSPDHPTFMLYINKAEASRRNELLCDMRGQCLERWFLLQLMRKYADRQAIAKICGQITKTTNAIKKLVKQYGRKITEHMHSKYPPSVTFEEITDLNSTIWNCLEEEIECNSPVPYYIRHKIVDFQHIIHRCTEEVKLIKEEMTRVIRFYSSKISALQDWSDELKNESTESCGLLTMVLTKKDLINMVLQHLKASFSLYMDEDRTELEKHGDLPEEDRIFSTCSDDDEEEMELDDNGDGEDELEEDTLDLFISILNEEYGGDSDQSDVELSDDDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0G0</accession>
    <name>A0A6S7G0G0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">T-box transcription factor TBX20-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A019510</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000409">
        <property type="protein sequence ID" value="CAB3981606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0G0"/>
    <dbReference type="OrthoDB" id="7442607at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001708">
        <property type="term" value="P:cell fate specification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048731">
        <property type="term" value="P:system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.820:FF:000008">
        <property type="entry name" value="T-box transcription factor TBX20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.820">
        <property type="entry name" value="Transcription factor, T-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008967">
        <property type="entry name" value="p53-like_TF_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046360">
        <property type="entry name" value="T-box_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036960">
        <property type="entry name" value="T-box_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001699">
        <property type="entry name" value="TF_T-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018186">
        <property type="entry name" value="TF_T-box_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11267">
        <property type="entry name" value="T-BOX PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11267:SF190">
        <property type="entry name" value="T-BOX TRANSCRIPTION FACTOR TBX20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00907">
        <property type="entry name" value="T-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00937">
        <property type="entry name" value="TBOX"/>
    </dbReference>
    <dbReference type="SMART" id="SM00425">
        <property type="entry name" value="TBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49417">
        <property type="entry name" value="p53-like transcription factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01283">
        <property type="entry name" value="TBOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50252">
        <property type="entry name" value="TBOX_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="25"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3981606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="408" mass="46617" checksum="26079CD0510D150B" modified="2020-12-02" version="1">MDPISTTESVSLSEKATAFSIDSLISAEKEEKEDKEVHSPTKRSIECSAGLNDGHAKRQKTRSHENSENIGEDTFIDNVDVILEGKELWDRFNELGTEMIITKAGRRMFPTLRFSVTGADPKASYLVLMDIVPVDDKRYRYAYHRSTWLVSGKADPPAPTRLCMHPDAPFTGEQLMKQPLSFEKVKLTNNEMDEQGHIMLNSMHKYQPRIHIVRKREHIASVINLKSEKTRTFAFDETQFIAVTAYQNQLITRLKINSNPFAKGFRDSSRLLNPEWRERNKDFCDQVSRIFTYHDPSFSPILQPSPWRMDPHYRLPSDPGHPPYLTSPYKPGCTFVFDENIPQTFLPPMTASVQRPPNLCYPVSFPTTIAGTPDCMSPRTSSLLAYLHGGHLVPRMSVTDDNIFNFKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3E7</accession>
    <name>A0A6S7G3E7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Proline-rich 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000288">
        <property type="protein sequence ID" value="CAB3980401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3E7"/>
    <dbReference type="OrthoDB" id="5975713at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22838">
        <property type="entry name" value="Gal_Rha_Lectin_nemgal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000922">
        <property type="entry name" value="Lectin_gal-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043159">
        <property type="entry name" value="Lectin_gal-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46780">
        <property type="entry name" value="PROTEIN EVA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02140">
        <property type="entry name" value="SUEL_Lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50228">
        <property type="entry name" value="SUEL_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="345" mass="38482" checksum="773F3F709F5A5DA8" modified="2020-12-02" version="1">MGRIILLPLLNSIFLVHEICLAVNKNATLDRNGLVGAIPEEDLIWKKALACEGQKLYIECPKIYNRIQVRSTFYGRKDAVTCKHPELPSDKICVDQNATVNNIVMDLCQGEARCEIAVTNDFLAQFGTIICPNVYKYLDVKYRCVPETALPNAPALSPYATSVTSTVTSNHAPVQCCYVVPDIGTSHTSVGGTIVRHHQGIQSVEERIVSQSRPVQQIHKVTEIIHSHPVQGPETRPAKVPLARLTLPGGSKLQLNTMIEGWPKGHTHQIQVGSPVIRSNIWGLQRKHVITRPYLSLRNSTHDAYRTLKTKTKGAAMGTKWEQIGSQKDCQSYEKTLRDHRGWEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4Y0</accession>
    <name>A0A6S7G4Y0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carboxypeptidase D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000883">
        <property type="protein sequence ID" value="CAB3985533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4Y0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14808" checksum="0926009BFF9404BC" modified="2020-12-02" version="1">MRPTILPLLTKLYSQPQKSSGNTSVNSLKSEKPPIKSEEMYGIMEQKLRHVCDKRAGGNFLNISSVDILADLTHTQEEIDTVSKSTVKQWKSKEWYKHKSGFITGSIAQQSLNMQNSLDKGLGRKVSSLVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6N8</accession>
    <name>A0A6S7G6N8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ubiquitinyl hydrolase 1</fullName>
            <ecNumber evidence="5">3.4.19.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A054784</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).</text>
            <dbReference type="EC" id="3.4.19.12"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
            <location evidence="2">Microtubule organizing center</location>
            <location evidence="2">Centrosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
            <location evidence="3">Perinuclear region</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase C19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.12" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020001401">
        <property type="protein sequence ID" value="CAB3988894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6N8"/>
    <dbReference type="OrthoDB" id="5984635at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005813">
        <property type="term" value="C:centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048471">
        <property type="term" value="C:perinuclear region of cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.190">
        <property type="entry name" value="CAP Gly-rich-like domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036859">
        <property type="entry name" value="CAP-Gly_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000938">
        <property type="entry name" value="CAP-Gly_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11830">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S3A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01302">
        <property type="entry name" value="CAP_GLY"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM01052">
        <property type="entry name" value="CAP_GLY"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74924">
        <property type="entry name" value="Cap-Gly domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50245">
        <property type="entry name" value="CAP_GLY_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0788">Thiol protease</keyword>
    <keyword evidence="9" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="12" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CAP-Gly" evidence="14">
        <location>
            <begin position="632"/>
            <end position="676"/>
        </location>
    </feature>
    <feature type="domain" description="CAP-Gly" evidence="14">
        <location>
            <begin position="751"/>
            <end position="795"/>
        </location>
    </feature>
    <feature type="domain" description="CAP-Gly" evidence="14">
        <location>
            <begin position="865"/>
            <end position="908"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="437"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="10"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="50"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="437"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="471"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3988894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1120" mass="127173" checksum="40E2F8F2895E7EAA" modified="2020-12-02" version="1" fragment="single">MGNDNLLDSIKPEVDENKANEEPECNEGTLTNHRDAEKSGAGIGTSADNKQQKPNDASKDNPPSAPPTSTDIVEMEPKVSKQSQDTVIKSQKYFFLKKFKRKLIGFSPKKRYLEERRASNAPKNDKSMSFEHRKNAHIHSFYILLKDKTAKKFDKSYISSNLKFISLLKGEILIPNVTTAADESNGLIRLRHYEKPSYYCDCPLGDVKGIEEEEAKLLLPISTMADRFTIFDSKSLLQNGKKMTPASYVYVKVRSVAGGSKQELQGIVRYKGPLPKEFGTWFGVELLVWGEAQQMEHIKERDSSNVKLILASLYQLRLCEDQIETKNESKTDTKEVNITDESNSGVFTKVKKFAEEKQDKNNAGHEIDDKVWIYINDKLYGGHIKYIGQIPGGRETYAGIRLDHDVGKGDGEYYALRNNPPTLPQMSEDILNMESKFSKQSEDEVTKNQEYKERKNLEKSRAGIGTSFNEQWKESKNENESKRKENEKKRPTGYQKDEYSYTFYILLRGRLAKKQDKCYSYSRADSKYLLEGEILIRNLTTVVDSTNGTLRLHPYGKATYFCDCPLEEIKPLEDEEAKLLLSFKSNDERIKFYINSNLDSGKKMTIGSNVYVKIRSVGGGMQELRGVIRYKGPLPEEHGTMFGVELLEGKGRGITDGLFKGKRYFKCESECGVFVSLEKLRLCDATDESLFVKVKNKIVEGISNGFMSPVEQANEEAVSEKQDKSMGHKQHDRVWVFINDKPFAGFIRYIGRVPGYYGIFAGIEMDNAVGIGNGEFYGKQLLTCPMDHAHFTLIKNVLSELEFQELYGQPKDATVASGPCPRNPTSTNHHQMANTRIQSNLEFGSMVEVSSKNQTPRYGKIRWLGFVPNSDKKIAGLELEEEMDSCTDGTFLGKRYFTCPNKRGFFVHLHNCLPDSRFPRNFVENHADKRLSGTDFGSYYSPIIEDVFIPAPEKLNVYLKQGKNAQGIQGHHGSCYLDATLFAAFAFSSVMDSILLRPKHEKDIDDYEKVQTVLRNNIVYPLRSHGFVRADRVLELRQLLDKLGTVTGLVGEEKDPGEFLTTLLHQVLKSEPFLKIKSGKDVSNEYFYQVLADKDVERVLPSVEELLKKSFHQSDLKLTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G728</accession>
    <name>A0A6S7G728_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031976</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000780">
        <property type="protein sequence ID" value="CAB3984762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G728"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="23378" checksum="EB795EB630B38920" modified="2020-12-02" version="1">MEWLQMVTPEEIACVGKKVNTREELEAAVRKHAESRIKRKHTYDPICSECGSKSIVMIDGADTCTQCGASNMNNFSYYVSYNYNKDDYLKKKSCHNRVRWFERHLFEHVASMDRDTIREQFRSIVRCIQRLRLQTGRNIVRYKFYQLRIASMNGITLRNPPEDIKTQRIVDILEGRLYGKVFVELGWKPEKCEYYNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7R0</accession>
    <name>A0A6S7G7R0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">WD repeat-containing and planar cell polarity effector fritz homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A057881</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
            <location evidence="2">Cilium axoneme</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the WD repeat fritz family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000817">
        <property type="protein sequence ID" value="CAB3985012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7R0"/>
    <dbReference type="OrthoDB" id="10013020at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097541">
        <property type="term" value="C:axonemal basal plate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044782">
        <property type="term" value="P:cilium organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045184">
        <property type="term" value="P:establishment of protein localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007399">
        <property type="term" value="P:nervous system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024511">
        <property type="entry name" value="Frtz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13667">
        <property type="entry name" value="HOMOLOC-13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13667:SF5">
        <property type="entry name" value="WD REPEAT-CONTAINING AND PLANAR CELL POLARITY EFFECTOR PROTEIN FRITZ HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11768">
        <property type="entry name" value="Frtz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="12" id="KW-0966">Cell projection</keyword>
    <keyword evidence="9" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0970">Cilium biogenesis/degradation</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3985012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="781" mass="87359" checksum="3F6DA3CB843A17C6" modified="2020-12-02" version="1">MAATLWGHLHAWTFKRHAEKCDDLGVHIYHDKTTGSKDDLCSQSRQKWEESRNVAWTLKNKRPERLKDNLTEVEEMIQASQIVQVLWSSARFIQVLLSNCTLISFMVAKNSGDVGKIFIDKSLCGKLTDKINAGVWAEDFMLLSFCDKSKICCINFARKLPTDFRKLEKLAVLEPKISFIDLPGQVGGRLNRCLSLNTSKDMVSIWWSLASEEAWPWSPVAGDRARANVILIGVKGGKFDVLAYLRTECDPIHAAFSSQNPHHILTIESTPKNEGDNTIDSCVYEFYKNGVNRVSATSISLQAAVSCVAWNKAADKLLLGCKDKSLVVYDCHRLVTQRRNIPFVPSEIAWHPVGSVVFIFSLQGDIQVFDMALAPVLLQLAGEGQNESRIFRMSEYFRDIKLSHAVWSCDSPLNFVSDGDVACSDNMFMVFQDGGLLCNLRIELGSLTLGRIGPREVIEEYIKHNQAEQAVNFVNSINWNDDGSSCFACLSAVMNYLLKFPLTDKREGLLEETLGCFYTPSRPINDVVVLQYREPLSRWSRRFFYHLLRYKKFQKAFMLAVDIGAADLFMDIHFVALDAGNIALAENAKNKALEIDSELLSTETDSSSGVEDDDCISIEEENNRVENGSLNRAGLNILANQYEAGNNTQDFVEQNAITGQSEVAEVNGEAELPENQQNSAMVLPLNTNITQDPDVWALANILANQYEDGNNTQDFVEQNATTGQSEVAEVNGEAELPENHPNSTTLLPLNTNITQNPDVWARANNIELETTENDGEEVIYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA71</accession>
    <name>A0A6S7GA71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Poly [ADP-ribose] polymerase 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000954">
        <property type="protein sequence ID" value="CAB3986022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA71"/>
    <dbReference type="OrthoDB" id="101791at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09917">
        <property type="entry name" value="F-box_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="36400" checksum="5574129D96E47669" modified="2020-12-02" version="1">MTIVTNMAAEQGQETVTRQDYFFKLPNEILSMICLHLSLRDMARCMRLCRRFKTILSSREFRKDYLKSKVSFVQVNKDGAQHKLTRFNLDKLLNKWYCYWDDSDEMPGANDPTRYIFRPFPKMWSNGIVTPANFEPFAQDCDYNSFNRALYLLLKLRRMCRKFQVRTMPICSEMNSVPDICLFPWSHDNLPTPRDVLEIFNAHEVLAEDIDDVHVAEELGYMTGFRPSYIETEVDFEFYTQSLNNTFSKIKKKNQYETQLFQWLHKLFQPSLMFSCGTHSIEPQLYFHLTVLSPGWVGGIFTIVRLNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GES7</accession>
    <name>A0A6S7GES7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001534">
        <property type="protein sequence ID" value="CAB3989683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GES7"/>
    <dbReference type="OrthoDB" id="8906575at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11903" checksum="3224F303D2C3E8CF" modified="2020-12-02" version="1">MIELGRYENIPREDRICKVCQAGEIETEHHFLTSCEAYSSLRENFLNDLESDPTNETDLNEHSLSVEIMKSTDKETVIKLSKFISLCFEKRSKCLEARNADSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFL7</accession>
    <name>A0A6S7GFL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Kelch 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A020003</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001667">
        <property type="protein sequence ID" value="CAB3990475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFL7"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.420:FF:000001">
        <property type="entry name" value="Kelch-like family member 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017096">
        <property type="entry name" value="BTB-kelch_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412">
        <property type="entry name" value="KELCH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412:SF480">
        <property type="entry name" value="KELCH-LIKE PROTEIN 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037037">
        <property type="entry name" value="Kelch-like_protein_gigaxonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3990475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="506" mass="56982" checksum="E003EF3B863A7BCA" modified="2020-12-02" version="1">MRRTDLTSPLIIIPPAIISFPARVYRTVCILLHLFDRNRNNINMAENCTQDSYEFFASDTCTTAFEKMEECFSSGELCDVTLIVGERKIHAHRIVLASVSPYFKAMFTNKMSESDQDVITIKDVEEDIFLLLIRFIYSHRVLIHVDNVQSLLQCANILQLDSIVNACCDFIYSHLSISNCLSVRDFVEAHGCVKLVRKVDAFIKLHYLEVTKSQEFLDISVDHLKQLLSGSNLNVPKEEDVFESVIKWIRHSSAKRQHHIGLLMPYVRLPMLPVSYLISMVEKESFVSKNLVCRDLIDEAKNFHLCPEKVPLSARIFPRKSYSGMLFSIGGRGKGGDPFSKIEIYNWLENCWTPGPRLLMPRRHVAAAEIDGVIYAVGGHNGSEHLNTVESFDSTSGSWQLCKSMVICRRGMSVGILNGMLYAIGGLDEATCFNRVERYDPKADEWTEVAPMKVQRGGVAAVGFDGFLYAVGGNNGGCSLSSVEKYDPYRNTWVDVASMNQERAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GI40</accession>
    <name>A0A6S7GI40_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A039508</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001363">
        <property type="protein sequence ID" value="CAB3988686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GI40"/>
    <dbReference type="OrthoDB" id="7765381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1460.10">
        <property type="entry name" value="GTF2I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004212">
        <property type="entry name" value="GTF2I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036647">
        <property type="entry name" value="GTF2I-like_rpt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011124">
        <property type="entry name" value="Znf_CW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02946">
        <property type="entry name" value="GTF2I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117773">
        <property type="entry name" value="GTF2I-like repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51139">
        <property type="entry name" value="GTF2I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51050">
        <property type="entry name" value="ZF_CW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3988686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="399" mass="44886" checksum="267DAB091764BE3F" modified="2020-12-02" version="1" fragment="single">MGDKKGKYFIAALQNVTEKLEKDTVNVIYTDIFSKDNSSALEEATGLKGPFPYKRQLEFDVEGLPGLLAFRKPSGYGTSQLQSILQCKDKIKFKRKEVNDRTTSAFTTDAITITDSVSVPTPSMTQTIMTQTLSMTNVNNPNAISNPSSLHDHVITSDQNTLNDPHAINNYEILPDGTVPFTDTITSTFATAEISVTAGTSTTTSAETSTTARTSTIKPWNIGYRKRRVKPHIKIYPFWTEVYINAKGGPVVGEGIIIPGFNVKDEQVLPFSGLYRKIFVKKVYECNKDHDLIAGEYIIRSCVLLTPKHTECVEGIGSLVNIEICKDFRHIKDDSKKEELCSTLACQCPTSTEVEWVRCENTDCKKWYHIHCVGVARKEELPERWWCGIETFNENYFFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GID7</accession>
    <name>A0A6S7GID7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">15-oxoprostaglandin 13-reductase</fullName>
            <ecNumber evidence="2">1.3.1.48</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">15-oxoprostaglandin 13-reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A037945</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>13,14-dihydro-15-oxo-PGF2alpha + NADP(+) = 15-oxoprostaglandin F2alpha + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50588"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:133374"/>
            <dbReference type="ChEBI" id="CHEBI:133409"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="6">
            <dbReference type="Rhea" id="RHEA:50590"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>13,14-dihydro-15-oxo-prostaglandin E1 + NADP(+) = 15-oxoprostaglandin E1 + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50584"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57401"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:133408"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="7">
            <dbReference type="Rhea" id="RHEA:50586"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>13,14-dihydro-15-oxo-prostaglandin F1alpha + NADP(+) = 15-oxoprostaglandin F1alpha + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50592"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:79072"/>
            <dbReference type="ChEBI" id="CHEBI:133411"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="5">
            <dbReference type="Rhea" id="RHEA:50594"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NADP-dependent oxidoreductase L4BD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.48" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020001900">
        <property type="protein sequence ID" value="CAB3991688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GID7"/>
    <dbReference type="OrthoDB" id="809632at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047522">
        <property type="term" value="F:15-oxoprostaglandin 13-reductase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006693">
        <property type="term" value="P:prostaglandin metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000121">
        <property type="entry name" value="Prostaglandin reductase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041694">
        <property type="entry name" value="ADH_N_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045010">
        <property type="entry name" value="MDR_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43205">
        <property type="entry name" value="PROSTAGLANDIN REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43205:SF5">
        <property type="entry name" value="PROSTAGLANDIN REDUCTASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16884">
        <property type="entry name" value="ADH_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidoreductase N-terminal" evidence="9">
        <location>
            <begin position="22"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="Alcohol dehydrogenase-like C-terminal" evidence="8">
        <location>
            <begin position="186"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00033119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00048290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00049070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3991688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="40221" checksum="275B20EF65888506" modified="2020-12-02" version="1">MTAQEGQNIRIFLRNRPGESNPVSIENFGIETVTIPECKEGEIIAKTLCLSVDPYMRVQFNADPGVAYVNSWQIGQTFNGSGTGVIVESKDESFRLGDILHLPLCWPFQKFVNFNPQALLSNADPTIGLHALQKVESEILKKHPSLILGLLGVTGLTAILGIREKAHIIPGKNQTVIISGAAGACGTAAGQIAKLEGCGKVVGICGTDEKCKYLVDELGFDVAINYKTAKNIREKLLECCPEGVDAYFDNVGGDISNQVIKCMNKDSHVVLCGQISQYDKDLPYPPPIPDEITQLLKQNNITRERYTVLNYPEKFQESLVQLEAWFKEGKLKNRETFEMGLENAGKAFVSMMTGKNIGKQIIQVDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GR64</accession>
    <name>A0A6S7GR64_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A052704</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001123">
        <property type="protein sequence ID" value="CAB3987120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GR64"/>
    <dbReference type="OrthoDB" id="6627680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="2">
        <location>
            <begin position="277"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="3">
        <location>
            <begin position="429"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="669"/>
            <end position="703"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="694"/>
            <end position="703"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3987120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="703" mass="80661" checksum="B4D96C2E1A431B40" modified="2020-12-02" version="1">MKGRSKKEDEDSIVFEFFQSPYTLPKLSLAVVSGLNFSVAVYNWFLPDDHYIYSDHKRSLKYTSISTLMTTLESARICEGISKEEHIVSLCEDPSPTCGSSSVMQHTIPIERKLYEEDGPPFQTRVFIRSEHCELLCNDISCSKCIQKEKSLSKMKSSTSKKTTEPLKGNAPLTGSKKEIESNSIPIDETMEKDILAILADRSDEVTPHMKVFWEQQRKLLAMPKFGRRYHPHIICFCLSLHAKSPAAYKELRESGVLVLPSERTLRDYRNFFKPRAGFHPDNVERLKNQTSRYFDIQRYVVLSFDEMKIQSKVVFDKHSNELIGFVDLGEEELNVRGAASDLKYALAYFLTKDVTSYQIMHLFWKAVSILKLLCNLWVCAAVSDGASPNRLFYQLHADLIEPDVEVVHYTPNLFAPSRNIYFFSDAPHLLKTTRNCLFNSGSGKRTRSMWKNGKYLLWEHIAKLYYSDLDSGLHQLPKLTVDHIALKSYSKMKVSMAVQMLSNTVAQALQRHCSSGEAQGTTNLCKMMNDFLIYQRKRNALLAPYRSADDERFDWLQNVFLEYLTNWKSSTESREGAFTDDDRGRMFLSIQTFKGLTMTVKSAIAITKFLLSEGFEFVLTERFCQDDVEEYFGYQRAQERRSDNPSAAEFGYNDLRIATLRDVAPQSIEGNVSGRHSGKKSKWCNVSDEPLPKKKTKKKTIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSW5</accession>
    <name>A0A6S7GSW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Deleted in malignant brain tumors 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A087532</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001210">
        <property type="protein sequence ID" value="CAB3987651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="9"/>
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    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.250.10:FF:000001">
        <property type="entry name" value="Lysyl oxidase 4 isoform X1"/>
        <property type="match status" value="4"/>
    </dbReference>
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        <property type="entry name" value="neurotrypsin isoform X2"/>
        <property type="match status" value="3"/>
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        <property type="entry name" value="Scavenger receptor class A member 5"/>
        <property type="match status" value="3"/>
    </dbReference>
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        <property type="entry name" value="Laminin"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="10"/>
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        <property type="entry name" value="EGF"/>
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        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
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    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
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        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
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    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071:SF18">
        <property type="entry name" value="DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071">
        <property type="entry name" value="SRCR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
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        <property type="match status" value="8"/>
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    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
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        <property type="match status" value="9"/>
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        <property type="match status" value="10"/>
    </dbReference>
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        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
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        <property type="match status" value="9"/>
    </dbReference>
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        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="10"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="625"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="638"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="668"/>
            <end position="678"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="732"/>
            <end position="796"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="745"/>
            <end position="806"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="776"/>
            <end position="786"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="963"/>
            <end position="1027"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="976"/>
            <end position="1037"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1007"/>
            <end position="1017"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1069"/>
            <end position="1133"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1082"/>
            <end position="1143"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1112"/>
            <end position="1122"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1346"/>
            <end position="1356"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1408"/>
            <end position="1472"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1421"/>
            <end position="1482"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1452"/>
            <end position="1462"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
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            <begin position="1515"/>
            <end position="1579"/>
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    </feature>
    <feature type="disulfide bond" evidence="7">
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        </location>
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    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1792"/>
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        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
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            <end position="2000"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1949"/>
            <end position="2010"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="1980"/>
            <end position="1990"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="2043"/>
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        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="2056"/>
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        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="2087"/>
            <end position="2097"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="2211"/>
        </location>
    </feature>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3987651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2211" mass="244671" checksum="AD900A4A0C4823C4" modified="2020-12-02" version="1" fragment="single">QHYRKSSSEVFLYRNSKFRHVTCRYRSSGDNIFSESISRFLRFQWAQIFFSSYAVSPNNCAGISVPTRLSFFGKKTSTMLGLLSSLTCVLTLSWGCLGHCSTSALLPRSAKFSLDGQYFHTKPISLMMIDLTASKVTSICKQMELNAFNHRSNLFFLHIHLEICAYLQPWHDVSEHAIKGLASTPNGFLDICQNQWGWLVRRILLGCSTSYPLHDNSIQGINSNLTHGTMAGRDFSSTNARLRQWFPQCPARPQLKHKFFSTKNFFLCSIVESVLHSSLQCSSWQNMQCGICFPAFLRVNQFLSLRLSLGGFELTSKLSHLFLLNQACRFLIRPSIFQSSHFSSTLTMSGLTWGNLFRVVITKPCNISPCPKIDYFVQMCINYRFHLICDLLPLAQLIQGDIQTFLYLIWVFYRLVDFHSAANFSSHINFSRSRAHCASSISFKLLYTCNKIIYLVKYGVCSFLYNFNFCYFSFSISLSISTSFCFSAVSSLIVISSTSYKSINSQTLALLTKPLYFPNMKYPKLLSWYLIIRNISFNLRAKGADSFAVSILKFTKSCKNAIVMMQTLNWTNQCPLFMTVRHIFEINSANAFVSPGPDKALQGPSISNGTGRVEVLYNGQWGTICDNSWDINDARVVCRQLGYPYARALRGNQVPDGTGQIWLNYVRCTGNEENLISCSHNGWGNHYYCRHYQDAGVECSFIGVSVRLRGPSSSNGTGRVEVLYNGRWGTICDDSWDINDAKVVCRQLGYKYTVRALQGRYVPDGTGQIWLDDVSCTGGEQNLISCSHRGWGSHDCTHYEDAGVECSATDVDECSRGLDNCDNAYRQTKRIDCNKPTSRLTQNRSYMIGFGAVTGIMPFFAVVCARNIMTHESCISKVFYGYTGNGTVCQEIDECSLSLDNCHPNSNCTNIDGSFLCTCGSIYEGNETLCQEKLIAVRLIGPSAFNGTGRVEVYYNGRWGTICHNYWDINDARVVCRQLGSPYVVRSLRGNQVPDGTGQIWLDNVRCNGSEQSLINCSHNGWGNNNCGHHQDAGVECSSGVSVRLQGPSISNGTGRVEVLYNGQWGTICDNSWDINDARVVCRQLGYPYAIPLRGYDVPDGTGQIWLNYVRCTGNEENLVSCSHNGWGNHHYCRHYHDAGVQCSLTDVDECAQGLDNCDSNSQCINTDGSFLCRCNHGYTGNGVYCYDINECSRSTDNCHSNASCINIGGSFFCTCYSGYTGNGTFCQEIDECSLSLDDCHPNSNCTNIDGSFLCICDSKFGGNKTLCQEKSIAVRLIGPSASNGTGRVEVFYDGRWGTICDNYWDINDARVVCRQAVGLPYAVKALQGYQVPDGTGQIWLDNVRCTGNEQSLINCSHNGWGNHNCRHYQDAGVECSSGVSVRLRGPSSSNGTGRVEVFYNGRWGTVCDDRWDINDAKVVCRQLGYKYTVRALQGSYVPDGTGQIWLDEVSCTGGEQNLISCSHGGWGSHDCTHYEDAGVECSATGVSVRLQGPSSSNGTGRVEVFYNGRWGTICDNSWDINDARVVCRQLGYQHVVRALRGNQVPDGTGQIWLNSVRCTGNEENLISCSHNGWGIHYCGHYQDAGVECSATDVDECARGLDNCGNNSQCINTDGSFLCICNHGYTGNGVYCYDINECYRSTDNCHSDASCTNTVGSFFCTCEGGYSGNGTVCQDIDECSLSLDDCHPNSNCINIDGSFLCSCDEEFEGNETLCQEKLIAARLRGPSSYNGTGRVEVFYNSQWGTICHDYWDINDARVVCRQLGYPHGALRALQGYQVPDGTGQIWLDNVRCTGNEQSLIDCSHNGWGNHNCTHYQDAGVQCSLTDVDECARGWDNCGNNSQCINTVGSYSCRCNLGYSGNGFYCYDIDECSLSVHDCHQHAACINIDGSFLCTCDREFRTDCEDKVIAVRLRGPSSFSGAGRVEVYYNGRWGTICDDYWDINDASVVCHQLGYQNALAALQGAYVPDGSGQIWLDDVQCTGYERSLERCSHSGWGSHNCGHYEDAGVSCSSTDPRIRLQGPLSSKGTGRVEIFVNGRWGTICDDLWDINDARVVCRQLGYQYAVRALQGGDVPDGTGQIWLTNVRCVGSEQNLLSCSHDGLGNHYCGHGEDAGVECSSGAEIYDDCVEAHRIACNGGNSLAGIYNVKARNSDGYASTFCDNGANIIGCEGNGWTLVGRFSGDPLNYVTYFLGFGQKILKVVLTLLAKLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0A0</accession>
    <name>A0A6S7H0A0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A019360</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002792">
        <property type="protein sequence ID" value="CAB3996079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0A0"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013010">
        <property type="entry name" value="Znf_SIAH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632:SF3">
        <property type="entry name" value="KELCH-LIKE PROTEIN 32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04564">
        <property type="entry name" value="U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51081">
        <property type="entry name" value="ZF_SIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3996079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="529" mass="60071" checksum="7629CD7A0695CFF2" modified="2020-12-02" version="1">MARRRSFGGYEEERFQNEVDSTLLCPICRNVLKDPVQCPNEHYCCRSCIVKHLHENSETCPTCQQHLTEETLSKPPRLLTNMLHNLKIRCDHAKRGCQELMKLEFLDRHVKSCGYSPTRCTNPGCSQVINQHEKERHENELCHFRMVVCDDCKQQVLRKSSRVHPCFMRKEMDDLVKDMREVKLIQEEFTRNLMDQVARQNDVVDDLCHRMNNMKAEMEWNAKEASERCDLFTGRSKIFVCGGGDGKYALKSVESFSWPENSWTLEPAMKKGRSGPSAFVHERQIYVSGGWTGAEYIDTIESLNVDEENLEWIQSPLKMPIKCQGHTMVSHENSAILTGGLDGDNASDGIYEIKLNPPYTSKLLTQMPEPRYKHSCHIIDNQVVVVGGRTSKYLAGAKNTVYAYDMNNNECKTLPPLPFPITNMASVSYKSNVILIGGINEKGQTLNSVVMYDVKTGKIKMLPCLNHKRSGSAAVITGNVIIVMGGRDYETVAFLNSVEYLDLSSNIWKELSPMEAKRRKATAVIKPIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H814</accession>
    <name>A0A6S7H814_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003963">
        <property type="protein sequence ID" value="CAB4000934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H814"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="367" mass="41123" checksum="9B09A57253B2E153" modified="2020-12-02" version="1">MMRILNKGLKTIVIRVVANESPLVHFGTQAPAKVTNISDNPRSKRRLELVQNSGKGNMQVQLTDNSKTIISPSTDSVILPLERHAKKHEESIRNISEKLQNKTRELECFDNKLSDACQQNGGHLSACGNCHLKIGHTRKSCTFSPCRSAFSCGILAKHNDQRSTRANLTKEVSKLETEITKARSDMHSARTALENVNNSSKKRIEDILVKEEPHRYITSGRRNWLVLNKDVMLLQSKLKGSLPTRNNVMNLLNSLVRETSVSTSTKTTKTSTHSVVIHGTDHRMAPQKRVLEEEYGINFPTKKLCSKSNNQLCLDGQDKSDFHMALKIQQQEIENVSSDSVIDEDDNDDLQLEADAAAALLHLKARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HA75</accession>
    <name>A0A6S7HA75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A033647</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002191">
        <property type="protein sequence ID" value="CAB3993130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HA75"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13975">
        <property type="entry name" value="gag-asp_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="5" id="KW-0229">DNA integration</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3993130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="948" mass="107436" checksum="0CAAC84ABB8E5566" modified="2020-12-02" version="1">MATSSGSMVQPMPPFDPDSEIGTNLAPKWKIWIEDFQMYLVATGITDKKRQRALLLYQAGARVREIFRQLPDTGDDLETAVAKLNEYFEPQKHRLYEVYKFRQAAQENNESIDQYHTRLRSLAERCQFGNMDFDIMLQIVLKGSSSRLRKQALRDPKMTLKDLLIAGRQIEMSNFQVADIEQKQFERQELHALRKNTRQQPSKGTCRNCGGEWPHEKGNCPARGKECRKCGKLNHFARQCRSSKPDNEVPNHYPESNRRGNKIRPVVGPPDNQSESSSSDESSYCYAVKTTAKNNPTTKVTINKHQVKFTVDTGSTINVIDQSTFKQLGPITLRKTRIKAYPFNGTVPVKMKGKFQTTVESRKKITVATIYVTEADGGCLLSANTAEDLGLITLHLNHIKTTKPNSQAAQQGNIPDKGVQRIVNKHSRVFQGQGKLRNKQIELIIDEAVKPVAQKQRRIPFHLREKVERELSKLEHDDIIEPVPDTEETEWISPLVIVPKKDDKIRLCVDIRAANNAIKRVRHPIPTVKDVSLELNGAKFFTKLDLTQAYHQLELSPSSRHITTFVTHTGIYRFKRLNYGTNSAAEIFQHTLQQVLQGIKGVRNIADDILIFGSTYEEHNTSLEECLQRLEDNGLTLNLGKCLFLKQNLDFFGLVFSKDGVSQDPKQISALANSTTPTTPSEVRSLLGLANFSAQFIPNFATITEPLRMLTHKNIPFTWRDEQENAYQTLKTALISKPVMSYFDPGKETVIIVDASPVGLCAILAQRAKGSTKTQTICYGSRALTSTEKRYSQTEKEALAIVWGIEHFHLYLYGAPFTLYTDHKPLELVYANPLSKPPARIERWILRLQQYDFKVVYKAGKDNPADFLSRHPLPGKAKESNIADEYVNFVTVAAVPSALTLSDISKAEDKDLCTLREAVETGHWVNNSQLEPYKYIKDEITVDSFIRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HH52</accession>
    <name>A0A6S7HH52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005157">
        <property type="protein sequence ID" value="CAB4005305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HH52"/>
    <dbReference type="OrthoDB" id="76966at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040401">
        <property type="entry name" value="CCDC162"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33331:SF13">
        <property type="entry name" value="COILED-COIL DOMAIN CONTAINING 162"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33331">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 162"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="40005" checksum="CACF12CCEAF5922C" modified="2020-12-02" version="1" fragment="single">AVSKVPAVSTMDLLDPSSHETSGTATPTQMTFTSHVKRDRNHVPKLAFVSAQLEKAWLRDIMLNEYVNKKNTMSTVLKNVDETMKLKRSLILSFCRALQMSVSDYSMRAQIIAYCGSLLDLMSHFPTTRDSHFMIGEEFEPKSDEQDKLVDDSTPTFTPRERKLLSHDGQHLVNLWYIPHYTEILTMFGKLSRAERTKSLKTVLQIVSSLHDICQYLCAHARLGSSHARLGSQKLEFSGVTADWGGTEGIGAELREIQKQINHLENSTDPEQIAEFLRHRRDVMYLEFDISVSHCVPDTFLQTGNEIACEEYRDIAVKTEVFQVHIQWTLGRGQTCSHYASLTASSPWQESF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HI55</accession>
    <name>A0A6S7HI55_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A022644</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RuvB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020004849">
        <property type="protein sequence ID" value="CAB4004266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10060499at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:002221">
        <property type="entry name" value="RuvB-like 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000010">
        <property type="entry name" value="RuvB-like helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057433">
        <property type="entry name" value="LMF1/2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041048">
        <property type="entry name" value="RuvB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010339">
        <property type="entry name" value="TIP49_P-loop"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25179">
        <property type="entry name" value="LMF1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06068">
        <property type="entry name" value="TIP49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17856">
        <property type="entry name" value="TIP49_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="11" id="KW-0347">Helicase</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="1423"/>
            <end position="1444"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="15">
        <location>
            <begin position="1424"/>
            <end position="1444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB4004266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1444" mass="165631" checksum="D3FBB9143EF53C18" modified="2020-12-02" version="1">MYGLWWQLTFFRCLKLELKREKIIQIFKLVQVSIITLLMFRLSLVLYTGEIDRGVQKNIPRFLVALQDRTYHLEMVHSYGLFRSMTGVGGRPEVIIKGGDTPTGPWKEFDFLYKPGNVNTRPSFVAPHQPRLDWQMWFASLGTYDRKPWFLSLLHKLLLGKSPVLGLLNDGHFEHQPPQFIKVDLYRYHFTENTTSFWNVLSQMSEKSWWSREYVSDYTPFIINRNDTESFEALIQKRFKLLRTDPTSRMRTKKLLFCKRMQSLHVSKVVLDLPVVGYNVIEEITRKSAVKVNQDKHTSFVDVLCCSLMDIERAEVEALVAFLQSDLCNVKTTKRDIVIQPGQSLKVVCHVDVGPLEMRVPVLFEPNLECPWVDGLEVPETLTVVSRGARVSIQVNNPSNRAIVLKRRTVLGTLQMVRSINPMDVIQSKNTNNNTDEPQCNGTEVGVSVDSIGSKEKLMGNRNSDGLPEVNLEGQTNKQKWKVQQMLKEEADSFSREGEIGDAKGLQMNIHLTDSVPVQKNYTAIPRPLYPEVKQYVEDLLNKGYVQKSRSSYSSPVVCVIKKDGNLRLCVDYRQLNKKTVPDRHPLPRVQATLESLDGNKWFTVLDQGKAYHQGYIDPESRHKTAFITPWGLFEWVRIPFGLTNAPGEFQRFMEHCLEGLKEDICIPYLDDIIIFSKTFDEHVEHVRLVIQRLRANGIKLKPEKCNFFQREVNYLGQIVSAEGYRLDPGKTETVRALKDSEPKTIGELRKRLGLLGYYRRYIKDFARIARPLFDFLQAPPDVNSNSSNVKNSVPSSQPIQWQSRHQNALSELLDCLISPPILGYLDYNQPFELHTDASLRGLGAVLYQMQEGKMRVIEYGSRSLNPAERRYHAGKLEFLALKWAVCEHFRDILYYAPNFTIYTDNNPLTYILPAAKLNATGHRWASELVDFTFDIKYRPGRNNQDADALSRMPVDLANYREMCTEEVPSENIKAVITGITAQQYGNATWVTALTLDEDLPDIDNDFLTNDGCRLCIGNYVILKAQKEDLSIGKVRSFKLEGRRPSIQDAKNELPNTKTLLRQWHKLKIGKDGLLHESGPYTQLVLPRKFLPSVYKELHQDMGHLGAERVVQLARERFYWPNMEREITHFVTNVCGCLKQRRPARPTCAPLCSITTCSPFELISIDYIHLEKSSGGYEYILRFMSFESQANTKFVQCPEGELQKRKEVVHTVTLHEIDVINSRTQGFLALFSGDTGEIKGEVREQINAKVAEWREEGKAEIVPGVLFVDEVHMLDIECFSFLNRALESDMSPILIMATNRGITKIRGTNYNSPHGIPLDLLDRLLIITTTPYEEKELKQILAIRCEEEDVEMSEDAMGVLTKIGQETSLRYAIQLITAASLVCRKRKGTEVQIDDIKRVYSLFLDECRSSQFLKEYQQEFMFSEETPAPQEQTTTDSMETDTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HN61</accession>
    <name>A0A6S7HN61_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080082</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005079">
        <property type="protein sequence ID" value="CAB4005043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HN61"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="41514" checksum="00C149FE114D7C75" modified="2020-12-02" version="1">MSGYSTVSSLTSISQNWFDSTDNSSTGRQGVHALFVDFRKAFNLVDHKILLDKLADMNVTRSFWLWIMSFLEGRTQQVNLQGVLSFTASCPAGVPQGSAISPTLFNIHINDMEENVSEQACVNTTKYADDCTMDTSIRIGESSDLQSALDSVQSWAVENKMELNAKKTKDMWINFTEAPSPPPLHIGDAIIEKVDNFKLLETWFQKDLKWNKHVEEITRKAAKNLYCLKECRRANLPVEVGLTTYLTKIRPILEYCSPVWGGLPRYLKDELERVQRRSLRIIGLPHGYLPTLEERRIEATSRELDTILRDPSHIFYQRTMEHNKHNYNRRGRDGIFKYAPFSGTERHINSFIPRAIRQELH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPZ5</accession>
    <name>A0A6S7HPZ5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P2X purinoreceptor 7 intracellular domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A035685</name>
        <name evidence="3" type="ORF">PACLA_8A056461</name>
    </gene>
    <organism evidence="3 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005686">
        <property type="protein sequence ID" value="CAB4007066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020023672">
        <property type="protein sequence ID" value="CAB4037975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HPZ5"/>
    <dbReference type="OrthoDB" id="5972251at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="124"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4007066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4037975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="25246" checksum="19A2A700175B896A" modified="2020-12-02" version="1">MNIDVLSPSSDSSSDSRTSSSSGESLDEFHRNILQGGEVLGYQFEPRRNTNSVSAELADNEDDQSMSIDEEESFVRLGNLDWCLCEHCQIMDREEECVCCHEIEQVANKNQEVMEYTKPTLPYNCITDNPGFHTVCLDRWVLQAAWLDYKQQYGSTAYEGPEHKISRHVAYRQLVRWCWGVVGKEIRVVLPSCAVSCIRAHFPPPGDEDDFEFVGFRFADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HSW5</accession>
    <name>A0A6S7HSW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005842">
        <property type="protein sequence ID" value="CAB4007589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HSW5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7426" checksum="37712F5C46AA5F3C" modified="2020-12-02" version="1">MGILKVSFALLERINSGRKWQYMSKNFWKSLCSRCILLAAQSVGCEFQRFGDDRNFAVKKIFST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HT02</accession>
    <name>A0A6S7HT02_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">XK-related protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A070596</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the XK family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006386">
        <property type="protein sequence ID" value="CAB4009245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HT02"/>
    <dbReference type="OrthoDB" id="5955564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018629">
        <property type="entry name" value="XK-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050895">
        <property type="entry name" value="XK-related_scramblase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16024">
        <property type="entry name" value="XK-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16024:SF6">
        <property type="entry name" value="XK-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09815">
        <property type="entry name" value="XK-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="37"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="173"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="235"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="264"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="324"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="354"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU910716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4009245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="46969" checksum="F53CECE187DC6F97" modified="2020-12-02" version="1">MRGKDELPFLILGVLLYTGDVISDSFVAYQYYKRDQWWWFGLTLTFVIVPFVVINIAALIQTKIFSSDENDPPREGRCLNLMCRSLFYFGLPIIFRYLEEYWQWKSAYCENLPCSRENCEDSDCESCKSHHKQKRKLAKSAYKLAWLRHIETVTESIPQWCLQVYIMLRQWYFPWYTLVSIVVSLLSSAWSITALEKARHKKNAPNELKCISKVVLWNAMCYGWQMFALTSRLSAIVFCAYVLRFYVVVFIAAHFLIATLYHDLWFGNGFGCLDLGWFLVIHYCLFFHVSESLLCKFHKQDNSENQHNFQDVARLRSGTLKINISLAFRNILMLIISVMVSEPDMPHIDEIKRIVIPSVPIVGLFGVLFCIGYFICDSISRAQVSPTDAIPEPNPAVQVENRDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HT46</accession>
    <name>A0A6S7HT46_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 14">NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A026612</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Involved in the interferon/all-trans-retinoic acid (IFN/RA) induced cell death. This apoptotic activity is inhibited by interaction with viral IRF1. Prevents the transactivation of STAT3 target genes. May play a role in CARD15-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes.</text>
    </comment>
    <comment type="function">
        <text evidence="14">Complex I functions in the transfer of electrons from NADH to the respiratory chain. Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Complex I is composed of 45 different subunits. Interacts with CARD15, but not with CARD4. Interacts with STAT3, but not with STAT1, STAT2 and STAT5A. Interacts with OLFM4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 14">Mitochondrion inner membrane</location>
            <topology evidence="1 14">Single-pass membrane protein</topology>
            <orientation evidence="1 14">Matrix side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 14">Belongs to the complex I NDUFA13 subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005518">
        <property type="protein sequence ID" value="CAB4006480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HT46"/>
    <dbReference type="OrthoDB" id="3308at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045271">
        <property type="term" value="C:respiratory chain complex I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009346">
        <property type="entry name" value="GRIM-19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12966:SF0">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12966">
        <property type="entry name" value="NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06212">
        <property type="entry name" value="GRIM-19"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 14" id="KW-0249">Electron transport</keyword>
    <keyword evidence="11 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 14" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="7 14" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 14" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="6 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 14" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 14" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00045908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00046797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU368034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4006480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17786" checksum="00FD8CBB5C418F80" modified="2020-12-02" version="1">MAEKAFKQEMPPRGGYASINIARNLKTRGPSGFMTFVLGTGIMLGGFLVVKYGNNKRRCKQNLKLFLKSVDFTVSVPQIIIVLCCRTLKMERQEAKVSLIPLIQAEQDRNMIRQMKENMETEEAIMKHVKGWKVGESVYHNERWVTPHSTELEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUR5</accession>
    <name>A0A6S7HUR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Dual specificity tyrosine-phosphorylation-regulated kinase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A011128</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006335">
        <property type="protein sequence ID" value="CAB4009096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="9332038at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050494">
        <property type="entry name" value="Ser_Thr_dual-spec_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24058">
        <property type="entry name" value="DUAL SPECIFICITY PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24058:SF130">
        <property type="entry name" value="SERINE_THREONINE PROTEIN KINASES-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="398"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="610"/>
            <end position="670"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="694"/>
            <end position="765"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="778"/>
            <end position="803"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="890"/>
            <end position="921"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="942"/>
            <end position="1049"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1117"/>
            <end position="1216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1232"/>
            <end position="1269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1300"/>
            <end position="1319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1473"/>
            <end position="1494"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1509"/>
            <end position="1544"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1551"/>
            <end position="1570"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="398"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="617"/>
            <end position="632"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="633"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="753"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="890"/>
            <end position="900"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="991"/>
            <end position="1008"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1035"/>
            <end position="1044"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1124"/>
            <end position="1151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="1179"/>
            <end position="1189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1193"/>
            <end position="1216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1232"/>
            <end position="1243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1251"/>
            <end position="1269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1481"/>
            <end position="1492"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1516"/>
            <end position="1533"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1602"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4009096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1602" mass="179302" checksum="9AF2D33ECE4139C3" modified="2020-12-02" version="1" fragment="single">ILAGRYKVIAKVGEGQSSVLVKAEDIFHPNERHVAIKILHASYCNLGPQEASCLLHLRKADTLKVANIAHILNTFTVGEHFCIVFEFLLPLPLYKYFQMFSFPSKAEKINLIRRIGFQVTQSLAVLSSLNIIHCDVKPENILFTDGDKKDVKLIDFGNAIYCIHDEMSLYFESFELQTVFYRAPEVMFGLLFGPQIDMWSLGCVLAEFYLGEPLFLAMSKDEILEKMQALLGPFPMSPFQTGKYFSTFKKFVGRVSPVPGFSKNVVNIMKKLGSTDYVFADFLAKLLTFDPNLRLSPNEALRHPFLAPECTVGFMLPPGYMTQESTYSPILLTPATYPHRPKIDEDIKKLRYSELDLLRVGTQASTMSKADNVMKVLPFNYQEESSNENKEEKCIVKNESNAEGRESRNTAGKNTAERFGNNETAGIFGVSIENKSHDGCPVDRRDNPYNESCSVLHTTKDTRAISVKEDQTYNDYGDSCSVVNLVKDTKLLQGSAIRGHKDKTFGVNTTNETCSSALFSKHDERDKPFDPNESCSISNAIKDPSSFTTPMKGGQRDDAFDETCMVLNTAKDKCLSTLFAKQHERDNPLNESCSVLNTIKNSLSLIVHKGRGENEKHGRKFVLRRSSKNRRRRDSERESRSTVSREDNKDFRKPYNAQSMSPAKLSDAQDKSPVKFINDHEVLLVNLSEPRDITRTANSSPVRRTSGGMPKGSADKKLNESSSIIPHHKGSSRKHSDKESNSAAIPPTRRTSRHDERTPENMRRTAANRVVEDSVTATRKAAYRRSSSETSYKEIKSATPPTRRTNKFKFNEEISEDMPKTAANRVVEDDVTATRKTAYKRSSSETSYKETDFATPPTRTTSKCDDRILEDIQKGAANRVIEDNVTATRKTAYKRSSSETSYKETDSATPSTRRTSKLDEEILENMPKSATDRKVDGINIIVSPKATHKSTSSETSDEETSPARWSIGRQNKRAKSSAIEMKSLGNCAEESGGKSRNETCVSKTKDRPNPSAVGRRKCKKSQQVLSSGVKDDAQTKPTLPTISHQTRDDVSTTCNNYQDLFSVTSSSKQVNADSYRNAKKPVSTKLSVLESFFDTLSDDETNLVSSSTNSGELRIKTKGISKRSVPTNSKVLTKNENSSSSEKLTPISSSIKQDKLSQKSCSNGNRHELEKLSNFQAFSEDTSSTSSEEVMLITSSNTQDELPPNSGNNWKRSKSPKSSIWKSLSEDKNSSSGLEVTLVTSSSKEGRLHAANSSNNGNRTNSAKSSNLQVFSEDKNSSFDEELTFVISTNTQDKLQTKSITNEKGAKSQKSKNVQAFSRDKNSSFGEEVMLVTFSNTQDRRLARRRNDDNRNMSANSWNFQSFSEGWTSSSGSESKIVTSSINQGNKSIGNVSSLEHKEKPRTPNFQKKESVFDTPMPCSLVRSTGELLPGGLSEVKKTICRAEMEQDNSLYEIHDILQARLVGDADMLNEEKQNTEKSGETYTRYNYTSPKQKTERVFLERNSQLVKGGQVLKNESQDSKRVSKEKGNRNLPEEMDTSYPRDILTQEAVKQPRKRKLEYSTVNSPGKSHTMFCLESLKDRQSPKIQKLPDDSDDDYDVLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUY5</accession>
    <name>A0A6S7HUY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A055820</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006648">
        <property type="protein sequence ID" value="CAB4010005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HUY5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="135"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="47"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="135"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="161"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="208"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="227"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="26647" checksum="128FC53357342722" modified="2020-12-02" version="1" fragment="single">MEETQRIQRSRKGHRAHLTKVLNKATTIMENDEAPNAMQIASFTATIEQLARKRTVLNELNEKLLAMVEDPDGLEQEIMEAEDIECEINEKSAQISAFVLSCNTVKNPVISQVNAPQVITSPLQVNAPQVITSPPQVSAPQVITPPQQVSAPQVITHPQHDNSPQTIPSQQVSESQPTTSSTLEVNPLQTPPLNQEQSVTVNESEGVSSMNTSTNTATALNHGAQIDDQSSQKLQPIGYNTTNVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3X9</accession>
    <name>A0A6S7I3X9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Follistatin-related 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007887">
        <property type="protein sequence ID" value="CAB4013435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3X9"/>
    <dbReference type="OrthoDB" id="6085115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051200">
        <property type="entry name" value="Host-pathogen_enzymatic-act"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011045">
        <property type="entry name" value="N2O_reductase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47197:SF3">
        <property type="entry name" value="DIHYDRO-HEME D1 DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47197">
        <property type="entry name" value="PROTEIN NIRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50974">
        <property type="entry name" value="Nitrous oxide reductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="589" mass="65069" checksum="2EC3987CA96BBCBB" modified="2020-12-02" version="1">MEMRVMALALFICAFLLEYSASVKTNTVFYVLGSDGIYVIDPVAKSVVTKINDMTSPGLCTESNIRGLRNPCSFSQASVVHDTVFVADASGSAVHVIDVKTRTKIETIPTDVYPYGLHFLPWRKEVWVHSWNISTFDVIETEGRNRTHTAIRAHVKPGFTHGIMLADKDMLEGKAAYVTHFSNPGIHKLNLETKSYTGFLNFTKYGCSGTYGIVYNSYNKRLYVECQSLFRSVSILELNAANDSLTKEYKFPGSPFVSPNGRYVVVLYRYKSRTNITTSRMNILAVSGSGVEHYPELRIPGGVSHAVFYPKSKNSDSYNVFITLDYSDKMAVVDLDVAKNGNISDVKYIENIDFLDSKPHGASRKLFISGKWIISPATKSKTVVIINAETQKVHGKVSGVNGGDLAVWVRDSTTNISDSQHCSDFVETGTRTKAWKFRQKIGNELCVMKPLKAYAVPSLIVVATFSTKFVVAEVVQPIPVSETLALHTGIAVEKMNVVFRTNVRGTVAKNAVQIQTVLPRSTVVNIDTTTITTSADAAVSERHATRVLTAEVRRNTVLRVKYAGKQGVPVRPTVIVEELVNAVYFPNAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I578</accession>
    <name>A0A6S7I578_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Solute carrier family 13 member 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A079734</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SLC13A/DASS transporter (TC 2.A.47) family. NADC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003630">
        <property type="protein sequence ID" value="CAB3999628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I578"/>
    <dbReference type="OrthoDB" id="6493944at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015141">
        <property type="term" value="F:succinate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd01115">
        <property type="entry name" value="SLC13_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031312">
        <property type="entry name" value="Na/sul_symport_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001898">
        <property type="entry name" value="SLC13A/DASS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10283">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 13 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10283:SF82">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 13 MEMBER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00939">
        <property type="entry name" value="Na_sulph_symp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01271">
        <property type="entry name" value="NA_SULFATE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3999628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="568" mass="63095" checksum="AE47D57113D48A07" modified="2020-12-02" version="1">MAVYWITEVCPLAVTSLLPLILFPFLGVVEAKQISPPYFSDTNILFMGGLLVAVAVEYWNLHKRIALFVLLKLGVQPRRLLFGFMSVTAFLSMWLSNTATTAMMFPIAQAVLQELREGTKNVDKNGVVNNGTAFEMDKEANHTKEEASSTEKMDSVDSIEKSDVGIVRIEVNKDEQSDLQHIRLCKGTFLSIAYAANIGGTGTLTGTGPNLILSGQADELYPASGGIGFANWFIYAFPEMLLLLCVAWVWIQWMYLETRLRDLINFIRRRPTKSKNSEAVDKATRVVQQQYDSLGPISFAEIAVLVHFVIMALLWLFRDPKFIKGWSILFTKGYVRDGTVGILVAFSLFNFPSRKPKIFSRIFSKGNEYDIEETGRSDGLSETLLNWPTVSQKFAWNIVFLLGAGFAMAKAAKESGLSLWLGQQLAKLDSVPTFVIVLITAAMLCAFTEVTSNTATATIFLPILGTLASSLRIHPWRLMVPATVACSFAFMLPVATPPNAIVFASGYLKVTDMAKTGLFMNIVSVAVLMLWLYTYGTWYFDLDTFPSWAEIAATNKTVVDCITRNNTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBP5</accession>
    <name>A0A6S7IBP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004048">
        <property type="protein sequence ID" value="CAB4001288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBP5"/>
    <dbReference type="OrthoDB" id="5970710at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1720.10">
        <property type="entry name" value="endopeptidase domain like (from Nostoc punctiforme)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="18328" checksum="869163E598595408" modified="2020-12-02" version="1">MKIRIFHTLLLALLASATVFGCPRRTGGGPSIATIRNKIASKAESYVGSTRWCYACSSGHGANTNKCNYFVYDVGREAGAKMPVRTFSLSGGPVGAGVGGWGTASSLNYWTRVSSPQRGDIVSAHQNNVYHVGIYVAYRTTVSANNVDVGRKNWPYSGGYLGIVYWRYTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBS7</accession>
    <name>A0A6S7IBS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049307</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007922">
        <property type="protein sequence ID" value="CAB4013550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBS7"/>
    <dbReference type="OrthoDB" id="5984311at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="204"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="204"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="27845" checksum="BC88F9BA92DBAAA8" modified="2020-12-02" version="1">MAEGQAAEQNNMRVIVMSKTLKIEPFKIPDNHLKVGRAWEEWIEDFEDEITYFEIREIRDKISALKIYGGQELKKLARNLPDPPPIEVDNEYEKLKRKLNNHFLPKKNKRYARYTFSKQRMESYESIVAYAARMREKARDCEYGDQADDRILEHLIQTIKDNDLIKRCIQKRWKLEQFIEEASQREDIGQQVKDMKDDHKVARIGQRAEKHRRDYKFTGEKQAKAHGSYTCYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJL9</accession>
    <name>A0A6S7IJL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A034172</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004535">
        <property type="protein sequence ID" value="CAB4003088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJL9"/>
    <dbReference type="OrthoDB" id="5990438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="27"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="27"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4003088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="792" mass="89237" checksum="AD15004F813D6A19" modified="2020-12-02" version="1">MDRVNLAVSAESERQNKMGVLVKKSLHVNQINNSPDSGQEPQNPKMRKKIGNEEKECKSNKLVAALEAVQSDLASLKEAFNRSQISGKDASKQDPDQRNQYKRKSTLCKKCQESVCQEKHWGEHKFLCKELSHLNEQNINSEVKKGTYVCHLSPKEGATVARLIGKKCTVKCFLNGMESTALWDTGAQISIVSHDWVLKNLPKAELRTVESLLGASELDLKAANGTALPYDGWIDINFKLMGTNHDYGFKVPFLVAKNVLDEPIIGYNVIEGVTQNSTSDTEQPLYLDALSSSMVGVERDRAEALVEFLKAERPTELSVLKTTKMDIVIPPAQSVRVSCHVNVGPIEDRIPVLFEPNPEWPWSDGREVPETLTAISRGSRVNIQVNNPTRHPIVLRKRTVLRRIQLVRSITPLEVKQVQQTKVKESGYFGEKTKVDIASAVSTKERQDCPETTNEGAFNYVPNVDLEGLSNEQKLIEKMLQEESESFSKAGEIGNAEGLQMNINLTDSIPVQKTYTAVPRPLYPEVKQYVEDLLNRGWVRRSGSAYSPPVVCVRKKDGTLRLCVDYRQLNQKTVPDRHPLPRVQATLESLGGNNWFSMLDQGKAYHQGYISPESRHKTAFITPWGLFEWVRIPFGLMNAPGEFQRFMEGCLHDLRDEICIPYLDDVIVFSKSFEEHVDHVRQVLQRLRANGIKLKPEKCKLFQREVNYLGQIVSSEGYRPDPSKVNAVTALKDSVPTNVGENCLVLLGIIEDTFLTLPGLLDLCLTCYKAYKPIRPSPLIEEIKPVVWQKQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ITE5</accession>
    <name>A0A6S7ITE5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">NACHT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A004925</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011281">
        <property type="protein sequence ID" value="CAB4021127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ITE5"/>
    <dbReference type="OrthoDB" id="5989012at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058056">
        <property type="entry name" value="WH_TANC1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039:SF17">
        <property type="entry name" value="FUNGAL STAND N-TERMINAL GOODBYE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25521">
        <property type="entry name" value="WHD_TANC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="2">
        <location>
            <begin position="38"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="TANC1/2-like winged helix" evidence="3">
        <location>
            <begin position="320"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4021127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="517" mass="59726" checksum="39170B25C98B9795" modified="2020-12-02" version="1">MIKSPISHFQFQQFDFSSYLAYKREGFVGREWFFMELDNIFETDRETAGVLITGEPGSGKSALMSQLICSPYSSLPIHQNIIGYHLCEYSEKGKRDGARFVRNLVDQIAARLSGYSEHVIKSEQMRMKLQDTLCQQDPTECFFTSILGPLRELKPPPDGLRYIVIDVLDECFESDKTSEIFQILSSKILHFPKWLKVILTSRNLTLVTEELPYIVRRKPLYANDDRNVKDISLYVSRFISQNSFFVDRLKTAMNFKSRTYDMKIFLDKVITRAEGNFLFVKMTLQYMNDTDGVVDTKSLPTSLFDLYSIFFKRQFGKGGFGPLRSLFEVLLSVCSPLQLNDVEEILRSEYEAEDVSQLIDQASCFLRFGRDGTVRIYHQSFAEWLVNQTGLIHINETRAHRSMANFLLHRIRERDMNVTFGEVIELFMHILAGNTLAIHGNAIDLFNISEMRESRTNQSILHHLAIKPKQFQPVLEFFLQKFRIVDMLDANKKTPAFYATSEGLAEICEASLTEEQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVB5</accession>
    <name>A0A6S7IVB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">G- coupled receptor GRL101-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A071564</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011188">
        <property type="protein sequence ID" value="CAB4020929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVB5"/>
    <dbReference type="OrthoDB" id="5976858at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000005">
        <property type="entry name" value="Procollagen C-endopeptidase enhancer 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251">
        <property type="entry name" value="OVOCHYMASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00629">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50060">
        <property type="entry name" value="MAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4020929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="34482" checksum="8825620B84FEEEB8" modified="2020-12-02" version="1">MCMTFTYRLLGKGPELDISVEPKNMNKEQLWLVKDSQNDTIWKTGQVSLGLVTEFRVHIKATQRYKSEVNIDNIFFMEGYCDPVPANAQEWRTSISDSSSGYITSPYYPTLYLNNMKRNWRIEVPDGQRLKLDWSYLNLEHHKQCKSDSVIIKDSRRSRTSTSFCGYELPPTYLAPGNKVIVGFQSDETNVGTGFKLHYQAIPADFFDDSCENKEVSDCHPMVQCSYIRSNKSKVFVEALDLMIIPEYFPALTTAIDFHDNFLIKLGAYCFENLTQLEYLGEDSTSKYKLTLSQNIRHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IX36</accession>
    <name>A0A6S7IX36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Patatin-like phospholipase domain-containing 4 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011899">
        <property type="protein sequence ID" value="CAB4022283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IX36"/>
    <dbReference type="OrthoDB" id="197155at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005811">
        <property type="term" value="C:lipid droplet"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004806">
        <property type="term" value="F:triacylglycerol lipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055088">
        <property type="term" value="P:lipid homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019433">
        <property type="term" value="P:triglyceride catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1090.10">
        <property type="entry name" value="Cytosolic phospholipase A2 catalytic domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033562">
        <property type="entry name" value="PLPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12406">
        <property type="entry name" value="CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12406:SF7">
        <property type="entry name" value="PATATIN-LIKE PHOSPHOLIPASE DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="FabD/lysophospholipase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="GXGXXG" evidence="1">
        <location>
            <begin position="7"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="1">
        <location>
            <begin position="38"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="1">
        <location>
            <begin position="159"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="27909" checksum="F2903D79F841D646" modified="2020-12-02" version="1">MNLSFAGCGFHGIYHFGVISCLQRHGKNIMKDIRGYGGASAGSLVAALLATSTPLEHDLQFSTELATKVRRYFLGALNPSFNLMQHLDDGLQRFLPQDAHKRANGKLYVSVSRFPQCENSIVSQFASRDDLIQVLLASCYIPIYGGTKVPIYKGEKLFDGGFSDNLPVFETGKTIRVSPFCGDFDICPEDKHSYKLFTAELVKNMNVVVNFQNMERGFQALFPPSKNDLQKIYKHGYNDALKFLGIFVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IX41</accession>
    <name>A0A6S7IX41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012773">
        <property type="protein sequence ID" value="CAB4023976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IX41"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="62" mass="7219" checksum="85053C379E3B7DF1" modified="2020-12-02" version="1" fragment="single">GNKPVVIVNGRKGKKQARYNLKDRRNSFDLDFDLFSSDGDKSNGIPNYAESFEMDERRDIYM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J0E6</accession>
    <name>A0A6S7J0E6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Regulator of cytokinesis 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080790</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012509">
        <property type="protein sequence ID" value="CAB4023453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J0E6"/>
    <dbReference type="OrthoDB" id="642895at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990023">
        <property type="term" value="C:mitotic spindle midzone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051256">
        <property type="term" value="P:mitotic spindle midzone assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007145">
        <property type="entry name" value="MAP65_Ase1_PRC1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19321:SF41">
        <property type="entry name" value="FASCETTO-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19321">
        <property type="entry name" value="PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03999">
        <property type="entry name" value="MAP65_ASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="251"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="303"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="215"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="271"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="314"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="343"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="46467" checksum="DEAFC6FFC085954B" modified="2020-12-02" version="1">MQWHKIATLLEKQQKENFGKAARLREQLKRLWAKLDIEDSEQERCSAACSGFRPSAVLKLKAEVEKLEALKVLHIKKFIEGSRRELDEIWDKCYFGESQRREFTPAFDENFNEDALTLHEHQVEVMRNYYEENSAIFKLVEKRENMWKKFLEFESKENDPNRLFLNRGGALLKEMKTRNTVQKGLPKVVEELKNTIASWEHDNENLFLVNGERYLDVMERQWLNYEEEKKRAIAERQKAKKETLNKEMVYGCTPSKKTPAKTPQGKRLRSASKMNSTASSTATTPSRLFQSSVVCRSPLTPRKNLMSALNKPPKVAKGKVVKNQRRRSSRLSKKLAKKVSSKPLNATSSGSSRNSTMIVARSGRAVAKESLSSCTSYTDFASGLREQEPTEVLNSTRSQMVTFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J482</accession>
    <name>A0A6S7J482_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">G2 M phase-specific E3 ubiquitin- ligase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A054752</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013442">
        <property type="protein sequence ID" value="CAB4025147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J482"/>
    <dbReference type="OrthoDB" id="5984536at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="27"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4025147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="641" mass="70849" checksum="9E51AFE1D42537AD" modified="2020-12-02" version="1">MAGNASSDDLDERIRRQLGGVTGGLPSRSSQQQNSSTSAVSVRAGRTDRNVPSHPLRFPKRKQNAPAKSSNKKNKQTIPKTVYLLDNISGGDDEDAEVDDYEYAIKDEMILLKGEFDLECDGDEASIQSELKKVFSKKFPLICDDNFDFVKRDRNTVCTPVVKEGHKWDYAHVKHLCGAGKLYVRLNTNKDIIMEEDVGIDFEQSPLIDLSHPSTSSGEQSIDTKIEQSPLIDLSQPSTSSGEQSIDTKIASLAALFSNAKQSDITHAVMIYDSLDSAAGYLSEISNLEPEKLTNEDSGVSNANLTVAEILKKLKNKMNSYCTAEKIKRRPAVDAGGVLRQVYEDVFLRILKGDGGFQLFQGPLDRVIPTYRSSTILSGTFELFGKIIAHSLVQDGPGFPYFCPTLYWYIATGDLQQGVARVSCIDILDPVLSEYVRKIRDATPSTINSIMREDDFLQIMKNAGETRLLQENNKLEIVQSLLVHEVILKHKTALDQMRKGLSILGLLAEIEKSPEKFQSLFVHEDDDINAEFLISLLRLPDASTCTPSVRNVVQMLMSFINNANKEVLCQFLCFVTGCKSNTAALTPGCVDVSVADVSDIFASTCLLELRLPSSFSNPEQFDACINAVIDTKTFISTFTTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7W4</accession>
    <name>A0A6S7J7W4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC106613174</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057652</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013419">
        <property type="protein sequence ID" value="CAB4025110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7W4"/>
    <dbReference type="OrthoDB" id="5971001at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF19">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24489" checksum="5D3B32ACFE111BF0" modified="2020-12-02" version="1">MATYGRIDEYDESEEWTQYVERMDHYFEANDIEDKDKKRSIFLSVIGAKTYKLLRGLIRPEVPNKLSNEELSEAIKNHYVPKPSVIVQRYEFNTRVRRNDESISTFMAELRALSEHCEFGSALDEMLRDRLVCGVNEDRIQRRLLAEPTLDLKRALEIAHGMENAAKDVRDLKGEMPNTATNIKNVIVVVVNMTIQSAVLKLKSAINAVKLDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8D0</accession>
    <name>A0A6S7J8D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025531</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014137">
        <property type="protein sequence ID" value="CAB4026321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8D0"/>
    <dbReference type="OrthoDB" id="8046937at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24885" checksum="C4CE4BC7A7DCF171" modified="2020-12-02" version="1" fragment="single">KFDGVSLNKVLLPGPDLMNSLLGILIHFRRERVGVMCALEQMFYSFYVNPEHGDYLRFLWYKDNDPQKQVIEYHMNVHLFRNRPSPAVATFGLRKTAVEGHEKYGEEIKDFVHHNFYVDDGLASLPTAEEAIKLVTSAQNTLALSNLRLHKVVSNSVDVMETLPTEDRAKDLCDLDIRRDTLLPSGLLEFIGTLRTMRLHSKFPHPKSLSLAVESFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9S7</accession>
    <name>A0A6S7J9S7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ceramidase</fullName>
            <ecNumber evidence="1">3.5.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080472</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.23" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020015834">
        <property type="protein sequence ID" value="CAB4028935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9S7"/>
    <dbReference type="OrthoDB" id="5273684at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017040">
        <property type="term" value="F:N-acylsphingosine amidohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029130">
        <property type="entry name" value="Acid_ceramidase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28583">
        <property type="entry name" value="ACID AMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28583:SF1">
        <property type="entry name" value="ACID CERAMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15508">
        <property type="entry name" value="NAAA-beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acid ceramidase N-terminal" evidence="2">
        <location>
            <begin position="38"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF15508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="13508" checksum="12E4D1216DFDB81E" modified="2020-12-02" version="1" fragment="single">MAHARFVFLFFAFLSVYSITAQKTVCNHESYPPPAKDKVDTVVINLDLEPEERWQDITVKKKAEILVLVKEIKNFTSFILDGKLFEYIDKYMPMLVHSLPDPYGREIKGISSATGIPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JH91</accession>
    <name>A0A6S7JH91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110244569 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013550</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015437">
        <property type="protein sequence ID" value="CAB4028370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JH91"/>
    <dbReference type="OrthoDB" id="5771378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052729">
        <property type="entry name" value="Acyl/Acetyltrans_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041496">
        <property type="entry name" value="YitH/HolE_GNAT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47237">
        <property type="entry name" value="SLL0310 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47237:SF1">
        <property type="entry name" value="SLL0310 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18014">
        <property type="entry name" value="Acetyltransf_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="296" mass="33274" checksum="194F908ED2074FE3" modified="2020-12-02" version="1" fragment="single">MFRTRLITTTLLKHYYQLSLAQEGWRPCFGDIDCYLQLDPTGMYVGELNNKPIATYSVIKYADGYRHLGSYVVKEQYQKLGYGVNLAEACWAYSAPIKNMSGYATPEMARKYEKSDTMVSRWSVGIYDLDISKALDTLQAHNSDSCEVRHINEINMQDVCDYDADVFGYNRIKFLEKWLNTPGAHVRVAVDKEGSIAGYVAVRLAFFQDEGYKLGPLFCENTEVGIVLLKGVFEDIGECGLSSSNSVILDSPIGKNPDAKELMQLVDGKLLGHIEFMTSNGLPKGRFNQWFAITSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHM3</accession>
    <name>A0A6S7JHM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Dual oxidase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A071278</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017956">
        <property type="protein sequence ID" value="CAB4031876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHM3"/>
    <dbReference type="OrthoDB" id="6019201at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043020">
        <property type="term" value="C:NADPH oxidase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016175">
        <property type="term" value="F:superoxide-generating NAD(P)H oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009653">
        <property type="term" value="P:anatomical structure morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042554">
        <property type="term" value="P:superoxide anion generation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06186">
        <property type="entry name" value="NOX_Duox_like_FAD_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000059">
        <property type="entry name" value="dual oxidase isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="entry name" value="Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013112">
        <property type="entry name" value="FAD-bd_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013130">
        <property type="entry name" value="Fe3_Rdtase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050369">
        <property type="entry name" value="RBOH/FRE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11972:SF208">
        <property type="entry name" value="DUAL OXIDASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11972">
        <property type="entry name" value="NADPH OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00036">
        <property type="entry name" value="EF-hand_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08022">
        <property type="entry name" value="FAD_binding_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01794">
        <property type="entry name" value="Ferric_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01169">
        <property type="entry name" value="NADPH_oxidase_subgroup_(NOX)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="Ferredoxin reductase-like, C-terminal NADP-linked domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="Riboflavin synthase domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0521">NADP</keyword>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4031876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="605" mass="68483" checksum="F623976B700F06A8" modified="2020-12-02" version="1">MQATSPFVEQMFKLADKDCNGYISFREFLDIMFIFAKGTPEDKLKLYFDMYDVTGEGKLDREAFKKMMRSFMDVVSASVDPTNLDELVDSMFKTEDGEEKEFLYFEDFGSIMMDLDKKDGLLSDVNNVFKGATDTITSCAKSPKRKCAKNAGRAKNAMDTESLTRKRKYGTVVKKDSRLGATSPPIEAASPGRTDFTLAQKVNIDYSPYLIRQWITLTRYIENHRQHIFILTFYTLLVIGAFIEKAYAYSVLKEFSGLRRVAGYGVSVSRGAAAAMTLTFSTLLLTMSRNTLTFLRETQAMNWIPFDSAIAFHKYVAFLALFFTVVHTIGHAMNFYHFSTQSATALTCLFRNDFHRSHILPSFTHYCWGTVTGLSGVLLCVVIAVLYVFATQYSRRVVFKFFWWTHQLYFALYALTIIHGSGHLLQPPGFHVFLIGPAVLFTIDKLISMARKKVEIPVVKAELLPSDVTNLQFKRPVNFNYKSGQWVRIACLDLGGSEYHPFTLTSAPHEENLSLHIRAVGPWTINLRSTYNKDNLQDRPFPKLYLDGPFGEGHQDWYRYEVSVLVGGGIGVTPFASILKDIAHKGTLKSTFACKQVGVTSMPHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLU3</accession>
    <name>A0A6S7JLU3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016549">
        <property type="protein sequence ID" value="CAB4030000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLU3"/>
    <dbReference type="OrthoDB" id="5988934at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13728" checksum="109E6EAA85100F95" modified="2020-12-02" version="1" fragment="single">MTAADSPVSVEFITQMDSYVQSSEIFKTVLVEALNSALQETLTPLYAEIQSLKSEVSSLRSELYEVKAKANDNEQYSRRNNIRIFELGEENNENCYDDVLRLCDELNLDVKRNELDRVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JN35</accession>
    <name>A0A6S7JN35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029622</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018301">
        <property type="protein sequence ID" value="CAB4032311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JN35"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="23435" checksum="4E4F86358A14FBBF" modified="2020-12-02" version="1" fragment="single">KVSNTYNLKDHKDNFSSNPTCRLINPTKSEIGKVSKCILDRINKDIINKTGVKQWKSTIDTLNWFNSINGKKHTQIFQPKKKKQYGMQSNLSYTTATSHGPKRILQTHSMLRWARLMAQKQIKIKKQICKVFKDNDLNKGTDKPKNVATNMLENYADNLNLSSRKRSCVYQYGLVLITTCEYINNINDCSNSTSNMYMTNEHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSY9</accession>
    <name>A0A6S7JSY9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">CHHC U11-48K-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A029003</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010403">
        <property type="protein sequence ID" value="CAB4019320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020010403">
        <property type="protein sequence ID" value="CAB4019321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSY9"/>
    <dbReference type="OrthoDB" id="10069248at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022776">
        <property type="entry name" value="TRM13/UPF0224_CHHC_Znf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051591">
        <property type="entry name" value="UPF0224_FAM112_RNA_Proc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21402:SF5">
        <property type="entry name" value="GAMETOCYTE SPECIFIC FACTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21402">
        <property type="entry name" value="GAMETOCYTE SPECIFIC FACTOR 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05253">
        <property type="entry name" value="zf-U11-48K"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51800">
        <property type="entry name" value="ZF_CHHC_U11_48K"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CHHC U11-48K-type" evidence="4">
        <location>
            <begin position="17"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="CHHC U11-48K-type" evidence="4">
        <location>
            <begin position="49"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4019321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19950" checksum="81D1E5B901114A56" modified="2020-12-02" version="1">MAWTASTEWERWDPEQYVVCPFDSSHRITAARFQRHLVKCRKNFPNKDFVSCPFNATHQVLRPHLRNHICQCPDKNVVEATMNECYQDPESLDRLRGDTSVPSYQTPGLYDVGDEDWDTEMAENEQMFCTVAPVITHRHSNEPTRFEQQSLMGLKHQVLKREIKQKALQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K099</accession>
    <name>A0A6S7K099_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110248158</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073416</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011708">
        <property type="protein sequence ID" value="CAB4021922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K099"/>
    <dbReference type="OrthoDB" id="5987440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="467" mass="53342" checksum="2ED346005AFBAEAB" modified="2020-12-02" version="1">MTIPRLELTAAELSVCVSNMLVKELVKELDVSPDDRFYWTDSTTLLKYFTNDKARYKTFVANRVQTIRDTTAPHEWHYVDSALNPADDASRGLKMSRFLENKRWINGPSFLWKATDEWPKRPADVSINTLDDPEVAAISANTIISGQHNEILEYFSRFSQWYRLKKAIAWLLRMKPRQDRNRRNLGDSSTQDKTLKPIMVEELEKAEVTIVKIVQAESFPDEISVLKRVEDSSKVNNRSLTKQKTTKLRKSSSLYRLDPFLGSDGLLCVGGRLRRCDEITTEMKHPVILPKNGHVTELIIGHNHENAAHGRRGITLNHLRGRYWIINANSRVRNYISRCVDCRKFRARTAKEKMADLPKDRLTSAAPYTYCGVDLLGPCLIKDGRKELKRYGVLFICLNSRAIHLESANSLETDSFLNTLRRFIARRGPVGEIRSDRGTNLIGAAKELKDALKVMDDAKINLCAHGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7S9</accession>
    <name>A0A6S7K7S9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025653">
        <property type="protein sequence ID" value="CAB4039618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7S9"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="13018" checksum="BFB22CE7EB4E059E" modified="2020-12-02" version="1" fragment="single">MERKKCKSSYYDCKIKNLKHVKPRNWWSAVKKISGMDTITKSDLRSNLQIDDLDNLSDIEVANKINDKFLEPLQEFQPLQITVPNNDSISNVLTVSELDFWNCLNSLNPWTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBB4</accession>
    <name>A0A6S7KBB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066336</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029337">
        <property type="protein sequence ID" value="CAB4042027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBB4"/>
    <dbReference type="OrthoDB" id="5990523at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="147"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="36359" checksum="A53AA41DC23D68F4" modified="2020-12-02" version="1" fragment="single">ELKGEKRATYFRREKKNRNAEYLDEKVTVNVGFMKYDGVGMKGQRGKSLPLTITKSSDRKELMDAAFGKLKAHNMAEIKSIGDYELLYPDATVVEKLRESDEPFVLHKYKKEYGKPYSRITFYLSLKTDLINYKLTALKKAIYSSPSCESQGESDSEGSQSKKLKTEPKRRKPSMVKTQKPVIHVVDSSPVSTSSNTELEQTEPKQTEQIETDAAIALALQMENVDNTYAALFTVDDQLEELSTNEETFSDDAVEMSTSGKDDAQTPTIEAVVTELAQQVDFSNITKFNVVRTHLFDKAKRALNRKKFDPCHKVSVKFMDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIQ0</accession>
    <name>A0A6S7KIQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Stabilin-2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A045201</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029241">
        <property type="protein sequence ID" value="CAB4041970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIQ0"/>
    <dbReference type="OrthoDB" id="286301at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.300.10">
        <property type="entry name" value="Tie2 ligand-binding domain superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056806">
        <property type="entry name" value="EGF_STAB1-2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24038:SF11">
        <property type="entry name" value="INTEGRIN BETA-LIKE PROTEIN E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24038">
        <property type="entry name" value="STABILIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24887">
        <property type="entry name" value="EGF_STAB1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="5">
        <location>
            <begin position="26"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4041970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="85" mass="8854" checksum="5039CF90D96463AC" modified="2020-12-02" version="1" fragment="single">MESGQLACFGNGQCYDSVAGNGTCQCNAGFEGFACELCTNKSKFDVKCGKDCTCKHGVCDSGVLGVGTCTPFSCKRGYHGKNCSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KVN3</accession>
    <name>A0A6S7KVN3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase</fullName>
            <ecNumber evidence="10">2.7.4.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A016307</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Bifunctional inositol kinase that acts in concert with the IP6K kinases to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, may regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, and exocytosis. Phosphorylates inositol hexakisphosphate (InsP6).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>1D-myo-inositol hexakisphosphate + ATP = 1-diphospho-1D-myo-inositol 2,3,4,5,6-pentakisphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:37459"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58130"/>
            <dbReference type="ChEBI" id="CHEBI:74946"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.24"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:37460"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>5-diphospho-1D-myo-inositol 1,2,3,4,6-pentakisphosphate + ATP + H(+) = 1,5-bis(diphospho)-1D-myo-inositol 2,3,4,6-tetrakisphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:10276"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58628"/>
            <dbReference type="ChEBI" id="CHEBI:77983"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.24"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:10277"/>
        </physiologicalReaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Cytoplasm</location>
            <location evidence="1 10">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the histidine acid phosphatase family. VIP1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.24" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020012993">
        <property type="protein sequence ID" value="CAB4024369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KVN3"/>
    <dbReference type="OrthoDB" id="18042at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033857">
        <property type="term" value="F:5-diphosphoinositol pentakisphosphate 1-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000828">
        <property type="term" value="F:inositol hexakisphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006020">
        <property type="term" value="P:inositol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032958">
        <property type="term" value="P:inositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07061">
        <property type="entry name" value="HP_HAP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.20:FF:000003">
        <property type="entry name" value="Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033379">
        <property type="entry name" value="Acid_Pase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013651">
        <property type="entry name" value="ATP-grasp_RimK-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000560">
        <property type="entry name" value="His_Pase_clade-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037446">
        <property type="entry name" value="His_Pase_VIP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12750">
        <property type="entry name" value="DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12750:SF9">
        <property type="entry name" value="INOSITOL HEXAKISPHOSPHATE AND DIPHOSPHOINOSITOL-PENTAKISPHOSPHATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00328">
        <property type="entry name" value="His_Phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08443">
        <property type="entry name" value="RimK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00616">
        <property type="entry name" value="HIS_ACID_PHOSPHAT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 10 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ATP-grasp fold RimK-type" evidence="12">
        <location>
            <begin position="192"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="439"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="439"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="674"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00034629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU365032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4024369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="674" mass="76929" checksum="0FBE7BFF9275932C" modified="2020-12-02" version="1" fragment="single">LRAVGSGIIQIITKFANRLQDRLQDLSTYVQGTKWNSIKLCLHFKCVVASLKSFPLNKAIQYSELRKPFVLNDLESQYLLHDRRQVYEKLQDIGVPVPRYAVLRRDENGVCDDPEFHESEDTIRVHGKVFNKPFVEKPLSAEDHNVYIYFPSQAGGGCQQLFRKIGSLSSRYCDQSQVRKTGSYIYENFMPTEGSDVKVYTVGPEYVHAEARKSPSLDGKVERDYQGKEIRYPVILSAIEKEIANKVCNAFKQTVCGFDLLRGNGMSYVCDVNGFSFVKTSKKYYEDCSQVLGHMILQRIAPQLPIPDLAIEDAPFVDTPEELMLELRCVMAVIRHGDRTPKQKMKMEVRNQMFFDLFHKYGGTNEVKLKLKKPKQLQEVLDIVRVLVDRAKEPAINEDKQFESQHKLEQLKSVLEMYGHFSGINRKIQFKYLGSSRLKPEKSPCEDRGRHGYSSDEDLMDEKKDGRRNLFGTGSPPSVHPIPDSPPCKVTKRFLTKCHSEVRRREQAVEMGEACRCMYPGGRGEYASLPGCGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVHLVRCDKHATKMLDTVGDPQNLTYKVKCRLHEFFNLDKDLCEEDYQTIIPTASVSQITALKFIKNPYKMCGRLYSLVKSLTAQLREILSDPKVDSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LB93</accession>
    <name>A0A6S7LB93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Fat-like cadherin-related tumor suppressor homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A085811</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020536">
        <property type="protein sequence ID" value="CAB4034922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LB93"/>
    <dbReference type="OrthoDB" id="5986857at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032991">
        <property type="term" value="C:protein-containing complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045197">
        <property type="term" value="P:establishment or maintenance of epithelial cell apical/basal polarity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007157">
        <property type="term" value="P:heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000012">
        <property type="entry name" value="Delta-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000434">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051022">
        <property type="entry name" value="Notch_Cell-Fate_Det"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24049">
        <property type="entry name" value="CRUMBS FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24049:SF22">
        <property type="entry name" value="DROSOPHILA CRUMBS HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00010">
        <property type="entry name" value="EGFBLOOD"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="103"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="141"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4034922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="17538" checksum="38BA12597B6266A0" modified="2020-12-02" version="1" fragment="single">CAKLAKSFGYRYIGIQSYGECWSGDPTADLFKYRAINPHKCWGFKPHYSKCDDEAETECTGTPEYNYIYELYLTGSKESPCSSLPCYNGGNCTEVGDSFVCKCACGYKGQQCEMKVSPCASAPCMNNGNCTNVGNSFLCKCPCGFKGTRCEKDGLYNFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LJD5</accession>
    <name>A0A6S7LJD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011287</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023589">
        <property type="protein sequence ID" value="CAB4037903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LJD5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="91" mass="10322" checksum="6BBEC72CF5B0EC5C" modified="2020-12-02" version="1">MNFQKRIALFVVVTLVASTCANYLTSCDSTCLSEFYKCFGKCKVAKTCTLCVDYKITCLNNCQATRKRREVYDAPAKITDIQGLKKYLNLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LR66</accession>
    <name>A0A6S7LR66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A052282</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028579">
        <property type="protein sequence ID" value="CAB4041602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LR66"/>
    <dbReference type="OrthoDB" id="5988199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="141"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="148"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4041602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="40835" checksum="452A5BFFABC61FE5" modified="2020-12-02" version="1">MQRFLIYHWSRWHNTFDFEKSEVDKIKPLIQKFEDYCIPKQNTTMQRYKFNKRVQSETESVDQYVTELRLLAKNCRFGELEEELIRDRINCGIKADRLQARMLREDNLTLDKSISICKADEESRKQLKDLTKDDSFKVSSVKKSSRKGNIESRPAKFGREKQKISSSGSSEVIKCSKCGRDHPSKQCPAYGKVCHACRKLNHFAKCCRSRKVHGIDQMHTDPDILFVGTVDKKPEQSTKTELTKDECFITLEVNETPIKFKVDTGSQANIIPMSMYRELKGPKEPIQASRTSLTSYTGDKLNLVGKCTLKCMNRRPNFFVSETDQYPMLGIQASQELDIIKVVMSTNKELRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUZ6</accession>
    <name>A0A6S7LUZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081230</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036874">
        <property type="protein sequence ID" value="CAB4044923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUZ6"/>
    <dbReference type="OrthoDB" id="5957838at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="27034" checksum="7CCEB7B8DF8D897F" modified="2020-12-02" version="1">MDEIDKSKPRRSYLVTYSQADLQKFPTRESFGEAVAAAFTSKRSKVIPLHWACCLEKHENGGYHYHLALKLSGTKRWLEAKKSIEAEHGIAVNFSDHDGYYTAYRYISKSDDMVLHSTGHPNLDEIGSPRTKRCQQTYRKRRCEKKSNVADTEAATTSKRRKKLSNLEVVEFIVEHEIKSETELLDVANEQSEEGKKDLTDFVLSRNSKGLHDLIEQTWKMKTASATLQRKKLHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH85</accession>
    <name>A0A7D9DH85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062146</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000748">
        <property type="protein sequence ID" value="CAB3984509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH85"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="10963" checksum="12F484AB2BF22689" modified="2020-12-02" version="1">MKCGVPQGSILGPLLSLLYINDLPECLKNTRPRLFADDTNLTASSHSITDIEIAVNSDLENLRNWLMANKLSLNVAKTEFMFIGSPQMIRNSSNSQPNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DHX9</accession>
    <name>A0A7D9DHX9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Acyl-coenzyme A oxidase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A011159</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Peroxisome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the acyl-CoA oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000843">
        <property type="protein sequence ID" value="CAB3985215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DHX9"/>
    <dbReference type="OrthoDB" id="538336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003997">
        <property type="term" value="F:acyl-CoA oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005504">
        <property type="term" value="F:fatty acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033540">
        <property type="term" value="P:fatty acid beta-oxidation using acyl-CoA oxidase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055088">
        <property type="term" value="P:lipid homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.10:FF:000007">
        <property type="entry name" value="Acyl-coenzyme A oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.10:FF:000010">
        <property type="entry name" value="Acyl-coenzyme A oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.110.10:FF:000005">
        <property type="entry name" value="Acyl-coenzyme A oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055060">
        <property type="entry name" value="ACOX_C_alpha1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012258">
        <property type="entry name" value="Acyl-CoA_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002655">
        <property type="entry name" value="Acyl-CoA_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909:SF382">
        <property type="entry name" value="ACYL-COENZYME A OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909">
        <property type="entry name" value="ELECTRON TRANSPORT OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01756">
        <property type="entry name" value="ACOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22924">
        <property type="entry name" value="ACOX_C_alpha1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000168">
        <property type="entry name" value="Acyl-CoA_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="Acyl-CoA dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="Acyl-CoA dehydrogenase NM domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0274">FAD</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="4 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-0576">Peroxisome</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA oxidase/dehydrogenase middle" evidence="13">
        <location>
            <begin position="191"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA oxidase C-alpha1" evidence="14">
        <location>
            <begin position="338"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA oxidase C-terminal" evidence="12">
        <location>
            <begin position="524"/>
            <end position="650"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="33"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="45"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF22924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3985215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="664" mass="74295" checksum="57B145997B9279D9" modified="2020-12-02" version="1">MQRLLRIPRLLSHGHQATRTYLRAASLQVTQTLPTQHTTPHSPRYISTTPTHANPNPKELHDAWGKPSFDIKEMKHVLDHDNHEMRDSCREFLSGDLMKPKYNISIDEERDLALKRLQAMCDNDYISVLDFRNNPWRIFAAHELSAVVDPAMTTKMTVQFNLFGGTVLKLGTERHHEMLLPGIDTLKDVGCFGLTELGYGNNAVEMETTATYDKQTQEFIVNTPTTLAQKYWITNGALHAQHCVVFAQLKIDDQNHGIHGVLVRIRDDDLKIMPGVRVEDMGHKMGLNGVDNAKLFFDNVRVPRENLLNRYSDVSEDGSFQSSIKSDRARFLTVADQLLSGRICIASMCQGAAKASLTIATRYASTRLTVGPRGKSDTPILNYQLQQRALLPLFARTYGINFGLDYVKDRWANQKADGSEHPEIVTMCCVIKPLAAWNIGEVVSIARERCGGQGFLSCNRFGTFLGNAHAAMTAEGDNSVLMQKVAKERLAVFKPQTLGQSRDVDLKDVDSLHFLLQKREDLLFMQLGKKLQAAGKEGLFETWMYQASDNIQAAARAFGDRLISERFLAVTENASEENKKILNLLHRLYIMDVLEKDLGWSLLAQVLPAAEAAKVNAEAADLCAQLAPDAMALCDAFAIPDEMLSAPIARDWVEYNVHDNLGEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIS5</accession>
    <name>A0A7D9DIS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004306</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000923">
        <property type="protein sequence ID" value="CAB3985795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIS5"/>
    <dbReference type="OrthoDB" id="10452321at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="43277" checksum="C495CAC733DD9C83" modified="2020-12-02" version="1">MVVKLPAVLWTFVTVMSLQCSDCLSSVRANRRIRSSSKIITEIIELEKGTEVTYLNCSTNINGTKLKVEWKKDGVIIPELYSSDVCPIYDANCDGKYTCFASGSNSTVIILKEFVVKILDNSPCGNAGEELVQRSEICIVPTTQDYPCCHYHIPPPGMLRLSRKISSDVKSKCKLDTLKNPTPWQIDVAWNLTHNATWIWGWQVSLSGLDNSVGVKRCVQINSKSKLLNWTFDGLPFGSKYEIKVQALPSDLTNYIHETIVLPRKRDICKKIGRKCHWEICFPVEDVQQEEMSSVLTWRLSKYHKTLHDFEIYYSSSDVDCSDSGRRKVQNKTRTVLNIHKCRHYYVKVRPIFSNAEEGTFSEAIMFSPPRRPNKGFIGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKG3</accession>
    <name>A0A7D9DKG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086309</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001103">
        <property type="protein sequence ID" value="CAB3986992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKG3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="282" mass="32313" checksum="1E0A3C934162C104" modified="2020-12-02" version="1">MCINLETTNNIKPNHIDEKSVSFNRIKLAISKQSQTEHQDNNNRSFNDLQVAEFKDTYASLQTEPNLVPAPDISGTNVSFMAENNREISCNSAECHIPVINNQCAALLRSPTECSQPSENDSLSHKGPKSTKHTTTYTKSKLLNPEGITHYVGKPSKHYDKHHKLSYSDWISRLPLIEQFPKQLNQHDEIKGKANKQGKTHFKILQNGLAKPPRSQKGIHFLLMRTPVTPPRGVAHQNFRTRRSYHRAPDWYRHLDLVSRITRMKHCRPILSPSEFPIVIRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSG8</accession>
    <name>A0A7D9DSG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002152">
        <property type="protein sequence ID" value="CAB3992925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSG8"/>
    <dbReference type="OrthoDB" id="5984088at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="28072" checksum="688E789A3742F49C" modified="2020-12-02" version="1">MTVWMAYNNGPGKVLPLTNFCRPPTVPKLIHSEETEDTVSFVAVKARQQPKKSREQNNTDPMEDESNDERVDTYSKLFLCPEQGCIKSFHTYSSLERHLHCDNHTYGDFLTPQQIASFFSRLAKKRRENTAGDKDNEERGDGDDNDYEEDDLNKKDFEKRKGQEIEELSASLIDAIGLKHPIMFDRHNICELTNQRKLSKFSVYMLQEICSSFELNITDSTGKRKFKKPYIDLLEKLVQSCGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3C4</accession>
    <name>A0A7D9E3C4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044836</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003888">
        <property type="protein sequence ID" value="CAB4000658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3C4"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="457" mass="52147" checksum="1A0835A997A5C743" modified="2020-12-02" version="1">MPALSNPNIPITQRTVIKCCCGKVCKGNRGLKMHQRSCQVLHGLNNDLHLHEQIADNPENIITDDRPLTTQSTLDSEDLKKALNNLKSTYSEVAEIKYVYVSRILRNKLRNHGDIQRDSNRNNSFNHDKYVERNFLGFIKTVLNKEDAVFPSFSMTECAVYFTKTLAAVHPGKLFHIPSWIPRLSDPQVEFDLDPPSYQQVTAVIRKMKASGSPCPLDQISVICFKRCPYLRTYLTELIRSVWLSGSIPSEWKRACTILIHKKGNTSIPSNFRPITLESIPLKVFTSCLRNAMYSFLSANNFIEHNIQKGFTPNLSGTMEHTSQMANIINKARIKQRSLVITLLDLKNVFGEVHHNLIQSVLGYHHIPNHMNNLIKSLYTDFKTSVITSEFRTHFIPVGRGVLQGGCLSHLLFNMCFNTYIQHIKAEKYRQFGFSLQLLNPIHWFQFADDAAVITGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E6M4</accession>
    <name>A0A7D9E6M4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004230">
        <property type="protein sequence ID" value="CAB4002004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E6M4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="226"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="415" mass="46778" checksum="7C9A8D5A05DC4A67" modified="2020-12-02" version="1" fragment="single">TSKKRPCGATNVHLELKTRKPYQMDEDLISTIHWELNTTLCQFFERKKLEYITHELSSTMKGCNPGGNTIKTSFSHYKSTLERKRYLTNDLDKSILNGIKDEEIKAEIEEALKFTDAINLTLIALKEAKISKGNEGKNVENASQHEVEKEEITTHRIFQSVSSGNFCACTMKNHISNTSRSRTRCGECQGRLYTSICSQGKETRTQEMKSVELQTVERGGNNRAENSSKQDPRNKDIAAPEESLKMCVNTKNAVLLQTAKGRIYRPDMPHRKHKARIFLDGRRHRTRKSHVTEKVRNEINLVISHSESLAIKSFGSSGGTAQVCDIVDLCISVDGDYDVKLSAISVPLISAPVQGQYLKHAVKSYPYLPNLQLADDCEGHSPTDVIVGTDQYWNLAIVTGEWPEENLDQLLYIQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ECX5</accession>
    <name>A0A7D9ECX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034147</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004860">
        <property type="protein sequence ID" value="CAB4004298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ECX5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11887" checksum="E7AB6C0062896687" modified="2020-12-02" version="1">MAPTFDRDLEMTKRGGQKTGKSMCKLSGSKDITLTTTKSDKTGKPISILTTRYTANAKCEPRNKSITLVGNRRFKCRPINQEIKERTPGSTGKIKNITVGCEVFIFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEZ5</accession>
    <name>A0A7D9EEZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 ubiquitin- ligase rnf213-alpha-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082383</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005983">
        <property type="protein sequence ID" value="CAB4007989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEZ5"/>
    <dbReference type="OrthoDB" id="5976613at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031248">
        <property type="entry name" value="RNF213"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605:SF16">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605">
        <property type="entry name" value="RZ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="888" mass="102550" checksum="E6F89C9A52DCB92A" modified="2020-12-02" version="1">MEKAKSEWIGEIQHKTLLLKSLSAQDVGIYKCKIYFLKYSAFESANIKLKASDIKWWRSKDGKEYELITQCLASKKCEFHGGKENISKTSFEIKDLRFPQDNFFYKCNASNDYGKDSETFHLEVYVKPEINMQTIYRFKEGLIINCSLKRSNPAEVKFTWYSCNTPNCGEKSQNLTETSILRLDSQPESVMKYQCKAKNAAGSASKIIEAWTELLSLSTEEIFYKPWHDKFIDKFQSRIRKLSSLRQIQLFCQSGQQDCNPDIAECLSVAAFDAMDKCVKGGVDEQHVFDYLTHNSSTNGIKLMGTMLDKAWPTALKEGSQGEDEILLKHLLTWPFWPGFLNYFASSSRGKEELTKEGYCAFMIARTESCLYNLINSVENGTVTVATLKLLKDNSKQYLKLTEMHQENLNSRPNVGVSTVYFLSLRHSEMKAFFTLRNRLECFVGFSNDFKSVDDELRILREKIEQDYDELSIRDLCVKRSARYDTVFFKLDEKFCKMALRITEIKSSRIFDKLWQKYGKNLRDEVVTMEIIFGKIWSKICEKLKSINQQFLDGEMQLNKVDKYLSMFEMDYDALEQEFMLLSKYFNDTTHFEQIKKKLGVIIKKVKSYKKLFDARQAAQAILELQKAMDLKGDFSEVEKIEEIISGDFSSQVVNSVSDKLVKVGELLKEVNPKRRSCLTTFANCFDLVTWLRKSIKDEQELKVFVDLAMISAGEEDMEIDRISCMHTSCLGFGSLIFGYRPDHGVNELMRLCKPVWQAVDANPSIERKLMLTKQGLPWLKRIKKSHGSVDFTTMVQAEAINSSGVYYIANSEKTNDSKHVNSVVKLCLENLVYLVVPKEEKKDREEKVYSFEEIKDVQSKLMLIAGKAENGKEEVDQFNEVCIHFKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EG19</accession>
    <name>A0A7D9EG19_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025128</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006517">
        <property type="protein sequence ID" value="CAB4009623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EG19"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20568" checksum="BDE7D7F3C656D4A8" modified="2020-12-02" version="1">MAEVERANNSKNSNKNKKTAFVFSDEEVEMLISEWGKRDVLINRNRLVKKNELAKKRPVEPVAKVQMMFGTNDFNSLHFLRDNITARKTISTISIRSSSTSPVPPDEDCNLDVIWFEAENSETTFGIDLVQQLDTAPMALSTPPSQAKRKRNAKEISVEDDQSSTVLFERAAAENPHAASISR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ERV8</accession>
    <name>A0A7D9ERV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054659</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008475">
        <property type="protein sequence ID" value="CAB4014856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ERV8"/>
    <dbReference type="OrthoDB" id="5985491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="311" mass="36731" checksum="9E12C4061EAD640F" modified="2020-12-02" version="1">MLCFDPLHRNRTFDNVLTNRSDLFGVKLKPVRKRVRIRDCRKHRKNDFYRALAEENWDNILNAPTVQLAVNELERTIHMNMDKCMPFRTVRMSSRDPVWMTPLIKSLMRIKSRIPSRNVDRIGEINRRILEIISQNRRSLLRAPIGSGEWWKNVDYISQRRRTSANVNLDRNSLMELNDYFANLCQDTSYVEPTPMEICEDVNAPEISEIQVWNNLRHLKKSATGPDLIPYWVWKEHAEIMTPIIHKIWNLSLRSSTWPSSWKRANVNPLPKVDMPKDKTEYRGINITPVIARAFEKSVYNTHTRVLLNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EU39</accession>
    <name>A0A7D9EU39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076716</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008790">
        <property type="protein sequence ID" value="CAB4015635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EU39"/>
    <dbReference type="OrthoDB" id="5244787at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="30670" checksum="3D9A2B703FC0EEFD" modified="2020-12-02" version="1">MINDAQHGFLHGRSCVAQPLTTLHRIGQLLDNNIQTDVIFLDFAKAFDSVDHNILLMKLRMYGISGNLYDWFSSYLCGHTQRIVVQGVASEWSPVTSGVPKGNILGPMLFLLFNNDPTDAIPQATSTGLYADDAKLYRTIMSNEDSACQTALSCAGVWSVDSNITFNTSKCKIMTISRRRRPLIANYHLGSVGLKRVNSEVDLEITLTSNLCWNTHISRIVRKANIMLGLLRRTCPLLTVCNVRRTLYLSLGSIADVKSSPVDIRQRDQGFDIFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EW11</accession>
    <name>A0A7D9EW11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048872</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010084">
        <property type="protein sequence ID" value="CAB4018609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EW11"/>
    <dbReference type="OrthoDB" id="7171700at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="12533" checksum="9A90C15F3D054DD2" modified="2020-12-02" version="1">MAEQEDSVVSLIDEGKSSSLVVDQEDSVSLIVDEEESGSLVVDQEDSASLIVDGGKNDSLVVDQEDSVSLIVDQGKSCSLVVDKKDSVSLIVNKGKNDSLVVDQEDSVSLIVDQGKSCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWP6</accession>
    <name>A0A7D9EWP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">AGAP009518</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009811">
        <property type="protein sequence ID" value="CAB4018013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWP6"/>
    <dbReference type="OrthoDB" id="9448246at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10470" checksum="6C6C5ED6423D12B8" modified="2020-12-02" version="1" fragment="single">APRVLIKQSSGDIKAKEGDVVNLLCSAQGEPPITFSWEKDQKPLDSIVEIEKPHRSSFLVVTVKDQTSFGKYICHIRDRFQSTTHTISIQKDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F1H9</accession>
    <name>A0A7D9F1H9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Hemicentin-1-like von Willebrand factor A domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A052288</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010965">
        <property type="protein sequence ID" value="CAB4020462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F1H9"/>
    <dbReference type="OrthoDB" id="5982218at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056861">
        <property type="entry name" value="HMCN1-like_VWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052577">
        <property type="entry name" value="VWA7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14905">
        <property type="entry name" value="NG37"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14905:SF7">
        <property type="entry name" value="VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25106">
        <property type="entry name" value="VWA_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Hemicentin-1-like von Willebrand factor A" evidence="5">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="268"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="268"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF25106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4020462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="33031" checksum="B061345BF3B71429" modified="2020-12-02" version="1" fragment="single">MSGLYLAVHNSLPNSDVYLFTDADAKDANLVFSVISIALQRKSRITLFISGNCNSFAEQKVYKKLARTTGGQLIDLSKSDIDEAIKLLRPTSVSEEYSSLQKVSLLSVEVTTNNIKTKSYNIQSDSTIAFITAVLSAGGNASIKVVPPEVNYVTSDAHQLFCEAETYEEAITLLKTLYVKTPFARRKLATRKQQAGETSYEYLQELKLLSKDCNFCQVSAAQHRDEAVRDAFITDLLSGNIRQRLLENKTLDLQTAFDQARALDMAQKTSKTYNSNPLTSAAATASPEPEEQNNVGEEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HBL9</accession>
    <name>A0A7D9HBL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Neurogenic locus notch 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A010409</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000079">
        <property type="protein sequence ID" value="CAB3977912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5965221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043005">
        <property type="term" value="C:neuron projection"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050839">
        <property type="term" value="F:cell adhesion molecule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046982">
        <property type="term" value="F:protein heterodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007157">
        <property type="term" value="P:heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048666">
        <property type="term" value="P:neuron development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00055">
        <property type="entry name" value="EGF_Lam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.300.10">
        <property type="entry name" value="Tie2 ligand-binding domain superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013111">
        <property type="entry name" value="EGF_extracell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002049">
        <property type="entry name" value="LE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051216">
        <property type="entry name" value="Teneurin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001846">
        <property type="entry name" value="VWF_type-D"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11219">
        <property type="entry name" value="TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11219:SF69">
        <property type="entry name" value="TENEURIN-A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07974">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00053">
        <property type="entry name" value="EGF_laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25024">
        <property type="entry name" value="EGF_TEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00094">
        <property type="entry name" value="VWD"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="25"/>
    </dbReference>
    <dbReference type="SMART" id="SM00180">
        <property type="entry name" value="EGF_Lam"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01248">
        <property type="entry name" value="EGF_LAM_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51233">
        <property type="entry name" value="VWFD"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="89"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="225"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="337"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="356"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="376"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="395"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3977912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="6351" mass="706177" checksum="306415787462A7C7" modified="2020-12-02" version="1">[encoded data, 6351 characters]</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HBW9</accession>
    <name>A0A7D9HBW9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070387</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000337">
        <property type="protein sequence ID" value="CAB3980924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HBW9"/>
    <dbReference type="OrthoDB" id="5978628at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="310"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="485" mass="55801" checksum="1286EC3E9C4AF72B" modified="2020-12-02" version="1">MFELDEIMRQRESKMFAEILNRLREGKHTPADLQKLKERCVQESNCPQEAPRLFIQNALVDKYNEQVYESFTDNRYTIKAQDSVIGAASAELKEKIMRQIPYVPLRNSKQLAHKLKLAVGQRTEVATNVRTDDGLTNGASNIIKLIQLTDVNKPSGLIWVQFDYEDVGRKTRQENRTLYVREIQSTWTPIKPVTTQFPVGRTKSAQVVRKQFPLRPASAKTVHRSQGDTQTQIVVNLNSNRAFPHIHYVALSRVTTIEGLYITDLCEDKISVDQRVVKEMEILRTEQSLNLCFKPLYMLDQSDLKVCYLNARSLHKHIEDVRRDINYSSMDIMIFTETRFNSSDTDDIYNIDGYRLFRNDVSQGPGPGRPYGGTAVYSRVPLKEGYPYAHNVNGIEFTIIKTESNPHLNIIAVYRSPNIAISRLLSSLRSVLDEDSSAQNIIIGDFNVNWMVESDRQSLYNLMVVQNHYVQATDNRLYNRQQNVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HI42</accession>
    <name>A0A7D9HI42_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069921</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000868">
        <property type="protein sequence ID" value="CAB3985402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HI42"/>
    <dbReference type="OrthoDB" id="5979489at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009263">
        <property type="term" value="P:deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000358">
        <property type="entry name" value="RNR_small_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409:SF21">
        <property type="entry name" value="CAPSID PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409">
        <property type="entry name" value="RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="39334" checksum="ADB13E6B79F2D299" modified="2020-12-02" version="1">MALETMHKDSCMCSKSELDLFSIPPTQVQAVTYTLKQRSLLRPEGNVDADIQVGPSNLWMHALFSQVEVFLNNKLVTPSSTAYPYRAYIETILNFSKDAKDSHLTSALFYKDKAGKMDAVNPLTQDANVNTALKQRHAYTRESKSVAMEGRLHSDLFTQDRYILGAVPIKIKLVRSRDPFCLVSSAEDPNFKVVIEECGLPNRIVIGMVDADAFNGIYTKNPFNFKNYDITTMGLTVNGENLPGKPLQLKFGADSNYISAFQTLYAGAHKIFDNQGNGITREEYANGYTLFVFDLTPDLCLGDHVQPIKKGNVSIECRFGTPLETAINIVVLGEFQSLIEIDANQNVLCDFNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HV56</accession>
    <name>A0A7D9HV56_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">m7GpppN-mRNA hydrolase NUDT17</fullName>
            <ecNumber evidence="8">3.6.1.62</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Nucleoside diphosphate-linked moiety X motif 17</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A055454</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Acts as a decapping enzyme capable of hydrolyzing monomethylated capped RNAs (in vitro). Hydrolyzes monomethylated capped RNA after alpha and beta phosphates to form N(7)-methyl-GDP. Shows low activity towards unmethylated capped RNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a 5'-end (N(7)-methyl 5'-triphosphoguanosine)-ribonucleoside in mRNA + H2O = N(7)-methyl-GDP + a 5'-end phospho-ribonucleoside in mRNA + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:67484"/>
            <dbReference type="Rhea" id="RHEA-COMP:15692"/>
            <dbReference type="Rhea" id="RHEA-COMP:17167"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:63714"/>
            <dbReference type="ChEBI" id="CHEBI:138282"/>
            <dbReference type="ChEBI" id="CHEBI:156461"/>
            <dbReference type="EC" id="3.6.1.62"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.62" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020001897">
        <property type="protein sequence ID" value="CAB3991665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HV56"/>
    <dbReference type="OrthoDB" id="447842at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140933">
        <property type="term" value="F:5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019677">
        <property type="term" value="P:NAD+ catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006742">
        <property type="term" value="P:NADP+ catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04694">
        <property type="entry name" value="NUDIX_Nudt17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050241">
        <property type="entry name" value="NAD-cap_RNA_hydrolase_NudC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033716">
        <property type="entry name" value="Nudt17_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42904:SF1">
        <property type="entry name" value="NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42904">
        <property type="entry name" value="NUDIX HYDROLASE, NUDC SUBFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0464">Manganese</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="13">
        <location>
            <begin position="88"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00026102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00093205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00093415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00093621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00093663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3991665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="31887" checksum="3939EDF7AB2143B2" modified="2020-12-02" version="1">MAKVVRHTVSLFSNDQKTLISAKFEKCCLSVLGCKDNQINVDFDLNGKDLRIQPDDHGVRLEHPSSCPCRFLTLSDISNLSEKSRQSGVRVGVSFVIESADGHVLLTKRPKAMRSFPNIWVTPGGHIEDGETLQQAGIREVQEETGVLTTDANFTMLGLWESVYPPVLAMGLPTSHHIVVYMLAQMPQAHSEIELTLQESEVSAAAWLDEYTVAEIVKSDEYGKTRNVTQKYFSAKVIENGQQVDKKLPLSPLMACMPQSEDWTLPRLSSGSKFALRQWMQNHCAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HW32</accession>
    <name>A0A7D9HW32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069864</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002526">
        <property type="protein sequence ID" value="CAB3994740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HW32"/>
    <dbReference type="OrthoDB" id="5985347at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="208" mass="22965" checksum="A2E8353B5ABF4FDC" modified="2020-12-02" version="1" fragment="single">MLKSLDTAKATGPDGIPAKLLKETADVIAPSLCTLFNKSISSGSLPDEWKTANIVPIHKKGDNKHAENYRPISLLCITSKVLERCVLNNVKYRLLEAVNICQHGFMSGRSCVTNLIDALNYVGSCLDRGEQIDMIYMDMSKAFDKVNHDVLIQKLRNDYGFGGNLLRWFRSYLTNRKQRVTVFGATSNPLSVTSGVPQGSILGPALFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HYA0</accession>
    <name>A0A7D9HYA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053365</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002729">
        <property type="protein sequence ID" value="CAB3995780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HYA0"/>
    <dbReference type="OrthoDB" id="6006301at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="40819" checksum="85789395C9E0ADF7" modified="2020-12-02" version="1">MNEKTEEQFSSPIFSDFTNTDDIDVRVSRQQCELVGFPLLLNYHYTEAKKSNNTKKQKKLQGLLEIHNHLLLKPDDNSVEHTGYIDFDIVHELYCGHQEQHIEKKDFRDILLHPDYGLCVYVANFLQFNKRYIILKTQTLDLPSFIADINNMINRDKDASTQASKIRLDLDKVGLKHLLDSMDSEWDKTCAKVMLAANRSRGEIEELGLLPDAVVNNVKQVRNVIVKIEETETAAHETVLLRLRQRQQNLKVKVDECTSVIEQKVGKWHDYRISDVYEKLDVLKEQLEENNTQINCLEKLDEADKYTKQKVRQRIKRTANQLEYCNRIKKGKLVLEQKHCWIHLMRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IFV9</accession>
    <name>A0A7D9IFV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transmembrane prolyl 4-hydroxylase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A064661</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>L-ascorbate</name>
            <dbReference type="ChEBI" id="CHEBI:38290"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005572">
        <property type="protein sequence ID" value="CAB4006676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IFV9"/>
    <dbReference type="OrthoDB" id="420380at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031418">
        <property type="term" value="F:L-ascorbic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004656">
        <property type="term" value="F:procollagen-proline 4-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.620">
        <property type="entry name" value="q2cbj1_9rhob like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045054">
        <property type="entry name" value="P4HA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006620">
        <property type="entry name" value="Pro_4_hyd_alph"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044862">
        <property type="entry name" value="Pro_4_hyd_alph_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10869">
        <property type="entry name" value="PROLYL 4-HYDROXYLASE ALPHA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10869:SF246">
        <property type="entry name" value="TRANSMEMBRANE PROLYL 4-HYDROXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13640">
        <property type="entry name" value="2OG-FeII_Oxy_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00702">
        <property type="entry name" value="P4Hc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-0847">Vitamin C</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4006676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="40686" checksum="28FE204A91E3379D" modified="2020-12-02" version="1">MKPTIFEIPNFLTDSECEHIQNLAKKNGLRESVAGFEEQAYKGEIEDALKQSENENYALHLPEFVDHFYEWDRNGDSFITMDEVKEMCERSNGLFFSENEITDMFSKINYSLFDDGRINEDEFNLLPFNKLDAYLNFVHSKHPFHRPRYSEHTWLTEQKQKDPVLTKVYDRIIRLTQLPRKLVDGSEDVQIVRYNIRGHYHAHYDSTPEDFGKNVVCCHQNHDRHKECKLCRILTVLYYLNDVDEGGETAFLVADNTTLDVKYLKSLNKMFNLSKRCHTSNLLIPARKGTAIMWYNHEVDPRSGWLGDLDYHTIHGGCDVLRGEKWIANSWINAPTSESAHVSSVFYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IP31</accession>
    <name>A0A7D9IP31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007801">
        <property type="protein sequence ID" value="CAB4013206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IP31"/>
    <dbReference type="OrthoDB" id="5949486at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="19149" checksum="A2E9C8E77F777213" modified="2020-12-02" version="1" fragment="single">MELEIECTDKQKADYISKLIDIDDWQITDKCFDLVEEAWGPHTIDCFANYYNTKTRRFFSWHSWNPDCTGVDFFVQSITGENCLVVPPICLIARALHYLQKHKAEAAVIVPFWPSSYFWPVILRHMASFIVEYKVINGREVLTHGRNANSLLGSERFCGKLLALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IS39</accession>
    <name>A0A7D9IS39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009121</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008336">
        <property type="protein sequence ID" value="CAB4014514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IS39"/>
    <dbReference type="OrthoDB" id="5974783at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09076">
        <property type="entry name" value="L1-EN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="47863" checksum="9CC78889FB96046B" modified="2020-12-02" version="1">MEQGVGTERVLESWLANSCGVGILLRDPDRFKHCTYRCDAVGRIISLDCTFNSQDLRFINIYAPTDGTKRIEFFQSLDTHFVSHRRFIIGGDFNCMLELAKDKYGGNPASGDTGVLHLKKLIQRFDLVDIWQFTWQTKRGSIKCRLDRFYFSSSLVRDYDVETDITIYPYSDHDFVRVLLTVDKASSNVGPGVWKLNVSLLQVQEVREQIASFWEHWKDRKSDFGNVAEWWDYGKLRVKSLFLKYSHKASRKRKQERATILNRYRRIVCKTNLSEDEVKELDLVKSQMETEKRRAVKKTCHALRTSDGRRGTEQDDISKEQVRFYKELYSKVPTDKVAQDRLLNLLDRKLTNEQRDSCEGQLTVGECLVAVESMANVKTPGSDGLPKEFYLSFWDLLKEDFVEMANYCFFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ISA3</accession>
    <name>A0A7D9ISA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069929</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007986">
        <property type="protein sequence ID" value="CAB4013696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ISA3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11842" checksum="C5BDF400C71E57FA" modified="2020-12-02" version="1">MSRLLFQSKIRHSSREKPSCCPDIKLCDWTRLEKFIRGNSDEQHHCYNSSKTAQYNFQYIPDAEPDIVTLKDIEEKIEAGSKVRVKSVVKKGEAVKKVGSKNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ISG3</accession>
    <name>A0A7D9ISG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044571</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008031">
        <property type="protein sequence ID" value="CAB4013811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ISG3"/>
    <dbReference type="OrthoDB" id="5989289at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="43959" checksum="E1522D5910015174" modified="2020-12-02" version="1">MSTNKEGDLKEKYSDVFKGLGCLRKPYHIELDPEVSPVINAARKVPVAIKGRLKLELEEMEKQGVIHKVDRPTDWVNSIAIVENPGTERLRICLDPKHLNEAIRRKHFQLPTVEEIASRISGAKVFSKLDARHGYWQVPVDEPSQLLTTFSTPFGRYFFTRMPFGIKSAQEVFQKRISQHLDDLKGVATEIDDILIWGSDEQEHGARLEATLQQCEEINLTLNVDKCKFNVNEVSYCGHNFTKDGVTHDESKIKAIQDMPTPSSKKEIERLLGIVNYLAKCVPNLATITAPIRELLKKDIEFYWSHEQTKAFDEVKEILTQQPVLKFFYPTKPVIVRCDASQNGLGAILIQEEQPIVYASRSMTEAENRYAEIEKELFSVLFALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J0L1</accession>
    <name>A0A7D9J0L1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083302</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009609">
        <property type="protein sequence ID" value="CAB4017572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J0L1"/>
    <dbReference type="OrthoDB" id="8007176at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29715" checksum="FC833F9C51FF93FD" modified="2020-12-02" version="1">MPTEIMIDKLRIQKYSPKTNQPPITLCKTNTKVYGYGANTPLPNVGKFDIEIESSTRIVVTTIYVMQGTCGSLLTYETALALNLIKLTINATENQEPEVQEENKLKQLLDKYNDRYHGVGKLKDCQVHLHINETITPSPQPHRRIPFHLRKGLEQELTQLEHEGIIEKVHGPTSWVSPLVVVPKPKNSNKVRLCVDMRVADKAIERERHITPTIDDLINDLNGATVFSKLNLNQGYYQLELAPESRYITTFSAHKGLRRHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3G8</accession>
    <name>A0A7D9J3G8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NDRG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011270">
        <property type="protein sequence ID" value="CAB4021104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3G8"/>
    <dbReference type="OrthoDB" id="741027at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004142">
        <property type="entry name" value="NDRG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11034">
        <property type="entry name" value="N-MYC DOWNSTREAM REGULATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03096">
        <property type="entry name" value="Ndr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24180" checksum="7B6317301D7F6970" modified="2020-12-02" version="1">MSTKAEIYRPSGQPTASSFVQVDIDEVAKQAETKSMEELQLQNIKLLDEKDGQNFYAPEEKSLIRKEEIDTNHGKLHITLHGTEGKPAIITFHDIGQNHISAFQSFLNCTEMAPILQYFTIYHIDAPGQQDQAAQFPETFQYPSMDDLAEAVSDVVAHFKLKSFVGLGIGAGASILCRYGLKYPKLVDGLLLINCFSGKSGWVEWGYEKVLTTVSIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JKF2</accession>
    <name>A0A7D9JKF2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017803">
        <property type="protein sequence ID" value="CAB4031650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JKF2"/>
    <dbReference type="OrthoDB" id="10041530at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="683"/>
            <end position="771"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="684"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="771" mass="87640" checksum="4B5FD2C9E641E22C" modified="2020-12-02" version="1" fragment="single">GVKTVADDILVIGNGDSLAEAITDHDAKMKQLLDRCRERGVKLNGTKFLLKQTSVPYIGHVLTSAGVKPDPAKIEAIIKMERPTNVERVRRIMGTINYLAKFLPQLSDVSEPLRQLTKKDVVFVWDQVHDQAFTKLKELVTKPPLLKFYEPEKELVIQCDASEGGLGAALLQDGRPIAYASRALNSTVRNYAQIEKELLAIVFAAERFHQYTFGRPVCVDSDHKPLETIFAKPLVSAPRRLQRMLMRLQMYDLSVRYKRGTELYLADTLSRHYLTAVQETREADVLNYLSDVEIEQGEHEEIMEINQLLANEDVANMYRDKTDQDEDLQVLKRVIQSGWPVVKNNLPAAVGSYFHIRDELVVQDGLILRGDRLVIPKAHRKTMMESLHASHQGIEATLRRARETMYWPNMNAEIKDYVKKCDLCCSIGPKQSKETLISHEVPDRPWGKIATDLFEFDGKEYLVTVDYFSNFFEIDRLYSTQAVSVIRKLKAHLVRYGIPEELISDQGPQFTSGEFKNFCASYGMKHTMTSLHYHQANGMAEAAVKQAKRVLKVAKMSGRDPHLALLDLRNTPQEGFSSSPAQRLMSRRTKTVLPISKGLLKPAVIENTKQQRRARQGRQKKFYNWGARDLPALAAGDQVWIQPVKVGDREWKKATVLREAGIRSYEVETENDRTLIRNRRHLKEAKSRSANGDDHQQIQELPKTPEVAERGSSDFDGETDPIPELIPDPDRGAQSSNESGMLSGDMRDNIITRTRSGRISQRPKYLDDYST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JL34</accession>
    <name>A0A7D9JL34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017986">
        <property type="protein sequence ID" value="CAB4031920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JL34"/>
    <dbReference type="OrthoDB" id="5986179at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21132" checksum="E3313D69011EF80A" modified="2020-12-02" version="1" fragment="single">MAQRGRKSGSTRRGAGKAKTRKRQLSVYEVSQLVVNKKIKSRLELLSFAQEQQREGKTDLVQFIANRGSKAVDEAIRVGWELKEAPSLVVRYRQSRLERLQVAFEGDCILNCNKKWLDLARNILMRNNIEISEFVGAVRLLLEKGRGKYRNILVTGPSNCGKTFILNPLNVIYDTFSNPASTSFAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPX5</accession>
    <name>A0A7D9JPX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019951">
        <property type="protein sequence ID" value="CAB4034238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPX5"/>
    <dbReference type="OrthoDB" id="6014134at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="17317" checksum="86A1D62EED8B95B1" modified="2020-12-02" version="1" fragment="single">MNSSALQLVQVIDENGEDIAFYDDIDLGITLENFRQLLIKKLAYATLANATPTFDFAFKNAPISLTQENFLTLQQVTCKLESGDNRFKITLKFRNKRHCFTESSAPAKKQQCREKRLFWNTLTAKLDQHPIYGNWTVQEKHRILDTEWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JQF6</accession>
    <name>A0A7D9JQF6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">THAP domain-containing 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A039922</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019144">
        <property type="protein sequence ID" value="CAB4033320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JQF6"/>
    <dbReference type="OrthoDB" id="5982876at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.210.20">
        <property type="entry name" value="THAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026516">
        <property type="entry name" value="THAP1/10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038441">
        <property type="entry name" value="THAP_Znf_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600">
        <property type="entry name" value="THAP DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600:SF11">
        <property type="entry name" value="THAP DOMAIN-CONTAINING PROTEIN 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4033320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15420" checksum="0ADE5C86560AF9C6" modified="2020-12-02" version="1" fragment="single">MTSKGESSHRGGKYCVAGKPNNVSCTNGQHTKEVSIHHFPNATKEPKRHTKWVKFVGKHRPGWNPSETSLCSSHFEDSCFEQNRIIAASLGIKDIYSWGIGKFSPLLFLVNLEYTCFYCFGDQVRVIPKSMPEVIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JUE3</accession>
    <name>A0A7D9JUE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014839</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021813">
        <property type="protein sequence ID" value="CAB4036234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JUE3"/>
    <dbReference type="OrthoDB" id="5982836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13191" checksum="52FBD120A5BE8EB5" modified="2020-12-02" version="1" fragment="single">TVLDLVGTLKQVKSLDDIQMIANETARWFLLGRVCSSLERLKDGLNVLDVLGAVFENPDIFRPVFCYVSQPLTVDLLSSLFTNTTRGELGSNAHAKESLILFFWNDYLQDVEEHTVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KHE7</accession>
    <name>A0A7D9KHE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011516</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039860">
        <property type="protein sequence ID" value="CAB4045507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KHE7"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26270" checksum="29D9A3D2D97A2766" modified="2020-12-02" version="1">MNNNPMYILTLPQSDEIMTAQGGEAKGNYKLDNLELEYETIENDTLAGEVSRMYSTGRSLSYKHVTLMRTSNWDKDLTIVNENINIPRKSMSAIVLLFTSRVITDSEEYIYPNIDKVNLTIEGVPNAVFSQGLHKNRFFEEAKRFFCPMCEKSMADKFMSISKFFSNGFALVIDLRSTRDDTTGGGKKIVNTQSGVLMEIKKKATTADVQCNVFVVSDALLNFASRDLSSIQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2J1</accession>
    <name>A0A7D9L2J1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012854">
        <property type="protein sequence ID" value="CAB4024129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2J1"/>
    <dbReference type="OrthoDB" id="5244787at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="28684" checksum="26F62FAF86A5EF0D" modified="2020-12-02" version="1" fragment="single">MALQQNQRLRQLRFLIYTFTSVFTKPSGEINGDEDEYEDITNVTNIGELQVSGPDGIPARILKECSCSIAPSLCELFNLSLLVGRLPVETQIDGVDDVASNWSSVTSGVPQGSILGPLLFVLFINDLPNIIPEDSDAALYADDAKTFRKITSEVDGQHLQQTLTYLTTCSNTNNIKFNESKCKVLTVSRKKKPITFAYHLGSTNLHHVQEEKDLGVIMTGNLSWNFHVQSITSKANKLLGLLRRTCPLLTDVRVRRTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2W5</accession>
    <name>A0A7D9L2W5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085651</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013144">
        <property type="protein sequence ID" value="CAB4024633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2W5"/>
    <dbReference type="OrthoDB" id="2017893at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031624">
        <property type="term" value="F:ubiquitin conjugating enzyme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042415">
        <property type="term" value="P:norepinephrine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032436">
        <property type="term" value="P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000209">
        <property type="term" value="P:protein polyubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042428">
        <property type="term" value="P:serotonin metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033263">
        <property type="entry name" value="RNF180"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46717">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF180"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46717:SF1">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF180"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="20648" checksum="F524754942D7E2CD" modified="2020-12-02" version="1" fragment="single">MEGLYSHDVDLLEPHSEEKTYCIRCRLCRKQLIVSNKIKRSHLSGDKATEPCGNCIFLDEEFLSDWIRDEIENSSWTKGCLKCPGVGCPARVGGFDFVQGLLCRCGEFTIPAIWIQDGKVDVRAINSNHVMPTAKPSLTSSEKSCSGQIPVSEKSSNVTGYGNYSTNRPSLISNDNLNSKQMPELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L4K4</accession>
    <name>A0A7D9L4K4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001597</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014483">
        <property type="protein sequence ID" value="CAB4026909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L4K4"/>
    <dbReference type="OrthoDB" id="5987252at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10943" checksum="32C202ABA976F5F9" modified="2020-12-02" version="1" fragment="single">DPNSGTRKLPIVVDKFDSLPLWPQYSDSNEEFLDMESFSQMTVRTKLREKYCTFLNDPEGFIKKETSGSTKNFINLRAWLTMVAFYVIFYLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LR85</accession>
    <name>A0A7D9LR85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transient receptor potential cation channel subfamily A member 1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A045102</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023808">
        <property type="protein sequence ID" value="CAB4038103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LR85"/>
    <dbReference type="OrthoDB" id="1661883at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:RNA nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24141">
        <property type="entry name" value="2-5A-DEPENDENT RIBONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24141:SF1">
        <property type="entry name" value="2-5A-DEPENDENT RIBONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13637">
        <property type="entry name" value="Ank_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="29"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="43"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4038103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="288" mass="30999" checksum="70380425B0BA08AE" modified="2020-12-02" version="1" fragment="single">PNIPGEDGATPMHFAARYRPLNVLKQLRSTQSTTDITAEEASQENAEPTGNLLTVETPDTVDSAEDSSESILNCLLQKSSSNVNSQDNYGSTPLHYAASKGNPRSVEELLKYGKADVTARDKQKATPLHEACTQGNPNVAKLLIGAGADLQARDDEKMTPLHYAAMSERVDCVKVVVDAAEDGGGMSLVERIIAEVDREGQTALHIAVDASAKKTAQYLLFKGAEVNAVRMNMATPLHLAATAGDIETVEMLLNFKANVEAKNINHETPLHKAALFNNVPVIDLLLDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LYM4</accession>
    <name>A0A7D9LYM4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027133">
        <property type="protein sequence ID" value="CAB4040695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LYM4"/>
    <dbReference type="OrthoDB" id="5989504at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="39433" checksum="B1DB4E93E1EBCF9D" modified="2020-12-02" version="1" fragment="single">MASSNALSCTCILCFRIIEKAHERYLVSGKTKFDLKEALRQLPFVILESSPYICRQCCDKLRKRNNLISQEKIIVNELKETYERGRLKRRQLFAEEGPSTKRPCILSANSPTTSQTKATVERGRVDSPPPVLPEVPTPISHSTPVKSIAKEASETSVNVTVTWPSQTRQRELHSDLQSLGKMLVRGTYKQIANAAWGNLHIRKHLVFNILKNIDKECVDLCSKKNPSCLRSPSKEKMLNFSLENQRKEMEERAPLLFSILVAAGSTRTKREEKTWTPAVCMASSILLRNRSQCMNAIQLMLGIFLYHSNWAPVMSRFSKLRLVTSPNHLYKKLEEYGVDHDEIISM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MBY8</accession>
    <name>A0A7D9MBY8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF7041 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A002643</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039766">
        <property type="protein sequence ID" value="CAB4045488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MBY8"/>
    <dbReference type="OrthoDB" id="6260718at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055469">
        <property type="entry name" value="DUF7041"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23055">
        <property type="entry name" value="DUF7041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7041" evidence="2">
        <location>
            <begin position="104"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="260"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="277"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4045488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="296" mass="33183" checksum="93F19B2E31D21221" modified="2020-12-02" version="1" fragment="single">NDTYTGDPPLVDKEQEQKFREKVFSHAVDTPEYAPTNLRLSVKRPGGYHRLHQTVPGWRAHESGVSPIEDLESDLMDIVVETPLPAFRSPDKPGTRTKVDVGSFDETFPEVWFRKLEVQLDAAGLTRSSARFSELLRFLDTRHTLAISSVLDGSEDDKYERAKKILLTLFLPDKPSRISNILCEKLGDGETLADLRARIGPRSADLTIDDFRKFILFREVSPNIATHLATSFDTLSLEDFQIAGDKLLAEERRRLAANNTIGAVGATKPAGRRNRREKNSSAKKQDGNAQERPRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FEN1</accession>
    <name>A0A6S7FEN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075898</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000073">
        <property type="protein sequence ID" value="CAB3977834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FEN1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00117">
        <property type="entry name" value="TFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="22145" checksum="AEDFDDE1666D78F1" modified="2020-12-02" version="1">MSEAVLKSQTGWGRWAVFLLSYVGIVWVGVNCAQLSCHSCKTLLQTNQTPAKCNRTVENCDIQNSFCGILLWYKENAGVIYQESCVPHDVCRNVTAGCPKKSCYLYCCSKDQCNMYDQVNQSIDNSLASIMKEHPNMVPTEPASTKTVINESTTLPTNDILSTLDTRPPCLALASLLKCSRLTMVLLLTVIFLKDYIEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FGQ9</accession>
    <name>A0A6S7FGQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized phage-encoded</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A024214</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000022">
        <property type="protein sequence ID" value="CAB3976962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FGQ9"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014883">
        <property type="entry name" value="VRR_NUC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180:SF2">
        <property type="entry name" value="BRO FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08774">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00990">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3976962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="34417" checksum="AADD3E734F5C8CE4" modified="2020-12-02" version="1">MEKLFKNRELNVSVRIVKSGEGVLFYAKDVAESLGYSNTKKAIRNHVWEEDKCTLGSIQRGAPEGPTLKGHPSSILITEQGLYQLIFGSELNTARDFRSRVFKEVLPSIRKTGSYNLPDRRSLRYNQMILLNETDLHTTVVSYIRDNYPEAVIIPGLGEYQDTVSKRCDAWKKGYRSGQPDLIIENPKGKYKGFAIEFKSPKGTGVLSERQQLWLIKLRSMGYDTLVSDDIVKTCIRINEYFSLKKPRKVATKNPVYNVKTYRPRFSSDLSYLTSKSKTSHKQIQDISQVEHKISHETQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FV35</accession>
    <name>A0A6S7FV35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013495</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000101">
        <property type="protein sequence ID" value="CAB3978290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FV35"/>
    <dbReference type="OrthoDB" id="5983777at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="694" mass="77564" checksum="188F58074E8F6C02" modified="2020-12-02" version="1">MNDRISTRSGDFDPSTELFTAYSERLEQYFIANSIGQCPGDATQEVLAAADKKKVAVFISVIGKKSYATLRDLCSPDSPKDKSFSELCEMLRTHYKPKRLVVAETYRFHRCIQEENDNVSHYSARLRHYASTCDFGQFLNRSLRDQFICGIRNSATRKKLLNEDRTFQDVLKVAIADEVASKETLAFQNNTKPVNESVHTVGRNQIPDKFSNSRNTSNSNNLRPPLPTAQKFSYACYSCGGTEHFRAQCRFRNAVCSRCKRTGHIARVCKRGNMQNNFVEQKLSSDDVFLEEELFTVFDVNSLYKSEISVPLKIENQECSLQLDTGCALSLAPQTFYEQFCSHIPLKPTAVRLSTYTGEKIQPLGQINVNVTYAGTQHSLPLLVVPQGSGVLFGRNWLRCIKLDWNNLPGIELPSFTTTATCSKISENKNTLDSLLSKYDELFQPQIGCYTGDAVVLNESKGAKFHKARPVPYAIQTRVESALLKMEKDGVIERVSSAVSAAPIVTVGKKDGDEVRVCGDFSVTYNACAEVETYPMPKIEDMHSALRGCQVFSVLDLKQAYHQIPISTESQKYLTINTHLGLFAFKRLPNGIHSGPAIFQRIMDGLLADIPKAVSRLDDILIAGTDYEDHLNTLSQVLERLLKFGFKLNKSKCKFLQSSVVYLGHLIDSAGLHPTEDKLAAVRDAPPSKGYYGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZW6</accession>
    <name>A0A6S7FZW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000432">
        <property type="protein sequence ID" value="CAB3981822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZW6"/>
    <dbReference type="OrthoDB" id="5960351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="939" mass="106850" checksum="F78E1A54CD022E64" modified="2020-12-02" version="1">MLLKETVLKNKFDVFTISETWLNNSVTNLELEIPGYEIFRADRNNKDGGGVCVYVLNTYKTELLRDISSISGSGLHQLWIKVQVRNLKSIVICTIYKPPDVHANCFDTDLTPNFITASLLGKPIYILGDANCNMLKPDSQNSSVFINFCSCFNLTQIIKSPTRVTPNSESLIDVILATNPNQVLETKVLLHCSISDHDLVYAVLRLKKECPKPVHITTRSFKSYNASEFCADILQAPWSITDVFDDAEDKLYAFNSLFNDILDKHAPVKTIKLKGKPNCCITEEIRELMKTRDEWKKTARKTNDPFAWSAFKNFRREVKRRIRFSEREYVREQIKSNRNNTNSIWKSIRSCIPKKSATHKVYSKDHKTVADEFNEFFASIGQNTVKKIEKMAADENYDLNENPFKPRHYLPSEQFSFTAVEREEVESIVMSMAPNKAPANDKVPIHVIKTCLTVISPTITSIINASLLTSSFPSVWKNAEVVPIHKGGDHEIANNNRPISLLPVLSKICERAAYNQFSTYLLLNDRLSSKQSGNKHLHSTETSVIQTTDMILNAIDKKQLTAIVLLDMSKAFDSIDTTTLITKLEDVGASCQAIQWFQSYLTSRYQVVRIQTTLSEPLEVKSGVPQGSILGPLLFSIYVNDLPSDPQQCSLYSYVDDTKLLMSFSLQHQQRAVSEINQDLLRIRNWCFDNKLLLNPGKTKAMICGSRQMRAKLPNFRLSLLGKEIIVTSAKDLGVILDSGMTFDSHVQATISSCMSRLGQINRVKHCFDKHTLTIIINSLVFSKLYYCSTVWSNTSQTNLNKVQVVQNFACRIVSGVGKYDHVTPILQELKWLPVRQYLYFRDAVMAFKCMTGNAPAYLTEQFVRRGDISSRVTRNSSMIETPLHRTATGQRSFKFRMATIWNSLKPELRACETTKDSKHILKQRLVETFKFRTNLKTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0L1</accession>
    <name>A0A6S7G0L1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066910</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001002">
        <property type="protein sequence ID" value="CAB3986334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0L1"/>
    <dbReference type="OrthoDB" id="5985073at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63748">
        <property type="entry name" value="Tudor/PWWP/MBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12257" checksum="F5F14C0BF4D7A921" modified="2020-12-02" version="1" fragment="single">GARVFARWTNGLYYRSFVSESTSSSVAVTYDDGVKAALSKNDKAAIILDKIPEEDQVKIDQKVIGYWPSDGEYYLGYISQLCDDGSKYFTKFDDGGERCEAIYEIRTVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G1B9</accession>
    <name>A0A6S7G1B9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024208</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000904">
        <property type="protein sequence ID" value="CAB3985698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G1B9"/>
    <dbReference type="OrthoDB" id="419189at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="25467" checksum="E817830D86646DF2" modified="2020-12-02" version="1">MVNLSLQTGHFPVDWKNAVVHPNLKKENSEPNFANDRPLGNLAFTSKLTEKAANNQLHSFLDEEQLFPSGQSAYRTYHSTETLLLKFKNDLLLNMNKQHVTLVVLLDLSAAFDTVDHMILLQRLQHKFGISDTGLKWFSSYLAGRSQRIIINGVQSDMFKLEHGVPQGSCLGPLLFVLYTSKLFDIVRSHLPNAFSYADDSQLYISFKPGHMANETTAMPLIAMQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9K6</accession>
    <name>A0A6S7G9K6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039099</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001320">
        <property type="protein sequence ID" value="CAB3988405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9K6"/>
    <dbReference type="OrthoDB" id="5959877at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010281">
        <property type="entry name" value="DUF885"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33361:SF2">
        <property type="entry name" value="DUF885 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33361">
        <property type="entry name" value="GLR0591 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05960">
        <property type="entry name" value="DUF885"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="966"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="966" mass="112374" checksum="1D4D59FF02625E02" modified="2020-12-02" version="1" fragment="single">HAGSIPVLQNGIMNDASTFGCKENGSNFIAMLIKSYFYYISHPGLHLKLMRKRENVYASLSSWRTSVLEEQQLHSSHVIKAEESDFDGFSHARELKAVLANDYEMYIVHPFDLIQLVSSLRATQIINAYRYAATHNVLPRKFHIARINHHQDFNYFKIISKYTTCQTATQKMAARVIETSKLPTYVIKKYAQKGLTVLFITLRTRKLSLTFRFCLQETCRWHDKRYRYFVHIRRKKWSQNRLSVCVVNLQLYTLQINYWIQSYKYFIDTFLIYNFYAKNLISFVMMTFQSMPHTQMTKGFFPISITLVKYLYDRMDIYGFHFFFRCCILGPLALMENSLSEIFQTRTCMISTNRRKCAHIILYKLFIKSSLRMMNKYLKTRKANQVLVQAKLQEHADAVYQYIENMKEGVRRGMIRSVDDCKAGIDAVKHRYLKISLHGKTAINTSYPASINKKNSLEMIELSNFLLDITQEERMRWFKETGEHVNKTVDNYFVELIGKPIADLIDYLETTHIRYCVPSSESSGLANLPQDYVYLDGNRTGQKTNKTLPTGEAINGSKTYERILSYFTTTNLTPDQIYELGYNQVETLYPQVLEVARNVTGIFNDTEAVRKFREMLTNHSNYYNSEPFPKNESNEEAHKRCSNIEDAKKYCPKRWEAAEKWWTDARMAMSLIDSKTINMFYFTGKKHTTPNCPVELHPDLNPSSGAQSYVESNNKCSHGAAYNIPFFLNNAGPRFSEWSVNAHEARPGHHTQVQGNIENFEDNCDDTISWLHSITYHTALVEGWGLYAESPLIAETDIYDNNLMQKYGMLKWQIWRALRLVVDSGIHAKGLTRAEALDLFDKYAWDNTDIARKEVTRYQSVFGQATAYTIGQLSITQFRDEARRNLKEKFNLKEFHYQLLSQGSSPLSYLASHITKYVQCELQPEGDGCKYIFSPPKIETPHEERKTVAGLPVKPSLPQLHRRHYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAW6</accession>
    <name>A0A6S7GAW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tyrosine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001287">
        <property type="protein sequence ID" value="CAB3988153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAW6"/>
    <dbReference type="OrthoDB" id="5985221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006914">
        <property type="term" value="P:autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010506">
        <property type="term" value="P:regulation of autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00180">
        <property type="entry name" value="PKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045269">
        <property type="entry name" value="Atg1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24348">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="37894" checksum="5E8F3DBBC8E4F9B5" modified="2020-12-02" version="1">MEGSFKLPKLVPKQKKDLELPRFDWASIAKQKKLGSGSFGSVYLAKHAGTAQNVVVKKLKSVSIDSQTRFVKEAKILNSVKGHRNISKFLGFCSEPHSIMMQYSRFDCGFFGVEKSVSSLADFLQFVDTEFEFSSVANLLPVCVKDILAGLDYLHNHNIAHRDLKPGNILVCNQHLDDVAGDDKAMAKAYEECPIVCQLTDFGLSRSVDIQTKSVVMSKTTSVSCGTPAYMAPEMQLNQLVFASHEDLKRADMWSLGLVMHTMINPDLGSPYRAELEQSSAPDIHMALKDLLTKHRLPQHGAKYEQLRITSWWQLEDIFNRCANFDAQQLVASFGGSKVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAX3</accession>
    <name>A0A6S7GAX3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045648</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001005">
        <property type="protein sequence ID" value="CAB3986369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAX3"/>
    <dbReference type="OrthoDB" id="5982854at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="386" mass="43373" checksum="EC9D086EB70A90F7" modified="2020-12-02" version="1">MSDHDEPTTSMASQQVKVIQIPVNLPMPPQLAMTDIVRSCEKTAKQLESMKVEGEQVLAVGKEQYKEQRKRVEKRDEEVLIKCKFCNKSHPRDKFKCPAWGKTCSLCKRKNHFAVVCNAQRRPFSQRKSVSGVNDDTDSSEGEYIALVETKEEVGAVNSDQYTYKPSAPLMINKNLESFQLDSGATVNVLSKRTLAGCFRKPIEKKLVKTNTTLVMYNGSEVKPIGKTRIQVINPKNNKKYSVEFMVVEENCKSILGAKASQLMNLLAVNKENIFTTESNVKDVPKFITKQHLIEEYPAVFQGQGTLPGTFHLEIDESISPVQLPTRRIPLAVKDKLKVELNRLVDVNVIAPVDTRTTWISAIVVTVKKNGDIRLCIDPKPLNKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMS3</accession>
    <name>A0A6S7GMS3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A019876</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000949">
        <property type="protein sequence ID" value="CAB3985981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMS3"/>
    <dbReference type="OrthoDB" id="5975877at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3985981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="41287" checksum="6AB52982BC9CD101" modified="2020-12-02" version="1">MALGGLQSVRDALILARHEQCISDTEFVLLFEYNLSKPLFPYWKFEFFDLDSWDDEECKIELRFSKSDLALLQRLLGIPEKITCQQGSICSGIEGLCIFLKRLAYPCRYPDMAIRFGRNPTEICLIFNEVLDLVYDAHHHRLESWNQPFLSPELLQNCADAVHDKGAPLENCFGFIDGTVRPIARPKYYQRQMYNGHKRVHSIKFQSVVLPNGLIANLAGPYEGKRHDSTMLRESGLLASLRQVAFHNNQPLCLYGDPAYPLGIHLQAPFRNRELTPEMMEFNKAMSTVRVSVEWMFGNITKYFSFVDFKRQMKVNLSAIGKIYCVAALLQNAHTCLYENIVSQTFQLQSPTINEYFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GR59</accession>
    <name>A0A6S7GR59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001987">
        <property type="protein sequence ID" value="CAB3992136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GR59"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12721" checksum="F33E1CF9B4528E7E" modified="2020-12-02" version="1">MPIRRSLQLSNDRRRRDLHSENEENFIYDMPEDIISDFDDDEDDKEICGDREQLYVSLVDKLLQSKRQEIQCQEDKILTKVDDVRALEESFTAKANDSTRPACSKCHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2I0</accession>
    <name>A0A6S7H2I0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">L-threonine 3-dehydrogenase, mitochondrial</fullName>
            <ecNumber evidence="5">1.1.1.103</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A026854</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate, mediating L-threonine catabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-threonine + NAD(+) = (2S)-2-amino-3-oxobutanoate + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13161"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:78948"/>
            <dbReference type="EC" id="1.1.1.103"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid degradation; L-threonine degradation via oxydo-reductase pathway; glycine from L-threonine: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.103" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020002954">
        <property type="protein sequence ID" value="CAB3996826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2I0"/>
    <dbReference type="OrthoDB" id="10058185at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008743">
        <property type="term" value="F:L-threonine 3-dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006567">
        <property type="term" value="P:L-threonine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000077">
        <property type="entry name" value="L-threonine 3-dehydrogenase, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051225">
        <property type="entry name" value="NAD(P)_epim/dehydratase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42687">
        <property type="entry name" value="L-THREONINE 3-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42687:SF1">
        <property type="entry name" value="L-THREONINE 3-DEHYDROGENASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD-dependent epimerase/dehydratase" evidence="7">
        <location>
            <begin position="34"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00050613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00059023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00060557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00066604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00069940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3996826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="305" mass="34482" checksum="3D237123244786D4" modified="2020-12-02" version="1">MLKFGALARQVKFLKPVRQQYTAIRLFNNGTPRVLITGGLGQLGRGLAQIMRNKYGKENVILSDVVKAPEEECKKGPFIYADILDYKNLQSIVVNNQITWLVHFSALLSAIGELNVQEALKINVIGFHNIVELCRQYDLRLFCPSTIGAFGPETPKDPTPDVTLQRPTTIYGVSKVHMELLGEYYNYKYGLDFRSARYPGVISADTAPGGGTTDYAVHIYHEALRTGKYKIYLRPDSCMPMIYIDDCLRGTLELLECPEDKLKRRIYNIQGVSFTPEQLVDNVQQVLPDLKVEYEVDPLRQSIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4S7</accession>
    <name>A0A6S7H4S7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024499</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003164">
        <property type="protein sequence ID" value="CAB3997689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4S7"/>
    <dbReference type="OrthoDB" id="6781885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="510" mass="58567" checksum="5F6857E2FD4B4475" modified="2020-12-02" version="1">MGFHQLWILIQHKKMKSIVLCVAYRPPDCPVSCFVDDLMDNYSYALTLKKDIFVVGDLNCNLLKSGPESDALNELCSSLNLFQLIKEPTRVTLQSSSLIDVILTSNTSLVVESGVEKTHISDHFLVYSILKLKLPKKLPDYMVIRSFKNYSSEAFKNDLEQLIWQENPIDQGVNQRPDNFNQKFLSVLDMHAPIKTVKIKRRLCPFVDQEIVQLMKKRNALHKLARQTLQALDWDRYRSCRNQIKRKLRESERKFVYKRINDKNRNNNSLWKTVRECIPRSEKTRLTYSGNVVEVANKFNEYFFSVGAKAAEESKALITSYGLTSTHPEIPHKFSAEIDKFHFHPVSCDVIRKIVCSFPSNKSPGPDKVSVKVIKDALPYILQRLTDIVNCSLRESLFPSAWKLSEVIPLIKEGDHEIAKNNRPISLLLAASKICERVVLEQFTAYVEQKKCLSVHQSGNRKLHSTETLNLFISDKILKSMDDKEVVAVILLDLSKAFDSIDHVLLLKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H5X7</accession>
    <name>A0A6S7H5X7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A024049</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001962">
        <property type="protein sequence ID" value="CAB3992017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H5X7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5044206136" evidence="3">
        <location>
            <begin position="25"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="206"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="374"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="161"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3992017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="452" mass="50626" checksum="07435612E556C94E" modified="2020-12-02" version="1">MLESLNQFTKFLFILMLLARISVSQPKESKDAAKCATKCVNDMEKLAQLKQACKTMTLSKCIFDARTERIPKSGRRCFRVNAHRSSTQIECVQVLRNTTSQIKYCSTFVYFCIYQKDGAHSIQKRDITAEQNITNTPRANTTKFSPTAKNISLHRASALATSPNSAKTSTTTTQPTEQSTSHTSSTPNTAFMTLKDFFGHWKNACYVAVGGLVLILAIVVVLCKCRKRKNSGINTVEIRSVVSPTSTLGESEVESIKLTTELTHTVEVRSVSPTPTPVSNEVQLNSPIYCETDTFQFPSSQPRGETNETVEAEVSEPTDVENNSEDEYCCPENIEDEYETMNSVVPPQASGVYAYAYDHVNINASYVNTFPHQQQTSGVEDDDYEYPQNRRSSSDNEYRYAYDWLDPGARVAALSASEPVEDENYYENCQTLLQNNLEKENEIVTLEYVAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H740</accession>
    <name>A0A6S7H740_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003702">
        <property type="protein sequence ID" value="CAB3999906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H740"/>
    <dbReference type="OrthoDB" id="5984281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15220" checksum="C37F049ADBE81C78" modified="2020-12-02" version="1">MVIADTLSRLSPREGDEITGMQVKIHNLEFSPVELQQIREETAKGGTLQILTEQVMEGWPDSIKKTQQAIKPYWNNRDDISIQEGVLLLGSRIIVPKSLRQKILQEIHSGHQGMEKCKLCTKSCVYWPGIYKGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9G4</accession>
    <name>A0A6S7H9G4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine- kinase SPK-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003933">
        <property type="protein sequence ID" value="CAB4000816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9G4"/>
    <dbReference type="OrthoDB" id="5985221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27006:SF606">
        <property type="entry name" value="INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27006">
        <property type="entry name" value="PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17123" checksum="2029E723C8A4931F" modified="2020-12-02" version="1">MFFFGSLGKTSQPTRETVDTSGLPNYSYSSLLEKDEIGEGGFAVVFTAKLPDNGAKIVVKKLLASDNEARKSLVKEARLLSKLQHPNVVRFEGVCLDKYAVLLEYVYFDFTPIGNDGITVHSLANFLAVCEQSDCPCACIARYLFILPWTSRWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HE34</accession>
    <name>A0A6S7HE34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039083</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004827">
        <property type="protein sequence ID" value="CAB4004185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HE34"/>
    <dbReference type="OrthoDB" id="5981348at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="52946" checksum="68EBA5E67DB08D87" modified="2020-12-02" version="1">MRRHCTKLALFSILLVTFVFVCWNIFLSYDTTILPVLQENVNAHGNVLLNNFAARHDDTITSSIQRAQQNPISISLFIRMSTKREHLKVRFYCNMLKTVVLFWPPSLGKMVIVLDQESEGDHRFGAQLSNQTREHFSSYIFDVRYEPLPRDGTILDFPGQRKVPGYNRQLWSSFFIDLYTNDDIIAWLDTDSPFLLPVTMPTIMTNGKVRILGSTCTKDLVWVKSWAAITEKAIGFPMVADFMTYFPVYIYRDTFTRCREHILKRFNTDNFEEAFKKFYHTGTGYISPVCVIISYAWYFEKDRYNWNIQICGDLNTYNNRLPSGHKIQPEHVKDVLTQPQTAYHGPLNAGDFYAKAIPITFCLSQAAAGRKSAMCEKHPSSEINYLLNLFKADMHSIRKNNPHPCTGNFTKSCLDILERHIEKIGGEIKTNSRRLEWEDFEKVDTLARVAGVTCPAHPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHL9</accession>
    <name>A0A6S7HHL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004403">
        <property type="protein sequence ID" value="CAB4002630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHL9"/>
    <dbReference type="OrthoDB" id="5983181at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206:SF1">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206">
        <property type="entry name" value="PROTEIN CBG10425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="195"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="219"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="750" mass="87855" checksum="DA42D73C3D03A628" modified="2020-12-02" version="1">MGQLVDDIERTFDDQSTVFKLNLSFGFILFNNDIEEMQYHHHSSENNSRVFDTPFQIRNREDLAQVREAMQKIDIHEWARQQRPNSKWVVMDFTNATFYVTKLRDHPIGRSVSPMLENTTIVSLDCNEQTGLPYEDKLCLFRCLALHKGCHPHNLERDTQHFYEQYSQNDDFAPTFLATTNPSVSSRLAVQVSEEEGRGSEAREEISDSDGREANDAEVSGDEVNEESQESEPEKAHPLEKLIEKLTLYLMELPVIGFNSGKYDINAAKNPFFSYLVKHKQVKFVIKRNNNHMCLKTEHLKFLDITNYLAPGFNYDQFLKAFECSQTKGHFPYEWVDSIDKLNSPILPPPEALHSTLTNTDITTDQYEYCQRIWEEEGMTSFRDFLVWNNNLDVVPFLEAIDKMSDFWQERCIDIFKDGVSVLGLTMKYLFSNVPGAYFSLFSEKDKDAYYTMKSNNVGGPSIIFNMYHEKGKTSIREGEMRAKEREPKPCKKVVGYDANALYLWAIMQNMPTGQYTRRFEEDGFKTRWSGKMAIEWLEWEAYQRKIQIKHEYNSTEKRIGPRRLPVDGFHAESQTVFQFHGCYWHGHDCQLNQGKEVNEKRDKPMKELLEETERNSANIRKQGYNLVECWECEWRNMRKRNSAQQRFIATHLRRPLDKVKTTTTQSIVNAVKNNKLFGCVQCDIYVPESLREHFKEMCPIFKNIEIRREDIGEFMRSYDEENNVMRQPRRSLIGSMKGDKILLATPLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HK79</accession>
    <name>A0A6S7HK79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055303</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005255">
        <property type="protein sequence ID" value="CAB4005634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HK79"/>
    <dbReference type="OrthoDB" id="6407116at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018379">
        <property type="entry name" value="BEN_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10523">
        <property type="entry name" value="BEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51457">
        <property type="entry name" value="BEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12112" checksum="81273ECD624F7978" modified="2020-12-02" version="1">MPLSQPPPPSDLVSNDELAAIKLKSSGPTAFASVLLRNLFTLDEMKGQNCHGLAKKGKLNKEKLDKIQEYVYKYYPDTPEQLSRTWACCTQTIDSYIRNKQHKAKNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKA3</accession>
    <name>A0A6S7HKA3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Capsule synthesis protein CapA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044576</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004746">
        <property type="protein sequence ID" value="CAB4003863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HKA3"/>
    <dbReference type="OrthoDB" id="5947431at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019079">
        <property type="entry name" value="Capsule_synth_CapA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052169">
        <property type="entry name" value="CW_Biosynth-Accessory"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33393">
        <property type="entry name" value="POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33393:SF11">
        <property type="entry name" value="POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09587">
        <property type="entry name" value="PGA_cap"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Capsule synthesis protein CapA" evidence="2">
        <location>
            <begin position="43"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Capsule synthesis protein CapA" evidence="2">
        <location>
            <begin position="134"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29248" checksum="775B96843579142C" modified="2020-12-02" version="1" fragment="single">MTRILELVKVRNLSRRGQHMKTGNVTINFYSTQNIPHDVSISIIFVGDISFGRCVRKYVDHGYNNYNDTMVKVAGIIRDADIAVGNLESPFVTKAMQKDRFSGRKRYFLHADHRSATALQLVQNTLQIDDNISLPCDSHTDSTFRFAGFDIMSIANNHLNDYGEKPVNFTRNILSNVGIETIGFNFGSYDSPQQPASYRYSSRESTSYLEFTRCYSSYILSHFRTEQALICNVSTIHDLDSVTILGDSMLKRLDVNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQ70</accession>
    <name>A0A6S7HQ70_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030957</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005543">
        <property type="protein sequence ID" value="CAB4006569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQ70"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19962" checksum="1168BA8BE3D392C6" modified="2020-12-02" version="1">MAGFDCCSIFNYLIIYRHKPIALNESSFELNGQASSANGQSGEQEEPLSSEKKKSVEFLSNQYDQVLKELDQIKAEIKEVSKKYTEISNVIAAIEDYSFNYNVKIVGMPVVSEYEKADETVEICIHLFTALGVKDISPYDIDIAHRVPTRRNFPNKPNPIICKFTRRISKEKVMAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HST2</accession>
    <name>A0A6S7HST2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Large ribosomal subunit protein bL21m</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A010604</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005803">
        <property type="protein sequence ID" value="CAB4007457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HST2"/>
    <dbReference type="OrthoDB" id="5994at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005762">
        <property type="term" value="C:mitochondrial large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01363">
        <property type="entry name" value="Ribosomal_bL21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028909">
        <property type="entry name" value="bL21-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036164">
        <property type="entry name" value="bL21-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001787">
        <property type="entry name" value="Ribosomal_bL21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018258">
        <property type="entry name" value="Ribosomal_bL21_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00061">
        <property type="entry name" value="L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349">
        <property type="entry name" value="50S RIBOSOMAL PROTEIN L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349:SF0">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN BL21M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00829">
        <property type="entry name" value="Ribosomal_L21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141091">
        <property type="entry name" value="L21p-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01169">
        <property type="entry name" value="RIBOSOMAL_L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00044129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4007457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="26927" checksum="EE4B13C46AA916A9" modified="2020-12-02" version="1">MAARTARSFFQNGTKSIAVLRKISGKTNVQNYLKSLHRTSSSSLQGNPALSSILQNLAKRSSPSFVNHIRRLQDLAVNIDNAVCGLSTGQENSQDISLLEQCSDDDDDQFRKRGDDILSKVKDEVKFAQHNGNIFAVVYIGGSQFKIVVNDIIMVNKLPAQVGSKIKLEKVLLVGGENFTIVGQPLVNRNSVDVQATMVEHTKAEKIIVFKKKRRKGYKRTQGHRQALSVLRINKIVVNPTSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTP4</accession>
    <name>A0A6S7HTP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054742</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003381">
        <property type="protein sequence ID" value="CAB3998540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTP4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29162" checksum="6936AFAE2D8B0803" modified="2020-12-02" version="1">MYSFFVFYFILLYFASTKPPFTSAGSSVGPVQAFKIKDCRRCPVGYEESIPCQCEIAKENDHNLSKLFAQQTTKLEAQAFTKMDSDLKMYSFFVFCFILYFASKKLPFTSAGSSVGPVQAFKIEDCRRCPLDYEVSISCQSEMAILCEIAKENDHNLSKLFAQQTTKMDSDLKMYNTEQLFTSAASDLLYLDLEVLDYQEDSRSKAFQGEIGVPSEIVTTVGIPYEIRVFKLCFGNVYDLSSGRSVKHFKVKTGEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2P6</accession>
    <name>A0A6S7I2P6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Helitron helicase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007576">
        <property type="protein sequence ID" value="CAB4012614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2P6"/>
    <dbReference type="OrthoDB" id="2372507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="7"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="601" mass="69391" checksum="029CB36E93F44C9D" modified="2020-12-02" version="1">MIHRKRILQQSGIFIKQNPDEAHLTIDELREMAASDNSTLLMSKVSRYIGNIAGTNAYWNKVREELKAIITNVGAPTLFFTFSSADMHWPELHALFGANTGNATSEARRQNVINSPHIVDWFFTQRLEKFVKHWLYDTLGAKWHWFRYEYQGRGSIHCHDTAKLHNGPGLCQLTQTALKGFLAQKFKNENDCSGTTELDQDIEAGQKAAAQYDTTVNPNPPDEDMWIRPEVHSCQKSHHDIPEHEKQSDYVDLLNMVQRHTRCSTSYCLRKKSNETELKCRFHFPFDICPKTKLEFEKIHTSGWRANCDIQVVIDHYACVEYLTKYAAKGEPRSPILKQAFNSIVQNVDSNTDPHRVIKKVVMKSLGERDYAAQETMHYLLSLKLHSSSFKVMSVSLNGSRRVRDTASNDEGESCTDYSLLDVYANREQYDSSQNIINMNFVQFATTYKVVNNELTKLPENIIPRIFATYSPNPKGPNFGLYCKYQLLRLGTLQAVIESQEAEDEPSEGQETTREEWMILSDLNTPFDNSEQTPESTYDWQLDRANYSEQQIQEMPTWIKTNKEEYTVDEQYDVVDIDSFSEMQKLAYDIVKSHFDDTSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5E4</accession>
    <name>A0A6S7I5E4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A021510</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004107">
        <property type="protein sequence ID" value="CAB4001522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5E4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11812" checksum="2694DFB2BA4A5959" modified="2020-12-02" version="1">MEDKPEQIQAQVTSEKKKDPKRVAAGKRLAAISRIAKERKKKLAEPKESQSSDSIITYVGVVIALISLVLAFKSHQRETGEPEHKHIPETVEVTRKADAPKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGF1</accession>
    <name>A0A6S7IGF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Next to BRCA1 gene 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A049770</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasmic vesicle</location>
            <location evidence="1">Autophagosome</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008700">
        <property type="protein sequence ID" value="CAB4015400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGF1"/>
    <dbReference type="OrthoDB" id="2122982at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005776">
        <property type="term" value="C:autophagosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000407">
        <property type="term" value="C:phagophore assembly site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016236">
        <property type="term" value="P:macroautophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14947">
        <property type="entry name" value="NBR1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd14319">
        <property type="entry name" value="UBA_NBR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.10:FF:000033">
        <property type="entry name" value="Next to BRCA1 gene 1 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032350">
        <property type="entry name" value="Nbr1_FW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015940">
        <property type="entry name" value="UBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056893">
        <property type="entry name" value="UBA_Nbr1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20930:SF2">
        <property type="entry name" value="NEXT TO BRCA1 GENE 1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20930">
        <property type="entry name" value="OVARIAN CARCINOMA ANTIGEN CA125-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16158">
        <property type="entry name" value="N_BRCA1_IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24932">
        <property type="entry name" value="UBA_NBR1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50030">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="80"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="254"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="400"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="80"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="100"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="254"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="403"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="432"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="455"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="719" mass="78915" checksum="2DCB48D1D6870364" modified="2020-12-02" version="1">MCVNCCTILNTRNCPDFDLCEECEVIEDIHDPSHVFLKLRYPGIGIGRRHGVMIPFLKDIIYKSKDVELAEEQDKRMKEVRKKLKQSAKKKREEQVGKKKADKKMKKLQKPGGSISNDNLACGGYDLLFVGDGSYPDGTEVTPGFEFTKCWKIRNTGTVAWNKEPKLMYLYGGLRCMLSTAVELPHLEPGDEGTVMATFIAPPDIGEYISVWRATSSSMCGGINFGSKIWCKIKVVREEVPSDNDEIFVDANETSVAPMQESTHASVSEPDAEMLNEDSSPTTADPIFHAYTTQQSQEDEIGAAGVDNSENQATSSDVSLLECNELEWDTCVVDDDAPVIVNEDDEDYIDVISNASSDDFCVVPLPACFNPDIPLDFGPGPSVEAPMPLAQELETDVHVGSPADQQGSSTDGQNPTGEFEEEQSEESLPTAEPEEDETVDPEDDDIRYIPITSDRPAEDSRDLPEQTTSVPINIELRNAEMSDQRPLTMPGFDARSTISEPVAPQTASFERTPLIYGRLPASPPGRAVPVVQIQITESGVGRADSGPGSYEVEVATGGQGEWQAVRTQPPDVVHQISEEEETVTIQPRGATGASPQSTAQFASTFVTGTLKRALGSVTDTVTSFMTGKDTPSTVVYTPPNGSSDNVHVVHVVLPDITQPVAETRENEPDTRVLIEQLREMGFCDRQLNERLLRKHNMDVNKVVTELIHVNDNDWSAARH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IL47</accession>
    <name>A0A6S7IL47_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Apple domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074764</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009844">
        <property type="protein sequence ID" value="CAB4018083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IL47"/>
    <dbReference type="OrthoDB" id="10637433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Apple" evidence="1">
        <location>
            <begin position="10"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="10226" checksum="9617B0954FAE251A" modified="2020-12-02" version="1">MANVRSYRLDVESKVIKRVHAKSGQDCIMECAVLEEEPCSSANYNKTATFRGQENCELLETVDSEEYAKSLKRKLNFDHYIILSLETCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN66</accession>
    <name>A0A6S7IN66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029470</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010337">
        <property type="protein sequence ID" value="CAB4019187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN66"/>
    <dbReference type="OrthoDB" id="10062389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="194" mass="21928" checksum="9309DFB8FB640993" modified="2020-12-02" version="1">MEGKYDLIYLDFQKAFDKVAHERLLLKLESYGITGQVHDIIRNFLTGRSMAVRVGDHISSWEPVTSGVPQGSVLGPLLFILFINDMPQVTKFNTVLFADDSKVIGNAYYPEDIQTDIDCLSRWSEIWQMKFNVEKCGVLHIGESNPQHGYTLDGIQLKSVQKEKDLGVTWSVGKSLFDDHIREGIGKAKRRLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISG6</accession>
    <name>A0A6S7ISG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010674">
        <property type="protein sequence ID" value="CAB4019890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISG6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13058" checksum="B19C7EAA353FD27C" modified="2020-12-02" version="1" fragment="single">HYQRQERFAPPEPSPEPSPERRREERRRAERRRAERRRAEQFQVQARSPPPRSPSPPPRSPSPPPSPSPPSSPSPPPSPSPPSSPPSPGERPIQSDEVSSTTQARPVEVIIVSDDDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVS0</accession>
    <name>A0A6S7IVS0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cartilage oligomeric matrix</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A083661</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012520">
        <property type="protein sequence ID" value="CAB4023475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVS0"/>
    <dbReference type="OrthoDB" id="14563at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.1080.10:FF:000001">
        <property type="entry name" value="Thrombospondin 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1080.10">
        <property type="entry name" value="TSP type-3 repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003367">
        <property type="entry name" value="Thrombospondin_3-like_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017897">
        <property type="entry name" value="Thrombospondin_3_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028974">
        <property type="entry name" value="TSP_type-3_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10199">
        <property type="entry name" value="THROMBOSPONDIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02412">
        <property type="entry name" value="TSP_3"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103647">
        <property type="entry name" value="TSP type-3 repeat"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51234">
        <property type="entry name" value="TSP3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0106">Calcium</keyword>
    <keyword evidence="3 4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5044005973" evidence="7">
        <location>
            <begin position="22"/>
            <end position="628"/>
        </location>
    </feature>
    <feature type="repeat" description="TSP type-3" evidence="5">
        <location>
            <begin position="401"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="repeat" description="TSP type-3" evidence="5">
        <location>
            <begin position="556"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="517"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="553"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="518"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="558"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="335"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4023475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="628" mass="69469" checksum="995242B0825AE931" modified="2020-12-02" version="1" fragment="single">MDFGPQLGVLLLCISAAFLRANEIDFLKDVPQDPSKGLQKNNGEMVYCYQRKNGRTNGQLRTTSHVKDHFVGEMIHGSFSTTAQIKLKELRGTAQFVLFSVQRTTDRKKLFIWWLNAVRKQVGITYTGSQGRTSLLYFSKVPFGVTTWFQLTLKFRGFNRNRPMVSLYVNDMKVEEKTLSRNFRNAIVGTNRNNIVISLADMWGLTTTSSMPKICMRRLRVFTDTDVEDVVNQCPQPASMTEQELQHLEQRIAVRVTATCDQAISKMMQQMQLMLNTCGVCKRHPNLFTRPPPNLFTRPPPNGTGPIIGNPVETKPKEALKSLVANPCPPGLNACHPRGTCTPNIMSPGNFCKCNHGFAGNGYSCGKDSDMDGFPDEDLPNCKEKYCRKDNCIDKPNSGQENVDGDELGNACDEDQDNDGILNKKDNCALHYNPSQQDTDGDRIGDACDNCLRTRNRDQKDTNNNGTGDACSRDIDGDDIIENDNCPYKQNSNQLDSDGDGVGDACDNCPLNSNVGQEDVDQDLVGDECDSNVDRDTDGVNDNYDNCVSVINPGQLDTDGDGIGDECDPDDDNDGVADETDNCRLTANADQEVDPLSPKYGLACKDDYDGDSIANNLDSCPENKDYSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZ49</accession>
    <name>A0A6S7IZ49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006862">
        <property type="protein sequence ID" value="CAB4010661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IZ49"/>
    <dbReference type="OrthoDB" id="8939918at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="37228" checksum="E5EA921A1960F967" modified="2020-12-02" version="1" fragment="single">VPVPGSGSYHLSCRKIKDIDRELFRRDLRASRLCQNPPESIVDLVTCYNTTLSGLLDKHAPLKEKTITVRPRVPWFNVMVKEAKRICWKHERIWRKTGSELDRERFAKSRNRANHVMEQLSLTCTETALLPMENCLRDIRNWMITDRLMINDEKTEFMLIGTKAQLAKVKNITLTIGESVISPSEEPIKNLGAWFDRTFNLNHHINKTCRSAFYHLHNIRRIRKYLSRESTEKLVHAFVTSHLDYCNGLLYGLPNNAIAKLQRVQNAAARILYRAPQFSHITPLLYELHWLPVKYRIEYKIITLTFKFYARVSPETLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J0V9</accession>
    <name>A0A6S7J0V9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039649</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012765">
        <property type="protein sequence ID" value="CAB4023958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J0V9"/>
    <dbReference type="OrthoDB" id="411615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19967" checksum="CBDDDD9AEB7C5B1F" modified="2020-12-02" version="1">MIRSPAYLVFYPDSNKVERVRCVKFFNESNHESKVNPDEQEGEFLPSKVSVPIANESVISTQGDESANGIETVHDEVRYPSRTRTKPTYLNEYVTGKVVDDAATCAVDYCYRTHDIPTSYSQAVHSPERNKWEKAMDDEIEALEGNETFELVPPPKGCEVVGVKWVYTVKTGPDKAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1V7</accession>
    <name>A0A6S7J1V7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acylamino-acid-releasing enzyme-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012667">
        <property type="protein sequence ID" value="CAB4023761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1V7"/>
    <dbReference type="OrthoDB" id="6021732at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82171">
        <property type="entry name" value="DPP6 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="81" mass="8967" checksum="50679CCE57422B66" modified="2020-12-02" version="1" fragment="single">AIWASDGNGVIFCGRDHEPYRLGLKYCHNRKSGIYYLSLDGKSCEMLSDGTESVSFPRLSPDGNKLVCHCIKIKSLDVITS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBF1</accession>
    <name>A0A6S7JBF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">G- coupled receptor Mth2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A011170</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016189">
        <property type="protein sequence ID" value="CAB4029466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBF1"/>
    <dbReference type="OrthoDB" id="5959886at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15039">
        <property type="entry name" value="7tmB3_Methuselah-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4029466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="905" mass="102497" checksum="759E391EC6C819C1" modified="2020-12-02" version="1">MDLPDVILSYLRLLLLLTCIFINLGSTQANESISTFKRAEKSVWLDHERVRRNSNYQGCTGNKMGFSLGNKCFYDHACFEIFSDCCSDYVSKCGRQESKETIKQSASMWKCIEISGMPLSVYCDFAGATGIWMISKCPANTSFVKLRGKCENAPSEFSYPVEDFIPVMGANSLMYRNKHCALCNGLVNYTAWNIRVTAYVIPPEDFDLDSRLKFILANGGYINSVPPGEGQPRRYCYGRNYIDNCSSTNDTSYKACVEGPIEVVTSFDFAYFKNTECAICNGYPNLYRWATGMKCSPPVESDGFSIVFKLRNAGGPKTTVVSKSCPDGSVYDTTLKFCRVGYYIISSSRQLTNEFLILLWLKQRNDSREISWKLDDDFKSALSLAISSQFSLLLNQISTITFHQQYRANDYFVATFRLTLTAFQSLIMANQHKNDFNITRENTAFFGLLNFTGNFTVDWEEYSFSVLNVISKQLSCYGKKKFQSREYKIDRENGSVVVSKTGEVFLLGDYTLVEEIGGNIALCRKLILSDCKEGAYVPLTPDEYVIFPNLTVYHKATNSTFKFGEYLMSEKLNKRNISNTTQNSWNSTISVCLPFKTTFTKTETKYNTSYGLRILTIIGFSVSTLCHILLLITYGLFKELRAVSGLNLMNLSFSMCLSQVIWLIRTADFQGTIFCEILAILEHYLLHVSFLAMSIISHHTCKVLSQPFVGRTANTSWRRFIKYSSFLWLTPAVFVAVCVALDKTEVFLVDYGMNCWLGTANAKLYLFLSPLAVLLLYNIYKFIQTAVSLSRHAKDREILQRKEGKQNLLICTKLATLVGFPWLFAFIGVLFPDVEAFDYLFVVFVCLQGLYVGMAFLFNKKTLKLYKGRWNVGSRGNTPSHTGTKQSFELQALQSSSTDPKTISV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCU2</accession>
    <name>A0A6S7JCU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037320</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015649">
        <property type="protein sequence ID" value="CAB4028687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCU2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="54789" checksum="9F1E452D864F50CD" modified="2020-12-02" version="1">MSVLNGKCDYWYRKKSMIKQHLALGDKENMLHYNASEFAKELKKKQKRVDHVTQNLVRVALGVCEMNSAGCHFETAVANHIATGSDLGDIGHSRKLFPDLLKASEIWLDKEVEKFLCRPLKSTGIPPHYYVTADKATLNRITNQAIVIVTMVDSCRKAILVKAPEVYSSRSGDGDAKENDAYVDEVSGSHAEDLANGIVECIKDQYCADVLQGWQGTSCDGPYQAKYFEKSLNSALARTDDTFDVVVWDPPPWIDLAMKDVKDGKISEDASSYLNRIIKRTMKLHTKFNRGKMFQQVKSVANHNAYGKDVKFKVLSGTCGTRFSTSQYSEFLKLTESLPLYIDTFRKYGYDEDDEYEIAGKDFVVDRLALTDLMRPAMVDLLVSLQGLYVPSWKICLWWPKVRQRIQKCIPISFDSPDLPLTSNNIRDIRKGKFKGTKVVPGWLKVEKNVSEEVSDGKKTTTTKWRARDLKDCRVDLEVFVPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRB5</accession>
    <name>A0A6S7JRB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A039670</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019803">
        <property type="protein sequence ID" value="CAB4034087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRB5"/>
    <dbReference type="OrthoDB" id="10043005at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF46">
        <property type="entry name" value="INTELECTIN-1A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4034087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="399" mass="44522" checksum="EA30A1F1B8AF8457" modified="2020-12-02" version="1">MNFVAILLLVLCWIYICPVAVDITDVDDYDPGSCDKSNALQVYSVNDRKNDKKLWICSKENGNYLWKPFKGDAYLGEFLYPGYDCSDILDHELDAQDGFYWITLGGATKRKVWCDMKTNGGGYMLVARKHNAIMWDVPSKDQPVEPDSSETYWTSQLGDAPILDFRIQLSTSDSFDNTKAHWSFRLKNTRKLANLMITDRGCDALSPGVGDIAYVNDLMAEKIATTNFKCSVFGPNTASFIKVGWSMMNQCLKKPCGGSGYLHFPGQKPIKFEENGVFSYSVSTTKSGIYNNATAYVGCLHGKCCGCFGPAGGTANYCDTKCNAINGGTIIGAKTVYAWVWVRSRLPKRVWNRCMEYKSQDENGQFQWYTLIGDSAIPEKGRCSNADELRLNSGVRNTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTM6</accession>
    <name>A0A6S7JTM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007955">
        <property type="protein sequence ID" value="CAB4013628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTM6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="9290" checksum="6980121A9CF1D89A" modified="2020-12-02" version="1" fragment="single">ACLHYAPNDSHSHIAEQVIRSLNEATGDGRSISIPNVPIFEGMNQEQVCSLTQDEFNVLESKCQEDIAKQCAQDVMRHYEGKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVG8</accession>
    <name>A0A6S7JVG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036910</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010784">
        <property type="protein sequence ID" value="CAB4020101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVG8"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="923"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="923" mass="104626" checksum="D61117BDE5C10D1F" modified="2020-12-02" version="1" fragment="single">MSNHRYGLQFNITNSNLHLLLCILLAGDIATNPGPVCNSSSLGLKVLYFNARSLKALVHPTGDNSVKICKISLLQQLTYSGNYDVVCVCETWLNNSILSSEILPNYGSVFRCDRVGRIGGGVLVAVKTGIQVTRRHDLEPENTEIVVIEMLKSNSKPVVLYTFYRPPNSTPDVLQSLNNSLQRNSESSRVVVIGDFNLPSVKWSSDQHTPINIGSSPENEAFCEIVEDNFLQQFILSPTHIAGNILDLLLCNTPNIIGDVSLSHPESCGFPTDHYIVELEIHLKFKRATPVKRQVFDYKNGNFDGLRNFLTQFPISIVPTNNIDDCWQQWKYAFLTAVKRYVPMKTVKDTNTPPWVDKEVRNLISRKYKALKKYRMNKTITRKSKLRALTQRIKYLIRCKHREYLSKIENSFGDNPKLFWSYHKAILHHRKRQNNEITYNGVTAKTAKEKATLFNSYFSSVFHPPSTRSAPSDYPDSLESEGQISEITLDVDEVSQCLSYLDTSKATGPDGIPSRLLQACSLEIAPSICELFNHSLHSGRIPSEWKSANVTPVHKKERIEPAENYRPISLLPILGKVLERCVCLRFYDHISHLITESQHGFLRQRSCVTQLLSVLHAIGQSLDKNIQTDIVYLDFAKAFDSVDHQILLQKLKSYGVRGQLYKWFADYLNGRCQRVVIDGAASHWAPVTSGVPQGSILGPVLFVLFINDLPDILPYEKMAALYADDTKVYNSIRSIADCEKVQQALTNLKCWSRDNNLGFNSSKCKVLTITRKKSPLTYAYQMNSKAVSRVEKEKDLAVCVNNNLSWNDHIFTITAKGNKMLGLLKRTCPLLTNTTVRRTLYLTLVRSQLSYATEVWSPHTTKLISKVESVQRIATGWILKSKRGEISYKQRLTTLNLLPLCYEREITDLVFFFKALHGNIDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYR4</accession>
    <name>A0A6S7JYR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023839">
        <property type="protein sequence ID" value="CAB4038125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYR4"/>
    <dbReference type="OrthoDB" id="10473615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="34809" checksum="81E7CBD0D71BE3C9" modified="2020-12-02" version="1">MNVEDKKQERSKAKMAVTVAARRLIGAYNRDCEYDILKDSMFELEKVFDDFCVINEEYELIVSDEKYAEHRVVNGEDIRTSRDNVKRCYQEARSVFVNVKATIEQKARQQSAGPVKVALKNDICRIHELITVVDESFKLENVNMAALQLDKNDLQSILNIICDNMAKLGSIETQEQVNLIQEDVDAIIRAVYNCIRKINLFLHEQQAFVKSLHIETATLPSETNTPPENINTVFLPEINTNIPLRTLRPSTPCLPPEINTNTPLRTLRPSTPCLPPEINTNTPLRTLRPSTPCLPPEINTNTPLRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1F1</accession>
    <name>A0A6S7K1F1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022840">
        <property type="protein sequence ID" value="CAB4037211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1F1"/>
    <dbReference type="OrthoDB" id="5985034at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="141"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23526" checksum="D87046CC577CE93F" modified="2020-12-02" version="1">MRTVKKIVKIALTQQKPWREELTNFLRNFRATPHSATGKAPATAFFNRQLRTKLPDVHTNARDPAEIQETDQKAKRKMKKYADSKAYVKPSRVRPGETVVLKRDPSHRKSETPYEPKPYKVISCKGSMVTATRGEKTVTRNSSFFKLVRQQDEPTEGDSTDGEHDNLEDTDGEPDNTAQAEEQQQEPHRYPQRVRAPPRHLADYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K252</accession>
    <name>A0A6S7K252_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070453</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008773">
        <property type="protein sequence ID" value="CAB4015588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K252"/>
    <dbReference type="OrthoDB" id="498125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="35084" checksum="D5624D3FEED9FB48" modified="2020-12-02" version="1">MECLHGKSESTSTTSNGSFWFCGQNPSCHFFCSEEDSYRFEKAIIAWKSAGAHQPQCHEHHKLARMRIVKDPMKEDYGRPFFVCSHRENPCSFWQWGDVAETVRPNCRHGFPCCMRKVKKEGLNKDRTFFCCPNGKDNSFSYSEWTPSEEDIPICPCFEVNFSMPPSYNTIKRTGERFTSRCGDRMKAFKEHLENKSKDNLTNTFENMKFHLLVLAAVFSMDIICDELKQNNVDIDKETLSYHINAILNKNHVLYEAARVQSLTVNLSRFYKEIKVTNFGRFIAYSALVYRASDSLNEETIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4I7</accession>
    <name>A0A6S7K4I7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063716</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023206">
        <property type="protein sequence ID" value="CAB4037544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4I7"/>
    <dbReference type="OrthoDB" id="5988638at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012934">
        <property type="entry name" value="Znf_AD"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51915">
        <property type="entry name" value="ZAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="350" mass="39181" checksum="EA0536FB924FC801" modified="2020-12-02" version="1">MSQTPKKKISKIGRPPKRESVNDYCRICKCRFKLAKCASLKIFERNERDGFSLIILGDMCAKSGIDIVKNSDFSDRVCVSCARKIRDCCSLYNEICTSINKPCVQFVETEGEARFKRQIPTDSEHSPTVRKVVKHVSAKNNETGESSGDHKKVKKLLFVTEETSVDKHNIACESTVSSLLNIDINLLNNTMEKKTNDVSVMIKHPNGDVIMRHVKDPNARSIVRNIALCNWKSAAFSIMKCEGLIDQLLNALNKKIANEFKTFSKLDSILKGRTPEELVAFSNKLLLEEVRVHIPFWNACVKGSVGVSVDKKAEKQCNAIALATSVLARCRNAEMSAIAYRISTIFFIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K5X3</accession>
    <name>A0A6S7K5X3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein LOC110053001</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A068539</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024757">
        <property type="protein sequence ID" value="CAB4038928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K5X3"/>
    <dbReference type="OrthoDB" id="5955768at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046338">
        <property type="entry name" value="GAIN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000203">
        <property type="entry name" value="GPS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01825">
        <property type="entry name" value="GPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="313"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4038928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="381" mass="41331" checksum="10591118DADBDF94" modified="2020-12-02" version="1" fragment="single">GDDDGSGDDDGSGDDDGSGDDDGSGDDGDSGDDDGSFTVHSNSKFFIQFKDDLLIQHDPAEKNITRLSDVASIRLYNPQTLAELSVSGLANPVILRFPIDDAEMYENYTKECRIWHEDSKEWQMSGCSASTSNNSIVECSCTKLGYIAIFLGEKQRPTTAPPTTPEPSHARTTVAQEEAQMVEFAFDANYSQVISGNTTKPVFISHLRPFLAKLLNISQARITNIDIRSGSIIVTFTILPSNNTNEASVNSTILHLEQLVKTNNVNLTLPGSNDTLRVNPSSFKIIVVSPTTRASTLKPDDDDDDDGLSTTEIVIIIVVCVIVLIAVIAGLVYYFVRVKPARAGKISPHNSSMQLNEQQNNNQVARTGVDNNAVVTDEKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6R7</accession>
    <name>A0A6S7K6R7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042774</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027735">
        <property type="protein sequence ID" value="CAB4041085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6R7"/>
    <dbReference type="OrthoDB" id="6016580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="25247" checksum="F742C9B800A496FB" modified="2020-12-02" version="1">MAKSTGLDKISTKLIKQAGDTITESLLEVFNISLRTGIFPDDWKFAKVTPIYKAENKTLCENYRPISVISNIAKIFEKLVCRQLNTFLDNNNIIVKNQSGFRRNHSTETSLLQSTEMWLKSMDQGQINGLIFLDLKKAFDTIDHQILLSKLQAYGIRDHTLKRFQSYLDQRKQICMLNDCKSDIETIRITSHSFRSDRRITATRPVPTRSRRRYEGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBS3</accession>
    <name>A0A6S7KBS3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002175</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029701">
        <property type="protein sequence ID" value="CAB4042217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBS3"/>
    <dbReference type="OrthoDB" id="6152807at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17474" checksum="44979880C416A2D1" modified="2020-12-02" version="1" fragment="single">MPPFGLSDHNTIISSPKERAKDLISNGTTFKRNINPSSKRALGRYLNSIDWPQIIPSTNDCDQLSNMFQNIVLTGVNILMPMTRSKKCPVDAPWITNHFKSLIIERQKAFPTYGPDSSSFKSLRNQVNRERKICKSNYYKLRVHQMKQTDSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC68</accession>
    <name>A0A6S7KC68_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055667</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029976">
        <property type="protein sequence ID" value="CAB4042367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC68"/>
    <dbReference type="OrthoDB" id="6741510at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15266" checksum="7AAD24C237FE503B" modified="2020-12-02" version="1" fragment="single">MLCEPISPAERLPLTIRFLASGSSQTSMSFTYRVGRTTVSNIIRETCCALWEALLRNISKHFVHMMHGRTYQKNSRNCGTLCNCHQYADDTTIYNSVKPKDFQLGVEQMNNSLTNLTRWSDESKLALNNNKTKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCB8</accession>
    <name>A0A6S7KCB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032296</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028268">
        <property type="protein sequence ID" value="CAB4041408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCB8"/>
    <dbReference type="OrthoDB" id="10029313at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="31005" checksum="52E8051AB88B7170" modified="2020-12-02" version="1" fragment="single">MATRRATRTQEEENPDIKDILTCISKKLDNIGESLQQIVDHQHKEERNTSECFEQFNRSMSTISNEIGNALDKTNHINMENQVKNQRQKISRIWNNHLNKRKQLYWHSLNSENTALIYETWINKEKKILPRKFLIKSIANEDINETRIRQNSAVENFRNELALLNVRAERHKSKCKQTEEEMKKFLEDRFTGHTLTELKNLWHEDVTHEESKSLKKWESKQIWLEKYEAEFKHESFLKPPRKYNESKPTGDSRQQDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFG6</accession>
    <name>A0A6S7KFG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019690</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030639">
        <property type="protein sequence ID" value="CAB4042698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFG6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="62" mass="7291" checksum="5687C9A4D9AA47E1" modified="2020-12-02" version="1" fragment="single">MANKNVKITSTVVSDLPQSLPQQCKKHHLHRWRSHWNAEKISSGEFMDGELIKVFYSENVFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIF7</accession>
    <name>A0A6S7KIF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger GIS2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031434</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029064">
        <property type="protein sequence ID" value="CAB4041870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIF7"/>
    <dbReference type="OrthoDB" id="5986850at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="19110" checksum="5923E222E2B0812E" modified="2020-12-02" version="1" fragment="single">PLPDNFAVSEGRLKSLKGRLVSKGILNDYDKIFKDYEQNGIIEQVPADEVAGEVGQVHYLPHRPVIREDKETTKIRAVFDASCKVNGPSLNECLYSGPNLLAKIFDILIRFRLNRIAILADIKQAFLNIAISSEHRNYLHFLWFDVESGEMRVYKFLRLVFGLTSSPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KL94</accession>
    <name>A0A6S7KL94_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GTP-binding A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052199</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032832">
        <property type="protein sequence ID" value="CAB4043654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KL94"/>
    <dbReference type="OrthoDB" id="5985928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030379">
        <property type="entry name" value="G_SEPTIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32046">
        <property type="entry name" value="G DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32046:SF11">
        <property type="entry name" value="IMMUNE-ASSOCIATED NUCLEOTIDE-BINDING PROTEIN 10-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00735">
        <property type="entry name" value="Septin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Septin-type G" evidence="2">
        <location>
            <begin position="54"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4043654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="334" mass="37127" checksum="A5C0AAEA6FDA983D" modified="2020-12-02" version="1" fragment="single">MPIMKPLPRDKKTLFVEAHSLGLIGPNPDLQKPRAKLVDYINSSGMTGRSMNHVSILLVGESGVGKSCTINHLLGTKDEIAKTNDSKSETRSTQEFIVYGSEPRYEVKDLPLGVVDTPGFGDTDGSYQDACNFFSIQEFFRTHPKLTGHYPNLIFLVVNATDTRLKGENSHLTKSLRCVKLLKLVDPINPNVVAVMTHACGSPSRNVDIWCDNMEKIKTTVKTIIFEALKVTAPVIVMENLYGEKGYDLEEVGEYTRLPNGVLQPKNLYDACADVLKENNDNLGLIILNSIFAPSTKVPRPKDGHKIEAKNAKIDKLDDEEIKFVDVLERRSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LEP5</accession>
    <name>A0A6S7LEP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013144</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017291">
        <property type="protein sequence ID" value="CAB4031009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LEP5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="100"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="9"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4031009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="24133" checksum="07317D7B7DF4050D" modified="2020-12-02" version="1">MYFCYDTQLKRLERELHDEQDKTKQLESELTVAETKILQLEQALNLHELEQKSKETDNGLCHDHSCIIMETLSTNCIRNQHAPPTQENTCTNKYITSQELLPNPRIPPKQVDKQEPQKHAGQVSQFPKYTEISDKNSNNNAKRHKPSQHELTNCYAIPTRVTHRTSSKKSTWRRNKHGARINQTEEGFRKDKWKANMRFFQYYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LKF2</accession>
    <name>A0A6S7LKF2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057113</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024088">
        <property type="protein sequence ID" value="CAB4038333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LKF2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="72"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12393" checksum="1C1EDC6097130754" modified="2020-12-02" version="1">MVKKLMTQLNERDTRCRLLEKELDYIRSWYIAGSQPKYPPFQSLPMAVYGGPALRDMYCNQSAVIQEIPVFSRNGESPSLTNRIKSDELERDSGSGKKDENDSKEESE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS55</accession>
    <name>A0A6S7LS55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023882</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027083">
        <property type="protein sequence ID" value="CAB4040659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS55"/>
    <dbReference type="OrthoDB" id="6577442at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="43743" checksum="1169580BF757F502" modified="2020-12-02" version="1">MENGMLTGAALLDFSAAFDLIDHNLLLLKLKCYNFSDNAINWIKSYLSERTSTVYINGAFSNPIEMTCGVPQGSCLGPLLFSLFVNDLPTVLTTADITLYADDSTPFQSGHNARLISDKLQLDLSKVELWVSKNRLVLNADKTNSILIGSRQKIKSAPSLNLCIKDKIIEQLPCVKLLGVQVDENLSWKQHCEDLLKDCSKALGLLFKFSRYIPSKVLKIIAEALILSKLNYCCTVWGSAQNQESINNLQKLQNKAARLILGYKVDEISRENLHDEIGWLTVRQRIHVRTLVALHNVLYSGEPNAIYVNFKPLEITHEHNTRFSSRCRSDNMLLEKPMLKKKTFLARAFRTRAIRLWNNLDYTIKIISSKSMFKSAVLKQLDWFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUR4</accession>
    <name>A0A6S7LUR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035378">
        <property type="protein sequence ID" value="CAB4044553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUR4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="65" mass="7132" checksum="73928525C0CEA093" modified="2020-12-02" version="1" fragment="single">MTVLGFENKSGQPGNFPIPENLSNQSKLASNQSKLAKQQYLHKASAQIIDKLVFTNDSIEKALAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8X6</accession>
    <name>A0A7D9D8X6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A003718</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000220">
        <property type="protein sequence ID" value="CAB3979697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8X6"/>
    <dbReference type="OrthoDB" id="8052806at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="173"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="449"/>
            <end position="520"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="521" mass="59855" checksum="B0F31703B3205C5E" modified="2020-12-02" version="1">MFVRETNECEQLYSLDVLGVEDRSEKDQMEVLTDFRESVTRQEDGRYEVSIPWIPGARLYGTNEQPSRIRLANVNKKLSKDRSLKVEYEKIVKDQLANGIVEKAPEKPAGKRTYYMPHKPVIRENATTTKIRMVFDASAKPAPLANSINECMFTGPSLQPLLWDILIRARMTPNLLLADIQKAFLQIGVKETDRDAFRFLFEIDGKEEHFRFARLPFGVEASPFLLGATLGYHLEQQPTRFEETVTALKENTYVDNIMKTGSDTDDLRKFKEESSIILEDAKFPIHKWESNIACLEDENMPNPSKILGHVWDKQEDTLEFEAATMPENQPITKRSILSRLGRVYDPLGMVSPTMAEGKNIFRDACEERKGWNAEVSESLKRKWIKWNNQMKNVKVPRAITKKSDVIEGIQLHLFADASNLACCAATVAVVEHKSGTVKDEEDELTKMQRRLRKAKDDAWKRWKREYVHSLLESQRVNNKVVEVPQIGDVVLVVGEEKNRGEWKKGKVLRQVRGKDETLRAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAE7</accession>
    <name>A0A7D9DAE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000292">
        <property type="protein sequence ID" value="CAB3980462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAE7"/>
    <dbReference type="OrthoDB" id="5987001at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14864" checksum="7150E48F07ADF0D3" modified="2020-12-02" version="1">MGNCIAGHSSINMLKRLMVNIEAFSTIRAAYSSPSAFDVHPTSRHKEQDPILDQLKAMWFCLKENVISDDASDDVIHKMTKEGNCEGNVQQSLIDVYSKGKLKVKQQFSRMLYEKFNVCVSEQSDNESIDSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DD94</accession>
    <name>A0A7D9DD94_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029550</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000450">
        <property type="protein sequence ID" value="CAB3981974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DD94"/>
    <dbReference type="OrthoDB" id="10007484at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="2">
        <location>
            <begin position="569"/>
            <end position="676"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="239"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="209"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="239"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="260"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="275"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="959" mass="110541" checksum="75ACEA2748719F09" modified="2020-12-02" version="1">MVSYHVYVPLLLRLANDVEENPGPVNIYNIVDHSFTVPADFNQGNISMFGINAGKQCVAMSIYAIVYNEIKSVNIWDTPPMNMLLVNANNLYAIISQHIQKDFLLLTDVPEILSINNDTFNLEYSESFSGALWMARNNEPYVTLEHAFHEVFDAGNYKACLLTIQANTVAILMPFPGVFKFNYPGQNSQNTLFELKGVKCHRNISLSNSLDNSANDTSSNNHEQQTKQQEFVIEKENGLAKQKENKRQQESVVESENRLVKRKERRRQAKQQESVVEREHKLAKRREKEPKGEKTTSKTKRRGKIDFKSSERFKRQNEAVEQREQRLAKVRANYKENKSTRVLEKANNVLHQVLKGISIMITAAAWFVNTSELYREQGITFDQHWLSYFDVTTPNNNYNENTTVDQTNSASSEDEWSEDEAEIPAGVTDSVLTPTDFVDDTERQHIYNVAPGEGSRPLSVFRDQYSEELAYPGIFLGQKRPYEKQRLTHVYYSEICKSELRRSDRRAAMCIENIFFKTKKMQMKLLLGQSQLAIRKCKMGNRTLTAGELKTPEGLTNLICHNEGYKFLRALRGSPPYFEKAKKDLFAMIRQLGRASLFCSFSSAETKWNHLLRILGKLVDHKDYSDEQLDNLNWDEKCRLIQNFLMSDIAPLGKLKDWFYRVEYQQRGSPHIHMLIWLENAPVFGVDKDEDVVNFIDQIISCRKPDNDTELFDLVHRQTHRHSHTCRKNSKKVCRFNYPQPPMRSTQILHPLDDNASETVIRARKELWKNIKNKLNDLNEGEDVTFEQLLKELDVSEYQYILAIRSSLNCPTIFLKRSPNELRINNYNPACLQAWGANMDIQFALDVYACAMYIVSYISKAQKGMSDLLRNACAEAKEGNSTIKQQVRDIGNKFLNSVEINAQEAVYIILQLPMRKSSRNVVFINTSPPSDRVELLKPLSEIEKMSDKSEEIHSGGLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEJ5</accession>
    <name>A0A7D9DEJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000522">
        <property type="protein sequence ID" value="CAB3982608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DEJ5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="22173" checksum="F29AC464D1764BFE" modified="2020-12-02" version="1">MEASMKYIDEVFRVVRQNATNINDVPTLQKLLEAVGSFYVSLFAQDDQSEAILERRAMKGMLAKAPRIRPVPRPRQQPHASSSQDGDTPGRGMGKGRPGEPRKEDERQKRKRAEKQITPAPSKQVREATPSATPPLAQRLPNQSPPSADRPRPLAPEPRRELRLQTITASGTKHEMAIKCLGEGEKDQLTRSCSCSSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DTE1</accession>
    <name>A0A7D9DTE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A008322</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002290">
        <property type="protein sequence ID" value="CAB3993597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DTE1"/>
    <dbReference type="OrthoDB" id="5945834at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF53">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3993597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="331" mass="38072" checksum="1F2297403B872568" modified="2020-12-02" version="1">MVLLYFSIVLGAFGEEANGNDQLYFKMKQGIRSQREAYMSLRAKTAMDCVLFCFEEKRTCTSLNYAEPTLVNDGEENCELHEKTKNDDDNSLEFLKDDRYTFYQNTQKTENATEQPNTPPLNRSCLDHFNHGSKTSGNYTILDSRENARTVYCDMESEPGSVWTLVMSFTRANKDLAPFKKKAMYQPAHQNRFDPNWSDYRMGTSLIAALKNMTTHWRITCSFPQYGVDTKTDYVRAVFADFDLLSEFSGECKNVSYISVMGQSCSKCTAQWTHITYYTPHIAAMQNDSACDIKSDKSGYHYFGAYDNYNLNFRCTESSNSTTNYWFGSYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DTT9</accession>
    <name>A0A7D9DTT9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026919</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002206">
        <property type="protein sequence ID" value="CAB3993186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DTT9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="42"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11183" checksum="37523C5E5EB3FA1A" modified="2020-12-02" version="1">MKSSKHKGNQHAIEESCVYQSKYQNRIFLCLDNITENKDENAASAESSDTDSSQDSPVHSSSISTKKSSGESSRKSSDSESSDESSDMPVDRPENEMNWSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXM5</accession>
    <name>A0A7D9DXM5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HECT-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="2">2.3.2.26</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A008173</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.26"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.26" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020002711">
        <property type="protein sequence ID" value="CAB3995691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXM5"/>
    <dbReference type="OrthoDB" id="5982836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000209">
        <property type="term" value="P:protein polyubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2410.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044611">
        <property type="entry name" value="E3A/B/C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45700">
        <property type="entry name" value="UBIQUITIN-PROTEIN LIGASE E3C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00119">
        <property type="entry name" value="HECTc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0833">Ubl conjugation pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3995691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="673" mass="75834" checksum="8BC2FA49D64E7476" modified="2020-12-02" version="1">MFCSKCGSSLNKLIETTETSATSKSSKDTTTRGTKCLSFEEYASKKKEERATHFRSSSKKKAKPKDMETVALINIGLMKYVSFDMTTPVRGKSLPLKVNKDAKYAEVFSVALTKREAYDKSFDTKLSWKLVYPDGQYCLTLPGQEDQEFTLRKYKEDLGKPYNRITLYLCPEEPDFNPEASDEDQFDVTQDVRKRKRKDIAFVEDEIGCGGSQNIDVTKSGIETIPESKKQLDDPSCSSNGVSFDKSTWSDTWLPSNDDLLYASLLFDEQVPWSDSDNENVQEQSEEINKVNNDKQSLHDILVELNSNINPTQISKFNICRSHLWEGAVRGLNRKSFSPAHKVSIKFTDDVGVAEGAVDSGGPMREFFTLIMEWMVSSQLFCGTERDKYLSSISNYLTNDYYFYAGELIAMSIVHGGPGPRCFGEPLYDALTKGVLKASVNVDDVYDFELKNSLNTFKNASTVEEARKLISDSNNLETILDLAGTLQVFQTTEDVLNVVDKTAHWFVLERFQASLERFKAGLSILGVLDAMCMHYEQFRDVFCYSSCTFSADTFGSLFSFLRSEEGSNKYAIEGLVLSHWNDFLQDIEEQVIDGLSFFDILFFASGCKYIPPLGLALEISFLHTPEASGSRSRFPKANTCACDIYLPVIHNTYIEFKKDVTLAFLNTKGFGYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E5P7</accession>
    <name>A0A7D9E5P7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Spectrin alpha chain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A059176</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the spectrin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003884">
        <property type="protein sequence ID" value="CAB4000631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6018565at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051693">
        <property type="term" value="P:actin filament capping"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11808">
        <property type="entry name" value="SH3_Alpha_Spectrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00176">
        <property type="entry name" value="SPEC"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.58.60:FF:000007">
        <property type="entry name" value="Spectrin alpha chain non-erythrocytic 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.58.60:FF:000006">
        <property type="entry name" value="Spectrin alpha chain, non-erythrocytic 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.58.60:FF:000013">
        <property type="entry name" value="Spectrin alpha chain, non-erythrocytic 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.58.60:FF:000017">
        <property type="entry name" value="Spectrin alpha chain, non-erythrocytic 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.58.60:FF:000020">
        <property type="entry name" value="Spectrin alpha chain, non-erythrocytic 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.60">
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.40">
        <property type="entry name" value="SH3 Domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035825">
        <property type="entry name" value="Alpha_Spectrin_SH3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036028">
        <property type="entry name" value="SH3-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001452">
        <property type="entry name" value="SH3_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018159">
        <property type="entry name" value="Spectrin/alpha-actinin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002017">
        <property type="entry name" value="Spectrin_repeat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11915">
        <property type="entry name" value="SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00018">
        <property type="entry name" value="SH3_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00435">
        <property type="entry name" value="Spectrin"/>
        <property type="match status" value="14"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00452">
        <property type="entry name" value="SH3DOMAIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01887">
        <property type="entry name" value="SPECTRNALPHA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00326">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00150">
        <property type="entry name" value="SPEC"/>
        <property type="match status" value="13"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50044">
        <property type="entry name" value="SH3-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46966">
        <property type="entry name" value="Spectrin repeat"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50002">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0117">Actin capping</keyword>
    <keyword evidence="9" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="8" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0728">SH3 domain</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4000631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1564" mass="182816" checksum="22FA94C6D889CE0B" modified="2020-12-02" version="1">MTEIQVPSREIPVLETVEDIEKRREQVLRRYAEFKEATRLKRIRLEEAKRYHQWKRDVDECEIWINEKLQIASDESFKDATNLQVKLQKHQAFEAEISAHTNTIITIKTTGEQMITEEHYESVTIRERLDHLMHLWELLLMQSAEKGRMLLFTQKRIHFIRECSEVLMWIADREVIVSTEESVRDFEHVEVLQKKLEDFAKDLDANENRIKSINQQADTLEVEGHPDIEVIQAKRVEVNEAWDKLHQLVIVRRTKLTSSHEIHSFYREVNETVQWIIEKDTVLSSDDYGKDLASVNALKRKHDGLERDLVALDDKVQNLGSECDQLKESHPEVAEDIEEKKEELVQAWEGLKEKSAVRRTRLEDAYNLQRLLADYKEHILFITEMKTLIETDEVAKDVAGAEMLIERHQEHKGYIDAQQEGFDKFFTSGKELVDGDHYAAEEIKEKLDNLETEKTSLYELWEQRKVTLDQSLELQLFYRDCQNADNQMAKQENILSDEDVGDSLDAVDALIRKHDDFAKSFAAQEDKIRDVDETATKLVENEHYAAPDIDERRNEIVTRRQNIHEKSEKRRELLEESRKLQQFEKEADETKAWINEKLKIATDESYKDPTNLQRKAQKHEAFNAELEANQSRIDSIHDKGKQLISNEHYASDIIQQRLDELDELWKHLLEKTQEKGNKLRDAKQQQQFNRGIDDMDIWITDMEAQLLNEDIGKDLSGVQNLQKKHGLLEGDIITKQERIDVCSTQADLFSEQEHFDAPTIVAKKAALMTRYEKLKVGFERNRVLLLQCTPTEFAVIKSIFPTPIQNLMDDGRTMIDEDHFRKDEIKEKMDDLETQWMQLKDNAACRKDDLDDSLHAYQYLADVTEAEAWLTEKEPLVTSTDYGKDEDSAQAMLKKHNAVMSDLEAYGTVVDQLRDQSKTCKTITPVKDFSDRECVEALYDYQEKTAREVSMTKGDILTLLNSTNKDWWKVETNDRQGFVPAAYVKRIDSKTASQDLLDKAEDVDTVSQRQDALDKKYQDLLESGAERRKKLEESIERHGLLREAHEIESWINDKAAVVTSEEVGDDFEHVEAQKKKFDDYQKDMRTIEVRIKELTIISEKLKVEHRREYEMIQEIIKRLTERWEELQQLSEKRQQALESAQEIQKFHRDADDTKAWISEKDTALSSADYGRDLASVQALQRKHDVLERDLAALEEKIEEKLQTVDDERKDLEKAWAERKDKLDQCFELQLFNRDAEQLESWMAPREAIIRTEEVGGSPEGANKLVKTHENIEKSIKQQEEKIKALQDYANKLTENDHYDSPAINERVESVLERWQKLKAALVERRSKLGESQNIQQVTRDAEDIEAWISEKLQSVQDESYMDPSNLQSKVQKQQAFEAEMAANEERVLHIIATTNQLIEERKCASNEEIVRERITKLQEIWEKLTKQSQSKSRYLMESNQLQQYNNNVKELDYWLGETETLLSSEDCGHDLASTQNLLKKHQLVEADITAHQDHVNDLQAQAEKFIEKEHHDSTTIKEKAETITTRYEKITNMASERRARLEKANDLQQLFRDIDISFSSVVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E978</accession>
    <name>A0A7D9E978_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004502">
        <property type="protein sequence ID" value="CAB4002981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E978"/>
    <dbReference type="OrthoDB" id="1681765at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="35"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18842" checksum="A194B0DCC9C3BF15" modified="2020-12-02" version="1">MSDMSEAEENVSVPTDNDLPQEKPQPAHLERNETSTKTSSTSKTRSGRRAITADIEVAVHATKAVIALHNYLMTGRCFSDNPYCPPDYVDLELNGSFKLGGWREDNENTGMLDITNLSSNNYFLEVKTVRDNFRDYFNSNAGSVPWQNEMVTCTSYSFDRKLWNRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ECT1</accession>
    <name>A0A7D9ECT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005702">
        <property type="protein sequence ID" value="CAB4007115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ECT1"/>
    <dbReference type="OrthoDB" id="6015128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14032" checksum="DDD21DB1D9940E23" modified="2020-12-02" version="1" fragment="single">SEHIVCGVPQGSCLGPMLFSLFINDLPSVLDTASITLYADDSTQYHVAENVNLISENLHNDLLNVEEWIRKNRLVLNVEKTKSILIGGRQRIKVAQLLNLSMKNKSITSNHVSNFWECRWMRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EES8</accession>
    <name>A0A7D9EES8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC110062112</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038076</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005809">
        <property type="protein sequence ID" value="CAB4007479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EES8"/>
    <dbReference type="OrthoDB" id="5954791at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="140"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31592" checksum="900D7E80DD23550B" modified="2020-12-02" version="1">MFNNRPQFIIKAEKNKEFDKSCLIETFNIGNGNIADCLKHCLENCRCQSFQICDKTKCQLCSSHKKGNSSLLHDKDDCVYAMYEMRDLTETFQKLEGQCSSMNCPMKYNCCQQSGICLENKICKPVNSQEQPWKRFTCACPDGYHGDNCDQPITSCQGYAKGSRKSGMYKAVDSIVGLLYSVYCHFDSESAWTLVQSYSFANRSLDHFKKSLSNNRPISENALTWSGYRLSKARMESIKSNSTFLQFTCDYDKDIAIDLNQSDFVQLELQNLKTIVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPS9</accession>
    <name>A0A7D9EPS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042813</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007822">
        <property type="protein sequence ID" value="CAB4013274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPS9"/>
    <dbReference type="OrthoDB" id="2423517at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21347" checksum="2EC9CCA615E36F7E" modified="2020-12-02" version="1">MKFSKEGIRVWRAYGIGPGKLKLWDDFSVPKDYLPPTLEDPHEQHSSLQNHLDCGKHKYTLACETLFDKAIIMYASKLKQRAICDVPQICEGIPVDVVVTPILNMGWALSEKQKTYVLDTYQVGEQTGQKADPVSVSRTMKRARLSSGEPMFTAIEYLMPQQIASSIRMKQQREEGCRWHLNYIPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZ82</accession>
    <name>A0A7D9EZ82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010214">
        <property type="protein sequence ID" value="CAB4018900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZ82"/>
    <dbReference type="OrthoDB" id="10016665at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031593">
        <property type="term" value="F:polyubiquitin modification-dependent protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14326">
        <property type="entry name" value="UBA_UBL7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd17039">
        <property type="entry name" value="Ubl_ubiquitin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015940">
        <property type="entry name" value="UBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015496">
        <property type="entry name" value="Ubiquilin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000626">
        <property type="entry name" value="Ubiquitin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047878">
        <property type="entry name" value="UBL7_UBA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10677">
        <property type="entry name" value="UBIQUILIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10677:SF25">
        <property type="entry name" value="UBIQUITIN-LIKE PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00627">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00240">
        <property type="entry name" value="ubiquitin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00165">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00213">
        <property type="entry name" value="UBQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50030">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50053">
        <property type="entry name" value="UBIQUITIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="246"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="246"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="350" mass="38230" checksum="FC9DB1C3E198671E" modified="2020-12-02" version="1">MPCIWIKQALAVKGNKFKLEDVSLNAPVSELKAKLSESSGIDEKLHDVIYRGLLLQDDKTLESYGLKDNATIYIIYKEPKVEGLDFDVNVEDIIPVLQAAAGSPVYKDKMSALLKNPETLETILATTPALAHDPVALSILRDPEILQNLVQSGNISKLAEEHPALVQAASHVAADITKDIPGPSRLHRNSEDDDLMDIEPEMLAQAELMAAHEEAIQNRQNPGRRHPITPSFLASALQVAGANVVSTSTQTTTVNLPSTSTGTSTPRVPQQEQQQQQQRQHHQQRISPEFFNQAMASALSANAGRNNWQSEVQQLRDMGIEDEALSLRALQATNGNVEAACNLIFEGGLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F096</accession>
    <name>A0A7D9F096_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030109</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010680">
        <property type="protein sequence ID" value="CAB4019909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F096"/>
    <dbReference type="OrthoDB" id="5967017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12068" checksum="DFA8704AC80D9E56" modified="2020-12-02" version="1" fragment="single">SVQEGESVSIEVYGVDSISQIRNEHVETRKKDDPHLQGLWFSDVCKTKNVLEIKLLIGADYLWLFQEGRTVRSKSDEPVAVQTKLGWVLSGTLKSSSEDDDDPTSCAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HB67</accession>
    <name>A0A7D9HB67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Proteasome activator complex subunit 4 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A079993</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus speckle</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the BLM10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000276">
        <property type="protein sequence ID" value="CAB3980286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="17907at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016607">
        <property type="term" value="C:nuclear speck"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016504">
        <property type="term" value="F:peptidase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070628">
        <property type="term" value="F:proteasome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010499">
        <property type="term" value="P:proteasomal ubiquitin-independent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032430">
        <property type="entry name" value="Blm10_mid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055455">
        <property type="entry name" value="HEAT_PSME4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035309">
        <property type="entry name" value="PSME4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021843">
        <property type="entry name" value="PSME4_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32170">
        <property type="entry name" value="PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32170:SF3">
        <property type="entry name" value="PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23096">
        <property type="entry name" value="HEAT_PSME4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16507">
        <property type="entry name" value="HEAT_PSME4_mid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11919">
        <property type="entry name" value="PSME4_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-0647">Proteasome</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Proteasome activator Blm10 middle HEAT repeats region" evidence="10">
        <location>
            <begin position="307"/>
            <end position="805"/>
        </location>
    </feature>
    <feature type="domain" description="Proteasome activator complex subunit 4-like HEAT repeat-like" evidence="11">
        <location>
            <begin position="1164"/>
            <end position="1449"/>
        </location>
    </feature>
    <feature type="domain" description="Proteasome activator complex subunit 4 C-terminal" evidence="9">
        <location>
            <begin position="1766"/>
            <end position="1850"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF11919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF16507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF23096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3980286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1850" mass="211546" checksum="4B1BF6AE06B27D08" modified="2020-12-02" version="1">MERKDNSPFQRDVVYNKLLPYSECLDHEALVALEEIKYNLGRSVVLKELRPGALHWSNRLFSYIKLYGHRFSKDDHVLFIKLILELIIAIDLDSQLLTGFCHLFIKLLKKRELLSRDDLVIQWQPLYQIYESMCHSKFETVGLKRHSCQLEELVKQVIRAARVYFSDDATQEMLDEWRPLMCPFDITFAKAMQYFSLFLPTTLPPEKHDKGFKLWLDELVGFWDSCHNSPSWEQFCVKLFARVAKDNVGYVDWKPYIPKIFTRVMRSFNLPLGIKSRSNSRDNYDSYVSAVWIISMMGDDDCVQSHLDNFFESVKSFYYPSNIGKYTVKLQQFLSRLSRVFTDRVHRERYKKPSWETSIPAKFQLSEDRILKFVECLKPVVLLSMFNKMGSFEAATCLQQLAQLKPAVVLPTLLDRTYAALDTLTEPHQLTASLTCITAVARPLLSSTQAFPDGPTHLIRLLTLVLPGIDANDFRKAMATFTFISTLVSLVPLVDCSQAAFTMELSETEKEICAASGQFEDFVLLFMERCFAMIENCQFQPTSELNSGANMEKMDSQEGMLGMGLTSTFHTILMQCSPQIFKVALKHLFQFCSNKIFETKVAGQMVADFCRAAARTDSEATLKLFIPYIHSSIENITSVEGVQDEEEVDEELIWCLQLLSEVVRCNGLKILPYKQELVDVLKPCLGLKCKRAFHFAAKILHHLIPSLILLYPMEWKSSPHDFGLPPEEHLFIKDWGASSDVDDVSMKWHIPSLEEKMFAKELLDAFLLPVLERLTHFTQGNEMTRDELQHNVDLVHHILQGSCGLLPDFQGPFLDKIEVKTLVNRDREKNTVSCGPDVSLGDCTRDNIAQNIHNLLVYVLSKCEDDTKTLFTIIKIYKALLLQFGVARAEFDVRWKSAHAVKRAMQNKLCHKKRHIRALLVERIQLQHEMRVLDDRSCYMSALQELLITDLFSLSTSVYTEVRAKAQKVLSLCFESFLYSARFLMDSIVGKLKPDPGVSHEQFKGSLYILLNTRVQYLMTHYWEIIEKIWLAVAQAEHSEKPSIIALINLITDKITKKYDAVAVSRTVSTSAIDSATSLLHAVNSDYLPSSCSGPVIPLEDEISGGEKALTCKNDANLQHYNSLVEKLISLVNGNDLRWRFSQICIRLLSLLVRCDVDPPTCLVKLFTENLVHDSLAIRKVAIASMGAILKLQKRKHPKVMIDPYAEAGVNHTENGIIQAGDRPDNYWLHYVKENLPRCEEDWDKCQFVDKTHWGYYTWPKKLYTYAPCSQQPSLDRRREDLNETEQEIFDSFSNPEFVDKLISYLSLEDRKGKDKFNMQRFVLFKGLFRNFGDTFLELFKPHLEKLSGDTHESNQRCASEITAGLIRGSKHWTFQKLVSLWDFIIPVIKKALDNITVETIRDWGTCMATAAESRDPRRIYRLLDLLMDDPLNGSGGAFADSSRLYVLQGALAQQEWRVAELLHDLLKYIEPKLGHSYKDVRDRLGSVTCNILMCDIKLARGTPSRSPRVVDFIKTALPQLCDLKDVDLLQNNCVVTSDVVMSAEKIMVDDLECIDLSADIDMVSLNPTESFEEDDKRKSAIKLSKTVLNWLWSNSSRSLESCPSELFELLPLIVPLESQEDDQELQNLCSNVLALLSYCLLSSEALSQAVSTITKIAESPSWHSRKSILTFLQGLVCGNFFMVIENTSHVTSIQSIVLNLLTDKQLEVREAASQTLSGLIHYGFFKVDKNLQKKFLDLAATKLPKKRKRDVDLEESDVSSPYVLRHAGVLGLSSCIKAFPYDVPDWMPQMLVEIGEHLHDPNPIQATVKKVLSDFRRTHHDNWTSHKQQFSEEQLLIFTDLLVSPCYYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HGK1</accession>
    <name>A0A7D9HGK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Neural cell adhesion molecule 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A006257</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000593">
        <property type="protein sequence ID" value="CAB3983251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HGK1"/>
    <dbReference type="OrthoDB" id="6132182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01450">
        <property type="entry name" value="vWFA_subfamily_ECM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000057">
        <property type="entry name" value="protocadherin Fat 1 isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050525">
        <property type="entry name" value="ECM_Assembly_Org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020">
        <property type="entry name" value="COLLAGEN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020:SF84">
        <property type="entry name" value="VWFA DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00453">
        <property type="entry name" value="VWFADOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="243"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3983251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="41682" checksum="7D779CD5EBAC6D74" modified="2020-12-02" version="1">MKRSLVSLTCALLYLTCSTLAVPIGNKTCTKVVDIAMILDESGSIGYSDFQDIKTFVGDVISHFSVAPFGAHFAAVKYSGSPREVFSLTKYTDAAQLHTAVKNMNYKGGSTYTGKALEMVQQNIFGTQDDRKDVPNVVVLFSDGESHDHSKAVRVAQEMRDNGVEILCVGIGNGQTQNRLMKQLKELSSKPGYTFNITMNALNTIENSLVKDMCEAISACASKPCQNGGQCVDDSNGGYQCKCSPNWEGKDCEFPKWCLAASFSKWGCYSTPQRRPATSKLLFNRRNAIDWFAGWDKYLEKIVCDCGKAAKDEGYRYFCIEFYGECWGYKDFNVNQPHAGANACWGKRPNYDTCIHNQRSPICVGTGKHGYIYELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIJ2</accession>
    <name>A0A7D9HIJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A060187</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000509">
        <property type="protein sequence ID" value="CAB3982507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIJ2"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632:SF3">
        <property type="entry name" value="KELCH-LIKE PROTEIN 32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3982507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="569" mass="64231" checksum="9A6FEDF823CABDF8" modified="2020-12-02" version="1">MASYDTGYEDELFQHPVGHTLHCGICMNVLKDPISCRHNEHLFCRACITIHLMNFQTCPSCMEPLTVESLRQAPRTVTNLLSELKIRCQFFDRGCGQFVELGDLERHVTDCGFAPAVCSNKGCQLEVNKQDLLHHETAVCEVCRVKCHSCNEIKQEMDTVKVNLAAMNEKLKGVGEQLIRHEKQMDRNQENVKTEFGNVVAKAELVQEQLRRQLNKQEESNRRLEADNVEIKKSLNEIMKQLERMTQQTSHKVQAEEMKKDIAEGEMDREPKVLVAGGRNGRKHLNSVEMFSLSNATWTPLKPMKESRSRQSSVVHNNQIFVMGGVGLSGEAIKSIEKLSLNAVQVDQSITWENVLAELPEALCGHCSVVYNGRLLVIGGYYYSKCACSDSITEISLVPPYTSKLLATMPQARCYHGVTMVGDKILILGGRASIVDCSTKHTNVLLYDIIKNECKELAALPYPVSEMATVKWSDNSAIIMGGADHDNQPINKVSLYKIKTQKSRMLPDMKYKRRGCVAAVVRDTVIVMGGMKERRKYLKSVECFRFDRYSWQELPDIQEARYLATAVVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HPE9</accession>
    <name>A0A7D9HPE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA repair endonuclease XPF, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A009507</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001048">
        <property type="protein sequence ID" value="CAB3986645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HPE9"/>
    <dbReference type="OrthoDB" id="6019266at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000110">
        <property type="term" value="C:nucleotide-excision repair factor 1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000014">
        <property type="term" value="F:single-stranded DNA endodeoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901255">
        <property type="term" value="P:nucleotide-excision repair involved in interstrand cross-link repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000712">
        <property type="term" value="P:resolution of meiotic recombination intermediates"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10150">
        <property type="entry name" value="DNA REPAIR ENDONUCLEASE XPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10150:SF0">
        <property type="entry name" value="DNA REPAIR ENDONUCLEASE XPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3986645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="29391" checksum="2507EAF253336EE9" modified="2020-12-02" version="1" fragment="single">IHVLLFIILYFYLRIIDSCQEAFILRLYRENNKTGFIKAFSDAPEAFTAGFSKVERVMKNLFVKKLYLWPRFYAPMSAFLERHTPELVELHLQLTPSMLVIQTSILDLIATCLRDIKRLNSFLDPEELTVENSINKYFDKLLRLQLDPVWHQLSSKTKQLVADLKVLRTLLFYLTQYDCVTFYQFLQSLRASERDTMYHSMWMFMDATEALFVHARERVYQLSLGETKSKAKKQKTLTNDESKRFVLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HRC7</accession>
    <name>A0A7D9HRC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049558</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001832">
        <property type="protein sequence ID" value="CAB3991350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HRC7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="23523" checksum="FE4ABE55F7C3A5F3" modified="2020-12-02" version="1">MATPEEIAHVGKRVNTVEELEAAVRKHAESRIKRKHTYDPICSECGSKSIVMIDGADTCTQCGASDMNNFSYYVSYNYNKDDYLKKKSCHNRVRWFERHLFEHVASRDRDTIREQFRSIVRCIQRLRLERGRNIVRYKFYLLRIASMNGITLRNPPEDIKTQRIVDILEDRLYGKVFVELGWKPEKCEYYNNWKSKNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXV6</accession>
    <name>A0A7D9HXV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein F54H12.2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002144">
        <property type="protein sequence ID" value="CAB3992891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXV6"/>
    <dbReference type="OrthoDB" id="5975932at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009263">
        <property type="term" value="P:deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000358">
        <property type="entry name" value="RNR_small_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409:SF21">
        <property type="entry name" value="CAPSID PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409">
        <property type="entry name" value="RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="371" mass="40858" checksum="0A6757BEDB2D6734" modified="2020-12-02" version="1">MALETMHKDSCMCSKSELDLFSIPPTQVVMEKGFWEAVDPITSISSSDTIEFLCAANSGVYTDLASSYLHVKAKITTAAGENVDADIQVGPSNLWMRALFSQVEVFLNKKLVTPSSTAYPYRAYIETILNFSKDAKDSHLTSALFYKDKAGKMDVVNPLAQDANVNTGLKQRHAYTRESKSVAMEGRLHSDLFAQDRYILGAVPIKIKLSLQQITAKYPINRIDCKVVSVPRGNMSGNQPNIFQGGLPNRIVIGMVDADAFNGTYTKNAFNFKNYDITTMGLTVNGEKLPGKTGNGITREEYANGYTLFVFDLTPDLCLGDHVQPIKNGNVSIDCRFGTPLETAINIVVLGEFQSLIEIDANRNVLCDFNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I1C6</accession>
    <name>A0A7D9I1C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Eukaryotic translation initiation factor 3 subunit D-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A089647</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002410">
        <property type="protein sequence ID" value="CAB3994190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I1C6"/>
    <dbReference type="OrthoDB" id="16538at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005852">
        <property type="term" value="C:eukaryotic translation initiation factor 3 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007783">
        <property type="entry name" value="eIF3d"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12399">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12399:SF0">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05091">
        <property type="entry name" value="eIF-3_zeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="72"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3994190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12760" checksum="DC54FA1723CB0261" modified="2020-12-02" version="1" fragment="single">YVSRKNFMDSTKHCILGTQQFRPRELASQMNLSMDNGWGIIRCIVDYCLSLSDGKYLILKDPNKGMIRIYDIPNNTFESEGEDDDDDDDDEEADDEEEEPEQNGKANSDGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2T6</accession>
    <name>A0A7D9I2T6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A018508</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003456">
        <property type="protein sequence ID" value="CAB3998867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2T6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="212"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="285"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="291"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="35703" checksum="4ED37A21028BDC28" modified="2020-12-02" version="1">MATDLKSATGPDGIPAYLLKRCSEVIAPSLTVLFELSLQQGVFPSEWKSANVVPIPKKGDVHEVTNYRPVSLLSQVSKVLERLIFRQVSSFIKDSLYDIQHGFRCNRSCVTQLLNVFHDLGRALDSGNEIDLLYLDFAKAFDSVSHSKLLFKLKSFGISGQLLNWFADYLHNRKQRVVIEGVSSSFLNVKSGVPQGEATGSKVDCESSGTVVVWHIVVTLVSGFILGILFFYIVWCSHRRWLRNRNPDRNPEPKITEADTTYQELDLTKMNKEDNYQSLRVNAVTHDAGNQAGNDDNSTYTELSKTRDMENKYQSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6N6</accession>
    <name>A0A7D9I6N6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003452">
        <property type="protein sequence ID" value="CAB3998842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6N6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="21277" checksum="EE8FCAEC87897FE2" modified="2020-12-02" version="1">MNGSSKKLRLIEIIYAKIIARSIEKKFGLFCCGCKVRDQDCLMLNEFEKWKMYGLDAIEEAGTSYAAWREFTSLIEILNVPFEKYFTEHLLSLEENPDLMLIESLFKEYRDNQALIEVLCDLSDPKADPLEPVAEFLFGSPPTFIYYVRGKGEKFRSKEQDEQKAYQNYLRDKLREHFNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICD1</accession>
    <name>A0A7D9ICD1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Peroxisomal acyl-coenzyme A oxidase 1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A011356</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism; peroxisomal fatty acid beta-oxidation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Peroxisome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the acyl-CoA oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004308">
        <property type="protein sequence ID" value="CAB4002269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICD1"/>
    <dbReference type="OrthoDB" id="538336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003997">
        <property type="term" value="F:acyl-CoA oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005504">
        <property type="term" value="F:fatty acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033540">
        <property type="term" value="P:fatty acid beta-oxidation using acyl-CoA oxidase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055088">
        <property type="term" value="P:lipid homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000038">
        <property type="term" value="P:very long-chain fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.10:FF:000005">
        <property type="entry name" value="Acyl-coenzyme A oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.10:FF:000013">
        <property type="entry name" value="Acyl-coenzyme A oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.110.10:FF:000003">
        <property type="entry name" value="Acyl-coenzyme A oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055060">
        <property type="entry name" value="ACOX_C_alpha1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012258">
        <property type="entry name" value="Acyl-CoA_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002655">
        <property type="entry name" value="Acyl-CoA_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909">
        <property type="entry name" value="ELECTRON TRANSPORT OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909:SF344">
        <property type="entry name" value="PEROXISOMAL ACYL-COENZYME A OXIDASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01756">
        <property type="entry name" value="ACOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22924">
        <property type="entry name" value="ACOX_C_alpha1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="Acyl-CoA dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="Acyl-CoA dehydrogenase NM domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0274">FAD</keyword>
    <keyword evidence="7" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-0576">Peroxisome</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="746"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4002269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="746" mass="83829" checksum="063F0950EF2340C5" modified="2020-12-02" version="1" fragment="single">HVRDASSRRMEPTNRLALMANVDFELTRASTTATRRQRLYQYSKSLKRIDIVLALFTTPNHKFSLCFGRRRRVAVLNRKNQSTPEQLEKWMPLIKKYKIIGTYAQTEMGHGTFVRGLETTATYNPETETFVMHSPTLTATKWWPGGLAHTSTHAIIMARLITGGKDYGIHAFLVQIRSLEDHSVLPGIKVGSIGPKMSYDVVDNGFLNFNKVHIPRQNMLMKYSQVSRVGEYSRLKRDSEKLTYISMVATRAFIAFNTARELSKACTIAIRYSAVRRQSKLDESKSELQVLDYKTQQYALLPVLATSYAFWFTAFEITKLYFRVQMEINDGNLSNAQELHATSAGIKAFTTQNAATGVETCRFRCGGHGFSMSSGLPTIYGDHVAPSCTYEGDNIVMLLQTARYLVKCCSRLASGQPVTTPTAAYLTAVAKETACVASSPQDFRNPEILVRAYKHRAARLVLAVSRKLQQNTSKGVSPGDARNICSVELVRAAQAHCHQFVVEQFANVIQNESFSATLRPVMEAMFRLYCVHGIVEQAKDFLEDGYMNGEQVNMANDVLMELLDEIRPNAIGLVDAFDYSDYCLNSVLGRYDGNVYEHLMKWAEKFPLNKNEVMPAYEKQVSSFVENSLYDLQHGFRCQRSCVTQLLSVLHDLGRTLDSGKETDLIYLDFAEAFDSVSHSKLLFKLKSFGISGPLLNWFADYLRDRKQCVVVEGASSSFLNVPSGVPQGSVIGPLLFILYVNDLPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IE72</accession>
    <name>A0A7D9IE72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A068877</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005228">
        <property type="protein sequence ID" value="CAB4005531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IE72"/>
    <dbReference type="OrthoDB" id="5972212at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4005531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="41874" checksum="AFEFB9BEEF821D3A" modified="2020-12-02" version="1">MDEIFDTLLLSYDDGLISDEELLLLQDYLCISPNRHSNFPSRDYNPFDWENLDELTCKVEFRFDKQDIPRLQEALQFPEMISIPHATDCPGLEALCILLKRFAYPVRYCDMVPMFGRSVPELCKITQYAINHIYNNHGFRLQSWNQPFLSPENLESYANAIHVKGSPLLTCFGFIDGTVRPICRPSVNQRIVYNGHKRLHAIKFQSICIPNGLIANLSGPWEGRMHDARILGESGLMQDLRQHAFAPDGTPLCLYGDPAYPLRVHLQQPFRNNAALTEDMRQYNKAMSSVRVSVEWLFGEITKYFKFVDFKQQLKIRLSPIGKIYIVSAILQNSLACLYGNIVSEYFEINPPTLENYFWRADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ILM7</accession>
    <name>A0A7D9ILM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066361</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006065">
        <property type="protein sequence ID" value="CAB4008242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ILM7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="11048" checksum="BBEA010B222C535C" modified="2020-12-02" version="1">MAMAAAPNWRSVFVFLTGNINDDGGYDGDYDGYDGGDDGNDGGYDGNDGGDDGGYDGDYDGDYDGYDSGDDGNDGGDNGNDGGDDGNDGGDDGNDGGDDGHGGGDDGNDGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IT05</accession>
    <name>A0A7D9IT05_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Toll interleukin-1 receptor domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009826">
        <property type="protein sequence ID" value="CAB4018048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IT05"/>
    <dbReference type="OrthoDB" id="5973944at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13676">
        <property type="entry name" value="TIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="32163" checksum="85557F2475442035" modified="2020-12-02" version="1">MDLSTLVVEPLSTSLNKSNIVITENYGLDGSSGFWWLKFTFDYMLEKAIAMRLTNFKYDSKGNIWTLEIEKCHYLSIKNADNRVSFDMEDELVNVNELKRLRGCAFNNEKLQDYLETNVVPLITKKIKYTKFAPQFRFFLSHKAKDKPLMRTFKAGLKFLGYSTWIDESDMPIVAHLPSALKISIDDCDCFVAWLNEEYFKSEYCTAELLYAKNRGKIILPFGVFSEIKTRLREDENLIFLEGLLISNPNEMSFFEVLRRIDETLFNFEKMALPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J247</accession>
    <name>A0A7D9J247_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061222</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010337">
        <property type="protein sequence ID" value="CAB4019189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J247"/>
    <dbReference type="OrthoDB" id="6152807at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="84"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="282" mass="32127" checksum="B2169D6729EE44B7" modified="2020-12-02" version="1">MNELKCLAFDRDLDFICITESHFSGDYTDAELDIPNYNIYRNDLNPSGGTCIYVHVRHTVQVLVNKSIRDFRSITVFLDTGKLHLVCLYRSPSSTVEQDVLVRNELAKLPSTNTDRIILLGDFNLPDVCWVTGSVKGPDNTTDRKLINQQEYLDCIVANGFSWHITNEITRRRFVCGELQESTLDQILTSDPDIIDDIIFGPPLGRSDHLTLEIRLKLYDDASYLTSVKYNWSKCDIAKVVYLGQQTDWFYSGVFDNSVDTQSQELLNKILNIVDNSVPLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JCB2</accession>
    <name>A0A7D9JCB2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089435</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014318">
        <property type="protein sequence ID" value="CAB4026639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JCB2"/>
    <dbReference type="OrthoDB" id="5970117at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00037">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.100.10">
        <property type="entry name" value="Mannose-Binding Protein A, subunit A"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001304">
        <property type="entry name" value="C-type_lectin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016186">
        <property type="entry name" value="C-type_lectin-like/link_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050111">
        <property type="entry name" value="C-type_lectin/snaclec_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22803">
        <property type="entry name" value="MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00059">
        <property type="entry name" value="Lectin_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00034">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="C-type lectin-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50041">
        <property type="entry name" value="C_TYPE_LECTIN_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="471" mass="54376" checksum="D6A25875892E0451" modified="2020-12-02" version="1" fragment="single">IYNYYCNESRWDEAKTYCSKRGETLLDFTDSEDLQYVKNLNASLPRIWIGLKKNKSDLNENVGNVEELFKIKLCEITNDDGPVSDRNAYNLLPSVCVKSLQDQCDVHWQKHGRQCFLPVYDRMSCFGALAHCKRLNGMLNAGNFAKALIFNASQNIGTPFFWTGKLKEIHIDPHAMWTWGDGSLFGEWNERKIIITDVGCNGCGFMKNGTIYLTSKCSQRISYLCEKDRKDHITSSFLNHRQLSWRFAKRNCSLLQLSKNVKDVTDVLPSGDTIIQENMPYWLGIHKNNTCKTHIVEDLANVTSKPTRCLYVENSYGNGRWESCDEKNHFICVKPEVICGSGWLVFNESCYRIEQSHELSWNDARRTCNEFGDYLLKIDDLSEQTIIINEIKRHYSSKYWIGFRHEKVKPLWQWIVDNTTAGFTNWIRGEPNASGKDKCVLILKSLMSHSVTWNAANCSRKFGFICERTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JEC5</accession>
    <name>A0A7D9JEC5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Mutator-like transposase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037026</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015166">
        <property type="protein sequence ID" value="CAB4027986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JEC5"/>
    <dbReference type="OrthoDB" id="5983233at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049012">
        <property type="entry name" value="Mutator_transp_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20700">
        <property type="entry name" value="Mutator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mutator-like transposase" evidence="1">
        <location>
            <begin position="105"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="48095" checksum="90D1D7B971B9A17B" modified="2020-12-02" version="1" fragment="single">MAEVVTVCVNPQCGKRTTWFSQPNFHGTKIAAGNFLLSYGIILAGTSATKVFRALKHMGMTCISLTTFFKYQREKLIPSIYLHWKKYQAELLDELKTKEELRNEVGSSPAMEYEGFCRSMEYLLSLVAVKTFVSDRHSSITKHMREKLSDIIHYFDIWHIKKKVTKVLTKIAKVSGCEATAEWIKPCTSHLFWSARTTHDGNGEVIWAKFSSFLSHIVDEHKNLENPLFNKCAHMDIIQPRKWLDKDSIAYEKICSALTNKRLKKGIMKASPIEQTSCLEGFHSVLNQFSPKMIGYSYKGMFCRHVIAVIHFNKNLSRQKRMKNGVEQYHIVYPKFMNGNAVVRNVPVKQNFDYVEEIFQTMVESIGTEKIKDAIDELNNQTPLPMNTMLDKQPREEAIAKKRRRDAMQLANVPPTNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHN5</accession>
    <name>A0A7D9JHN5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Wings apart homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A000132</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WAPL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016559">
        <property type="protein sequence ID" value="CAB4030009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHN5"/>
    <dbReference type="OrthoDB" id="78088at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039874">
        <property type="entry name" value="WAPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022771">
        <property type="entry name" value="WAPL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012502">
        <property type="entry name" value="WAPL_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22100">
        <property type="entry name" value="WINGS APART-LIKE PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22100:SF13">
        <property type="entry name" value="WINGS APART-LIKE PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07814">
        <property type="entry name" value="WAPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51271">
        <property type="entry name" value="WAPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="291"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="291"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4030009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="398" mass="44636" checksum="1738CB775C8220BF" modified="2020-12-02" version="1">MFLDMENLSSTTLARESLLSLTSQRTGEWFKEEMRKSGGLDYIVDLVLTSVVDIKDNGAELAQHEKGIESIKRCLKLIENVTFQNRENQIYLVSCRKSFLVVALSRLLRVCIHAITEDQPGLECCFFKIILDCVKSILRVFLNLTHDNDCESETIGQQDRLISTLLLCVLQVPQFVSMEEQFDILVLALGLLINLMEHSKQNIASLVVVKTRLSYEDSQSCKDSKESEKTERGKDVPAVEALVNLFQLRAQAARDSEAMNCELTNGQSDELKPTQDGLGWVCGEDIDVTRTEEPEVLEKSTTDDENKEEKSLEDEIGEALQKAGKHMEDSMVASYVALLLGCLAKDNNANQNLIRQLLPENNFDVLINTLKTFLGFMKLTSGTTGQAIEKIIDVLKNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JSM2</accession>
    <name>A0A7D9JSM2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cation-transporting ATPase 13A1, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A088487</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020587">
        <property type="protein sequence ID" value="CAB4034980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JSM2"/>
    <dbReference type="OrthoDB" id="48943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled monoatomic cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015662">
        <property type="term" value="F:P-type ion transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006874">
        <property type="term" value="P:intracellular calcium ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006544">
        <property type="entry name" value="P-type_TPase_V"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45630">
        <property type="entry name" value="CATION-TRANSPORTING ATPASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45630:SF7">
        <property type="entry name" value="ENDOPLASMIC RETICULUM TRANSMEMBRANE HELIX TRANSLOCASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13246">
        <property type="entry name" value="Cation_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="Metal cation-transporting ATPase, ATP-binding domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-1278">Translocase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4034980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="21327" checksum="46E59203F5F52BC6" modified="2020-12-02" version="1" fragment="single">TADPRRNRYKLFLECTLILTSVVPPELPIELSLAVNSSLLALSKLGVFCTEPFRIPFAGKVDICCFDKTGTLTSDNLVVEGVAGLSESQEECFELSDVPNETLQVLASCHSLAYVDTNLVGDPLEIACLSAIDWTLTKGDIVMPKKGKKQSLRILHRHHFASSLKRMSAVVSVQSPGSSASTYIATVKGAPETLRSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JV01</accession>
    <name>A0A7D9JV01_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073929</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021281">
        <property type="protein sequence ID" value="CAB4035684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JV01"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="55" mass="6190" checksum="FE36B407C5ECFC29" modified="2020-12-02" version="1" fragment="single">IIPTALEIIKNVSNLTFSYEDASDNTEQLKKTLIGNSYRIKGNQLIFPCLSMNTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JX09</accession>
    <name>A0A7D9JX09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon-like family member retr-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022748">
        <property type="protein sequence ID" value="CAB4037114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JX09"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001995">
        <property type="entry name" value="Peptidase_A2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF19">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50175">
        <property type="entry name" value="ASP_PROT_RETROV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="403" mass="46373" checksum="15BF70CCF0E0E356" modified="2020-12-02" version="1" fragment="single">MAEQILAPKPLKLDGNAAENWRRWKKAFELYMTATEKDKKSQKIQCATFLTLAGEAAITVYETLTFEDTEKDKIEPLLAKFEAYSLPKENVTHERHVFNLRKQKPDESVEQFVTELKRLAKNCEYGELTNSIVKDRIVEGISNDRTRARLLREKDLSLERCMDVCKAAEVADKHMKTLTDKSRKSEEIDAVYSRGRNYRRETHSGLTGNGGKDKKFYNNRLNCSRCGQGNHSYDKCPAVRKECRNCHKKNHFMSQCRTRDKELPKYPRKYRVDAVENNGKQERDAEPSSESSDEHEFYVYSTETTADKSDPWILPLEVNNSIVTFKVDTGSDVNVMSYNEFKTLQNRPKLKQSKTKLKAYNGGDVQVQGQCILSLKLKEKSVKALFLISPDDVKPILGRELSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JZ91</accession>
    <name>A0A7D9JZ91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Scavenger receptor cysteine-rich type 1 M130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A036247</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024211">
        <property type="protein sequence ID" value="CAB4038441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JZ91"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004622">
        <property type="term" value="F:phosphatidylcholine lysophospholipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383:SF5">
        <property type="entry name" value="SGNH HYDROLASE-TYPE ESTERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="2">
        <location>
            <begin position="87"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4038441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="27740" checksum="80FFBF29E6D51BEF" modified="2020-12-02" version="1" fragment="single">IKENDWTRVKEGAASRARAEGNDRDCFVVENPNRYSILNDEATSDQETTRSAQTESMKENHPRKKKSGERKPDDPTTDHETVIVVGDSMIKHLNKGRLRRSVAKKALKISTESYSGANCDAMKHHIRPCLAKNPDTVILHVGTNDMAQKNAKEIAKGVVEIGNIIQNQSPNTKVVISELITRTDTPEKRRKVAEVNAVLLTNCKKNKWGHITHANIQAKHINPYGIHLNRAGTPMLAKNIISFLNEQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K1L7</accession>
    <name>A0A7D9K1L7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055741</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026227">
        <property type="protein sequence ID" value="CAB4040066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K1L7"/>
    <dbReference type="OrthoDB" id="5967206at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20009" checksum="B446442FBA8706E2" modified="2020-12-02" version="1" fragment="single">MLLALASAGRSSELRALDLRFMTMTDSSIIFELGRLTKSRKKGQKPIKLIFNSFQSDPLLCVVSAITSYVDRTKRWRSVLAQTQLLLSFVEPHKEVVPCTIAGWLVGLMSEAGVNTSEFSAHSTRGASTSKAKAKGLSCQEIMNKAKWKKESTFKRHYLRDVTAEATVGQDGFQETVFQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K6E7</accession>
    <name>A0A7D9K6E7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072367</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026917">
        <property type="protein sequence ID" value="CAB4040524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K6E7"/>
    <dbReference type="OrthoDB" id="5982756at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12908" checksum="68C70D889734C629" modified="2020-12-02" version="1" fragment="single">MPVKLKHKNNIQKLWFSKKRNDVIRKISAKEEAIRGQLYAGIDVITGHGVGLSGASLGVLNMLPYIHAFDTKTGMPYVCDPDKKKPDKKIDNRWKMIVPPCPDFKKCLFPWNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K9L2</accession>
    <name>A0A7D9K9L2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pteridine reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A048391</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029948">
        <property type="protein sequence ID" value="CAB4042350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K9L2"/>
    <dbReference type="OrthoDB" id="1933717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.560">
        <property type="entry name" value="7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035907">
        <property type="entry name" value="Hppk_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43639">
        <property type="entry name" value="OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43639:SF1">
        <property type="entry name" value="SHORT-CHAIN DEHYDROGENASE_REDUCTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55083">
        <property type="entry name" value="6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="16824" checksum="EA3ACB2DC6203C28" modified="2020-12-02" version="1">MTSEDIPYVIPDPDILSLAHVIIPLADLTPDFMHPVEKKSLSSIAVELCGKNFTSYFPIVDIYDANNKELTNGNFSALADGSVDYEKLQNGKIPGKSGQHVALITGAAKRIGAIIATKLHDMGYHVMIHYNTSQDEATSLEQKLNRYHFSTFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KEX3</accession>
    <name>A0A7D9KEX3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A011126</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033169">
        <property type="protein sequence ID" value="CAB4043784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KEX3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="412"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="457"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="482"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="219"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="239"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4043784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="503" mass="55930" checksum="FCFCB36E06D820F5" modified="2020-12-02" version="1">MEDYDDHDDIELEEVEKSYPQYDDLNYDDLSTAFNELDTRVKDEAMYGSDPIVITNLKSELDYVKGLMRSREIVSSIRESLQEIAKLKEQETTFTEGSDGTVNISGPSGSTTAPGVDFVEDPNNVLPDVLDAFNESFDTRWDEIEARLDKISTAGKKSDFKNQVERVQAVARVIKNKEGLILDPKNKYVRELIKRSSVRTLKDGTEVLVFRSEQGIEKSGTQIMKRGKTRKPVSSKDSPALREYKDLLKKIKQAPTDPDARITSEESVYEDSREEPQFDDSDEEYADRENIELIDISAKLGDLPGLTMQENNELRGVLNPADGSSIKGRTGPNGALQIQADYFNEAIGETVERATSAEGTTEYNSLIERIDSLKEARDRTLEQRTVEEAREAQLKDISRLRRFIDWVGKEKVGLVGIAVSTASLITALLIHARGAIVKTAKVTGKVAKALANLAKKAGPILVPIINAVATALSWGAKGIAWLTSHLWVLAIAAALMVYNYYTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KY47</accession>
    <name>A0A7D9KY47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050733</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012148">
        <property type="protein sequence ID" value="CAB4022768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KY47"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="188"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26670" checksum="2539BB09850EE569" modified="2020-12-02" version="1">MEIVQLTLRNQTCRLHQLRTRSDIQLIRTRLGSTNTCSFPQPFSFIYITIKRRQFLLLTRSNLAIPYIGAVTRIEELTRIQATRRAHKGHVTRLVKKTSEVLTNEKPDEMLLSSLNTFLEQLVRKRDLIWELDQKIEAKSTDTKGLETEIFEAEELSCDLEEKINHIRKYIDLSISALNNPSTVFTQENTGSSLPSVSQNTCTEPSSAAADRCTVSDTRSINPRPSPHYKLTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8P2</accession>
    <name>A0A7D9L8P2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015175">
        <property type="protein sequence ID" value="CAB4027996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8P2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15609" checksum="93D1D7C964740BAF" modified="2020-12-02" version="1">MGYVDDHIHLTLATDSHATVDQLAESLHNNLRLNNNRTVRVRYNDREIESFTDAARQMSFLPTLPEAAEVMRRVLRNETPQPDTPEEEDVGLISSVDITALDEVTPRQCERIVRRSLARNGLEAREARDPRDNEME</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L9R6</accession>
    <name>A0A7D9L9R6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A036197</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015124">
        <property type="protein sequence ID" value="CAB4027916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L9R6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902495">
        <property type="term" value="C:transmembrane transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052076">
        <property type="entry name" value="TRP_cation_channel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47143:SF1">
        <property type="entry name" value="ION_TRANS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47143">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0407">Ion channel</keyword>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4027916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14550" checksum="4F4CE098F12D1E9E" modified="2020-12-02" version="1">MYGRKLFYIKLFIFLIFLLFLTGYVIMATPSQGGTDVDGELVNCTLNEDSGTVAFDVFVDSGRYVLLILACLHIIFELFQMVYQRLHYFTDYTNYFEVTMYVSTVVYVSADFDLSFVSESDVLSGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQR6</accession>
    <name>A0A7D9LQR6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Deoxyhypusine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A075782</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the deoxyhypusine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024496">
        <property type="protein sequence ID" value="CAB4038710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQR6"/>
    <dbReference type="OrthoDB" id="294378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034038">
        <property type="term" value="F:deoxyhypusine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.910.10">
        <property type="entry name" value="Deoxyhypusine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002773">
        <property type="entry name" value="Deoxyhypusine_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036982">
        <property type="entry name" value="Deoxyhypusine_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11703">
        <property type="entry name" value="DEOXYHYPUSINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11703:SF0">
        <property type="entry name" value="DEOXYHYPUSINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01916">
        <property type="entry name" value="DS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4038710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="72" mass="8345" checksum="79BEFD226B7206DE" modified="2020-12-02" version="1" fragment="single">MLLEQKKEKINWTPSKLIDRLGKEINNPESVYYWCHKNQIPVFCPAITDGSIGDILYLHSYKNPGLILDLVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LX65</accession>
    <name>A0A7D9LX65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072467</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026181">
        <property type="protein sequence ID" value="CAB4040026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LX65"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="390" mass="43577" checksum="BD4915C1C9202E90" modified="2020-12-02" version="1" fragment="single">MFLFLSDTCQALGCHVKPLWRIFSTQSVWKDSSVQEVSLRCVDSLLKTGGLNFEAISDDLFTVVISCLQDITPGDNESARSEANCKLQKSLASVITTAIKPRTGHKRIPLVHVNSLAKAVCDVTREFDAVLCRELKFLAKCLSELVLSDLRQRKQAENNTIKRQKLEAMDIDLPENKIHVETFQDICTKYKLQKTTLNYLYLGFTHLFGVLNEQAMSQRSCAALDGLTLVFRTLVLLIEKPSVLGESILSIVTEVTNATILELKSAMLTVLDKLSSSMVRSIDGGDTVNGIMRTLLDLIKLLLYSHKHIAVSRELLNLSTCIASLPWIVKVNPEYATMVPCGNGWNLAKLKQLSSVLAKYMDPGTCLEVLTMFPPELMTKWKVHVFHETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZG5</accession>
    <name>A0A7D9LZG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Zinc finger BED domain-containing 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A061930</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027457">
        <property type="protein sequence ID" value="CAB4040911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZG5"/>
    <dbReference type="OrthoDB" id="10057873at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052035">
        <property type="entry name" value="ZnF_BED_domain_contain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481:SF10">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="220"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="225"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4040911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="367" mass="40652" checksum="D3EE4D9F6DF28ED7" modified="2020-12-02" version="1" fragment="single">DAMKPDVQRAVNDARTHCEKIITKTKQSMPVARAFRAAKDALPRGEDGKPEETGGLVKNVSTRWNSNLAMFRSFIKNKDAVTALLRRARELELPPLPASLGNRANFWNILDGLVKVLTPFEDVTLQVSKEESSLGECIPYAQTLLRSIEKLEVPTDDELPVTGLSTFLTVLKEGIQDRLINDQARTWKIATFLNPRFKLLLFNAEDHVSVREAVLREMSDDGTANAGSVGNPPQYTGRKGSLLTTLSDIVHERIENSGGHTEQQPGRSGVISKSQEISAYLSEPVLPVRSPDGKANLEELGGYWYRHKNLWPSLTRLALSYLSCPPSSVTSERVFSLAGNIVTKKRCALLPGNIGKLAFIKFNNKKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M312</accession>
    <name>A0A7D9M312_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027243">
        <property type="protein sequence ID" value="CAB4040783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M312"/>
    <dbReference type="OrthoDB" id="76385at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="372"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="377"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="46915" checksum="1FC38ACC2D4EE22B" modified="2020-12-02" version="1">MFHKLCGELPPRVENFVMDVQEFEYEIVYRPGKTCIADYMSRHVDRAGSSRVFEIEAAAESVVESGCCHALNEQGTVTVEDIRAEGERCEVYQRLVKAIKSGISDNDEDLKPYIVPEIKHDLSVVNGVYVEMDFQGPYPNGEYIFIMIDRYSRWPEMAWFRNAPNANTTIAAMEKIFTNKGVPAVCQSDNSSPFQLKEMEQFAQSSGYRHHHITPEWPRANGTVERFNRSMKEALQAATREGISLRDASQRFLQMYRSTPHSATGVSPHAALHGGREMRTVLPLMTPTDHVMDRIRDQRYKAKMRNRLRPHKLRVGDSVIVKQTKVSKLTPTFNPTPLRITEVQGSRITAREINGTWIITRDASYFRKIASDTRADNEDDQETPDESTEKGQRPRRTTRRPSYLEDYDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLV1</accession>
    <name>A0A6S7FLV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Adrenocorticotropic hormone receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A086440</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000021">
        <property type="protein sequence ID" value="CAB3976936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLV1"/>
    <dbReference type="OrthoDB" id="5960696at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246:SF27">
        <property type="entry name" value="ADENOSINE RECEPTOR, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246">
        <property type="entry name" value="OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 10" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3976936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="342" mass="38787" checksum="702A184037F254C0" modified="2020-12-02" version="1">MPYFQGLFEKRCLTIGAPTQLSFFTTAFSILFTILNVPGNFLVILAVAKDPYKNLRTPFNYLMANLALADLIVGTVTDPMSIYNHWKEGINAKLLKREVQIFHMSYFISCTASVLSLATLAVERYLAISNPHTYRNRFTTKRVFATAGCIWLVSFTIPFIYFEVGTVTYAFIFANTAIVLAIAITCFTFGLMIRAFQHRARSDAPIAITNHNVEHENSTTHAVGRNAQSQTAAKWERKVTKMFLVVLLALLCCYGPSTVFIYAMSFCESCSCTALHWFRDLQFLFVIMNSSVNFFCYALRSRRFKNAFAHILKIKRMGEAEPVSNSGTRFTHCSTDRIDTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FMU8</accession>
    <name>A0A6S7FMU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040501</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000359">
        <property type="protein sequence ID" value="CAB3981174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FMU8"/>
    <dbReference type="OrthoDB" id="8048764at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="28876" checksum="8928BFF8D37C3FCC" modified="2020-12-02" version="1">MSVLSLSQGGLIIDHSAITFDIATTFKARPKIKRSVFDYNRGNFDGLRATLESVDLCGAVESAVDINHGWLKWKELFLSGVRGSIPIKTISNVSNPPWINDPDSARSASFPRDIAELSNDYFSSIVSGSENTTPTDNPSSPTDCNLSELTLSPDDVAAALHGLDINKATGPDEIPPRILKECAHQIAPSLCLLFKQSLRHGSLPEKWKLANIIPVHKKGDISNVENYRPNSLPCVTSKILGRCVLRNLRDYLMSLITVTPLNLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FMZ4</accession>
    <name>A0A6S7FMZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A036664</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000097">
        <property type="protein sequence ID" value="CAB3978233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FMZ4"/>
    <dbReference type="OrthoDB" id="10667345at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002038">
        <property type="entry name" value="Osteopontin"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00216">
        <property type="entry name" value="OSTEOPONTIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043590784" evidence="2">
        <location>
            <begin position="20"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="83"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="205"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="249"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="285"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="309"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="343"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="40118" checksum="1F036AD8DDBFE151" modified="2020-12-02" version="1">MKNTLIACVVATTLVYCFAELTVEKPDDDKTKRAIDENLGFGGANVGAGTAAGQTTNVDPSLGGAATASMNAGTTAPVDSTNAADTANAGVPAAAPAEGSEENHDAADNDDEDNDDDDDDDDDYDDDDDDDDDDSDDDDEGDEGDEGEESRAKRSADDDDEGDDDDDDDSDDDDDDDDESDDYEDDDDDDSDDTGDDDTSDDEDAQAKDDDVKEMDSDAKDGKDKQAKVKRSADDDKEDDKEDDKKDDDKEEDEKKDDDKEDDKEEDKEDDKEDDKKEDDEEEHSDDKQEDESKEKPKSKRSAEEEEKKEEKSEDKSEDKEKTEDKEEKDDDASKHSDVAQADSDDDAADDDDDDADDDDDDDDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUR1</accession>
    <name>A0A6S7FUR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070091</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000600">
        <property type="protein sequence ID" value="CAB3983318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUR1"/>
    <dbReference type="OrthoDB" id="6764166at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="32826" checksum="6D5A84EB75745550" modified="2020-12-02" version="1">MGSVHSEVFTVSDATTINTTSGVGGGAREDSIANSPSTQQHPVRAASPKEGGWPTSSSKFTSSKPVVTVRELAKVLGHLTSTIQDVFPAPLHFRHLQECKNKALGLSHTYEHPFKLTIQAKEELVWWRDNLDAWIGKALVTGRPDLVIETDASQMGWGAFCMGTSTGGQWSQAESSLHINCLELLAGASRLEARPAGVFHNKSVVRPTRELYSGTNSTAPLSRPLNTPDGDASITQSPTSRLAAISQSYTQAGISQPAQELLLVAWRKGTATTYASAWRKWDSWCCEREISSVHAPIEAIIEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZW9</accession>
    <name>A0A6S7FZW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056857</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000213">
        <property type="protein sequence ID" value="CAB3979610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZW9"/>
    <dbReference type="OrthoDB" id="5993444at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="312"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="312"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="622" mass="70139" checksum="A4B5AC95C793BD60" modified="2020-12-02" version="1">MANDTELIGSFIWGKPQKNLSKFLKQYQLPQIVRVVDGFCGKNEETSINNEQILAFHEICSVQKLLGTDSSGKQVIIPLTCPTQVLVCPSKCKYTPCKVEDFKSIFPKLQYVRVKSCGPQSRNASDILQRSLKVGDILQIQKIDKKKKSVVCQNTDTKGEVTLSYTSPAIFTPLLDSRKYTLSEVVINYGLHSRVCFETTRSQAEQNLDQWNSSLTGLTEVVFHKVLTEVKVIATTVGGGLGELTHCIGLPTDLPIRCAVAERFTKNGRSYEDFVCTLHAGFDSKNLSERVNVFQDINAVKIYDLTSSESMATVRQNQRDTLPSLVRSNAARNPPKVSPKPKKRIRESPNDSKYSLCDPKQPSQSPDDCTMTAKVHDEPARNSPEVGTTAAEVYGKLSQSRPEDRATTDEEGYVDTSFFEKHIYEYVDCEKDKHSVDNQNNLGMYFSRKYSHLTGNATDVNAPSTPKVQDHLRNKGLQQQAPFNQPEINSKHSQGYEEVKPVQAPFNQPEINSKHSQGYEEVKPVWNSNSKQEFADPNLIHNDKNKEQLSENHSDYVIPMISPNVRPQTRKFVKHKRTDAKNKPSNTGYENVEFAREKQNGQRKHAYENVVTNVGMGFKFQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G059</accession>
    <name>A0A6S7G059_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052818</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000825">
        <property type="protein sequence ID" value="CAB3985085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G059"/>
    <dbReference type="OrthoDB" id="10234324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="441" mass="51066" checksum="CCD5751FCE62A49F" modified="2020-12-02" version="1">MKRLVETRFIRYLVGSIDALLTNAYVLELMWQEQSAGGDMDVQGHLKNLVNPLFLPTLVILADVFSQSAFASETAQSDIYPLWDDKANIDKFLCNIKRMNDLPVLENPLNRRLRLHHPSIATGHFTPDANKPDQQVNIMQYDVRFQPRLRNQQHRQQELTPEDIIETVEVRVKQLTSAILRESVTFLAQGEQERDIVKIFDLKSFDFHDPGSLSQQFNDEFVSVASHLDKGTLLFPRNLCSPLCGGVKCLCLLNQFKTFKERVRDNKDRFRGVWFVVNEAGQVKWNITTVLSYFHKIEYALHEDIPDLAEIIEICLVMSRSQSDMERAGKLMKDVSDKRFGGKFNEAHHEKGKRDRVNEETFLYGNYVPLHSLPLHEVSQEWTKKHLPPIMKTNPGKESSTLRTLENKEPNVRFWFNSFTAIGDFCRHYGRLPQATLVDKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3R8</accession>
    <name>A0A6S7G3R8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HEG-like 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029528</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001010">
        <property type="protein sequence ID" value="CAB3986395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3R8"/>
    <dbReference type="OrthoDB" id="5956155at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="356"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="144"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="359"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="822" mass="92366" checksum="B10C88F68C1B0604" modified="2020-12-02" version="1">MTDQLERKKATRRGNRAVITKYSNKAKELLANGENIDENTKDLLDVKKQISKFFAKKIDDTGKVPIHDISIPGQNTPQVEITEVGEISSEVNVNNETINEQDNVNSTQDPTPSNPTLIHPDPSSPTTNQSSGNYVIVQKSLQSSSYGTSSSTPTDVCPTNPVTSVNDSDRVAAGKRVMSYDDYRKSKGKQWKSLVSKSGKSKTQEFDVTILISLFEWNLKEAKLKPKRGKRMTLVVSNTAPYASILKKAVEKWRAFHCDCFDENEDYMLLLENCKEALFLPGSHKEFFSLKRYKEEVGKDYAKIVLYLCTRRDYDMSEGYESEEDDTTCSSSHTASRNHKMEEYFNDTICDPVHFGPSTEKRSKLEPGRDLSKTDIENQIMNDETLAREMQSELDETHQAIIELDVDNESKESNETDSTKFTDIPHLVTSLEDHVDKSSQYFLVIRRGITFQRLLLLWQRECKKTSPEKVFRVKYIGERGIDSGAISKECLTKAISDMGTSMFHNGAPIDSVYNIHNGQFRSCGEMVATSIAQGGPPPRFLHENVFKMLVNPDVDVANLNPDEHLTDDDQQLISRVKNDVSAHKNTIIDSGYTGVIDEDHKDDIVGTMIVNIVGKRLLYLKEFAEGLKLFGLMQAIRDNPDLTKTLFVVGNDAVDANYVFSLMCPQYSPEGSSKRVHEDKIMDNIQDFLFGLEDESVTGYAEAISWAADLPEEYSAELRASHEDVVDKGITEKFEMANLTPAGIFGWLTGQQHKPLNGIPLSIIVEFDHECMSRNSKHTICFPTVGACAKVITFPVAHMTDSTEFRNVFLLAYCKGGSFDNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6J5</accession>
    <name>A0A6S7G6J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043283</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000990">
        <property type="protein sequence ID" value="CAB3986273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6J5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="15296" checksum="FDA65EF14A77711C" modified="2020-12-02" version="1">MQKIFDGYEFYFMLKKQTHTQVHILMKRIEEQGGVITDLQRDTTTHIVTSKGSMSANHIVNKDCTPQQYHLCVDWIAECLKKGLQVPNEGFHVQLALEDEHPCKFLIMNPHPKGKKQSQKISLHVTPNIIHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8Q9</accession>
    <name>A0A6S7G8Q9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 13">Uroporphyrinogen decarboxylase</fullName>
            <ecNumber evidence="6 13">4.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A067708</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>uroporphyrinogen III + 4 H(+) = coproporphyrinogen III + 4 CO2</text>
            <dbReference type="Rhea" id="RHEA:19865"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57308"/>
            <dbReference type="ChEBI" id="CHEBI:57309"/>
            <dbReference type="EC" id="4.1.1.37"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="12">
            <dbReference type="Rhea" id="RHEA:19866"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 14">Belongs to the uroporphyrinogen decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.37" evidence="6 13"/>
    <dbReference type="EMBL" id="CACRXK020000867">
        <property type="protein sequence ID" value="CAB3985392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8Q9"/>
    <dbReference type="OrthoDB" id="339900at2759"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004853">
        <property type="term" value="F:uroporphyrinogen decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00717">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.210:FF:000001">
        <property type="entry name" value="Uroporphyrinogen decarboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00218">
        <property type="entry name" value="URO_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006361">
        <property type="entry name" value="Uroporphyrinogen_deCO2ase_HemE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000257">
        <property type="entry name" value="Uroporphyrinogen_deCOase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01464">
        <property type="entry name" value="hemE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21091">
        <property type="entry name" value="METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21091:SF169">
        <property type="entry name" value="UROPORPHYRINOGEN DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01208">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="UROD/MetE-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00906">
        <property type="entry name" value="UROD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00907">
        <property type="entry name" value="UROD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 13" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="10 13" id="KW-0456">Lyase</keyword>
    <keyword evidence="11 13" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3985392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="41206" checksum="A9237246D6D74253" modified="2020-12-02" version="1">MSKNFQKDFPPMKNDLILRAARGETTERVPVWIMRQAGRYLPEFLKFKEEHGNDFFHIVQTPNLACEITLQPIRRFDLDAAIIFSDILVIPQALGMTCEMVKGKGPHFPEPLREPEDIKKLNENVVVEETLGYLMDAITLTRHKLEGKVPLIGFSGAPWTLMAYMIEGGGSKTTSNAKKWLYKHSEATSLLLQKLTNVIVDYLVAQVRAGAQMLQVFESCAECLSPYLFTLYAFPHLEEIAVRVKQRLGKDAVPMVIFAKGASYAIRELSQSSYDVIGLDWTVPVEDARLQAPNCVLQGNLDPCGLYASKDDLIRATKSMVRSFGTKKYIANLGHGIYPDMDPEQVKIFIDTIHSYSESLNNQQKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLQ6</accession>
    <name>A0A6S7GLQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026809</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002158">
        <property type="protein sequence ID" value="CAB3992958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLQ6"/>
    <dbReference type="OrthoDB" id="8906575at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="22288" checksum="918B19A8EF53FA6D" modified="2020-12-02" version="1">MDIVKTLNCNRAIPDLDSLTTNLVESCVKDTKENYQRFWRHKLENSSKLTFYTSIKEDYELETYLTTITYSNQRKRLTQLRLSNHKPMIELGRYENIPREDRICKVCQAGEIETEHHFLTSCEAYSSLRENFLNNLESDPTNETDLNEHSLSVEIMKSTDKETVIKLSKFISLCFEKRSKCLEARNADSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSP1</accession>
    <name>A0A6S7GSP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002590">
        <property type="protein sequence ID" value="CAB3995048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSP1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="13018" checksum="747A0827E1177A7A" modified="2020-12-02" version="1">MFDKNGYAKEAHRHNIAMENLTAEREKYLEEVTDRRNRLAKLKSELVEANRDINATNKSLELVRRIIELTRKAMPRRPQLSNHYKPSSEMEEYMAIFGLIIGGVVGGAAYLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUX1</accession>
    <name>A0A6S7GUX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036842</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001307">
        <property type="protein sequence ID" value="CAB3988331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUX1"/>
    <dbReference type="OrthoDB" id="8196283at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19492" checksum="2F7909315533CAC6" modified="2020-12-02" version="1">MISHLLRTSVFSQFVTQYKLVNNKIVTQSPNVIPRYFPSYSSNPKGLYYPLYCKYQLLKYKPWKNSQNDAWNYETPSDAVYANAWLAFLNSPVASKCVPNWEKQLENVLDNVVQKSDGEFHSENENKSIVQEEWMILSTYHKLNDNHKNVKTCTIGNWTLQSTQLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZJ4</accession>
    <name>A0A6S7GZJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Centrosomal of 112 kDa-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000382</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003440">
        <property type="protein sequence ID" value="CAB3998794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZJ4"/>
    <dbReference type="OrthoDB" id="78101at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055310">
        <property type="entry name" value="CEP112"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027831">
        <property type="entry name" value="DUF4485"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18871">
        <property type="entry name" value="CENTROSOMAL PROTEIN OF 112 KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18871:SF2">
        <property type="entry name" value="CENTROSOMAL PROTEIN OF 112 KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14846">
        <property type="entry name" value="DUF4485"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="226"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="266" mass="30032" checksum="38F66A052BBA9C5A" modified="2020-12-02" version="1">MAASARKRDGRNVRGSSATEKLDEIFNNFVDCMKPFVLKLAKKSERQRIAMWIKKLCEPPGTSLLSRKNRNMYAQVLLAMLKRDLIEEPFSQQPEAGPLPTMPAYMSIYADDPTVQSSLSEQEVEDINTPSWIRGELESTSDSYQDDSQHERNHSRRSSSNRRTPVYESQGDENSLGSSYSGSLRNHSTASDNGELARSPYQAKRISGGKVRYEPVYLREILNSDLGYPTSTPTKAVSKMNGEHSSYLSQTREIDKIEHEAKIEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H207</accession>
    <name>A0A6S7H207_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="5">5.6.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A029472</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020002935">
        <property type="protein sequence ID" value="CAB3996742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H207"/>
    <dbReference type="OrthoDB" id="5977677at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF105">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE Q1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0347">Helicase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEAD/DEAH-box helicase" evidence="6">
        <location>
            <begin position="23"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3996742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="18966" checksum="7CD4CE1E6BEAA0F2" modified="2020-12-02" version="1" fragment="single">MEILNRIHIALHNAGMANRILKPQQIQCFDYICKGHDVIAVLPTGFGKSVLFQLLPDILPTKTTINIVIVLCPLSSIIEDQLHSLKIMSINAGVLPSRYENENCETLFNNEDMGMAADIHLPDDLVNGLTSIVFAHPEDLLSDVGRKLMKSDVYQKNVVACVIDEGHCVEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4E9</accession>
    <name>A0A6S7H4E9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072456</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003125">
        <property type="protein sequence ID" value="CAB3997546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4E9"/>
    <dbReference type="OrthoDB" id="5979088at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="50"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="634" mass="73623" checksum="3AF3EF3B5A5F28D8" modified="2020-12-02" version="1">MSAEKDANSPSRDTKNTERTRSVNFNNFIYVNCTREQKTYFMPINFCLLNTRSINRKELFINDYVSENDIDILAVTETWLREDDNEFSTAEICPTGYHFYHITRKNARGEGVGLLLKKYIKVKKQSQRKFSSFEYMDVTLNCRNTYTRMIVIYRPPPSKTNKLSSSIFFEEFCIFVEQLIILPGNVLMAGDFNFHIDNIGDSDTIKFNKILESFNLQQHVNGPTHKKGHTLDLIITRNEDKLVTGIRIHDPVISDHLAIHCTLQLEKPPLEQAEIYYRKLNNVNMDSFNEGLKVLDLNDDYDLSVLIDKYENTLKETLQQHAPQKRRIITLRPLSPWYNEEIGQEKRNRRKLERRWRASGLYIDRQLYVKQCETVNAMIKNAKTTYYSSVISSNAHNQKVLFSTVDKLLHRKPEKRYPTASSTTELVNKFSDFFNNKIAIIWKELAIDSSHCNQRNQEEQYAQCVKFINFQEITEHEIENVIDKVGKKSCELDPVPAKIFQGCQKTLLPIITKISNKSLQSGCMPEILKEAVLKPKLKKDSLDYEEYTNFRPISNLKFLSKVIEKVAAGQLLEHLANNKLEEPFQSAYKRFHSAETTINDILVAIDNLQRANKMNPAESSLVVRSRKLGRDAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HA84</accession>
    <name>A0A6S7HA84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004020">
        <property type="protein sequence ID" value="CAB4001179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HA84"/>
    <dbReference type="OrthoDB" id="5987296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="464"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="464"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="499" mass="57817" checksum="81055B9F1BCE7E07" modified="2020-12-02" version="1">MEKPNSDKLRICLDPRPLNEAIKREHFKMPTIEEITSTRVAGARVFSKLDANHGYWQIPLDEESRLLTTFNTPFGRYCYKRMPFGIKSAQEVFQKRMCQSFGDLEGVETDVDDILVWGATVEEHDERLMNTLQRCEEINLTLNKEKCEFRVKEVTYIGHKLTREGVKPDEQKVKAIKQMPPPEDKKGAERLLGTVNYLAKFIPNMSTIMQPIREVMKSGVEFQWGGAQEKAFQEVKEILTKAPVLAYYDVKKPVTVTCDASKSGLGAALLQDDKPVAFASRALTDAETRSAQIEKELLAVVFAFEKFNQYTYAKAVEVETDHKPLVSIVKKSLTSAPPRLQRMLLRLQRYDFTLKYRPGKEMIIADTLSRAYLTDDDVDSSKMNEELECYVHTVTSRMPVSEERLEQIKKETAIDQTMKTLFSTIRRGWPETRKQTPCEIQDYWNYRAFRSRWNLVEARQDYHTPQYERKDARKNTRESHGHREIQTTSKGHYVLAKNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HAQ3</accession>
    <name>A0A6S7HAQ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050682</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004476">
        <property type="protein sequence ID" value="CAB4002885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HAQ3"/>
    <dbReference type="OrthoDB" id="10057701at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17920" checksum="F93958F0127EF9E1" modified="2020-12-02" version="1">MLRVMMNCSRILPWEKVVKKVEDFLLRMQYSGYDKKFRYEVVASALNAYRVRKEANKSGERPMHRPKGWNNEERTKEKIRKKKNCYTKLRSQLQREYQQEIRNLGFNIKVVEKAGNTLKRMLQRLDPFKLENCGKSVYNGGKKDLVVDIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HAS8</accession>
    <name>A0A6S7HAS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004248">
        <property type="protein sequence ID" value="CAB4002064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HAS8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12750" checksum="7818B2B4CA95B6FB" modified="2020-12-02" version="1">MAVGLIQRNHKQLRKADVTPQAFNKTNHEELEIVSLPDETLPSSIALPTETTEEQVTALPSPVVETQPAPLRRSTRIRKSPKLCLFELHIIVLKKMCKKKDFYKGKGVDRLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIA5</accession>
    <name>A0A6S7HIA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Steroid 17-alpha-hydroxylase 17,20 lyase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A083629</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004519">
        <property type="protein sequence ID" value="CAB4003033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIA5"/>
    <dbReference type="OrthoDB" id="3934656at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004508">
        <property type="term" value="F:steroid 17-alpha-monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042446">
        <property type="term" value="P:hormone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042448">
        <property type="term" value="P:progesterone metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289:SF1">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE_17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7 8" id="KW-0349">Heme</keyword>
    <keyword evidence="5 7 8" id="KW-0408">Iron</keyword>
    <keyword evidence="9" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 7 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 8" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="442"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4003033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="506" mass="57486" checksum="F782688445B28795" modified="2020-12-02" version="1">MMIIEVFVTLFLVWFIWYFITTYIERKKMPPGPFPYPFIGNIPQIFSADRVTPFSKLADKYGDIFTVTFPNGNAVILNTASLAREARLAPGRQEVLLGKSPESFYPFQEIMGHNMAGSDYSLAYLFERKVFVSAMHIFGAGIERASVRAGRAVDIAIKEIENKPGRSFLPKNLLESSIVVQLLEWLTSKKIALDDPIVQEIYEFNAIMTRGALPLTMYQLFPFLRYLPTQLSREIKRAQQIRENIFPLEYRAHRDSYIPGTVRDLTDSFISAYEKELAKEIEKDIGSKDSGIPGLMVNVVAVGSETSSTWLTWFFLYNVLYPNVQSKIHEELDAVVGRDRLPNWKDAENLPYLQATLCEVARASGMATLAGTNAIRDTTIAGYHIPKGTFVCLNLPKVHEDNREWPEPEKFKPERFLDEDGKFVGWNKLHGFMPFGIGRRECPGQTLAKIMLFSFASILLHRYKIELPEGAEIPTTKVSTPQLATKPNDFLVVAEPRELGLLQDRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNY1</accession>
    <name>A0A6S7HNY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="18">Retrovirus-related Pol poly from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A046944</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The aspartyl protease (PR) mediates the proteolytic cleavages of the Gag and Gag-Pol polyproteins after assembly of the VLP.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005880">
        <property type="protein sequence ID" value="CAB4007695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0229">DNA integration</keyword>
    <keyword evidence="16" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="14" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="14" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-1188">Viral release from host cell</keyword>
    <keyword evidence="15" id="KW-0917">Virion maturation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB4007695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1334" mass="151733" checksum="C239995112470696" modified="2020-12-02" version="1">MAEVSLNSLKIVKLNGSNYRAWSFNMRLYLESLDLFEHAEGTAESPGSSATENVRRSFNSSAKKAWTHICLAIEPEYQIHVRDTRTAKEAWDALKGQFARESLLQKVRLRQQYYSCRFRPGDNMLEHISHLRSLHDQLKEMGVNIDDKELAMTLLASLPEKFKPLITALDAVGDENVSYEKVKNMLLNDIDRSSDAKGSDDAFAASRVWNKKGQHNGNWNKEKKRVFKGKCHNCQERGHYARDCPKRNADSANRKESKGSARCAEKDDGDFITEDEALFTSDLLHNSGWIIDSGATQHMTFDKSNLSDYVEFKQPCIVNLGDNRSILAYGKGTYRIVADLGDHVQNISLRDVLYLPDLEKNLLSVRAMVKLGANVRFEGEGCEITRNSKLLAVGKMQGKLYMLKIVTVDHANIAKEDLNLKLWHYRYGHLGMDNVNKLMKGEMVQGMDCVMDGESDSVCEGCIMGKQHRTKYPSGVAKRATEPFELVHSDVCGPMSVNSIGGSRYFVTFIDDYTRYTYVYFIKHKDEVLAKFKEFVNLATNLTGKSVKTLRTDNGGEYCSKEFESFLKEKGIVHQLTVPYNPAQNGVSERMNRTLVESTRSMMSHGKTPVEFWAEAINTAVYLRNRSPTTSLKEITPYECLFKQKPDVSNLRVFGCEAFAHIPEKQRKKFDEKSRKAVFIGYPEGTKGYKLYDPSTRKFIRSRDIVFVEGKFHDFKDGCSGKTCTDFYIPVDDVIPQVEIQDVPAVVIEGDHNELVDEENEREEVHVQPVGATYEENFMRETGNLGDKRQRRAPSRFDDKCYVADNLTADINEPVHIQEAWTGDHSVEWKEATDSEYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESLSENDTPIDVREYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMMGVKDIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWN0</accession>
    <name>A0A6S7HWN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005918">
        <property type="protein sequence ID" value="CAB4007800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWN0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="432" mass="49843" checksum="20C8D516646AD269" modified="2020-12-02" version="1" fragment="single">MATSAWQQVRKFASKTEQEIQKRIFTRIPNFCPSRAMLLQSWPVLLKSLQNVFGDEVSIIQKRLGSQQDGFDLRKRVSYFSNIVLINTSEVNHDAERNSDKQVITQLLEENRLLKNELVRSREKISKLTESLNPVGESLSDEQCKLLDKEMAVVREMYCIDLEHDFAETDDGERVFMPSFFENVTLSIKEKCPLLTSIITTLAVGKSTKRNTGNKDSNFKFKTALQAILALDDVKSERTKSSFSVLFGLLLFSYGAGKALLTMLEPFGLCKSYEFYRGFLGKSLQHYKNKVNLRCPDGCPVIFLFDNINIHRGRPRYERIQRKATPEMWNFTVRAVMKPDVSGIDNISTMNIDLTPQRPLKDLKAVDFLLSSYPDLQKLLQQRYDSFLIEAIDMVINVLNFDSDCIEHMSEKDFDDYINDESYKISKRNDFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HX51</accession>
    <name>A0A6S7HX51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080608</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005983">
        <property type="protein sequence ID" value="CAB4007990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HX51"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="91"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="142"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="167"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="269" mass="30491" checksum="67065E29E749861C" modified="2020-12-02" version="1" fragment="single">WEVQYDKKAKSTRLQPGDRVLIRNVKERGGPGKLRSYWEDKVYKIVRQKLNEIPVYEVIPESGGETTRVLHRNMLFPRTYLPVENPVVKPAQLKKKKKSEKEKQVTQDYQTDSKDEFGIATFAPELTRTDPEDEFVPVSVENEAQQSVEEAVQEGATPEEPAQESQAATGTTVGAEAETQVDSHPVSSQRVRRPPTRLGYGNLGQPTEHWTSINAVHAPATNNMYLHQYPVPPTPPIPFFPPILPMSFPVFPLYWSSWQGPIMPSNIWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I1F7</accession>
    <name>A0A6S7I1F7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021994</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003802">
        <property type="protein sequence ID" value="CAB4000302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I1F7"/>
    <dbReference type="OrthoDB" id="5958943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="30195" checksum="93D1D6CADCD54F66" modified="2020-12-02" version="1">MLIFAFLVFAALVLHSSSNVCNIPVVVYYGPSAINYRVTVNNMTTSGRLVSGGAEDMDYDRFSRRLFSYVSGNVYSIEQDGSDLRDIAAAGNVERFTVDGRNNIIYYINDLTDTVYKFNMTNSVETDLGIRAKGIDMDSVNNYLVIVNTGSGSNIERYNVETEMLDVIKSGGDFPQDVSVDADNGVVYWVDVIDDGSTFKVMRTSYAGETKDLNITYPDTIEIALDELYLYVLVVSNETIYKYKKSTWEQMGSIVVPSGTSGIEVAFGEYQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9X5</accession>
    <name>A0A6S7I9X5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Small ribosomal subunit protein eS17</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">40S ribosomal protein S17</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A045683</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007643">
        <property type="protein sequence ID" value="CAB4012820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9X5"/>
    <dbReference type="OrthoDB" id="1727351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.60.20:FF:000001">
        <property type="entry name" value="40S ribosomal protein S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.60.20">
        <property type="entry name" value="Ribosomal protein S17e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00511">
        <property type="entry name" value="Ribosomal_eS17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001210">
        <property type="entry name" value="Ribosomal_eS17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018273">
        <property type="entry name" value="Ribosomal_eS17_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036401">
        <property type="entry name" value="Ribosomal_eS17_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002242">
        <property type="entry name" value="PRK01151.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10732">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10732:SF0">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00833">
        <property type="entry name" value="Ribosomal_S17e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116820">
        <property type="entry name" value="Rps17e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00712">
        <property type="entry name" value="RIBOSOMAL_S17E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00035467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4012820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15893" checksum="F2881627ED425EA9" modified="2020-12-02" version="1">MGRVRTKTVKKAARVIIEKYYTRLTLDFHSNKRVCEEIAIIPSKRLRNQIAGFVTHLMKRIQGGPVRGISIKLQEEERERRDNYVPEVSAIEQDIIEVDPETKEMLKVLDFGNIANLQVTQPITATQSFRPGGGGGFGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJQ8</accession>
    <name>A0A6S7IJQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol poly from transposon 412</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A044397</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009572">
        <property type="protein sequence ID" value="CAB4017503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJQ8"/>
    <dbReference type="OrthoDB" id="5980870at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052925">
        <property type="entry name" value="Phage_Integrase-like_Recomb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605:SF3">
        <property type="entry name" value="P CELL-TYPE AGGLUTINATION PROTEIN MAP4-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4017503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="38856" checksum="12D86822C42B7ED7" modified="2020-12-02" version="1" fragment="single">NQISAASTACRPSTSTSTRGTFSSLDADLRRYQLASLAKGTIKTYSSGEKQFTNFYYQFHLHKYVPLLPTTENILIYFAVFLAKTVNPDTIKVYLAAVRHMHLVNGYDLQITKFQRLHYILRGIKRVKGVSTRTRLPITLDHLKLFHRILHSRTSPTHDETMIWAAISIAFFGVLRIGEMTCSGPYNSSTNLCRSDVSFHNKKRGDNEVFLQLRIKASKTDPFRASATITIGSNSGIYCPVRALQTYLSRAPTDYAGPLFCYSNGVPLSRSQFTKELRTLLAQGGHHPAHHAGHSFRIGAATTAASQGLPHWLIQTLGRWSSDCYLRYIRTPINVLTDVSKRLIAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMZ0</accession>
    <name>A0A6S7IMZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010991">
        <property type="protein sequence ID" value="CAB4020514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMZ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="423" mass="48320" checksum="C4B95DD8E8B49AB4" modified="2020-12-02" version="1">MSETNLQNPRSGRRQYLITYSQADISKFPTRESFGKMLENEFNAGSSQVKVSHWACCKEPHEENGFHYHCCLKQTGVKKWLSIKNAITKKHDIVVNFSDHNQYIYAYRYVCKTDKDVAHSDNHPDLSEVGSPRTKASTVALREAGRKRRSTNTNAEATASRERGNQKRRHLSNLEVGDFIVANNITTVQQLFAKADARKQEGESDLANFLFSRTQKTIAELMSKSWLLKQASSEIQRDEITRIEKVRNAAENACVDGCNARGRGKFRNLMISGQTNCAKTFMLKPLKCIFDDRLFDNPANDKYAWVGADKAEVILLQDFRFSKEVITWKDLLLLLEGETVKLPAPKNHFANDVVISSDVPIFATSKAPIVYKGPYNVEDERETEMMNSRWRMIRFKHAFEEKDQKKVEPCGSCFARLVLLGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IP15</accession>
    <name>A0A6S7IP15_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010159">
        <property type="protein sequence ID" value="CAB4018769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IP15"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31791" checksum="B78E6297A3FFFFAC" modified="2020-12-02" version="1">MARVIPLYKNGQRNIPGNYRPISVLPAISKIMERILYDQLYNYLTKFELLSDSQFGFRKSHSTATALLDCTNDWYMNLDRKMFNLVVLIDLKKAFDTVDHQILLRKLELYGIKREALTLLKSYLTNRNQKCQIKNSFSTERLIKCGVPQGSVLGPLFFLLYINDLPQCLNKTKPRLFADDTNLTASGDSIIDLETVVNSDLENLRKWLIANKLSLNVAKTEFMLIGSKAMIKKNSDSRLNVFIENKQITQVSECKTLGVIVDQHLSWKSNSENICKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRC6</accession>
    <name>A0A6S7IRC6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Amino acid transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A014619</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010533">
        <property type="protein sequence ID" value="CAB4019579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRC6"/>
    <dbReference type="OrthoDB" id="5877963at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015501">
        <property type="term" value="F:glutamate:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005313">
        <property type="term" value="F:L-glutamate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015175">
        <property type="term" value="F:neutral L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="entry name" value="Sodium:dicarboxylate symporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050746">
        <property type="entry name" value="DAACS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958:SF63">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958">
        <property type="entry name" value="SODIUM/DICARBOXYLATE SYMPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00173">
        <property type="entry name" value="EDTRNSPORT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="Proton glutamate symport protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0769">Symport</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="57"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="93"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4019579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="15971" checksum="733D8934E9776BA5" modified="2020-12-02" version="1" fragment="single">MSKSLFKVIRENLMFLQLLLGVILGIVLGLFLNDKVQHSTEFTPRELAMFIGFPGELFVRMLMLVVLPLIASSVITSLTIIDKITAKKIGKRAAIYFLVTSLIATSLAVVLASVIIKPRAHEIQEEDRMPKEGSSPVYAILDML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRI8</accession>
    <name>A0A6S7IRI8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Zinc finger 271-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A085541</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the krueppel C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011692">
        <property type="protein sequence ID" value="CAB4021895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRI8"/>
    <dbReference type="OrthoDB" id="427030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000557">
        <property type="entry name" value="zinc finger and SCAN domain-containing protein 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:001049">
        <property type="entry name" value="zinc finger protein 319"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:002343">
        <property type="entry name" value="Zinc finger protein 33A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:001498">
        <property type="entry name" value="Zinc finger protein 404"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24390:SF237">
        <property type="entry name" value="FI23536P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24390">
        <property type="entry name" value="ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4021895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="31427" checksum="9959363A7E37910A" modified="2020-12-02" version="1">MNLMFATNDFYDHVHMLAVHKRTHTGEKPYECDVCNKRFSQSSHLTNHKRTHTGDKPYECDVCNERFSHPSHFAVHKRIHTGEKPYECDICKKRFSQSSTLGRHKSTHTRDKPYKCDICNKRFSESHKLTQHKISAHKRSQSFECDNSCKKTVTQRKSLKRHWRSHLRDGLLLCHTCGKEIIQGQGHANNILSDDQFDCDKCNKLFPDIERLSQHKAKDHGTSYQCDLCKELEAREPTGIGYICCVCDAEFEIATELEDHMSMHDNVLPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISC0</accession>
    <name>A0A6S7ISC0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005045">
        <property type="protein sequence ID" value="CAB4004918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISC0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12676" checksum="CE25A991F34A1EEB" modified="2020-12-02" version="1">MILEEPFGSCVAIVSRLIIQTPPISRENLQREYTLIFVPNPEQDEVYDGLIHREYKQEAPTEVPYYEDGTFASMQAATRRNSFESFIRSLKANVGLIISVVVILGWLTVGVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEA0</accession>
    <name>A0A6S7JEA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026908</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008661">
        <property type="protein sequence ID" value="CAB4015292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEA0"/>
    <dbReference type="OrthoDB" id="5975509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="852" mass="98422" checksum="F1A32586C6304525" modified="2020-12-02" version="1">MSIYGLYHPPRHNYLESDLLDYLINISDDVLDKYPDTVIVCGGDLNSLDIKHLEELSGWDAMVDFSTRGNACLDNCLTNRIDLFSKCYPFHMLTKTDHMGVILPAGTKLKPMRRKVEFRDCRKHRKEDFHKALAEEDWEDVSQSTNVNDAVNCLERKIMDHMNKCMPTKTVSISSRDPYWMSPLIKSLLKSKSRIARSQKDRLSLINKRISDVICQNRRNFRALVGSRTWWRKTNDISQRNASSSRVTLDNASLTRLNRYFGELCHDDSYVEPTLSIIGDEVDIPSFTEQQVDLPKEDGDFRGINITPVIARTFEKLVYNSQNKVLSFLDRANCKAVRLFSMDFSKAFDSVKHSLLSEKFKKKTVPLNPYIINWYLNFLKNRKQRVVCNDFCGEWMDVNKGTTQGSVSGPYLFNIFLNDLEVDIDGENALFKYADDSNIIVPVWSEGPDTSTDTVGQFLSWSDDNFMTCNPGKCKELIIRKKGYNDQLDNVYNIPQCKELPILGTTFQDNLKFTSHVRGKLIKANKCLYVIRTLRAEGYSQCEIDYLFKTLVISTITFGLSVYGSSPAELNTLQRVFDRCFKRKYISEPVNIRYLLEIQDRNIFKASVNQKSAIVDLIPRKKSTSYSLRTEFSQYPRSNPLKISLQFGNVVVFQKEKKEKRENILKETQKIHDVNVKINEKERELHAKREKLRSLDVKNALEDFEKSDSNYIRSVAVYYSGGIMAKYRAAYRDVSYQKYIDNQKSARIVVNNCSIPRLVPYNKLMPFIKSINIGKLYSVRETLCEGLSEEEKISGVLSNIRVMLPCLARYYMVNEGNYELLWFNDQPFTFYISIGGDIALLLARKTLPVLGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEN8</accession>
    <name>A0A6S7JEN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038113</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016038">
        <property type="protein sequence ID" value="CAB4029248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEN8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8754" checksum="AA3FD67131E853D1" modified="2020-12-02" version="1">MDALSEDLSKNKSTCDSGDDDSDEFVFEGNFLPYQGEPLASSGSEDIDTSEDDEEDEDGILREVLEQRYEKVVPVQSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JES6</accession>
    <name>A0A6S7JES6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Apple domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045893</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017153">
        <property type="protein sequence ID" value="CAB4030805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JES6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Apple" evidence="1">
        <location>
            <begin position="6"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="82" mass="9090" checksum="93ED12E7030CCE3C" modified="2020-12-02" version="1" fragment="single">MKHAIFKRKTGQYLPDSVITTKYAESELECSMHCTSVDACLSVNYKASGVDQGLCQLNNSTTSENFGLVSDDKFVHLSIVKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIB4</accession>
    <name>A0A6S7JIB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018174">
        <property type="protein sequence ID" value="CAB4032156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIB4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="14374" checksum="D4B7DC05918FF997" modified="2020-12-02" version="1" fragment="single">CARAKENGSGPCRVHAVGQVSLPPEGNTFVVLPGENVTIVWKLDVDVALITGRSWTFLPKGIDTFAAIIGDGGVVGNPQYSPGPFTIIKPATLILKNVTTQYNGTYNFFVSTLRGGENSIVTVFVAGKCMLYNIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIT9</accession>
    <name>A0A6S7JIT9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004467</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017164">
        <property type="protein sequence ID" value="CAB4030828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIT9"/>
    <dbReference type="OrthoDB" id="5984802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF17">
        <property type="entry name" value="HAT C-TERMINAL DIMERISATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="187"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="24218" checksum="43A356B403594E7F" modified="2020-12-02" version="1">MTKNKTARDFFGTLQNLYVFIETCTKRHALYTKNQTLRNKKDKDGKQREYFFKKLSDTRWACRADSIKAIHHTLEAVLDTLENIKDNETKANIAAEAKGLFNNIDFQFVLALEVFFFTKVLKKVMHLSKGVSDKLQSEDLDVVTGCERVADLLTTLRGLRCEKEFDAFWANSLTRCHDLNIPEPKEIRPHKLPRRIDDNPDTAGQLLPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRL9</accession>
    <name>A0A6S7JRL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001749</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020907">
        <property type="protein sequence ID" value="CAB4035295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRL9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18343" checksum="01F19A911DAAA9C2" modified="2020-12-02" version="1" fragment="single">AESCIESFVTVEEASITSEALSLDNTLSNSYPNVISISDDQQAGLSSPNGNSTTVEEIVAGINQNYNPSTMLPLFDDQLKEYRTKNSHTDRMIVVHNNSGITHQKPTRKSTRTRKNTRSSHIKSKRCNYIPQPISHIDTSAYNPKIFGRIALQIGSRTGKTTRFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZY7</accession>
    <name>A0A6S7JZY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023117">
        <property type="protein sequence ID" value="CAB4037467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZY7"/>
    <dbReference type="OrthoDB" id="5984050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023246">
        <property type="entry name" value="AUTS2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14429:SF22">
        <property type="entry name" value="AGAP013055-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14429">
        <property type="entry name" value="FIBROSIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="156"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="28010" checksum="583184C13024802A" modified="2020-12-02" version="1" fragment="single">DSSESGNSGKGYICDGESEDEQVTEVPQEKRPKSLTSVLEVETKKEVVPIKVDLSKDDDEEPVKNEKAFQIDFDAQKSILSPRSSSFHTPSLSFSSSSSLAISQSSRPIPQSSWLPRLTSSFKKPLSSIEPCCGSGAYAGTDVLHQELNHRFLQSHSELERNSQHSKPSGHEMHQHLHHHQHQHQHTHYYPSPLLASPYFPNPTPVPGVLSPFSAPVPTYGSHMIPPYNKKTGKWCAAHVQIAWKIYCHQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2G2</accession>
    <name>A0A6S7K2G2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086997</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024290">
        <property type="protein sequence ID" value="CAB4038507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2G2"/>
    <dbReference type="OrthoDB" id="410381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="16905" checksum="2F9ECC57D0B48BE3" modified="2020-12-02" version="1">MVILKKFKDARNTCNNKIRQAKTGYYHQYFKTNSGNPKEIWKSINELMSRNAKSDEISHLTCNDRVISDSADLTECFNNHFAEIGLKLKPDEPDELNNCLGDYLKQADTVFTLDLTTPSTVFKLLSSLQEGKAMGLDEIPAKLLKCARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2N6</accession>
    <name>A0A6S7K2N6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A050165</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008818">
        <property type="protein sequence ID" value="CAB4015718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2N6"/>
    <dbReference type="OrthoDB" id="5972212at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="16074" checksum="BA23DF2E1CDB8768" modified="2020-12-02" version="1">MHDARILGESGLMQDLRQDAFAPDGTPLCLYGDPAYPLRVHLQQPFRNNAELTEDMRQYNKAMSSVRVSVEWLFGEITNYFKFVDFKQQLKIRLSLIGKIYIVSAILQNSLACLYGNIVSEYFEINPPTLENYFWRADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8I6</accession>
    <name>A0A6S7K8I6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016538</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009340">
        <property type="protein sequence ID" value="CAB4016968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8I6"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="397" mass="44463" checksum="68A1920314774E5A" modified="2020-12-02" version="1" fragment="single">DLVYGENLDVITITETWLNDKIFDNEILPNGYNIIRKDRPGKKRGGGDIVITPEDVYECLCTLDQNKASGPDRIPATLLRHCASSISSSLSELFNKTLSIGKLPKEWKLSNITPIPKSGSSSNVTNYRPISLLSLVSKVLERCIYNRLIEHIGEKLHHLQFGFLKGKSTTSQLLQVLHDIGNNPDNKCQVDTLYLDFAKAFDKVNYELLLFKLKRFGISGNLLSWLRDYLSGRYQRVTVLGETSNPLPVLSGVPQGSILGPLLFLVYVNDLPDCVSSSSSLAMFADDSKCYQPIKCYEDAEVLQSDINAIDSWCKEWQMSLNHSKCGLLRITRNSQPIHYSYNVGGNLLKTINKQKDLGVIVSKDLKWSLNVQAVSNKANKMLGFVKRSCFHASDPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KB29</accession>
    <name>A0A6S7KB29_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Malate dehydrogenase</fullName>
            <ecNumber evidence="7">1.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A051101</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(S)-malate + NAD(+) = oxaloacetate + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.37"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LDH/MDH superfamily. MDH type 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.37" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020031132">
        <property type="protein sequence ID" value="CAB4042926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KB29"/>
    <dbReference type="OrthoDB" id="755699at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030060">
        <property type="term" value="F:L-malate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006108">
        <property type="term" value="P:malate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01337">
        <property type="entry name" value="MDH_glyoxysomal_mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000013">
        <property type="entry name" value="Malate dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.110.10:FF:000009">
        <property type="entry name" value="Malate dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.110.10">
        <property type="entry name" value="Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022383">
        <property type="entry name" value="Lactate/malate_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001236">
        <property type="entry name" value="Lactate/malate_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015955">
        <property type="entry name" value="Lactate_DH/Glyco_Ohase_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001252">
        <property type="entry name" value="Malate_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010097">
        <property type="entry name" value="Malate_DH_type1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01772">
        <property type="entry name" value="MDH_euk_gproteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11540">
        <property type="entry name" value="MALATE AND LACTATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11540:SF16">
        <property type="entry name" value="MALATE DEHYDROGENASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02866">
        <property type="entry name" value="Ldh_1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00056">
        <property type="entry name" value="Ldh_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56327">
        <property type="entry name" value="LDH C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00068">
        <property type="entry name" value="MDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0520">NAD</keyword>
    <keyword evidence="4 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Lactate/malate dehydrogenase N-terminal" evidence="8">
        <location>
            <begin position="3"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Lactate/malate dehydrogenase C-terminal" evidence="9">
        <location>
            <begin position="125"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4042926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="22775" checksum="28A848455CD02D25" modified="2020-12-02" version="1" fragment="single">MSPLIDQLALYDIVNTPGVAADLSHIESAAKITHHQGAEQMEEALKDCDIVSIPAGLPRKPGMTRDDLFNTNASIVKNLTEACAKYCPNAIISIISNPVNSTVPIASEVFKAAGVNDPNRIFGVTTLDIVRANTFVAQLKDLDVSKVKVPVVGGHSGITILPLLSQTQPKTSFTQAEIDSLTDRIQNAGTEVVNAKAGAGSATLSMAYAGARFVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEK6</accession>
    <name>A0A6S7KEK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031888">
        <property type="protein sequence ID" value="CAB4043257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEK6"/>
    <dbReference type="OrthoDB" id="407509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12472" checksum="30CBF5A0FDFF2B38" modified="2020-12-02" version="1" fragment="single">MEKFPDEWALARVSPIFKAGLKTELGNYRPISVLTAVSKVFEKILYKQISKYSDDNELFTKYQSGFRKGYSTSTALLSVTNEWLCNIDKGLINGVLFLDGDIDQNKYYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFH9</accession>
    <name>A0A6S7KFH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc finger BED domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A019949</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014515">
        <property type="protein sequence ID" value="CAB4026963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFH9"/>
    <dbReference type="OrthoDB" id="10057873at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052035">
        <property type="entry name" value="ZnF_BED_domain_contain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481:SF10">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4026963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="441" mass="49568" checksum="C9B8E113D490FE20" modified="2020-12-02" version="1">MMPKLYKNAQGALLQSLSTAITAGIYFSITCDIWSSLALDSYLGVTVHFISEDFYRKLVVIRCVPYNASHTGESIKTRIRYVLHKWGLPEARLHCVVSDSAANMKKAFEDFNWIACFLHLLALVVKRSIFQQSRVKLIVKKVKNLIIKLRTPTGKRILNENQSTDTALITPCDTRWNSYYLMLQCVTSKKAAITLSQQDPELKLEARQQPIFLTTKAAESDTVSIAEVIPLLKKLNFDIGAITYSGIGTLNAEVLQQMKSDLAEVAEPRHEVESGEGEPSTSKDSWAAVLVDNDSGQDSQDEEMEAPYRVELQRYLKEKRIADLTKDPLTYWRVKHNKFPHLGTLACRYLCPPPGSAASERLFSTGKNVLGMKRLSLKPDNMEANLFLKYNIRALGYKTDLPRVTDDFVAPNEGNLPEAVVGEVHDDETSDVEIIMSDDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KG74</accession>
    <name>A0A6S7KG74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A043804</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029006">
        <property type="protein sequence ID" value="CAB4041834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KG74"/>
    <dbReference type="OrthoDB" id="10625912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4041834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="16614" checksum="3788F6DCDCA77F96" modified="2020-12-02" version="1">MPDPGLSNPTSSSNSNTGVIIGAVVAAVVVLITVILIVACLLYRRKPQNENTQDTGNIQNAAYEGDTQTDRSLPEIPQAHRDYEEPAQYAQLDSSMRVPIDANYQSLQTRDHVQLGRDHNENVQRYASMNIDNNLRNEFPDESVYEEVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGP8</accession>
    <name>A0A6S7KGP8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060432</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010573">
        <property type="protein sequence ID" value="CAB4019668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGP8"/>
    <dbReference type="OrthoDB" id="6150403at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="210"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="29186" checksum="48390E32611FAB5B" modified="2020-12-02" version="1" fragment="single">EIREKSEVQQWRYCPSKENPSDDASRGLKPSEMTSECRWLVGPSFLKGPESSWPQTNLRKDIEKEDPEILIQSNVVVEVKRPAIYELLERYSSWNVLKAKIVWLTRFAFLLSHRLHRSHICPLGKPTIPELENAENDIMRMIQQQVFSEEYNALSKSGKVKISSSIAKLNPFIGENNIIRVGSRLEYAHISYNAKFPPILPKQHWVSELLARHVHCSNAHIGQEHTLNILRQRVWICNARSLVRKIINKCSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KL97</accession>
    <name>A0A6S7KL97_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000324</name>
        <name evidence="3" type="ORF">PACLA_8A000669</name>
        <name evidence="2" type="ORF">PACLA_8A044285</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008640">
        <property type="protein sequence ID" value="CAB4015246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020015170">
        <property type="protein sequence ID" value="CAB4027992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020020407">
        <property type="protein sequence ID" value="CAB4034773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KL97"/>
    <dbReference type="OrthoDB" id="5982143at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="189" mass="22218" checksum="94B075ABF64DEC00" modified="2020-12-02" version="1">MALSGIELPVMQWDGENLKENWRRFKQHVELMFSGLLRSKNEAEKCSYLLIWVGQKGRDIYNTWSDISETNRGKLKTYYDRFEKHVNPKANPVFARYKFHNKIQGPTEPVEEFTTELQLLAQDCEFHDQNEMVRDRIVFGTNSNKVREKLIMEGAELTLEKAIQIARTYEKPKPNSKACLLKTRKKAFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KUG0</accession>
    <name>A0A6S7KUG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Serine protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A059226</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041656">
        <property type="protein sequence ID" value="CAB4045750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KUG0"/>
    <dbReference type="OrthoDB" id="1735038at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070008">
        <property type="term" value="F:serine-type exopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008758">
        <property type="entry name" value="Peptidase_S28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11010">
        <property type="entry name" value="PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11010:SF117">
        <property type="entry name" value="SERINE PROTEASE 16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05577">
        <property type="entry name" value="Peptidase_S28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4045750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15767" checksum="7FB5390B02900955" modified="2020-12-02" version="1" fragment="single">MGMNMIKHLVNIVLLGFLVHEGFATIPRFFRGRPRGREGMLGSPNVKHMVKLPGEQWFTQRLTHFNDANKATWQQRYWYNSTYWKLGGPVFIMIGGEGEANPTWMVEGTWIKYAQEFGAFTFMLEHRFYGHSHPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KUQ4</accession>
    <name>A0A6S7KUQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036931</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017768">
        <property type="protein sequence ID" value="CAB4031603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KUQ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="70" mass="7535" checksum="363F16BBC8D269D5" modified="2020-12-02" version="1" fragment="single">MVCCISPWQPAGRAGSANLQPHSLAGKSKTIGATAETESVLLLSENIANRSESPLEFKATVFKVFWESQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L8P6</accession>
    <name>A0A6S7L8P6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NLRC5 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014330</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015791">
        <property type="protein sequence ID" value="CAB4028879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L8P6"/>
    <dbReference type="OrthoDB" id="1394818at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048471">
        <property type="term" value="C:perinuclear region of cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006913">
        <property type="term" value="P:nucleocytoplasmic transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027038">
        <property type="entry name" value="RanGap"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24113:SF15">
        <property type="entry name" value="NACHT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24113">
        <property type="entry name" value="RAN GTPASE-ACTIVATING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13516">
        <property type="entry name" value="LRR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="34097" checksum="FFF39BB1E9448D1F" modified="2020-12-02" version="1">MIPLQHQLRKLYLCEIKLRPCDADSAIKLLKNLKKLDLGGMKVNNGKAFIKSLSSLSFLEEIVFPDVLMHDHSVAGFFDALTSLRYLKYLDFGRSTITQVGAVTLAEVLPSLQLLEKLVLGNIGFDHECQKYLFHAVGKLEYLKEHDFGWSKFTQTGAVTLAEVLPSLQLLEKLLLNNIGFDDECQKHLFHAVGKLKYLKELDLGSSTITQTAALLEKLVLKGIEFDDECQKHLFHAAGKLKYLKELDLGWSTITQTGAVSLAEVLPSLELLEKLVLKKIGFDDECQKHLFHAVGKLKYLKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5U4</accession>
    <name>A0A7D9D5U4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Eukaryotic peptide chain release factor subunit 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A067193</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the eukaryotic release factor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000031">
        <property type="protein sequence ID" value="CAB3977128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5U4"/>
    <dbReference type="OrthoDB" id="10254527at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003747">
        <property type="term" value="F:translation release factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1330.30:FF:000009">
        <property type="entry name" value="Eukaryotic peptide chain release factor subunit 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.60:FF:000001">
        <property type="entry name" value="Eukaryotic peptide chain release factor subunit 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.960.10:FF:000001">
        <property type="entry name" value="Eukaryotic peptide chain release factor subunit 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.960.10">
        <property type="entry name" value="eRF1 domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.60">
        <property type="entry name" value="eRF1 domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042226">
        <property type="entry name" value="eFR1_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024049">
        <property type="entry name" value="eRF1_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005141">
        <property type="entry name" value="eRF1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005142">
        <property type="entry name" value="eRF1_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005140">
        <property type="entry name" value="eRF1_Pelota-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004403">
        <property type="entry name" value="Peptide_chain-rel_eRF1/aRF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="Ribosomal_eL30-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03676">
        <property type="entry name" value="aRF1_eRF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10113">
        <property type="entry name" value="PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03463">
        <property type="entry name" value="eRF1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03464">
        <property type="entry name" value="eRF1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03465">
        <property type="entry name" value="eRF1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01194">
        <property type="entry name" value="eRF1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="L30e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55481">
        <property type="entry name" value="N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53137">
        <property type="entry name" value="Translational machinery components"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="eRF1/Pelota-like N-terminal" evidence="6">
        <location>
            <begin position="4"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3977128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="435" mass="49034" checksum="0E974F2A06D5E116" modified="2020-12-02" version="1">MEGAEAADRNVEMWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRIAKMLADEFGTASNIKSRVNRLSVLSAITSVQQRLKLYNKVPPNGLVIYCGTIVTEDGKEKKVNIDFEPFRPINTSLYLCDNKFHTEALSNLLTDDTKFGFIVMDGNGALFGTLCGNTRDVLHRFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLYIANDKPNVTGLILAGSADFKTELSQSDMFDQRLQSRVLKLVDVSYGGENGFNQAIELASEVLANVKFIQEKKLIGKYFDEISQDTGKFCFGVDDTLKALEMGAVNILIVWENLEIQRFVLKNHALDEEKVLHLRPDQERDQTNFVDQNTGVELELVEKMSLLEWLANNYKNFGATLEIITDRSQEGAQFCKGFGGIGGILRYRVDFQSMEFDDDDWMDDSDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5V7</accession>
    <name>A0A7D9D5V7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015587</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000030">
        <property type="protein sequence ID" value="CAB3977114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5V7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14148" checksum="9161E4255BC5181B" modified="2020-12-02" version="1" fragment="single">AYRRWEEVTEIDRVVAKGLVVTRSCELFGFGKALMTFMGDVESTLTKGMWEDKTVKAKKEIMIIRNTQFVADIVESVEVLGVDKGTGCLKSGVPAGVVTEGFDDGLQSGVGTGELLHFRNGHGFWGGMIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAM2</accession>
    <name>A0A7D9DAM2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Putative hydroxypyruvate isomerase</fullName>
            <ecNumber evidence="4 7">5.3.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A075073</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3-hydroxypyruvate = 2-hydroxy-3-oxopropanoate</text>
            <dbReference type="Rhea" id="RHEA:11952"/>
            <dbReference type="ChEBI" id="CHEBI:17180"/>
            <dbReference type="ChEBI" id="CHEBI:57978"/>
            <dbReference type="EC" id="5.3.1.22"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the hyi family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.22" evidence="4 7"/>
    <dbReference type="EMBL" id="CACRXK020000307">
        <property type="protein sequence ID" value="CAB3980622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAM2"/>
    <dbReference type="OrthoDB" id="4214675at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008903">
        <property type="term" value="F:hydroxypyruvate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046487">
        <property type="term" value="P:glyoxylate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.150:FF:000007">
        <property type="entry name" value="Hydroxypyruvate isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.150">
        <property type="entry name" value="Divalent-metal-dependent TIM barrel enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026040">
        <property type="entry name" value="HyI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050417">
        <property type="entry name" value="Sugar_Epim/Isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43489:SF6">
        <property type="entry name" value="HYDROXYPYRUVATE ISOMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43489">
        <property type="entry name" value="ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006241">
        <property type="entry name" value="HyI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="Xylose isomerase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR006241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3980622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="28816" checksum="7A92215BF2F22E69" modified="2020-12-02" version="1">MFKEWLNFIDRYKAASEAGFKAVESGEEIFQYSVEEIIKAKSEANVEQVVIVGYGGPRDGLAAMPSKETEFRQSFTKSLNYALALKCRKIHVCSGVMTSVDGQEVPYSSYEETYIKNLRYCSEEVRKVGLKILIEPISTIPGYFLTNTTQAIEILKKLNCDNVEMEFDFFHAQRTHGNLTKTLKENLKYIGHIQVSQVPDRGEPSSSGEINYQYIFQLLQDLGYNQWIGCEYNPQGKTEDGLKWIEDYGLEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH06</accession>
    <name>A0A7D9DH06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000723">
        <property type="protein sequence ID" value="CAB3984329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH06"/>
    <dbReference type="OrthoDB" id="10640126at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="289" mass="32574" checksum="B3F90E33D917FEF1" modified="2020-12-02" version="1">MSGSTKYHKDTIMISLLQNLFHSLSEIVRLMKLLDVSINHFMIEVFLRQPHSRIHSLLVLATFASHCGSNENLQTVIVTNSLAIQTLCEEGNIHAAELLQNECEEIISRLGEECRAINRYVFSVAKSQLFLCKGLYNEGWQLVKAVLDEAKGNVGTTTKFVLVKAKLLCVRYLSLPTSVFKASLEDADGSNYFDYLSDSMKYAEALVKHFVENGAEVEGLNNQKKERAVFLSHWSLLSELSCCFVKLGKVYLLQGAFCTVSCFHEKVQLTTQQSHHAFVSQYYVILIFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DHQ5</accession>
    <name>A0A7D9DHQ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Kelch 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A067454</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000966">
        <property type="protein sequence ID" value="CAB3986117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DHQ5"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.420:FF:000001">
        <property type="entry name" value="Kelch-like family member 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017096">
        <property type="entry name" value="BTB-kelch_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412">
        <property type="entry name" value="KELCH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412:SF497">
        <property type="entry name" value="KELCH-LIKE PROTEIN 18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037037">
        <property type="entry name" value="Kelch-like_protein_gigaxonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3986117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="600" mass="67875" checksum="4D417C497F6F5BAF" modified="2020-12-02" version="1">MVHVLRRMSSSYEKSTTSLRFKPECHTNTVLESITEMRAFSILIDVHLEVEGRQFPAHKNILAASSDYFKAMFSCPIGDIEATVKLEGLTAKAIDLILDFMYRGEIEITEDNLEEILVASRMLLLESVTQACCKFTQDRINVNNCWGIRNIADKYSLNNLFGKVHAFIEDNFAEAKGSDEFLELPFQLMKELMADDELNIREDELVSAVLKWVEHDLEGRYQYLETLFKHLRLNYISEEYMRNLIQHNYIVSNHTFLVTLIKAVHSQSGTETLNELVTDEELAKMKTPRKWQRIVPVLTAVGGTQTLFYNTEEKIWVSLAPITTRHCPGLASIESEMFLVGGSRKWVRLADCERFSPEKNTWEDMAPMSVARSNIGLVVLEKYLYSVGGYDGDTPSRTVERYDPVANHWSSMSSMNNLRDGACVVADDSNIFAITGFDGNSYLSTMDVYDPSKDVWTSEGYTHIGNRRQDAMSACVDGKIYIIGGYYNDDCMSSGEAYDIEDNEWMAIAPMSGERNKAGCAALNRKIYICGGWEGSGNVLTSVEVYDTETDCWTALPPLPTPSAMRATFLYFPRKQVDKLTVKTKGKKQKQIHAVITSAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DMJ5</accession>
    <name>A0A7D9DMJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protocadherin Fat 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001454">
        <property type="protein sequence ID" value="CAB3989270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DMJ5"/>
    <dbReference type="OrthoDB" id="6252479at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007267">
        <property type="term" value="P:cell-cell signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000320">
        <property type="entry name" value="Hedgehog_signalling_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Zn_M74/Hedgehog-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01085">
        <property type="entry name" value="HH_signal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="Hedgehog/DD-peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="15310" checksum="46BA924FBC463FE0" modified="2020-12-02" version="1">MRYQDWWILAIWCILLLIAEISSSGPKELLLGDKFPNKSETEICGTIREVIQRNSGRFRRNLIRNTNDQVDYINEDARWMTSRTKGKLDVLASLVISKWKNGTVRVIQAWTDQVVASDPTSLHYEGRPLYIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DN92</accession>
    <name>A0A7D9DN92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005997</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001545">
        <property type="protein sequence ID" value="CAB3989753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DN92"/>
    <dbReference type="OrthoDB" id="330047at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027197">
        <property type="entry name" value="SLC43A3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20765:SF1">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOBASE TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20765">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="330" mass="36683" checksum="7C1521F0D942E37E" modified="2020-12-02" version="1">MSTQVCGVLPRRRYTAISVINGAIDSSAVMLLIFKLCYNSGISFKTIIIVYYSFIFGHGLLFTFSIFPKDLTDSTNTDIGNGGSNEEHSISSKADSNDLDIHTVGQLENENVFTISGEGKISLLSIIKGPKFMIHTCFVSITTLRSFFFIGIINKSLKRLTNDEEKVDFYLTILGLIQFTGIVLAFVPGFLLDWSPAGRHRNFSIIISFVLTGLISILVTVGLLIPVLELQIFNFFLYTILSSFLFSTHGSFIMKEFPLYHAGALFGLSLLVSAVVSLFQIPMFALMDGPYNGDPIWINVGLLVVQILVMVHPVYLWHCSKDEKKCSNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DPU1</accession>
    <name>A0A7D9DPU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014271</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001809">
        <property type="protein sequence ID" value="CAB3991228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DPU1"/>
    <dbReference type="OrthoDB" id="16729at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005869">
        <property type="term" value="C:dynactin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061640">
        <property type="term" value="P:cytoskeleton-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009991">
        <property type="entry name" value="DCTN3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28360">
        <property type="entry name" value="DYNACTIN SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28360:SF1">
        <property type="entry name" value="DYNACTIN SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07426">
        <property type="entry name" value="Dynactin_p22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21280" checksum="950439E8FB523D4E" modified="2020-12-02" version="1">MAVNAGIAMLEERIKVLERRIISTNPDKIKTSCTDALTQVKQDLNKIATRYSKLGVLWKRLNELQDYLTPEFLEKLTLTDQSKADIILAGEQQLTATAEQFQTLEQFKNIPSEATFKDLPEWSCKLQPLVQVNIQQLEEIETLDEQVCELLTTYNNIINSLSRQFQEWENIICELEEAAQNTTTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DUS3</accession>
    <name>A0A7D9DUS3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A033009</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002330">
        <property type="protein sequence ID" value="CAB3993799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DUS3"/>
    <dbReference type="OrthoDB" id="10359521at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="235"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="166"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="7"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="51"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3993799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="30551" checksum="5841C694C91EFE7E" modified="2020-12-02" version="1">MNQSEGEDSKIGVKSPERKETERKNPVEKPRECKANDEAPATKTAKRRARPSVEEMREAKEKMSGLEQQLAIQKTMMEEHQGKMAMLEQLIKRQCLVLKENDDQCNYEQLAKSAPDTQTFWERIENQLSSMIEKKGYDSGEETSLTKIKHQFDAQRLQLQEHGQCIKKHEEQFEDQLARIEIMREILDENSNQVGSENSVRLILEDHEKRLSALEDRMAVYEKQVERRLAEQHQLLIFTWLGLITTFVLCFAIVCSCCWYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DVW9</accession>
    <name>A0A7D9DVW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyenoic fatty acid isomerase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064977</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002374">
        <property type="protein sequence ID" value="CAB3994016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DVW9"/>
    <dbReference type="OrthoDB" id="5046242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.405.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050464">
        <property type="entry name" value="Zeta_carotene_desat/Oxidored"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42923">
        <property type="entry name" value="PROTOPORPHYRINOGEN OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42923:SF3">
        <property type="entry name" value="PROTOPORPHYRINOGEN OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13450">
        <property type="entry name" value="NAD_binding_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00419">
        <property type="entry name" value="ADXRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="503" mass="58064" checksum="D18CA1B634D4C9D8" modified="2020-12-02" version="1">MEIVRIVQSNPPPKGIPFPTVIPSPRSVKDKIAIVGAGPAGIHMAYLLKKKGFQNVVVYEKTDRIGGKTLTVEHRNTIHEMGTCYAQPDYDENLIAMAKKYGLWDPVELPSANIWPDKFPAPINYSSYVIPEIMKILKTSNTTVAQITLFKAMVQYCALHRNMFGKYEGELMREPDQQTMATLRCTFEDFLMKNNLLVLKPLFIPSHTIQGYGHLDEISALYGLMWNTPVYVKAIAAMSIGVPRGFCMIRCGFQKLWKTVVEKENINVILNADILKVKRYTNYVYLDLQYRHARRWHRKRIFFSFLIWTPSVYTTLRRLDACRKEWNIFSKLKPVWFTTTLFSSTYGTRGYSPIDYWPDNVKNKREHSLWGQRDSFGTLNNYHGEDYKSGSLPGGPDGKFIRTGVAYQYGKRKPRSKYWLGKILTKNLQSTNASNIKIIRQESWEYFPKFSPDDMADGALWNIFKMQGSRSTWFTGSSVNFESVKSVFEYNKLLVSKMKYISA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E654</accession>
    <name>A0A7D9E654_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A025364</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004103">
        <property type="protein sequence ID" value="CAB4001500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E654"/>
    <dbReference type="OrthoDB" id="8057740at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000003">
        <property type="entry name" value="Transposon Tf2-6 polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="7">
        <location>
            <begin position="7"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="8">
        <location>
            <begin position="154"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4001500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="31717" checksum="4692B759FB14D1E5" modified="2020-12-02" version="1">MDKGLLSERAKEISAFATPYGLYQYKVMPFGMKNAPATFQRLINRLITDIDGCKAYIDDVIIYSNTWETHLEIMRKFFQRLREASLMINLVKSEFGCGHVTYLGHIVGQGKVKPISAKIEAISAFPQPSTKKQVMHFLGMAALLQSGPVLSAPDFSRPFKLAVDASDIAAGAVLLQEDDNGIDNPVAYFSCKFNHHQRNYSTVEKECLALILVLQHFDVYVSSAGVPIEVFSDHNPLVFIHRMKDKNQRLLRWSLILSEYNMHIQHIKGQDNLIADCLSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E6J4</accession>
    <name>A0A7D9E6J4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A000534</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004318">
        <property type="protein sequence ID" value="CAB4002304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E6J4"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="77"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="3">
        <location>
            <begin position="283"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="381"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="392"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4002304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="442" mass="50347" checksum="46AA8E695AC3F20A" modified="2020-12-02" version="1" fragment="single">VLNANRVCGFVDLCNKNIVNKMTILQRIRLMNHLIGKTELQRFLGMINYLGKFLPNLSKETAPLRQLLEKDVQWRFEQPHETAINTLKKMITSSPAYYEPKLPTRVTTDASKAGLGAVLEQNYDGEWKPIAFASRAMTQYHKPLKAIFSKPLNKAPPRIQRFMLRLQKYDLGVEFTPGSEIPVADTLSRAYLNHQVKPEVPEQEIRCHVHSIIKSLTVSMSKLDELKRETAKDENLQKLKLFIREGCPNDKKTVPDAVKPYLTHLDEISEAEGIMLRGSRIIVPTSMRREMKSRIHEGHLGIERCKARAREALYWPEGSTNSMAQVMKKADKPRSYILQDETGRLLRRNRRDLLRTDESFIGKGPQDLRDNKVEVMEPATSDTQSTAIAQEPTTCSSIPQPTTCSSIPSTCSSLPVADQKSPYKTRSGRNVRPPAWLQDYEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E845</accession>
    <name>A0A7D9E845_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072419</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003987">
        <property type="protein sequence ID" value="CAB4001030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E845"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11902" checksum="CD30405127131BB5" modified="2020-12-02" version="1">MEDKPEQIQVPVTSEKKKDPKRVAAGKRLAAISRIAKERKKKLAEPSESPSNDSMITYIGVVIALISLVLAYKTHQRETKELEPKFIPKTVEVTKKADESKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDW9</accession>
    <name>A0A7D9EDW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056648</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005772">
        <property type="protein sequence ID" value="CAB4007349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EDW9"/>
    <dbReference type="OrthoDB" id="2160826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206:SF1">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206">
        <property type="entry name" value="PROTEIN CBG10425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="41648" checksum="C23BA60276C83664" modified="2020-12-02" version="1" fragment="single">MDITNVTFYVTKLRDHPIGRSVRLPKYVLESRAIVSLDCNEQTGLPYEDKLCFFRCLALHRGCHPHNLERDTQHFYEQYSEDDDFDGVTLEELPELEKLFELNIYVYRLTELHGEDEDKTSIVAQLIQRSHSRYTNSMYLNLYGSHFSYIKNLTMYSKSYCCCKCDKMWKTAKALNQHERTCEATIRHIFPGGAYRVPQTIFDLLADEGIEIPDDLNYFPYRATFDFECYFKREAEHPRNTAKLTWEAEHIPLSVSVCSNVPGYDQLKCFVSSGSTSEMIQQFVEYLVEVSQESYGLLLDQFSDVFRQIDERVNEVRKEMQNVLPGFAFKKSVERLRKGIKKVLQKDELANKGVADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIZ6</accession>
    <name>A0A7D9EIZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054173</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006084">
        <property type="protein sequence ID" value="CAB4008307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EIZ6"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="10584" checksum="F03DA712245B08A1" modified="2020-12-02" version="1">MSTYPSMWKIAEVVPPHKEGNPEIASNNRPISVLSCLSKICDKVALNQYTEHLTNHRLLTEHQSGNQKKHSTETLNIAVTDMLLEAMDNKQLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENM9</accession>
    <name>A0A7D9ENM9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Phospholipase A2</fullName>
            <ecNumber evidence="2 7">3.1.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A079297</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15801"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28868"/>
            <dbReference type="ChEBI" id="CHEBI:57643"/>
            <dbReference type="ChEBI" id="CHEBI:58168"/>
            <dbReference type="EC" id="3.1.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The N-terminal C2 domain associates with lipid membranes upon calcium binding.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.4" evidence="2 7"/>
    <dbReference type="EMBL" id="CACRXK020007415">
        <property type="protein sequence ID" value="CAB4012184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENM9"/>
    <dbReference type="OrthoDB" id="61560at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047498">
        <property type="term" value="F:calcium-dependent phospholipase A2 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005544">
        <property type="term" value="F:calcium-dependent phospholipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046475">
        <property type="term" value="P:glycerophospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00147">
        <property type="entry name" value="cPLA2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd22124">
        <property type="entry name" value="F-box_FBXL13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:001152">
        <property type="entry name" value="F-box and leucine rich repeat protein 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:001681">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1090.10">
        <property type="entry name" value="Cytosolic phospholipase A2 catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057207">
        <property type="entry name" value="FBXL15_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006553">
        <property type="entry name" value="Leu-rich_rpt_Cys-con_subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002642">
        <property type="entry name" value="LysoPLipase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10728">
        <property type="entry name" value="CYTOSOLIC PHOSPHOLIPASE A2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10728:SF40">
        <property type="entry name" value="PATATIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25372">
        <property type="entry name" value="DUF7885"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01735">
        <property type="entry name" value="PLA2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00367">
        <property type="entry name" value="LRR_CC"/>
        <property type="match status" value="13"/>
    </dbReference>
    <dbReference type="SMART" id="SM00022">
        <property type="entry name" value="PLAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="FabD/lysophospholipase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51210">
        <property type="entry name" value="PLA2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0106">Calcium</keyword>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="912"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4012184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="912" mass="101724" checksum="74CC8B9CEE09F254" modified="2020-12-02" version="1" fragment="single">MEQFEIIPEHVKVLTVTVVRATGVSVGGFGNWETPDPYVMLRVRSSPNAKQRTTTKGDDVNPVWNETFNETRELRFSYDICDEEKEFLKKRSEVVLKKFSKLGLGEKTPRNKNEVPVIAIMGSGGGYRAACGLSGVMVALQESGILDCATYVTGLSGSSWYISSLYIREGWPDSITCEEMANDLKKRFDTSLFSHFQYDFKRRMDEKAKGGQPVRFTDFFGMAIGDALLPNQNCKLSFQDGKIRHGEVPLPITTAIRVRKDIPAGAFNEWVEFTPYEFGTAKYGVFGNITDFGGKYYKGQLVKRYQESPLHYLQGIWGSAFSIILATLNSGQKKTEGQRQEEIACAMLKDAEKCKTEEHDSEDEETPEDEVDCTLSKVTLGLGEISAKIRKVVRLSLLRMVFVGWRTVVVDSKKTREYFERIERGEVIDTGDYKDFFETAEDGKDVISSLPKHVALLIFSNVDIQDLGRCASVSRSWKLIIQSSLLWSKMDFTRMKYKLTNKITSRLVHRYRSVLGHLNLRGCCNLSQGSLKIIGESKNLQDLNVSECVGIDDDVVKSIAAGCSSLLYLNLSRCKISDATLRSLARNCVNLQYLSLSGCAGFSDKGLSYIAHGKGARKLSFLDLSGCDQVTEHGFMTISIGFLSISTLILNDLPSLRDDHLKMLTDKCNSVKTISILNSPLISDAGMKYLTKFRRLQKIQIEANNRITDSAVKAIAKSCPELRHVFIADCPRLTDLSLKALASCKYLIVLNIADCVRIQDAGVRQVVEGPSGARLREINLTNCVRVSDVTLLRIAQRCHNLTYCSVCYCEHVTDAGLELLATLPSLVSLDISGCNIQDHGLSSLGNSSRLRDITLSGCRAVTDLGLQKMFQQCRYLENLDLSYCEGITDYAIKNLAFCCRLLRTLNVAGCRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EQG5</accession>
    <name>A0A7D9EQG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">WD repeat-containing 54-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A005387</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008127">
        <property type="protein sequence ID" value="CAB4014047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EQG5"/>
    <dbReference type="OrthoDB" id="756370at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031514">
        <property type="term" value="C:motile cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050630">
        <property type="entry name" value="WD_repeat_EMAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049546">
        <property type="entry name" value="WDR54_beta_prop"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13720:SF40">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13720">
        <property type="entry name" value="WD-40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21031">
        <property type="entry name" value="WDR54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="WD repeat-containing protein 54 beta-propeller" evidence="3">
        <location>
            <begin position="1"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4014047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="25036" checksum="7221C4DC19AEA87D" modified="2020-12-02" version="1">MFEQDGSVMIFWHSVSQPQENKSFSYFARGICSTLNRFICVGTCTGSILVFDVPPQGTAVKLHETLDHHKVGITDLASVLDKMVSADEDGNITVWQCDETSRQIAEIRGSGTPCMSLALWNGFITAAYSSGHIRIFDLALGILKTEICAHSRCVNSLDIASETGLLLSVGEDSFVRVWVLPKDSANKVELLFQSPVSDSQLCGGRFLDESGQSFGVSGYDLAEIVVFGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESB9</accession>
    <name>A0A7D9ESB9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008769">
        <property type="protein sequence ID" value="CAB4015573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESB9"/>
    <dbReference type="OrthoDB" id="5978065at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006578">
        <property type="entry name" value="MADF-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21505">
        <property type="entry name" value="MADF DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21505:SF12">
        <property type="entry name" value="MADF DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10545">
        <property type="entry name" value="MADF_DNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00595">
        <property type="entry name" value="MADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51029">
        <property type="entry name" value="MADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="206"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="220"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="36820" checksum="1AC6F9325AD2DE50" modified="2020-12-02" version="1">MQMAKTRANSGHWHRSKLRRLEEDTYCKGSSNGSRYNVKYYKQNVTLPPLQLFLGEQKWRKKTNTVQKCKNKKVCWTVEEEELLVELWPNYECLYKTNSPEFKRVDKRQSAREDIRRKLETELESSFTDADIKAKISNLRTQYGKEMGKVRASVASGAGTSSVYEPSWRFYNSLHILRDSITPVKTKPTSGVPEVRLTLVASELASSEVQLEPSEDTNNSDDNSQNDPSKSVKSKANVREKMENIVLQKSLTVLDKLATNKRKHSEELDADETFGMHVAHSLRQIEDRRTKDSALLFDAECSGQDQLPSASWASESRRLMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EUF5</accession>
    <name>A0A7D9EUF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A077857</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009574">
        <property type="protein sequence ID" value="CAB4017509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EUF5"/>
    <dbReference type="OrthoDB" id="10065625at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006585">
        <property type="entry name" value="FTP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22633">
        <property type="entry name" value="F5_F8_type_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00607">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0106">Calcium</keyword>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="986"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4017509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="986" mass="111580" checksum="758292BA308447E6" modified="2020-12-02" version="1" fragment="single">LAILPQKLCYIWIATLDFKQRKFNYPLNYRYGLNLQYDRKSSHVFLLILLAGDVATNRGPVSSHAKTNYGLKVLYLNARSLKAFVALDESKTNVCKITLFQQLVQSGIYDVVCVCETWLNNTVLDSELLQDYCIFRKDRVGRVGGGILVATKLNIRATRRLDLEKQDAEFVVIELIKPNKKSVLLYTFYRRPPDSTTEPLQHLNTSLQNTSESSCCVVVGDFNLPAIDWSNDSTAPINKGERAIEVIDEVNIRSPEEYEEVRHLIRKKYSALKKYRQNKCETRKQKLRSLSDAVKSLVKKKHREYLRKIETSFATNPKLFWTYHKAILHSRSKQTSDIVFNGITAKSSAEKTELLNSYFSSVFTTSSTDIGDCDGEASETESGLGELTVDVAEVENYLRNLDITKASGPDKIPARLLKECGRQIAPSICELFNVSLRVGRLPVEWKSANVTPVHKKHLKELAENYRPISLLPIIVKLLERCVCRRLYEHVISAISLGQHGFLRNRSCTTQLLQVLHKIGENLDSNIQTDIVYLDVAKAFDSVDYLTGRTQRVVVDGVASGWSSVTSGVPQGSILGPMLFVLFINDLPDIIPEKSEAAFYADDTKTFRKITCEDDARQLQQTLTNLATWSNTNNMRFNELKCKVLTVSRKKQPVDFTYRLGSTTLTHVEKEKDLGVTMTGNLSWDSHIHEITAKANKLLGLLKRTCPFLTDVNVRRTLYLSLRRATRWILKARKGDSSYNERLVDLNLLPLCYDREIKDLMFFYKALYGCPLHNGRLLKQQISTEHSVLLLLETTTDTSKTIIPPGAINYALLGYATQSNTSRAGYAYKAVDGNRSGNYDDFSCTHTPTEENPFWSVSFEPRSVNVSAVRITNRQDCCQDRLSDFEIGIGEYFGEEAEKSPKCGGLHTINGNSKVISCPNMVDRFLTIKIRGQHKSSAPVSIHTFMLNTTYSTPCHHVLLNKIKNSLIIPKEKTKVITTVLITTVWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EUW4</accession>
    <name>A0A7D9EUW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Calumenin-A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033444</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009911">
        <property type="protein sequence ID" value="CAB4018224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EUW4"/>
    <dbReference type="OrthoDB" id="293868at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10827:SF52">
        <property type="entry name" value="IP16409P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10827">
        <property type="entry name" value="RETICULOCALBIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16638" checksum="8A9F0CBDC7D5B328" modified="2020-12-02" version="1" fragment="single">MSFGVHLVLFFAFANIITASIEQHHADHLSTHSHYEGGEHNPEYDHDAFLGPKQAKEFETLSEEEAKKRLRAMVPKLDTDKDGEISLAELEAWIDKQRKIFMYDAVDEDIEVQDHDGDRMISWNEYMKARFGESEHDNFPKDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZY6</accession>
    <name>A0A7D9EZY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Zinc finger MYM-type 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A071582</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010804">
        <property type="protein sequence ID" value="CAB4020146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZY6"/>
    <dbReference type="OrthoDB" id="5984651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042838">
        <property type="entry name" value="KIAA1958"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021893">
        <property type="entry name" value="ZMYM2-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963">
        <property type="entry name" value="SIMILAR TO RIKEN CDNA E130308A19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12012">
        <property type="entry name" value="DUF3504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0832">Ubl conjugation</keyword>
    <feature type="domain" description="QRICH1-like" evidence="6">
        <location>
            <begin position="44"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="ZMYM2-like/QRICH1 C-terminal" evidence="5">
        <location>
            <begin position="170"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4020146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="47726" checksum="718496152039DC0A" modified="2020-12-02" version="1">MDWDDDYHDESEFYYPEELENGPENVNINTNEDDNTENYALENIQDYIMAQRPESTVKKTQYDMTVWRRYLDSINERREVENIPSDELNVLMCRFFMSVKKKDGSHYEPVSLTSFHRSLQRFLNDKGSHQNLLKDQQFKKSREVLSARKKKQLVVENAKGNRPQAARELTAEEEDELFRLGEFGDSNPEALQRTVWWLLSLHFGFRARDEGRRLKWGDEKLCKDPTTVNEFLLWEAERGSKTRHGDDYYRAFNPVAQATSNDRCPVKFDKEFSRRRPDEMKTAESPFYLAINRKRVPQNPIWYAKGPLGKNEIGKFLVNAAKNADIQGNITNHSVRKTCISPLMEANVLTNYAAQLSGHRNLKSLDSYKTASVVHQRKMSRILGRSGEQFGQENTRIDQAIGPIFKHNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HEY3</accession>
    <name>A0A7D9HEY3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin fubi and ribosomal S30</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004721</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000161">
        <property type="protein sequence ID" value="CAB3979028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HEY3"/>
    <dbReference type="OrthoDB" id="199599at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006846">
        <property type="entry name" value="Ribosomal_eS30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000626">
        <property type="entry name" value="Ubiquitin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12650">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12650:SF15">
        <property type="entry name" value="RIBOSOMAL PROTEIN S30, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04758">
        <property type="entry name" value="Ribosomal_S30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00240">
        <property type="entry name" value="ubiquitin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00213">
        <property type="entry name" value="UBQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50053">
        <property type="entry name" value="UBIQUITIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="14761" checksum="F1AD39D066F259C0" modified="2020-12-02" version="1">MQLFIRGAELNVVCVDECLTVDGLKHQIADLEGITVEDQVLSFGGKPLEGESTLVEYGIHDSCTLDVVGRVLGGKVHGSLARAGKVKGQTPKVDKQEKKKKRTGRAKRRMQYNRRFVNVVQTFGKRRGPNSNAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HRL3</accession>
    <name>A0A7D9HRL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044812</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001281">
        <property type="protein sequence ID" value="CAB3988105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HRL3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13944" checksum="574BDC06A2A3567B" modified="2020-12-02" version="1">MVEAQAEMEEEDFDLILSLDDTDAEKDDKTSPVIRQSTDAFTINEVIAVLERISSSTIKSEAETATTILRNTRGKKDFATLDCFVSVFVEAFNQCNGSVKKFKSDSVRAIRLEKKFPTLRNDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HRQ1</accession>
    <name>A0A7D9HRQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A039537</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001289">
        <property type="protein sequence ID" value="CAB3988165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HRQ1"/>
    <dbReference type="OrthoDB" id="5986860at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058056">
        <property type="entry name" value="WH_TANC1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039:SF16">
        <property type="entry name" value="GPI INOSITOL-DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25521">
        <property type="entry name" value="WHD_TANC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="2">
        <location>
            <begin position="271"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="domain" description="TANC1/2-like winged helix" evidence="3">
        <location>
            <begin position="591"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3988165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="673" mass="76885" checksum="C89D2CAC072B8C71" modified="2020-12-02" version="1" fragment="single">MPHSRLSDPEYRNWVTVGRAIQITRNGLETIIQDAADKYHTSLLANLPNNVPAWESHLENDHRSTNKRKISWSNSDNTQWLTVGASWEIAKIFMAPLGPRKLNVVNAKTTDISGLLNVLEWSPRGTNDPELNGDKDVQDAIKELSSLSHTGLAVIEEKELEVIAQLQRELGQDINILKSDMTFWKDQVEVTLEQIEVLRKSLGEFVTKNELHDTLEIVKKEMKDWKVATNSRLENIEKAMSESQQLSCDVKQELKFNPVSDRMKEEFVGREWLFSDIDNWLEKDLGPRESRAFLIWGGAGTGKSSFAQEFVRRHEGEKLAGYHYCQKDNPRTCDLKSLVDSLSSMLSKTLPEYASLIQKVQTEQFRDDPNALFDSLITTPLQQLNETTKHFLVIDDLDEGGYKIASCFARLSGTLPSWLRVILTARHNAPALSGIYLNSVLAKLDQFETSPQSLSSKDIREFVSMKYRKLQTEYNCIPSFFANDEQVGQEKIVQASQNCFLYAKLVMEQFFDGHNEIGLPASLSEIYCLDFRRHFSDIEFFEKKVAPVLQIVLAIQFAKAFIDKEMYIFLLEPSEFKQAYEESEESATEVVKGGLLPEIKMHDLNKVVKPLSGYLVKDDSGKYYFSHSSVRDWLQDEESAFFCDVLNGHSIMANYNLKTLKVKYPSPGDFFEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I182</accession>
    <name>A0A7D9I182_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008589</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002386">
        <property type="protein sequence ID" value="CAB3994070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I182"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="36480" checksum="4EF533A4F9DBA801" modified="2020-12-02" version="1">MIPQTVSWTSENEQKIADSSKTIAELYNSYFVSVFSIHQNTQNDQEGTNKNDEPNIEELEITLSELEVFSALRALDPDKALGPDGIPSRILKETAQQIAPSLTLLFNKSINSGVVPDEWKLANVVPVYKRGEKEDVQNYRPISLLCIVSKLLERCVLKHIWEHLRVILNECQHGFVPGKSCTSQLIGVLDKIGRLLDRGEQIDVIYLDMSKAFDRVNHEILIEKLRHLGFKTNLLRWFKSYLYHRRQQVTVLGATSPTLPVTSGVPQGSILGPVLFLLYVNDLPDKISSSSIAAFADDTKIFKRISKKALLPTVKEPGRSTDKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I758</accession>
    <name>A0A7D9I758_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A032577</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.49" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020003436">
        <property type="protein sequence ID" value="CAB3998769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I758"/>
    <dbReference type="OrthoDB" id="5979826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="9">
        <location>
            <begin position="388"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="68"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3998769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="832" mass="93497" checksum="BF0EF224412EFEE3" modified="2020-12-02" version="1">MDVFVTRLRTLSKTCVFGEQTDEAIRDQAIDKCVSKELRRRLLREPDIDLSKLLTISRAFEQSHFQAQEMEQPFTQPSDSINAIRPRYNTENSGGSRRETPSHINNNTGASRGASNPSLYNQSKQEFTRWRSQPCYCCGNTGHRAKDVRCPANGKTCRSCNKVGHFASVCRSRPKPANYTSPPQNQALQVSEQNNATSYSDDDECIFRVQQFPNLPTTDINVDGLSVPVVIDSGATVNIADIDTYYKLRTLRKVEIMPSNIRLFTYGSTIPLNILGTITVKVERNGKQILAQFVVVNNRGTGCLLGHKSATELDLLHVANSVSIQSEDISSKISAKFPKVFEGVGKLKDFQQTIHVDPKIHPVAQAPRRVPFHVRRKVEAKLDELQRLDIIEPVTGPTPWVSPLVVVPKPNGKVRICVDMRQVNTAVIRERYPIPTVEEILQDLTGACVFSKLDLRWGYHQIELDEQSRHYTTFATHTGLYRYKRLMFGVSAAPEIYQHVIQQSLQGCPGMRNISDNIIVFGKTQQEHDHNLNTVLATLQECGLTLNRDKCKFNVSEVTFFGYTISANGIRPTDETVTAIRNAPKPSTASEVRSFLGLVNYCSRFIPNFSTVAAPLRQLTHKGVPFTWTKLHQNAFESLQKTLTSNSVMAHFDPSAPTQLRVDASPFGLGAILIQTHGDETRPVAYASRTLTAVERRYSQTEREALAVVWGCERFHLYLYGTTFDIYTDHKPLEIIYSPTSKPPARIERWGLRLQPYKFCVKYSPGIGNPADVLSRLPLPNATTTTRNTAEEYVQFVAQNAAPKALSFSTIKEATNQDPVLQFLRECIMKNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9N0</accession>
    <name>A0A7D9I9N0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067603</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003721">
        <property type="protein sequence ID" value="CAB3999980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9N0"/>
    <dbReference type="OrthoDB" id="5982559at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="502" mass="57520" checksum="575E6C0AAF6152B0" modified="2020-12-02" version="1">MVERRFSRLSTILVVFLSLFLLVESFKPCRRLVKGASCLMCALKLDIKQFPTRNTPGLPRHSPSTTKASLPPSCKLKVSLHLLKLSMVASSLVLLSGDVSLNPGPYADDLPKARGFKVAHLNVRSLVNKLDDISHLVRSKSFDIFSVSETWLNPTILDTEIDIPGYTLAGFTDATITWFKSYLYQRIQVTRVDNATSSAKYVSVGVPQGSVLGPLLFILYVNDLPSCIKKCKVTMYADDTVLYFSSSTLSGLEENLNADLEILRRYLNDNLLTLNAEKSKFVIFGSTRKLNSFREFSLEINAHNLERRDTFKYLGIKLNQNMSWSDQIDALSKKVSQRLGVLRRVKYLLPPHGRLAIYNSLILPLFDYADIVWGDKNNKVLMHNLQVLQNNAARTILDYPKYFSGTEALAQLNWMPLSERRRQHRCIGIYKCINKYIKYQFNLVQNVEIHSHNTRRRQDLHLPRSRTNWGKQRYIYQAVVDWNNLNLDQRQSNNLTSFKNSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDI4</accession>
    <name>A0A7D9IDI4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080774</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005076">
        <property type="protein sequence ID" value="CAB4005026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDI4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8523" checksum="1E486F04E66ED76F" modified="2020-12-02" version="1">MVIAVWTNSSRALSWKGTRATSTTLLFPSSVALLKPLPAAVSLPSQKKHLEISESLLTFLRTVIGSIFGYKGRFELDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9II11</accession>
    <name>A0A7D9II11_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Chromatin-remodeling ATPase INO80</fullName>
            <ecNumber evidence="11">3.6.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A073484</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">ATPase component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">Component of the INO80 chromatin-remodeling complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="11">The DBINO region is involved in binding to DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the SNF2/RAD54 helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="11"/>
    <dbReference type="EMBL" id="CACRXK020006982">
        <property type="protein sequence ID" value="CAB4010975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9II11"/>
    <dbReference type="OrthoDB" id="6020582at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031011">
        <property type="term" value="C:Ino80 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006338">
        <property type="term" value="P:chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10810:FF:000005">
        <property type="entry name" value="Photoperiod-independent early flowering 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="entry name" value="Tandem AAA-ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020838">
        <property type="entry name" value="DBINO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050520">
        <property type="entry name" value="INO80/SWR1_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45685:SF2">
        <property type="entry name" value="CHROMATIN-REMODELING ATPASE INO80"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45685">
        <property type="entry name" value="HELICASE SRCAP-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13892">
        <property type="entry name" value="DBINO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51413">
        <property type="entry name" value="DBINO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="3 11" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9 11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 13" id="KW-0347">Helicase</keyword>
    <keyword evidence="4 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="193"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="12">
        <location>
            <begin position="214"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="12">
        <location>
            <begin position="228"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="668"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU368001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4010975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="668" mass="77846" checksum="7BC28932A9FF83FA" modified="2020-12-02" version="1" fragment="single">MTADSVMKIIFSLKHRSAILLQTVVLGSYCSTKAPFKEQWLRWWSKPIRPTNKQRWSCRQEAEKVFTEDLSGTDESELSDLDREFGVNITPAYKHWPIGNEDGLEESSWDKSNLYNFSKIKKNREWLKEILLSESSESSDEEHDPVTEDDFKEMLQLHKEQKLCRRKYMLDKNLDRYKHYSIGLLSGQDKFHEIQRPRVPKKLKEKADTAEKGKVKKEKLKGKKKKKGTDEEGVKKTADEKTGKKRQSRAKDADVRRRKIWAYISRKEIPRTQRQKTTARNTSLQNAKKLAQLCQKEMKREALRSQKVGAQTVPRARRLAKEMLVYWKKYEKVEKEHRKKAEKEAIEQRKIDFEMNEAKRQQRKLNFLITQTELYAHFMSRKLKGPGSSDAAQVDGILKKLEVRLPGSKLKNMGGGLVIDLEHNDDYDSEQMKNQALQNAKQAFNAHENWTKAFDDGEKKQNNQQNFDQAFSLANPSIKGQDVPQPMIFDGLLKSYQLKGMNWLVNLYEQGINGILADEMGLGKTVQSIAFLSYLAEAHNIWGPFLVVAPASTLHNWQQEVTRFVPTFKVLPYWGNQSDRKSLRKYWNRKQSDVHDRENAPFHVLITSYQLVVQDVRYFQRVRWQNLVLDEAQAIKSSSSVRWKILLGFTCRNRLLLTGTPIQNSMAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IIR7</accession>
    <name>A0A7D9IIR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005925">
        <property type="protein sequence ID" value="CAB4007822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IIR7"/>
    <dbReference type="OrthoDB" id="1302433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="425" mass="48607" checksum="DFCFBE42B3B6AFDB" modified="2020-12-02" version="1">MGEDFAAMINECYDLGCLTMSQRKGLITLLFKRVDSNNTKNWRPITLLCADYKIASKLLLTFSFQLNSINVTRGVLQDCPLSRLLYVLVIEALAIIIQKYPDIDGYPLPDGTRQKLCQYADDTMALVTSGRSITKPFSTFTRKKREWLARASVTQPIKDAGRLGAVDGDKKIMSLHYLWIKRYLLGPRHGWHSFLEFFVRRAFPKKNSLLEVLLSKTLATRSLKLLPAFYKSVLITWIKLLPTFDRIWQIPTTPDVSRSLLTQLSAHGILPTADLLIRFAQRVDPVCHCGCPESLVHLFTECSLAIDVFDWFHCLLKRFLPQCKYPTDTEFLFGFYPARRIPLVYSALLGILRHHLWLAQNAFRFEGTEPDLDTVIGKIKSTSHFLIMRQHRNCRSGDFQRELLADSVLGCITSGNNLTLDPPWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJ43</accession>
    <name>A0A7D9IJ43_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Bcl-2-related ovarian killer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A068951</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Bcl-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006905">
        <property type="protein sequence ID" value="CAB4010787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJ43"/>
    <dbReference type="OrthoDB" id="5947850at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005741">
        <property type="term" value="C:mitochondrial outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051400">
        <property type="term" value="F:BH domain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097192">
        <property type="term" value="P:extrinsic apoptotic signaling pathway in absence of ligand"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008630">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to DNA damage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001836">
        <property type="term" value="P:release of cytochrome c from mitochondria"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06845">
        <property type="entry name" value="Bcl-2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.437.10">
        <property type="entry name" value="Blc2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036834">
        <property type="entry name" value="Bcl-2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046371">
        <property type="entry name" value="Bcl-2_BH1-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026298">
        <property type="entry name" value="Bcl-2_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002475">
        <property type="entry name" value="Bcl2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11256">
        <property type="entry name" value="BCL-2 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11256:SF48">
        <property type="entry name" value="BCL-2-RELATED OVARIAN KILLER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00452">
        <property type="entry name" value="Bcl-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01862">
        <property type="entry name" value="BCL2FAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00337">
        <property type="entry name" value="BCL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56854">
        <property type="entry name" value="Bcl-2 inhibitors of programmed cell death"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50062">
        <property type="entry name" value="BCL2_FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0053">Apoptosis</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4010787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="26651" checksum="F3738C96507983B9" modified="2020-12-02" version="1">MESNDRAILKASFRKDEFSFIMEVDKVELSLSDQCLYYCMKCIEQSTDNILGYRIDFDFKASRVVGDIYVDRAMKICNVCKLFQIMNPGLFDHLQDKLQDSLRTKSSVCNALSSMQAFMFQDSISWAKIIALFAFTGALVVECILRGNCDYVVNIMYSVKQFMENELVAWITKNNGWAGMLQQFESLDVNRPQDESGGLLRNIKTFFRQNILDATQRMVYSLQDAKFLQNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IMT3</accession>
    <name>A0A7D9IMT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006418">
        <property type="protein sequence ID" value="CAB4009331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IMT3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18640" checksum="71965EB1E5908503" modified="2020-12-02" version="1" fragment="single">MEQIRVELVDQNKVLSSKVEALELDLKTCKLNLHELEQRNTINYSNQQCGSITPKGDRSINSQIEPNNNTKVEAKINYANSHTFNQRKEINQETKRNNCELSLDQSCIVVEDQSTDINLSRSQQVSKQNEDRCGLPTIIFNTLHQIPQHDLTNQYSIPMRIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRA4</accession>
    <name>A0A7D9IRA4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A082702</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoplasmic ribonucleoprotein granule</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DNA2/NAM7 helicase family. SDE3 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020009299">
        <property type="protein sequence ID" value="CAB4016888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRA4"/>
    <dbReference type="OrthoDB" id="6513042at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036464">
        <property type="term" value="C:cytoplasmic ribonucleoprotein granule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032574">
        <property type="term" value="F:5'-3' RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031047">
        <property type="term" value="P:regulatory ncRNA-mediated gene silencing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18038">
        <property type="entry name" value="DEXXQc_Helz-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000608">
        <property type="entry name" value="Mov10 RISC complex RNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049080">
        <property type="entry name" value="MOV-10-like_beta-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026122">
        <property type="entry name" value="MOV-10/SDE3_DEXXQ/H-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047187">
        <property type="entry name" value="SF1_C_Upf1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45418">
        <property type="entry name" value="CANCER/TESTIS ANTIGEN 55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45418:SF1">
        <property type="entry name" value="CANCER_TESTIS ANTIGEN 55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21634">
        <property type="entry name" value="MOV-10_beta-barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0347">Helicase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="10" id="KW-0943">RNA-mediated gene silencing</keyword>
    <feature type="domain" description="Helicase MOV-10-like beta-barrel" evidence="15">
        <location>
            <begin position="362"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2/NAM7 helicase helicase" evidence="13">
        <location>
            <begin position="505"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2/NAM7 helicase helicase" evidence="13">
        <location>
            <begin position="618"/>
            <end position="696"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2/NAM7 helicase-like C-terminal" evidence="14">
        <location>
            <begin position="727"/>
            <end position="921"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="980"/>
            <end position="1000"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="12">
        <location>
            <begin position="990"/>
            <end position="1000"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF13086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF13087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF21634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB4016888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1000" mass="114338" checksum="23B32CB3CE417554" modified="2020-12-02" version="1">MPRNRRRSRLNQAMRENLRVADKFWRYMKDSDQLLGTRTELRQFYQTSFWPTLTDPLQRKVAFCSIMYCFRSEHMKIIEWKEANDRENIVYRPGRRVAVDQSYVLRRERQESQEPEEENLGDFAEIKKKLVSPRHRLQMTKDKGGISILPEPDKDGIVHMDVNAKIIQLTVTNQTDTGVTLRCAVLGSPGPFEVDNLIHRIVTDSKAAMLAGNDRIDFTVTLAGSANPGVYRMPVAFEFYRDYEEPFYIVKYIVANVVDDIVARLQPTTPYVRPKPFTIVHEPDVATERGQPPCLEKPNYIVPLPAYQIPPNLRHQMNIGQLQAVFETYEDGENYTPASYCEKFSKLLHVEELQMEHDIAKYQMEKTKLKKPKDRKDQGYLTLEVPGLAEKRPSLVRGDHLFVRKLAADGTPAEKKRYQGYVHRVELNQVFLKFSADFHRNYIQNSSYRIDFKFSRTTLQVMHRAIQQAVPYLQLIPFEGQPSCVNNAMQAVRLNRCFDKKIEENAEQRQAVKNILEGTSKPYPYLVFGPPGTGKTVTVVEAIKQVLQNYPDSKVLACAPSNSAADLILERVAQHQVVPKAQMVRLNAFGRSESSVNKNVLEYCIGDGDGYFRLPGKEHIERNYRFVVTTLITAGRLQSLGIPKSHFTHVFVDEAGQGMEPECLVPIVGLLGTGDDNAGQLVLAGDPKQLGPVLRSPMAIKFGLGMSFLERLMGPNFGCFNRQRSSNQYDPKLVTKLLNNYRSHPAIIKIPNELFYDNELRPCADEVLRNSLCHWSELKKKGFPVIFEAVCGKDQREEKSPSFFNPEEVSVVLRYVRELKDARGIPLKTSEIGIISPYHRQVQKIRQELQKKPVNIQNIKVGSVEEFQGQERKVIIISTVRSNEEFLELDAKHKLGFLRNPKRFNVAITRAQALLIVIGNPNVLCHDPNWRKFLQYCMDNGSFSGSSGSGGRPFQMPEDADQSLAEKLAKLRLNENSLFEEESDLTGADYENRPWRSDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IVK3</accession>
    <name>A0A7D9IVK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076617</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010619">
        <property type="protein sequence ID" value="CAB4019776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IVK3"/>
    <dbReference type="OrthoDB" id="6099050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF13">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="25331" checksum="3BF8D5E84F7075BA" modified="2020-12-02" version="1">MAEDEEDLNRLNNFDREGLPNSGSEREIIEYYFHKGFEYKNIVLFLQRYHGIRLSERTLKRRLKDFGLQRRELVDENVEGRARNIIKEELSAGPDSLNGYHVFQTDLDKAKQHWNSHRIRKSHETTIPGVPDILYFLPEQSGGDRQDCLAQVPLCKLEEVEQQILGGSREEETDEVWEEYFHYVMENNGLTYPTTIFEAGELFQSLVNFATGLTEAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IX00</accession>
    <name>A0A7D9IX00_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transient receptor potential cation channel subfamily M member 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A044706</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009243">
        <property type="protein sequence ID" value="CAB4016755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IX00"/>
    <dbReference type="OrthoDB" id="301415at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="11"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="11"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4016755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="41113" checksum="5AFBF48ABC8E44E8" modified="2020-12-02" version="1">MKCQAAWNKLKEQMSGKRTRNDVSRKNKNGSTPHEIIVQRLASEADNKQTYRPVQPREFVDFEFEDLSLVNIKKACAVHFNLPASTCDVLVSSKGPSCTHISQIPHRKDKVYLVRFVVLQEDQVEQEYEMNTSKVNNLSTPTPGSLCQKKPEGTKIYPSSISIASLLKAGKLVKPREKNKVTLALENFDVSTQQWVEVAAEEFAIDIQKFSSGAFRDAFRASTIKPTKCEDWVVKTYNDDAVKTIQETANSSIEDHCRKQVQMHSVARHIAQRFKAKAPPGFGECFDYNRCYYTMYKSQLLLKNIQGSDYTLYDLEISTAELFDGDTAELYFCCGNCSSIGIQAFLKSHKCNEYCKLIGVCDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IXH2</accession>
    <name>A0A7D9IXH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032306</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008712">
        <property type="protein sequence ID" value="CAB4015427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IXH2"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="426" mass="47626" checksum="C92F920FF8A61AAF" modified="2020-12-02" version="1">MNIIYATQKRALLLHYAGPDVDDIFETLPDTGEDKDYKKAVECLNTYFVPKVNMVYGEYQFHQAKQRSNENLASYHTRLRQLAKHCGFADVDKEIRTQIVFSCTSHKLRLRALREDLSLTALLEAGRVAEITDRQARDIQPTSTDQSVNALPSRSKPYPVHPDQHDPPHTPNNQRTHTHSLCRNCGGPFPHAISYPANGKTCRSCGKNGHFAKVCRSRRQQRPRFVQQIADDPEQDPAYTFVIHSEQTVLNTSWPFSAPLRHSPSCIVNIDGQPIFVLVDSGASANLLDETTYNSITHNTRLSAMLNPPTTKIYSYGSTTPLPLLGSWSTSVRYKSTTVNATFHVTKGNSGNLLSCTTAQQLNLLTLNVNSTMSGQTILHAFPHLFDGIGQVKGKEIKLHISNTVTPKQQPQSRSHFHLVKTATNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IYH0</accession>
    <name>A0A7D9IYH0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RalA-binding 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010312">
        <property type="protein sequence ID" value="CAB4019133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IYH0"/>
    <dbReference type="OrthoDB" id="10033734at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007264">
        <property type="term" value="P:small GTPase-mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.555.10">
        <property type="entry name" value="Rho GTPase activation protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039767">
        <property type="entry name" value="RALBP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049041">
        <property type="entry name" value="RalBP1-like_Ral-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008936">
        <property type="entry name" value="Rho_GTPase_activation_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000198">
        <property type="entry name" value="RhoGAP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12783">
        <property type="entry name" value="RALA BINDING PROTEIN 1 RALBP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12783:SF5">
        <property type="entry name" value="RALA-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00620">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20924">
        <property type="entry name" value="RLIP76_Ral-bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00324">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48350">
        <property type="entry name" value="GTPase activation domain, GAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50238">
        <property type="entry name" value="RHOGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="325"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="380"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="325"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="380"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="418"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="485" mass="56287" checksum="C3709885B298F0BA" modified="2020-12-02" version="1">MFYKFRTKTKKSKKEKSVKKESKKKSKTKKQEKGKVEKEKEKVKEKDKKKDKKTESPKHQQALPVFGVTIEEAVQRSMLPDGVQLPRIIRECIIQLEDKGLSQEGLYRLSGVKSKIEQLKELYNQGKNADLDEFEPNILAGLIKLFIRELADSILPDEIAQRFEEAAAIPNRQEKINQFKMLIPELPVPNKTLLSWLMVHMLHVLQKGPENKMSIQSIGIVLHPTTGIAQPVLNVLLNNISTLFGETQLTRYEYSVKPEVDISSLSTPEEIAAELTRQEEILAKLHEDMKKGTPDETEDKDEELWEVQRKVTMLKRKLRVAKRKQDAEVVEEQKKQEENKPPTQEDGEEETLKRLELEEMELRFEEEELLDVREQLERRLQNEKSEINRLEEEITEVNETRVNNSGVASDQNSSSASDDSESEDDDESELEEIMNELVKHNTELEEKNEKLFKQIHDEQETCVELKVQIRMVSATQKEETEKPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3D2</accession>
    <name>A0A7D9J3D2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A029549</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011236">
        <property type="protein sequence ID" value="CAB4021035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3D2"/>
    <dbReference type="OrthoDB" id="6477069at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16449">
        <property type="entry name" value="RING-HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051746">
        <property type="entry name" value="Kelch_domain_containing_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4021035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="576" mass="65613" checksum="1B758428B81CE281" modified="2020-12-02" version="1">MASNYPLGYDDERFESIVDQNFHCLICYNVLKDPVMCRRNQHYFCHGCITEHLRTNSHTCPTCADELSVETLAEVPRIVKNYLDERKIRCDHYDRGCRELVQLQNLKRHVAECGFTPVVCENQGCGETISKRDRTYHESELCQFRKLKCHNCGEISTMMADMQTEIANQNTKINTEMAHTDRKLKNMDTRITNIDTKQENMNTKQENMNTKQENMNTKIENLQANVEAKFEAMDNEVRGMKMSLNEVKDGFDHLKEAVLEKIESKERKQEEITRDVSGTASGGRENQHIFVAGGGGRNSVEIFNYRQRLWSLLKPMPGNRDEASLFVYNNHVTVAGGWCGAAVDNMTRIKIHPVPDLSINWSNFAAKLPAKMFAHSSVVYKDSLLVTGGYNVDQRVFSDCIHKVQLKPPHTVKLIYKMPEPRFRHSTVLCDDSILIVGGRKSGKCKDNLSSVLSYDIKKNECQQLPALPYPVSEMATVKWAENVVIIGGADKDGEPLNNVIIYNMKTGNSHMLPPMLHKRKECMAVVIENTIVVLGGADEKRNDLKSVEGFNFERFSWQELPDMKEARYLATAVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0U7</accession>
    <name>A0A7D9K0U7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Myosin-10-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A030432</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025025">
        <property type="protein sequence ID" value="CAB4039162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0U7"/>
    <dbReference type="OrthoDB" id="6108017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016459">
        <property type="term" value="C:myosin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000146">
        <property type="term" value="F:microfilament motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007015">
        <property type="term" value="P:actin filament organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.720:FF:000001">
        <property type="entry name" value="Myosin heavy chain, muscle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.720">
        <property type="entry name" value="Myosin VI head, motor domain, U50 subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001609">
        <property type="entry name" value="Myosin_head_motor_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140">
        <property type="entry name" value="MYOSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140:SF857">
        <property type="entry name" value="MYOSIN-11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00063">
        <property type="entry name" value="Myosin_head"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00193">
        <property type="entry name" value="MYOSINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00242">
        <property type="entry name" value="MYSc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51456">
        <property type="entry name" value="MYOSIN_MOTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0505">Motor protein</keyword>
    <keyword evidence="5 8" id="KW-0518">Myosin</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4039162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="24623" checksum="459D36BB794EA52C" modified="2020-12-02" version="1" fragment="single">MICTSPTYLLTVLTYLLCLLTVLVYIIAIFKVISSVLHFGNLQFKQERNADQATLPNNTIAQKICHLLGIPVVDFTKCLIRPKVKVGREYVHKSQTKDQAEFSCAALAKALYERMFKWMVHRINRCLDRTKRDGASFIGILDIAGFEIFKLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYRKEGIEWKFIDFGLDLQPCIDLIEKVRICS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LA85</accession>
    <name>A0A7D9LA85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histamine H2 receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A035449</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015671">
        <property type="protein sequence ID" value="CAB4028718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LA85"/>
    <dbReference type="OrthoDB" id="5958759at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22750">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4028718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="35100" checksum="4A40F694F54B9EC8" modified="2020-12-02" version="1">MNNSTHEDVFQISCDSFGTTHFVITKLMSDKLLITRIFAIVLNSILITPTILLNAIAIITILKSSQLKSKPCYFIILVQSAIDLVVGVLGIPLYLAFLIQGITGTSNCVGAFLAKYSPVLPIGISTITLSAMTMERYIAILHPYAYSTEVTKKRILVYVGSGAVVTIFAIVLSFRIQFAIMMFGALLVPLVFVFTAFAYTRIYLVVRKLNRAQNKPSNVEEVNLTRKKLFLREIKQAKSCFIVVMCFFILSFLPAIVFTSNRNTDESEFLVNNVWVYTIAMSNSSVNSAIFFWTKTMLRKEAKKRLNFICER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHV9</accession>
    <name>A0A7D9LHV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Double C2-like domain-containing beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043033</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019857">
        <property type="protein sequence ID" value="CAB4034135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHV9"/>
    <dbReference type="OrthoDB" id="419768at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="14687" checksum="E2DD3C3F6B604C01" modified="2020-12-02" version="1">MGNGAAVPSNSRQIGAAESDHTTALVTESQNIGGLARLAEAKSKFMNTKGRQEALKASKQIKGTNFIKELYHRLDPSIALPNAVDITGEIQVAMKYNREEKLLLLKLIQARELVPRDVIGYSDPYAVIKIVPDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJK4</accession>
    <name>A0A7D9LJK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019923">
        <property type="protein sequence ID" value="CAB4034212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJK4"/>
    <dbReference type="OrthoDB" id="10473615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="244"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="292"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="314"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="334" mass="37742" checksum="49FA80BA481DDAEF" modified="2020-12-02" version="1" fragment="single">MAVTVAARRLIGAYNRDCEYDILKNSMFELEKVFDDFCVINEEYELIVSDEKYAEHRVVNGEDIMTYRDNVKRCYREARSVFVSVKTTIEQKARQQSAGPVKVALKNDICRIHELITVVDESFKLENVNMAALQLDKNDLQSILNIICDNMAKLGSIETQEQVNLIQEDVDAIIRAVYNCIRKINLFLHEQQAFVKSLHIETATLPSETNTPPENINTVFPPEINTNIPLRTLRPSTPCLPQEINTNTPLRTLRPSTPCLPPEINTNTPLRTLRPSTPCLPPEINTNTPLRPSTPTPPRISTPTPPLRTRIPLTPCPPQKPTPPLRPSAPLPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LMN2</accession>
    <name>A0A7D9LMN2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001847</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022015">
        <property type="protein sequence ID" value="CAB4036418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LMN2"/>
    <dbReference type="OrthoDB" id="184876at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.30">
        <property type="entry name" value="MOB kinase activator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036703">
        <property type="entry name" value="MOB_kinase_act_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101152">
        <property type="entry name" value="Mob1/phocein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="79" mass="8990" checksum="72BD62E4F7594534" modified="2020-12-02" version="1" fragment="single">AMYSWPDEPFEEMDSTLAVQQYIQQLIKSDFENISLILEPPEGQDLGVWKYEHLRDGDGSTAKRTSLANANELLAKRSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNR1</accession>
    <name>A0A7D9LNR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Kinase suppressor of Ras 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061267</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022012">
        <property type="protein sequence ID" value="CAB4036415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNR1"/>
    <dbReference type="OrthoDB" id="10261027at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="67" mass="7389" checksum="13B4C11CBCA13A33" modified="2020-12-02" version="1" fragment="single">TTVASTVQEQQPSNLGEIPLEKLDVNWKDPVGMGSFGKVFRGNWLCTDVAVKQIRRGASVSESIQRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LSB8</accession>
    <name>A0A7D9LSB8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="2">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A051395</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020024359">
        <property type="protein sequence ID" value="CAB4038568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LSB8"/>
    <dbReference type="OrthoDB" id="5954453at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051603">
        <property type="term" value="P:proteolysis involved in protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd16541">
        <property type="entry name" value="RING-HC_RNF123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000133">
        <property type="entry name" value="E3 ubiquitin-protein ligase RNF123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045129">
        <property type="entry name" value="RNF123/RKP/RSPRY1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057987">
        <property type="entry name" value="TPR_RNF123/RKP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13363:SF5">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13363">
        <property type="entry name" value="RING FINGER AND SRY DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25576">
        <property type="entry name" value="TPR_RNF123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13920">
        <property type="entry name" value="zf-C3HC4_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RING-type" evidence="8">
        <location>
            <begin position="347"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4038568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="46200" checksum="E1A72DFE52C18B72" modified="2020-12-02" version="1">MASFFAENFCESKIVNPDLRDTIIQGLVTFSCYADCLKALEILPLTSQERVVSTLMGAYEKRTWVQTTWILIRFWKGCGFAFNYSLQPWGQMSGISDHGLQRVNLQPPCPSPVYQHVLAKLCSEDKVLSSGFLNGVLNQLNWAFSEFIGMLQQIQSLPNIAVENRQLKTCIVCFELTVGLLRVLEMVCTVAPQLFTDWENFPSAEMNISRLFQLVTQAFNRLTASANIFENVTRLHLPGFDCVDRLPLLSALAGIMLALLKRSKPASIDCACSVLFAEPGFQFESFQLLFDRESNGGKPVSGFSFSHYKVVSEKELQELEELSKILSTYKDQVHLKRQASFDTEELCTICYAMPQSAVFVPCGHKSCRACISRHLMNSKICFFCKETVEKFEDCSASQKDATKDTSSCVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LSM9</accession>
    <name>A0A7D9LSM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023749">
        <property type="protein sequence ID" value="CAB4038050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LSM9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="31966" checksum="C08B4C0A77099924" modified="2020-12-02" version="1" fragment="single">MMFMIFVVPILGVLLSLPSKLSAAESSGCTFVAKNTSIPVQKCLKLGYIRVAGRRVPLGVYEMRIQLEEPRREAVLYCGRYSGTYSWQFAKKDANQIRVSFLHGYLHINVYWCDSFSGPKNAGIHCVVEAFSTACPGRIGDNHTCVYEVQKKHFSSDTVRNAVEVKAEVAAQVKKADVSAGVTHTKEHTVVNTYSVKSRSYIVIPAGYRFCSFSEVNSVKDHLAATGFKWECKLPAYVQTSSITGRCTDLSLCETQSPCPSTDTQPFSSGDKSAVTHPLAIMLLPLFIIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LUD5</accession>
    <name>A0A7D9LUD5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tetratricopeptide repeat protein 7 N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024393">
        <property type="protein sequence ID" value="CAB4038610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LUD5"/>
    <dbReference type="OrthoDB" id="29013at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045819">
        <property type="entry name" value="TTC7_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19440">
        <property type="entry name" value="TTC7_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tetratricopeptide repeat protein 7 N-terminal" evidence="1">
        <location>
            <begin position="4"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="97" mass="11059" checksum="E7186317E1FD3CC6" modified="2020-12-02" version="1" fragment="single">RTDKAIEQLRYFLRNVEDKSEQDLRKALIQQLIDILMNGVSERSYMMQLTSPASPSKTSFTGSSFQSNTQFSDKGLCFVPRNVTEDVILLLLLKEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVB7</accession>
    <name>A0A7D9LVB7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022811">
        <property type="protein sequence ID" value="CAB4037186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVB7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="130"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="148"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="185"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="39750" checksum="14F3B8D2A87F9CB5" modified="2020-12-02" version="1" fragment="single">KLCLKLEWKVSSQHSRINVSNSSIYNQNSTDFALNSSTNSPSSFSTPYRRQNLSYQADSGYKSANRSDSHKESPIYSRRAYNENIANFPNNSPGTCTKLFKSPRKSVNRQDLYRPQSVDTANIKAKASITPKSENTSENISPKADQVKINNSPQCNNNQHSLESNQQSHASDVKPDLSVIHEKSDEEELYSDSDYEPASDFDPRTNSFGLTPKKLSFSNGYLSDAIDAEFMNLNGTCRLCHDSIPSYLAQLHVIECPKSDLDPVEEFYKTCATDLQTNKEKIQNYVKEHLQYKFNDDQIPNDTFKNCEQFYNFCSIIDELEKSQTRRFFEKCGTPPSRVINILSYEHLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVC9</accession>
    <name>A0A7D9LVC9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like RNase H C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049637</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025005">
        <property type="protein sequence ID" value="CAB4039142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVC9"/>
    <dbReference type="OrthoDB" id="8192384at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048367">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21789">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H C-terminal" evidence="1">
        <location>
            <begin position="108"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="21370" checksum="143410F22A5EE350" modified="2020-12-02" version="1" fragment="single">AYKDHLATLPDEDPSKLDETIALLKHTSLMIELFSDKHAIYAVDDSRLQSLQAALLFFSTWKEETTKGDEFVSQKLWFDIQSMIHGFISLVQTKLRRFPGSIVKPAIINQDCVENHFSQLRGANGQNDNPTYQTTQGTQNSIIFGQTTVSRKGNTGTAKSHSFAGLPKENLFGKKTRLQISKPAMGLLIEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVP9</accession>
    <name>A0A7D9LVP9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052803</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025812">
        <property type="protein sequence ID" value="CAB4039746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVP9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10754" checksum="8B5C1662E46D2B06" modified="2020-12-02" version="1">MVGHIMLKPYVLFLFGSQGDQQPTPRSLMYHDNSDTQDDSGEPVPKRSRCDEEDHGDESSDDDMHDKEMEYIFFGNSADEESDHETDEDKWLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2Z7</accession>
    <name>A0A7D9M2Z7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030449">
        <property type="protein sequence ID" value="CAB4042599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2Z7"/>
    <dbReference type="OrthoDB" id="5988698at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015616">
        <property type="term" value="F:DNA translocase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007131">
        <property type="term" value="P:reciprocal meiotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18793">
        <property type="entry name" value="SF2_C_SNF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049730">
        <property type="entry name" value="SNF2/RAD54-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050496">
        <property type="entry name" value="SNF2_RAD54_helicase_repair"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45629:SF7">
        <property type="entry name" value="DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45629">
        <property type="entry name" value="SNF2/RAD54 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22564" checksum="E27CE09480FF2EEA" modified="2020-12-02" version="1" fragment="single">VFLLSSKAGGVGLNLTGGSTLILYDIDWNPANDIQAMARVWRDGQRKKVRIYRLLTTGTIEEKIYQRQISKQELSGAVADTNVSSKRQDFSREDLKDLFTLHTKTTCLTHELLNCSCTTKTHGEEENARSVTSGVVNLARKCQLGLGGIRHETKEKNLSMAELLQWKHFSRPIEETNLEDDMLRLCADDIDFVFQTETNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQN9</accession>
    <name>A0A6S7FQN9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001797</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000451">
        <property type="protein sequence ID" value="CAB3981995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQN9"/>
    <dbReference type="OrthoDB" id="10023262at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20084" checksum="39F53D2388E3E4ED" modified="2020-12-02" version="1">MAISTGSDESSVSEDELDASEAETEQRSTTPIAKKQKKTSSQEQPFMDSWSQLPQFKKWIQRRVGNDRKAKPYCGLCEQMSTCSKTGIKRHATSKKHQSREKLTTTTRSLSHMVSHISNDDVATAMEVKICAFTAEHNLPLSILDSIVAFLCSLFPNDDPLKKVKLGKQKATNGYSSGARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FY33</accession>
    <name>A0A6S7FY33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000749">
        <property type="protein sequence ID" value="CAB3984518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FY33"/>
    <dbReference type="OrthoDB" id="5954387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="22752" checksum="3E186B0832FD3033" modified="2020-12-02" version="1">MLYVLHEIHNILEKRAQVDTVYLDFAKAFDKVSHDLLLVKLHNFGIRGNLLRWFGDYLSGRLQRVTVLGVTSEPLPVLSGVPQGSILGPLLFLIYVNDLPKATSFDTTVTMFADDTKCHRPLRNLQDTKILQQDLDKITNWCHDWRMDLNQTKCVVMHFSRILRPTITQYTLSETSPSRLLLEKHEIPTQPMAFYSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G482</accession>
    <name>A0A6S7G482_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rab GTPase-binding effector 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018366</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000847">
        <property type="protein sequence ID" value="CAB3985243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G482"/>
    <dbReference type="OrthoDB" id="79940at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006897">
        <property type="term" value="P:endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.730:FF:000005">
        <property type="entry name" value="RABaptiN (Rab effector)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.730">
        <property type="entry name" value="Single helix bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003914">
        <property type="entry name" value="Rabaptin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015390">
        <property type="entry name" value="Rabaptin_Rab5-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000306">
        <property type="entry name" value="Znf_FYVE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017455">
        <property type="entry name" value="Znf_FYVE-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31179:SF7">
        <property type="entry name" value="FYVE-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31179">
        <property type="entry name" value="RAB GTPASE-BINDING EFFECTOR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01363">
        <property type="entry name" value="FYVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09311">
        <property type="entry name" value="Rab5-bind"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00064">
        <property type="entry name" value="FYVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103652">
        <property type="entry name" value="G protein-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50178">
        <property type="entry name" value="ZF_FYVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="450" mass="50697" checksum="F778969B0B9D4A13" modified="2020-12-02" version="1">MDSDSKSLNAFSDGEATTVVNGGTMKKYKSADDLEAGLAPAAKRSLHTRSQELNFANKLESGVVKRGNENIDWKSFEEAAKSSFSDDVDRACAMCSNYEKQLQKLQQRNEALSEETSALSTRLKEERETVTVVKRSCDRLEQSVKVASEDAQAQIKVAMDTQRSFESLLEEITADIDKTKKETSKQVSELMVSRDSYFAQYEQLSENSRALQKLNVQHTEQKQAERAEDQTDVKTKELVALQSEINFMKDRVVAEQIGKESMEELYQAEIETLGLEIRNLKSQLGQQRQLENPPQATESKQVIGILEKQLQQSTKDKGDLETQVKQLRAQLHSLNGQLNNSEAVQRDFVKLSQSLQMKLEEMKESQKETKWEDEDGVSSCRKCEKPLDVPQDKHHCRLCGRIFCDNCSSQTINNPSSPLPLRLCVDCGATEKTSDISGDNMGINRETDDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4Z3</accession>
    <name>A0A6S7G4Z3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082392</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001288">
        <property type="protein sequence ID" value="CAB3988164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4Z3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12262" checksum="D20F04BD92EDCCE1" modified="2020-12-02" version="1" fragment="single">SNSRLSLAAFARLTFESRSYGGDWVSKEDPKSRFGKDSEIAKVLMREILDPPVIQGTNPKKKQNFSDKLMYSVQAQETMKNLDQVNGAVAMTLDKLPCIFTFSPSNSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5P6</accession>
    <name>A0A6S7G5P6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RISC-loading complex subunit TARBP2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A056943</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000643">
        <property type="protein sequence ID" value="CAB3983686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5P6"/>
    <dbReference type="OrthoDB" id="5961559at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016442">
        <property type="term" value="C:RISC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070578">
        <property type="term" value="C:RISC-loading complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003725">
        <property type="term" value="F:double-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035197">
        <property type="term" value="F:siRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070920">
        <property type="term" value="P:regulation of regulatory ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030422">
        <property type="term" value="P:siRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014720">
        <property type="entry name" value="dsRBD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051247">
        <property type="entry name" value="RLC_Component"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46205">
        <property type="entry name" value="LOQUACIOUS, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46205:SF3">
        <property type="entry name" value="LOQUACIOUS, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00035">
        <property type="entry name" value="dsrm"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00358">
        <property type="entry name" value="DSRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54768">
        <property type="entry name" value="dsRNA-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50137">
        <property type="entry name" value="DS_RBD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="91"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="91"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="113"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3983686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="26700" checksum="B4778D2BD01BEAC0" modified="2020-12-02" version="1">MAYKTINRRQACEYLKMLQTGGKTPISLAMELATRLGAVAEFQESKDLKWSMTSFKFCVRLGDIEAIGVGGSKKEAKQNAAKELIKLIENESGTVSPNSPSRSPAYEPRDESYSSFQSPSPSLSSSTSDSPYDRNVVGELQNLAVKNRWELPVYKYEEPTGQAHSKTFTCLVKMMSDLQCKGVASSKKAAKKQAAEKMLDLLAEGGNEYDVVDARVDIILLFQSFCIRMLGFVIQVSIYTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9R9</accession>
    <name>A0A6S7G9R9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060576</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001617">
        <property type="protein sequence ID" value="CAB3990184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9R9"/>
    <dbReference type="OrthoDB" id="407509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="534" mass="62190" checksum="0E513BB4AEFA3DB3" modified="2020-12-02" version="1">MKHLDEIRLILNNNALDILAINESKIDNQISNNEIHIDGFNIIRKDRNRFGGGVVLYVRQNISFSDRIDLIPDELEMVCIELSLPYNKSLLISTWYRPPNSLMNKFDYWASFLAKCDNEDKELILIGDLNCDVSKTIPDPHTCKLQFLCSLYQIDQLIKESTRLTPKSATLIDLILTNRPENISRSGVIHLGISDHSLVYAVRKFTLPNGRQKIRQVRNFKNFAENDFIRDVSQLPWEMVYQFGDPNLCWQVWKSLLLDALNRHAPLRHKRIRNNPVPWINPQIKELMRKRDYHKKKAIKYDSESQWELYKTLRNEVNINMRKAKSKYFCDKIQASSQMGDSKSGWAWINSLLGRKHKNANINELKVNDDIISDDKSITETLNEYFINIGMKMAAESACQSTDALNDQVIYESTVLLPKENFHFADITIDSVSKRLQKLNVSKATGALIQMCDQWLQDMDEGKINGVVFLDICKAFDSVNHEILLEKLKTQFGIHDIELKWFQSYLRNRKQKGQPHVFMPTTLRYLPLRMITIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJ65</accession>
    <name>A0A6S7GJ65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001439">
        <property type="protein sequence ID" value="CAB3989166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJ65"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="595" mass="67773" checksum="6D9CAC3E55212006" modified="2020-12-02" version="1">MTAYIKKEIKARQKAYTTGNMTKYRQLADKIITLIKKAKAEFYSSKVKSKRKHDAAKWHRTISQLAGFEDDNLNNNLISDSTPDTAEILQNIFTKPWSKLPETIIPSLEDVASSLRQENPPTPSIGQVKTALKQLNSKKAPGSDGIPAWVLKRYCEELAPIVHDIICASIKECEYPTAYKHALVIPVPKVNPPRDIENDFRQISILPQMAKVLEKLQLKLNLPSSRINDNQHAFTSKRSTVSALTNISQNWFNVTDNTHSAKNGVHALFIDFRKAFDLVDHGILLRKLAEMNVTKAFWLWTRSFLEDRRQQVKLAGTLSSVKPCPAGVPQGSVMSPALFNIHINDIENLIPDGLSINICKYADDCTQDEVVSQGSSSHMQEALEAVQEWSNRNKMTINSKKTKDMWICFNTAIPAPEPLVTGNEAVERVNSHKLLDVWHQNNLKWNCHVKNIVRKANKRMFSLRECRRANLPPEVGITCYESNIRPVLEYAAPIWGGLPQYLIDEIESIQNRCIKILGTSRCNFETLEQRRAHLTVKEYQRILNDPTNPCNKLIPQPFTHEHDLRTTNNLPYDVSYTKRHRQSFIPRAISLLKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKC6</accession>
    <name>A0A6S7GKC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A046447</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001978">
        <property type="protein sequence ID" value="CAB3992095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKC6"/>
    <dbReference type="OrthoDB" id="6019535at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF269">
        <property type="entry name" value="NUCLEASE HARBI1-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3992095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="446" mass="51320" checksum="87071413CDCAD129" modified="2020-12-02" version="1">MAAINLRRLLAVKNNIIRLLLLERRQKRLNRYKKRFSVRQIYAERKQKGEYHLLVKELMLHDQEYFFNCFRMSPTTFEQLLSWIGPLLQRATTKMREPIGPSERLCVCLRYLVTGDAQVTIAASYRISAAVVGRIINETCELLWNTLIEKGYVKHPSTENEWKVIAEEFETCWNFPHCVGAIDGKHVLMQAPGNSGSAYFNYKKTFSIVLMAVCNAKYQFTLVDIGDIGRQSDGSVYGCSHLGYAIENNLLNIPSESKLTNSEKVLPYVFIGDDAFGLKTHMMKPFPSQNLPLDQRVFNYRLSRARRVIENTFGIAASRFRIFRKPIIANVEKVILVTKAVVALHNFLMTINSSRDNYKYCPRTFMDQDGPSGLRAGEWRKDRNAVLGLQPISRTGSNNYSRDAASVRQGFKDYFVFEGAVEWQWELVSRTVIPYDAFLDRLTQPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKW7</accession>
    <name>A0A6S7GKW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025134</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001642">
        <property type="protein sequence ID" value="CAB3990329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKW7"/>
    <dbReference type="OrthoDB" id="6625098at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="311" mass="35752" checksum="704ADE4E2BC8EA6F" modified="2020-12-02" version="1">MKSALDDFNIAACQIESAVFDGVYFHCSVQKHFNALYGLKDGDILYSYDTLHKSGLVDTHMCKKKEFAWVAEITQICQQVFHLFNWGPNYEKLVKATVLWKLHLRSLVGFSETRFANSRRQVYINIHHEFPAIISCLEEQILDGVKRNSDARARERVHKAKEIKGKILNVYFLFLLSGLADLYGQFGVVVNIAQMVHLLPHERYKLFVEAVDLLEKMKECLNDHTKCDSLAPKGKKERCLWPLNHGDKTSFKKKNEIRDIPIILQHGIQAAGLQIETRRQRIDMAAMDNDADKISDNKLLSLLEEIHTGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNE2</accession>
    <name>A0A6S7GNE2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pry2p</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010493</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002592">
        <property type="protein sequence ID" value="CAB3995064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNE2"/>
    <dbReference type="OrthoDB" id="6507808at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05382">
        <property type="entry name" value="CAP_GAPR1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.33.10:FF:000010">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018244">
        <property type="entry name" value="Allrgn_V5/Tpx1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001283">
        <property type="entry name" value="CRISP-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034113">
        <property type="entry name" value="SCP_GAPR1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002413">
        <property type="entry name" value="V5_allergen-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10334">
        <property type="entry name" value="CYSTEINE-RICH SECRETORY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00838">
        <property type="entry name" value="V5ALLERGEN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00837">
        <property type="entry name" value="V5TPXLIKE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00198">
        <property type="entry name" value="SCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="PR-1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01009">
        <property type="entry name" value="CRISP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="422"/>
            <end position="801"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="131"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="199"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="234"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="469"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="507"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="545"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="583"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="634"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="659"/>
            <end position="784"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="816" mass="83155" checksum="86586AEFB69613A5" modified="2020-12-02" version="1">MGIPLVLDNKIHNTRSGGFERSEEEIEAQLKNSINALNSYRQAKLEEVFKVRFDAKNANILKACEAFDAASENFLDFEKLLYMLVTCWWLHLQPIAACSESKPPTQEGSKQTGTKPEGAGTNVITPNESAGTDTTGTKPGDTGTDVITPTNTDTTGNLPESKPPTQEGSEQTGTKPEESTGITPEGAGTNVITPNESAGTDTTTTTGTKPADTGTDIITPTDTDTTSNLPGEPTGTTSTTPDSTGNTATSTTDTGDAYQNECVCAHNQKRKAHGTTPLIWSAEIAASAQEFANELAAADSVNIKHGKSSYGENLYVAYGTAPLPKDRKGTCVKAVDEWYDEIAEYDFNNPGFNSKTGHFTQVVWKTTAQFGVGEALTSTNKRFVVARYKPAGNMMGEFEQNVPRPLTGSPAPASTECINAAGTTPTDTGPGTGGLNPTPKVPEDTDILPSPAATPNPLTTGETGGVTLNPLTGATLSPPTPSGNVGETPNTLSGGETGPGTPKPTLNPLTGATLSPTAPSGNIGVTPNTLSGGLTEPGTPKPTLNPLTGATLSPPTPSGNVGETPNTLSGGLTEPGTPKPTLNPLTGATLSPPTPSGNLGVTPNTLSGGLTESGTSEPTLNPLKGATLSPPTPSGNVGMTPNTLSGGLTEPVTPKPTLNPLTGATLSPPTSSGNLGVTPNTLSGGLTESPKPTLNPLTGATLSPPTPSGNVGVTPNTLSGGLTESPKPTLNPLTGATLSPPTPSGNVGVTPNTLSGGLTESPKPTLNPLTGATLSPPTSENVGVTPNPLSPSVTPNPISPSVMPSGRRPLLLYYYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GS95</accession>
    <name>A0A6S7GS95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Probable calcium-binding CML41</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082416</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002477">
        <property type="protein sequence ID" value="CAB3994495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GS95"/>
    <dbReference type="OrthoDB" id="26525at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="33220" checksum="B4544D78572C9173" modified="2020-12-02" version="1">MASSLGQLLTEEDLDYARRLVKCLKSSSDYDDVMIRNILDNNWETEPQMVSNLLHFPSVIPKDLRLPSLLRGLQETKRLYYILAASNGLCSLDLTKENDVSDVKEKLKEATLKPQGDIAIHAFMALGKLLHHPEDTEFVLRFLHCDKSTLHYNALTWLLANVKDKNEVKKVLENKAVPEDIREEGLERLESDLIEVDLNQNASFTYTPNLADFEAMRRKEQTLSEIFTELDTDQDGKIGAEELLSFCEDIGTVMTLEKAQKDIKHFDGDNDGKIVKDEWIELMFPQFNVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZK9</accession>
    <name>A0A6S7GZK9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">B9 domain-containing protein 2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A013066</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Cilium basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the B9D family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002712">
        <property type="protein sequence ID" value="CAB3995702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZK9"/>
    <dbReference type="OrthoDB" id="184109at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036038">
        <property type="term" value="C:MKS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010796">
        <property type="entry name" value="C2_B9-type_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12968">
        <property type="entry name" value="B9 DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12968:SF2">
        <property type="entry name" value="B9 DOMAIN-CONTAINING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07162">
        <property type="entry name" value="B9-C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51381">
        <property type="entry name" value="C2_B9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0966">Cell projection</keyword>
    <keyword evidence="3" id="KW-0970">Cilium biogenesis/degradation</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00038411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00039272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3995702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19751" checksum="4057355233C0A2CC" modified="2020-12-02" version="1">MAEVHIIGELIGASGFPSHNLYCKWSVHSEGSWRLLAGAKEGQTQVDNPQNEECAKWSHPIDLHFATNGLKGWPKFHFQVWYQDSFGRNQIYGYGFCHVPTSPGTHDIDCVTWRPSGSWKEQVRSYFLGGGAQLKTSDVIYTGADRYRLRTVAMGTVHLQLGIITRNFDKFGIEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H091</accession>
    <name>A0A6S7H091_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Histone-lysine N-methyltransferase SETD1B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A066978</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003156">
        <property type="protein sequence ID" value="CAB3997658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="308383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048188">
        <property type="term" value="C:Set1C/COMPASS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042800">
        <property type="term" value="F:histone H3K4 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024657">
        <property type="entry name" value="COMPASS_Set1_N-SET"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044570">
        <property type="entry name" value="Set1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45814">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE SETD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45814:SF2">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE SETD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11764">
        <property type="entry name" value="N-SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01291">
        <property type="entry name" value="N-SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="229"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="796"/>
            <end position="1056"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1087"/>
            <end position="1130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="240"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="304"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="333"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="441"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="544"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="570"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="805"/>
            <end position="853"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="890"/>
            <end position="915"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="952"/>
            <end position="966"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="967"/>
            <end position="980"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="981"/>
            <end position="995"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="1023"/>
            <end position="1032"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1038"/>
            <end position="1052"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1100"/>
            <end position="1112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3997658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1303" mass="144257" checksum="7C6069F446BD5680" modified="2020-12-02" version="1" fragment="single">MSHDPSAYNRHVIGDIARAHGGHEHTFGRSSIPNGEHLSRPNEVERKRNYKLIIDPMLKGRGHQKIYRFEGDFDGQTPIIPKDPRSRRTRLWSTRTKADLPVPKFKIDKFYVGIPPQRDVILNGLNDNVDRKFLQEMCEKFGNIEGVKIFYDPVTKRHTGKARVGFTTSVSAKLALAKLDGTSIMGCIVHADFEHKVEVKHIQKPHAPPRRGSDPVHKTPPTIERIASHHVIPTPPPSNSSPANSTPSTPGSLGLVDPRRRNSSASSASCDKHRSKSPLPWPTPLSQNKVPVFEPISPPSEKLPLPPPPPPDGPPPPLPEKCRTPSPIPNTTKQDRYQSKDSKSLSKGSRDLYNKSSRHDDESDWRRRDRNLSRDHFEHSSYRRSSDDRGRDSRDSRYSSHRDYYSRDKDRDSYQRSDPRRYRDSESRRSRDSDDSYGSEKSFKSLKESSKSRHDYESKEFDRGRSPRVLEKDKRDTKKSEKAVGKSEENSQQKDKLNSSDKKLNNGKSNSGHRSPGVDNLSLKSLSPRTEKPSGLVTDVGKSLDNSLQDTTNNYLPMVEDISPVSSPTQPKPMSYPPPNQPEVYPLPNQPEVTSTTVQIEASIDNKVQAISSEDNDDAMSLSSISSNEETLEVTKPVPPVPPPIPTFTPTYAPPVLPPPFMPPYNPSIPPPSYPAIPIVPHRIPIPPLSMATLPPPHPLVPSAFHTTYPPQFVSTLNGVPTPPVYQTFPTGCMPSPHEQRPPVRKNWKIRISEEVLKRVTEELALILKKDVNKRLVENSAFKALDGWWDNAQKSKLKKSTQSETPSAATNQTTTTAQTPDMTSPLTASLTSPLTSSLTSPLTSSFSTTMSHGGMMGMGLRASLPKMPSFRKRRPPSTSGSDLYAKRKRTELSPERGQKRTTIDSDSDVSGKLRGDSPLPSKRLRNDMGDDVSVGSPWQQDDDVTDEPPATSVRTEVDSTLYTNIYSSLSESESSLSGEESASEESGEDDSDWEEGSQGSQGTSDSEEETGKEEDIAERKVPQTPPGTPPESPSSTPAISRTPSNASITPTASPVDVTTIDDEVWGLEQSSNGLNLISQDKEGTFWLPKDIAPDSKSADLSESTSGQETVNKQEGMGNCLSEGGDEGLSEASSIVAPHKHIPPKMQSTSEDSTVENFKSPEVKQGGEVLPVPKEILAEPELPPEFALRPYWQDDRLVYDFLVSGLDYEDACYLNIGFENLLQVGSDSVAKAHWSFHPTTSAGVPTKGRKQKQENCGVRLHDSGCARCEGYYELSMKEKAKYLEAARRQVNMSEAVVNKKHNEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6X9</accession>
    <name>A0A6S7H6X9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039791</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003846">
        <property type="protein sequence ID" value="CAB4000474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6X9"/>
    <dbReference type="OrthoDB" id="10065482at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="196"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="79"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="210"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="799" mass="88605" checksum="9860BC0966D266B6" modified="2020-12-02" version="1">MASFQAEFSDHLDCEEELEDMLTSTTNEVQIQKRVFNIEDEEATVIPKKIPAKNSSLSRSRNILSFFQGTSGVTSSANSETPTSELSETESSAVIEHEVAVSSKHSTETGSPRSKAAGTAKLPKRDYSKYKHVCLLCAKNDTATARNSAVLTRGGDFQVERHRKSHHSSISLKDMKSHVVPINHISVPRNVRELAVPKPSSKTKDKTGATHDNGTIQKNKISSAMPSVSNDALPQTESNKSLASEGNLNENINNDDITITAGENQIQKDLSDFVTVTSQTFEEKMVHMIEKLSKKVDNLKQVTPPMGPRNTGTTETVSGLLMDKFNENMKEPYLKMKEWKKVGKIVELVNAIDCLELYPLSSSDQEEFEDGSGAILRCETCFFLNKDKAVKLTPVRAAKKLAADCSSICTGKYLSPDRMESLMKGEGNYWRKLKSSILQHMICANDGQTHFKALSAVNEERNLKQKHYDAAKTLVKSILTAVKAKSAAIHYEQQVTFAYSVGAQIGQCGHSRKVVPDLVKCLLQVINEKTKEELLKCLPSTGFPPHFYMAVDKATVNKRTNEAVICPTIDGKKVPIVVAAPEVYKPTTDGGVQGGKADESALRALKQIETKFGSTTLDYLVGISADGVYQANGFQSTINDNSENLFLKQVGWDASHWMNLAVTDVRDGKIGSSKEFFSKFIERTNRFSEVLNRGKGRSTLEAAAKELKVAPTLQLPTCRQDLQDFVVDLLLMHDVFQPVAKVMTLLQSISLPPWKTYPYAQKLAKWLLDAYMECHEFGNMEYFPNMNENIEVLYVIPKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HF13</accession>
    <name>A0A6S7HF13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004158">
        <property type="protein sequence ID" value="CAB4001710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HF13"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="217"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="430"/>
            <end position="1066"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="220"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="231"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="262"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="340"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="363"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="380"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="391"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="464"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="497"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="525"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="560"/>
            <end position="641"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="644"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="654"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="808"/>
            <end position="819"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="820"/>
            <end position="833"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="854"/>
            <end position="869"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="928"/>
            <end position="942"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="944"/>
            <end position="959"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="974"/>
            <end position="989"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1006"/>
            <end position="1046"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1066" mass="123493" checksum="F471483BF934BCDD" modified="2020-12-02" version="1">MLRLLRIDDENYWEESPIGLLYSPLSERNVGKSMTIDVLAKAQGIESCKHPTMLAGGDQNQTGTSVADGRVLRFTYKKGNFTREDKEKVNDGVKAIAAQHTFYSTLGLPPKTSQLLNVIIEQELSSQGKELNVMEELERNILAKINKQGENKNDGRPRGASRPRDVNKIQKAKPQDKTENEGRQQNMNKRHPVELDVQSTSGFLFDQTPLGVDIAETSKARSGNASMVNIKTEDGNRRQPDSDRRQRDDDRRQQNDSQQSNTEKHHRDGDRRNVEREKREPVDDKQQQTADRRRREHPESRFYDSANERNTKERDTGDDRPYKGSVRLPFGPQTSGEPLGRAEKFRDKTKNRGGFGVPPQPKEQPKKNENEEKSKDESNSAKTKPISSITELKRSDESVVDSFKGKASESAFVPHRTEWDVADSRDTIAKKVKTEDTFAPTQKTAAEVKTEKPSSTESFRGYKKPTEKEVVEKPTDGKKQQNNKEDKVPTTAPTKNDQYESKTGERRERTVPNKEREQQNFSKSDSGETKVEKYESKTGERRERTVPNKEREQQNFSKSESGDTKVEKYESKTGERRERLVSNKERERQNFSKSDLGDTKVEKRRETEIYGDGRHRQDDRQPRPRDETRREQPKRNDERKAPVKSSTENWDSEINSRAENRDATRQSYRTQDHTDRRNNSYSRDRKDQRDQRDQDKPDQRNRNERERTDRRDRTDQRERMDRRDRTEQREGNDRRENKDRRDRTEQSERQDRRDRTGQRERIDRRDRTEQRDRTDRRDEIKPVSNEKLESNVKKPRKPGVKGEEQNKDIQQNESLPQKQDANRESERTEKQEEYLSSMKKQSDRFTVGTLSPAGDRRRYNETRRGDASSRRGSHGGTRGMRGRGRVISSGKPIGKASAASKNDNENDSEDFHSVHSSADSDESDSEEVFDKQDDGRRDDKRPTRSYYSSSRSRGSYSSRGRGRGSSQITRSPRKQSEKPPRFQRQEARSASRGRGKSNRGGFSSKDNWDENISKNRDSRNSDEGPLPEKRPPDTSYSNEKDSDGSYRGRKAVRGGHSGNKNFFSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HH01</accession>
    <name>A0A6S7HH01_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081311</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005140">
        <property type="protein sequence ID" value="CAB4005245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HH01"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="540" mass="61121" checksum="0D6C87DD710A8C9C" modified="2020-12-02" version="1">MATGKSPGLDGLPDEFYQRFCSLLGTYFVDVINFAYNHGQFFPSQRSGVITLIHKRGDRLDMKNWPPITLLCADYKIVAKAIANRLLGVIAKVTHSDQTCGVADRNSLESVRLLKDVVFHANQNRKAAAIISLDQENAYDRVEWGYLSRVLQTMNFGQSFQKWVLLLYSNICSYILINGETTEFFSVSPGVRQGYPLSPLLYVLVAETLASAIRADRFIDSYILPNGRSVKLCQYADDTSAIVTTDLALNALFRHFHLFTRYEKASGAKLNVTKCHGLLIDTWQSRSNLPIALNWSNVEIIVLGSRISNDNEEQWESRIKASKTTLSAWNRKALSFRGRALIANMLGLITLWYLCSFSVIPEAIIKAVNGEIFPFVWRKKREWLARSSVTQRPNQGGLGVVDVHRKMLSLHVLWVKRLIFRSNLPWTSFFSQYLIRAFPGRSVHQILILAVPPKYSMDAFPPLYRSVMTAWFALERRFVDNEYVICGPRWSCLNSSRQVSSMTPCLTNIVSNIDASKSMRIGVFQSIGQIFGCPFFSGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMC1</accession>
    <name>A0A6S7HMC1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase ASNA1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082691</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arsA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002720">
        <property type="protein sequence ID" value="CAB3995737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMC1"/>
    <dbReference type="OrthoDB" id="1770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043529">
        <property type="term" value="C:GET complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071816">
        <property type="term" value="P:tail-anchored membrane protein insertion into ER membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02035">
        <property type="entry name" value="ArsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025723">
        <property type="entry name" value="ArsA/GET3_ATPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016300">
        <property type="entry name" value="ATPase_ArsA/GET3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00345">
        <property type="entry name" value="GET3_arsA_TRC40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803">
        <property type="entry name" value="ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803:SF3">
        <property type="entry name" value="ATPASE GET3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02374">
        <property type="entry name" value="ArsA_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArsA/GET3 Anion-transporting ATPase-like" evidence="2">
        <location>
            <begin position="1"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3995737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28060" checksum="86C13749A0983063" modified="2020-12-02" version="1">MEIDPNVGFSQLPDDFVDEPDAVSLGKRLAQDVLGAFPGIDEAMSFAEVMRLVKHMDFSVVVFDTAPTGHTLRLLSFPSLIENSLGKLLQIKNQFIPIINQFSGLLGMDDADPSMVTNKLEESMPVIKEVSAKLKDAEHTTFVCVCISEFLSLYETERLVQELSKSDIDTHNIIVNQLIYPDTNKKGTCSLCAARMKIQAKYLEQIDDLYEDFHVTKLPLLPHEVRGCDKINEFSQYLREPYVPEDNSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTN7</accession>
    <name>A0A6S7HTN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042101</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006266">
        <property type="protein sequence ID" value="CAB4008904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTN7"/>
    <dbReference type="OrthoDB" id="8007085at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="16836" checksum="0476A397CDD20EC4" modified="2020-12-02" version="1">MEESRNLVMCGHCDQLVSRSTRNRHENKRNHPCALRKSYQNIVGESSSDCTDSDSEIQHNGADSQYSNSNQNTASEPQGGNDDLMESNGASSVGENTLNDPNDCDMYPSEASTLSDSSTDEESAGDEVWNDLLIDDLIKDIENPPPLPIKEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWM7</accession>
    <name>A0A6S7HWM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006599">
        <property type="protein sequence ID" value="CAB4009866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWM7"/>
    <dbReference type="OrthoDB" id="5989324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="8135" checksum="9F1A6B5891DB3F1C" modified="2020-12-02" version="1" fragment="single">AGECLIDLEDAVNSDLEMLRKWLMANKLSLNVAKTEFQIIGTKQMLKKASVQQLKIHIQNIPIKQVFQCKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZF5</accession>
    <name>A0A6S7HZF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049968</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006684">
        <property type="protein sequence ID" value="CAB4010127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZF5"/>
    <dbReference type="OrthoDB" id="5965426at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="25141" checksum="95B412DC1C65F47B" modified="2020-12-02" version="1">MFCEKKLKSCRDYKDGTRVPGNYTVVDKNGNPYQVFCDFNKNYGANTWTLIQSYSLENKNGFASPFTMDNPRNEDNFTWIDYRLSVERMTYIHEQSVKWRITCNYGTEGSLYNDYVRALIADVPLFTLFTNQGKCVPVQRISIRGKTCINCKAYMVQSYELPLHFRAKQSNQCNFKVPQTQSCPPESEDNFGNYNCINPKHKCSSSSSATTQTWLGGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I0Z7</accession>
    <name>A0A6S7I0Z7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110062804</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045094</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006443">
        <property type="protein sequence ID" value="CAB4009410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I0Z7"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="472" mass="54164" checksum="79591EB2128681A8" modified="2020-12-02" version="1">MADNVEGVEELRRLTVERIDHVYSTLMNNAVDINDVLEDVEQIFEALYVIDSVVGLSEDIFRDILSAKGILENISRSRTTRIFSGAPGRPSYDVAQDQLQALIDVGFNVGQIAELLQVSKRTIERRLAEYGISTRSYCDIANDELDAIVQEIKLFHPNVGSKNLAGYLAARNIRIPRQRIRDSLQRVDPLGVAARKCKAIHRRVYSVSRPLALWHFDGNHKLIRWRFVVHGCVDGFSRIPVFLFCHTNNRASTVLQSFLSAVSQWGLPSRVRSDMGGENIDVVEYMISRRGTGRGSALVGRSVHNQRIERLWRDVYRDVLDTFYGIFMSMEDIRILDPINEIDLWCLHYCFCNVINRKLKSWVNAWIRHPLSSEHNQTPLQLWVRGQFDNAERLNVDQVMVYDNYGIDWDGPASTDADTEDDVHVSETNCPLSEDQLNQLNAMFEQSSPENPSPWDCVRIYQLVKNFTLQYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I7X4</accession>
    <name>A0A6S7I7X4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A049718</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mab-21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007754">
        <property type="protein sequence ID" value="CAB4013099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I7X4"/>
    <dbReference type="OrthoDB" id="5952992at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1410.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046903">
        <property type="entry name" value="Mab-21-like_nuc_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046906">
        <property type="entry name" value="Mab-21_HhH/H2TH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024810">
        <property type="entry name" value="MAB21L/cGLR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656">
        <property type="entry name" value="CELL FATE DETERMINING PROTEIN MAB21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656:SF42">
        <property type="entry name" value="CYCLIC GMP-AMP SYNTHASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03281">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20266">
        <property type="entry name" value="Mab-21_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01265">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Mab-21-like nucleotidyltransferase" evidence="9">
        <location>
            <begin position="100"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="Mab-21-like HhH/H2TH-like" evidence="10">
        <location>
            <begin position="325"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF20266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4013099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="444" mass="52007" checksum="BD6C694136C42F26" modified="2020-12-02" version="1">MIQASSDDYWTFKDKLLKMWVPAVGVQTAAGLCTRNFEKFFAEEISCVMPDFLDREMIKEIFELYVFKQDLESSFDTQPPFQLNEAILTGSLTEGLFLYTAEPPDVDFMCELKNIMFSKDDQESGCLLLRDDTPFVYAFITNKETQHLWREFFDDVNKEEGVHRLSSRKLKEKLQENYQKSGRTIFPFYDNKQLEEVAEGAALTVFNSKTASSVIHYPIVLMKTFLFEPLAKTLEFLHNDWDPDPFFSRKLISFDIVLSIFCEGWPFCAKEWIIRERLWPDIHSVEKIKQGGFHIIPKSSPDGDFRLSFSCAETTLIKTLTPLQLKVMRAFKAVVKYYQNTWSENLKEIISSYHLKTIAFWHFEKSSQESWTEETLVHHLVTLLEELAEALRMQYLPMYFMPKFNLLQDVDDPELMLDLMERISQLSHNFTAMSEAVDNYTTRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9Q0</accession>
    <name>A0A6S7I9Q0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007620">
        <property type="protein sequence ID" value="CAB4012750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9Q0"/>
    <dbReference type="OrthoDB" id="6065219at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="37039" checksum="C9BB30EE5CED2D8A" modified="2020-12-02" version="1" fragment="single">RADVTKCKIISGLAITKLSILVKYETYQTLDHARALRPIQFDSNIASKSIKHLHIMQILKIRVTNFSYINSSFSNWNATMKLITFKDASVFIYKHNEPEKSLSSKFFNKFPFKRTGFKEFYIFFIDLAKKLKILPVTCTALRKIDRSLPSAVYKIKPINADAPFRVYCDMISKNGIGVTDIGHDSESRTFVKDYSDANRKITYILSMKQIVAVIKMSVHCEQFIKYECHHSVFNIGSRAWWKSRQGSKMNYWGGAAVNSGKCACGMTNSCDGGGKCNCNKNDAKWREDGGLLTDKNTLPVIELQFHDLGGSSEFGYYTLGKLRCWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IF74</accession>
    <name>A0A6S7IF74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase PIF1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008996">
        <property type="protein sequence ID" value="CAB4016157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IF74"/>
    <dbReference type="OrthoDB" id="416437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF3">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="468" mass="52595" checksum="22AB76319369A18B" modified="2020-12-02" version="1">MPYGVKVLFDDPRVGKLFKDSTTQAILIKPVTVDFFGKEGIQIQRTQIPLMPSWAVTIHKSQGMTVSNVVINLGPKCNKPGQAYVALSRVQSLRGLALTEFTEKSIKVSRKMSFQTVSDLKNLPSSDEKAIITKPIKVKVIVDPVYHHDDNPTTPNVIVMSIVADDSGTIKCHISNEKDIVKKFFQKNASIVISKCTITTCDEEPQLNINMQSSIFLIPTFNLKQNLPLPLLPSFPTIKLTPIAEALKLPRKRQISIEGKITKIEPPIKVKNNSIDLKKVFLKDTTGMMQVSLWKDKASLPLSQGDVISFTGLQTSMFQNRPMASSTTHTQVKVSENQDLILIDTDDEYDQLYKDGTIIGIQNVICYNSCSNKQCRNKKLDSTNQCPRCSKIYPDDKLQKAYVSNLCLQTEEDLKSVTVFQKVFIQLFTIDENENRQAEDLTAALLQKLPISLKYKENDDIIQEIILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ILP6</accession>
    <name>A0A6S7ILP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010088">
        <property type="protein sequence ID" value="CAB4018616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ILP6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12068" checksum="EC82DA38EE23461E" modified="2020-12-02" version="1" fragment="single">RFPEAYGVAERSDHENNNGQILRSATCAGMLKMMIEKLPNAKITKRQDYQTQDYQTPPPGDLPPKDQRGVRLPEEPDQILPVQEQPARRELPAREHRVPHCLQET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMV1</accession>
    <name>A0A6S7IMV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A086844</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Microtubule organizing center</location>
            <location evidence="1">Centrosome</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010266">
        <property type="protein sequence ID" value="CAB4019026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMV1"/>
    <dbReference type="OrthoDB" id="311279at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005814">
        <property type="term" value="C:centriole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005813">
        <property type="term" value="C:centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097539">
        <property type="term" value="C:ciliary transition fiber"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051660">
        <property type="term" value="P:establishment of centrosome localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052116">
        <property type="entry name" value="Centro_Cilium_Assembly"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23170:SF2">
        <property type="entry name" value="CENTROSOMAL PROTEIN OF 83 KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23170">
        <property type="entry name" value="NY-REN-58 ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="217"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="283"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="23"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="94"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="221"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="288"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4019026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="467" mass="54607" checksum="B15A557C982905C9" modified="2020-12-02" version="1" fragment="single">LREKRETAGLQSDHVSKLQARQLAESTAHCKELEADIETLKGQCQRLQAEKENNDKQQDQYISQVYVLENECNALKSKLLDANHEHKVEITNVKMELTKNRGDLERERDSLKLECDSLRNKITVLDNTVEHLNVVIGEKEQEVCKREQAAKEKEWEKLNQMEQNNLQLEATIAELERTKGDARISHHEEVKKLEEELRSVNEIKEILEQELSAVRNQLKQTTDRSDELGKERTKTQELKEKQQKLQTQLQSVLNSEQQLMAANERLKNTVDLLNDEIGIARSDLQHAQGEHNKEKEETRKSLNLEKESLENKSNEKQQKLLDEVKAAKKKIDALIKKKEKYKHDMADMKESIKLLKAKEEMARAETEAVRKNMEVENQRLRKQFDRLKKRQVDFRNMLNNTDTVFPQAITSTPLKFPPHMFDQEQQRRDLSSVRDRLDDLADSQQRQAENLLGMSELTTRTNLYEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMY3</accession>
    <name>A0A6S7IMY3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035157</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009830">
        <property type="protein sequence ID" value="CAB4018060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMY3"/>
    <dbReference type="OrthoDB" id="8911154at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="25613" checksum="F703B471C25AD967" modified="2020-12-02" version="1">MKQNIDQHLTKSEKELVNKIRNNIKGNQDKILDYGYTGVIDDGHVDEIVRSIVVSLVNKRVLYLKEFMQGLALYGIDELLKKAPGLCKYYFVQGLIQDNIDANYLFSCLQPEYSEPGSSRRTLEEKVVDNFQDFLNSIEDTKVTGYSAPVAWNYKDEDEEKQKVPDDMIQEEKFETAEVNVPGMMMWLTGQKHIPLNGKKLSITIFFIMTVNLGIQSIPFVFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INF0</accession>
    <name>A0A6S7INF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080169</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005769">
        <property type="protein sequence ID" value="CAB4007341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INF0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11701" checksum="64750BBA8688313B" modified="2020-12-02" version="1">MSGTIRAGHLEIVVENVNVVKVYGDENLTTLLSQKFEEHFGNNIVVSTGRLILGPLATETNVTSGKAYLGAPLKMAVIRILENESFKVISMALNNEGCEKVMMYKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IS29</accession>
    <name>A0A6S7IS29_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045971</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006121">
        <property type="protein sequence ID" value="CAB4008432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IS29"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="13939" checksum="DA17DD4143362FE8" modified="2020-12-02" version="1">MAVEIMFTFSNDPNDPQKANDRNDPQKANDPNDPQKANDPNDPQKANDPNDLQKANDPNDLQKANDLNDPQKANDPNDPQKANDPNDPQKANDPNDPQKANDPNDLQKGNDPNAPAKKPDDPKQIGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXZ6</accession>
    <name>A0A6S7IXZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ELKS Rab6-interacting CAST family member 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A049854</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Presynapse</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011814">
        <property type="protein sequence ID" value="CAB4022120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXZ6"/>
    <dbReference type="OrthoDB" id="2019763at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048788">
        <property type="term" value="C:cytoskeleton of presynaptic active zone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098882">
        <property type="term" value="F:structural constituent of presynaptic active zone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007274">
        <property type="term" value="P:neuromuscular synaptic transmission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048167">
        <property type="term" value="P:regulation of synaptic plasticity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019323">
        <property type="entry name" value="ELKS/CAST"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18861:SF0">
        <property type="entry name" value="BRUCHPILOT, ISOFORM J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18861">
        <property type="entry name" value="ELKS/RAB6-INTERACTING/CAST PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10174">
        <property type="entry name" value="Cast"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5 9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0770">Synapse</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="326"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="20"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="161"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="329"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="346"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00034106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4022120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="369" mass="42713" checksum="6CABFA8EE3E7AA3A" modified="2020-12-02" version="1">MEAEKETSQMQNLLDALSKVTHLEEHIARRDQTIQDLENEIELNKSQAVLSNELQDILSMKDEEMNKISKKCKMLEEELGEARKFSDQNASNEERKYKEELQKKEEVFDSHSKFMKSKLDSSKGELAKKDTELVAVKTKLETFEKHQSDLQEHITVLHSSNKSKENHIQNLQQELRSVRERLEDKEKLLDTKEKEVVSLTSLQSQNSGEVDVLNTLIQSKEKQIASLKEKCLALESEVSEKDDLLSHSKNRAANVEAEHSEISSTVKTLQKSIKDKELRIANLEQKNENLLEDHEEESRNMQQQIKSLQTKNLEKEVELQDKIEELAKQRNQSAQEENRASSLQKSIRDRESDLDDLKMDVKRVSYKAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1M7</accession>
    <name>A0A6S7J1M7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013829">
        <property type="protein sequence ID" value="CAB4025795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1M7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="27000" checksum="16548AA437BB333A" modified="2020-12-02" version="1">MSTNKLSYDCKTYRWSWSLLELKSFVEQHLKLHGSWTSPGGEAKVFRSEQSDFLIKWYGVSSKKIVIQVDNEEHYLELLFQSLINTYEIDENNEMQSEVIALDDSCTGDALVISNTADKATQSVHDVKSQDNDLKSNELAVKSTAKVCANKNERLNGFKVCCYNCTCGSNVTKAELEGIKLDMAVLESRLLVSASPLEEIKLEIKTLKTKENDMEVVIRRQNELICKINDENMVLKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J241</accession>
    <name>A0A6S7J241_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088600</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012333">
        <property type="protein sequence ID" value="CAB4023129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J241"/>
    <dbReference type="OrthoDB" id="26719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF31">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 6-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="373" mass="42955" checksum="51EA64C899F9546D" modified="2020-12-02" version="1" fragment="single">LQQLKKQIQSQEAEIQNQKKKIQAQENKAIIQEKKIQSQAKKIKDQENKAIIQEKKIQSQATKIKDQENKTNIQEKKIQSQEKRIQEQENKTIIQEKKIEGQENKTNIQENKIQSQEKRIQEQENKTIIQEKKIESQENKTNIQEKEIQNHENMTRRLEKQNQDIVKRINRLHPLPSCSALVIKHSSTRSGMYYINPQGLSSSPLVQVYCDMTSKNGVGVTVIGYDSESRTLVNGYESAGSYKRKIKYDISMEQIVAIMNQSKNCEQFIKYECYDSVMTWKSNTIAWWVSRQGWKMNYWGGAAVNSGKCACGMTNSCAGGGTCNCDKNDFAWREDSGYLTDKNTLPVTELRFGDTGHPIEKGYYTLGSLRCWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEJ9</accession>
    <name>A0A6S7JEJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020166</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006765">
        <property type="protein sequence ID" value="CAB4010378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEJ9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="77" mass="8185" checksum="877D24F4D992C739" modified="2020-12-02" version="1" fragment="single">AKDFVEIDDILDTVTGSDSQCGCRGDYGDDSGISGGEDGDDNGIVSGDGNDDNDDDNDDNVPLACRKKSESKYKFEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JG08</accession>
    <name>A0A6S7JG08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016361">
        <property type="protein sequence ID" value="CAB4029718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JG08"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="14874" checksum="2A8826B000C3DE2B" modified="2020-12-02" version="1" fragment="single">PVGEHLSPTNTHVTLPSGISEGPVGEHLSPTNTHVTLPSGISEGPVGEHLSPTNTHVTLPSGISEGPVGEQPSPSNTHVTLASGISEGNNNYQANLPPKREGIQDDFKALLPTIKVKLAEMGIKITKHPGFTKSVLDAIADTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGC5</accession>
    <name>A0A6S7JGC5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032996</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017555">
        <property type="protein sequence ID" value="CAB4031346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGC5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="12408" checksum="C8DF7FC10DED2708" modified="2020-12-02" version="1" fragment="single">MEGKSNAMYDQMNTAATAPPYPTYGTDTNSAYPPVSTGYPPVASAYPPLESAYPPTTNAYPPPMNAYPPPMAAPPPYSASVPYETQTTNTTIVAITTDSYQPYTPEVGFDSKTVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHW8</accession>
    <name>A0A6S7JHW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083726</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015566">
        <property type="protein sequence ID" value="CAB4028570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHW8"/>
    <dbReference type="OrthoDB" id="6007857at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="14918" checksum="C0D58C63C16050DD" modified="2020-12-02" version="1">MAALSSSTSCTFPGGGEFSFNIATDNVEVAQDVLKTVQVVGKAVVTLGALYFGYKLLKPVIESAVTRGLGGERDDQDVRGIRPGSLRVQLYCSTDQRFLEVLADYKSGRMKERLHKEFLQVGIKVKGLKMEIENMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JL67</accession>
    <name>A0A6S7JL67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017216">
        <property type="protein sequence ID" value="CAB4030894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JL67"/>
    <dbReference type="OrthoDB" id="6768507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="22920" checksum="12D523770E9080A2" modified="2020-12-02" version="1" fragment="single">RLTKVWDGDWAAYKSLKNHYNRLIKSTMRQHYQEKIHNNSDILPIFNVQLTLYRTLKRSNTILPIWLSANKLTLNKTKTEYMIIGTTYGVSQSDPKSLDEAVKLALRLESIHLAEMKNNNTAKINMAGDERDTAGFDMAGARDKRDTAGLNMAGAKEEDQSTPRWAKKYFDQQAELMDKMSKFLEQTKYGLIPKTSKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JNK2</accession>
    <name>A0A6S7JNK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009876">
        <property type="protein sequence ID" value="CAB4018142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JNK2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17124" checksum="AA0A05DC13C1F01D" modified="2020-12-02" version="1">MSSSGCESEPSLDSKSSSSSNESIHLESGDEEVGVVNSVINPYGNEPSANPADDGNSSNDGEEDEDGINPRTLEARLEGEITLDHWEVGPTLHQLVFDASIERISCVTLHEDYIAMTHPTVPLLKDSRSYKRRTGQHENEKVLRTKSSHHIYIIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQQ8</accession>
    <name>A0A6S7JQQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010191">
        <property type="protein sequence ID" value="CAB4018842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQQ8"/>
    <dbReference type="OrthoDB" id="6099737at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="33633" checksum="FD96D45810167F83" modified="2020-12-02" version="1">MIITGDISIDFLKPNSIPKQWVDIMESYNLTQLIKVPTRVTNSSKTCIDHIYVTNPEDVRATKVATISISDHFPVCYSRSHNSATRTHKHSSIKYRSYKNFNQSAFLEDLTLVPWNVCKSFDDPNDALDCWEKLFLEVVEKHAPLKERRVKKPKQPEWLTEEMLKAMNARDKFAQLNDDRNRKLWRNKANNLVRNGKTTYYKQLIESNIGNSKKLWNLIRDLAPEESKTTPTTLKDGDVTLSNPQDIRDSFNEFFAQIENAIAASLPNSRNNTSDVLADFINKHLATKTTNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSF6</accession>
    <name>A0A6S7JSF6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018176">
        <property type="protein sequence ID" value="CAB4032160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSF6"/>
    <dbReference type="OrthoDB" id="6136201at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009816">
        <property type="entry name" value="SPATS2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15623:SF11">
        <property type="entry name" value="SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15623">
        <property type="entry name" value="SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07139">
        <property type="entry name" value="SPATS2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="256"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="79"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="285"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="306"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="348"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="370"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="467"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="505"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="526"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="558"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="579"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="579" mass="63280" checksum="34C1FD586EED3549" modified="2020-12-02" version="1" fragment="single">PRPEKQAEAGQKEVGENIVNGSVPKVLPIDEPTTTSKDSPKSLENLKPVSNDIPKPSETTPTPASPPPPSPLPPPSPLLSPTGSTASSLQDSQTSNKSRAGSSTNEKHPRMRTTSGSGSEVIKKSLKDLERSSVSISRYQAKLDEQADLSTKTLTKSFQAIREALNEREQYLQAHQQSVIEEAKKLLEERQENAAGLKFKCNRVGSMTDEETSELRNEIKHFVGERRIDEDLGKTISFVRDQEKIIEAVKNFGEVPPIKHHYTPYKRKHPEPSKPISHKPPPVKTTTASSNVSTTTSTTSTSSETKSTHSKNDKRPVLSPSRLKDQAEMHAKLKQAVKEQQVSPVSKEGSKPSDRTASEKPKPRDFGPKSNRNNNGREQQGNSRRQPQRQRQTSSSQNSTKSFGNRNEKKLTNDQNSKTPVKADGAKAQDGSPADGASQAQGGSPADKRTQAQDGSSADNGKRAQQDKTAGSNHVTPNHGNRTTKRRYIRKTPPGEGGSAFRTGTVDTSNNPSSTKENGDEAKSSDLPNGQLESQMTNGTNGFVPLPQRNRRQRKVYYKKDPGSKIEFPPARENDSVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JUA2</accession>
    <name>A0A6S7JUA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075246</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020274">
        <property type="protein sequence ID" value="CAB4034621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JUA2"/>
    <dbReference type="OrthoDB" id="6162027at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="195"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="288" mass="31235" checksum="9C6BEBEAE8400DB8" modified="2020-12-02" version="1" fragment="single">MNTYGSSILPIITIEAEESASKEEITPESAENLGAKKPGTMTFLDQQEQDKVRQLLYAYQQKEMKDNGCQTELYICKCQEVVVQRLEKIEQNVEKILMFMERSKHEEKISGPEKQILESGEFLFNSDPVYAFDNNSIEDSGSLPSLAEISNVLNIDETLPGMETSTIYLSKIATPSNQSPITPTVHHSVPAGLLKSASQSTPANPSTQQSTPAISSTQQSTPANPSTQQSTLAIPSTQQSTPVILSTQQSTPVILSTQQSTPAISSTQQSTPANPSTQQSTPAIPSTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JWP5</accession>
    <name>A0A6S7JWP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposable element Tcb1 transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062732</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011149">
        <property type="protein sequence ID" value="CAB4020842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JWP5"/>
    <dbReference type="OrthoDB" id="2417635at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tc1-like transposase DDE" evidence="1">
        <location>
            <begin position="5"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="20034" checksum="EBFEFDA6557FF2E2" modified="2020-12-02" version="1">MARFWRKKGEGLILTGKGSINLPAGRRVHVMVAIAHGKGVIVAIPQEKMNRKFFANFIKNNFNICYTKAGPKHGGKRLFMIDNDHLQSSKAAMNALRSVESELLKIPARSPDLNPIENIFHSVKSIFCEEAITKRIEAEDFSQFQERVVCALNSIPNDVIDKTIYRKFSRRRTLTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0K6</accession>
    <name>A0A6S7K0K6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Hydroxyacid oxidase 1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A026967</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>2-hydroxyoctanoate + O2 = 2-oxooctanoate + H2O2</text>
            <dbReference type="Rhea" id="RHEA:67940"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:133514"/>
            <dbReference type="ChEBI" id="CHEBI:176689"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="5">
            <dbReference type="Rhea" id="RHEA:67941"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a (2S)-2-hydroxycarboxylate + O2 = a 2-oxocarboxylate + H2O2</text>
            <dbReference type="Rhea" id="RHEA:16789"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:58123"/>
            <dbReference type="EC" id="1.1.3.15"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:16790"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020817">
        <property type="protein sequence ID" value="CAB4035200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0K6"/>
    <dbReference type="OrthoDB" id="25826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003973">
        <property type="term" value="F:(S)-2-hydroxy-acid oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02809">
        <property type="entry name" value="alpha_hydroxyacid_oxid_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012133">
        <property type="entry name" value="Alpha-hydoxy_acid_DH_FMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008259">
        <property type="entry name" value="FMN_hydac_DH_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10578:SF149">
        <property type="entry name" value="2-HYDROXYACID OXIDASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10578">
        <property type="entry name" value="S -2-HYDROXY-ACID OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00557">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4035200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="23660" checksum="16D328FBD7FD1131" modified="2020-12-02" version="1">MGTCMVLSCWSTTSLEDVASSCNGLKWFLLNPFTNRDVMANLIRRAEVNGFKAIVLTVDIPVVGKRYDGFGGMFTASYFPNVKEAFKCENLENLTPNIANTIHSSLATWDVMIPWIKSVTSLPVVLKGILVVDDAKLAVKYGADGIIVSNHGGRQFDGAPATIEVLPEIVSAVANDIEVYMDGGVRSGSDIFKALALGARAVFVGRPILWGLAYQVVQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4M7</accession>
    <name>A0A6S7K4M7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Collagen alpha-2(I) chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A036735</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009006">
        <property type="protein sequence ID" value="CAB4016178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4M7"/>
    <dbReference type="OrthoDB" id="5982709at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005581">
        <property type="term" value="C:collagen trimer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005201">
        <property type="term" value="F:extracellular matrix structural constituent"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000885">
        <property type="entry name" value="Fib_collagen_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01410">
        <property type="entry name" value="COLFI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00038">
        <property type="entry name" value="COLFI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51461">
        <property type="entry name" value="NC1_FIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0176">Collagen</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4016178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="34226" checksum="32B939A1F06A27C3" modified="2020-12-02" version="1">MYPTESYEDALLLSGLTSLFLRRQQITNKVFLNIMNDDAHKLYELLPAKNNTSLNLRKKSKFNNPRGPPGQNLVIFSDARQGQRYYRGSDPKDENKEDEIPNDLVGYVHDRYAKKLKPPGTQLFPARNCGDLFYHHPELNSGYYWIEPFILSSKNAFLAKCDFKEKHTCVYPIENRPFTHVFNYIQLMKLTLLSRHVEQTITYHCKNSQAWNEQTKKSVELIGYDAETINMASPIFYRPKVVENGCNNMDGEWHQTKLTITTKQRLRLPITAAIPINKETGEYYIEEGPICFHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6S1</accession>
    <name>A0A6S7K6S1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029566</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012521">
        <property type="protein sequence ID" value="CAB4023481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6S1"/>
    <dbReference type="OrthoDB" id="8068070at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033467">
        <property type="entry name" value="Tesmin/TSO1-like_CXC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01114">
        <property type="entry name" value="CXC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="385"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="385"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="395"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="46383" checksum="7884B5F99AE1B5F2" modified="2020-12-02" version="1">MKMAGTDPTKRKRKELDMPQRTRHEKDVLSIVNTLQNMVNPFETDTEITDMIHLSSGLVATPDVKADLLRTQQRGEECVTAFLKDRLLVSEPDIFSTIPKLKLKTFSSMAKKVKVSSAKDRYPDVSIKNLERNIRASGGLAVINIYGADQKLPAQWDKFLKHGRNKEALIRFLFEQWCTYTSMMFSGIVVYVCHDDKCHSLKPGLDNAPNIIREIATLSCDHEEADTRMLLHANHASQSHGRCDSTNSFYGRSKISTWKLVSNDETALDTFVRLGWVNSLIQHCLQMRIFLYNTSSEQITRPQYGKEQQLQQLTRLYQLIMDGRLEIGNIDVVWMTKKCAPDVLLKDCNCKCKTGCSTLRCSCKKANNQCNEMCQCVGCTNCPHESSESGSLKDDSEDDLGSDMEEENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCY9</accession>
    <name>A0A6S7KCY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013584">
        <property type="protein sequence ID" value="CAB4025402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCY9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9971" checksum="1AB9637EF6E18C18" modified="2020-12-02" version="1" fragment="single">RVEELITGKDDQVRGAAVKIRSKGMKPSRLRRPIQALIPLEINDAENEDAERENPSKKKDDPEETVETLKPRRKAAVAADELRRQWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KHA3</accession>
    <name>A0A6S7KHA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032287">
        <property type="protein sequence ID" value="CAB4043408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KHA3"/>
    <dbReference type="OrthoDB" id="8906575at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14953" checksum="4E4D0B0AD65ABC0F" modified="2020-12-02" version="1">MTLSTITATRKSNSACRLSGGISLLFKKEFENVISVEKQTKNSLWCRIDNTILNSTKDLFICGVYIPPERSSYFDEDIFHNLENDVVYFSKKGNVMLLGDFSARTSKLEDFVSKEGNTFINDITETSFEPKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KM24</accession>
    <name>A0A6S7KM24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076276</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011498">
        <property type="protein sequence ID" value="CAB4021558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KM24"/>
    <dbReference type="OrthoDB" id="276540at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37935">
        <property type="entry name" value="CHROMOSOME UNDETERMINED SCAFFOLD_14, WHOLE GENOME SHOTGUN SEQUENCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37935:SF1">
        <property type="entry name" value="CHROMOSOME UNDETERMINED SCAFFOLD_14, WHOLE GENOME SHOTGUN SEQUENCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="42005" checksum="9C012C6E33438787" modified="2020-12-02" version="1">MLIRNSISWFAFGKRVVICFKQRLSRHYGHYVGCQTQFGVFMQQNHGPKNFPLLLDKTRLINHGYGIIKQFSLLSSTELIQTLSARNVVQFWRKTGSKRQHNCLQLQSFSTSEKEKVTSTSHAELPNEHWVPYLVSRIHSLEESSRFHGYSTLRWGLSIIVAALAGVYFFRDQLRDNVADEVADVASRSMGDENVILKAHDMTKGVLKRLTSEADTSALASEFLKTVLQQNDVRNTAVSFATSIFDHPETQEKLQEVVKNTLHSILNNKETKDLLLEFIKNLIEDPQTKETCNLFLQSLTKDPDIQKMVSEFFKSVLASPTFQIEAITLGREVTNKVVHDKDIQKQTGDALWSAVKYGVTPHWFRGEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KN68</accession>
    <name>A0A6S7KN68_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038172</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034858">
        <property type="protein sequence ID" value="CAB4044414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KN68"/>
    <dbReference type="OrthoDB" id="983479at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="66" mass="7046" checksum="C61FD29512F56F4B" modified="2020-12-02" version="1">MSGASAISSADLFGEEQRSGQRGASLQSPEMYQLREGIGRMTEKISNVASGVLSTIQDRYNSGYNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KPP5</accession>
    <name>A0A6S7KPP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012087</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034264">
        <property type="protein sequence ID" value="CAB4044210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KPP5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="32652" checksum="E9A8C104696995CB" modified="2020-12-02" version="1" fragment="single">LGASDADTIGHVLGNKPETIKPDVKQKDQSKLPEKKSKEESSLSKRKAVDAFELLVYRRKHHSRLTIENLRPKSPKAKNKDDGGKGRGGWDLVVPRGLPVGCVELGARDRRKGQAKTDYYHQYFKTNSGNPKEIWKSINELMYLNAKSDGISHLTCNDRVISDSADLTECLNNHFAEIGLKLRPDEPDELNNCGFGDYLKQADTVFTLDLTTPSAVFKLLSSLQEGKTMGLDEIPAKLLKCAASVISDSLCNLFNCSIATGVFPDDWKIAKVEPLHKGDAKDLLNNYRPISILSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L8V2</accession>
    <name>A0A6S7L8V2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020985">
        <property type="protein sequence ID" value="CAB4035373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L8V2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="9300" checksum="41544A1842DA149A" modified="2020-12-02" version="1">MVELSLALKDYSTVIQCTEKLLVQDPNELFALIFLGRAQALTGDLTRSKETFSRGLSLAQQAQDEENTTKFENFLKMLEGATQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L9E2</accession>
    <name>A0A6S7L9E2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010907</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021112">
        <property type="protein sequence ID" value="CAB4035503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L9E2"/>
    <dbReference type="OrthoDB" id="6417614at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12171" checksum="F5D343C02B58352F" modified="2020-12-02" version="1">MINLLRHKPYLELLGTSEPDQQQALLETASAEQVHCLCLCVENVMERKYLMPKHVMKKLRPYKNGMLRLADRGKCGRRKKRILVQRGEGFLGLLLSPILESLAELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LC00</accession>
    <name>A0A6S7LC00_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA repair and recombination protein RAD54-like</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A005409</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SNF2/RAD54 helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020769">
        <property type="protein sequence ID" value="CAB4035152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LC00"/>
    <dbReference type="OrthoDB" id="413460at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015616">
        <property type="term" value="F:DNA translocase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016817">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045003">
        <property type="term" value="P:double-strand break repair via synthesis-dependent strand annealing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007131">
        <property type="term" value="P:reciprocal meiotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18793">
        <property type="entry name" value="SF2_C_SNF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10810:FF:000010">
        <property type="entry name" value="DNA repair and recombination protein RAD54-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000332">
        <property type="entry name" value="DNA repair and recombination protein RAD54-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="entry name" value="Tandem AAA-ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013967">
        <property type="entry name" value="Rad54_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049730">
        <property type="entry name" value="SNF2/RAD54-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050496">
        <property type="entry name" value="SNF2_RAD54_helicase_repair"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45629:SF7">
        <property type="entry name" value="DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45629">
        <property type="entry name" value="SNF2/RAD54 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08658">
        <property type="entry name" value="Rad54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0347">Helicase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4035152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="625" mass="70557" checksum="5AD49A23D8EC1DE1" modified="2020-12-02" version="1" fragment="single">MRRSLAPSQVLKRKKSPSAEDDSDSDGEEKSQRQKVQKLNREKPNFLSKFSQHSGRQPFTSLCVNGSAQLTEHEARIKNILSKPFKVPIPNYQGSSNGRTLGIKRLGPRRSLHDPDDPDALILYEPPLQTEHEKLKSNQDYEVHVVVDPILSKVLRPHQREGVRFLYDCVTGTKIPDSFGCIMADEMGLGKTLQCITLLWTLLKQSPSGKKMIDKAIIVAPSSLVKNWHNEINKWLAGKLHPLAIDSGSKDQIDSNLTSFMAQCGNRVHNSILIISYETFRCHYEKLTSSAVGLVICDEGHRLKNLESQTYQALDKLKTQKRVLLSGTPIQNDLLEYFSLVHFVNSGMLGTASEFKRKFENVILRGRDADASESDRHKGTEKLNELVSLVNKCIIRRTQAILSKYLPVKVEQVVCCALTPVQNELYHRLVSSKAAKIELGKSGSMSFSSLAFITQLKKLCNHPQLLLSDGKEGKSNEVDGLEELFPAGHNSKHFQPDLSGKMKVLDYILAMTKSMSNDKVVLVSNYTQTLDLFEKLCRLRRYQFVRLDGSMTIRKRQKIVDRFNDPSGGDFIFMLSSKAGGCGLNLIGANRLVMYDPDWNPANDEQAMARVWRDGQKKKVYIYRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LNX4</accession>
    <name>A0A6S7LNX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030983</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025495">
        <property type="protein sequence ID" value="CAB4039512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LNX4"/>
    <dbReference type="OrthoDB" id="6759919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="348"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="348"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="363"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="581" mass="65448" checksum="8930C131BED0E1AD" modified="2020-12-02" version="1" fragment="single">GRPGSWADPDKHQDISQQRNLESPTQVSNDAIATLIANQPPFKAGGLKDCVHAWTAITSDPFILDAVTHCHLEFDSLPESNVSNTRPYFTFNETEQTVIDGEIEKFLQKGIIRHSVPESGEVLSPIFITPKKDGTSRVIFNLKALNQFVSYHHFKMDTLDTAIRLMRPGCFMTSIDLKDAYYSIPIALEHQNYLKFIWRDKLYCFTCLPMEGSHAECLQATLNAVKLIINLGFKVHPDISVTLPSQCIEFLGFLLNSVTMTVTLTPDKQAKLIRLCQTFLRPNTLFTIRQVVSLIGSLVSSFPGVEFGPLHYRHIEMCAEDHSGQGNWNSCASTMDYPTNFYGSSQSVGRCSTDSQSNSPEPGSSHVGQSSSTSGSTEVYGMQVIRRSLCESAIPTDIINTIMHSWRDSTHKQYGNYINKWLQFCVQGSYDPLHPTIKCVLMFLHSLYNKGISYSSLNTARSAISNLCFTSDMDSHHVPIGKHFLICRYLKGVFNEMKPVPKYHSTWPVYLVLDYLSTLWPLEKLSLKELTLNLVTLIALTTGQRCQTLTFLDISTDYMSKTDDPYRFALTEHVKQDRPGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSP2</accession>
    <name>A0A6S7LSP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031898">
        <property type="protein sequence ID" value="CAB4043262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSP2"/>
    <dbReference type="OrthoDB" id="498125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21803" checksum="72CA7CB8C870FE9D" modified="2020-12-02" version="1">MRCLHGEPAAHSTTQNGSFWFCNQNPSCNFFCCEDEGYLYEKAITAWRATKQPHPRCCEHSKLAKMRVVRNLMKASYGRPFFVCSNKLKPCSFWVWGDVRPLVKPECHHGLPCMVRKVKKEGLNKDREFFCCSNDKESSCKYFDWVPEEPYQDVSFVEPLSSKPSEKHEEHYLANKFINDFANSLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUG2</accession>
    <name>A0A6S7LUG2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003155</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034328">
        <property type="protein sequence ID" value="CAB4044233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUG2"/>
    <dbReference type="OrthoDB" id="5956630at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="24036" checksum="AD04FA02500317B8" modified="2020-12-02" version="1" fragment="single">MASSGFDNFDVELTEEDIPGASLAGRIPSKLNMDELRFWLKCRGDSCKGLKMKAQFVKRVDEYVKSGRDKSIVNPDENKIFSKRKARKQTSQEIEPDTNELENTLNTSRVIYPTNSWSTSLSRMPLFTRAEMNLHISKSGKSFYPHSKNHTVPTCMRRAKTFLDDEYLKDVLANSDEKHFYCKCLCYHSFKKNEPPHKLKVALDIVSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6H5</accession>
    <name>A0A7D9D6H5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003418</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000060">
        <property type="protein sequence ID" value="CAB3977646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6H5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="177"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="252"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="39649" checksum="688451515B178BF0" modified="2020-12-02" version="1">MSGTTEFMQFVNYMQCCLSDKNTAILTNLYVNFTQYQPPIGCCNFAEKFIFWKQLYDQYNLEQEKITNANLFAAPTPPTDSRLKPSRNQLPDDLTSLCDENDIELFQNFSLKNEVTTTTISPTTTTPSPQPTNCDETQDIAYNTDNESTAIITPLAMENNTGDIIEIVNETTITEQNPLAASSSSEDEEKAPPNYERSPSRGKNIEQLKAIYNKEETVVATATKSKQSKPIPVPRKRKRPAANTEGPGPGRPTKDSALLRDTKSGEADGDDTFAIREVALFLGNGSVRKKAKLLTKHDKDIKCFAIKHYAPLEFIAEEKVKAFGKIKEQRHKLKVLNYMEQNVLANLQEIQNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6H8</accession>
    <name>A0A7D9D6H8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036508</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000084">
        <property type="protein sequence ID" value="CAB3978001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6H8"/>
    <dbReference type="OrthoDB" id="6090131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="476" mass="55683" checksum="159FF6C811CC5715" modified="2020-12-02" version="1">MASKYKRPYRDFSRDFGFKHIFIYFCNKTAGERQAELHTKVIEESCEDKRQCLVAFSSLLDESIALSCMSFQDAFDEYIGKIPSLACIKKDKHDIRCQFKDKILSKNGLPVLYLENNGSSFVMLQDRPLDKITLCQSLDQVLDAPRESGADEVPNVFSSIPDIMELLSTAKDRAILTFVLSSVFSATKLSLALGMQHQRTQNIKQKVDELLDQINDIRKEADGEAERKIEAVISQLQLEIERDSDHLNLKRARLHEEEIEERSFEIELKRRRLDGMEGKSKSSAKKRLSKRLIKNWKNSLMSQKGKGEGRYRIDRGAEQAIYEVLQEQLKAHSRRWGEEGTGYLEHDKRLHSKEMRRIANTYLRKRGKKTIRSKETVHSWGRCRNRRSRQAKQHRGRNLWAHLRPQKKWKEGHINIHYNRAHIKNYTRFAFSNDNKERQPYVIRRAIDDKTYVRCGTSEGFSRPLHTPVQLSNEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6I1</accession>
    <name>A0A7D9D6I1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A069688</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000081">
        <property type="protein sequence ID" value="CAB3977937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6I1"/>
    <dbReference type="OrthoDB" id="5957748at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031037">
        <property type="term" value="P:myosin II filament disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903013">
        <property type="term" value="P:response to differentiation-inducing factor 1"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04515">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992:SF2">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3977937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="46199" checksum="E8E0152628EFC9B7" modified="2020-12-02" version="1">MSKRNCKEDFAKFKERISKKRRKEDTTSKSDMDYITVQRLSSHVEGRYQKYARIGPLASIPLGREPTIQNIKEACKRYFNVEDGSHCDILAGERGPSWTETSQLNNWKVIHIRFIEESDECQLRDEKLVEISSSQRWKSHGTPKKTTPSMSTKVAASVPLSAMLKLGKIIQPTEEIVTVQLEEFKINEKAWAQPFEATLSLSKEKFASGGIRNAYIATPLSGLSPGKYVLKKIKEEKVDEIEKLFKSIEEHTRKAVQMNALVRNFAMTLASEAPVEYGCVLSYTKVYFGRLYGEFVTLENYLEGEFQKYVNNTGEVYGESEVTHKAEAFCHYTYERSEHQLMVVDIQGVDHNLFDPEVASSTLFYANDKTIFFCCGNLSTDAIDMFKAVHVCNKFCHMLKLKEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGG0</accession>
    <name>A0A7D9DGG0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Small ribosomal subunit protein uS10</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">40S ribosomal protein S20</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A058653</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000706">
        <property type="protein sequence ID" value="CAB3984195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGG0"/>
    <dbReference type="OrthoDB" id="10248551at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.600:FF:000002">
        <property type="entry name" value="40S ribosomal protein S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.600">
        <property type="entry name" value="Ribosomal protein S10 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00508">
        <property type="entry name" value="Ribosomal_uS10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001848">
        <property type="entry name" value="Ribosomal_uS10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027486">
        <property type="entry name" value="Ribosomal_uS10_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036838">
        <property type="entry name" value="Ribosomal_uS10_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005729">
        <property type="entry name" value="Ribosomal_uS10_euk/arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01046">
        <property type="entry name" value="uS10_euk_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11700">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00338">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00971">
        <property type="entry name" value="RIBOSOMALS10"/>
    </dbReference>
    <dbReference type="SMART" id="SM01403">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54999">
        <property type="entry name" value="Ribosomal protein S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Small ribosomal subunit protein uS10" evidence="6">
        <location>
            <begin position="315"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00035450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3984195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="413" mass="47153" checksum="46C40ABE1144844F" modified="2020-12-02" version="1">MVTVLCSDWSNSVCISSWKITPENSPGFALAAIWLIIFILTTILPRNFSEDEDLSDRQLVLTPNGFTESYEEDPQKLAVNKSQILCLLSYVFFIWFFASVTAYNTPLLATELFNLDQFHINLLFGNALLFQMVLYLICYILRERLNEIVVLLIAMFLQAIPLSIMGTFGINWSNNFIYLLLVYIVIGSPLVAITLSCSLLLKITHPQLTTYYQQLAYTSLHIATVFGRILAAFFFAKTLLAWLALQLAYFPSYYARNGFWAKLAPRVFLSRVRPFCSKLTFWLTAVLERLSRPEIKMSFKDKGGPEEEAQIHRIRITLTSRNVKSLEKVCSDLIKGAKEKKLQVKGPVRLPTKRLRITTRKTPCGEGSKTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJL4</accession>
    <name>A0A7D9DJL4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011132</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001078">
        <property type="protein sequence ID" value="CAB3986829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJL4"/>
    <dbReference type="OrthoDB" id="8906575at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="549" mass="63863" checksum="1543F01E8FBC9D0B" modified="2020-12-02" version="1">MSTNLSFSTWNIHGISNVVLGEKTKNKDFIDHINNIDFIFLTETWCNSNIDVPGFRSFVSDTAKPHTNRACRKSGGITLLTRTKFEKFTSIVKNSKNFLWCKISKDVLNAKNDLFVCGVYIPPEKSVYFENEIFDELENDIIQFSSKGNIMILGDFNARTNTLEDFISKDGNNFINDTSENCFQPKNRLNFDHQINNHGKQLINLCKNCDMKILNGRTKGDSFGRATFHGNSGISVVDYIICDQELFRNTNYFVVKPPTYLSDHSQIVTWVGIGQTNEKPDTNPGCNIEMTKLPNQYIWDNHSKNNFRESLRSQEMQKKLNEFMNSDFTNDLNGANQCVTEFQNILLETSKKSLKIKKCKRRRKITNIAQRKWFDKDCRIKRHDLRKLSNLKHRDPTNVELRKNYHDALKSYKATLQLKRSEFHNKKMNELETASQNDFNLFWKTLKNLTDDLNTESNSENSPKNHEWYSHFEQLHCDHHLSEEQEKIIGKLKQKENSKNLLNELDAEITIEEIIKTAKKIKSKKAAHSDKINNEMIKYIVLISLPMVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DT95</accession>
    <name>A0A7D9DT95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107352855</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059909</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001744">
        <property type="protein sequence ID" value="CAB3990886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DT95"/>
    <dbReference type="OrthoDB" id="5954938at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF13">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="150"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="412" mass="47994" checksum="DDA1DD1D0375D3CE" modified="2020-12-02" version="1">MYLVLFLFLPLYLRCEAVLPPYLPILENNNFERVDLIERYFHMGLGYSEIVLFLGLLHGYVLSIRQLKRILQQRGLGKRRNRSNIEEVYRAIRRELRGSGSMMGYRQMTRRLLHGHGVVVDKETVRELLKILDPEGVDARSRDRLQRRQYKTEGPNHVWHIDGYDKLKPFGFCIHGSIDGYSRRVMWLDVGPSNNNPSVIAQYYIECVQQIGGTARIIRGDCGTENVHVAALQRFFNNDEQSFLYGKSCYNQRIEAFWGMLRRGCVDWWINFFKDLRDSGLFCDTDDIQVECLKFCFTSMIRDELHRFAMEWNLHRIRKSVNAESPSGQPDVIYFLSSRTDDARDLITPVSDEDIEIAQQRCCVQTPEHGCSEEFVELASIIMLEKHLEMPTNSEDAVILYSTIVEEIGQIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DZ27</accession>
    <name>A0A7D9DZ27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022846</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003196">
        <property type="protein sequence ID" value="CAB3997819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DZ27"/>
    <dbReference type="OrthoDB" id="5986507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30818" checksum="747644069054C6ED" modified="2020-12-02" version="1">MPPLRRVKVRRPPAPWMQSCVIQELKIKRDTLRAEAHATNTAKSWNALRQVRYRIKSEIGKAKRRFVTKSLLSKRPKEVWRVIHRILNPSHKTIQADPGKLNQFFITTSHRTLGSKSDADAVGNLTRLVQSLQEHTTQGHTFNLQQVTVREVEQEIDRLRNDTSTGVDRIPAKFLKFAKQDIAGPLTHIINTCIRNSYFPETWKTARVSPIPKVNQPSCDSDFRPISILPAMSKVFERLVLNQLFKYIDDQALLCSTISEFERDIQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E173</accession>
    <name>A0A7D9E173_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MD-2-related lipid-recognition domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067363</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003138">
        <property type="protein sequence ID" value="CAB3997593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E173"/>
    <dbReference type="OrthoDB" id="5970827at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003172">
        <property type="entry name" value="ML_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02221">
        <property type="entry name" value="E1_DerP2_DerF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MD-2-related lipid-recognition" evidence="1">
        <location>
            <begin position="80"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23425" checksum="E8C040CF2D203136" modified="2020-12-02" version="1">MFTLMKSRFFGIGYKKRVCMCVFLGLVCLVLIAKEYLRVDFSDIQSVHRAFSGKSSRSNFDWDGWVERNRYRSIGDVYDICDSKSNDRVKVGKAILSYNPENRRIYATIAANITLADDLVRGTANIYASYRGRVLFNETFDVCRDLHVKGLKCPMRKGIASLILDSFKCILLKNYTIHFSNNLITGDKISVHEKKKFPSHIPSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E1F4</accession>
    <name>A0A7D9E1F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042723</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003318">
        <property type="protein sequence ID" value="CAB3998294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E1F4"/>
    <dbReference type="OrthoDB" id="5987296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7263" checksum="4920914604A72515" modified="2020-12-02" version="1">MTLRKLEDKDFESLLLEQHEKAFKTVKDYLAKAPVLAYYDVTKEVTIQCDASETGLGAVLLQED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E1N8</accession>
    <name>A0A7D9E1N8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Polyadenylate-binding 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A076740</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002931">
        <property type="protein sequence ID" value="CAB3996710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E1N8"/>
    <dbReference type="OrthoDB" id="4726at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008143">
        <property type="term" value="F:poly(A) binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd12550">
        <property type="entry name" value="RRM_II_PABPN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000311">
        <property type="entry name" value="polyadenylate-binding protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23236:SF12">
        <property type="entry name" value="EUKARYOTIC INITIATION FACTOR 4B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23236">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="70"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3996710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="28938" checksum="11BB577B3D695CD2" modified="2020-12-02" version="1">MGDEESDSRGRRDSALESPDLDVEFNWSKSLDESSTDGVLGLETNLDPNLDVLDDSREQGEDDAVDDPELEAIKARVKEMEEEAEKLKDMQKEIEGSLNLSMSPTNAALPTLEEKQEVDARSVYVGNVDYSATAEELEQHFHGCGSVNRVTILCDKYSGHPKGFAYVEFADKESVHNSTVLSDSLFKGRQIKVMPKRTNQPGVSTTDRGFPREYEVVECTDQDGQDGIHTNHAAKVSSILDGLTTFVLLWIISGETEFLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3C6</accession>
    <name>A0A7D9E3C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000088</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003893">
        <property type="protein sequence ID" value="CAB4000677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3C6"/>
    <dbReference type="OrthoDB" id="6740508at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599:SF2">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17884" checksum="A93D72531D01653F" modified="2020-12-02" version="1" fragment="single">DKRLVTILSTNVDPQPELFGPLDERTAKRNAVPENLCIKPAVISFYNKFMNGVDVNDQYRSYYPVGAQSKKWWKYLAWSFVNTLIVNSFILQNLQTDRHRRLKHLDFRLALARQLISTYNGYKRISSDPTSRKKDVPVGRNVKGHSLVKSSERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E899</accession>
    <name>A0A7D9E899_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Stress-induced-phospho 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A024163</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004486">
        <property type="protein sequence ID" value="CAB4002923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6088515at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056681">
        <property type="entry name" value="DUF7779"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35205">
        <property type="entry name" value="NB-ARC AND TPR DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35205:SF1">
        <property type="entry name" value="ZU5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25000">
        <property type="entry name" value="DUF7779"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="826"/>
            <end position="847"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="828"/>
            <end position="847"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4002923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1510" mass="172228" checksum="69FE27F27367AF64" modified="2020-12-02" version="1">MASAISISDEERRWTVVGICFTKVLTPNLRKVVAKELQIWYQRLCRPPDEIHKQGFGMFKKKLPPSRFLLQYKNINKNDVHKSPSAYDYKVKDPLSLAKLFVQPFMAMFTGFDQTMDTSAVLAVMSEADPFVTSRAAADAKTVRSDIRNKWAHCNFSDWTEPSFLAAFQQMECLVKKMNLPPPDEKDLCDDLDSWKDKGLKLCFGQPVDPELLKLVMEEVAELRTSVETWEFENDTQMNKLLEQLGNMQSNFEKELRGLVKRIEKCERLGAENSKELERLGTKFSTELSKYHYKQEEKIPYVFDAPDRNQYFSGRTRELQELQRILKLDDVGEEKKVCIGAVCGLGGIGKTSLVTEYAHKMKKYYRGGVYWFSAEDDQFFEQSVNDTALKLGALLGTFDLTLTNTLIRIGQSSEPCLIILDCLDQLDLSPNILKFLSIVSRQSVSGAVVVMTRRNESLLVEEMSSLYKDRCLTLKCLELEEAKQFLFRRTGLSRDENTNSVAESLVEELGGLPLALEQAGACIKALRCSFPVYLEQYKTKRVQLLERQKAKPVSVYESPERLAVHTTWLLNISHIKESPDGMSAIRLMNAYAFFNPNEIEEELVNVGEPPIEDEEFRDCVSSPFGCRQVVKLLTDFSLFMYVHAHSVSTHRLVQELVRENLDAGEKAESFVDAVRLLSLAFSKCTSPKGLLCNVGVEERLKSFDFPRNPSEYFLWSKLCFHGFHLQQNMEKLLAKPEPKCLGSLFVFETAKILHECVVHLSANAKQEEAKRTLNLVYRILDWVPLSEYDTIERNLSRNSLFSSHVIPLPKWLQIVIKQRCVPPMRSLEPLDEKPSHQADSSDSRKLEQNVEKLRLEGNKSFKDGLYEKAVKAYSAAIDMSKNTPAFNPLLLTNRATAYIKLNQRDTALKDANEYISRFPVCWKGYARKALALDEKVSAEIAAALAYYYYCRLKDGSCIFSEYPPFKEAFPGLKERIYICNTGSQLIAEFMSSIIRNYPDLRIVILGSKEYVLTSTRLPEAEGTITPIPVKNCIMVGAKSDRSVNIKFEGDTGLNLYEKCMFANLSFSIDKGQIISLPESWVKVLNCNFTSNSAVSAAVGNQGMFNAQRCNFTDCKAGGLLCARTGNMVVDDCTFARNMKAGLEVRENGILTVRNSSIYNNHWDGLAIGPRAAKCDSFDCQIYHNAREGIAVIDDSKCITLMRNHIFGNDENGIYVRNSAVDMRQNKIFDNESWGIWSGIDSWCNVSMNDIFRNKRGGVRVGKRRAGQERPHSVVELNTIHDNYGPGYINNIHNFEDVRVFFQRVGLSETTGDYESAKFVQNVVYNNEERIIVDQSKLSSSWCSGCFGKCEELKPCGKCFTAAYCNKNCQKRHWSRHKKLCKVLREKSSFLIPFTKKRGFRESVNVHRKGLDGVGPDYSSPPPRDGKRFIVKVQTDFDSGAYGERYKLVIYDRSFDVYEDFQAEFIDHLVKDFGVLCKRKYFEKKLFLYCAFEENGKLRLFINNFADFQTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDM0</accession>
    <name>A0A7D9EDM0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A005927</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005018">
        <property type="protein sequence ID" value="CAB4004843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EDM0"/>
    <dbReference type="OrthoDB" id="6627079at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF269">
        <property type="entry name" value="NUCLEASE HARBI1-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4004843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="273" mass="30924" checksum="9629DD662840EF58" modified="2020-12-02" version="1">MRKRKCIAILVLQGLLEIYKNPRGKTRSWIRKRESRGFYTNIVREMMVEDTAAYREMMRMSYDDFKVLLRVVEPHISPHQVQGGQKVIPALERLTLTIRFLATGETYRSLCFQFRISVAAISYIVEEVCEVIVKHIGPLYLKVPSTTEEWLEIAAKFEERWNYPNCVGAIDGKHIVMQPPANAGSFFYNYKHTHSIVLMAVAGPDYECIYADVGTNGKVADGGAWIKCSLSKSIDDGTISLPSARCLPFGVTKIPYLFVADDAFAMKPNVMKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPB3</accession>
    <name>A0A7D9EPB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013390</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007405">
        <property type="protein sequence ID" value="CAB4012160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPB3"/>
    <dbReference type="OrthoDB" id="3261222at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4012160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="27085" checksum="5FBC1B9E136BCE66" modified="2020-12-02" version="1" fragment="single">MDEGKINGVVFLDICKAFDSVNHEILLEKLKTQFGIHDIELKWFQSYLRNRKQVCSVNDQTSSARTIICGLPQGSILGPLLFLLYINDMPDILERTTPCLYADDTQISSSSHDYDTLIDNLNMDLSSIQFNCHDYLIISGGSSKKFCGTTTPAPFVPGLNVVTLKMVTDRSIERSGFDLSFTTVQTTGLPPAVSVCPTRSIIPSAIGRVHSPGFAGKYSANLNCKLTLNVPSSKVVEISYNHVDIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EVD2</accession>
    <name>A0A7D9EVD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger 862-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A038882</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009892">
        <property type="protein sequence ID" value="CAB4018190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EVD2"/>
    <dbReference type="OrthoDB" id="5979169at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057456">
        <property type="entry name" value="Znf_C17orf113"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF5">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25431">
        <property type="entry name" value="zf-C17orf113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C17orf113 probable zinc finger" evidence="2">
        <location>
            <begin position="85"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="184"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="761" mass="87100" checksum="C206DC601D9167D2" modified="2020-12-02" version="1" fragment="single">PEALEAVEGVSRNSDNSVDELNDHLDEDHEVAVNLEMDSDMCVSDEEEGQPLLKRMNSLPPRKQRKKARAPPVFPKKWLSNPKYKEWLRYDVQHNTMWCDFCRSNKICGVWAEQGTQNFRKKTLLVHMASNDHARFALARNPAQSTVVKTREKMKKQEARSYKSALRTVYWISSEEIPNCKYPSLLQFQRKQGVKDIIQMNRGKNCKKESPESFHELLHSLSEVFQRKMLNHLNSSPFIGLGIDESTDRSQEKHIAAVVRYVDSNETKIKTSFLKLSVITSGTAPAIVEAVKKILGDFSIPVNKLTGLGIDGASVMASDMNGVLGLLQRENPFLIGIHCINHRLHLAVSKAAKDIKNVNTLSTILSTIYQHVNNSPNRLQKFKNLADVLGAINHDNAPEEGNENIAPSLKYLKFKRIFDIRWLSVGEAVKAVIHNYQPLLILLEEEAANDEPTSMGLLEKLSSYKYVALLHLLGDVVGATNHLCRIFQYRDISFSTLQSQLPIFVETLQDMKNQPGKYLQMFLECVEEGSDEIIFEGVHLKTNPHRNERMNQLEEFETDRQAFIDALVNNITSRFPNVQLLSAFQIFDPSAYPENLQQLAGWGYDHLKNLLDFYGEPKRLENQVIQALVKPEAAEEEFLFFKRLVYQNRGEDRNENEQLKFCFYKPQELFTKLFGGGNVDNKMIYPQIYKLMVLTLTTMPSNAEAERVFSVQNRVKTKLRTRLGINILDELVRVSYSKTSGESLDLDTALAIFNEKPHRWY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EVH5</accession>
    <name>A0A7D9EVH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Kidney mitochondrial carrier 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A054744</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the mitochondrial carrier (TC 2.A.29) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009394">
        <property type="protein sequence ID" value="CAB4017079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EVH5"/>
    <dbReference type="OrthoDB" id="756301at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.40.10">
        <property type="entry name" value="Mitochondrial carrier domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002067">
        <property type="entry name" value="MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023395">
        <property type="entry name" value="MCP_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018108">
        <property type="entry name" value="MCP_transmembrane"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050391">
        <property type="entry name" value="Mito_Metabolite_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45618">
        <property type="entry name" value="MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00153">
        <property type="entry name" value="Mito_carr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00784">
        <property type="entry name" value="MTUNCOUPLING"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103506">
        <property type="entry name" value="Mitochondrial carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50920">
        <property type="entry name" value="SOLCAR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4017079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="41627" checksum="56DED86893DD95BB" modified="2020-12-02" version="1">MATSSAAVTATKGPKLKVLPFDLHGDRLDLGKRWEKWFERFERDLEYNGCDPSKTPEIAKMALLIYAGTEVEDLHATLPEPGRPEGTEEENWTAYEQSKTKLKIHFSPKQCNDFAIFELLRMKIESSESITSYAMRLRKAASNVAPALLRQATYGTIKIGMYHGMKRIIVKNPKDEKFYYNIICGVVAGAVAAALCNPTDLLKVRMQAQSQGVAPSQGIFSSFAAIFREEGFSGLYRGVVPNAQRAAVIAGVELAIYDWCKKKILDNDLMEDNVYTHFLSSFTAGFAGAVASNPIDVVKTRLMNQRKLKHNEGGSQIYKSSLDCILTTLRTEGFFALYRGFIPNFVRLCPWNIVFFMSFEQYRKFGDRVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZJ5</accession>
    <name>A0A7D9EZJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023910</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011146">
        <property type="protein sequence ID" value="CAB4020834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZJ5"/>
    <dbReference type="OrthoDB" id="7474070at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048367">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21789">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="852"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="852" mass="97000" checksum="BBB0C92E15BB91CC" modified="2020-12-02" version="1" fragment="single">IGPKLASVISPTDIDPIQPIQPCRSEFNLRTITTTELIQTIGKTNLNKAPGLDKIPIKLIKLAGDAIHDSLLHIFNLVLGTGVFPDDLKLAKIIPIHKEGDKAECGNYRPISVIPTVAKILEKIIYDQLSSYINDNDIICKQQFGFRPNHSTETALLKCTDQWLLNMDKGMANGVLFLDLKKAFDTVDHSILLQKLYQYGIKGTPLKLLASYFNNRKQVCVINNNKSGQETVQCGVPQGSNLGPLLFSLYINDLPMCLEYTQASMFADDTNLSCTGRTPAEIEHKLNADLSNVNDWLEANRLTLNTDKTEFMLIASKRKLNQFRTDIRIHINGSIIKQDSITLQPEDNDVMESLFNNLRACKKSHTQDPEDFKSLFLQQQENALHSMPHLQMLKDSGLLILPDKRTLRDYSNCFKAGIGFDSAFLDLVKKDFLDRSDPLKESDAWVGIIHDEVSLRQDLVFDDSGKLVGFVDLGSTQNSIDFLENSLSSDNSSNSPDEATHMIVFMVIGLFSDWKIPVAFFPTTTIKSFALFNLFWKCVQELEERGIKVLSTTCDGASPHRTFYKYHCPPGDPKVHLLKTVRNNWENSFWRNKTRKLRNNGMWITWLQLIDAFENDVNESNASGLRILHKLNTNHLFLNPYLRMRVYLAAQVFCNRVACAMTVQGKAGTEETAKFVKHMNDFFDCLNANKVYTKFQFRSVYRAPDDQRLVWLKSEFIKYFEDWKKWAMSQTDVSEKERKKYFISDQTWEGLQICVNSFVEVVHFALQIPGVDYVVAIKFNQDPIEKFFGKLRQQRGAYGAFSCNEFQQSYACASFSQTHAIKVVRQLKRNAGSLDALDPDLQLVKSNKIGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H7K4</accession>
    <name>A0A7D9H7K4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TIP41-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A014480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TIP41 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000050">
        <property type="protein sequence ID" value="CAB3977496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H7K4"/>
    <dbReference type="OrthoDB" id="10253878at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031929">
        <property type="term" value="P:TOR signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051330">
        <property type="entry name" value="Phosphatase_reg/MetRdx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007303">
        <property type="entry name" value="TIP41-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21021">
        <property type="entry name" value="GAF/PUTATIVE CYTOSKELETAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21021:SF16">
        <property type="entry name" value="TIP41-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04176">
        <property type="entry name" value="TIP41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018951"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="30634" checksum="20F94F0A7692AC90" modified="2020-12-02" version="1">MKRSETFNFGPWTVTSVKGTILKADALERFTNELKLPSLPEMVFGDNCLRIEHQAGFGLEFNALDALRLVDSERDLMKVACAEDWQKSRCDSEQSTVVVKPFDWTFTTDYKGSLTGKGDIKFKVIETDETIDIELLKKKEKIYFFEDVILFEDELADNGCALLNVKMRIMQGSFFVLLRFYLRVDGVLVRINDTRIHYQAGNNYFLREYTSRESSASEIKNPFEDAATICDNLGLKFECSEKLVFPETVDVEGPQLATETTESLKTET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HDL5</accession>
    <name>A0A7D9HDL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A056384</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000345">
        <property type="protein sequence ID" value="CAB3981018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HDL5"/>
    <dbReference type="OrthoDB" id="25571at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000781">
        <property type="term" value="C:chromosome, telomeric region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005662">
        <property type="term" value="C:DNA replication factor A complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035861">
        <property type="term" value="C:site of double-strand break"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04478">
        <property type="entry name" value="RPA2_DBD_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040260">
        <property type="entry name" value="RFA2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014892">
        <property type="entry name" value="RPA_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13989">
        <property type="entry name" value="REPLICATION PROTEIN A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13989:SF16">
        <property type="entry name" value="REPLICATION PROTEIN A2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08784">
        <property type="entry name" value="RPA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OB" evidence="5">
        <location>
            <begin position="82"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Replication protein A C-terminal" evidence="6">
        <location>
            <begin position="191"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="193"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3981018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29522" checksum="5AE2CC9C40132F81" modified="2020-12-02" version="1">MTLYDFIENQFGDRKMSSFSSPGAGGGFLDGTFGESPASQQRMKKEKKSTAVVPITVAGILNAKYQSDVDAFVLNEASMHQVTFIGMVLSVTENRTHLSFEIGDLTGGIVSVKRWLDQDENAEEYERARFREDTYVRVLGNIKRLDDDKKHVVAFAMRHVTDFNEITFHMYDVIHAALSMQKRVHEEAVTPDTTTNFGNNNSFSAQRNQFGPQIGNMSQAQKRVYEMVNQAKSQEGIYVDDLVKRLNMPEQSVRYVPCILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HE48</accession>
    <name>A0A7D9HE48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083154</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000115">
        <property type="protein sequence ID" value="CAB3978468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HE48"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="169"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="174"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="21517" checksum="3D0C52290EC26465" modified="2020-12-02" version="1">MSKLKCVINYKHLGDNNIQKNSIQRISQRFLHHAARNSDDRPTTCVVRSSSGDIDIPIILLGIQPIRNLEIYINNGSGKTRKSLHFNSCSLTSLEKTALVGNDYVSSFLCRGKPLCWKQASANPIFLDIFSQLGTETHVSEELFGVIENLATDWIEEAYPEDVSELLVERDAESEGECEEEDNAYCSSSDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWU8</accession>
    <name>A0A7D9HWU8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Voltage-gated hydrogen channel 1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Hydrogen voltage-gated channel 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A075744</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002042">
        <property type="protein sequence ID" value="CAB3992398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWU8"/>
    <dbReference type="OrthoDB" id="427456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034702">
        <property type="term" value="C:monoatomic ion channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030171">
        <property type="term" value="F:voltage-gated proton channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031846">
        <property type="entry name" value="Hvcn1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46480">
        <property type="entry name" value="F20B24.22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46480:SF1">
        <property type="entry name" value="VOLTAGE-GATED HYDROGEN CHANNEL 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 13" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-0407">Ion channel</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 15" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="77"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="Ion transport" evidence="16">
        <location>
            <begin position="76"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="13">
        <location>
            <begin position="198"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="14">
        <location>
            <begin position="25"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00031989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB3992398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="27438" checksum="624A08621777F3A2" modified="2020-12-02" version="1">MANSDTIESYDNAASVGKNEGSINTDKDETKQQEGSKMKTDEINLTVDNEDGSESERRCGLLQDRVRLQEKLHSHRFQMIIISLVALDFLIVLVQLLMDIQVLKGVDHDHVGIEVLHYMSIVILGLFLVEIVVKLYAFGLDFFHHKLEVFDAIVVIVSFALDIAYSGNMDAWDAVGLLVLLRLWRVVRIVNGIVLSVKIEMDEKMHHLKGEITELQTQLEQYKNRCKEQEGKITELELSKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I129</accession>
    <name>A0A7D9I129_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ethanolamine-phosphate cytidylyltransferase</fullName>
            <ecNumber evidence="10">2.7.7.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">CTP:phosphoethanolamine cytidylyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A062069</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from ethanolamine: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytidylyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.14" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020002899">
        <property type="protein sequence ID" value="CAB3996578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I129"/>
    <dbReference type="OrthoDB" id="17102at2759"/>
    <dbReference type="UniPathway" id="UPA00558">
        <property type="reaction ID" value="UER00742"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004306">
        <property type="term" value="F:ethanolamine-phosphate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006646">
        <property type="term" value="P:phosphatidylethanolamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd02174">
        <property type="entry name" value="CCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041723">
        <property type="entry name" value="CCT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044608">
        <property type="entry name" value="Ect1/PCYT2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45780">
        <property type="entry name" value="ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45780:SF2">
        <property type="entry name" value="ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 14" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="8" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cytidyltransferase-like" evidence="13">
        <location>
            <begin position="10"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="Cytidyltransferase-like" evidence="13">
        <location>
            <begin position="215"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="163"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="12">
        <location>
            <begin position="163"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3996578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="41789" checksum="DF8E21332A6E1DAD" modified="2020-12-02" version="1">MASNESVRVWANGCFDVFHFGHANFLRQAKVMGDYLIAGVHGDLDIAKNKAHPVMGENERAKIISAVKWVDEVQTGIPYGDVLKTLNEHACEFCVHGDDIAQDASGCDIYSECKENGMFRECKRTEGISTTSIIDRILLGNAGGHALGWNKTENEMKNECEPSHVDGEAQIPKESESNGSSRPFLEMPEEYYQEKINEFSSKISNPSRKKKMIYTQGVFDLFHSGHVDFLEKCKTSVENGFLVVGILTDEEVHRVYGSYPVTNTYERALALLSCKFVGQVKIGVPYEITSQFVDDLKVEYVCHGRLWELPSDPYKAIREKNIFCQIDSGNDVTTRTIIERIIQSREMYSERNAKKPESQFSRVRLQGNKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I1P5</accession>
    <name>A0A7D9I1P5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002476</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002460">
        <property type="protein sequence ID" value="CAB3994422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I1P5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13952" checksum="D9C394622313A813" modified="2020-12-02" version="1">MTGYFKGRLMKIKRSMVMAKRFATDNATLVPDIETLILHIIFALPTSRPPRIWDDFTIHVGKNEQQTIISLTAKLVTKYVVGVFVWFMKMLYMITPTLPKIPSKRHTQLVIMTPMINLEDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I966</accession>
    <name>A0A7D9I966_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A021029</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004770">
        <property type="protein sequence ID" value="CAB4003955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I966"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="31"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="92"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14946" checksum="3E4FB8F650370CF9" modified="2020-12-02" version="1">MVVHHDQLKCSYIPFEEGELVCPSREVVERGADQHTCQRVERKNRSAERQPKRKIKKTKEEQKKKAKKGRVTTASAMIDLTEKLAGMQNSQMEMMEKAQKHAEDLLVKLEADQRKLNEEGHRRDQEFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAD4</accession>
    <name>A0A7D9IAD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004086">
        <property type="protein sequence ID" value="CAB4001437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAD4"/>
    <dbReference type="OrthoDB" id="5982901at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029359">
        <property type="entry name" value="FAM181"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33766:SF1">
        <property type="entry name" value="PROTEIN FAM181A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33766">
        <property type="entry name" value="PROTEIN FAM181B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="269" mass="30002" checksum="771B2510A7248990" modified="2020-12-02" version="1">MSLETEHRAFANKQRSQIDGLCPDSEKNDGATFGQSLINFMTLATGSVKTALQKPANYKKNINHRRYLQKQLKICSRRKKRSTKAKTGPKAKKGASKQALGTASEVWFGQANCGDIFMASEGNLNQQFSTNNNLFLPYEAAFNGVGSGYNIQNSLTNSTNFQNRFAWNNFTYAGQEQANLLAKQQIDNTSSAFFRDDSLPVMLDEEAEQFLTGEELTHVLDIKDLFVPERAHAENGSNDILKFNSSCTFDENIYSGFQTVPSTTSILSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBI4</accession>
    <name>A0A7D9IBI4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized family 31 glucosidase KIAA1161-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A001785</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycosyl hydrolase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004295">
        <property type="protein sequence ID" value="CAB4002227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBI4"/>
    <dbReference type="OrthoDB" id="10070917at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06592">
        <property type="entry name" value="GH31_NET37"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="entry name" value="Golgi alpha-mannosidase II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050985">
        <property type="entry name" value="Alpha-glycosidase_related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048395">
        <property type="entry name" value="Glyco_hydro_31_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000322">
        <property type="entry name" value="Glyco_hydro_31_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43053">
        <property type="entry name" value="GLYCOSIDASE FAMILY 31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43053:SF4">
        <property type="entry name" value="MYOGENESIS-REGULATING GLYCOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01055">
        <property type="entry name" value="Glyco_hydro_31_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21365">
        <property type="entry name" value="Glyco_hydro_31_3rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51011">
        <property type="entry name" value="Glycosyl hydrolase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 31 TIM barrel" evidence="5">
        <location>
            <begin position="289"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl hydrolase family 31 C-terminal" evidence="6">
        <location>
            <begin position="541"/>
            <end position="616"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF21365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4002227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="630" mass="72436" checksum="DDDB23959A78D273" modified="2020-12-02" version="1">MRTFYYRNRSTTWLVIFFVALLIILTSIRRKRSLRKSWSNDERGLFRFDHHTREIQVRNLKGEIILEGNLGMNIGSSYSNPEESTKDGLHYTWGGHILQSIMKGDKNCITIDWDSISDEPFTPMDCFNLGKFYWYGGGQLNVPSWPLNKADLQMSPFYAKVYKDIDNQHFTSVIEPYWLSSSGVAIYVDEIVPLHVSINERGNGKLCLKADAEGYPGHPKPVHLKYRMCFGNNMKSTHQFVASKYFDKPSESLSSSMIRYPICGLKSPNQVKMTRFFRSIVIRQFSCGHIDLGLQRSLVFNKQDFPNPKVLVKEIQARKLKVTAMVDSVFDTKQNVPKEFLMKSNWQKNSLDLSNLKARNWFTEKLTNFQKKFGIDMIRLCCGELEYPITEYNLGGRNPGIFVQNYAKVAASVSKSTDIAVGYKTQSLPLVIKIADRYPNWGKDDGLRSIIPMVLSVGLIGYPFVTIGPIGGKAEETTTVDKELYIRWMQLSVFFPVMEFVTYPWEYDDSDTVQASADILDIRYMLWDNILAIGKESVDTGAPIVRPMWWLAPNDPMTHNLSAQFMLGDIYLVAPVMWSQVKKHEVYLPKGVWREMFGKGIKHELEVGQWITFKVDMKTVVYFECLICKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IE75</accession>
    <name>A0A7D9IE75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004668">
        <property type="protein sequence ID" value="CAB4003583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IE75"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13836" checksum="B0DFEE571ABCEBE2" modified="2020-12-02" version="1">MSDNWFENMDNGEITGLISVDIRKAFDSIDHKILLRKMQDQFGVQDFELKWFQSYLTKRSQVCVVDGHTSLAKEIVCGVPQGSILGPLMFLLYINDLPECLKNTTPGMYADDTQIYTSSASF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IEA7</accession>
    <name>A0A7D9IEA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Poly [ADP-ribose] polymerase 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A034145</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004802">
        <property type="protein sequence ID" value="CAB4004074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IEA7"/>
    <dbReference type="OrthoDB" id="9975606at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010629">
        <property type="term" value="P:negative regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01439">
        <property type="entry name" value="TCCD_inducible_PARP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.228.10:FF:000008">
        <property type="entry name" value="Poly [ADP-ribose] polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052056">
        <property type="entry name" value="Mono-ARTD/PARP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012317">
        <property type="entry name" value="Poly(ADP-ribose)pol_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453">
        <property type="entry name" value="PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453:SF67">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00644">
        <property type="entry name" value="PARP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51059">
        <property type="entry name" value="PARP_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4004074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="29473" checksum="CE06D2D6B2539474" modified="2020-12-02" version="1">MPLIGTGKHMFPEDVVLRVMREEFEKFSSMNLPGTLKEIKLVRYGQRMKRTTVPAQPVNGSELSLPSNWTLQPENQLVKLVRIATSSQEYLEVFNHFVARGGNASQLRKVERIQNPQLYSRYLAFKKSMRGEVNEMRLFHGTDAANIDSINAHNFSRSFAGVNGVAYGNGVYFARDASYSMGYANRQLSDALPKMYMAKVLVGDYTKGKKGMKAPPLKNDPHNPGLRYDSVVDHRRNPSMYVIFQDNQYYPEYLLTMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJK3</accession>
    <name>A0A7D9IJK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A038617</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005721">
        <property type="protein sequence ID" value="CAB4007183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJK3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="83"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4007183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="21194" checksum="FB092696FDA02674" modified="2020-12-02" version="1">MSKRQQPSRGSMQEFAKSAQNTPNKVRNSENKIPKTSKKAMTSENPEEISKIDELYTMMKSVMAKLEMLDLINERILSVEQNVKSLTKSIEFAHTEVADLKEEMKQRKRTEAKILKENLPKRQETEANKDWDLRTVSRRNREIATEIIPRDEKSKSGKKQRERLVRDKLFINNVEFILDNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRP7</accession>
    <name>A0A7D9IRP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038349</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008203">
        <property type="protein sequence ID" value="CAB4014217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRP7"/>
    <dbReference type="OrthoDB" id="115183at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="130"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4014217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="18054" checksum="D0C02D4A663A0EAE" modified="2020-12-02" version="1">MLARIEPHYWWPKMKAEVENYAKTCQRCAATLAQGHRKAPIHQRPKEEKPFALIEVDLKGPLSRTKEGFDNIVVITDSLRRNNGTKEEIVHYNYLKSYQIRPVKKPKSRNPPKKNGVGHPAMGTSEDSESDSRVEEMQPERRYPERIRTPPEKYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IYE7</accession>
    <name>A0A7D9IYE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008323</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009090">
        <property type="protein sequence ID" value="CAB4016372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IYE7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="194" mass="20898" checksum="F69D97DB2A43DDF1" modified="2020-12-02" version="1" fragment="single">MVTDFSRKITEKAGKQLEVVVSNPAAAARKQGKSRHVSSSSEESDGSLAEMSVTPKPRSKRVQHCEKSPKESGHEAEGPSKNNADFASLGQTNITEDCLERSMVIDPIPPLEVEEMEAQSAPVTELPTVSFSVSGADIHRNFVAESTEDPVSPNDPQCDVRPPQDIPLPEEDAATNPHSLEDAATLWQALDNAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J7D7</accession>
    <name>A0A7D9J7D7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005796</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012629">
        <property type="protein sequence ID" value="CAB4023691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J7D7"/>
    <dbReference type="OrthoDB" id="5990438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19879" checksum="3AB33570EA353BF0" modified="2020-12-02" version="1">MSPESWKEYFKLQEAASPGPEVAERSLRSQRCSYCGKDCCAQCKCVVYCAKNCQKRHWNDHRNNCKTLRDLTWACQNKTRSNNKTFTSHLTPSEHAKIAKLVGRRCTVKCSLNELESTVLWDMGVQVSIVSKEMMGKHFPKNVIKNISELINGELDLTAANGTRIAYSGWTEIEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J925</accession>
    <name>A0A7D9J925_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013057">
        <property type="protein sequence ID" value="CAB4024476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J925"/>
    <dbReference type="OrthoDB" id="411871at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19881" checksum="D6C9A5CF549DFE7E" modified="2020-12-02" version="1" fragment="single">MTAGVPQGSIFGTLLFNMFMNDLAYVVNQSELSAYADDTQIFHADQDPAKVQETINSDLANVDKWYAENGMKRNYTKYQAIVMEKSAETKPEFSCENTVIKNSDVLELLGVTVNEKLKFGMHVNKVCRKVSQQVAVLKRMRNMLPFETRLSTYTSAQRDPAPLGQDLAKAGLRCASGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHU8</accession>
    <name>A0A7D9JHU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Laccase-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A051571</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multicopper oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016592">
        <property type="protein sequence ID" value="CAB4030051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHU8"/>
    <dbReference type="OrthoDB" id="2121828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033467">
        <property type="entry name" value="Tesmin/TSO1-like_CXC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF394">
        <property type="entry name" value="FI03373P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01114">
        <property type="entry name" value="CXC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0186">Copper</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4030051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="917" mass="103422" checksum="1BC108158E06ECEB" modified="2020-12-02" version="1">MLCHALHASTNYPSVIIKSPDTDVFFIALNASSVIPSNVYFETVNQKNLRIISLDKVRLHYGPQWCSAFVGLHSFTGCDSISSFYGKGKATALKVARSKDEHANTFANLGVYIPSPAELIDELVKYVCHLYGYENESDVNLVRYHAFKSGKFEEELLPPNTNSLRMHINRAAYQCHIWRNATLPHFNTGNFTDHGWGIDGDGVVCVKWMNIPPAPASILELVNCKCTKGCGNNRCSCRKSSLKCTELCKCHDCQNSDANDESDDSDSYDCSQSNMWSLLLLAVPCLAVLPTDPPPKECFAEAATKYITCQHIIGRPAACHCTGVEPACYIKMILSKTVTKLNKTLFLINGTYPGPTIIVRYRGVVAIDVYNTMDEDTSIHFHGMRQRSVPWIDGVGNITQYPIPAHGKFRYIFRAQPQGTHWYHSHMRYQRDSGLFGALIVHEPEASFPFFPETFEDQPERKTVAIVDTMINPQTSLMGRTSVLPRYCLPDGSGIPVQFDHIRFQMNGQRLPRSAVFVGLNTQIEFYVVGGTNYRFRIISATKENIFVISIDHHKMYVMATDGYIVEPFETDYLVVHVSERYDFILKAKEDVPSGSKFPIRIQSLAVLCNDSSKLAGESYGFLVYKNRFEPMRPALPERLIVQNGRCNDKYNPCKVLNCPFEKMPKDYSNQGSYMMCFNVLVLHLRIPTPQGEYPSSVVKPEDEFFFNFHQTKDGLINGIKFDFPEEPILLSTDIKNECAYPVKCEKVGQRYCRHTVYLNDYGSSTRFVLSSLRLPVRITHPIHMHGHSYFIAKIGYPEYDESGRITVPNKDLKMPSCGHPTWSDGTPGGIVVDSTTVRKDTVIVPAGGYVVIHLLQNNPGWWFMHCHIDYHLNHGMAIAIGENPIAASTPPGPLHHATDEFCFTLRTFLFKENING</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMD7</accession>
    <name>A0A7D9JMD7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine- kinase Fer isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058476</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018550">
        <property type="protein sequence ID" value="CAB4032617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMD7"/>
    <dbReference type="OrthoDB" id="29302at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007169">
        <property type="term" value="P:cell surface receptor protein tyrosine kinase signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050122">
        <property type="entry name" value="RTK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416:SF611">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE TRANSMEMBRANE RECEPTOR ROR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00109">
        <property type="entry name" value="TYRKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="438" mass="49672" checksum="F6F2CD2C8294D9FC" modified="2020-12-02" version="1">MRRVHPDHMIKAHDGRENGSNDLKDDDDEPEVSISESGEQTVADDNGEIATEIDPPIYLCIEKIKRVKTIKSLGLMLDETLSWNEQMNAITTKVNRAIIDQVLTGEQGCRGVFRGWIDNRSNPTKDPLVTTNLEKLCQRAVFVAPSYSFEPFVTDNCKGDEKSFIERLSIFHVSSTYKVKVLQIVLRSKLCMRQQQVSTYDVVMNGKKCLLKLHQHTREDVLKTDLLKSVPLRKEIEIVRVLNAAAEPCPYIVRLLGSSIEAPMHLIIERTPKNDLLTYLRGFVNAPETKEMFQFAVDVCKAMIYLGEQNLIHRDLCAKNCFVFMENGILLTKLGDFHLASLSYPGPKSPTGRQSSITRKVNDISNEFAVRWMAIEVFQFGEFRTASDVWSFGVLLSEIFTFGCKPYVNMPSGLSLERDEEVREFVSTLMSFGNKLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JTY1</accession>
    <name>A0A7D9JTY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036077</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021488">
        <property type="protein sequence ID" value="CAB4035906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JTY1"/>
    <dbReference type="OrthoDB" id="5985606at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="182"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="244"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="456"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="182"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="699" mass="77437" checksum="26D7B45E9E89569D" modified="2020-12-02" version="1">MVVVECSVPQCDFKTNDVSEALAIALLSNHGLAHQNTVPAVSTQPAPTFQGPKLERPKIDVGVSIEDWNVFVRRWEVFRTGSGINDTSAPYQLFQCAGTDLARVRGKAETCAFTAECECGKDVDYTDNVIRDVLLNGLSDPDIRREILGTPDILKKPVNDVIALVENKEMARNALPSSTLSAVSSFQRQKNPTTTTATTPSQVDQTKEATCPDCKHTFKVFTEGARGWNTKPHQLCINCYRTRRRKKRQPRLPHDNKPSLQAIEQDPISQVAVFQTAQTDRHRRHHTRASTPHGNINKALATRLDHHIFSKGEWKRARLLDHPRVKVTISVAKSADTRITSPSHASGRDTVVSAVADTGAQSDLWSLADFLACGFSRDELRPVSLSLSAANRSPISIEGAFFAKITSTPHNGNVMSCHSMVYVSSSVQAMYLSYETLLNLGLLANDFPSMDNVGTPSERTQIADSDASPDPASINAARSLNNGCNAPNTPHDPCSCPQREVAPPSPPVLPFPCTPENNDRMKAWLLARYSSSTFNTCPHRALPCMEGPSIEMHVDATATPKACHTPANIPLHWQQQVHDDLLRDEALGVIERVPYGEPVKWCHRMVVTRKHDGSPRRTVDLSPLNKFCKRETFAMESPSHLARRIPKETWKTVTDAWNGYHSVPLRESSYHLHHAIWPLALPESTPGFPIIRGWIQSPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K451</accession>
    <name>A0A7D9K451_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">E3 ubiquitin-protein ligase</fullName>
            <ecNumber evidence="8">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A084304</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the Deltex family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020027787">
        <property type="protein sequence ID" value="CAB4041116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K451"/>
    <dbReference type="OrthoDB" id="2449614at2759"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007219">
        <property type="term" value="P:Notch signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09633">
        <property type="entry name" value="Deltex_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02907">
        <property type="entry name" value="Macro_Af1521_BAL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.390.130:FF:000001">
        <property type="entry name" value="Probable E3 ubiquitin-protein ligase DTX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="entry name" value="Leucine Aminopeptidase, subunit E, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039396">
        <property type="entry name" value="Deltex_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039399">
        <property type="entry name" value="Deltex_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039398">
        <property type="entry name" value="Deltex_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12622">
        <property type="entry name" value="DELTEX-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18102">
        <property type="entry name" value="DTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 8" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 8" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="159"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="538"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="621"/>
            <end position="640"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="174"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="538"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="558"/>
            <end position="574"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="582"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="625"/>
            <end position="640"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="825"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU367105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4041116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="825" mass="91142" checksum="CDF6597D494242D6" modified="2020-12-02" version="1" fragment="single">GPLKIDGTELSVEQWTASTHASPERVSNAWLADGSVLHNSTHRKYRSRNENKWLRKGARQKKINTCRGLTPGQATTLKSPFNETKVKLNDDLVKKMHKKAELKEIVEKGEVKLDTKGGYLTGTWNAIHAVGQRLISILSGSDQTENNYDTANNFTFSSTINDQPGASPEAIDPSTVTDQPAGTLSTPQSKQPDESFTVSLLFLRYIMAYHYEVFLKLESVCKEISFEVKSKTERNLKLTPREDVDPNKFSKAVNKFIDFYQVQNQKMLQQDIAKLPKDKMDVLSEARTKFSVVIDSAQELDKITIYGEKDNVEEAYRFFQSKVGVLNPGPGSSSSSKGKTANVALSETFSSDLSENLKLVVYQGDLTKENVDAIVNPANDHLQHGGGAAGAIVKAGGRSIQDESDDIMRKRGKRPLQPGEVELTAGGRLPCKFVVHAVGPVWNRHPPNTAMQLLANAVFNSLCLACRNGARSISIPAIGSGLYQVPVDVCARVLFETVVHFASKADKSSSLEEIHFVNIDSSTNRKFVQEMEKRFHGSLKREKVETSLSHNTKEQERQTQIGQQRMAFTTTKSETNSDRGRTTNVTHRGSNHNNHIGDNKGTGARPPDDKPLLLSYAGAAAGKNTDTDHDSKPGADNKTSKYDECSICLSGFTKKKSLDKCGHSFCTKCIDKAFEVKKQCPICSMVYGPLTGNQPKGNMYDSFQSTSLPGFKSCGTIVISYRFPSGIQCQDHPHPGKPYTGTSRTAYLPDNKEGRKVLKLLQKAFQQKLTFTIGRSTTTGRDDCVTWNDIHHKTSEYGGSTGYGYPDPDYLKRVKDELAAKGIRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KFE4</accession>
    <name>A0A7D9KFE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063772</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033484">
        <property type="protein sequence ID" value="CAB4043903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KFE4"/>
    <dbReference type="OrthoDB" id="10068383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="40803" checksum="BCD73C3493D336FD" modified="2020-12-02" version="1" fragment="single">MAFSAPFSAPQMDWETNDSILAFGKFKQKCELMFKSILKDAEGEEQVSYILLWVGEQGLDIYNSWTFEDVKDQKDPAKILDRFMEHLEPRTNHRIHRYTLQSMRQDPGESIDNFIAKIKNIAAKCKFNGNEESEDRLLDQLIWGTNDPEVQKSLIGRDEKLTLNTAIDIARSYEATKRQMNSLSNPNKGNPQRIDSITRKKLNADNKNHNNIIQCRNCGKTHKLPHKGNCPAHGTTCRNCGKLNHWQLVCKSPKSQHRSKSPCRKNKKAINSLEKQNENDPYADIPTIGTIEINSVESHNNTTSEEIFTTLRVNRKNNGDINLKCKVDTGAQSNVLPIHLFRVLYPELINAEGMPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXG7</accession>
    <name>A0A7D9KXG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044082</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011495">
        <property type="protein sequence ID" value="CAB4021550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXG7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14027" checksum="E3E3BBE37696142D" modified="2020-12-02" version="1">MSKKTLLAMLIKCGEGECGDTVVKKPNAAIPHSFINIIHNLQVSANITLEDAVKQVRNNLVPVDYTPYPFKKDTEKYFLDMLRSLVATCIYRDKIKLEGTKAGPPHLDPLLDPLLDLSEYKINSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KZ53</accession>
    <name>A0A7D9KZ53_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like RNase H domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012445">
        <property type="protein sequence ID" value="CAB4023332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KZ53"/>
    <dbReference type="OrthoDB" id="5987487at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="354"/>
            <end position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="795" mass="92196" checksum="CDAFF0AFEE7FD451" modified="2020-12-02" version="1">MIINQVFPSAVRTQKRVNGKRVWHYPLSRVGKIVDIESDRIEWENLGNLTLDFGWHLSNRNDNFVEWIKIPSQDLCNGNRVLKEVKIFKDWTFVVRVNNRAIEKETICIQEMGPSRKMLIYLFRVLDDFDICKGFPVDSKIITRDIKGNVNGITEQWHIPANGNGAVEEGDRFVLFHRSTACNGLHQANYKRSSQALCDHCTLLKRNYSVLPQSNEFTELKRESYMSEAELKEKIRREQARRRSAERRTKYLQNKIGKEMKTFEDEDHEDILFMFQKVKKDSLSDDMKIFFESQEKALAQMNQKGNRWHPKIIRLCLSIWNRSPEAYRELGESGMLRLPSGRLLQMYKNSCTQNPGLNESVGKWMTQEADKKNIGPAGREGGIILDEMSIQEDLQMKSNHGKWKLVGIVSLGEENRSMQAIIKGDETVEVATHVLQFVFLGNNGFRFPFAHFPTTEADSATIYTNFWKAVGWLRRFGFQANYSCFDGGEANRNFVKMHFHGKDPEAARFTTINPYTRKPMVFMLDPSHNIKKLRNNLEKSRPNGVRLLSYGNNTIEWSHLYAAYRWDQSTNSLKLHERLTEVHFNLGYATRMRNHLAEDVLSMNMLNLMKAYKKYIQQTTGNNADYLDRTIEFLTMTSKIIQTFSDKRPVSSLADHRLAQNQEVLDYLKRWETDAAEHVELKKCEQGKRLLSHKLRFDLASMIIGFYEICKIAFIRFPGSTISPFRTNSDLVENIFCQERGHNGQNSNPTYSQYGPTMNSIILGQTTTTNRSNTGSVENLAFFKRDVPLKHKTPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L939</accession>
    <name>A0A7D9L939_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">EIF-2-alpha kinase GCN2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A046502</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015368">
        <property type="protein sequence ID" value="CAB4028277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L939"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004694">
        <property type="term" value="F:eukaryotic translation initiation factor 2alpha kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990625">
        <property type="term" value="P:negative regulation of cytoplasmic translational initiation in response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050339">
        <property type="entry name" value="CC_SR_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11042:SF136">
        <property type="entry name" value="EIF-2-ALPHA KINASE GCN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11042">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="234"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="234"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="245"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4028277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="461" mass="52376" checksum="700772F2FC4440DA" modified="2020-12-02" version="1">MDSMGKNDINVVPDSGISLSWNSAAEAAFENFNITTAIGNNLEWQGTYLGEGAFGKVIKVKHRTDNHYYAVKLMSCIPGIREKYQERELKLLTEQVSSPTTNMNIVKYYDSWKCTVTTLPYLCIQMELCDISLETLLQTQKGVVDDSLFYWNLFPQILRGLEYLHNTISWVHRDIYPPNILLAIPEHVDQPIHLRVVKIADFGLARKLGESSLIVSDPPEEVLSAVGNKLYRAPEMKPKKKPDSDTGTENPDPDNSTKLIYDFKVDMYSAGLVLYRMCCYFENYKAITSELQRIQDGGFFDKDKLSNQHDILYQLLDGLLKQNPEERLSALHALACFEMSSSPLLQDTQLSASSKRLPPDFFSETDGPKTPKVLARKSSSSRYVRVHSNHASSYDALLTCLIEDLEINDIECFDILLEESDCRQKIRNSRDWEILLSSANERNCAVKLVVEPKSEEEPDLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZ67</accession>
    <name>A0A7D9LZ67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001368</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027643">
        <property type="protein sequence ID" value="CAB4041018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZ67"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9091" checksum="13721A81D081CC86" modified="2020-12-02" version="1" fragment="single">MLGDQPNESPESPQAATSSTTQQSVIVPRSGLPPFPPFDPLSNPTNTGLRWRKWLRRFEKLLISLRETDPTVKRDLLLTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MET4</accession>
    <name>A0A7D9MET4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037454">
        <property type="protein sequence ID" value="CAB4045055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MET4"/>
    <dbReference type="OrthoDB" id="5989338at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="27674" checksum="EAAFFA7DBF594ACD" modified="2020-12-02" version="1" fragment="single">MKCIPDVYCPKKVHKKCCTNRSAKDLTFYICGYIADIFYLSGSTHDLYAQQVYKNVNHLKNVCQSALSTDIETNPGPLFYIDPSKTISAPYSQGNQVIFGETAGQQCLAMCLCALICNKRQNICSPQDLVNIMNIGNELYSNLSCLAQQSFLLFTELPSQLTVFDTDYIFEHSESYSGNVIGDCSIEGYQYCVPFHRSFELLLAENYSAFILTIDSNAVCIFYTNDASITFLTLIQETFMAEVIHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MFU9</accession>
    <name>A0A7D9MFU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023388</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020047471">
        <property type="protein sequence ID" value="CAB4046209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MFU9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11543" checksum="12AA73BB39B7BE62" modified="2020-12-02" version="1" fragment="single">EADGGDDGEITRSRYATFCEDRNERNQHQGGENSLFQSPRKFGPCGRSLHERRKNRMAPSNDRRSDGESGIHRRTNRCPLNNTDADRSVTKTKTRKTFSSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL48</accession>
    <name>A0A6S7FL48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A017756</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell projection</location>
            <location evidence="1">Cilium</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000004">
        <property type="protein sequence ID" value="CAB3976599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL48"/>
    <dbReference type="OrthoDB" id="535167at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14885:SF1">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14885">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 43-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25828">
        <property type="entry name" value="CC_Cfap43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3976599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="330" mass="38591" checksum="729A0CEB1C9AD5BD" modified="2020-12-02" version="1">MLKQSYTGMQSLEKAMAELDHPGHMPEGLDEHVWQRLVQARRLKVESEQKVKTKALILADMNAFLQRRFVEDESLRAEIERLFKELQNLRDEKMKFTMDLEVQLLLKQGQVEVPPDSFITDYSDSTLVHRSVIEDLNATIRSLGDAKINIMVESKDFRKGIHALEWEHKKMKMQIEDLEARARDIQLLRVTKDLQQYLGEVDQQAIQQKEVATLEQTLQLYQKTHARNVEDRHRVIRDLKKAIRKKEIENERLDIDLEEMAITVAERKNVSNPDAENQAEANSERRLKNIVARRRLVDLAKAQAQEVAILRAEVERLRMRTFPALVQVDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL85</accession>
    <name>A0A6S7FL85_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Ubiquitin-conjugating enzyme E2 H</fullName>
            <ecNumber evidence="8">2.3.2.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">(E3-independent) E2 ubiquitin-conjugating enzyme H</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">E2 ubiquitin-conjugating enzyme H</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">Ubiquitin carrier protein H</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Ubiquitin-protein ligase H</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A019744</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. E2 ubiquitin conjugating enzyme that transfers ubiquitin to MAEA, a core component of the CTLH E3 ubiquitin-protein ligase complex. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Capable, in vitro, to ubiquitinate histone H2A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E1 ubiquitin-activating enzyme]-L-cysteine + N(6)-monoubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.24"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">Interacts with MAEA and WDR26, components of the CTLH complex that contains GID4, RANBP9 and/or RANBP10, MKLN1, MAEA, RMND5A (or alternatively its paralog RMND5B), GID8, ARMC8, WDR26 and YPEL5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the ubiquitin-conjugating enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.24" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020000265">
        <property type="protein sequence ID" value="CAB3980168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL85"/>
    <dbReference type="OrthoDB" id="269518at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061631">
        <property type="term" value="F:ubiquitin conjugating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd23797">
        <property type="entry name" value="UBCc_UBE2H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.110.10:FF:000078">
        <property type="entry name" value="ubiquitin-conjugating enzyme E2 H isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.110.10">
        <property type="entry name" value="Ubiquitin Conjugating Enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000608">
        <property type="entry name" value="UBC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023313">
        <property type="entry name" value="UBQ-conjugating_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24068">
        <property type="entry name" value="UBIQUITIN-CONJUGATING ENZYME E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00179">
        <property type="entry name" value="UQ_con"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00212">
        <property type="entry name" value="UBCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00183">
        <property type="entry name" value="UBC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50127">
        <property type="entry name" value="UBC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0007">Acetylation</keyword>
    <keyword evidence="4 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0832">Ubl conjugation</keyword>
    <keyword evidence="3 16" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="UBC core" evidence="18">
        <location>
            <begin position="1"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="154"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="17">
        <location>
            <begin position="160"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="17">
        <location>
            <begin position="172"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00035845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00039076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00060202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00063081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00072436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00076312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00077502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00078369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00082119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU362109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB3980168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20521" checksum="C229054AA000AFCF" modified="2020-12-02" version="1">MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFFGPTGTLYEGGVWKVRVDLPDKYPFKSPSIGFLNKIYHPNIDEASGTVCLDVINQAWTALYDLSNIFESFLPQLLAYPNPVDPLNGDAAALYLHKPEQYKDRIKDYIKKYATEEALKEQDEMSSSSEESSISDFSEDEAQDMEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FMU4</accession>
    <name>A0A6S7FMU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062399</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000039">
        <property type="protein sequence ID" value="CAB3977249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FMU4"/>
    <dbReference type="OrthoDB" id="6150568at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599:SF3">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="12"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="512" mass="58330" checksum="2D6DC1227E597E24" modified="2020-12-02" version="1">MYQYAYTIYLFYSDEDPADEEPADEDDDPDWEGDGDLGEGSGETGRPPAKRRADSLGGTSGNRGRGGRARGGRARGGRGGRARSGGTANTSSKSYNDADTKNDLPPFQPNRPPGIHFGRQVLRGSMTTALEFFRLFFTSEMIKSVVAHTNSYAYMKLVAGGYTTYTTWEGAWEQTTDDEINHLIALLIYFGLVRVDTTVEKYWSTKTLYHGLWARKILSRTRYKALMAFLHVVDPADEQPGDKLGKLVQDLFLHATPSSGTCRTNREGFPKSLRNVKVWAKKLERGSMRWERDSNVLAIQWVDNKAVSLLTSIDSANEKEVARRRMKVGDVFERVDVDQPYAFYRYNQYMNAVDRSDQILACHNVYRKCYRWWKTLFYHLIDMAVVNGFLLFQKHRATDPGNPALQRISTYNIVNFREEIIRQICGLEEYDRPPVYEAVQAVPRHDLFCTLHIPKTAESRKHCVVCYGKGKGQKHVTTYCSAPQCNNKHMHVGAGYDCFEVWHSSDYTGKRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FV31</accession>
    <name>A0A6S7FV31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050181</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000608">
        <property type="protein sequence ID" value="CAB3983405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FV31"/>
    <dbReference type="OrthoDB" id="5989491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11456" checksum="2D1503FE9FABFB82" modified="2020-12-02" version="1">MVIGWFIEYVKMLQKDENDAVTDDTATGEGSELQSAPSLKELVLFIFGQPVLHMEIKVKFMNGYFPDPDSCFGRVSLPLMHTNYEHFCKAMNVAIDSQHVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FY14</accession>
    <name>A0A6S7FY14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000346">
        <property type="protein sequence ID" value="CAB3981022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FY14"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12181" checksum="2D183C83FA9AD29C" modified="2020-12-02" version="1">MAVTGTGVFDGIIQAWRTFPKDDMLRKLSYENSVEELTSLKFDLLEERLSSDICELLTFLDTKVVTTEKAGREITDLVNKVKNLTATVIEQKKEIDQLKSESHNCKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZ10</accession>
    <name>A0A6S7FZ10_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">E3 ubiquitin-protein ligase ZNRF1</fullName>
            <ecNumber evidence="6">2.3.2.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18">RING-type E3 ubiquitin transferase ZNRF1</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="19">Zinc/RING finger protein 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">PACLA_8A057255</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="22" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="22">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="24">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Endosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Lysosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020000550">
        <property type="protein sequence ID" value="CAB3982887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZ10"/>
    <dbReference type="OrthoDB" id="10057496at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005764">
        <property type="term" value="C:lysosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070936">
        <property type="term" value="P:protein K48-linked ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000235">
        <property type="entry name" value="E3 ubiquitin-protein ligase ZNRF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051878">
        <property type="entry name" value="ZNRF_ubiq-protein_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46661">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46661:SF4">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0967">Endosome</keyword>
    <keyword evidence="22" id="KW-0436">Ligase</keyword>
    <keyword evidence="16" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="15" id="KW-0458">Lysosome</keyword>
    <keyword evidence="14" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0519">Myristate</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="12" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <keyword evidence="11" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RING-type" evidence="21">
        <location>
            <begin position="132"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="20">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="20">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="20">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00040227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00042177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00042305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="CAB3982887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="19331" checksum="9014D6BF6FD7798B" modified="2020-12-02" version="1">MGTKLSSPNRRNHPSSITANDIQNRGEINVSNRNRSRSLEIGEPQSRSIPTRRLQALEISSNENSSGGNSNGVSMLQARSLPGQLFALHGLRCPVCSKFVQSEDVELHFVLCLTKPRLSYNADILTQDAGECVICLEDLVAGEKIARLPCLCIYHKKCIDIWFKKNRSCPEHPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4R9</accession>
    <name>A0A6S7G4R9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069733</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000875">
        <property type="protein sequence ID" value="CAB3985463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4R9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="28957" checksum="DE73806527A5F6E0" modified="2020-12-02" version="1">MSDKIEALIKKISKQPRNDIVAELIGKGDIDSLTQFRLKLVEKGRQFETFPKGDPYIRRKPKGCSKFSTLEEHLANDICEIHEYFNTGVVTMGLKDMFKNENGSSNLSVVSEAGVVNTIHWCSDAEAGAEKPLSQVTPSQADGLSTPGEARKCWKSRDLTQSLTDTFCQVNSNSHPVTKTKHSDEKMSCKDILVLVKNMRAELLAVREECAESVKRFENKVNELNSVLEARDSKIQTLETEISSLKGNQKSFTSSLKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMV8</accession>
    <name>A0A6S7GMV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017987</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002155">
        <property type="protein sequence ID" value="CAB3992943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMV8"/>
    <dbReference type="OrthoDB" id="9908684at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="359" mass="40562" checksum="F5F42BAE0D89C0F0" modified="2020-12-02" version="1">MKPFQLQSPKELTVSSSEECIVDNEITKLMKAVIEPTNPGSGEFISTIFIRPKKDGTFRVILNLKRLNEFVEYHHFKMDTIYTAIHLMKQGCFMASIDLQDAYYTVPVCPNDRKYLKFSWQGQLYHYTCLPNGLASAPRICTKILKPVYALLQNKGHISFGYIDDSYSQHDNFDGCKTNVHDTTTMFDSLGFIPHQTKSVQQQDMTVSLTSERATKLQTACINWLAKRRPLIQEGAHVIGLMVASFPAVTFAQLFYWALERDKTQALKLHKGNYAANMTLSQDALANLQWWISNIETSSKPVLASQPDMVIHSGVPIVMESMQEVHGGETEAKAHINVLETIAAFLALQSFLFLTILQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GPQ6</accession>
    <name>A0A6S7GPQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tol2 transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018264</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001039">
        <property type="protein sequence ID" value="CAB3986591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GPQ6"/>
    <dbReference type="OrthoDB" id="10057873at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501:SF5">
        <property type="entry name" value="HAT C-TERMINAL DIMERISATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501">
        <property type="entry name" value="TRANSPOSASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="575" mass="64306" checksum="7AAA9E91CEA5E064" modified="2020-12-02" version="1">MSNSVDVVDIDAAVIHPWSYLYSIFEIVNVGSKSARVKCLLSLPLQKVLSSALNSPSNLQKHVERIHPSELKTYKSLTAGMQSSAKRKNGPTQSCETDHPLRKQLKIGENREMLSASNHNKTLSQADIDHMILDFAIDGLLPFRFVSLTSFNRIIKAISPKFNVISESTLKRRYGDLATTISQNIKSILNVSYVATTTDGWSMRGRSFVGVTAHWIDPNTIKRFWAALSCEHLQGSHTYDVLAGALSSIHIKFGNAKKVVSTTTDNASNFVKAFLDEDEEDDTVDEDLIQPVSITATLVNQRSNGRGTNVQLPPHQRCACHSLNLIATKDAQDAELDSQFKKLHRSSSAKATAIWNKSSRSVQTAEAIVEICKQALVKPNQTRWNSWYMAIQRLVKINKDDPRALALLCERIKLPRSILVNIQDKLTYCEPLAEALIAGIDKRFGTMMRDPKLLAASLIHPHFKTDSLIPNELIEAVTLTDDQNERSCPDEFEDLFGRKSKQKGPDPMQQLQHFLSLPVSQSANEILQWSQLKDIFLELNTPMPSSAASERLFSADHRSFYLVGVELMIPTLRTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSD5</accession>
    <name>A0A6S7GSD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger and SCAN domain-containing 22</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041771</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002144">
        <property type="protein sequence ID" value="CAB3992892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSD5"/>
    <dbReference type="OrthoDB" id="6153129at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206:SF1">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206">
        <property type="entry name" value="PROTEIN CBG10425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="553" mass="64766" checksum="AF04C7A6893C39FE" modified="2020-12-02" version="1">MAIEWLEWQAYSRGISIRHEYNNTEKRIGTRRLPVDGFHAESQTVFQFHGCYWHGHNCHLNEGKEVNEKRDKPMKELLEDTQRNSAYITKQGFNLVECWECEWREMKKRNTALQRFIATQLRRPLDKVKTMTTRSIVNAVKNDALFGCVECDIHVPEHLKDKFSEMCPIFKNTEIRREDIGEFMKSYAEENNIMPRPRRSLIGSMIGKKIMLATPLLKWYLEHGLEVTHVYQIVEYTPKPCFKPFGDAVSDARRAGDADPSKAIIADTMKLVGNSSYGKTITNKERHRKVDYCNDDEVSELINSPFYRQMNVIDDDTYEVESAKKKIKLDLPLQVGFFVYQYAKLRMLQFYYDCLDTYLDRSDYEYCEMATDSAYIAISGESVEELVKPGLREAFENDKCNWFPRSDTTEHAKYDRREPGLFKVEWEGDGIVSLCSKTYYCFGERDKYSCKGVNKKNNVINKDKYLDVLLSKRSGSGVNRGFRVLNNTMCTYVQVKNAFSYFYPKRKVLEDEFQGQNKSRTGQTVPQGHFERFRDFRDKKSPVRDIYIRDGSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTJ6</accession>
    <name>A0A6S7GTJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045036</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002254">
        <property type="protein sequence ID" value="CAB3993399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTJ6"/>
    <dbReference type="OrthoDB" id="5986221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="38342" checksum="9CC486D4CC7D8AB4" modified="2020-12-02" version="1">MLLYRIASISGKSYHAEEQERVFNAVTNITQSTSSKQPGHIIGNVFLCIQAEKKLGSYHSDNSVTKQQAHISKLAKSLPPLGNTVVPFFTLASSSSSWQADLERISDFLIVGNEEDVEFFGKNTGVDVRSEGPKLHHFCSSNFKEEEAYLTKCWSMCLEAKIPLPLHVLRVKDQNKDILIRNQTDFLKNADPINITSVEVSDEEAAMSCEHDQFGNKNLEEPMDVDTLLGNTATTAKENVQLINDQNDAQVDQSLASALKEQQWKTTLGSTMAHILGSTKEVIEFDQVREVAKNYCHGKLFLDSYMNKLAVLQTRMSQKKQELDKEVEDWEKNYFMHSKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUW0</accession>
    <name>A0A6S7GUW0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083739</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001307">
        <property type="protein sequence ID" value="CAB3988321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUW0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="451" mass="50801" checksum="DC2190A1E2BBC53C" modified="2020-12-02" version="1">MIGRAAKRARVDDSGAEEVEKHDGGFVTPLQMFATFPHNITFEETRELKLLATPASSPDSDMYTFIHNRQEYGVMRLEDATISAELQVSTNAGGNPGNTFRVAPMTRPLAFGWKTKEIYVNNDLVNTTTTHESEIAYINAFLTETPDGRYDKRDLCLGWYDTAGQFDDTVGFHNGTNVVNVGGRRRANAVNIHARFKCLDKLDLLGHNKRFCPTSFDVKVELTRLPKHKFFTGIDANVTAVKMRYHDLTLTIPMMKPVAQLSAAINELMIQNSEECKFYTTTYRYVGKPLAIGAQNVQVNDIFNGGRPTRFICFQKTQARYNGDNALNFHSMPFPNINHFQVKINEANIPPLITNSKEAYLNLIRVLDKRHSQMPVTYSAYQSDFGIIVVDLTTNRDSYNQVLPNSTAGVVSVDIKYTAALQAAQQLVFIGEFRNQLSIGYKTAVRNKFEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0Q3</accession>
    <name>A0A6S7H0Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046741</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003526">
        <property type="protein sequence ID" value="CAB3999155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0Q3"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="23912" checksum="C1FB49C06B18E6D0" modified="2020-12-02" version="1">MAKVLPIFKNGEKCDLSNYRPISIISAVAKVFGRTVYDQFYSYLTSNNLLSNYQSGFRASYSTVTALLESTNNWCVNIDKGLLNGVIFIDLKKAFDTIDHEILIRKLKCYGVDDNALSWFNSYLNNRKQKCYVNGKLSGSRSISHGVQHGSIIGPLLFLIYINDLPNCLNEGLPRMYADDTNISMQSNNLSELENLMNAEIANLNTWLEANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8P8</accession>
    <name>A0A6S7H8P8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A076140</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004030">
        <property type="protein sequence ID" value="CAB4001214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8P8"/>
    <dbReference type="OrthoDB" id="7763192at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="18"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="486"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="18"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="949"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="949" mass="107669" checksum="8C59F730D2769897" modified="2020-12-02" version="1" fragment="single">MVKENAFPTVNADVCITSSGSSSETNNSHENVNQPTVDSDLDPPVSEMNNYSKESIEAAQLSISVTKEREATPITQATNDNSNIEPNVGKSFVLAPPQRNNIEWLGRLPLIETLNQANQTSFCNTKSRSSSVFKNRDTEEKTLTAITKEHVPKPLSDMQRSKLRIAHLNVRSIKNRNHLIQVRELMKDRNYDILALSESWLNSTVTNAEVEIEGFKLTRLDRLGKTGGGVCVYSKSSIKVKCLKNITGISEFGFHQLWMLIQLRKLRSILLCVTYRPDYCPTSTFHDIFMENYIHALTLGKEIIVVGDLNCDLLKPDSPEAMSLLDFCTSVNQTQLIKEPTRVTETSSSLIDIIMTSNVSLVENHGVALSHISDHYLTYASLKLKMLKPPPSYKCVRSYKNYKPDSFLADLQRIPWYDISIMDDANVMLDHFNERFLHVMETHAPVKTVRIKHRSCPFISTEIRELMQYRNNLLKTARSTKLTTDWEMYRKLRKEVKSKLRDAEREYVRKELEHSHNTNSKWKIIKNCIPRKESTQQVYTKDMKEVANEFNQFFTSVGRRVSEDCTSLIELYNLPAPPTSVSLAVAESQNFSFVPVSCGEVRRTVMAFQSNKAPGHDKVRMSTIKDALPCILPVITDMINRSLQTSVFPSAWKISEVIPLLKEGDHEVANNNRPLSLLPVTSKICERVALNQLTSYTNKKKCLSKHQSDSWRVYDRQVFKAMDSKELTVIVLLDLSKAFDSIDHRKLLTKLKALGLSLGALEWFKSYLTGRTQQVKIGSVVSEPGHITHGVPQGSILGPALFNIYLNDLPTIPNFGDLESYVDDSKLYLSFPIKYVNEVMRNINEDLSKITAWCCHNSLLINPDKTKVLVLGTHKMLQRLPDDFYVTLLEKRITPTISARDLGIQLDSTLSFNEHIANTVSTCIASLCQINRVKHLFDPKILENVISSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HD42</accession>
    <name>A0A6S7HD42_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tectonic-1-3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004731">
        <property type="protein sequence ID" value="CAB4003805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HD42"/>
    <dbReference type="OrthoDB" id="5979418at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040354">
        <property type="entry name" value="TCTN1-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011677">
        <property type="entry name" value="TCTN1-3_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14611:SF2">
        <property type="entry name" value="TECTONIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14611">
        <property type="entry name" value="TECTONIC FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07773">
        <property type="entry name" value="TCTN_DUF1619"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tectonic-1-3" evidence="1">
        <location>
            <begin position="3"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="17141" checksum="35FEBF33B8C02B35" modified="2020-12-02" version="1">MIRLNQTSDCSLLQGMVYAALLGTSPPDYVASFGNSDVQNAADWVKIINDKPANTASGSGGVCSDMVLGMSIEILFANVGYLANPQAKIIGVRFKYEQPQEIVYQCIGQFCQGSGSASQYVEVVSSVSFIDISQPPISDQKSLPEFQSKAPSDFFHPFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HDG6</accession>
    <name>A0A6S7HDG6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Palmitoyltransferase</fullName>
            <ecNumber evidence="7">2.3.1.225</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A019402</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-cysteinyl-[protein] + hexadecanoyl-CoA = S-hexadecanoyl-L-cysteinyl-[protein] + CoA</text>
            <dbReference type="Rhea" id="RHEA:36683"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11032"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57379"/>
            <dbReference type="ChEBI" id="CHEBI:74151"/>
            <dbReference type="EC" id="2.3.1.225"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The DHHC domain is required for palmitoyltransferase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the DHHC palmitoyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.225" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020004047">
        <property type="protein sequence ID" value="CAB4001277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HDG6"/>
    <dbReference type="OrthoDB" id="331948at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019706">
        <property type="term" value="F:protein-cysteine S-palmitoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001594">
        <property type="entry name" value="Palmitoyltrfase_DHHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039859">
        <property type="entry name" value="PFA4/ZDH16/20/ERF2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12246">
        <property type="entry name" value="PALMITOYLTRANSFERASE ZDHHC16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01529">
        <property type="entry name" value="DHHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50216">
        <property type="entry name" value="DHHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="132"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="206"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU079119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4001277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="413" mass="48102" checksum="14836CB519D422C0" modified="2020-12-02" version="1">MAKGSLFHWGPLTALTIIFTLFIASVYSSLVWWQPVKFTGILNICLLVVFLFCILYNFIKAAWVGPGYVPSQWKPENIEHAKLMQFCQICNGSKAPRSHHCRQCNRCVMKMDHHCPWINNCVGHKNHKRFTLFLFFVIIGCSYAAVSLIGCVVEIFSISINSLKDSLRQALNRNSGNFKQTLSEFTQVNPIAYRRMMEEQLVPFGFYHLLGTIFCIGLDIGVTIAVGILLYYQVRDIVRNESAIEAWIVEKAAYRSKNDSKFIYPYDLGRWENFKQVIHFKGDYIGDGFTWPVIDGCDQYTLTVEQLRQKQVKKHFAVDYKSIEGYNGSFCGWRQGFRTCLAFPWSLEKRLRFQKEENLLVTRWRKYWLYGMKIQEEENSVKDPEKGWFPRNCAVRVDDNEGLESNQEKPKDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HE86</accession>
    <name>A0A6S7HE86_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011889</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004074">
        <property type="protein sequence ID" value="CAB4001390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HE86"/>
    <dbReference type="OrthoDB" id="5947013at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="20850" checksum="E88FDBF11838B5D9" modified="2020-12-02" version="1">MHSEFGIVCLLIFTASGSFGQLPSAVSGDDKLREDIKKSFHKGYKAALADSLKEGNGNQKRYDIATLNQAARNRNTLLSSFGGDPYGMGSTMLSKQRLTFGRKKRSIASSQKALKEAYTSGYKAGKEMIAKIQKENSNAEKRFTIENLNKAARHRNVYLDAVGGDPYGGSSVVASQQHINWSHRGKRTVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIG1</accession>
    <name>A0A6S7HIG1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">E3 ubiquitin- ligase NRDP1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A069961</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005040">
        <property type="protein sequence ID" value="CAB4004904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIG1"/>
    <dbReference type="OrthoDB" id="203237at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd16449">
        <property type="entry name" value="RING-HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4004904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="587" mass="66731" checksum="D3C18AE2F838B2FB" modified="2020-12-02" version="1">MASNYPLGYDDERFESIVNQNFHCLICYNVLKDPVMCRRNEHYFCRGCITEHLRRNSHTCPTCADELSVETLQGVPRIVRNYLNELSIRCDHYDRGCRKLVRLQNLKRHVAECGFTPVVCGNQGCGETISKRDRTYHESELCQFRKLKCHNCREIGTTMAGMKMEMANINTNQVNTRKKLANTNTNMANIRTEIANVNTKMDNINIEMVGINTKMANTDTKLENMNTKMANLHANVEAKFQAMNNEVRKIKMSLNEVKDGFDHLKEAVLEKIERESKDRKQEEITRDVSGTASGGRENQHIFVAGGFGRNSVEIFNYRQRLWSLLKPMPESRNSASSFLYNNHVTVAGGYCDAAVDNMIRMNIHPVPDLSHNWSDFAAKLPAKMSAHSSVVYKDSLLVTGGINEDQDLYFDCIHEVQLKPPYTVKLVSKMPEPRVRHSIVLCDSILIVGGTKSWDCEDNLSSVLSYDIKKNECQQLPALPYPVSQMATVKWAENVVIIGGADKDGKALNNVIIYNIKTGNSHMLPPMLHRRTGCMAVVIENAIVVLGGSDERRRILKSVEGFNFERYSWQELPEMKETRYWATAVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNR8</accession>
    <name>A0A6S7HNR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000557</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005855">
        <property type="protein sequence ID" value="CAB4007625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNR8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="155"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="171"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="249"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="298"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="312"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="331" mass="38953" checksum="B3B325FEBD402FEA" modified="2020-12-02" version="1" fragment="single">KNRNNGDAAANQGKAFVFEAEYTEGTTGKRSRNRKQKNKRKQGAGEGLKDDEIMTEKVKDFQQHPQQPPQRMRNDVEELSENPMQSTIDTHHSNRKQERNASAQQREREQTRQPKDHRKPRELKIQYKNQRQLAPAFGQQTHPNMQIHHQQQQQQERHQHQQEQQEKRQQLRQQQQQQQRKQQQQQQKQQKQQGQPTKQQEVSVAHDRITSPKGKQQKQQSQKQQQQKQVKQQEVSVGHNHVNFPKGRQPQQQSDHSNQSPKGRQAVMTSHNERTPTADANDQLVVKVTGEQRVVIPNSPQKSPANNSNEKPRRRRPRRKRKVDNTKDCTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQ93</accession>
    <name>A0A6S7HQ93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Kynurenine--oxoglutarate transaminase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A023615</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid degradation; L-kynurenine degradation; kynurenate from L-kynurenine: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005724">
        <property type="protein sequence ID" value="CAB4007196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQ93"/>
    <dbReference type="OrthoDB" id="2414662at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016212">
        <property type="term" value="F:kynurenine-oxoglutarate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070189">
        <property type="term" value="P:kynurenine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00609">
        <property type="entry name" value="AAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000024">
        <property type="entry name" value="Kynurenine--oxoglutarate transaminase 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.1150.10:FF:000021">
        <property type="entry name" value="Kynurenine--oxoglutarate transaminase 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051326">
        <property type="entry name" value="Kynurenine-oxoglutarate_AT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43807">
        <property type="entry name" value="FI04487P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43807:SF20">
        <property type="entry name" value="FI04487P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class I/classII large" evidence="8">
        <location>
            <begin position="73"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4007196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="456" mass="51215" checksum="B5B2D79FDFCA340F" modified="2020-12-02" version="1">MVPVLRNLRINFAGKTIRSSFCLLRNCRPLGTEIRSISEMASQKDVIEPAKRLSSLGKNVWVEFGKLNAQYKTVNVGQGFPDYKPPDYLIKTLATASESENDLMHQYTRSQGHPRLVKSIASLFSKLHGRDIQAMSEVLITNGAYESLFSAISAFVNEGDEVIIIEPFFDCYVKMVNFIGGVPVGVPLRPSADNWRSSKGWKIDPKELEAAFSPKTKAIIFNTPNNPLGKVFERDEMEMIAGIISKHNAICISDEVYEWLVYPGNDHIRIATLPGMWERTVTISSAGKTFSATGWKIGWSVGPERLISHMASVHANSLYVLPTPTQEAVAIGLEREEKLLGTEESYFHEMTTSLLKKRDYEVKILRDAGFDPVVPDGGYFIMADTSKLGVTFPDGESDEPYDMQFCKWMIKDKGIAAIPPSAFYYQHGKLAEKFIRLCFIKKDSTLKELEDALKKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQU5</accession>
    <name>A0A6S7HQU5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Helitron helicase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006116">
        <property type="protein sequence ID" value="CAB4008415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQU5"/>
    <dbReference type="OrthoDB" id="416437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="45"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="18205" checksum="71BF3CDA1388F5F9" modified="2020-12-02" version="1">MAFPTLFPDCKGDPTNQRLLRDVPLQERIKHLLKFAEIIDGKWVHRFANHPRFSYWAFNMIQRKTILQQSGIFLKQNPGEAHLTIHELREMATSNNANVFMSEVSRYVGNIAGTKAYWNKVREELKAIISNVGTLTLFFTFSSADMHWPELHALFKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HY38</accession>
    <name>A0A6S7HY38_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A070439</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003214">
        <property type="protein sequence ID" value="CAB3997877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HY38"/>
    <dbReference type="OrthoDB" id="5317514at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007229">
        <property type="term" value="P:integrin-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1510">
        <property type="entry name" value="ntegrin, alpha v. Chain A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048285">
        <property type="entry name" value="Integrin_alpha_Ig-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032695">
        <property type="entry name" value="Integrin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20805">
        <property type="entry name" value="Integrin_A_Ig_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69179">
        <property type="entry name" value="Integrin domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0401">Integrin</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="189"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="7">
        <location>
            <begin position="470"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="domain" description="Integrin alpha second immunoglobulin-like" evidence="8">
        <location>
            <begin position="737"/>
            <end position="871"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="154"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="156"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF20805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3997877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="926" mass="104089" checksum="55D2907B8DBA7348" modified="2020-12-02" version="1">MLAVVESSSEITEPQREVISIYKDDFTTPPSRPQYFIEVYRCVKLEVGECSSSGPSTYPVPKTTNEIEIVVPDITNKDSDSSDKKKFYKYVVHNHTSCQCGNLKYRNGRLYKTIAIYNNEVVKNETPNKQTDMLSGSSKNVLLTNDISCKSYDGAKTQQQGQNHPQKLKRSSSEPPVGNSCDQEPNYEILVYIASGKVILAAFLLSLVLFTILIMDFTLCRRKKGFLYALLGCKSDDADHVCQRCSERNRKCIERHAPLRRTKITRPPAPWLKDPTIQDLQEQRNVLQASARRSKDAQAWELFRSARNRLKALIKTAKKKFTQKMLSSKKPKEVWKVIHRILHPEPRRITFHPDKLNSHFTSTAERTIGTDVNDNNNSYDTIRNMIDSLPPDYDNGFHINPVTLGEVVNEIRCLRGDCSTGPDHIPAKMIKIVAEYLGSPLTDIINTCIANRSFPSAWKIARICAIPKVKQITSENDLRPISILPVLSKVYERLIFRQLSKFIDDNKLLSSTISAYRKGQSTTTVMQAIRDDITKAMSRGEVTMMIFADFSKAFDTIRFKNLISKMSKLGFCKDFLTWTLNYVSHRKHFDVEVYAAYMDRAGKMKNSISISFELDADTLVEDAGKKRVRFETSQSPSLLVKDKSVLEGTKTSIFKAKAYLRVDECPDCEDKINPYPDIQLKVVAKVPEGRPAPPTPATSGNAPSLQPYFVLPYSTGEANVKNYTETKIQVKRACDPCKPNLMIKNIGTTKIPVQAKDIKLNVQVGNTADQAFGVSLTVHLPSPLSVRLCGTDDVGCLFGSPKCEFPNNNSRIMICDLGNFAKTTEDYTIKLDTSEASNSLQTYLVTMNVTSKNKEDASLQGDNSLSLELNVASEANIEMRSVSKPEGRLYGGSVRGQYSMTKEDQIGLIVDHTYTVSINVYCVVRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I095</accession>
    <name>A0A6S7I095_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A043432</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mab-21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007383">
        <property type="protein sequence ID" value="CAB4012105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I095"/>
    <dbReference type="OrthoDB" id="269173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1410.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046903">
        <property type="entry name" value="Mab-21-like_nuc_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046906">
        <property type="entry name" value="Mab-21_HhH/H2TH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024810">
        <property type="entry name" value="MAB21L/cGLR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656">
        <property type="entry name" value="CELL FATE DETERMINING PROTEIN MAB21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656:SF42">
        <property type="entry name" value="CYCLIC GMP-AMP SYNTHASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03281">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20266">
        <property type="entry name" value="Mab-21_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01265">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4012105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="478" mass="55656" checksum="6554ABABF2BD9240" modified="2020-12-02" version="1">MAQADTSIVTRLRNAILNICRYPRGCRRMSDIMVKCLIPSAPDKEGKEMYKTVGDLYDEHVFNSANNYFDSQAPFQLEDMLISGSVSEGTHKINLEKETMSDTDFMLILKNIKVTKEDQKKGNLTVKENTAFVNLYLTDEDLIKMWADFLETSSNTSYERSTELSSMKLKERFREKYITYGPIFTPLANEAVEDVDEGPAIAVCSKLPGNAVTNRSKIMHFPVAKFEFILAIKCDGWPLCAQEWLSRPRCWPNQDIVQTIVECGFHIVCKRSSEGDFRLSYSNAETILIQNLSDLQHKTYRAFKSFVGHYKNKWSSNINKIICSYHLKTILLWYCEKSDPRDWTEERIVGHLLSLIDDLISALKERNLPMYFMPKYNLMEQMDGSTEVVEKIVELRFNLHSITEAIICEEPNIMDWVNFFINLLPEYLQPFKKGIEKRNFEAKDFLECFRQYRIYLASIGSMLLERYQQEMMCKGKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I712</accession>
    <name>A0A6S7I712_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger 236 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064898</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007674">
        <property type="protein sequence ID" value="CAB4012897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I712"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="10957" checksum="A6CA2A4D5790D413" modified="2020-12-02" version="1" fragment="single">CHMEIIEPQNLQEHFVEDKSTGKYACNKCNRPFSNFMKLVKHVARQHGNDGIYQCGLCQELESKEPTGVGYVCCVCDVVFDVPRDLEDHMATHDLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHT9</accession>
    <name>A0A6S7IHT9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Actin-binding IPP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A077960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010049">
        <property type="protein sequence ID" value="CAB4018534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHT9"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632:SF3">
        <property type="entry name" value="KELCH-LIKE PROTEIN 32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="38184" checksum="6E4ACA8F50FCF058" modified="2020-12-02" version="1">MFNKQKEMLEAIQNLTTTVNKMRAGNVKAAPTCDPKPQGNIVIIGGQARCAGKHGGVDNKLLDSVEVYSLANRTWSKLAPMKHKRAATTAHFYNGRVMVTGGRCDNNVTRSIEHIQIPGENVPVRAPLDALLAAELPFECYGHKTTILNDYMWLVGGSLNSKKSSCSNAIYTKPLHSTDNFLVKCRMPEPLSYHGLEVVDNELLIIGGTTTGLARDIVKTVLSYNIATSELRKVHPLPFPMADMATVKHGDDVIIIGGVNKENKYLNTVFKYNHKKRVCERLPDMKYKRDECAAVISGNKVFVMGGNNSEEGCLSSVECFDLELHVWHELPSMSEAKFKIAAVLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJT9</accession>
    <name>A0A6S7IJT9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A079483</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009465">
        <property type="protein sequence ID" value="CAB4017249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJT9"/>
    <dbReference type="OrthoDB" id="544608at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00229">
        <property type="entry name" value="SGNH_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34407">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34407:SF1">
        <property type="entry name" value="SGNH HYDROLASE-TYPE ESTERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043355190" evidence="2">
        <location>
            <begin position="23"/>
            <end position="1161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="164"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="429"/>
            <end position="666"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="673"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="170"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="193"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="432"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="457"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="486"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="510"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="523"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="545"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="598"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="612"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="624"/>
            <end position="635"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="645"/>
            <end position="658"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1161" mass="133559" checksum="FF30847D00842FE8" modified="2020-12-02" version="1">MLQSVPARFTIVLLITTNILVAEIEFAQRRNGKVVPVGSLNNQHNSMLLQNRNAASKFITNVNGISEKTFPSDNSKQDLVKSVFLKSNFPTNAKLYPNTNVISGSEKRKFSFLLDSDNSKSIGNKNIAETTKVQHLTTPDLITNTDIKVLQKFVKKLKSSVKTEEKGKASTISTQETSKLASSIGPNNLLRKPSNTQSAGDPYQQSNLQNSYDNREQYSSNQDEIPLNNQNNISPKDKKVSLQQTNNLNNMSKSDVDALLAVAKEWKRLHSKGNENQPHNHELKISNEKNNMQGIVNKQSRERGYSTPKSQRERKLFFPKQNYMKTKQPFNAGNERGRKIKVNRISKLARAKDTTKLTNENTISNDPGLQLKETVDKAIENTTQQLLQFIKLEKHLKGLQNGSFLNESKNDIHYTNTFINLINTMRNSKNLGGDERETKHNNFKENKENDFNSARQIRLEKQTSLNQKEHSSFSQNGKDSQEFKTVQKKIAKERKLKQRLKAKSQDQISHKLRQKQQIRKQKGLGQSQSQQNKSEEQRKKVKTQRKTDQKEKYKSHKQENDLKHAEENHEHKQQKQEQQKQTQHRHEEEQQQQQKLQQQREQERQEKHQKQQRQQQQQQQQQQQHEEREQEKQEQQKQQQQDNQETEKESGKNSEKNRQTNVKNEYNIQADQQEEIKEQEFQSPNTSTTDEQREDYVLKAARHFRMKTMKHLIASLAEDPFDTWIYHQKSFDELGITSSLLKAGIVNLGSSKPMQNAVRKAVRGKNVKLLVVGGSISAGGGLWKDRGNIDGVYHRALAYWWKRTVTPVTNSEMEVTNVAIGGTDSEYFSYCINNFLDSDPDIVFWELSANDYNRFNERNFDPSKPLEQLTRIILQLRSHPALIYVNFFRGDKQNFELGEKCPDSEETEVDVLSRYYDIPSLSWRRMVCNLITKRTFVTQELFGDDGYHPNLLGHAQVAMLLMMYIKGVFESVLADDLGNMKKFNILDENDVDFQDDFQLKIPAFKDPLNPKPSCWTLLTPDYTKVFRNTLNEVNVLKGEGFELRNVTAWDVRTDRIQCLFATKPGAILDLSLNVPVLDYDKNLPLADAQTRTLAIAIHNKFGGAADVQLDELPSKASVATGTGKLKQTRVHIVSEDVRPGVHNLRFRSLSTGFCLTSIMVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IME3</accession>
    <name>A0A6S7IME3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glucose-6-phosphate exchanger SLC37A4 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A060158</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009727">
        <property type="protein sequence ID" value="CAB4017840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IME3"/>
    <dbReference type="OrthoDB" id="3639251at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061513">
        <property type="term" value="F:glucose 6-phosphate:phosphate antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051337">
        <property type="entry name" value="OPA_Antiporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43826">
        <property type="entry name" value="GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43826:SF3">
        <property type="entry name" value="GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4017840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="32159" checksum="B566E81304D9109C" modified="2020-12-02" version="1">MLTVGCNIMAGLCPLITIHLTSNYRWQYAMLFPGLLAISCSPIIYTMIYNSKKEAGLNGANTTDNLTAKRKPAQYSWSKVLFQLLHSPFLWVLLHGDFVTAMLKNGISDWIQLYLIQDKGQSQYTAGLAVTFFEIGGILGSFLAGVVTDKWMHKQDEANNSSARMPAFIWLYTVLLACVHFLRTTVDSSSSTLFIGVLLFGCGMALSGSISLYGLLAMENGPPGFSGTTHAIVALGSSFGGVIAGYPLATFGKLYGWDQTFLLFQIMAAVNFVVHFYTRNINKYMVDFNKIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN06</accession>
    <name>A0A6S7IN06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011004">
        <property type="protein sequence ID" value="CAB4020534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN06"/>
    <dbReference type="OrthoDB" id="5964859at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="557" mass="64531" checksum="1BC9EC5863432CB5" modified="2020-12-02" version="1" fragment="single">DNIRKALQDVLKIHAIFFWSDSTVALSWIRSVCKEYKQFVENRVQEIRRLTDPKDWRYCPTKDNPADIASRGESVSKLAADDKWWYGPTFLLNPKDSWPVQPSHGEESKNTWQELKTSKQTVMAAVVHTDVQPEHSIENLLKPSKYSKLETLLRVTAYVQRFVDNVKRSLKVLHCHTEVMHNGVRETVTQVRSTYWIVRGRQVVKKIIARCLTCKRLEGKSYGVPPAPPLPEYRLDNDVAFSRVGVDYAGPLFVKNIYSKDSKMYKAYIVLYTCASSRAVHLDLAVDATSETFIRSFKRFMSRRGIPGTMISDNGKTFKSKELKEFCTKKKIKWVHIVARSPWWGGFYERLVRSVKRCLKKVLRTARLTYEELLTLLIQIEGVLNSRPLTYLYEDNDEPLTPSHLVLGRRVLTPAKSVSSGISDEVDTAERATRRERHLKTVLTHFWKRWKQEYLTQLREYHRPREARGPSVNKGDVVVIAEDNVKRLNWNIGQIEKLLTGRDGNTRAVVVRTIGKDGKVTTLDRPIQKLYPLELKLEQEHPENFPITFVRHGLKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN14</accession>
    <name>A0A6S7IN14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A034584</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010216">
        <property type="protein sequence ID" value="CAB4018913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN14"/>
    <dbReference type="OrthoDB" id="2373987at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034703">
        <property type="term" value="C:cation channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070679">
        <property type="term" value="F:inositol 1,4,5 trisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015279">
        <property type="term" value="F:store-operated calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051480">
        <property type="term" value="P:regulation of cytosolic calcium ion concentration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002153">
        <property type="entry name" value="TRPC_channel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10117">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10117:SF54">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL-GAMMA PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0407">Ion channel</keyword>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4018913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="21487" checksum="8D33874DB4F7F7B3" modified="2020-12-02" version="1">MVILTGRNKVLSHKYFYRLVSSLFPPYICISELAIRMFCYKKSTSGFVHDIDCQNECCEFERKKPRIDRCKDMLKSYETLTRPESMANQDDPLSHAFKLTREIRNQKKKNIEVKKELRVFYRKSKKFTVDLLDVCENNQEVAVLLNFDEDDLGEKKKIKTLMEAVVAKHKQVFRFDLFIKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN72</accession>
    <name>A0A6S7IN72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010323">
        <property type="protein sequence ID" value="CAB4019156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN72"/>
    <dbReference type="OrthoDB" id="10473615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="198"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="204"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="25632" checksum="D76E6C0688CDE984" modified="2020-12-02" version="1">MCLIGAYNRDCEYDILKDSMFELEKVFDDFCVINEEYELIVSDEKYAEHRVVNGEDIMTYRDNVKRCYEEARSVFVSVKTTIEQKARQQSAGPVKVALKNDICRIHELITVVDESFKLENVNMAALQLDKNDLQSILNIICDNMAKLGSIETQEQVNLIQEEVDAIIRAVYNCIRKINLFLHEQQAFVKSLHIENATFPSETNTPPLRTSTPYSPRRSTPTSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IR71</accession>
    <name>A0A6S7IR71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011957</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010427">
        <property type="protein sequence ID" value="CAB4019370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IR71"/>
    <dbReference type="OrthoDB" id="10048622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="443" mass="50504" checksum="17D21D9078566180" modified="2020-12-02" version="1">MTTKVNFAPLRVLTTGCQPPVRRSLQDKNKMAVPNSTENTLEINLNEVFVGKRRLRYIYQYEPNIVSTILDKNMKYMPLFLGCDVLDECSISSGNLPRFHAKHARRGLATKLNFQSGVRILGIHGTNRGVWFYSVQGLFKIAFEHYTREEQQDCLLKLRDVWERQILDPILMSEINVMFKNCIVEALTSETGEEKITSSTVDEFVNHVSSAIGSYIICKDNPSLQHEMELLKTYLSYINHKENLDSFLNRTINLVKNCLQCLSTFPEKAESLGSPPLSGSYTSYPDDNLTQSSRFPTESQSMNYANRQNLACKKFSKTQSFCYQEAVMLEIAQWLGTEFLKYQPDINERVTLFKQRNMSSIRNLPSAENLVNEVFPLSMLVFLCSWLQVPLSHIENDADTEKSDGRSNLFPVIQLILELANESLVSGVAHVLFSQLVQSDSVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXY3</accession>
    <name>A0A6S7IXY3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048589</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012140">
        <property type="protein sequence ID" value="CAB4022756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXY3"/>
    <dbReference type="OrthoDB" id="8046937at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14658" checksum="A73A155449AD9B68" modified="2020-12-02" version="1">MNLRPAMNLPPEIISENDRYSRKKWRQAQLLANRYWKRWLREYLPSLQKRGKWNQPQRNVQVNDLVLTADDNVPRNTWPMGRIVDVFPGTDGLVRTVDVRAKNSVYRRPVAKICLLEAADKQML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J039</accession>
    <name>A0A6S7J039_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="4">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A007074</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Deltex family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020005654">
        <property type="protein sequence ID" value="CAB4006948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J039"/>
    <dbReference type="OrthoDB" id="527344at2759"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007219">
        <property type="term" value="P:Notch signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd09633">
        <property type="entry name" value="Deltex_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd02907">
        <property type="entry name" value="Macro_Af1521_BAL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.130">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="entry name" value="Leucine Aminopeptidase, subunit E, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039396">
        <property type="entry name" value="Deltex_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039399">
        <property type="entry name" value="Deltex_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039398">
        <property type="entry name" value="Deltex_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027370">
        <property type="entry name" value="Znf-RING_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12622">
        <property type="entry name" value="DELTEX-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18102">
        <property type="entry name" value="DTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13445">
        <property type="entry name" value="zf-RING_UBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043411463" description="RING-type E3 ubiquitin transferase" evidence="10">
        <location>
            <begin position="22"/>
            <end position="1271"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="301"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="672"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="730"/>
            <end position="879"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="305"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="680"/>
            <end position="698"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="742"/>
            <end position="780"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="786"/>
            <end position="853"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="862"/>
            <end position="879"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4006948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1271" mass="140648" checksum="25B3C8E5C76D6246" modified="2020-12-02" version="1">MEARFYLGVLSLVALYGVANGYQCNERPRKLGCFQDSQKNRLMTYAHSVKMKSSDWLGDKWNEHLDKLLCKCSEEAKKRGNLYFGVQHYYECWVGNLNNIDVETRRLHDKSKCWSKNPEPFTCNVNDQVCVGAALTMVIYEVTYSSYVIPDTKEPTIKVMTVPKKGNRPPPFIPVPPHLDSAGLFLARTLHSHSLELIHIENTYKTFTVPGIKKSFTYSHSTQFPSSENDVREKKFSGRLFEKVTGRVSLKTGKILEAELKKACQKTGAQYHEAADEVLISGTWEQVSETRRIIRNVIEEDSTRRGSTSSSDNSESISSKPGRATYDITPPIAKYMKSFHDSDLKNLEQKYQVKISWSKDHTKVHIKTHSSTNYNSDLFNTACDQFAAMYRHFHNNITSLSINVNQDGAGYNKELLKMALNATPRHVSDLILEISADGSTYILWGTGQSLSQAKLWIREQIGVERPRCISPKGPSKDALTHETTNKLKVVVYQGDLTKENADIIVNACNEHLDHAGGVSFAISKAGGLSVQRDSDDYVRKHGALGTGDVAVTKAGFLHCKYIVHAVGPRWKRDGRDGCLKLFRAVFMNVYKAAIKHGAKSMAMPAISSGIYGVPKEVCAQATFSFVDEVDQKLASDPSARPFEIRLVNIDGEIAKTFTQELNKWMLKGRKLQRRHSFSSPKKEKEKPVETKTVDDMHITPRLKASLVAARKPLQNSGKDGRSLDATSMKSRIKHGSGWIGVDSTSTTPTINHGSTPAISTTPTINHGSTPAISTTSTINHGSAPAISTTSSSKVKIITTGAFASSNPNDPTSSTSSATNQSKFNSFGSTTHTSTTGNPSHYGGVVSTSESSSLSKHDKSGSTTTVRYDQNGIGSHSSHSGDNCTICYCPCTDPVSLPKCGHTFCKSCIERAFTYQKKCPICQQVYGACEGDQPDGTMNIQFSHKCVPGYEGYGCYVITYVIPNGRQGIRHPKPGHKYAGTKRQAFLPATKEGEVVLKMLQKAFDMKLIFTVGKSNTTGQEDCVTWNDIHHKTNPSGGPQNFGYPDPDYLRRVKDELKAKGIVPDNDNCYHETHIATFCPVIMQGKECLECPICRYPFTDATSLPKCGHRFCKSCIDKAFTYQKKCPICQQVYGITKGSQPSGTMTVQRSPQNLPGYEGHGCHIITYAIPSGRQDNRHPRPGQAFSGTTRQAYLPANREGDVVLRMLRKAFDNNLTFTVGRSYTTGQDNVVTWNDIHHKTSITGGPQGFGYPDSDYLNRVKDELKAKGIFPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1P8</accession>
    <name>A0A6S7J1P8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BRO family, N-terminal domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A021651</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012747">
        <property type="protein sequence ID" value="CAB4023914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1P8"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014883">
        <property type="entry name" value="VRR_NUC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180:SF2">
        <property type="entry name" value="BRO FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08774">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4023914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="31567" checksum="FB9C3AFD4A2C351B" modified="2020-12-02" version="1">MEKLFRNQKLNVSVRFIKKGEDVLFYAKYVAESLGYADPGKAVRKLVRKQNKVSVYELRKGGDSPPFESDHPQTILLYEPGLYQLIFNSRLPIAEAFQDWVFREVLPSIRKTGSYELPDRRSLRYNQMILINETDLHNIVVSYIRDNHLEAVIVPGLGEYQDTVQKRCDAWKKGYKGGQPDLIIENPMGKYKGFAIEFKSPKGTGITSEKQALWLERLRKIGYATMISDDLVKTCIRINEYFSLEKRVRKVAAKNTVCDVKLYRPKFKSHKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3H4</accession>
    <name>A0A6S7J3H4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nardilysin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013521</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013087">
        <property type="protein sequence ID" value="CAB4024534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3H4"/>
    <dbReference type="OrthoDB" id="4953at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.830.10">
        <property type="entry name" value="Metalloenzyme, LuxS/M16 peptidase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="LuxS/MPP-like metallohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7584" checksum="26069EBC84BE8915" modified="2020-12-02" version="1">MDLFLNDFLRNLPNIDPDVFKNHVSSMMKVKQHEDLNIAEEVDRNWKEVTDETYSFERLNNEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5D3</accession>
    <name>A0A6S7J5D3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A001659</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014689">
        <property type="protein sequence ID" value="CAB4027245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5D3"/>
    <dbReference type="OrthoDB" id="6116165at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00110">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000005">
        <property type="entry name" value="Procollagen C-endopeptidase enhancer 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001791">
        <property type="entry name" value="Laminin_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251:SF30">
        <property type="entry name" value="MEMBRANE FRIZZLED-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251">
        <property type="entry name" value="OVOCHYMASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02210">
        <property type="entry name" value="Laminin_G_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00282">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50025">
        <property type="entry name" value="LAM_G_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="disulfide bond" evidence="3">
        <location>
            <begin position="24"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="3">
        <location>
            <begin position="203"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4027245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="446" mass="48205" checksum="8C906AEC01DE2606" modified="2020-12-02" version="1">MHCNILVILFSLVPFAVGQAINICPTREITASSGQIKSPNYPNKYPSNTDCTLTIKQPLDTNFTFTFAKIDIEGDEDGGDELSCYDSLTISGGSSKDFCGSTTPAPFVPGLNVVKLKMLSDGSVEQTGFDLSFTTVQTPGLPQAVSVCPTRSMTPSPTGRVHSPGFAGNYGANLNCKLTFNMPSNKEFEYFYNIRDIEYINGCTKDKLTVADNSAVGSTCGQSSTSGPAKSLKDGDVSFHFTTDGSGSGSGFLLTYKLIDKPVQTCSCPNGNSYIKRTITKNNIIKRSDDDISLEFKTTQANGLFLFAKGGLRDFILLKLQNGNIVFEVDLGTGNITVRVPSGSLNDNAWHKVVVERRSRSVKVTVDDLSQQIATTKGTFTSLDIKPQNLLGAAMYSLGGPSGIRYDVNFQGCIRNFVIDQMKPVESYLQNDADYTMYGSTTMGTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J651</accession>
    <name>A0A6S7J651_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007633">
        <property type="protein sequence ID" value="CAB4012791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J651"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12761" checksum="68E35D0D301704FC" modified="2020-12-02" version="1" fragment="single">PDKFKIGEDFDLFIKKCNLYFEAVELEDVKKRRLALLFNLIEDAFRLAEPVEFGEGENAYKDWIGKLKSLFERNQTATEKRYNFHRREQESGESVDSYAVSLREASWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCN1</accession>
    <name>A0A6S7JCN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080074</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008443">
        <property type="protein sequence ID" value="CAB4014782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCN1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="53" mass="6442" checksum="58D5CE68D955CCC9" modified="2020-12-02" version="1">MKQRRSKYTVNMKTYNQQILKHCQDESNTSFIKGKEIFTSNRNLRACTERRQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JMQ2</accession>
    <name>A0A6S7JMQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rna-directed dna polymerase from mobile element jockey-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016453</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018574">
        <property type="protein sequence ID" value="CAB4032647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JMQ2"/>
    <dbReference type="OrthoDB" id="276744at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01345">
        <property type="entry name" value="CERVTRCPTASE"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20760" checksum="FD4CC86DFAA4F5C3" modified="2020-12-02" version="1" fragment="single">MAARVGDHISSWEPVTSGVPQGSVLGPLLFILFINDMPQVTKFNTVLFADDSKVIGNAYYPEDIQTDIDCLSRWSEIWQMKFNVEKCGVLHIGERNPQHGYTLDGIQLKSVQKEKDLGVTWSAGKSLFDDHIREGIGKAKRMIAWLIRNVVSRKHEVLAPLYKAFVRPHLEYCVQVWSPVAQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQ69</accession>
    <name>A0A6S7JQ69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019027">
        <property type="protein sequence ID" value="CAB4033188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQ69"/>
    <dbReference type="OrthoDB" id="6380082at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="311" mass="35772" checksum="A3763E0F3272433F" modified="2020-12-02" version="1" fragment="single">WKAWLRRLPELELVSVPRCIQPKKKNGIESEIHTFCDASEEAFAAVVYLRSIYDDGDVRCSFLMAKTKVAPKKALSVARLELQAALLGARLANYVKEAMTRHIDRVFFWTDSKCVIGWIRSTAVWYKPFVAHRVGEIQTLTDPKSWRHVPGRLNVSDCATRSRFDERSELIPVRWFTGPDFLYQGEDNWPKEMPVEELQQHEEIKPSKIFVAKSNPERVPVYADVDLERFSSLSKAQRVAALVHRFFNVCKGKKPKSIVVTVQELRVGLTALVCQCQREAFPDELQSLERTKSVSKRSKLLSFTPYLDENN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSQ4</accession>
    <name>A0A6S7JSQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020227">
        <property type="protein sequence ID" value="CAB4034567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSQ4"/>
    <dbReference type="OrthoDB" id="10066656at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="95" mass="10818" checksum="3BC9115156F16899" modified="2020-12-02" version="1" fragment="single">NAFKTNSGYLQFALVVSTCVAFTPSLFRLYDSNVGTEWTSIDGLYKIYLRCFGAEFKSSLVIWISLVQSGTSSFCFFFLLSVAERTLRQVRDKMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSV0</accession>
    <name>A0A6S7JSV0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">BTB POZ domain-containing 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A007580</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021352">
        <property type="protein sequence ID" value="CAB4035765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSV0"/>
    <dbReference type="OrthoDB" id="6049320at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.820">
        <property type="entry name" value="PHR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012983">
        <property type="entry name" value="PHR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038648">
        <property type="entry name" value="PHR_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08005">
        <property type="entry name" value="PHR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="430" mass="49488" checksum="6DF3A401158225B1" modified="2020-12-02" version="1">MATSQQEVDWQSTKKTVLERSRHMFNNPFMSDIAFSCEGSDKKFFAHKHVLATSSAVFYAMFYGELAEKNSVVHLSDTDEEILEEFLRFLYTDECNLTTENAVFVLYLAKKYIVPSLAQKCFEYFDANFTAENVFSLLQKAIQFDENKLEEKCWDFIDLKTSEAVASDGFSDINQATLVELVKREPLNVREVDLFKAVLKWSEAECSRKGIEANAKNKRAVMGNAIYQIRFVSMTLQDFAQNVPQSGMLTPEEMLLFYGKLGGAERTSKIWNMSETRAKEDILIRCGIFDGHVSCGFSSTVSTWEDTLRISFSKPVKFHGVRLFGKKQKEYNVKLEVSSRIIEKKFHSKHNDFGMSWFNVMLPVPIKVQANFPVHLKATITGYHYVYSARVRKTVETNGITINFEAKQDSSQFDKIIFSENLNEIRHYNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTA1</accession>
    <name>A0A6S7JTA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025294</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021547">
        <property type="protein sequence ID" value="CAB4035955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTA1"/>
    <dbReference type="OrthoDB" id="6753017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="23777" checksum="C7F84D9A317F1729" modified="2020-12-02" version="1">MGRAGIHVEHAIGNADYKICQRACAYALGSPVAVVAEDSDVFQLLVHHTDPAASDVYMVAAKRTVRASTINRRVDVKLSESLLFLHAVSGCDTTSRPHGIGKVGVLKKYAALAESAAMFMASESSKVALETAGERAVLIMYGSQVQLWKGNDLPPEKWGWARSSTGLVPVQMSEPLSQQPQRSSCETSDVIVVADVIHDLAPASRTVFSALQRAANLKALYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZC0</accession>
    <name>A0A6S7JZC0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008502">
        <property type="protein sequence ID" value="CAB4014928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZC0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4014928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="82" mass="9394" checksum="F472F7C1ACE115FF" modified="2020-12-02" version="1" fragment="single">MDPSHFALNRQLYERSQAEDKTELTAGVRSKENKNLKLKRLSIDDNCQPYRKSITFSDDHPVKVTAKFDYIGGSRESISADM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2S4</accession>
    <name>A0A6S7K2S4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A066498</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020024432">
        <property type="protein sequence ID" value="CAB4038647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2S4"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="18"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4038647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13464" checksum="544E416CCD06D535" modified="2020-12-02" version="1">MLGQVTYGWIEKRCKQATGSFDKVFGGKSLILTSYPGQLPPVANKSLYHAKPSNAVGEQGYQAYHMFDKVVKLNANQRVQGMTSEQVQFRDLLLRLRKGDSTVDDWKLRLTRQPSNVTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4J8</accession>
    <name>A0A6S7K4J8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025289">
        <property type="protein sequence ID" value="CAB4039367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4J8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.533.10">
        <property type="entry name" value="Death Domain, Fas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011029">
        <property type="entry name" value="DEATH-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47986">
        <property type="entry name" value="DEATH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="16742" checksum="0B8C086676D6620E" modified="2020-12-02" version="1">MQFSKPRPKITSSVSLPCKLNETTGKTSRSFNGLAGRRIASSSNIPTGMHLLKDLPSSIKNQAADILDDPAKGQWWRKIAIHYRIREVEVNDLAFGASRHISGSETKALFQKLSVKHPDLTVLSLVDFLLSEHASHDILNLFRPYTYKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K5R9</accession>
    <name>A0A6S7K5R9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Glutamine synthetase</fullName>
            <ecNumber evidence="3 11">6.3.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A079183</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-glutamate + NH4(+) + ATP = L-glutamine + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16169"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.1.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the glutamine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.2" evidence="3 11"/>
    <dbReference type="EMBL" id="CACRXK020009109">
        <property type="protein sequence ID" value="CAB4016418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K5R9"/>
    <dbReference type="OrthoDB" id="1936100at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamine synthetase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.70:FF:000004">
        <property type="entry name" value="Glutamine synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.590.10:FF:000011">
        <property type="entry name" value="Glutamine synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="entry name" value="Glutamine synthetase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.590.10">
        <property type="entry name" value="Glutamine synthetase/guanido kinase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008147">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027302">
        <property type="entry name" value="Gln_synth_N_conserv_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050292">
        <property type="entry name" value="Glutamine_Synthetase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20852">
        <property type="entry name" value="GLUTAMINE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20852:SF57">
        <property type="entry name" value="GLUTAMINE SYNTHETASE 2 CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03951">
        <property type="entry name" value="Gln-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="Glutamine synthetase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="Glutamine synthetase/guanido kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00180">
        <property type="entry name" value="GLNA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51986">
        <property type="entry name" value="GS_BETA_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51987">
        <property type="entry name" value="GS_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4016418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="40529" checksum="D0DD27997FB61FFC" modified="2020-12-02" version="1">MTTTGVMKPDAGRYLDLDQCGFVQVMYIWIDGSGQYLRCKTKTMDFEPQVPSDCPIWNFDGSSTGQATGANSDVYLHPVALFRDPFRRGPNKLLLCETYHYDHKPTATNLRKTCKAVMELAKGEYPWFGIEQEYTLLDVDGHPLGWPKGGYPEPQGKYYCSVGTGRVYGREVVEAHYRACLYAGVKIAGTNAEVMPSQWEFQVGPCEGIQMGDHLWVARFLLHRVAEDFGIVVTLDPKPMTGDWNGAGAHTNFSTLAMREEGGLTYIYEAIERLSKVHDLHIKAYDPKEGKDNLRRLTGRHETADIHTFSHGVAHRGASVRIPRQCAEDGKGYLEDRRPAANADPYKVTEVVVRTVCEIQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8C5</accession>
    <name>A0A6S7K8C5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110252031</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028718</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027493">
        <property type="protein sequence ID" value="CAB4040937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8C5"/>
    <dbReference type="OrthoDB" id="5987267at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="55605" checksum="97AC1121CE539645" modified="2020-12-02" version="1">MRSNDNKKGVHKQGRPLLSVSELEEAEKRIIEHVQRESFPEDAETAKKGSLAQLKPFREEKLLRLGGRLERSSLSYDAKHPFILPKDHPVSELIVLHYHHLNGHVGSYQTLAKTRERFWITNGVSYVRRVLKSCQVCKRENARLREQMMAPLPSVRVSSDNDGIAYPFAAVGVDYFGPLYVKLGPKTRSKKNETLGKRFGCIFTCLRYRAVHIEVAEDLSTDSFINAVLRFVGRRDAPRIIYSDNGTNFKGSEADVIEALKSWDVERIQGSLSRRSVEWVFNPPLASHQGGVWERLIRSTKKILRSLVGQRELNDESLRTLMVEVEKIMNDRPIAPVSSDPHDLEALTPNHILLLRQNPSTSAGEFDGLDKFKARWKHVQMLADTFWERWKNEYLPTLQETQKWLKKMPNFSVGDLVLMVDKDVPRGQWPKGLVEQVFPDTEGVVRRVVIRTADGVYRRDVRKLCLLEEKLMKCMEDQEHIDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KA74</accession>
    <name>A0A6S7KA74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055584</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013101">
        <property type="protein sequence ID" value="CAB4024562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KA74"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="73" mass="8411" checksum="317704E906DE695D" modified="2020-12-02" version="1" fragment="single">MVDTARKAFPGKKIIVSSVTPRDDDFDEDIRAINRAIQSEILNFNDAIYANNDNLRDRALYFDSKHLNRNRGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAN4</accession>
    <name>A0A6S7KAN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A007746</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013491">
        <property type="protein sequence ID" value="CAB4025223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAN4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="190"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="209"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="25207" checksum="4C9A6C1B7754EDF2" modified="2020-12-02" version="1" fragment="single">MPTDDLPAFDSRLRSYQLRQRCQKQGETFDDFLTDLKLFARGLDIEETVKLIRNAITCKSFYERVKQRCLEKSKNLTLETAINIGRLFEATKDEMQVITGEDPNVTVHGIHGKRVYDPHRSIKDVVKIVTNHKKNVQPRTKPAASVERWDTLVDEETDSSDDEYQQAKNLHLLHLKSLRIHEASVMTAKQLQSVAPDPTPDCAQKMHHTKSEKQGKRDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBV3</accession>
    <name>A0A6S7KBV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080611</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030995">
        <property type="protein sequence ID" value="CAB4042855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBV3"/>
    <dbReference type="OrthoDB" id="8963429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="72"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="11068" checksum="4583B3CA8DD5EBE2" modified="2020-12-02" version="1" fragment="single">MKYETIYAIKTKQDIKVYNKPVKTLERQFPSAKQKPPIEEQKNVVYQIPCQDCSWSYIGETGRFLKTRKSEHVRNVKQSKKGSNVAKHAWTQDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KD88</accession>
    <name>A0A6S7KD88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A057833</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033059">
        <property type="protein sequence ID" value="CAB4043746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KD88"/>
    <dbReference type="OrthoDB" id="6017243at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4043746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="23288" checksum="77363DA3FA74CFC9" modified="2020-12-02" version="1" fragment="single">MALKYPLGYDDERFESIVNQNFHCLICYNVLKDPVMCRRNEHYFCHGCIAEHLRRNSHTCPTCADELSVETLQDVPRIVKNYLNELSIRCDHYDRGCRELVQLQNLKRHIAECGFTPVVCGNQGCGETISKRDRTYHESELCQFRKLKCHNCGEISTMMVGMKTEMANINTKIANISTNQADTKTKLANTNTNMANVRAEMAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEH7</accession>
    <name>A0A6S7KEH7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063589</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013879">
        <property type="protein sequence ID" value="CAB4025892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEH7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="296"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="40177" checksum="98A358117EB9A0AA" modified="2020-12-02" version="1">MAAEKEFESFLQSINLAEDYLERFNASGFNDIELVKSLELDEQRQMFDLVDLSGKPGHLLKFKKAIASYTRNLGSINIDNSNQTAVPAQKKAQKTISFIGGKFVVGENARVKEKEPFEKYIIPNVKSKRLTYHNLITKEIYLSAFTSKQSRFHAYLMGQRQFRWNVKCNLEKLEHLVSSYKNGQIPKENINCLRYRKFPEDVKIDDVSKSQRALDHIKSTIKTINEEKSKLSNRKMELYTDNLEPKKWASNEINFVQEMTTHVESMLTESNNIAHDIEHVSNQLAKRFDVASVNENEKKRKAKRVKEQKSKTKKKRSIVEKSKVGCPNTMSDMSGDDDIVIDILDDNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFC8</accession>
    <name>A0A6S7KFC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032603">
        <property type="protein sequence ID" value="CAB4043547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFC8"/>
    <dbReference type="OrthoDB" id="9451547at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="74"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="22215" checksum="19A846FD05B9D5F6" modified="2020-12-02" version="1" fragment="single">MCAVCHQLMQACRLLTNNEYESKQTWETDIDELFSKDETGAGTLTMISAEMIGLLKEYLEKQHSETETVTKEEQEFMEDKISSLENQVEDLTTECFEAKKQLSSLGMQLDESRKKLSENEEEKANLLDRVTAQKNEIEIMKKNYSHIKLCRSKSVVEELEKARRDVQKLDTQLITAVNQKIKLSEQLEQWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQD1</accession>
    <name>A0A6S7KQD1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FP protein C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016781">
        <property type="protein sequence ID" value="CAB4030323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQD1"/>
    <dbReference type="OrthoDB" id="5988934at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057251">
        <property type="entry name" value="FP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25298">
        <property type="entry name" value="Baculo_FP_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FP protein C-terminal" evidence="1">
        <location>
            <begin position="160"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="25072" checksum="46E4BCBFCCE500D1" modified="2020-12-02" version="1">MAAMKSEIEDALKSEAFQQLLQLAIQEALNVAVLKIIEPMMKTIAELQEKITSLESQLVRVENMANDNEQYSRRHNVRISGFEEERIEDCITKVVQFCNEKLKVDLSDQNIDRAHRVGKPKENRSRAIIVRFKSHKDKIAVLRQRKELKSTRFYVNEDLTSRNQQLLYCARKDCKNAASAWSRDGKIFVKRASDEKIFKIVSMSDFLQNGLLNFAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KTR3</accession>
    <name>A0A6S7KTR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nuclear pore complex Nup205</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089572</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036455">
        <property type="protein sequence ID" value="CAB4044831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KTR3"/>
    <dbReference type="OrthoDB" id="2019644at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005643">
        <property type="term" value="C:nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021827">
        <property type="entry name" value="Nup186/Nup192/Nup205"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11894">
        <property type="entry name" value="Nup192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12434" checksum="DDE3AEBCAA8D6F8F" modified="2020-12-02" version="1" fragment="single">MCSQYASDLVADVELLVEDDAIVTMAILNDVFDFLRKSVVCSRNFYEEEYFVRQVHLLITNFIVNMPLKVKELRTLGDEAARILQACAQEGLAPPVDQRQDFETFMRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LC82</accession>
    <name>A0A6S7LC82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A017787</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020836">
        <property type="protein sequence ID" value="CAB4035222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LC82"/>
    <dbReference type="OrthoDB" id="6373930at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4035222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="578" mass="64361" checksum="E18ACDE8A73646C8" modified="2020-12-02" version="1">MTTAVNPTGYGPRRGILFNGDESKYELWEVKFLAQMRLQKLYDVFVPGDKQPEAPKKADAFAELVQCLDDRSLSLVIREAKDDGERALEVVRRHYQGKGKPRVIALYTELTTLKKSENESIVDYVIRAENAATALRTSEEVISDPLLIAMVLKGLPSSFKTFSAIVVQRDKEMTFAEFKTALRSYEESEKSRNSDTGDNVMLFKNNGKFEGTCFKCGKKGHKKSDCWSKSGKTGKWCNICKSKTHEKKECRTNSGGRESTKKAEEKGFKEHSFTLTLSDNNDEHLGKTINTVYSNLLVDNGGTSHIINDKSKFIAFDGNFDSSSHVIELADGSKANVVTGKGVAKDISSVNAAAEEGGSISLDRHAKQFKSSDGSVFNIEQVGRLYYLNSISSSRNSACTLTEWHRILGHCNLGDIRKLESVVEGMKISSYDEIECKICTQGKMTQSRSRIPDRRAKAPLELVHSNLAGPINPVGKDGFNYALSFVDDYSGVIMIYFLKQKSDTLEATKQFLADTAPIGKINCIRSDNGGEFVGQKFESLLRENNIRHETCALYSHHQNGTAERAWLSLFNMARCLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS20</accession>
    <name>A0A6S7LS20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039948</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030367">
        <property type="protein sequence ID" value="CAB4042552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS20"/>
    <dbReference type="OrthoDB" id="5987465at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="61" mass="6924" checksum="C86AEE7FDF3957B9" modified="2020-12-02" version="1" fragment="single">QQGNNVTKAQHAVGEGPLFIIRLLIQVRYLLEDKKFFQNILKSKSYQDSVKAIVIDEAHLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DA65</accession>
    <name>A0A7D9DA65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">COP9 signalosome complex subunit 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000211">
        <property type="protein sequence ID" value="CAB3979593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DA65"/>
    <dbReference type="OrthoDB" id="194139at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050871">
        <property type="entry name" value="26S_Proteasome/COP9_Components"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000717">
        <property type="entry name" value="PCI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10678">
        <property type="entry name" value="26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01399">
        <property type="entry name" value="PCI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00753">
        <property type="entry name" value="PAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50250">
        <property type="entry name" value="PCI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="43473" checksum="10513639CF1D6773" modified="2020-12-02" version="1">MSDMDDDFMCDEDDDYDLEYEEDTNSEPDVDLENQYYNSKAMKENDPNGALGSFHKVLDLEEDKGEWGFKALKQMTKINFKIGNYAEMMQQYKQLLTYIKMELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYYDREEFAKLSKILKQLHQSCQTDEGDDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEKSLHIKSAIPHPLIMGVIRECGGKMHLREADYDKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDINEFEKILRTNRKNIMDDQFIREHIEDLLRNIRTQVLIKLINTLVRPVRDCNITPYHILHLAGTKYTCILDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBW2</accession>
    <name>A0A7D9DBW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A084261</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000210">
        <property type="protein sequence ID" value="CAB3979575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBW2"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013151">
        <property type="entry name" value="Immunoglobulin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00047">
        <property type="entry name" value="ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="289"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="323"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="326"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="47811" checksum="1FED7187AEA26D05" modified="2020-12-02" version="1">MEKLIHNQTYEYLIKENLLANSQHGFRPNHSTLTALLDITNRWYQNMDIGQLNGVIFLDLKKAFDTVNHDILLSKLAIYGIRGSALRWLNSYLTGQIQYCQVNAHLSDPLCVTTGIPQGSALGPLLFLIYINDLPNCLEHTKVNMFADDTQIETAGYDVNTTAEEHNQDLENVAVWLSANKLTLNKTKTEYMIIELRSNYSSRKVYTKPGESAVLVCSLNETIQWKKDGKIITNDGNIKIFQNLLVINSVDDDDYGEYFCELQNYKRKGIRMRLIMINDDGNGDESTKFLIPFIVVLILLVCLLIVTAYLLLRRRPKLATTIQRDPSARDNDYDNDKPSEISMKERFPSGETEEEKYNTLSNVREEEPFYQPLVDVKCEETSPQSMSEASRSNLYEEDAYDNIGAIKDENNHIYAEAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DE45</accession>
    <name>A0A7D9DE45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000549">
        <property type="protein sequence ID" value="CAB3982871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DE45"/>
    <dbReference type="OrthoDB" id="6145513at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26598" checksum="AC734E1E07AFE511" modified="2020-12-02" version="1">MEKLENYIVDISGIDCNQLHFFDESSVVVTSGKRRRGHSAIGTPAIEVQRYASNATYTVNLLHNIRGVSHFNILRGPSNGLELLNFFEEALEQENDSKWKILVTGSIPMENLPTKSHDVMSKKERRTLLDKIDILPWTVNDIDSDHETLKLEFYDGAHGIAKFTVTVKAGLDFTVFVYHWPIPDNHRYIYTQDKRLLNSIECVNRFLNSIDNSNLCNGVPKEFNSVAVDPTWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKM7</accession>
    <name>A0A7D9DKM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042944</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001119">
        <property type="protein sequence ID" value="CAB3987092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKM7"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="389" mass="44096" checksum="978267F7ECED5B9A" modified="2020-12-02" version="1">MINCSFTTSNFPQEWKIAEVIPIPKLGDKELACNNRPISLLPVMSKICERLAHGQYNNFLCSEGKLSAHQNGNRKLHSTETALLKVTDDILKAMDEKLITIMVLIDFSKAFDSINHETLLNKLWNIGMAPSALKWFSSYLTNRSQKVRLGEFLWQRLPLSHGVPQGSILGPLMFTVYVNDLPSSVVNCKPECYVDDSKLYVSFVLHDLVSAIGQINKVLDQLCSWCCGNSLLINPEKTKVLAFGTRQRLQQLPGFSIKLLSKQIEPTRVAKDLGVHLDSCLSYTHHVDKTVSSCMYSLFQINRVKHLLDRKTLLLVIHSLVFSRLFYCSSVWSNTSKENVKKLQLVQNFAARIVVGLRKYDHVSPALKELKQMAEYYRPIVSPRCSACF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DN91</accession>
    <name>A0A7D9DN91_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="4">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A060059</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endomembrane system</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020001549">
        <property type="protein sequence ID" value="CAB3989770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DN91"/>
    <dbReference type="OrthoDB" id="273089at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16495">
        <property type="entry name" value="RING_CH-C4HC3_MARCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046356">
        <property type="entry name" value="MARCHF4/9/11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011016">
        <property type="entry name" value="Znf_RING-CH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46053">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE MARCH4-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46053:SF2">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12906">
        <property type="entry name" value="RINGv"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00744">
        <property type="entry name" value="RINGv"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51292">
        <property type="entry name" value="ZF_RING_CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="13" id="KW-0436">Ligase</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="9" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <keyword evidence="8" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3989770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="28286" checksum="3A7EA8D99AF3F4A7" modified="2020-12-02" version="1">MDSEEGLTTEDGKDDDEEEMKICFYIPALLSNSTSTVMDTDDTQFKDQAYMKETPNHSIKDENDSLYNSESTSITFREDMKDDKMCRICYGGDSTFDKLITPCLCSGSTKYAHETCLLQWVSFKGSKACELCLYNMEIHCKGIKPFWKWQKPKSCDAVTTLSMLYSIVMFMFLAMVMWIATNKCTSALCITLYCLCIVAVAYFCYCCGYLHCMKPYCRAFWDINRRWSVVGRRISSENVENCDSKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DN93</accession>
    <name>A0A7D9DN93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A046655</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001482">
        <property type="protein sequence ID" value="CAB3989409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DN93"/>
    <dbReference type="OrthoDB" id="342024at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006415">
        <property type="term" value="P:translational termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd01883">
        <property type="entry name" value="EF1_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03704">
        <property type="entry name" value="eRF3_C_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04089">
        <property type="entry name" value="eRF3_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000017">
        <property type="entry name" value="Eukaryotic peptide chain release factor GTP-binding subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000270">
        <property type="entry name" value="Eukaryotic peptide chain release factor GTP-binding subunit ERF3A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000020">
        <property type="entry name" value="Translation elongation factor EF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054696">
        <property type="entry name" value="GTP-eEF1A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050100">
        <property type="entry name" value="TRAFAC_GTPase_members"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23115">
        <property type="entry name" value="TRANSLATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22594">
        <property type="entry name" value="GTP-eEF1A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="8">
        <location>
            <begin position="140"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="40"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="65"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="103"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="119"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3989409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="566" mass="62943" checksum="1D18D796CA9A091F" modified="2020-12-02" version="1">MEDDSTPDSWDAIDDSTETSEDLSSGIQSLNVNARPFIPNVNAPVFVPSFGQKTNTNAPLTKPIADIKDDTPEVADKNDDLDKLTENEPEVSNEEANNGTEENKDDNEVSEELTDNALDDEKPTETTKVKPAPVEEEDSKEHINIVFIGHVDAGKSTIGGQVLYLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAQFETSQKKFTLLDAPGHKSFVPNMIGGAAQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILINKMDDPTVEWEQARYEECKDKLIPFLKKVGFNPKTDMHFMPCSGLTGANIKEELDPNVCKWYSGKPFLTYIDELPNLQRSNSGPVRLPVAEKYKEMGTMILGKLESGMISKGQNLMLMPNKVSVEVMTLFSDDYETAQAYCGENVKAKLKGVEEEDISPGFVLCDPSSLCHTVRTFNAQVVILEHKSIICPGYSCILHIHNVVEEVTLLGIIALIDKKSGKKSQTHPRFVKQDQICVAKFQTAGIVCMETFAEFPQMGRFTLRDEGKTVAIGKVLKLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXT4</accession>
    <name>A0A7D9DXT4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016602</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002626">
        <property type="protein sequence ID" value="CAB3995234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXT4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="22537" checksum="27A2B4934FDD5560" modified="2020-12-02" version="1" fragment="single">LKVNPPNDIDNDFRQISVLPQLAKALEKLQLSLHRQDLTIRNNQYAFTQNRSTVSALTCISQKWFNATDNSPDSRMVVHALFLDRKAFDMVDHGILLRKLAELNINKSLGLWIQSFLDGRSQQVKLNYFLSSVSSCPAGVPQGSVILPALVNDNVHINDIEDSVPNSIAVDTHKYGDACTLDQSVKEGDVSQMQEVLNSMQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3N4</accession>
    <name>A0A7D9E3N4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073531</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003706">
        <property type="protein sequence ID" value="CAB3999929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3N4"/>
    <dbReference type="OrthoDB" id="9445642at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10443" checksum="92483F67031DF6A8" modified="2020-12-02" version="1">MILRACIKCKRFEEVNRQFKRPTRFGIRRHTRDGNSTSQTLCAGHQTTMRSSLKGSLKEEGTIKSSRRAESIGLNTIHPKEIQVSIIDANSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E7N3</accession>
    <name>A0A7D9E7N3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039426</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004438">
        <property type="protein sequence ID" value="CAB4002744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E7N3"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="728"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="728" mass="82050" checksum="68F9D25D7C1D2B69" modified="2020-12-02" version="1" fragment="single">MPNIAAMGTVLNFVVMLTILSLCLKLKPSPTHCQPDTSLPLGNIAISSELARLPDKLCFVWISTRDTKLRSFNLPKYYRYGMDLRIANVSNHVLISILLAGDIATNPGPAHVNNNSPTHPGGLNVLYMNARSIKAFVPLVENPSSKVCKITLIQQLVYSNCYDVVCICETWLNDSVMSSEILTGYNIYRKDRVGRTGGGVLIAVKSDIRSTHRQDLERDNVELAVVELIKDNSKSVILYTVYHPEPGPEDLHKLNLSLQGTPESACFVVVGDFNLPSLTWSPDESAPTNIGGSQEDSEFCVLTKDNFLTQFIKGPTHIAGNKLDLLLSNCPEVIDHVSTSTPVESNFPSDHYLVDFFIRLKFKRAKRVQRKAYNYKRADFEALRNRLQLNALDMSASDDVDLYWFRWKALFLAAVEKCVPVKVIKDTNSPPWIDGEIRHLLRKKYRALKKYRENRTEQRKRKLRSLSNDIKILVRHKHRDYLNKIVGSFCENPKLFWSYHKAVLHHRSGVDSVITHNGQTVKTSGEKAELFNTYFCSVFTSPNTVPSTMPSNPNRSDVEISDVQLSVEEVELCLAGLDSSKASGPDGIPAHILKQCSKEIAPSLCALFNHSLRTGRFPAEWKNADVTPVHKKDLKEPAGNYRPISLLSIVSKVMERCVCNRFYAHVSRLITELQHGFMRNRSCVTQLLPVLHSISKSLDRNTQTDMLYFDPAKAFDSVDHAILIQKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8X4</accession>
    <name>A0A7D9E8X4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Polycystic kidney disease 1-like 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A064466</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell projection</location>
            <location evidence="1">Cilium membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the polycystin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004911">
        <property type="protein sequence ID" value="CAB4004446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5967971at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060170">
        <property type="term" value="C:ciliary membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005262">
        <property type="term" value="F:calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050982">
        <property type="term" value="P:detection of mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000086">
        <property type="entry name" value="Polycystic kidney disease 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.60.20">
        <property type="entry name" value="PLAT/LH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057244">
        <property type="entry name" value="GAIN_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046338">
        <property type="entry name" value="GAIN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000203">
        <property type="entry name" value="GPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013122">
        <property type="entry name" value="PKD1_2_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003915">
        <property type="entry name" value="PKD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051223">
        <property type="entry name" value="Polycystin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046791">
        <property type="entry name" value="Polycystin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10877">
        <property type="entry name" value="POLYCYSTIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10877:SF150">
        <property type="entry name" value="REJ DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01825">
        <property type="entry name" value="GPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08016">
        <property type="entry name" value="PKD_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01477">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20519">
        <property type="entry name" value="Polycystin_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01433">
        <property type="entry name" value="POLYCYSTIN2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00303">
        <property type="entry name" value="GPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00308">
        <property type="entry name" value="LH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50221">
        <property type="entry name" value="GAIN_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="GAIN-B" evidence="12">
        <location>
            <begin position="213"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="domain" description="PLAT" evidence="11">
        <location>
            <begin position="409"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4004446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1418" mass="162652" checksum="DFE0795DB3A1567E" modified="2020-12-02" version="1" fragment="single">PEEVKPNLYGTLSRKGSALEKIGKETRQVVEVWDEAVETITAAMAKKKLSGERPTVVKTPNFKIKLSKSREKEGRRIHAEDGKLNESKPWISLPKLSKLPFFRRNESENIFTEAISFEKNPYTWDVERSHYIQPAVFSFNFRNEDGKKMSVKKLPEDIEIRLPNRKENIVHNPLNNSADSEDFLLYSFKVDEDHYEEVIMIDIRHSKSADEGATFYLKFGEEVSPTNYDCKDPLSVNMTCFDATVQIHHNDQSSIVFIRNSEKVESVKGEVSVGLLLCPYAHNENKPSTCNPRNHTYEIFVQTVSCRYWNHSESEWSKNGCRVGNKSTPLHTSCLCNHLTAFGSYVVKPNPLNKFSAEDFRNGYVCFVVVAVIFCFYFLFLVWARKADRSDCSKVGVCALSDNGPQDRYRYEVAIWTGMRRNAGTGSEVTIILSGDKNDSEPRCLVNPQNPSFTRASLEKFLLTSSKDIGSLYCIRVWHDNSKGSWFLSRVMVTDLQRNERFYFICDRWLAVDEDDGQVERLLPVASDEELADFHHLFYSKAKRGLSDSHLWVSVLNRPPQSIFTRVQRLSCCLCILMTTMVANAMFYGTRSEPKADTTNYVGSYSFTWDEVYIGVVSSLIVVPVNVIILNIFRNVRPKSRKTRPHSKASSVTNLDSGYRNSRASFETLVESSDQEPRESIAGNAGMNVYSRIRSAELKKKRDEELSRWARFKRCIIPSSLPHGFVYVGWAILVIVTLGSATVVILYGMQFGNGRSLQWLLSIMVSIVEDIFILQPLKVLMFALGFALLVKKPDEGEFEMLGDYDDDEVQQGDILGSPIPEKRVPASPRLPVRPTEEQLAVMRKARMKERKMFFLIQEIIVHLIFMIVIALVTYGHKDTRSVHMFRHIDELSKMTDKITNFTHFWNWSRIVLVPKAFPEKLYNGRYVPSYGFFDDGYNNLISKARMRLLRVNNDNCMVADEFKGKIGECLKDYSIFNQDEVCYHSNWTGVVKGQEKDRWCFQDWKDLDGYPTLGIFNSYSGSGYIKELRPGDDNNATVNELESTHWLDKQSRALFVEMTIYNANVNLYTSITLLFEFPEFGGIFYFRNIIPMRLKLYVGGFAFFIFACEMAFALFVLGYSYVALKKLYHHKMAYFKNFWNIMDFSILMSSFAAISVYVYRLGITTKLMRAVQDRDGEFVNFQYVTYWNEILSYIMALVVSLTTVKLTKLMRFNLRVSLFGKTLQDAKPALAGFSIQFGIVFFAYVMVGVLVFGYNVSQFKSIVSAMMALGRVILGKSQFIELFSADPIIGPLFFFTYVTFVCWILVTMVVAILTDSYHEVQDRCFGMSNEYEMVDFILARLRAWSGFGGKKKSRIPANQRWRKAGIKAKAAATLGRHRSYKQSAENIAFEKTGDLMERFEDSIKSLEKKVNKLCVGVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIS1</accession>
    <name>A0A7D9EIS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calmodulin-regulated spectrin-associated 2-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016243</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006612">
        <property type="protein sequence ID" value="CAB4009909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EIS1"/>
    <dbReference type="OrthoDB" id="2125658at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036449">
        <property type="term" value="C:microtubule minus-end"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051011">
        <property type="term" value="F:microtubule minus-end binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031122">
        <property type="term" value="P:cytoplasmic microtubule organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007026">
        <property type="term" value="P:negative regulation of microtubule depolymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032940">
        <property type="entry name" value="CAMSAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058042">
        <property type="entry name" value="CAMSAP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022613">
        <property type="entry name" value="CH_CAMSAP_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21595">
        <property type="entry name" value="PATRONIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21595:SF0">
        <property type="entry name" value="PATRONIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11971">
        <property type="entry name" value="CAMSAP_CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25532">
        <property type="entry name" value="CH_CAMSAP2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="341"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="448"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="561"/>
            <end position="672"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="700"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="369"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="448"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="573"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="607"/>
            <end position="631"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="633"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="703"/>
            <end position="714"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="740"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="770"/>
            <end position="780"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="781"/>
            <end position="790"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="876" mass="95728" checksum="A3CC399B32BAD0D7" modified="2020-12-02" version="1">MDGDSGLDVLSNDGILDIIPPSEYDPFEAKFCASLFWLVFHATEDGGLEDVPNTVTSPIQRLDKKNGFVVHPEIVEFLCKGEVYCTVCTRIFPGKVMLAGHWSVIQTLSRNGVYVVDNTDVAVTDASLEQTNPFNQDAHIALMDALMTAYSSQVVSIQSVVKAVRRFSTFSASRELPFDLEDALLLWVNKTNVAVNAKYTQPTRSSAGKLLRNRGQVKKAGLRSEEGTATVVFPVIDDLLKGLCDGRSLLGVLMFYEPSVINIEDICCSSELSTEDSTRNLDVFLGLCSQYFCTSVLALKIEDILYASPSLKINIVALLAEMFSKCEGNVKSGQEIKTEISRSKTSCSQNGDVMVNGHDGVGGGRSHSAPMSRNPNSFDKSSVNNSRPDSGNIPTSNSLKHQERNIALKIQNYIENESVDLGIASNMTLSNKNSSSMTSGNITSNMTSSNITSSSMTSSNMTSSNMTSSNMTSSNVTSSDEVETPDDKDTVEVHGVVVKLRKKVPRSVEPGGGHEALLSRRMKKSLCGWSQEDISDATSPTSDNEEQFDAKSDEIPAVISQHPTHQPSFPASDHPDLALPDEPHHNLDLDLHSLPEDEPPIDMLSPISETTEPGGSPGNSLNNSMSSTLDQQEFLRQERKNSEGGRDINLTPPKAQTPRKSNSQPCVKDNSIPRGSYIISDANHTPETAFAAGIPVVERESVNSRGSTSTSQSSDLEQGGTHEQSNYTDQRFKSGGSENSLRDNVRDESDITDQRQPAVNHWSERRNDNRYSTFTKSKNHNGSDSKDIKFPKLADKSGEISKGNGLRTFADIEDKTRNEGPTITWFGQARNEERSVGDGRYLESGGKKTNWGEMASEVNESSDVMKKGNMILFPYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EK60</accession>
    <name>A0A7D9EK60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome P450 4V2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A060309</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006763">
        <property type="protein sequence ID" value="CAB4010373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EK60"/>
    <dbReference type="OrthoDB" id="1470350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050196">
        <property type="entry name" value="Cytochrome_P450_Monoox"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24291:SF189">
        <property type="entry name" value="CYTOCHROME P450 4C3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24291">
        <property type="entry name" value="CYTOCHROME P450 FAMILY 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5 6" id="KW-0349">Heme</keyword>
    <keyword evidence="5 6" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="356"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4010373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="47308" checksum="AD74E910B305E4E8" modified="2020-12-02" version="1">MTLLLYIGYECHHKHIFCFLYFSTGNKWKSRRKLLTPAFHFKILNEFVSIHQKQSAILIQLLQAKADKGEFDIVPYITLCVLDIICETSMGFDIKAQFGSNSEYIKAVFSTCELIQQRQKSPWLWLDIIYNMTSSGRRHRIALDILHGFSNKVINDRIEQRKASKFANEDTSCVTAIYSSSNRRIRAFLDLLLEEYDQGNITKEGVREEVDTFMFEGHDTTAASLQWVIHLLGRHPDVQSRLQQEVDDFFESVSGDGNIQPDQLKDLNFLECAVKEALRLFPSVPLLGRELTEKCKFGPYLVPKGCTVIVPPMALHRNPEVWDDPDTFNPDRFLSENNAVRNPYAYVPFSAGPRNCIGQRFAMMEEKIVLASILRHFNIKSTQETEDIKITPEIILKPTNGIMVELETRIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENJ0</accession>
    <name>A0A7D9ENJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002806</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007193">
        <property type="protein sequence ID" value="CAB4011573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENJ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11633" checksum="09C3AB103C2458B1" modified="2020-12-02" version="1">MGQVFIGVFTAVFVLKTAPPHGGTFNWDAGHVEETCEHTCGIKEMLITVAGAESLTAESVHLMKAQEGLALEYLEYYKLITVHHSIVNNSKPKPLLKKWDFTTSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESS0</accession>
    <name>A0A7D9ESS0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Asparagine--tRNA ligase, cytoplasmic</fullName>
            <ecNumber evidence="3">6.1.1.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Asparaginyl-tRNA synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A038622</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>tRNA(Asn) + L-asparagine + ATP = L-asparaginyl-tRNA(Asn) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11180"/>
            <dbReference type="Rhea" id="RHEA-COMP:9659"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58048"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.22"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.22" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020008885">
        <property type="protein sequence ID" value="CAB4015893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESS0"/>
    <dbReference type="OrthoDB" id="1931232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004816">
        <property type="term" value="F:asparagine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006421">
        <property type="term" value="P:asparaginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04323">
        <property type="entry name" value="AsnRS_cyto_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00776">
        <property type="entry name" value="AsxRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.140:FF:000151">
        <property type="entry name" value="Asparagine--tRNA ligase, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.930.10:FF:000040">
        <property type="entry name" value="Asparagine--tRNA ligase, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1910.20">
        <property type="entry name" value="asparaginyl-tRNA synthetase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004522">
        <property type="entry name" value="Asn-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048952">
        <property type="entry name" value="AsnRS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002312">
        <property type="entry name" value="Asp/Asn-tRNA-synth_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00457">
        <property type="entry name" value="asnS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594:SF16">
        <property type="entry name" value="ASPARAGINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594">
        <property type="entry name" value="ASPARTYL/LYSYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20917">
        <property type="entry name" value="AsnRS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01042">
        <property type="entry name" value="TRNASYNTHASP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 14" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="39"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00039867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00047844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4015893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="516" mass="59969" checksum="CB9D21130AA02BE0" modified="2020-12-02" version="1">MEFCGKEPFPKIMVDSKEKGMKFEEISKAQLKKLTKIFQQEQRKSDKREEKESEKAEQRAKNLEEAKQIVIEEDPSLPKPRKIKIRDATSHRDERVMIQAWIHRIRRQGKTLMFLVLRDGTGFLQCVLSDRLCQTYNALLLSTESTVTVYGKISAVLEGKLAPGGHEMKVDYWQLVGLAPPGGADAIMNAESGVDTQLDNRHILMRGETISKVMKMRAIVSQCFRQHYIDRGYYEVTPPTLVQTQVEGGSTLFKFSYFGEDAYLTQSSQLYLETALPALGDVFCLAQSYRAEQSKTRRHLSEYTHVEAECAFITFDELLDRIEDLACDVVDRVLKSPYKHLLYELNPEFKPPKKPFKRMNYVDAIVYLKEHDIRKDDGTFYEFGDDIPEAPERKMTDQINEPIFLCRFPAEIKSFYMPRCPEDTRLTESVDLLMPNVGEIVGGSMRIWQYDELLEGYKREEIDPTPYYWYTDQRKFGTCPHGGYGLGLERYLCWLLNRMHIRDVCMYPRFTGRCRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9E9</accession>
    <name>A0A7D9H9E9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Galactose oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056204</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000023">
        <property type="protein sequence ID" value="CAB3976982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9E9"/>
    <dbReference type="OrthoDB" id="7923847at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="329" mass="37283" checksum="C28B9F2A55CE79FA" modified="2020-12-02" version="1">MDQIKVMMNQLVERLLANKRPSPTDGMLNAPREDILIAGGYGGLSKTGKNTVIYSWEKNGWFDVSQMNEKHITASSFIYNDLLFVVGGIDSKTIETLDLNHLPLKWMKFIGELPYKCDDHQTVVYQQRVIHIGGYNYGQKRRSNMISELQLTSPCTMNKLREMPEPRVGHCAEIFEDKILIFGGEDHRGALDGVLELDPKKNECKEMPPLPLRLARMATVRWRDQVVVFGGRDRDGRVLNDVFMYDCKTGKITALPRMLEERHGCCAVITGNTIVVMGGENINANEKVQTLNSVEYFRMGGSTWKYLTAMNEARWGAVATVLPSTRKYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HGQ7</accession>
    <name>A0A7D9HGQ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063697</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000686">
        <property type="protein sequence ID" value="CAB3984017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HGQ7"/>
    <dbReference type="OrthoDB" id="7692288at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="25039" checksum="8AA626592BD224AB" modified="2020-12-02" version="1">MCGPTQCGKTEFIKKIITNIDEVIKPTPDKLVYLYSTDQTKYDDIKDIIRTNSAKSKLKTFEFVDCSALGIPTISELKNKLGNATLLVLDDLMILAASDTKYVENLNNIASRDSHHANMSVIFVCQDLNYGNGKLRNARVNSQYHMMFNNYTDLRNIEMIASNKKINLKKIHKVIKSVEKKSQYEYIFFDGSPRGYSNTRIRTGILPGEKTVVYECTPDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIE3</accession>
    <name>A0A7D9HIE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Neuropeptide FF receptor 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A085900</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000496">
        <property type="protein sequence ID" value="CAB3982407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIE3"/>
    <dbReference type="OrthoDB" id="5980579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695:SF9">
        <property type="entry name" value="LEUCOKININ RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695">
        <property type="entry name" value="LEUCOKININ RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 8 9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0807">Transducer</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3982407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="468" mass="52746" checksum="55071A38EF97FF06" modified="2020-12-02" version="1">MVNVSNASDMTDELNDTTKIINIFNYFLYTLIVVFGVPGNIMVVWSLLLTRKDKVNRSYKILVINLAINDIILVLITSPFQITQLIFETFPFGRVMCSILWPLQTACYGAGLFNMVALNVHRYYVISYPTSSRSLGKVTGVAVALCWMIPSLITALPYALTLQYNSTTEDCVETWGDYTAGVYTMYLFSVQYILPLIVIATLNLLTIRRLKRRYMFRLNTARLSADNLHAHKRIVKMLISIILIFALFGLPGQIMWLIPVVTEIKNNSNYFAILSLVDIFNYMYCVLNPVLFFTYNNECYGRLKKFLASVFFCCGYRWEISSQTGTRHEAVKTLLKSRASDSQDTSGSDGPRVDSRYAPAIPKNLLDKLHENSAKDSEQHMVPAAIYSSLTGLYTPAGSCHGNGLDKSTQGSSQVIKVAADDKEIFRGSFVELLRTRNLSNDLMKRLDESPETAIVEEGLPNTDQDKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQR6</accession>
    <name>A0A7D9HQR6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001300">
        <property type="protein sequence ID" value="CAB3988263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQR6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11933" checksum="243044A3900CFE37" modified="2020-12-02" version="1">MHNSYGQLNDVICDQEMQNMDDGTNEDAANVADKRSYVPSGSTPHKPPRKRSLVGPSPLKSAKKLTFTKQPSPAQRAAKYLVTRAKGRHSPNILSETKKKCVDVRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQT5</accession>
    <name>A0A7D9HQT5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001068</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001810">
        <property type="protein sequence ID" value="CAB3991234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQT5"/>
    <dbReference type="OrthoDB" id="2717295at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="206"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="252"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="135"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="259"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="269"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3991234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="489" mass="54948" checksum="4A94017D58E37D88" modified="2020-12-02" version="1" fragment="single">LESEDTNAACVSGNGEISINFDEEAASDESENQISTGQLNEYESLLNTVRSLEAKLESRINDLASEVHETRLELHVEKIARGNLEAEYTELASEALEIRSELDIRNLTRDENENIKSRDESISTVFNKGFLVKENASLTDENALLKQQINNYKCITLDLRTKVKDLENEKDSLVTVIQILHDDQNQHTCHANKSIASWNVVNNHKRSKIGRGSSKNYSTIGPSGDIRDKDGATRIKNQYIVLSDDIDNSEASEDDSVILKSTQAPQNKEIQDTSKERPKDPKHGCVAASDSKTVTSTDELVDIFNDHFSNIGPKLAESIPNDNDVSFRDFITQQKSKTKNSFSFRPVSVTLVYTLLVNLSTTKATGMDKISAKILQVAAPVIAPSLTEIFNMSIDSDQFPSGWKAARVIPLFKKGQRSMLDNYRPISILPVVSKLMERIMYDQMYEYLNQNNLFSKHQFGFRPYIIPQLLHYCIVRTNGIPTWTVGCIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTY1</accession>
    <name>A0A7D9HTY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004301</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001363">
        <property type="protein sequence ID" value="CAB3988681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTY1"/>
    <dbReference type="OrthoDB" id="5986006at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF23">
        <property type="entry name" value="ZINC FINGER MYM-TYPE PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="382" mass="41979" checksum="BE2A84A041ED4891" modified="2020-12-02" version="1" fragment="single">MSYASGGQDPDKNRKHVSGAAKCKAKEQRAAQERNLLSKVPKISTLFSSNSSAPNPSGETSDLDASSSSISVDVLADVQSQHHDDGASASSTTVSETIPATETSVTSNDPSDPHSCDLGLWPDNISNSMREYWATKGSSDCSNSDADFSATSTLLEGGKYKRQCQKSMFTYTHQLTKEQHPRTWLCYSPSQHALYCFACKLMTDVSVFGKQGCSDWKHASQQISRHERSSNHQQPMVQVLQCSDANSRVDLELVKQTKTEREYWCSVLERAVETIRLLGERGLAFRGSDEVVGSAKNGNYLGVLELVAKFDPFLAQHIKLHANKGRGHTSYLSKTICEELIDLMGNRVLDHIISEVKSAKYFSVSVDSTPNVSHADQLTCIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWA3</accession>
    <name>A0A7D9HWA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061538</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001937">
        <property type="protein sequence ID" value="CAB3991893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWA3"/>
    <dbReference type="OrthoDB" id="10028873at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1050.80">
        <property type="entry name" value="VPS9 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003123">
        <property type="entry name" value="VPS9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037191">
        <property type="entry name" value="VPS9_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109993">
        <property type="entry name" value="VPS9 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51205">
        <property type="entry name" value="VPS9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="564"/>
            <end position="665"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="699"/>
            <end position="747"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="587"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="699"/>
            <end position="711"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="718"/>
            <end position="731"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="733"/>
            <end position="745"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="915" mass="105140" checksum="9B4F809E88FA385E" modified="2020-12-02" version="1">MLLYLRNDSLYRIDTIELIDGCYPRITYDVGTFGNDGVRSPPPTEEYSVSDLNIEPALWGIILILDRVCVDVKRRRFSWATTSVGKILDDEGTEDPSYRTHYADDERYEYDDNIDELFNLAEHLITISHSRTKSIRESQEEQSSLIRMLYCCILPKIQIYQKDLRKVEEALKNQMSYIRKLDHDIERDSQVLDELYKVLCKQQDERLHQFEHIALEKKCTKMFVMAIDADLKKRRHQLEDQIDVNQGIVQHIKAAIRDNGETKERKHELEEARKLTANLHTILQRVLVAIRDTIRESLESERFQLHDNQTIVVEYLKCKEMSEKQKTLAKRQMEKKVRAMSILENLKRIKEDVTKDEGVASATITSHSGVRPTDVISDSHLPEYQTLSERVTAIVNNPEHPFGEEFAKFTRYIRGSCQDILDGVQSSREGGEKRKKNTASFENGYLLVDCDGTSQEEYLTPLEKLCEQIKEHSDRTAQFFLEQFNSVYSDVLKRKLQLCYEENFYTQVGRDIMKVYETAYKKHKEKMIHDLEFLSTYPIGCLDLGMKDEWWLELFEKRRQATIARQRSASNPIPRRSSRIETRFRSDSSTPPESESSSTTSSSSRSSNASSKDHVYTHTQASKEHKKRSPGSIRSKMISFLRRKSEEVSGGSKIENRNSKGDSCYDNYDSFKANKMSGEIEAYIPNGTCTNNNEQAYIPNGTENNGNSSSLPVGIGNLNDNQNPTSRSSTAIYEKDTTKNEHTKVETPQYENELSKFSKYFGPSLDCLKDVFEVPSVFGKLKCLTKSLTKVTNAVQELRQQVLDRVDENNETKSLTKVTNAVQELRQQVLDRVDETISLAITADDLLPLMVLIILQMDPADASAIVVELKMMQDLIPKFLSFGCHGWALVEFDMASKVLQSLCTQFDWSTTFTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I762</accession>
    <name>A0A7D9I762_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC110048984</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003576">
        <property type="protein sequence ID" value="CAB3999388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I762"/>
    <dbReference type="OrthoDB" id="5975103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="39486" checksum="F7E33986B6192BD4" modified="2020-12-02" version="1">MAKTTKTALIGLRFRLQSHFLLKKNVDIMGDQELAKSNQVYEAAIVELKRQGFGNVEHHNAISREDLQIIQLSYNPAVPDPKSLQRFVWFNIMFHLIRRGRENLRLLTKQSFAIKTDATGRKFVYQAADELDKNHRGHENADDSPGEGRMYEQDGSLCPVKAFELYLAKLNPKLSCLWQKPKAKEHFKETNEVWYCNVPVGKNTLGTLMSRISKELELSQTYTNHCIRTTAVSLFDECNFEDRHIMRVSGHKSESSIRSYSRRLSEVKQKQISHSLSSACFNSTNASSSSEIVLVNEAEEIVCTGSETTNCPQSPVLTQNFASHSQETVNFHSAAFAGANVTIKFYKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I854</accession>
    <name>A0A7D9I854_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Allatostatin-A receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A077200</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003604">
        <property type="protein sequence ID" value="CAB3999505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I854"/>
    <dbReference type="OrthoDB" id="5956589at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45698:SF1">
        <property type="entry name" value="TRACE AMINE-ASSOCIATED RECEPTOR 13C-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45698">
        <property type="entry name" value="TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3999505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24561" checksum="42D90F1B60AA76EC" modified="2020-12-02" version="1">MNGTLISSLPKSTDSTRTVTKVIFSLTATLALIGNLMVLVLFARFPKWLKKKHCQCILNLAVTDILTAISLLVVPKFVQDPDAYTVPLGYSSREFYCRIVWSHFIPFSLGITSVYTCLVLAIERWFAVIRPVFYKEKFGVRTMQILIVCSWVAGIAFEAPVIARVEGYQGPNDSKANCKWTVETNKQKSWGLAIFLFAGQTFVPCCLIVFAYVHIFTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8J7</accession>
    <name>A0A7D9I8J7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P2X purinoreceptor 7 intracellular domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A000608</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003668">
        <property type="protein sequence ID" value="CAB3999785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8J7"/>
    <dbReference type="OrthoDB" id="5955457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="50"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23091" checksum="2A2720368C41D547" modified="2020-12-02" version="1">MARSSTSSSSEVDKDISPNMNVKFETDKAKFSLQPYLFEPTIIKKGSSSSSDSESQADEEGSNSSADESRLDNLEWCKCGHCQEIPKMLSLNEEVTIIKKIKDPLTCITDNPAFTSVCLDMFVLRTAWYQYRQEYENPFEGPDNQRNRHIAYQQLARFGWGVLGRHIRVALPSCAVSCIRAHFPPPGPEDDHVYVGFKPASDEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8T8</accession>
    <name>A0A7D9I8T8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nuclear pore complex protein Nup98-Nup96</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A084569</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Nucleoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nuclear pore complex</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the nucleoporin GLFG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004542">
        <property type="protein sequence ID" value="CAB4003115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8T8"/>
    <dbReference type="OrthoDB" id="3797628at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031965">
        <property type="term" value="C:nuclear membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044614">
        <property type="term" value="C:nuclear pore cytoplasmic filaments"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008139">
        <property type="term" value="F:nuclear localization sequence binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017056">
        <property type="term" value="F:structural constituent of nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051028">
        <property type="term" value="P:mRNA transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000973">
        <property type="term" value="P:post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006405">
        <property type="term" value="P:RNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034398">
        <property type="term" value="P:telomere tethering at nuclear periphery"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.2360:FF:000001">
        <property type="entry name" value="Nuclear pore complex protein Nup98-Nup96"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025574">
        <property type="entry name" value="Nucleoporin_FG_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037665">
        <property type="entry name" value="Nucleoporin_S59-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23198:SF6">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23198">
        <property type="entry name" value="NUCLEOPORIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13634">
        <property type="entry name" value="Nucleoporin_FG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21240">
        <property type="entry name" value="Nup98_GLEBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0509">mRNA transport</keyword>
    <keyword evidence="9" id="KW-0906">Nuclear pore complex</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0811">Translocation</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="100"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4003115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="40834" checksum="88EA86B7DADC3DF0" modified="2020-12-02" version="1" fragment="single">SIFGATTTNTGTGLFGSKPQTTGGLFGSTPATGGLFGNTATAGQNVAGTPAKFIPQTSTDTMMKNGIQSNINTKHQCITLMKEYDKKSLEELRMEDYQLGRKGPQASGTGTTTGTGMFGSSFGTSTGGSTFGTGGFGTSTGTGIFGQSGQTNMFGAKTTSGGLFGNSSTTFSAPSAFTNTFGNKPGGLFGTTTTTPSTGLFGTTPAFGTASAGSSLFGTPSFGQTTQAGVFGASSQPGGMFGKPAFGTNTSGAGGLFGTSTFGQTSQPSLFGPKSTTGTLGTFGTTSTGGLFGTQNKPGFGTTFGTGTATNMFGNTTGTGLFGNSSLGFGTTGSTLGQTSALGGTFGQTTLGGIGTGLVGQNNVAALQQQQQLQQQLQQQVLALTSSPFGDSPLFRNLTVRFMVIQLWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IF44</accession>
    <name>A0A7D9IF44_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107357678, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013343</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004832">
        <property type="protein sequence ID" value="CAB4004199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IF44"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="234" mass="26787" checksum="0413488F1989C78E" modified="2020-12-02" version="1">MRSDSSRGITSGTLGTNPKSSVKEQFEVTTSLTTAIFQIPTDPVIHANMKLGAQHKPAPPAPCKRYTASMIFFGMNNVNDKSTKNGFDDRMKDQIKSVKQRYLHGVIKWFICTYIIDMEMFMKHFSNIDSLQAWEAYQKSQVMYALLTPREAERVKWNRIVNNKGGVESNVFMDLGLEHDNHYFKEQLKGLGPNVNQTNVKRISNAFSVIHNLRKRLDGEMLVREILGSTQRRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IG44</accession>
    <name>A0A7D9IG44_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Serine arginine-rich splicing factor 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A050259</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006192">
        <property type="protein sequence ID" value="CAB4008665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IG44"/>
    <dbReference type="OrthoDB" id="1099063at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050374">
        <property type="entry name" value="RRT5_SRSF_SR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23003">
        <property type="entry name" value="RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23003:SF62">
        <property type="entry name" value="SERINE_ARGININE (SR)-TYPE SHUTTLING MRNA BINDING PROTEIN NPL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="98"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="196"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="6">
        <location>
            <begin position="115"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="216"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="259"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4008665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="31379" checksum="64DEE26AEECFC7DE" modified="2020-12-02" version="1">MSRERDSMFRGNNNDCRIYVGNLPEDCRERDVDDIFYKYGRIADIRIKRGDASRARSSRRGENLSYAFVQFEDSRDAEDAVRGRDGYEFDGRRVRVEFTRGSQNNRRDGGRSRGNSGGYGGGRSGRGVPPRRSNNRVLVKGLPSTGSWQDIKDHMREAGEVLYAEVYGDGSGIVEFAHSDDVKYAIKNLDDTEFRSHEGETSKVTVTDDSGSGGGGRKRSYSRSRSRSRSRSGKRSRSRSKDRRSRSRSKSKSHDHSRSRSKSPAKSHSRSRSASPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRW2</accession>
    <name>A0A7D9IRW2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">von Hippel-Lindau disease tumour suppressor beta domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034011</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007309">
        <property type="protein sequence ID" value="CAB4011904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRW2"/>
    <dbReference type="OrthoDB" id="413400at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.780">
        <property type="entry name" value="von Hippel-Lindau disease tumour suppressor, beta domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024053">
        <property type="entry name" value="VHL_beta_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037140">
        <property type="entry name" value="VHL_beta_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036208">
        <property type="entry name" value="VHL_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01847">
        <property type="entry name" value="VHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49468">
        <property type="entry name" value="VHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="von Hippel-Lindau disease tumour suppressor beta" evidence="1">
        <location>
            <begin position="109"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30833" checksum="F7558F4C258BE4BF" modified="2020-12-02" version="1" fragment="single">MATYKNCQRYQKKFGNTIPSQLVKLIDLRAYKAECEIRSSTSLRTQESQLERTGLKKLGVTMDRLVILLFAVCVIFSVEGSIDKLLKIKREASLSSRLSQDTTSDVHSRARRSSKSSYIFFDNRSGRTVQLWWRRGKQWQKFVQLGAHKTIEINTFVSDKWRATDAETNEVFVINNKKKYRPKVNTEDTRAVCIIKRNGQRDTDIKAYIETLVVLDKTVRDQFDSDSEAEKYVEVLLMLSSNAYKHKSLTQHGLKVDIVPSQIVILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWF9</accession>
    <name>A0A7D9IWF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008515">
        <property type="protein sequence ID" value="CAB4014959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWF9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="35332" checksum="B76052A93F72F1F8" modified="2020-12-02" version="1">MLFNIYINDLPMVPKNGNLKYYVDDSKLLLSFSVNEVNSAAAKLNEDLRRVVSWCSLNSLLINPNKTKLLVFSTRYMLKQIPADFHILLLGKKLFPVTSATDLGVTLDSVLTYDEHVTKLVSSCVGSLCQINRARHLFDMKTLILLINALVFSKLYYCSTIWSNSSKKNIAKLQKVQNFAARIVTGTKKFDHITPSLKQLNWLSVNYMLRFRDTVMAYKCVNGMAPSYLCRMFQTRSQLHNLNTRSSELLEIPLYRTATGQRSFRYRASCLWNSLPEWLKDHNLNLERFKSGLRSYLVQQFLDEQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J771</accession>
    <name>A0A7D9J771_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A032527</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012430">
        <property type="protein sequence ID" value="CAB4023304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J771"/>
    <dbReference type="OrthoDB" id="5982507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="207"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="160"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="279"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="41"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="227"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="42935" checksum="37F0C61DFB5C8D05" modified="2020-12-02" version="1">MDKVASNIPAVNGPTLPRCCGHRRSSSLPVPPAVQGTKLSNRKENADQQNGKEHEGINSVDLNGLVDTFNQISESLSRPAKILLEILDKKNGNVEHSNECEQGMGHDASDGLYFGERIETTLKQLNTIQGNLKHVLPHMETILKNYKTIKERTQSRDEMLKTLDKALRRSEGRSRALRDELQDLRDENKCLREKAQQNESILRFLNTDKTTDSGGDKRIKHNDKRSSINGLEQVNGQDSGDTLYARDDQKIKDLSAKLEHYQKVLCDYETQLQEVVLSNKELLLKINERESEVMNLNCELLKHQETLSVYEQGFKNLSTDNNQLDSVLRDERKRAAELSEKLDDAEGYISCITDKVASYEVELKYLRQELRKRDKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JKV8</accession>
    <name>A0A7D9JKV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A044377</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017984">
        <property type="protein sequence ID" value="CAB4031915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JKV8"/>
    <dbReference type="OrthoDB" id="8061593at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4031915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24944" checksum="A00326A6E9F805F7" modified="2020-12-02" version="1" fragment="single">MAWALSFPSQKRGGEEYVVAYASRTLTAAERNYSTTEKECFAIEWTVNYWRPYLLGKTFEVITDHQSLTWLQGLNAPKVDEGMNEEMRVGAAATYEVIEQLNKTKGEAESEEKLKQNGELKRYRQLWTQLIMLDGILHRRVDQGTPEERTVLVVPQKMRTDLLKLAYDDPGSGHMEINRCVERLILQQNYYWPGIASEVQLWVAECEQCDYIAVIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMU3</accession>
    <name>A0A7D9JMU3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">2',3'-cyclic-nucleotide 3'-phosphodiesterase</fullName>
            <ecNumber evidence="6">3.1.4.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A070443</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Catalyzes the formation of 2'-nucleotide products from 2',3'-cyclic substrates. May participate in RNA metabolism in the myelinating cell, CNP is the third most abundant protein in central nervous system myelin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a nucleoside 2',3'-cyclic phosphate + H2O = a nucleoside 2'-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14489"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:66954"/>
            <dbReference type="ChEBI" id="CHEBI:78552"/>
            <dbReference type="EC" id="3.1.4.37"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">Exists as monomers and homodimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Melanosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the 2H phosphoesterase superfamily. CNPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.37" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020018585">
        <property type="protein sequence ID" value="CAB4032663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMU3"/>
    <dbReference type="OrthoDB" id="3231855at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004113">
        <property type="term" value="F:2',3'-cyclic-nucleotide 3'-phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009214">
        <property type="term" value="P:cyclic nucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1740.10">
        <property type="entry name" value="2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008431">
        <property type="entry name" value="CNPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047325">
        <property type="entry name" value="CNPase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10156">
        <property type="entry name" value="2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10156:SF0">
        <property type="entry name" value="2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13671">
        <property type="entry name" value="AAA_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05881">
        <property type="entry name" value="CNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="LigT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0488">Methylation</keyword>
    <keyword evidence="9" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-0636">Prenylation</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="16">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="16">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="16">
        <location>
            <begin position="28"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="16">
        <location>
            <begin position="46"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="16">
        <location>
            <begin position="62"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="16">
        <location>
            <begin position="76"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00045937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4032663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="410" mass="46906" checksum="463CBD9DC540048F" modified="2020-12-02" version="1">MSQSHWRQRGRGNPSRGSHGRGQHRHASQNSQGNEHETPFTNSEKGGSFYRGRGRGFSQRGRGQHRRGNRGHHSSRGTSGDVSSSYRGHRDMQGGRSTPKPQQKFLDFPFIEHHETVRLLPQFRVMFILRGLPGSGKSTIADAILQQYRDHAIVCSADYYRYNKDGEYVWHEDTLQETHNKCQRRAERFAALNKPVLIIDNTNVTHSEVETYINLAKQYGYVVVLVEPKTPWKFEARQLTARNTHNVSFTKICRKVGQYDEILPLYFGWFVSPADYTRLQTTAKDILWKCLQISDFQQCIKAFSGHSYPKFTVHNALSYYSIKHSDRQDYHVTACFSPRGKYLAGSPYHKSPAVGKALGEISQLSIIGCVITNDTFSARVSLTKKQRALWMNDNQTGQQQRKRGTCSKTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JX33</accession>
    <name>A0A7D9JX33_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SGNH hydrolase-type esterase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087907</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023085">
        <property type="protein sequence ID" value="CAB4037442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JX33"/>
    <dbReference type="OrthoDB" id="5987456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00229">
        <property type="entry name" value="SGNH_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="1">
        <location>
            <begin position="37"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15041" checksum="8F50401FB37048D0" modified="2020-12-02" version="1" fragment="single">MAVSSTSNDIPKVLILGHSFVRRLRSDLHARFDEGAAKNFDLQGTAEIFMHGVGGRTVPKLRKMDMGVITRISPDIVILDIGTNDLALAPPEVVGSDIEELVRSLVAEYSVRAVVLCQVTPRATNKGSNFNERAKLLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K140</accession>
    <name>A0A7D9K140_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037562</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024873">
        <property type="protein sequence ID" value="CAB4039033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K140"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20136" checksum="B4868D4FD2FC60EA" modified="2020-12-02" version="1">MNNIMFKTKNTSEILQQEELNIVDALELAKAKVTSLERINNKETEMNDMIEAAVLYAKTSFQIDAKEECTRSHREQDAADIGCYRPYSPRSAGSFARAIAEIIQKLAEMFPNEVDADVLEAELEVFRNIVDHKEELKNGSMNNIVQFAYEQRKTLPLTWKAYQLMLTAPISVAKDVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K4R7</accession>
    <name>A0A7D9K4R7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A007661</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026763">
        <property type="protein sequence ID" value="CAB4040422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K4R7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20584" checksum="7293A84103C768D5" modified="2020-12-02" version="1" fragment="single">MNKRSSGSDRPRSARLRRRPSIPQDEHESIAQCFEGEQSELTNKKNTKSKPELNLLETSNRLCITNRILGRENEKVNHALTVPSSMELRPEAKNANFVNYYQRGEREPPKSPRILPKLEKNSARKAIPEERPPPGKIEAPDFSMFIDKKKRVDRGSLQLGKQYSVLPNISHTNEEGGDVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAW6</accession>
    <name>A0A7D9KAW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A018396</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CRT-like transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033149">
        <property type="protein sequence ID" value="CAB4043777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAW6"/>
    <dbReference type="OrthoDB" id="264057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013936">
        <property type="entry name" value="CRT-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31326">
        <property type="entry name" value="PROTEIN CLT2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31326:SF1">
        <property type="entry name" value="PROTEIN CLT2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08627">
        <property type="entry name" value="CRT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4043777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="36817" checksum="DBD6B82A43794A6A" modified="2020-12-02" version="1">MGTSENNDDMVPLNSLPEEKHKTIGLGPFKVNLILANIFFAFLAVGGEVGQNVTLPLWIDSSIPPPSGHLVHNSFNHTNDTGHLMRNGYSTNHINSSSGSGDVYQPRVDAFFVYTFASMAFVMLFGGALLFIRLFQPHLLGETERRFPHSQLFLVGLFDALNGTLVVYASSGRRTAPYLQAILGNFMIPLIMAFRYFILRKVPTLRKFSCAMIVLVSLFICLIPKIFPSIDPEAARFGGASGVAGFLWPLCFMFGFIPMALMNVIEERGLKMQDSLSEQQVNIVFFLFWSSTYELFVFLSIFWLDFVPVFGYADNFTHFLDKYVHQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2Y3</accession>
    <name>A0A7D9L2Y3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035239</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011980">
        <property type="protein sequence ID" value="CAB4022440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2Y3"/>
    <dbReference type="OrthoDB" id="2325716at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080008">
        <property type="term" value="C:Cul4-RING E3 ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051191">
        <property type="entry name" value="DCAF12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19860">
        <property type="entry name" value="DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19860:SF18">
        <property type="entry name" value="DUF4062 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="32798" checksum="1F5911AC97125AE1" modified="2020-12-02" version="1">MCLIPGERGSGASAILSNWLKKFIRDHPRIVVISHYTESGQRSAEITSFMRRCTSELRSEYRGLNPIIQLDFLDLTDFDTITEAFHASLSLGPCVLALDGLYHLTACQDIAAHVIKQLSWLPINIPPACRVVVSTTRSDISYKYLSSRSDVHLINIPSLNSNDKSRVLHEWCGLHASYLNSRDEATILAGKLSGRPVYHAVLANEIRLHGRAEIGERLLEACTRARCLSDFWTAVIHTWSQDYSWLKPNTVKNGVPVKTQVSKDRFNNGWIPDTLRLLAVSREGKLLYLPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L9Y4</accession>
    <name>A0A7D9L9Y4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071521</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014052">
        <property type="protein sequence ID" value="CAB4026177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L9Y4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33244">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33244:SF3">
        <property type="entry name" value="PEPTIDASE A2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="125"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="27846" checksum="A12DB78C1CA3CDF0" modified="2020-12-02" version="1" fragment="single">MARKLKDNIPMLPSQLKPRLVDSKIVREDIMKRRIQSKIQYDKKASRPLKDLAVDDRVYVKPRQKRNPWIYGKVIERPDERSCVMQTPLGLVRRNRKHIRKIKGESSEHQVRNEQFMDIVSLPDIDSDVTSSSNNTVDPDEERAGNAEQVSGEDLVSLRRSERVRRPPLRNKRPISRNFLSDLQIRCCWRDGAFRGGHWSKALCYGGNASNNTLQLPLTINRLIQDAIQREKSNRRKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQB6</accession>
    <name>A0A7D9LQB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A057435</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022854">
        <property type="protein sequence ID" value="CAB4037225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQB6"/>
    <dbReference type="OrthoDB" id="5964945at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4037225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="21208" checksum="250491B47C46B058" modified="2020-12-02" version="1">MANRRFQIITDHKPLLGIFKTQKSATPRMDRWKLRLMPYNCQLEYRPGKDNPADFMSRHPKPVNFINETENLAEIYANYVCSNAIPKAMTREEVKLETKLDPLLQKVVTAISLNNWTDPSVERYRRFQDELMVCDEVIFRGNRIVLPQSLHNRAIELAHLGHQGIVKTKQHYLREKVSRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M1U4</accession>
    <name>A0A7D9M1U4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087669</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030035">
        <property type="protein sequence ID" value="CAB4042392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M1U4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="9748" checksum="AAAE97199D7A1CA7" modified="2020-12-02" version="1">MLLSANLPVMEARNKPGLAFLGDMINVLSTLKEEIKSTPTGIAESQTTVVETKTVLSCIQTLPDGMMRAVVVAMILSVKSNFDDVMSYLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M5J8</accession>
    <name>A0A7D9M5J8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025411</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035088">
        <property type="protein sequence ID" value="CAB4044480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M5J8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="77"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="13913" checksum="C3CA9EEAA0565E8E" modified="2020-12-02" version="1" fragment="single">DALSITWYCKSKTVLFQGPRGSEVADSLKKNIDALRIAIVKDAELIIATPAVSERRNESIDNQCSLSINNSNSNMFDRSSNTTTTINRSDSDASEGKANEKEMCSHKQNEGDYIMNCKDCSKLSVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MC00</accession>
    <name>A0A7D9MC00_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">High-affinity choline transporter 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A061895</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036771">
        <property type="protein sequence ID" value="CAB4044898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MC00"/>
    <dbReference type="OrthoDB" id="546820at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005307">
        <property type="term" value="F:choline:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008292">
        <property type="term" value="P:acetylcholine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="entry name" value="Sodium/glucose cotransporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052244">
        <property type="entry name" value="Choline_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45897">
        <property type="entry name" value="HIGH-AFFINITY CHOLINE TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45897:SF4">
        <property type="entry name" value="HIGH-AFFINITY CHOLINE TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0915">Sodium</keyword>
    <keyword evidence="6" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="2" id="KW-0769">Symport</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4044898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19034" checksum="E0425C1B8345921A" modified="2020-12-02" version="1" fragment="single">ASEREVIWVIRLAIFGVGALATIMALKIQSIYALWYLCSDLIYAILFPQLCCVIYVQDVNTYGALLGYIMAVILRVGGGEPVIKLDPFIKYPYYNETDGQLFPFRTFAMLCSFATIILVSYATKFLFEYKRVPKRWDVFQCFPNEEDFHTVDLPSKDGVKLVGVTKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FTH8</accession>
    <name>A0A6S7FTH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000168">
        <property type="protein sequence ID" value="CAB3979096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FTH8"/>
    <dbReference type="OrthoDB" id="5967284at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="316"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="489"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="569"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="624"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="730"/>
            <end position="749"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="178"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="207"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="242"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="316"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="503"/>
            <end position="512"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="569"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="584"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="638"/>
            <end position="647"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="658"/>
            <end position="668"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="736"/>
            <end position="745"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="863" mass="99406" checksum="E6A089363CC1A62F" modified="2020-12-02" version="1">MPSSSELSGISGHQIVPGVFSLGSRGYEAKTGAIEDLHAPGRVQDIPRVRAVHPPPPAHPFYMPFLQRPTMPDSMYLPPFPYYPPTMMDASGMLPPGFDHEAWRKRRALEHMRQQHERHAQFFSPHDRPLYIMEQDHMKPLSVQSSMSQRPYPGDLPPRGENNLGKSSPRLELITPSDPRSTASTMPKETVKTPEVLGSRSPRSEQLPVSSSLMRQPGSSTTPVIMSTAHSPGGHPASLRSPSREAPPHGDEREGENIKDGKQREHQIMWTRRMFEQKRRLRQEEIEWQHRQQQVRQQKREVQQELFQFRQKLLQQKELEKDDSPKKEQDRGDQREDLNEGMRERGKDGQRMSPENKMGLPQYGYPPMYHESPQPLHMSSMFGPPRLPHHEIFYPPGFLPQTPLPPRMDTRMYKEYLQQPTHFMHNNKAVSDWLEKRRHPETLLAEGKDRFINGEVSKDRHEPRKLKFMKDLGLMTVADKRDRPQTMFIGGKRKFPEDTMQDESNKENRVENGDVSAETGTKKSNISEEDTDSATYCNKVNFLSNLGLVTHRKRQELEDDFEKNRWERRHQRLQRKTKKKKKEKKEEKSRSRTPLDLDVSGPMTRQKQQLLQEYGLLLPIKDAMEKESSSSPDSSATADRDSVKSKDSPGGQAKKSKKSESPTKDETFRNTYEVSTPPPRPTTSLSSGPQLTLQSLTHMENPYRAFQSAFHPPYYHHSGLLSVHQDPTVKDPRMATESSTSSRTGSKIYPAMVPGNIGVYRGNGAETRPSWMLTEEPLKWPGTSRVIQSYLAYHQEQENELNISKEKEGKLRLENSTLSEESERLNSTYSELMMSRQKLAADQHILNGKLERLRNFMVFVQNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0R1</accession>
    <name>A0A6S7G0R1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A051100</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000644">
        <property type="protein sequence ID" value="CAB3983693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0R1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="124"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="358"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="199"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="124"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="136"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3983693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="432" mass="49439" checksum="72736CA010C507C7" modified="2020-12-02" version="1">MSNCFELQKNKLIWNGDLSELKSYVAEKLNINGKWKSPSGGRWLFTSDALSITWYCKSKTVLFQGPRGSEVADSLKKNIDASRIAIVKDAELIIATPAVSERRNESIDNQCSLSINNSNSNMFDRSSNTTTTINRSDSDASEGKANEQEMCSHKQNEGDYIMNCKDCSKLSVEVAEIKLDLALLFLKVNTAEAPATCECNRLRNENQLLKQEIKLLKETLHGMELSKSPINIAIDNMNNQPTITDNDSVILIDIEESEVNVNTNMNNLPSATYKEKQYNTRGPVVNDSLMKYRNPNKPVVQDSLTPFDHLLKEKAALNANMHRHKRNQVHNSPTNRTHFSKPNYRRNQAALNANMDRHRRNPMHNSSTNRTHFSKPNYRRNQFSEPKHQYRQANFPSKIFRSGRYRWIPKPRTTADYTDTRASQIKSTRHTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4G0</accession>
    <name>A0A6S7G4G0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GRB2-associated and regulator of MAPK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029449</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001076">
        <property type="protein sequence ID" value="CAB3986808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4G0"/>
    <dbReference type="OrthoDB" id="6021761at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09487">
        <property type="entry name" value="SAM_superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052281">
        <property type="entry name" value="GAREM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001660">
        <property type="entry name" value="SAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14454">
        <property type="entry name" value="GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14454:SF11">
        <property type="entry name" value="SERRANO, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00536">
        <property type="entry name" value="SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00454">
        <property type="entry name" value="SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="160"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="166"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="32605" checksum="922DD2C6FBC045E3" modified="2020-12-02" version="1">MDAVKKRMEDMAKDLSVEDASWDILEHARGHLAHVERQTSVKAHSFEKLPKLPPRGRQLSTGDKPPPRPPKPGRKPDPKPQKNPGSMLKRWPYKLHEPHELLEPHKLLEPHEPDGIYASIDDIYEETISQSSVSEDYDASGYTKLDSAYISVSQKPNAKLLRNPSKSEQTSSIQSSPLAQTTRLPAIQSIPLPSTPQTLPIKLPPQTKEDKEAIYEAISRFPQDLSGLGVADVSRLLGHLNLSDYMQTFENELIDGTMLVSMDQDSLKSLGVKPFHCKKLLDFIGGWRPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8W5</accession>
    <name>A0A6S7G8W5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041458</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000875">
        <property type="protein sequence ID" value="CAB3985462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8W5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="26916" checksum="A3A9D75B40A3DB51" modified="2020-12-02" version="1">MGNKVSNTSRDLDRIKNKQHQGHGESNLSKWKSSKNPVAEPQSIDANPSKHGKGADPVENNRKPDTQEVETLKTTTVKKSLVQKDRAQAEITQGGGQLNAPNESGNKVTGRNTIHENNETNNVNDVQFVGVERQKIKRVFLGGIREGVSSEKIREYMMKRNINPTFVRLMQSKRKGTTSVRINFVAKDFDVVKETPFWPDGVYARPWLSLAKWQDRLSTKEPQLLDRTHRSKPETNST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA51</accession>
    <name>A0A6S7GA51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">WD repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A020279</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001392">
        <property type="protein sequence ID" value="CAB3988838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA51"/>
    <dbReference type="OrthoDB" id="2096344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041452">
        <property type="entry name" value="APAF1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848:SF8">
        <property type="entry name" value="F-BOX AND WD REPEAT DOMAIN CONTAINING 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17908">
        <property type="entry name" value="APAF1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="1">
        <location>
            <begin position="2"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="APAF-1 helical" evidence="2">
        <location>
            <begin position="198"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="729"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3988838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="729" mass="81679" checksum="597DF8016559DFA3" modified="2020-12-02" version="1" fragment="single">SDKDCLVVLDDVWSVDDVAVFDHLSGKCQLLITTRDAKVVRSSKGFVYELQFMAQDKSRALLYQSAGVEPDELSTFSPEMHQIVKELLKQCRGLPLALSLVGSNLIDTRLQQDWQDVLGYFQNAGLEQLHSQFPTVTYPYDNILAAIDASFQRLEKNEREKFLDFGPELQGKTSYRVHDLLLEFARQKLQASGTLADVQRVFVKILRGQCVNGEWTTTSSLSQRDYYFKYLPYHIFSSEQQSELIQLLFDFHWLEQKVKHTNFPSLISDFRFLDTPLQHEIKLLKKSLMLSADAIEKNPSSIGPQLLGRLLSYASDECPSVKKLLDDVRETSRKTCRLLPLFSCLKLEGAEIFKKNVGSQVWSLATCTTSTGTIVISGLHNGSIRIHELETGKELQVLEGHTNTVWCLALSHSQRHLASGSRDNTATIWNTDTFEQLKVLQVEGGDVNALDFSTDDQRLFTGSQDGKLTVWRVSTGERLDVIPAHDVAIMSLCTTKDGLYIATASWDHTIKLWRADTLNFEATLVGHTDVVGSVVAAGNDNPMLVSASWDGTLKIWDAKKHKEIHTLRGHEGKIYSVAVSSDTKRIISGGQDMIMRLWCFHTGELLSCFEGHSRPINSLSITSEKFKAVSGSSDGSFRVWNLDTSAHLKQDRSRGHSKSVIDIAVTHDGSRCVTASFDGFFKVWMCENEKECFTLKDLKGYPVNVAISADDRHVVSLSSNSSSSSIKVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCR5</accession>
    <name>A0A6S7GCR5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Adenylate kinase</fullName>
            <ecNumber evidence="6">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP-AMP transphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">ATP:AMP phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Adenylate kinase cytosolic and mitochondrial</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Adenylate monophosphate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A033666</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. Adenylate kinase activity is critical for regulation of the phosphate utilization and the AMP de novo biosynthesis pathways.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>AMP + ATP = 2 ADP</text>
            <dbReference type="Rhea" id="RHEA:12973"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.3"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
            <location evidence="6">Cytosol</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Mitochondrion intermembrane space</location>
        </subcellularLocation>
        <text evidence="6">Predominantly mitochondrial.</text>
    </comment>
    <comment type="domain">
        <text evidence="6">Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the adenylate kinase family. AK2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020001408">
        <property type="protein sequence ID" value="CAB3988933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCR5"/>
    <dbReference type="OrthoDB" id="439792at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005758">
        <property type="term" value="C:mitochondrial intermembrane space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:AMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006172">
        <property type="term" value="P:ADP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046033">
        <property type="term" value="P:AMP metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046034">
        <property type="term" value="P:ATP metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01428">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000106">
        <property type="entry name" value="Adenylate kinase mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00235">
        <property type="entry name" value="Adenylate_kinase_Adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_03168">
        <property type="entry name" value="Adenylate_kinase_AK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006259">
        <property type="entry name" value="Adenyl_kin_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000850">
        <property type="entry name" value="Adenylat/UMP-CMP_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033690">
        <property type="entry name" value="Adenylat_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007862">
        <property type="entry name" value="Adenylate_kinase_lid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028587">
        <property type="entry name" value="AK2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01351">
        <property type="entry name" value="adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001380">
        <property type="entry name" value="PRK00279.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001381">
        <property type="entry name" value="PRK00279.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011100">
        <property type="entry name" value="PRK14527.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23359">
        <property type="entry name" value="NUCLEOTIDE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00406">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05191">
        <property type="entry name" value="ADK_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00094">
        <property type="entry name" value="ADENYLTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00113">
        <property type="entry name" value="ADENYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 6" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="NMPbind" evidence="6">
        <location>
            <begin position="95"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="LID" evidence="6">
        <location>
            <begin position="191"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="200"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="75"/>
            <end position="80"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="122"/>
            <end position="124"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="150"/>
            <end position="153"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="201"/>
            <end position="202"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_03168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3988933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="31066" checksum="197B6FF43693165C" modified="2020-12-02" version="1">MTSLRRHSAVQRSVSLNMAATSSVQNGWLGKLFVRFDPGRGKSEAPIVEDLIRKSGLSSASCDEGTRGILMGPPGAGKGTQAPKLAEKYCVCHLATGDMLRAVVASGSDLGKKVKGVMDSGQLVSDDLVVELIEDNLNKPECKNGFLLDGFPRTVTQAEKLDGLLEKRKANLDAVIEFAIDDSLLVRRITGRLFHKPSGRSYHEEFNPPKVPMKDDVTGEPLVKRSDDNAETLKKRLESYHKQTTPLIDYYQKRGLHQKIDAAKSPDEVYKSLLAAFKKAKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHL5</accession>
    <name>A0A6S7GHL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050008</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002154">
        <property type="protein sequence ID" value="CAB3992934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10688095at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="198"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="312"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="589"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="696"/>
            <end position="730"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="773"/>
            <end position="796"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="802"/>
            <end position="821"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="967"/>
            <end position="988"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1294"/>
            <end position="1351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="41"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="204"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="253"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="321"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="589"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="612"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="978"/>
            <end position="988"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1294"/>
            <end position="1333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1336"/>
            <end position="1351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1429" mass="153596" checksum="CFCA1014C8BFAB67" modified="2020-12-02" version="1">MMRKGKDLPSSSVKGTSRIPKPVSGNNSKVEEQDGSKSRNLRSNSRSTSSTRPIRINRDCLKGIRTTPDRVVKRTRPFIQKLNSNGGSNATSPTSAIKLRVPASSVIKPRAPVPRITTHCCVKPVISQTTTQSTRVLRSHAVSTSSVQSSKTDSSAVAKLSTTSTPTSTRILRTRALSSRDAVTTNIPKFTWNLRRRSSVSKTTKGDETKPLCKHGAGKEAEGTTVAKRLAPAKDASLCSKQKKQEAPLVNTEQKKSHKVLEVKQSQPQQQPKKVDLVLSKEENHHDELKFSKPCLEKVEIKTLVVSQGKALGGAKHEEPASQQAEAQLNKHQPTTNKSESKQELDLKKFGITPVLVTAKPLVGEPYLEERPLTPEISEVKILGKDTEERLSDDAEEIPSVQTAPEPALATKLLVGEHSLDERPVTPEVFDVKSLAKDTEGKLSQVAETISSAKTSTPVLAKELSGETVAHAEVEASEVPRTPLAKDVPEKHLLGSIETPLAKELQATVEASPLGKDQPSSDEKPACQVEIPPVTKQKCEEKSFRDDIPVVKTRLEEQITLTTSEVILQNCRGEPSIVVADLPPVKTTEASNVLEGSQTTSTKPSKPPSHVETAKLEDSKLSENPKAELQFAGKRKCEENVSDNTRAVKSRLENEITLKTSEVFLQNCRDVPSITVADISSVKTPALVEAVDQLQAEKSSKSLPAEPTTVVKEQPNPVTTSARSKPTGDACEQLTDAEKIAASQDNPTLSESLASSENAKSLGQSFLGEARTELVHQRRSKSTKRPAGQPITNDLLTKKRRSLSAENGQHEPSPFGLPLQADSSQTMDIGRVTPAASNQSMEIDTSGILPFVFRFPSALNTPNGLNSSDDMELCDSGSSQIILSPFGINQQFVRSVFGCQTFGFTSQPTGQPRFGVNQATSQPFSFGSSQAQNSLQTGPAVNGFNASTFGNVPGLAQATNQAQQMFGSVPRAPPLPTTGFNQTGSKVFGNQSLQNNQQLFGVSFNHPPQTFGNIPKAPPLPAGILKQSGNHVFGSVPQPSAMFGNVPKAPPLPIGGFNKISNHHFTFGSAPLQTNQPLPMSGVSFNQANTPQIFGNPPVLNIRPTLTNSDGSRRKFIFTKGCKRHNVAKPPLSLNQTGNQPTKVFGNAFQPSPQHVFAGFSMVQSPTPMESEDVSNLSGNGHLVGGLNNQPSNVWNLFGQKNGGNQVMFDCGQTSTVFGSLQSTPGQHLSDHSMEESVMLPHRTTVSCFTISITQTSPQRTLSLPQMAGTSAVGGPSPLSILKPSMFAGTSFTNSVSPTGIPRETSTNISCETPTTRETSTNISCETSTNSQESEVEPRKETKPSGDEEHKTTLHKIFSSVSSLNSTCSNLSDCQSEIDALIDILSDSISNCSLEDNPAPTDMGELVEKFKTLSLADKPLDSDAKASEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJB8</accession>
    <name>A0A6S7GJB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Maestro heat-like repeat-containing family member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A068695</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001538">
        <property type="protein sequence ID" value="CAB3989712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJB8"/>
    <dbReference type="OrthoDB" id="1884734at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055408">
        <property type="entry name" value="HEAT_MROH2B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045206">
        <property type="entry name" value="Maestro_heat-like_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056282">
        <property type="entry name" value="MROH2B-like_N_HEAT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23120:SF0">
        <property type="entry name" value="MAESTRO HEAT-LIKE REPEAT FAMILY MEMBER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23120">
        <property type="entry name" value="MAESTRO-RELATED HEAT DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23210">
        <property type="entry name" value="HEAT_Maestro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23221">
        <property type="entry name" value="HEAT_MROH2B_1st"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="MROH2B-like N-terminal HEAT-repeats" evidence="3">
        <location>
            <begin position="37"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="MROH2B-like HEAT-repeats" evidence="2">
        <location>
            <begin position="259"/>
            <end position="728"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="735"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3989712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="735" mass="83101" checksum="A7D4535863B7738C" modified="2020-12-02" version="1" fragment="single">MTEHKKTGAQVEDMVMALVDAANDKDKSVTEMVRSSLYAIGLEKPELVLSLCKDYILKHQKLSKEHRVVLLESMGKIISDKRDVIQADLAKELLKLAFQEMTKSKDIQPKWQTAASDLIVSVGKKFKHEVMSELLENLVPGTLPHYFVILTLANFAQADAFALVPFLKDILGRLLPMLLLTKQDNMKWVFAHCFSRFSESVTYYLANVESTSHNDIRQNTFEGEMLSAYEILFNVWIKSNEAKVRLSIIEAIGYMSHLLSREKLEEQLPRLFSGINSLYRKHPPAQFYTITQSFCRILEAAISDGGDMLALHLDHLLNDLYDKACVMPDFSNPGTVKNCNEVLRCFDTLCKVFSDRIISHLLLKLEKSGEKGRLGSLSVLKQLVNSSGSYLENKKPLLVTGVQVVITDASPKVKQMFAQLIAAMAHHGYLNLEGGQRLVEFIVKQCAVNVDEEKPKKSSEGDSPSLKSIQSMCENILRLITTTIEKMESVLWPYLLEFLVQDEYTNAICALCQNLCYLAGKQRERDSENFTIDFVELVNLPKPVPILARLLVLGGHPLAGKERGTHVLGLLKLLSPILHPEIEELWDTVIPKLVQYVEENKENEEEWNQKSWENLLLKFFSKTLDEVEDEEWSIAVGLELGNQIRLYTNQSEDKNFLYKCVGVVMKVVTKKDFIQSQLSVIFSSTKHSDTDEKEGCAMAFGFCASNNLDAVLLKLEQITKNEMVPKSSGFLGLMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMX6</accession>
    <name>A0A6S7GMX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031941</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002170">
        <property type="protein sequence ID" value="CAB3993025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMX6"/>
    <dbReference type="OrthoDB" id="10464057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="284" mass="31501" checksum="162D56A1B0DFCC08" modified="2020-12-02" version="1">MASPTSQLLINEGELNEILRIISVAKDAELKIVGNLFGLWRHSLMQPVVHLITGPGERSTISKKTFSPDGVYHLGMKKYLEQQHGLLQIGLWCSGNSNRYPSLNRGHPDYDLYNPLMPEKGRYVVLMFVDNHTKGNLEIEYQIIDREGQQSSRVASLTTRDVLPGASSFRLLEPVFEKINQPGVKFPSQRHQYTGYFSTNMLPTNDHQPPAKITPSYSNITPTNGNAYVIPTSAYVIPTNAYVTPSKAAAVPASMGRLSQSHESDGGDSLFKSLVDGFKSTTYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GN73</accession>
    <name>A0A6S7GN73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019628</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001757">
        <property type="protein sequence ID" value="CAB3990936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GN73"/>
    <dbReference type="OrthoDB" id="5984134at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="27812" checksum="52D224B1B007C156" modified="2020-12-02" version="1">MQAALTKWPVKGTTSSVNRLNGEVKHLEVKKLQNFSSFHNFCYTKDGVTIWKAYGVGEEKYIPNKKIYITHQEATQLNISEMFPPVSIPSRPQVISEDDRESGNEEATGLFDCPELNCNYVFESLEELELNIGLGQHSCFINNENVYDTLRREWALRYTTVSTNLSSDPSMESPLEQGNDKLKMGWALAKQLCGKVLFSPLVLQYLMAKFDYGERTGQKYDAVQVALDMRCARNECGGKKNRSDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GR78</accession>
    <name>A0A6S7GR78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028867</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001125">
        <property type="protein sequence ID" value="CAB3987140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GR78"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26952" checksum="97D49C844F5B1601" modified="2020-12-02" version="1" fragment="single">MEELKEKYPNYEEMDIEALDSELPYLDEDLRESETTEETQDINEEINYVLELRRRREIPSEDPSREQSNLSYDDLMDRGDRLLNELILSNLDEDSFKEKSEELRYVRMLSNDYQRESNLNKLLNLRDKVKKRDLIKRDGLRRLQRLRLWARENAGVLSAVLISSSAVIIGLVASTRNILWKAGDTTGKLDKRISELVNNQIELPPVFQKIADGVELAADNIWIIIICAAAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GS18</accession>
    <name>A0A6S7GS18_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">3-hydroxy-3-methylglutaryl coenzyme A reductase</fullName>
            <shortName evidence="11">HMG-CoA reductase</shortName>
            <ecNumber evidence="11">1.1.1.34</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A051847</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(R)-mevalonate + 2 NADP(+) + CoA = (3S)-3-hydroxy-3-methylglutaryl-CoA + 2 NADPH + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:15989"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36464"/>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.34"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="10">
            <dbReference type="Rhea" id="RHEA:15991"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Metabolic intermediate biosynthesis; (R)-mevalonate biosynthesis; (R)-mevalonate from acetyl-CoA: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Endoplasmic reticulum membrane</location>
            <topology evidence="1 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the HMG-CoA reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.34" evidence="11"/>
    <dbReference type="EMBL" id="CACRXK020002490">
        <property type="protein sequence ID" value="CAB3994563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GS18"/>
    <dbReference type="OrthoDB" id="310654at2759"/>
    <dbReference type="UniPathway" id="UPA00058">
        <property type="reaction ID" value="UER00103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005778">
        <property type="term" value="C:peroxisomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004420">
        <property type="term" value="F:hydroxymethylglutaryl-CoA reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015936">
        <property type="term" value="P:coenzyme A metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016126">
        <property type="term" value="P:sterol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00643">
        <property type="entry name" value="HMG-CoA_reductase_classI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.420:FF:000001">
        <property type="entry name" value="3-hydroxy-3-methylglutaryl coenzyme A reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.770.10">
        <property type="entry name" value="3-hydroxy-3-methylglutaryl-coenzyme A Reductase, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3270.10">
        <property type="entry name" value="HMGR, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.420">
        <property type="entry name" value="Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002202">
        <property type="entry name" value="HMG_CoA_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023074">
        <property type="entry name" value="HMG_CoA_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023076">
        <property type="entry name" value="HMG_CoA_Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004554">
        <property type="entry name" value="HMG_CoA_Rdtase_eu_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023282">
        <property type="entry name" value="HMG_CoA_Rdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009023">
        <property type="entry name" value="HMG_CoA_Rdtase_NAD(P)-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009029">
        <property type="entry name" value="HMG_CoA_Rdtase_sub-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053958">
        <property type="entry name" value="HMGCR/SNAP/NPC1-like_SSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00533">
        <property type="entry name" value="HMG_CoA_R_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10572">
        <property type="entry name" value="3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10572:SF24">
        <property type="entry name" value="3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00368">
        <property type="entry name" value="HMG-CoA_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12349">
        <property type="entry name" value="Sterol-sensing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00071">
        <property type="entry name" value="HMGCOARDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55035">
        <property type="entry name" value="NAD-binding domain of HMG-CoA reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56542">
        <property type="entry name" value="Substrate-binding domain of HMG-CoA reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00066">
        <property type="entry name" value="HMG_COA_REDUCTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00318">
        <property type="entry name" value="HMG_COA_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50065">
        <property type="entry name" value="HMG_COA_REDUCTASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0521">NADP</keyword>
    <keyword evidence="8 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="42"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00049909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3994563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="638" mass="68119" checksum="4E27C9D86722873D" modified="2020-12-02" version="1" fragment="single">EDVHHKIAEGSARIGPTLTLNTLVEVLVIQIGTYSGVKSIEILCILGVVAVIVNYLVSISFVPAALSLYAELSHVDGSTREGQNLEEDINETGHVSNPVVQQVKMIMSLGLAMVHVHLYMSCLKQKTSLILGNFSSDNFFGLPNMSTEQVVTVTLALIFAAKYIFDNDYVRTRTRTMNGTIPNGTLINGDLKNATVANGHAQNGSVGNGHLQNGAVSNGGYGKMNGEVSAASEVDGITIARKALFHIGEGLQEKVTALVNSATMAAKSATNDNSNLDDDTDEEILKKIESRVVAVHQLEKKLTDLTRAVKIRRMVVEKKLKNGGELNNLPYDSYDYSKVIGSCCENVIGYMPLPVGVAGPLLLDGQIYHVPMATVEGCLVASTNRGCRALASSDGVRSRVLADGMTRGPAVRFPSALQASDLKEWLSDEDNFEGVKKTFDSTSRFARLKKIQCAIAGRLMFLRFQATTGDAMGMNMISKGTERALAYLQDHFPEMEIISISGNYCTDKKAAAINWIEGRGKSVVCEAIIPANVVTKVLKTTVSALVDVNTNKNLVGSAIAGSLGGFNAHAANIVTAVFLATGQDAAQNIGSSQCMTLMEKCGPTQEDLYMSCTMPSVEVGTVGGGTVLPPQAACLEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GT49</accession>
    <name>A0A6S7GT49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Multiple epidermal growth factor-like domains 11, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A058864</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002209">
        <property type="protein sequence ID" value="CAB3993202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GT49"/>
    <dbReference type="OrthoDB" id="5948402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005044">
        <property type="term" value="F:scavenger receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.170.300.10:FF:000002">
        <property type="entry name" value="Multiple epidermal growth factor-like domains 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.170.300.10:FF:000041">
        <property type="entry name" value="Tyrosine protein kinase receptor tie-1, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.300.10">
        <property type="entry name" value="Tie2 ligand-binding domain superfamily"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002049">
        <property type="entry name" value="LE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042635">
        <property type="entry name" value="MEGF10/SREC1/2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24043:SF8">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24043">
        <property type="entry name" value="SCAVENGER RECEPTOR CLASS F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00053">
        <property type="entry name" value="EGF_laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00011">
        <property type="entry name" value="EGFLAMININ"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SMART" id="SM00180">
        <property type="entry name" value="EGF_Lam"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3993202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="393" mass="42166" checksum="4331C27AE0B1FC8B" modified="2020-12-02" version="1" fragment="single">MCFFAVCPVGTFGVGCQELCECVGGETCNHATGKCDCGEGRKGFHCEEACESGMYGKECSGMCNCPLEKRCDPITGGCLCPPGRLGKRCEQECPPDRFGFSCLEVCDCASKCDPVTGKCTCPAGKTGKNCSIGCPEGTFGEYCVHKCLCNPGVHCDAVTGRCVCPPGWKPPNCTEKCDEGMYGLDCKYRCPKCTGNHEKCHHITGKCVRVCKHGFYGPNCDIRCPCESHSKCNPYNGTCWCSLGFTGERCSEKCPEGKFGHKCQYNCTCKNDAQCDHITGRCRCAVGWIGSNCEKPCPKGWFGQLCSSPCMCKNNGTCERLFGTCTCGPGHVGEQCNEECPAGTFGLNCKEKCNCKNGGLCDKATGRCNCGLGWTGELCESECPPGRFGPNCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUV9</accession>
    <name>A0A6S7GUV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glucuronokinase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050486</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002705">
        <property type="protein sequence ID" value="CAB3995653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUV9"/>
    <dbReference type="OrthoDB" id="1924968at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047940">
        <property type="term" value="F:glucuronokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053034">
        <property type="entry name" value="Glucuronokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38710">
        <property type="entry name" value="WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38710:SF1">
        <property type="entry name" value="WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nucleotidyl transferase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="37146" checksum="937D153C5F884B03" modified="2020-12-02" version="1" fragment="single">MNDKTGTFTHLQGVPKALLPGVGGKKILDFWWDAINVRQYFTAVYLVTNADKYKHYERWATAHDFPMENIVNDGSTTFHSRLGSVADFELVLRNKNIQDDVLVVAGDMLFQDQKFDICQVINYFKTKKGELAIYYEMDESESTRSRGIIEVCPKTNKILKFLEKPEPHETESRLASVVFYCLRKETLYTVEKFLQKNTKPDQRVFGKYMEWLVTQTPVFGMKLPTGFQLIGQVGLSDYQRWVAYFAGIKNQAVKNSFSSRVYARLGLVGNPSDGFYGKTIAMSISNFWADVTITESEKLVLVPHPLNDPTQFGSLGDLHGISRKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GW36</accession>
    <name>A0A6S7GW36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061368</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001585">
        <property type="protein sequence ID" value="CAB3990017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GW36"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="69" mass="7734" checksum="44BEA39BA480AAEE" modified="2020-12-02" version="1" fragment="single">DYATFKALFDSLGKAVNHLIYYGSNTNPDNLTSSDAMKHGPKRSFSPEQEFFLVLVRLRLGLLEAEDLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXV4</accession>
    <name>A0A6S7GXV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">V-type proton ATPase subunit D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A032919</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase D subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002866">
        <property type="protein sequence ID" value="CAB3996425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXV4"/>
    <dbReference type="OrthoDB" id="7676488at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.3240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00271">
        <property type="entry name" value="ATP_synth_D_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002699">
        <property type="entry name" value="V_ATPase_D"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00309">
        <property type="entry name" value="V_ATPase_subD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11671">
        <property type="entry name" value="V-TYPE ATP SYNTHASE SUBUNIT D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01813">
        <property type="entry name" value="ATP-synt_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3996425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="27569" checksum="710A18D62E568C75" modified="2020-12-02" version="1">MSGKDRIPVFPSRMALTIMKGRLKGAQKGHSLLKKKADALTLRFRNILKDIIETKTVMGEIMREAQFSLAEANFAAGDFSYGVLENVDKAQTKVRARNENVAGVTLPLFEATSDGASAYELTGLSRGGQQVNNCKEVFAKAVNLLVELASLQTSFITLDEAIKVTNRRVNAIEHVIIPRIQATIAYINSELDERDREEFFRLKKIQEKKKIRKAKAEAEKLARGIKTSDGATPNLLEDNRDEDLLFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2F1</accession>
    <name>A0A6S7H2F1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Organic cation transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A075975</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001728">
        <property type="protein sequence ID" value="CAB3990800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2F1"/>
    <dbReference type="OrthoDB" id="5296287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24064">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 22 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3990800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="22032" checksum="CE36ACE2E6B8F492" modified="2020-12-02" version="1">MVECEYISRWVVGFRFTPESIRWYLTHNKIGKAEESLRQIAKANKKDYLEGSLKIPTVPKKNLSCLALFSSWSVTINVLIQGFVWFVIGMGYFGASYGASDLGGSMYLNFVVISLVEFPANALAIDNLERYGRKKSTIVTMIIGGICCFIVSLIPSGTDRTDYLVGRVIGGTLGKGFFTFAFDTVFVWSGEIFPTVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBV9</accession>
    <name>A0A6S7HBV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079479</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004364">
        <property type="protein sequence ID" value="CAB4002464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBV9"/>
    <dbReference type="OrthoDB" id="6005645at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="18576" checksum="3397E48EBE51E616" modified="2020-12-02" version="1">MSVGHSLDSRMIMGMNIDLRDESNMNNFVAYVLNCCKEKIREKRLEIVSLLDGDVFYNIDSWPKELRLILWKKPLSDKETCKLILFLVGNGCPPLIAYKWIITSTYWGREKTRKRWEQIRWINLNMERNMHYWFYYDMFHSKHLYLNGDERQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCJ5</accession>
    <name>A0A6S7HCJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sulfotransferase domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A077938</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfotransferase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002284">
        <property type="protein sequence ID" value="CAB3993561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCJ5"/>
    <dbReference type="OrthoDB" id="205623at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11783">
        <property type="entry name" value="SULFOTRANSFERASE SULT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sulfotransferase" evidence="3">
        <location>
            <begin position="14"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3993561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="23856" checksum="638745549F699DFD" modified="2020-12-02" version="1" fragment="single">CYKTHAWYPDCPKGAKYIVIYREPCAAFNSFFKFFEGWMFQPGEVSLHEFVKDFLLAREVPQNKMENASYFVHLISWWEHRNDSNVLFLFFEDMKDDLESVVRKTAAFIGIQDEEKIEKAVEMSSFEFMKGNQKKFADMRIARYRNVACGIPHDVVPNKVVTGSASKGRELMDDKTKEIIQGKWLEVVAKQTGFQDYNELRSAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHS9</accession>
    <name>A0A6S7HHS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040939</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004541">
        <property type="protein sequence ID" value="CAB4003107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHS9"/>
    <dbReference type="OrthoDB" id="8065890at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955:SF77">
        <property type="entry name" value="ASPARTIC PUTATIVE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955">
        <property type="entry name" value="RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="25839" checksum="C6FBFD392A137A98" modified="2020-12-02" version="1">MVANLLQNVRTALEGYNIPGTFAWSDSMVVLCWIMSTNREWKQFVTNRIVKIRKKENLQWKYCPTAENPADIGSRGCKADNLGDLWWKRQDWLANEVDWPEGSCEPKQTKEVTDEEKVVKMLSFVAIGSEVNMIQDLLNKFKLWKVIRVVAWIRRFSNNCRSKLRRSNSLVTHETQEAEKCFFKISQNGKMFENDYEDISKRLGLWVLGCKQRGEACKNTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQF7</accession>
    <name>A0A6S7HQF7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like GTP-binding insertion domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005873">
        <property type="protein sequence ID" value="CAB4007674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQF7"/>
    <dbReference type="OrthoDB" id="6537918at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="16213" checksum="81825A960A833199" modified="2020-12-02" version="1" fragment="single">VKLATQVLSTSVAIALEECGYAYVLATAKFCKMMNDFFDCTNVMSMTEYVSKRNQFVKPYTCQDDERFSWLKDVFLGYWIVGKIRQWQEMTYKGLKISVYSHIEAIQFLLAQGFQYVLSERFMQDVVEDYFGHQRAKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTD2</accession>
    <name>A0A6S7HTD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine- kinase SSK22</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066787</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005884">
        <property type="protein sequence ID" value="CAB4007707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTD2"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050167">
        <property type="entry name" value="Ser_Thr_protein_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23257">
        <property type="entry name" value="SERINE-THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34133" checksum="10C9125911862FA6" modified="2020-12-02" version="1">MDKIDGFGYFEDNFSLKIGQEISEGLAYLHSKEISHRDLKAKNILVSNQHYCHIADEEKKMKLFSESLIICKLADFGRSQQIQTAAVHSMTKRVDRGTPVYMAPKILVKSRCLKSASLEDLKKVDVWALGMVMFNLVNPDLKHPFQLDIVRDASAIEQVEEFLQLGKQSSGLNKYKTLQETTWLPIAKVHRNCTVVDPIKRPTALECGRNSLGVQKKSNHYLKNSQVVILFSSDKDKNPTQYTTCIDLTGEPSSTNEEEQRLKVLTRNKKKTSEVIDLTCHGGTDLNYARLKDLITNTSTLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUB9</accession>
    <name>A0A6S7HUB9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029283</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003262">
        <property type="protein sequence ID" value="CAB3998081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HUB9"/>
    <dbReference type="OrthoDB" id="5968890at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="43312" checksum="37FD1E2FE46FA1B5" modified="2020-12-02" version="1">MGEQNKLDEVNKVQSTKSRTKGGGARNKANYGKFKQDSTQNKACGYCGRKHKFGRESCPSWGETCNSCGKQNHFAKQCRQRRRDNTNQVKEADSSSDSEYIDSVTVKPDKISSISQQPSKEVYAKMIVRGNPVKFHVDCGATANVLPIKYLAGENIEPTDKTLQMWNKTELKPKGTCRLTIRNPKNDKKYSVEFMAVQENLTPLLGAKAIQRMGIVETHNENFEQVAQVNSGIKDTTSTQSTTTVMNRIIEEFANVFEGEVGTLEGEQHLEVDPTVQPTTAPSRRVPFAVKAKVKDELMRLTNLEVIQPVDELTVWVSNMVVATKPSGELRICIDPKQLNKALKRERYPIPVIEDVMPDIAKAKVFTKEERAEWLLARHVGRRVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HV21</accession>
    <name>A0A6S7HV21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A046159</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003474">
        <property type="protein sequence ID" value="CAB3998941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="19"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049:SF1">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="17"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="795"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="829"/>
            <end position="1376"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1398"/>
            <end position="1426"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1440"/>
            <end position="2047"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="2086"/>
            <end position="2196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="2225"/>
            <end position="3166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="51"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="234"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="268"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="324"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="471"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="541"/>
            <end position="563"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="577"/>
            <end position="640"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="654"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="707"/>
            <end position="795"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="829"/>
            <end position="1118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1125"/>
            <end position="1372"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1440"/>
            <end position="1577"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1584"/>
            <end position="1660"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1668"/>
            <end position="1730"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1743"/>
            <end position="1927"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1934"/>
            <end position="2047"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2090"/>
            <end position="2196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2225"/>
            <end position="2247"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2256"/>
            <end position="2389"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2400"/>
            <end position="2615"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2626"/>
            <end position="2841"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2851"/>
            <end position="3166"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="3166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="3166" mass="354816" checksum="6FB1A9C46639D7E0" modified="2020-12-02" version="1" fragment="single">VPHAEDKVPHTEDKVSQAEDKVPHIEDKVPHTEDKVPHTEDKVPLAKVKGSHAEDKVPHGEFKVPHGVDKVPQAEDNVPHPEDKVPGGEDKVPHAVDKVPHAEDKVPHAEHKVPHAEDKVPHTKDKVPHIADKVPHINDKVPHTVDKVPHIEDKVPHTEDKVPQTEDKVPHAEDKVPHAEDKVSHTEDKVPQAEDNVPHIENKVPHTEDKVPHTEDKVPHTEDKVPHAEVNGPHAEDKVPHGEFKVPHGEDKVPQAEHNVPHPGHKVPGGEDKVPRAVDEVPQGDDKVPHTEDKVPHAEDKVPHAEDKVPQAEHNVPHPGHKVPGGEDKVPRAVDEVPQGDDKVPHTEDKVPHAEDKVPHAEDKVPHAEDKVPHTVDKVPQAEDKVPQAEDKVPHIEDKVPHTEDKYPHAEDKGPHAEDKVPHGEDKVPHAEDKAPHTDDKVPQAEDNVPHPEYKVPGCEDKVPRAVNKVPHPEDKVPHAEDKVLLAEDKVPHAEDKVPHTEEKVPRAEDKVPHIEDKVPHSEDKVPHTEDKVPLAKVKGPHSEDKVPHGEFKVPHGEDKVPQAEHNVPHPGQKVPGGEDKVSRAVDEVPQADDKVPHPEDKVPHAEDKVLHAEVKGPHAEDKVPHGEFKVPHGEDKVPQAEDNVPHPGQKVPGGEDKVPRAVEEVPQADDKVPNTEDKVPHAEDKVPHAEDKVPHTEGKVPQAEDNVSHTGDKVPHTVDKVPQAEDKDKVPHTEDKYPHAEDKGPHAEDKVPHGEDKVAHAEDKVPHTEDKVPQAEDNVPHPEHKVPGGEDKVPRAVDKVPHAEDKVPHAEEKVPLAEDKVLHAVDKVPHAEDKVPQAEDKVPHAEDKVRHAEDKVPHAADKVHHTEDKVPHTEDKVPHAEDKVPHAEDSVPHAEDKVPHAENVKVSHAGDKVPHAEDKAPHAEDKVPHAEDKVPHAVDKVPYSEDKVRHAEDKVPHAEDKVLHAVDKVPHAEDKVPQAEDKVPHAEDKVRHAEDKVPHAADKAPRAMDKVPHTEEKVPHTGDREPHSEDKVPHTEHKVPHAEDKVPHTEDKVPHALDKVPHAEDKVPHAEDKVPHTEDKIPHAEDKVPHAEDKVPGGEDKVPHAVDKVPHAEDKVPHIANKIPHAEDKVPHTEDNFPQAEDKVSYTEGKVPHTEDKVPQAENKVLHAEDKVTHTEDRIPHTENKVHHTEDKVPHAEDMVPHTEEKVPHTEDKAPHTEDKVPHTEDKVLHAEDKVPHAGDNVPHTEDKVPHAEDKVPHGEDKIPHAEDKVPHSEDKVPHTKEKVPYAEDKVPQAEDKVPHTENKLPHTEDKVPHAEDKVHHTEYKVPHTEDKIPPAENKVSHAEDKVPHPEGKDKVRHTEDKVPHAEDKVPHFAHKLPHAADKVPHAEDKVPHIEDKFPQAEDKVSHIEDKVPHTEDKVPDTEDKVPHIEDKVLHAEHKVAHAEDKVPHTEHKVPHTKEKDKVPQAEDKVPHTENKLPHTEDKVPHAEDKVHHTEDKVPHTEDKIPHAEDKVPHAEDKVPHTEDKVPHAEDKDPHAEDKVPHTEEKDPQTEDKVRHTEDKVPHAEDKVPHFEDKVPHTKNKVPHTEDKVPHAEHKVPHDEDKVPHAQDKVAHTEDKVPHTEDKVPHAEDKVPHAEEKVPHSEDKVPHGDDKVPHGDDKVPYPQDKVPQAEDKVPHAEDKVPHTEDKVPHIEDKVPHAEHKVAHSEDKVPHTEDKVPHTKEKVPCAEDKSPQAQHKVPQTEDNVPHTEDKFPQAEDKVPRSEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPNAEDKGPHAEDKVPHAEDKVPHPADEVPHAAEKVPHTVDKVPHTEEKVPHAEDEVPHAEHKVPHAEDKVPHAQDKVPHTDDKLLHTEDKVPHAENKVAQAEDKVPHVEDKVHHAEDKVPPAQDKVRHIEDKVPHAKYKVPHAEDKDKVPHAEDKGPHAEDKVPHAEDKVPHAADEVPHAAEKVPHTEDKVPHTEDKVPHAEDKVPHAEHKVPHAEDKVSHAQDKVPHTDDKLLHTEDKVPHAEDKVPQAEDKVHHVEDKVPHAEDKVHHAEDQVPPAQDKVRHIEDKIPHAKYKVFHAEDKVPQAEDKVPHAEDKDKFPHAEDEVRHGEDKVPHAADKVPHAEDKVPHTEDKVPHAENKVPHAEDKVPHAEDKVPHAQDKDKVPHAEDKVPQAEDKVPHVEDKVPHAEDKVHHAEDKVPQAQDEVPHIEYKVPHAKDKVPHAEDKVPHAEDNVPHPGQKVPGGEDKVPRAVEEVPQADDKVPHPEDKVPHAEDKVPHAEDKVPHTEGKVPQDEDNVSHTGDKVPHTVDKVPHIEDKVPHTEDKVTHAEDKVLHGEDMVPHTEDKVPRAEEKVPHAEDKVHHAEDKATHTEDKVPQAEDNVPQTEHNIPHPEDKVPGGEEKVPHADDKVPHAEDKVPHTEDKVPHIENKVPHIEDKVPHSEDKDKVPHPEEKVPHGEDTVPHGEDTVPYAEDKVPHAEDKVPHAEDKVLQAEDKVTHTEDKVPHTEDKVHHTEDKVPQAEDKVPHIEEKVPHTEDNLPHTEGKVPHPEEKVPYGEDTVPHGEDTVPYAEDKVPHAEEKVPHAEDKVPHAEDKAPHTEDKIPQAEDNVPQTEDNIPHPEDKVPGGEDTLPHAEDKVPHAEDKVPHTEDKVPHIEDKVPHIEDRVPHTEDKDKVPHAEDKVPHAEDKVPHIEDKVPHTKDNVPHTEDKVPHPEEKVPHGEDTVPHGEDTVPYAEDKVPHAEDKVPQAEDKDKVTHTDDKLPHTEDKVPHAEEKFPHAEDKVHHAEDKVPHAEDKVPHAENKVLHAEDKLPHAEDKLPQAEDKVSHTEYKVPDTVGNVLQAEDKVPHDEDKVPRTDDKEPHTEDKVPHTEDKVPHAEHMVPQTEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHTEDKVPHTEDKVPHTEDKVPHTEDKVTHAEDKVLHAEDMVPHTEDKVPHAEEKVLHAEDKVPHAEDKVPHAEDKVPHTEDKVPHTENNVRHAEDKVPHTEDKVPHTEDKVPHAEDKIPDADDKVPQCEDKVPQCEDKVPHAEDKVPHAEDKVPHAEDKLHPTEDKVPHTEDKVPHAEEKVPHAEDNVPQTEHKVSHTEDNVPHAEEKVPHAEHKVPHAEDKVPHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HW46</accession>
    <name>A0A6S7HW46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">G- coupled receptor 54-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A085311</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006604">
        <property type="protein sequence ID" value="CAB4009884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HW46"/>
    <dbReference type="OrthoDB" id="10049706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45698:SF1">
        <property type="entry name" value="TRACE AMINE-ASSOCIATED RECEPTOR 13C-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45698">
        <property type="entry name" value="TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4009884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19076" checksum="06BC207791A8E80E" modified="2020-12-02" version="1">MSSWITGFTAEVLVTILTEGVYDPATESCKHIVVQNTISTICLSTGLFLLQSVITLTLFTLAYIDVFRGIKASLRFAVSARAEHVNGIKRLKKVTKVTKVAAITTFVLAVCWLPCSVSFYYSLLVYEPFNDLHNLFVVYIGLLAFANSCINPFVYVFSNPELRNALRDIFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HX98</accession>
    <name>A0A6S7HX98_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049412</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003492">
        <property type="protein sequence ID" value="CAB3999012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HX98"/>
    <dbReference type="OrthoDB" id="6114255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="179"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="415" mass="48190" checksum="3A855D7013BA2A87" modified="2020-12-02" version="1">MSEKEHKQKLITLMDDIMSEIDLKPLHPKNKLLLYSRYLLSKLSWHFTVTTLSRTWVTENMDSVVNKYVRKWLEIPISGTLSNVYLTSNKFGLNIYPPSIKFAQCQTVARNALKTSPNHSIKDLWKTTSESKNIQYDVYTSTKEVLKTFTSGQEDKLQNHLILQGSFFSNVIKFSLSKLNGIWSKSQSNLPKNIYNFTIRYINNSLPTRKNLTKWGILSNSDCSFCLNPETLLHVVAGCQTYLPRFTWRHDSVLNFIAQTLQPVNNSNLFVDLPGYKSPSIVIGDTFRPDLLLSINSDCLYILELSVGYESNLQTNVDWKRRRYEDLITQQKKQFKSVKFVNLSISSLGVFSKECHSFLDMLNDLGLDKRHQHFAIRKIMSIAIRTTYYIFCCRDKDWLNPELLNVESLTFKFIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZJ0</accession>
    <name>A0A6S7HZJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082606</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006695">
        <property type="protein sequence ID" value="CAB4010157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZJ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="63"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="5"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="69"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12823" checksum="82617C023FD02E14" modified="2020-12-02" version="1" fragment="single">MEENINALNKRCQRIEEKNSNLQQSVHKIQSESCAEKCTWASMSPPPPNTTEEYSIPTSNTFDLLTDDAANKGDNTNEHVELKSKGNKEENVEDGVEQNDNIQQDPPSHCPTKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5S0</accession>
    <name>A0A6S7I5S0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Short transient receptor potential channel 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A030091</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004149">
        <property type="protein sequence ID" value="CAB4001662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5S0"/>
    <dbReference type="OrthoDB" id="2373987at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034703">
        <property type="term" value="C:cation channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070679">
        <property type="term" value="F:inositol 1,4,5 trisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015279">
        <property type="term" value="F:store-operated calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051480">
        <property type="term" value="P:regulation of cytosolic calcium ion concentration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002153">
        <property type="entry name" value="TRPC_channel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10117">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10117:SF54">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL-GAMMA PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0407">Ion channel</keyword>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4001662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="46774" checksum="F0EA99F240DC65EB" modified="2020-12-02" version="1" fragment="single">MSRCKKFRSLVHDIDCEKKCCENKPRIDRCEDMLKSYEILTNPESMANQENPLSHAFKLTREIGNQKKINLQVKSELEAFYRKSRKFTVDLLDVCENNQEVTVLLNFDEDDLSEKKKIKILMEAVVAKHKEFIAHRHVQQLLHTIEHPSWPWSIIEFLPGILKYILYTLTFPIWAFVFIFWRDCDILWLQKMSHFMATPFGKFVSHTSHYCAFVVLLFISSAREYHEPSVIEYLLSAIVWSMCIQQFLIFWKETCCWRCCCYFHSRWNQVLTVMLIGFVISDLLWLIGSTAVGGWPVDKLESASDMAGHRILLLANSFFSISTVMSVFYLGNFWRVNSKSGPLQLSTLRMFKDIRKFLMIFLGVFLAFSLGVRNIYSYRNKLEAIYGNGTAQSVEDELST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6A8</accession>
    <name>A0A6S7I6A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042203</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003721">
        <property type="protein sequence ID" value="CAB3999978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6A8"/>
    <dbReference type="OrthoDB" id="10067563at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="61" mass="6930" checksum="2062252A7CE38410" modified="2020-12-02" version="1" fragment="single">MEACIAEVHQWMLSQKLKLNPEKTEFMIIGTRQQLEKVNIDCLQVGDRQIMPSSVAKNLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IB09</accession>
    <name>A0A6S7IB09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Proton-coupled folate transporter-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A058750</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007816">
        <property type="protein sequence ID" value="CAB4013250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IB09"/>
    <dbReference type="OrthoDB" id="419734at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23507:SF1">
        <property type="entry name" value="FI18259P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23507">
        <property type="entry name" value="ZGC:174356"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4013250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="470" mass="52043" checksum="16A1F051FEA20E74" modified="2020-12-02" version="1">MAKTSCLTILRSAEPVVFLYAFGLLIHSPLIQQYIYDRVSEDKGYNNTLNSRTECANDSDLHDEVESKTSFYMFGLIFFSGAPSLVTGLLIGSWSDKVGRKPAICLPCFGAAVDMSLTLVVIYFDLPLYILFAGSFFNGMTGYFPAVILATMAYISDTTEKSMRATKLGILEFFIFIGGTIGQAFSGKIIESNGGYKAPYWVVCGCMVSATLYAIFLMPETLPKENRDISVKFFDRKHFNAILNVVRKQPGKNNNLRWLIALNFFLHVSYFGSYAVTILFLLDKPLCWSPLDIGLFCSERFFCLGIGAVIGVKFLSKCFKIRHIIYFGLLTYIASLVLFAFADTPALVCSVPVVGMFIGAVIAYFRSMMSQQASPDQQGSLFAAIGFVDVLATVVSSGIFYLLYPLSLKFDFNGTSFLVAAVFALVVLYLSTRLTDSIMDMPAEIIEYEGEPVDEKTPLLLSDVHSDVKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IB86</accession>
    <name>A0A6S7IB86_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposable element Tcb1 transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032543</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004672">
        <property type="protein sequence ID" value="CAB4003591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IB86"/>
    <dbReference type="OrthoDB" id="10051057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="331" mass="38682" checksum="32BF5FFE843AC576" modified="2020-12-02" version="1">MSNTSVQRVIKRFDTKNTNTKKLKKSYQGRRKSLTERDERKLKRAIIQLREKSSNFTVMEVVQRSCISPTIATYRTFLRYVKRLGYGFFQSRKKGVLTKKDLKIRRKFARSMATKPQDYWTSDVSFYLDGVSFIYKSNPMSDVLKPKNRVWRKRGEGLLLTTKGSKELAGSKRLHLLVAMAHGHGVICTEPYVKMDGPYFARFIRRHFPILFDITSNNDNTKPKLFVMDNDPSQTSAVARKALKSIKASMQVIPARSPDLNPIENLFHIVRKKIEAEILQKNIIYQSWDEFVERVKFNIWSVSQEYVDKTIASMPRRIKDIVKHKGKRTKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHS5</accession>
    <name>A0A6S7IHS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A071303</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005197">
        <property type="protein sequence ID" value="CAB4005422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHS5"/>
    <dbReference type="OrthoDB" id="8948150at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="749"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4005422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="749" mass="81842" checksum="4EDB078BC054E6BB" modified="2020-12-02" version="1" fragment="single">MCAVHFEESSFRNSEKNSLWREAVPTIFREQSEVVTCRAKRKLFTDSVEDEFDEDSAIHSYGEDVVIGAHTPGGSDEGGSDEDSAIHSPGEDVVIGAHTPGGSDEDPAIHGYGEVVVIGAHTPGGSDEDSAIHSPGEDVVIGAHTPGGSDEDPAIHGYGEVVVIGAHTPGGSDEDPAIHSPGEYVVIGAHTPGGSDEDPAIHGYGEDVVIGAHTPGGSDEDPAIHSPGEYVVIGAHTPGGSDEDPAIHGYGEDVVIGAHTPGGSDEEQTMHVDAKCQTSKKLSHGTPRKVKLRKVIDGQRKRVKRMREALNMKKKRKPSLQKEEAMTILRQFLPDNITKFIELQIDLHQKKPKGRRYTKETKQFALSLYHISGGAYRMVAKFFSLPSKSSLLKWVSGLPRSPGLTKEAMDAVESKVKHMDENTKLCTISMDEMSLKVNLAYDSSKDEVIGLQDFGDATKTKELATSALVLMARGVMGNWKQPLGYYLVNESCDSDKVKEKLFEAIDKATSIGLTVTAVISDLGSNFIKLARDLNITPEKPWFIHNGKKIIYIFDPPHVIKAVRNNMINYEFHFDNKVASWKDVEALYANDKAQSIRCCPKLTDNHIHPNGFKKMKVKLATQFLSHTVAAAIMMSVSIGTLPASASGTADLITKLDQIFDCLNSSTLKAGKFLRRPITSNSQHVQFMKEMLTFIASIKVINPENQKDATNTLKCLRGLHKKSATVTEESSEPFKVEDSDYRLHEIENNLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIB8</accession>
    <name>A0A6S7IIB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005313">
        <property type="protein sequence ID" value="CAB4005781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIB8"/>
    <dbReference type="OrthoDB" id="6145513at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46564">
        <property type="entry name" value="TRANSPOSASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46564:SF1">
        <property type="entry name" value="TRANSPOSASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29282" checksum="36AFDBCF7A1DEBEE" modified="2020-12-02" version="1">MRCARIAVDAVREGVLKTFSIKFKVLLDLISAIAYSIRWELNLTRKRLEVIPVESLTPAAIEKQNRYFEEISEFPARHIHFMDEASVIRTSGNRTYGHAYIGKPAVEVCRYSSDATFTINLLCGFFGIDYCDVLEGPSNGLELLQFFSDALEQRYPNGNPILSAGDAVVMDNCGFHHARHIEPVLREMLLRQGVTLIFQPPYCPELNPCEYCFAHMRKSFRNNERFTASYTELAIVNAMEFITAGFCRGFFEKCGYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IK12</accession>
    <name>A0A6S7IK12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013294</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010448">
        <property type="protein sequence ID" value="CAB4019425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IK12"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="67" mass="7620" checksum="21FB5CED3E49C1B5" modified="2020-12-02" version="1" fragment="single">CEQPVCNKSTSCSRFAPETSKGWKAGFKVASCRKCCEQQEQREEIAVKEQSKSTPQKPVKIRKTKRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IK22</accession>
    <name>A0A6S7IK22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041424</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005473">
        <property type="protein sequence ID" value="CAB4006311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IK22"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36493">
        <property type="entry name" value="NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="210"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="374"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="716"/>
            <end position="1133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="374"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="407"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="600"/>
            <end position="665"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="673"/>
            <end position="694"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="749"/>
            <end position="768"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="791"/>
            <end position="837"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="844"/>
            <end position="859"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="882"/>
            <end position="928"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="935"/>
            <end position="965"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="986"/>
            <end position="1014"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1022"/>
            <end position="1118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1133" mass="116738" checksum="C051F6A24E3123D9" modified="2020-12-02" version="1" fragment="single">MRTRFLALRTRFLAGRTRFLAVRTRFLAVRTRFLEVRTRFLAVRTRFLTVRTKLLTDKVAGAKDKVPGAEDKVPGAEDKVLGGEDKVPGADDNVPGGEDKVPGGEDKVPGGEDKASGGEDKVPDGENKAPGAEDNVYGAEDKVLALRTRFLAVRTRLLAVRTRFLTVRTRFLTVRTTFLAVRTRFLTVRTRFLAVRTRFLAVRTRFLTDKVPGGEDKVPDGEDKVPGGEDKVPDGEDKVPGAEDKVPGRENKVTGAEDKVPGGEDKVPDGEDKVPGGEDKLPGGEDKVADGEDKVPGVEDKVADGEDKVPGAEDKVPDGEDKVPGGEDKVPGGEDKVPDGEDKVPGAEDKAPCAEDNVYGAEDKVLALRTRFLADKVPGGEDKASGGEDKVPDGEDKASGGEGKVPGGEDKVPDGEGKVPGGEDKVPDGDDKVPGAKDKVPGRENKVPGAEDKVPGSEDKVPDGEDKVPGGEDKVPGGEDKVPDGDDKVPGAKDKVPDRENKVPGAEDKVPGSEDKVPDGEDKVPGGEDKVPGGEYKVPDGEDKVPGGEDKVPGGEDKVPDGEDKVPGAEDKVPNGEDKVPGGEDKVPGGEGKVPGGENKVPDGEDKVPGAEYKVPDGEDKVPGAQDKVADGEDKDPGAEDKVADGEDKVPGAEDKVPDGEDKVPGGEGKVPGGEDKVPDGEDKVPGAEDKAPGAEDNVYGAEDKVLALRTRFLADKVPNGQDKVPGGVSKVPGAEDKVPGAENNVPGAEDKVPGAEDKVPGAEDKVPSAEGKVLGGEDKVPGAEENVPGGEDKVPGGEDKASGGEDKVPDGEDKVPDGEDKVPGAEDKIPGAEDKVPGAGDKVPGDEDKVPGAEDKVPSAEGKVLGGEDKVPGAEENVPGGEDKVPGGEDKASGGEDKVPDGEDKVPDGEDKVPGAEDKIPGAEDKVPGAGDKVPGDEDKVPGAEDKVPGAEDKVPGGEDKASGGEDNVPDGEDKVPGGEGKVPGGEDKVLDGEDKVPAAEDKVPGGEDKILGGEDNVPGAEDKVPGAEDKVPGAEDKVPGRENKVPGAEDKVPGGEDKVPDGEYKVPGGEDKVPGGEDKVPDGEDKVYGAEEKVRGAEDNVSRAEDKVPGAEDKVPGGENKASGGEDKVPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IK27</accession>
    <name>A0A6S7IK27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">WD repeat-containing 38-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081245</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009829">
        <property type="protein sequence ID" value="CAB4018057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IK27"/>
    <dbReference type="OrthoDB" id="674604at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19879">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR TFIID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19879:SF9">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="26509" checksum="9D65D2FCA1288408" modified="2020-12-02" version="1">MSHETVLMETVNGFSVAELTEDKEESDSESEEGDVSPFVLTPISFRSLVGHDDEVNACCFSPDWTRLVSGGDDWVVKVWDTHSGQPVYTLTSHKGAIKCCSFARSGDIFATGSYDHNAIIWDANTGKEIHKLQGHTHSVETCSFSNDSSWLCTGSWDCLAIIWSAKVTCLTLFFLALAMNISDCYLLGECNNVCRGAPELSSSQNPELRVFQSFKNWCSPNCLCFTISRQVMLCTLAQVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INR8</accession>
    <name>A0A6S7INR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Mucin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A021413</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011151">
        <property type="protein sequence ID" value="CAB4020844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INR8"/>
    <dbReference type="OrthoDB" id="9979188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050751">
        <property type="entry name" value="ECM_structural_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24034">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24034:SF209">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4020844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="20843" checksum="4EFA32906BBE9B59" modified="2020-12-02" version="1" fragment="single">VNLTFLVQDTKNGSSTLSPNIQLCRCENGGECFVPEATSEQDAAIENTFLVMSCNCPSGYTGEFCGDVRDFCAGELTPSCNALVTCTNSPTGFTCGDCPNGYDGNGQICSDIDECEGNQTVCDQICTNTVSSYFCGCNDGFSLGSDERNCSAKLQCDANNDCDQICYIDPLQAGQEKCDCNLGYSLRESDMKSCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IS74</accession>
    <name>A0A6S7IS74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005450</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011006">
        <property type="protein sequence ID" value="CAB4020536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IS74"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="330" mass="37576" checksum="C92597FFAC1319B3" modified="2020-12-02" version="1" fragment="single">IKHLMWERDRLKRIAVLTNEESAWFNFKNLKNQVNFKIRENKTQYYNSFFNDNLGDCKKTWNGINTILSKNKNLTHTKKVVVDDAVINDPLGVSNAFKRHFTGIGPKLAAKIPVNLNANYDHINKPENEFELLIVSELVVSKLVEKLSTRKANGLDNIPACLLKATLLDITDNWSFNMDNGLINAILFIDLRKAFDTIDHEILLNKLSRYGFKYKTIELFRDYLTGRTQITVVNNIPSDSSETTCGVPQGSILAPLLYLLYINDLPNCNLISDGHLYVDDTSLTYADNDINQLLSVMNSDLLSLRNWLNINKLSLNTLKTKSCSSQLDTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCK9</accession>
    <name>A0A6S7JCK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Major facilitator superfamily domain-containing 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A080580</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015494">
        <property type="protein sequence ID" value="CAB4028448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCK9"/>
    <dbReference type="OrthoDB" id="370281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051068">
        <property type="entry name" value="MFS_Domain-Containing_Protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510">
        <property type="entry name" value="INNER MEMBRANE TRANSPORT PROTEIN YAJR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510:SF16">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY (MFS) PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4028448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="430" mass="48692" checksum="B0B3C0FAF224F2B4" modified="2020-12-02" version="1">MGKEGWIMKLTALRFFLAGIENYIIAPTAWYYVRSFGQSKFFLALVLVSYNIAAIIAGPLFGFLTDRFGNAKLLFICSNVLKFVASMMYSINLSAYFPLCARFITGLDGGIAILLGQIALQINEESRGKSFLFFEGVYCLGSAISPGIGSFISFRVNILGWDINEGNSPGIVLAIIWLLFLIFSLFLPGTMWVETGTRIEKLNVSAYEEEERSSEYNKDGDQSLREGCSSEKKPRIMWDSRIFCLFFLMFTNMGFSSTSTFYAPILALDHLHLQLIHTKLIFLNCTIFTLLAFTCFHVASGYVEERKLFATVLIMQLFSISFLTYLAFSWNQVTDIQYYILLLYVCLGMPYFAYPFGNSILSRITDPQFATFIQGLSLSILHVAFITGRVVVSFVFTQTSLTYFCLALISLWLVGIIWYGVLYKRMAVHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHE7</accession>
    <name>A0A6S7JHE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013940</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016234">
        <property type="protein sequence ID" value="CAB4029534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHE7"/>
    <dbReference type="OrthoDB" id="10070846at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="162"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="168"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="23890" checksum="D18E7578478E7DD0" modified="2020-12-02" version="1">MEVFFQLPHCEINENVLRDVQNKRDVLKSRITHIIDCEAYTWRKNNFLREVSVLCRATNIVTTYQIYIPNVTLFDENDRAVRYQIRVIHSLPIKRRRIDNNFYLYSEIVAMLRKIFQDADLVGYKGGNIGLRNLALFDYLDGKYPRCQVDKVLPYQFEPKLGLQTSDSGDESDSEEQSESSDEEITKCLRSKMLGAFRIEAKGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JK72</accession>
    <name>A0A6S7JK72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gastrula zinc finger</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017558">
        <property type="protein sequence ID" value="CAB4031348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5976830at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="181"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1322"/>
            <end position="1342"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="228"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1370" mass="156333" checksum="136672148F252D47" modified="2020-12-02" version="1" fragment="single">MPTWKYSERQKAKALLVEEAYQSLLSRGVEGLPPTMGGRWRTDDPQVNAEMKRLENLRNPKRPRGRSPKVKVDGEVSPKRRGRPPKTAVAETKEVKVAKRKDRPPKAKVVETQEVTVPKRRGRPPKARVVETPKPKVRRQTVAERFISQGRIKLSVPADSVITQVGPNKFTVTVDLSKKPTRKAPEVPKGVTPWKPRERPVPKPRTVLPKEKPVPKPRTKIPKERPVPKPRTKKPVPPPKLRKPARVTREVVEQPVVVTPEEYEIDPFGTYLDKPSYRKIETAANGAAVTYSITPNYMDPLDQMTASRQVVRGILVNELKRMGGLKYTETIKVRMSKEIGNDKTKKDSIYFKSKTGTATNFEDIESTAAQNQLTILSRIETFQNLGSNWIILNIESHYVNIAMYKPLKGSSYMKLPADISNPKCGLINMKNEDNKCFMWSHVRHVRPKARRATTITREDVEFSENLDYEGIDFPVKISDIDKIERRNCISISVFGYKGKKQFYPIRNSKVKYDKHMELLLLGDNDGGNHYVLIKDVNRMLFSVSGNSNKKHFCLHCLHSCVSKESLEKHKETCLEVNGTQATKLPSEGTKIKFKNHRNSMPAPFVIYADFESMLVPEERKVDPESPEEKSSTDLYQTHKACSFGLKTVCHYDDQYSGEYISYVGEDATNVFLKTVLKESIKCREMVNKIFKKKMVITPEQEAEFWMTRNCSICGNDLGDDRVRDHDHVTGMYRGAAHNMCNLKYRITWKVPVVFHNLRGYNSHLIMQEIGKFKMNINVVPNNMEKYISFSLGKSLVFIDSIQFMASSLEALVSNLSPEDFRIVGKRWTGEDFKLVTQKGIFPYEYLDDISKLNVEGLPSRDKFYSSLYESEVKEEDYQRALKVWDHFKMKTMRDYHDLYLETDVLLLADVFENFRKTCLENYKLDPAHYISAPSLSWDAFLKQSGEEIELRIGEEKDCWDNSDYPKDSPYYSAHNKKVIGKFKDEAGGVPVIEFVGLRSKMYSYVKESGGGGMTAKGVKNMSKELEGVKKKRRFMRKLVTDSLKLIDEALAEENSHARVQVLKDNILSKWKDLTEVQASLSIYLEDSEIESKCAAHNEYEMRVMDYMARMTKYLSVNTHAENSNGSNESGSSLGSTCKVQVRLPKIELPTFDGDILCWQSYYQSVKVSIVDNSALADVQKLEYIMRSLKGVAGESVKGFSIVAENYESVLSTLKERFGHSRLILDAHMRGLIHLPRLSAEDATSMRVFYDKVVGHVRSVESMGEKYSSEILAPVLVPLIVDKLPKKLVEKWELEIGDKKEDCLPIKTLFTFLEQVIRAKESSTQAPNVESEPPKNISLKEGFHKNPSFRRSSTSALCSSTETQEKECVVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLS1</accession>
    <name>A0A6S7JLS1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Outer dynein arm-docking complex subunit 4</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tetratricopeptide repeat protein 25</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A037224</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Cilium axoneme</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007335">
        <property type="protein sequence ID" value="CAB4011988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLS1"/>
    <dbReference type="OrthoDB" id="10268002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000537">
        <property type="entry name" value="Tetratricopeptide repeat domain 25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000795">
        <property type="entry name" value="Tetratricopeptide repeat protein 25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040111">
        <property type="entry name" value="ODAD4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23040:SF1">
        <property type="entry name" value="OUTER DYNEIN ARM-DOCKING COMPLEX SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0802">TPR repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="163"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="492"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="446"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="171"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="532"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="576"/>
            <end position="585"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00034139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00034143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4011988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="585" mass="65847" checksum="53AE1C5C693EA9E5" modified="2020-12-02" version="1">MYDDDEEQEEGPKSSFTTYLAEGDVLFKQGEFKKALDSYNLALELKPTEKFALVARSRCHLQLGDTESALKDAETALEDDKEFIRALYQKAEALYSMGDFEHALVFYHRGNKLRPEQQEFRLGIQKAQEAIDNSIGRAAKIKLENKGDLSFFAKQDEVKKPKGYVKPKAVNRSQQQQQTNRGKNTKPAPSSTKTVKQLLGELYADKQYLENLLNDKGFVQGNNDSTIYGLISGGINYLDSRTEFWRQQKPLYARKKEKPLLHRNKPKQKTEDPADFVVRSLDEIDQKLSDGDEQGSLKQAENTLRQVKGMNDKAIPNKQEVVANLHSCIGNAQLELGEPAKALENHKKDLNISKKLESRDGISRALDNIGRCHARIGQFAQAIDSWMEKLPLSKTPLETTWLHHEIGRCYLEQKNYQDALECGQRSLASAQEAQEKVWELNATVLIAQSQVKLGELEASLDSFQNAREIAESLDDKAAEIAIAKAIGDVQDRINKGVEPDDTTTTQDGPDESQQRQEDEEKTEDLTGYSSEQQDKDGHYDENPDGYRENDDTEFDSKDTGGATVDDSGEKTRESEATFTEETGTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLT8</accession>
    <name>A0A6S7JLT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">EIF-2-alpha kinase activator GCN1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A011871</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GCN1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009565">
        <property type="protein sequence ID" value="CAB4017481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLT8"/>
    <dbReference type="OrthoDB" id="5148094at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019887">
        <property type="term" value="F:protein kinase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034198">
        <property type="term" value="P:cellular response to amino acid starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:000090">
        <property type="entry name" value="eIF-2-alpha kinase activator GCN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:000096">
        <property type="entry name" value="eIF-2-alpha kinase activator gcn1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:000162">
        <property type="entry name" value="GCN1, eIF2 alpha kinase activator homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000357">
        <property type="entry name" value="HEAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057546">
        <property type="entry name" value="HEAT_GCN1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021133">
        <property type="entry name" value="HEAT_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034085">
        <property type="entry name" value="TOG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23346:SF7">
        <property type="entry name" value="STALLED RIBOSOME SENSOR GCN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23346">
        <property type="entry name" value="TRANSLATIONAL ACTIVATOR GCN1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02985">
        <property type="entry name" value="HEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24984">
        <property type="entry name" value="HEAT_EF3_GNC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24987">
        <property type="entry name" value="HEAT_EF3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13513">
        <property type="entry name" value="HEAT_EZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23271">
        <property type="entry name" value="HEAT_GCN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25801">
        <property type="entry name" value="HEAT_GCN1_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01349">
        <property type="entry name" value="TOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50077">
        <property type="entry name" value="HEAT_REPEAT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4017481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1199" mass="131497" checksum="D551A9CFCFF7436F" modified="2020-12-02" version="1" fragment="single">MGCLAKHLDKDDPKVHPIIVKLLSALSTPSQQVQEAVANCLPPLVPAIKEEAPDLIKNLLTKLLDSTVYGERRGAAYGLASLVKGLGILSLKQQNIMSTLQDAIQDKKNYRHREGALLAFELLCHILGRLFEPYIVHVLPHLLLCFGDGNQYVRDATDDTARAMMRNLSAHGVKLVLPSLLKALSEDAWRTKTGSVELLGAMAYCAPKQLSSCLPNIVPRLIEVLTDSHLKVQKAAAQALQHIGSVIRNPEIQAISPILLEALSDPTAKTTEALQVLLMTSFVHVIDAPSLAIIMPIIHRALESRSTETKKMAAQIIGNMYSLTDQKDLNPYLSSVMPGLKQALLDPVPEVRAVSAHALGALVKELGEENCSDLLPWLMETLISESSSVDRSGAAQGLSEVLCGLGFDRLSQLMPDVIAATEKTNLPAHIKEGYLMLYLYLPSTFGAEFTPFIGDIIPSILKGLSDESEFVRDTSLKAGQRIVSQYATTAIEVFLPQLELGLFDDNWRIRISSIQLMGDLLYKISGVTGKMTTEGEEDDNFGTSQSNQAIIDCLGYDRRNRVLSGLYMGRSDVSLPVRQAALHVWKVVVPNTPRVLREILSTLFSLLLGCLASTSHDKRQIAARTLGDLVRKLGERILPEIIPILERGLESSKPDERQGVCIGLSEIIGSTSREQVFLYIDSVIPTVRKALCDPLPEVRACAAQTFNNLYKTIGVKALNDIIPPLLEKLVEPALHENTLDGLRQVMSVRSKEVLPFIIPQLISPPVNTQALASMSSVAGEALTDHLSDILPALLSCISQASDEQQLTHDLENSRTLVLSIQDDRGTQIVLDVLMKYSKDESVLMRKAAVNLLCSYCTSTKADLLQYTPPLLHSVLSRFNDSDSEVIEISWNALSAVTKRLQPPDQIQHIPHVRRAVKYISEDLQDKADLPGFCIAKKGITPLLPIFREGILNGSPDVKQDAAEGLGQVIQLTSATALRPSVVSITGPLIRILGDRFSWNVKVAVLQTLGLLLVKVGAVLKPFLPQLQTTFIKALNDPNKLVRQQASSALQHLVKLHSRVDPLFTELHNGVRNTEDNQIRETMQQALRGIVLNVGHKMGETVRQNLTTTLLSFQSHAEENIRVATAGCLGALATIVPDEELVNIVNTDTLVSDATVEWTLRHGRALTMSALFYDCPERLLQLSIFNSLLQLANTLSSNDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JNJ4</accession>
    <name>A0A6S7JNJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Furin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A053749</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017805">
        <property type="protein sequence ID" value="CAB4031654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JNJ4"/>
    <dbReference type="OrthoDB" id="3915838at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="3">
        <location>
            <begin position="408"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="282"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="333"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="181"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="290"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="363"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4031654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="559" mass="62693" checksum="4FA2C449B8BF335D" modified="2020-12-02" version="1">MGRVDLSSEKSAESLSSFVESDDSRHCELNIESSLNAVNILYSHFCYKKNKLKWAGSLEDLKAVVLTVVDEQTAETTTWRSPSGGTWKFDSKALCVTWQTKSQNVYFEGENGEEVTKQIISHLNQGVHASLKASLKASNLAGVEVLDLQDSRAISLSDNDTTNGSFQACGESVSCDEESVIQNVIKRLDSLTRQFENHRTETSVVLNELVNIYENQKSPTATENLTKENRLLKEENKALQTELTKYKDTLTELNTKLTDTESEKSSLLTVIRLLNEEQATVMCSNKDESSQAQQTRSSWQIAGRKTISQSAGHHINLSNKYSTLQIEDDDEAVMSGDAGNNQTLVPKKTPTIDHEKKRRLKNTPRNIQDTKQNSLPTSNQRDTIQPKKQQCDVALVGDSMIKHVDVRKLRHGTNKQVTVRTFSGCRTDEMAHYIKPTLALKPKQVIIHVGTNDLKTKSPAEIIYNLKNLGNQAKQENPRTGVSLSQIIIRSDDTRLQNKLVEVNKCIQDLCEQENWGLIDNSNISNMHLNPYGLHLNKRGSAILAKNIKLHITNNIDNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPP7</accession>
    <name>A0A6S7JPP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003624</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017376">
        <property type="protein sequence ID" value="CAB4031130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPP7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14141" checksum="E42E37EA064FD94A" modified="2020-12-02" version="1" fragment="single">MLVAYSNKHEAGVDLEKALCFPLAPVSIPLSTPDGAIRKTVKSKLYDASMSDLTVVNFDALPPASTMRTYLIDLAAAIRSLVGTGSTIREMASRIIATVPSQYTTIFIVCDTYKDNSIKGGERQARGVSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPQ4</accession>
    <name>A0A6S7JPQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A060441</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009954">
        <property type="protein sequence ID" value="CAB4018321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPQ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043377697" evidence="3">
        <location>
            <begin position="32"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="155"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="207"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="228"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="263"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="297"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4018321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="336" mass="35966" checksum="D7012F07A5E5C003" modified="2020-12-02" version="1">MSSLFVPTSPFLKSVKTSLLVITSLFVLASSCGIGTHQSTLSGGCATCPDTAAGCDTFKPLYMKDYESCMKCDSFTATTQTDKFIMGDCSKGTYQSLDGCDECPVAPKGCDTHRPLYMKIYRSCMKCFLTETSTATSSTWSSSTSSPAMSSLDSIWITLGAFAALTVLGLLFAKYIYPHFIKWCLARHHISRRESDQRCAEQILIPSENADENHDQSDSADSNLAPTPFNPGPTPNPRPTPNPRPTPNPGPTPNPGPTPNPGPSTSNGNPGPTTSNPAPTTSNPAPTTSKPGPNNVALRNSDLNAPEQTTALDSVKNEEDYEEHNERLAQTVETAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRK0</accession>
    <name>A0A6S7JRK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020887">
        <property type="protein sequence ID" value="CAB4035275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRK0"/>
    <dbReference type="OrthoDB" id="5981496at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="13317" checksum="AEC5488CA09A1FA6" modified="2020-12-02" version="1" fragment="single">ILDVAALECCLQQLEPISGDLENSDSRLIWCNRVQCIRPVIEVMKGLIPRPSQQQIGNGDSEARSHAQFFGEKSAHYLQNCRATWIRLDVVRMFIEHTCPPGQSTHPADANNAFLLWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JW51</accession>
    <name>A0A6S7JW51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020933">
        <property type="protein sequence ID" value="CAB4035318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JW51"/>
    <dbReference type="OrthoDB" id="5982143at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19979" checksum="6EB5D884F70CC211" modified="2020-12-02" version="1">MALSGIELPVMQWDGENLKENWRRFKQHVELMFSGPLRSKTEAEKCSYLLIWVGQKGRDIYNTWSDISETNRGKLKTYYDRFEKHVNPKANPVFARYKFHNKIQGPTEPVEEFTTELQLLAQDCEFHDQNEMVRDRIVFGTNSNKVREKLIMEGAELTLEKSYTNRKNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K019</accession>
    <name>A0A6S7K019_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Latent-transforming growth factor beta-binding 4-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A086201</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024441">
        <property type="protein sequence ID" value="CAB4038656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K019"/>
    <dbReference type="OrthoDB" id="5989402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008201">
        <property type="term" value="F:heparin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048513">
        <property type="term" value="P:animal organ development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048731">
        <property type="term" value="P:system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000202">
        <property type="entry name" value="Multiple epidermal growth factor-like domains 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.960">
        <property type="entry name" value="SEA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026823">
        <property type="entry name" value="cEGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051586">
        <property type="entry name" value="PKC-binding_NELL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000082">
        <property type="entry name" value="SEA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036364">
        <property type="entry name" value="SEA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24042:SF5">
        <property type="entry name" value="EGF-LIKE CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24042">
        <property type="entry name" value="NEL HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12662">
        <property type="entry name" value="cEGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01390">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50024">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0106">Calcium</keyword>
    <keyword evidence="11 13" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4 13" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="12" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="disulfide bond" evidence="13">
        <location>
            <begin position="324"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4038656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="53179" checksum="9FCDE251B296D28F" modified="2020-12-02" version="1" fragment="single">VDECVIKPQVCYSNAKCMYNNGSYACQCANGYTGDGKNNCTDVDECVQTPDICHQNANCTNTEGSYSCQCLKGYTGDGKLNCSDIDECTSPNVCIQNSQCSNTVGSYVCQCVVGYSGDGYSNCTDINECKQSYSVCHSLAKCSDTEGTFSCQCDSGFTGDGIVNCTDVDECSQSPSVCHQHAKCTNTIGSYSCQCNQGFLGDGIQDCAENRPPQFTTPRTVNAILNNDTKIQIMAVDPENQDMTFTLLLNGTLTTAQISKQLLTISNLKENGTVYVQVQDEMGAKNILILQVNAFKCPCVHNGKCYQNKTIVYPIQLSDYLCQCEDPYTGDRCEIRPNPCNELPCYPGLECSIAQNSEGFTCEECPTLFEGDGKQCALKPTEEKSSVVSEMTLTDQKWDDQLKTKTSKTYKNLASQLTVEIRKVYKDRVGFSYVIIKGFRRGSIIVEFELLFTKKVENPLKPLMEVAEIGKLGKMRVKTNTMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2E4</accession>
    <name>A0A6S7K2E4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cactin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013464</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025539">
        <property type="protein sequence ID" value="CAB4039545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2E4"/>
    <dbReference type="OrthoDB" id="5975790at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045292">
        <property type="term" value="P:mRNA cis splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018816">
        <property type="entry name" value="Cactin_central"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21737">
        <property type="entry name" value="POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21737:SF4">
        <property type="entry name" value="SPLICING FACTOR CACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10312">
        <property type="entry name" value="Cactin_mid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="Splicing factor cactin central" evidence="2">
        <location>
            <begin position="67"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="17276" checksum="CA875EEA54EA2E57" modified="2020-12-02" version="1" fragment="single">RELASVKRRRQVTMITNTLFKVKISAIVFAIFNTVLHMYTCTTFIPHFQEREQERMARDEEREMMQREKEGAYYQEWEKQEDMFHIEQARMRSKIRIHDGRAKPIDLLAQYVNPDEDSLEFQMHEPYSVLVVCDCHFLTVRSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K492</accession>
    <name>A0A6S7K492_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">5-hydroxytryptamine receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A002020</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023966">
        <property type="protein sequence ID" value="CAB4038231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K492"/>
    <dbReference type="OrthoDB" id="6021576at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14967">
        <property type="entry name" value="7tmA_amine_R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24248">
        <property type="entry name" value="ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4038231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="350" mass="40546" checksum="8B1B27A3F2189E06" modified="2020-12-02" version="1">MDKERLNKSGRITESNSSSTQILLLIIIFTVLGNTLVLVATWREKRLHQPNKYFVACLAVADLLVGILLAPTKLYKDYQSYEWLPSIHFCRFMAWIDTVALAASIYTLTFISIDRYVKISKPLQYKSRMTTSTSVKIIFSVWLISFGLGTCILRRSNGILGRSNGILGTGDSSCNKENKNFYIFLAIIAFFLPIVVMMVMYVLIYIVTHKRQKMLRNGQLGQMLNDQNQRATFLQDLKVIRLFLLVIGVFIFCWLPYFVYLFYIFDHPNFFDPDIYSALNISHWSWVLISTAVASVLPLFNSLCNPIIYACLHDQTYKKAFNDLFKRILCRARREPPNLNEIEFRSQIRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K681</accession>
    <name>A0A6S7K681_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077898</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012413">
        <property type="protein sequence ID" value="CAB4023281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K681"/>
    <dbReference type="OrthoDB" id="5972035at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="24079" checksum="97E14BA43C88DEA8" modified="2020-12-02" version="1">MTSTTAKVANAIDLASKATDCAIDIYTKLQKSFKLSDKTKKQSDECEGEMKKLTFKNFDEKYSCKSVKEIPMDEFEAFVTNRLQKRLNLPDGVKESLLDGFYVGENEEKVNQFHFKDGNGDVHHGRFITMKRNGKIDLAYAMYTLSFELAEKEMEHGSYEWWFYVLPVWNVTHTKEIQNLSESQKDIFSQWCQVKLYNCVAQECLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7A5</accession>
    <name>A0A6S7K7A5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016686</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028097">
        <property type="protein sequence ID" value="CAB4041295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7A5"/>
    <dbReference type="OrthoDB" id="10495609at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="765" mass="87729" checksum="229B2B27F80CD0F0" modified="2020-12-02" version="1" fragment="single">MAECQHNPLKPLRRQMEGVDSDDTEMNTSQDDIIVNKPEDTDPDTEEQGENGQTNESEQTEDDRSKIDQESNGNGDDNNQSVQELRMDKNADSNQGENMQAEMKQKKYEHFESSKLEDGRNGKTGQGENDQMGKEQIQRNHGRAELEREKSGTVHVVEAAEEEEGYIACETPYEPYNLQSTPDQSTHVQVDFYLLILGKIYVNHVYIHLGPNEFRQLEAVDGYPKLWKCSVMFLGDPIKDSFRYRYGVYRLQNAVNVPVFGRVEYGKDLSYCVEIGEKCVSSKVQFDVFRFPEDKHYVSETTHKAVFYYLKWLLPLVCPESISETLVNVKGLSFYLLTKKNVKTVINWIMEQVLGNSATNIQRLYLCVVLGHLQRFCSPLPFPKDNKMVQTCDRFLQCLIACVNSNFLSASDLNLLEKLAVVLVENSSSPGWLTLAAYFYPYFGIDYILGKEYAKSLNYGYNDKEYHEMATELLLNIKIKNRNDQIAHKKLLHLVLKNAPTLDDALKLFTSPEVSQFFANEDEGDLFFSKFYQDKSQDRTQKKSAGTKLVEFHKMPKNIREKMQNYLFPILLEYSKSNEGLKDEHVNMFCKSIVLEKDLGMVEVLKILMELSKSKSVPRQDLLLDILDNKDFEKDWNQASHVDKVNICKSWVMTRLRNKGCKGWPSYEGWPSGVDKIVAVYEVINAIMRCSLNTSNKVLAEDVSIYVVDVFLGNEGISVLKAFPSIEKCVTVVQDCYKSHVRKILKQTPKVVKKSSNILKDCSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9B9</accession>
    <name>A0A6S7K9B9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">HEAT repeat-containing protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A081939</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in nucleolar processing of pre-18S ribosomal RNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Nucleus</location>
            <location evidence="1 7">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the HEATR1/UTP10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013224">
        <property type="protein sequence ID" value="CAB4024763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9B9"/>
    <dbReference type="OrthoDB" id="6022262at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030686">
        <property type="term" value="C:90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034455">
        <property type="term" value="C:t-UTP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030515">
        <property type="term" value="F:snoRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045943">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012954">
        <property type="entry name" value="BP28_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021133">
        <property type="entry name" value="HEAT_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040191">
        <property type="entry name" value="UTP10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13457">
        <property type="entry name" value="BAP28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13457:SF1">
        <property type="entry name" value="HEAT REPEAT-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08146">
        <property type="entry name" value="BP28CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01036">
        <property type="entry name" value="BP28CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50077">
        <property type="entry name" value="HEAT_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 7" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="4 7" id="KW-0698">rRNA processing</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU367065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4024763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="510" mass="57836" checksum="CB4B6933F7B6CE9D" modified="2020-12-02" version="1">MEILLSLLDGLIPLIQSQEEPIVNKQSAFNTIVVLSKLLDDNHNISLKKIFSVAIETISGDDVKAQVASSALHCLAELCSLLKVHLIPFLPKFLPLVLQILECKDGEKRSDMLLLNALTVLQKVIQSLPNFVSPYLRNILVQLVSPVFVTVNEDGSVQNKQILDVAVSLRADIALLVKPRILIPNVSQCYEEIVLNKNNESLIALHQVLDSCVAYMTKDDVKNYHNELLSLFMSALDYRSQHAQGVSEENLLRIEETIIGAFISLIMRLSESLFRPMFLKLVDWATRSSAAKSRQLVFYHLADRMAEKLKGLFVLFAGYLIKNTASILDSTNITKTEEIFFVGEYEDDEAIEKSCQLLGYVLDCLYKCFLYDNQRFVNKERFDQLLQPLVDQIENQIGDTEVFDKRVSDHLAPCIAQFAVAAGDETYWKTMNHQICLKTRHSSSQVRLAALKVVQELNHKLGEEYLALLPEIVPFLAELMEDESFEVEQKCQQVISEMEEVLGESLQKYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9P0</accession>
    <name>A0A6S7K9P0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Erlin-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A073295</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the band 7/mec-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030063">
        <property type="protein sequence ID" value="CAB4042406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9P0"/>
    <dbReference type="OrthoDB" id="77368at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015485">
        <property type="term" value="F:cholesterol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031625">
        <property type="term" value="F:ubiquitin protein ligase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032933">
        <property type="term" value="P:SREBP signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033294">
        <property type="entry name" value="Erlin1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15351:SF3">
        <property type="entry name" value="ERLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15351">
        <property type="entry name" value="ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Band 7" evidence="9">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4042406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="75" mass="8548" checksum="02E7AB04673BB553" modified="2020-12-02" version="1" fragment="single">MVPFLTSYRSVQITMQTDEVKNVPCGTSGGVVIHFDRIEVVNILSSSEVHNIVRNFTADYDKTLIFNKIHHELNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAK3</accession>
    <name>A0A6S7KAK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PREDICTED: uncharacterized protein LOC107339408 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A021986</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024818">
        <property type="protein sequence ID" value="CAB4038980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAK3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="161"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="193"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4038980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="365" mass="40849" checksum="9ED385ADA96D291C" modified="2020-12-02" version="1" fragment="single">MADKHMQILANLIKAVTNVADRGTSQESNIEGSEGSSSVSVEETIKRLFPSTEGGQGVAREELYVRGFTTTFELTSSMTEEEIRCILEEKLKDKLCNIAGLKFIFVRAVCNKIIVPSMSKTESFDGRMVKHFAGQGPIYIRALRDISSALMKGHWKRIEPDCSASDDESDDNASVKSPVHEPCTGPLHPPSPDISTTRLSSEPSTSATNEPSCSRNLIACPTCHNAFPAGEIELHADACAEEKYGSVNENQYNNIMEEFDDIYEIENTSHVETPTINVYDNDEIPNDDILTPENHKQKIKDAIYRLNKLVPDKQNKYHIRRKTIFDDYVNARVRSKWMQPENKIRVTFVGEKGIDGGGPKREFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDJ7</accession>
    <name>A0A6S7KDJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Disulfide-isomerase A4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014551</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein disulfide isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010033">
        <property type="protein sequence ID" value="CAB4018498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDJ7"/>
    <dbReference type="OrthoDB" id="427280at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003756">
        <property type="term" value="F:protein disulfide isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034976">
        <property type="term" value="P:response to endoplasmic reticulum stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02995">
        <property type="entry name" value="PDI_a_PDI_a'_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18929">
        <property type="entry name" value="PROTEIN DISULFIDE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="546"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="546" mass="63001" checksum="474BEB0649D9EB8F" modified="2020-12-02" version="1" fragment="single">LAVANLDGLTNISSDIFAERKALVDRCWVFYGSKHDKGGVFLTHRTYISSRTMDVLSNLKPKFSQPDHSHIRITVYFRSKKKILSCSKNMGVISDMPAKHDDFKFDKILEVNLKLVLQFFCDIKLTFESQIFTTCTTSKPNSWGSSCEHLITRIISCSATSLSKNQRPQLSAEDEAKTHKIASVRILSMYRLDLMFDINVFGYLCRLRLTIGPKFDEMIVMVFTSTSMFSSKMLTLALSRNNSFKFRYFCAKTSSKHFPIATISVLAFKPDFERKNKHVILKTRNKYSQKIQEIDLFYNLRRFQLMSSLPICYIFSRFSAVFILSVPRYRQILMHRYPYRRIGYQYIGPKFNISYILDSNLVVTQLIPECININWIFNNYSPKASNLHKTASHHFANFDFVIYRIYELQPEIKSQPVPKGKPGPVQVVVGSNFGKIVLDETKDVLIELYAPWCGHCKALEPTYKKLAQKYRDEANLVIAKLDATANDVPAEYKASGFPTIFFAPKGGKSKPVKYEEKAKELFRRNYSKLVTERKCMEPLKPITEMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFZ2</accession>
    <name>A0A6S7KFZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alpha-2-macroglobulin-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A038033</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protease inhibitor I39 (alpha-2-macroglobulin) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014621">
        <property type="protein sequence ID" value="CAB4027133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFZ2"/>
    <dbReference type="OrthoDB" id="9998011at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02897">
        <property type="entry name" value="A2M_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.50.10.20:FF:000001">
        <property type="entry name" value="CD109 isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.690">
        <property type="entry name" value="Alpha-macroglobulin, receptor-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009048">
        <property type="entry name" value="A-macroglobulin_rcpt-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036595">
        <property type="entry name" value="A-macroglobulin_rcpt-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050473">
        <property type="entry name" value="A2M/Complement_sys"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041813">
        <property type="entry name" value="A2M_TED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047565">
        <property type="entry name" value="Alpha-macroglob_thiol-ester_cl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011626">
        <property type="entry name" value="Alpha-macroglobulin_TED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019742">
        <property type="entry name" value="MacrogloblnA2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11412">
        <property type="entry name" value="MACROGLOBULIN / COMPLEMENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11412:SF171">
        <property type="entry name" value="PREGNANCY ZONE PROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07677">
        <property type="entry name" value="A2M_recep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07678">
        <property type="entry name" value="TED_complement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01361">
        <property type="entry name" value="A2M_recep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01419">
        <property type="entry name" value="Thiol-ester_cl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49410">
        <property type="entry name" value="Alpha-macroglobulin receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="Terpenoid cyclases/Protein prenyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00477">
        <property type="entry name" value="ALPHA_2_MACROGLOBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4027133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="651" mass="73955" checksum="7FC66D66615630C2" modified="2020-12-02" version="1">MGPALNNLEDLLRMPYGCGEQNMANFAPNIYIMEYLTKTHQVTGDIKSKAENFMEVGYQRELRYKRKNGSYSAFGDRDSQGSMMLTAFVVRSFARAKEYIFVDDKQVKDSIKWFSKKQQENGCFPQYGKLFNKRLQGGVNSELTITAYVTTALLEAGESTNNTMVSRALSCITRQLDSIQDSYTMALVTYTLTLANHSDAQKMMKLLKNKAVKTGDLMYWTGQDKPKPQPTYYYYYRSSAEVEMTAYALLAILHQTSDDKSVVTDKVMDIVRWLSKQRNSYGGFSSTQDTCVALQALAEFAGKAYGNNVDFRSSILTGSLKMGNYYNHNFSITTDNKLVLQTVELPAKVIPGKLLVSGQGVGCALVQASVKYNIPDPEDVPVFDINVNVRTRRSAPEEETTPCSPLRLDITTKWLKEDVSNMAVVDIKLVTGFSVREESLEELRNDPDLNFKRYDIDGQNVQLYFDEIKDMTFSIDIHQDTLVKKLKPAVVKVYDYYEPESQAKVMYRIGEAECYGNKIHTECPRCMTLQDMDAFIKATVVCNSTVTRMKSSKGMLKIVKTFSDDAIKEKKRILKKELEYQIPEFCPCEEIYNKQRAIVIGQNSYFKVDGPKTTVVLNSGTTILKYTGKSMKPQIKKIKKQLNRCRRKGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KI04</accession>
    <name>A0A6S7KI04_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069538</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037762">
        <property type="protein sequence ID" value="CAB4045135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KI04"/>
    <dbReference type="OrthoDB" id="5978065at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006578">
        <property type="entry name" value="MADF-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10545">
        <property type="entry name" value="MADF_DNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="152"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="176"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="26728" checksum="71E6B882B8AB2010" modified="2020-12-02" version="1" fragment="single">RLAEQLGSRYCVDKIQQEWHNLATYFERERMRMKGSKKSGAGSDEVYRTKWPYYASMEFYMDKSIPDAAVSTLQHIARIAKKSSKTTKSACEEKKAKLWEVLAENLSGSHSDGDWQQAWQQGFQAGFQKAWQQCSQMFMQRQTFMPQMTQSFHPTAHNHQASSTFYMQPSTPPHHQPFTQPLPTQPSTPHHQPFTTPPRTQPTTPQQQPFTPPHMQSSTPEHQLKPRNHPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KVB1</accession>
    <name>A0A6S7KVB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019416</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012931">
        <property type="protein sequence ID" value="CAB4024269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KVB1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="614" mass="69702" checksum="989EB5BF6D8C624B" modified="2020-12-02" version="1">MGSRISCFERTWRHFSENMEDVSVAGKRSCVPEGNTPGKPPAKVRTRTESEASRKRCLFGKDNITSEKSKWTTSEDSAIVQYICLYWEDAHRNKWPTMKNPHFWDGCAQAVMNICKTTRTVGGACRSRVSKYLAKHHSTLTEAEDALRIDYVLETSNDTNFVDQISSTPKQFPQTNVEESLSPIFSCSPQKKASISNIGDLVKNLVFAFQNTMTKRLKMQLLRYLYKQIVIESGGTELATFVRPNFLDVSLDAMKTLQTEKKENLVYGLSICFKRKDNDESETRMPLQRMPFGLVDYNIKYFSSHSSQKLKMEDHYAKCLETMYAHFGHKWLCLFRGPYWQYEEKVNPESAYDLPLVNSMQVDSDLVPTSNNMEVVSVQSAGIQVSNSMDKSSHDNTHSSNSIIDDVLAELQINLEEFEFSSMDEESNNIVEEESMPSCDIEMSNSLPTEQCQQQVEVCVSPEAMEVHHKIQPQQSNRKPVNSCLYDTMKSKVNVASVGPRQIQKKILGSGFSRTVDVQMEALRQAAASNPNGRWWIKADACDVRQGLRESVLAQWAGDVGLGDGYVQELYQQYKADCSFVEKLTASNKLQFSLSELHQLNGLQLNGLFILWQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LC36</accession>
    <name>A0A6S7LC36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016607">
        <property type="protein sequence ID" value="CAB4030079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LC36"/>
    <dbReference type="OrthoDB" id="5988856at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18758" checksum="C6D9CD9CA6963080" modified="2020-12-02" version="1" fragment="single">DKVTSEIVVNTVESDTKIESGPPFQEALPIIVLDSETVDVEIIGIEKVQSYLACTKCTKKIQHTDNRRFIECSHCHFKQKEAAAAKHWFAQVLVENKSSTETNRFSVTLFESSIKQIVQANSEIPEDNKFTKELIEDLLFDTSVISITYNKRTHIVENVISAQSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LLZ0</accession>
    <name>A0A6S7LLZ0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">QRICH1-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037477</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024285">
        <property type="protein sequence ID" value="CAB4038502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LLZ0"/>
    <dbReference type="OrthoDB" id="5964854at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="QRICH1-like" evidence="1">
        <location>
            <begin position="32"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17401" checksum="D00D0F19E8546D24" modified="2020-12-02" version="1" fragment="single">MEGVSRYITPLTAEEERLLVASTIPKNTGYNIKRAVNVFEPWQSCREDKTVRNVPSSSVNLQICQVGDLTTPLHCMNTETLNLWLSRIVEEVCNAKGERYPARRLYVIICSLKRYLSDKSGLDPLFKDDKRFTLFRKVFDGEVRDAAKKGVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LP38</accession>
    <name>A0A6S7LP38_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A031180</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025963">
        <property type="protein sequence ID" value="CAB4039853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LP38"/>
    <dbReference type="OrthoDB" id="10068383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="235"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="167"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="173"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="192"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1053"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4039853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1053" mass="118191" checksum="347A2406CF3FBF14" modified="2020-12-02" version="1" fragment="single">MLVHRPRWTKWLTRFERLIVGMNITDATQKRALLLHYAGPDVDDIFETLPDTGEDKDYKKAVECLNTYFVPKVNMVYEEYQFRQAKQRSNENLASYHTRLRQLAKHCGFADVDKEIRTQIVFSCTSHKLRLRALREDLSLTALLEAGRDLSLTALLEAGRVAEITDRQARDIQPTNTDQSVNALPSRNKPYPVHPDPNAPPHTPNNQRPHTHSLCRNCGGPFPHAISCPANGKTCRSCGKNGHFANVCRSRPQQRPRFVQQIADDPEQDPAYTFVIHSEPQVLNTFSPSSAPLRPSPSCIVNIGGQPIFVLVDSGASANLLDEATYNSITNNTRLSAMLNPPTTKIYSYGSTTPLPILGSWSTSVRHKSTTVNATFHVTKGNSGNLLSCTTAQQLNLLTLNVNSTMSGQTILHAFPHLFDGIGQVKGKEIKLHISNTVTPKQQPQRCIPFHVRKDVEQELKRLEQLDIIEAVDGPTPWVSPIVVVPKKSGEIRICVDMREANKAIGREKHLMPTLDDLIADLNGASVFSTLDLASGYHQLTLAPESRHITTFSTHVGLRRYKRLMFGINAASEIFQNAIAELLAGLPGCKNISDDIIVYGKDQLEHDLNLQAVLQRLSDYNVRFHNMAAGSVCMSSDPDENIMTTVWDVKEIYRYKTSEMIYYDGERIRWSADHESLKKLNSVCQLSDVSQTNGQKQCIDIDQSNNSLRTQDCASQTQKQNCDHSSEELRDALKKIDRLFDLTNNVYNSISRLIKETPVPCGNCMLGKNASGSGAQSISAGDIGENIRKCNELSIELEGVKLDAVITESRLSNNIYQNSKAIEQIHSQMQNIQNITTDERSTIANREQSNTHTISKQNEISENPCNKSVVLQDEQFCLSHGHQSDKLQSKVSNNSNSVRDYQCENSKSNCNTVEGKLQGQPFSRCKTKTTLPMCLGNLPLIELPSSKMQKNKQSKLPNKKKVYSKGYRHGYYAKRQINTQSQRGITKTTDRIPLDAVTKPSTTTKSERLVELPRICSWDDKKKNLAISVRITQRQNYHHCYSNNTLNINSKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LV71</accession>
    <name>A0A6S7LV71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042916">
        <property type="protein sequence ID" value="CAB4045882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LV71"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="18100" checksum="F751701C2864422F" modified="2020-12-02" version="1" fragment="single">STSSNSTRSSKNRKSAQKVPLVSFGSLRAERPSDEATDTDGGERERRKRFNKKKFENEARTTSDEISESETSAVEQGISKSSSREKSEKITKRSHPIKTRIRFNETKDTHENSVRETNFNERNDSRTYPTTRTTTGLIVNDTEENIVKHAKSTNSSKRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DA49</accession>
    <name>A0A7D9DA49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086396</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000274">
        <property type="protein sequence ID" value="CAB3980262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DA49"/>
    <dbReference type="OrthoDB" id="5989585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19642" checksum="D366C3D29BDF1C6C" modified="2020-12-02" version="1">MENRQETTRNLNYLKNALTSGDVNRISAICREMKIKYDVADQLRKHHGNMDFAERLPNDMYSQSLIPGDVPCRLTAKRARANRSCFFNSLSLILAGNENMSEQLRILIAIELFENPEWYCDPKRITDAMDIDEGRGLSETSLFLMTTSCDGIKPGCDRKSVIKDVAIKTCDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DD91</accession>
    <name>A0A7D9DD91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A010945</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000551">
        <property type="protein sequence ID" value="CAB3982892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DD91"/>
    <dbReference type="OrthoDB" id="536372at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031410">
        <property type="term" value="C:cytoplasmic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001764">
        <property type="term" value="P:neuron migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029865">
        <property type="entry name" value="KIAA0319-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013980">
        <property type="entry name" value="MANSC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011106">
        <property type="entry name" value="MANSC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46182">
        <property type="entry name" value="FI19480P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46182:SF2">
        <property type="entry name" value="FI19480P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23597">
        <property type="entry name" value="KIAA0319_N"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00765">
        <property type="entry name" value="MANEC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="922"/>
            <end position="949"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="484"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="584"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="967"/>
            <end position="989"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="591"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="606"/>
            <end position="617"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3982892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="989" mass="108501" checksum="069772D409064FC7" modified="2020-12-02" version="1">MLLKSLKESLYTNLSVYLSVPLLADYFQQCTKTPIEENVTLKGGIGAGTFKKMGKVTEMKSCIHLCCKEMSCDVAFMSAQNCYAVECVSDDECESTTTDTSDVQVLIAHVKKVAKKSSNTTLDVLANPGLLAKKSPLATGANPAMAGMAGQCKAGKIFKEVTLHGGINAGTYKDMGMVNNGMPECQKKCCGFSACDLAFLLGGRCYLVGCADEKSCQMNKAKPSVYTPTISYVTRWNTEGVKHTVHFESPGDSIQFTCPRMTPLTKVTLKGGLKAGDFTDVGKVGKLSDCYDICCRSKKCDLAFMLGQNCFSVKCYNKDLCRTIPAQPSIFNPQIAYVASRDKISLSTAIEDKIQGNDVQTVTHVTCPKGHVVNKVTLSGGLNAGKYRDHGKVQDIQQCRRICCEIPKCNVAFMISENCFSVECKTELGCRTQPAVSSQYHPRISYVRFIGSPNIIGVFNDMNDTVKNSTKSLDDLLNASAAKQPVNSKITPKPLGTKEDDLPQIPPPKSKAAHQKPKITVPPPKPNILLMNGDTTDLASALQSSKPATPKPQKNQTALKNQLKNVKAGQAMSLQMVNGELKLTSTQDGKTNGKENENKANLKPAPNQQKTQGSSEKNNCKAVKHIKDVTLSGGKGAGTFTEHGQVDSMDKCVDFCCKEKKCNLVLLLGKACYSVACKDKKSCATSPAPPSNFVPQLAIVRPMETNVKKVQRPAIPETPKSLKCNYKPTTNDKKLIKGRKAGTFKLAKDIHSMKNCMAKCCDESMCDLAYLERGKCFTVTCNSPDSCATAMVKDDEESSLMAFTSPVEKPSVKETEVNMEENEATPSKDSHCKTMKITRNTKLSGAKLTDMGEVDRLDTCIAHCCRKDSCDVAYMEEQKCYTVQCQDGLQCQSFRKPADKDKNTYIAYMRRTVDDAEKERDWVIVYVIVGSLVCASGLSGIIWASCICIKRNRLRNKRRLIDDASEEEEEEMIPKQYARYNNPVPRRYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIQ4</accession>
    <name>A0A7D9DIQ4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A076167</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001066">
        <property type="protein sequence ID" value="CAB3986753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIQ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="6">
        <location>
            <begin position="385"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="72"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="438"/>
            <end position="461"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3986753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="461" mass="51958" checksum="433A7DBD596D421F" modified="2020-12-02" version="1">MKFRRHARKPGEDIQVFAYGLETLLSRAIPNIGNDERDTLLKQQFIEGSSPALKRELLQRPSPKYEETVKIPQQLDFTPELSSPNSDHDVEPDESSERERIEQRVNSGAPVKGNPTTTTPGKLPRADPLLVLVSTREGSAIPINSVLPTAIFIKATLSGHLQPLSRRYGATVSLVNKNTVQGHIRECKLKARGAGGENLHVIGMTDIHVRVNGLNVVHTFVVVNMQNQCIFGVDFLKANGKVVNIAQELLSWDSGETRLLIEAAAPTLLDKYVDVFVNVSRRVFVNHPHLPDEEIVIGVRPTLIETEWSLEEIYQAQHDDPVASTVHQAKLNTPAEQEAPSDWTDDSELRRYRQVWKQLEIIVGVLHRRVSTSGRKDGLVLVVFRKMRADLLRLSHNDPSSGHMGINRCVERLQPWYYWPRMTSEVHLWVAECGGCHQRKSSSASHRPPMENIQVSQPMEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DRA8</accession>
    <name>A0A7D9DRA8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A046491</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the tectonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002023">
        <property type="protein sequence ID" value="CAB3992325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DRA8"/>
    <dbReference type="OrthoDB" id="166585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006624">
        <property type="entry name" value="Beta-propeller_rpt_TECPR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051513">
        <property type="entry name" value="Tectonin_beta-prop"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23250">
        <property type="entry name" value="DYSFERLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23250:SF3">
        <property type="entry name" value="FISH-EGG LECTIN-LIKE ISOFORM X1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19193">
        <property type="entry name" value="Tectonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00706">
        <property type="entry name" value="TECPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="RCC1/BLIP-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00038331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3992325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="388" mass="43001" checksum="F3A2F72C2975F1E8" modified="2020-12-02" version="1">MTDNSSYIPGHGNSCDIIEAKPLKGKRYDVPTMQTFCVRLSGECFIRCRGNSECQSFGIGVVDECLGQLQCRLYSQRTVERSDLANDKKYTYYILEAPTCCEEPCTNNKVCRPSTCKCVCPDGFGSNRCMCPDHNMSRVFDKDSPVMLPGVMKQVESGNQTWGVTDDQKVWVLRNDDTWQMLGQDKFNYISVGKAGVWALDALNDVFVRKGTDTQNPFGTGWTLVSSPSQKLVQIDSGSSGVVYGVTRENQIYCRAGITQQTLSGTSWVNVSGTAKHVSCGDYGCWAVRPDNTVGFRQGVTVQNCAGTEWNDFSGKADVTQLDSGATGAVYAISTNHTLQRLNGICWKIPWGTKNWKEVLPRPFKHVTIGDTHMYVVADNGTVWKFSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E395</accession>
    <name>A0A7D9E395_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031849</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003486">
        <property type="protein sequence ID" value="CAB3998991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E395"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7219" checksum="48EF7C6CD026C6BA" modified="2020-12-02" version="1">MEHKEEGQVAQPGHMEEYLQKFPNNNCTINEDQEALIDPINEEQEALIREHANFSPVDPSSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E706</accession>
    <name>A0A7D9E706_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004153">
        <property type="protein sequence ID" value="CAB4001676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E706"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="19901" checksum="16A71222CE54B372" modified="2020-12-02" version="1">MCDWEKTKEIDVTISSWSGTVEEQIALYEYILAKFCWYIIRENLNDRGKLCLDREDAKTYDHWCDQLTRVFIQHFTVINECYEEVLRRLKCDMLFKPDEENSMRQHPTYYYDLIRNDLERYACVDRLINLVYMLTDTFRVYAFSSDEEDEQCTDKGKSDDEEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDD9</accession>
    <name>A0A7D9EDD9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110247927</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055364</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005690">
        <property type="protein sequence ID" value="CAB4007079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EDD9"/>
    <dbReference type="OrthoDB" id="5987220at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="33196" checksum="9AC98957E36C8B6E" modified="2020-12-02" version="1">MLWVDPAGTECRWHLQIKRGVYNVPGPNSLWHIDGNHKLIRWRIVIHGGIDGFSRTIVYLGCNTNNEANTVLDLFTNALHQFHASHRIRSDHGTENVEVAKWMLDHHGTTSNPVLTGRSVHNQRIERLWRDAAQSFIGLYQRLFYFMESHQFLDPLDEVHIYALHYVYLPRIRRSVEEFILQWNNHPLSSEKKKTPCQIWAEGFYSHANSNQHADPINYGFDDNGLLPELQTNNPVVVPRSAIQLTEEQMIALLLAINPLEDDHNYGIDIYNHAVQTITGIIRPTDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDJ8</accession>
    <name>A0A7D9EDJ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">S-phase kinase-associated 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005934">
        <property type="protein sequence ID" value="CAB4007847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EDJ8"/>
    <dbReference type="OrthoDB" id="2095648at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="362"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="638"/>
            <end position="667"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="362"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="644"/>
            <end position="658"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="699" mass="79607" checksum="47A25AB1101261F1" modified="2020-12-02" version="1">MTNQRVVGELDEIVLNIFHFLDGNEVLKCSLVCKRWHRIANDNSLWQNLVLNRWPSQRAVLGQVSTLALHWQKLYRYLLGIGNYSPDDMKYFIICKLGESFLDSDELQRAVFNAMEDVNLRWEKPRLYELEETSPRFFNSNMELYYDTHDLKWVFVDRRREYVDDSFTIRLNQDRMTSRQMRFIRPYQVMASCVMMYRWLTLFKYMFMEDVGLAFYRIWRFRLKHSETGSIFETYDWKAAMSSTFSHGCPISIKFRDDGLTVLNMLSSPFFVTHPLGNTYKISYEIPFPVYSESVFSSENVSRSSSIETLDNIKSEPKATEFLPALKAGEFSISPVLALKAGEYSAMPTVASKGITQSFSSDTLSSYSGKSGNDEDQESEDNGDDCGYFCNCEYFIHRSSWEYEEQQMTQAEVATKWEAIIDHPQPTFELVFDSYEEKWLFFCCDPKNLKCPEKLNRQVIEKSLESAKSIRDDPDENEIARSALEIADSAQENADSAPTIADAASTSTCIVTNDTSILDCIGAAIASMPGTSAEAEQTNLSLGQEAMPSSLTLYRLICLFDLASPQYKSSEECCVWSVCLQHRLSRGIVQLKDLNGWLRVFATLNRELRLYCSDLTVMSLNQNIGFLDDKNLSCSSKTKPEGLSSTSSDNQSEVSSDGSSEDEFGNPLEKFKKDTCALLQLLVNQKFAHPYGTVAGAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJ31</accession>
    <name>A0A7D9EJ31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Deleted in malignant brain tumors 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A068181</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006398">
        <property type="protein sequence ID" value="CAB4009280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJ31"/>
    <dbReference type="OrthoDB" id="536948at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.250.10:FF:000001">
        <property type="entry name" value="Lysyl oxidase 4 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071:SF18">
        <property type="entry name" value="DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071">
        <property type="entry name" value="SRCR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00530">
        <property type="entry name" value="SRCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00202">
        <property type="entry name" value="SR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="3">
        <location>
            <begin position="88"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4009280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13546" checksum="231696DBE8BEAC66" modified="2020-12-02" version="1">MFLSEHSLAYSDLQIRLVNPKNNKTAGRVEIYHPSFGWGTVCGLPPWTIVEGGVVCRQLNFTGANATMWYKSPYGQGSGPTLLNNIKCTGNESYIWDCSQPGWNVYDSLCDDLDLDVGVDCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F082</accession>
    <name>A0A7D9F082_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">adenylate cyclase</fullName>
            <ecNumber evidence="3">4.6.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A069957</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>ATP = 3',5'-cyclic AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:15389"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58165"/>
            <dbReference type="EC" id="4.6.1.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020010305">
        <property type="protein sequence ID" value="CAB4019118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F082"/>
    <dbReference type="OrthoDB" id="10261550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007189">
        <property type="term" value="P:adenylate cyclase-activating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.1230:FF:000048">
        <property type="entry name" value="Phospholipid-transporting ATPase, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032628">
        <property type="entry name" value="AC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45627">
        <property type="entry name" value="ADENYLATE CYCLASE TYPE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45627:SF30">
        <property type="entry name" value="ADENYLATE CYCLASE TYPE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16214">
        <property type="entry name" value="AC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="648"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4019118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="648" mass="72763" checksum="FD6EAA6034208CA9" modified="2020-12-02" version="1" fragment="single">MRVESPPNKIEPLEENRAFSSIEEYKMRQSEDEFSQSDNNVAQPRLSCPCFPESIRLTFTSPKLERIYQRSNKRERLKSNLFCALFAVVANVVLLFIHAFSGLGSSEQRTNVIVISGVSIAIFTCMFVACFRHCSPGYNVSMFVWLFAGLEALLILGLGEDPLTPNDLVGTFTFLAFLAFILLPMRLRFCIFWVTVLSVIHSIIVGVSSERLDEYSSNQIVANILLFLCAALMGVIDFLLADRRQRQAFSETLKSLQVKMKLEFQHVKQQRLLLSVLPSHVSKELEDDIQSDGTILKNGNFNKIYIERVECCSILYADIVGFTELSSTCTAEELIETLNQLFAIFDKLASKHNCQRIKILGDCYYCISGLDAAEREKGDNNHAASAVNMGLGMVNHITKVRQQTGVKSLDMRVGIHTGAVLAGVLGQKKWQFDAWSNDVTLANKMESGGIPGRVHISATTYERVRDLYEVEEGNGHVRNEYIKESGIKTYLIVGKIKSKAKEKWETVPLLVMPDCEVKRRTSSPIVSLLGTTARKALKTKETNGTEENGTPRHHVEISMPEKTEDSFEKSEINDDRLRDEEQLMHNLSKVLEQSERTSGKVNPFTLKFVDPRNEEKYSAQTEGGCAVSFAGVCLVLVFSFLVEITILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HFK5</accession>
    <name>A0A7D9HFK5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transient receptor potential cation channel subfamily V member 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071259</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000301">
        <property type="protein sequence ID" value="CAB3980552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HFK5"/>
    <dbReference type="OrthoDB" id="6108356at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="36654" checksum="746B1584833A9A24" modified="2020-12-02" version="1">MSQEGKYTSVEMDEKKSDEGNNDLEQPFDEEFWLKVQKKFDSEGISWSRAMDEVRTERLFEKHGKNCLLVIIRDWPISDDYRDQPDLVASLEYMISRFTEIILEKVDTDTDYEDFRDEEDETEPTLLHLAAAQNFSHVAAHLVRHYPSLVYQDTEVVGEQRAYLPVEMALMAYKDETAAFLISQMKPDWVHELFLYNANLERAKFSFGQLINHRNPLTNEPDMKKTVVAVLDCLINPHWPYLSQAKKEASKDSDHIERAWTSVPDDPLNYDFYYHVLDGDNEGRQPKINGEKNKEFDAKSKSCLRHLTESSNKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I019</accession>
    <name>A0A7D9I019_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012828</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002987">
        <property type="protein sequence ID" value="CAB3996960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I019"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12751" checksum="5011DCAD618CEF43" modified="2020-12-02" version="1">MELIGRNDSVESVLQKDRRSYSMGDSDSMKPTAKARRRPSVGLLAEVLGDYARHEEETTLNRQRYEEAMLNVFGSKGVITPQSEHTGPTLPLPSLCSEHLSNPHFAFYMGIIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I064</accession>
    <name>A0A7D9I064_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger 862-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A021216</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003250">
        <property type="protein sequence ID" value="CAB3998022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I064"/>
    <dbReference type="OrthoDB" id="5979169at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057456">
        <property type="entry name" value="Znf_C17orf113"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF5">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25431">
        <property type="entry name" value="zf-C17orf113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C17orf113 probable zinc finger" evidence="2">
        <location>
            <begin position="102"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="201"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="519" mass="58778" checksum="698F97F0273D5B76" modified="2020-12-02" version="1">MASQKRDIRAFFTSAQRPEALEAVEGVSRNSDNSVDELNDHLDEDHEVAVNLEMDSDMCVSDEEEGQPLLKRMNSLPPRKQRKKARAPPVFPKKWLSNPKYKEWLRYDVQHNTMWCDFCRSNKICGVWAEQGTQNFRKKTLLVHMASNDHARFALARNPAQSTVVKTREKMKKQEARSYKSALRTVYWISSEEIPNCKYPSLLQFQRKQGVKDIIQMNRGKNCKKESPESFHELLHSLSEVFQRKMLNHLNSSPFIGLGIDESTDRSQEKHIAAVVRYVDSNETKIKTSFLKLSVITSGTAPAIVEAVKKILGDFSIPVNKLTGLGIDGASVMASDMNGVLGLLQRENPFLIGIHCINHRLHLAVSKAAKDIKNVNTLSTILSTIYQHVNNSPNRLQKFKNLADVLGAINHDNAPEEGNENIAPSLKYLKFKRIFDIRWLSVGEAVKAVIHNYQPLLILLEEEAANDEPTSMGLLEKLSSYKYVALLHLLGDVVGATNHLCRIFQYRDISFSTLQSQVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I561</accession>
    <name>A0A7D9I561_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107336737</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016523</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003879">
        <property type="protein sequence ID" value="CAB4000606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I561"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="233"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="240"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="394" mass="44829" checksum="B620565AF7DF7D9E" modified="2020-12-02" version="1">MATMPIVNPMPPFDPDSDIGANIGPKWKIWMEDFEMYITTNGITNKAKKQALLLYQAGAQVRVIFRQIPDNGDDKDYKAVEKLNKYFEPQKHRLYKVYKFREARQDVSETLDQCYTRLRSLSTRCEFADPDFEIMVQIVVCGRSSLLRKQALRDPKLTLKDLLVLGRQCERSRQQAAEIEEGTRNNQTGMNDDAVVDAVRNTPCWKDIAKRAKGKECRKCSKLNHFARVCQSAPAKARGQRQDRGRWQGRHENKPIRPLNVSDNESSDSDNYCYSVNDTKTQNPYTKLKINNRNVKFTVDTGSSINIIDQQTFEQTKTNIKAYAFNSNVPVKMNGKFTTIVESRRKITVTTIYVTKANGGCLLSGSTAEELGLISWHLNAVQITTSSQTAPTFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I5B5</accession>
    <name>A0A7D9I5B5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055459</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004206">
        <property type="protein sequence ID" value="CAB4001911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I5B5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="9143" checksum="3389F429166BEDC5" modified="2020-12-02" version="1" fragment="single">MANVIPSPLTRIVTVSKYRKMLHVMSYPSWRNNGTNKRYLLLTLSMLHFIQGGVINGSMLALELMGRDYGGNGGVIINTGSDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IA19</accession>
    <name>A0A7D9IA19_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A084349</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020003895">
        <property type="protein sequence ID" value="CAB4000686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IA19"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18037">
        <property type="entry name" value="DEXSc_Pif1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF7">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="811"/>
            <end position="837"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1018"/>
            <end position="1051"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1020"/>
            <end position="1051"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4000686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1083" mass="121551" checksum="7250176C32B10A77" modified="2020-12-02" version="1">MLSLNQHKVEMLVDEGYSVFVTGKGGSGKSFFLRNIIEKLRRSGDHCFVTAPTGIAATNIGGSTVHSFAGIGTGSKSAHELIATIKANEEVLARWEQCKVLVIDEVSMLSRELFEKLEMIARCLKRNAKPFGGIQLILSGDFYQLRPVIQRDASDKEVYCFASPMWNCCVDISVFFDENYRQHEPELIHLLEEFRMCGLSQRSHQFIEESLTRPLDCNPLDVVRLYSHRDNVSQANDECLALLAGEPHHYCSDDSGNVNSLKKCSAPKNLAVKLNARVVLLKNLSIGLVNGLRGTIHSFVDGFPFVVFDNGSRKLIREELFTVEDECTVVATRKQIPLDLAYAMTIHKSQGMAFPLLDVDLSTVFEAGQAYVAVSRATTIHGLKISSYRERMPQVSQLVIDFYANGVVMASDLNVDEIVHSEKKRDITTLSLVSIDKCISVSSTAKEPKPFVVTEQFLSHKLPQGVMDNVHKLVKKESEISDDVSSVLKKLNLKENEQHELYSDSEMCLEDYCTWLWQSYEQIHSTDKSGTLIDRKKFSGVTKQLHSLYRSSQLLQKWKDCSKSDVDIGIGGKDRKAAIVYARALYAEFVKQQAANTRNDYFNDPMQFEEGPVQSTTKEASGKVRDISGWVIHEEIKSCISYVSQHKCSKSQKVVKEVAHKRKMKAMLDQMKGCKDDVLEKSNYPESLEHIALYDKGGKTYVPDVVFEFFMDVSSVASELLSNKNIHAFKQDALSVVYTKIKSNVELQESFLRLTDNDVEGKSCDGNQNDDEETVLNDIACEDIIEDDMTNELLLPVSDDDLEWMDLGEPSDCPEVHESDGEDSTPNEVAGKLDNNQPIISGYQTGNSFDLKANEITCNVIKGNEASSDMVFHDKATADLFNRMIRRFCNMMASETIRKFKRNHQLKKSSALRQGLQARGATRKKKQSQGILTIPVIITDPVPKSATHFSLKALAYKGDTVFECYSHVDMNFIMMGYNIPPSRENKKTKSKRLVETLKISEVMPSPEKLTQTLYNDMKTSRNTSNPVNTQETEQGAENMGHPTTSTNKGTSRKCSYCHECGHRKSYKGKITCPSLASIQNAKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAQ2</accession>
    <name>A0A7D9IAQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036736</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004894">
        <property type="protein sequence ID" value="CAB4004397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAQ2"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12377" checksum="16C532857691F763" modified="2020-12-02" version="1" fragment="single">MVNDIEAKHPQTNNLVKFADDLTVSVPVTSSGDSALNFPLSELTKLFDSLILSLFYYAIEVWGSALQAKYIDKFSKFLNRAFRYGYTQNKYSMAKMIEERDRLFFNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBB7</accession>
    <name>A0A7D9IBB7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BTB POZ domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A023506</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004130">
        <property type="protein sequence ID" value="CAB4001595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBB7"/>
    <dbReference type="OrthoDB" id="5946597at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="136"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="9"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4001595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="27055" checksum="F2EC0EBF64720EF1" modified="2020-12-02" version="1">MTQQTSHEVQAEEMKKDIAEGGMDREPKVLVAGGWDGTKHLNSVEMFSHSNATWTPLKPMKESRTRAYSLELPAPLKGHCSVVYNGRLIVIGGYDGGIYSDSIIEISLLPPYTNKLLTAMPQSRCYHGIAMFGDKILILAGTVLILVYSTKFASVLLYDIIKNECKELAALPYPVSDMATVKWGDDSVIIVGGAGSNIQALNKVLLYNIKTQKSRMLPDMKYKRRGCVAAVVRDTVIVMGGRDERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBL6</accession>
    <name>A0A7D9IBL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004290">
        <property type="protein sequence ID" value="CAB4002212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBL6"/>
    <dbReference type="OrthoDB" id="6781885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="448" mass="50741" checksum="F43870269E458454" modified="2020-12-02" version="1" fragment="single">DGNHEKASNNRPLSLLTFLSKICEKVALNQFGSYLMKNKKLSTHQSGNKKHHSCETLNLLTGDTILKAMDGKLVTALILIDLSKAFDSVNHTFLLTKLSNVGASPSVVKWFESYLTGRTQSVRIGSTVSTPLPVSYGVPQGAILSPLLFSIYTNDLPSSVHHSKLKSYVDDSKILLSFTVANVDCLKQQLEEDLYLIANSCSKNELLINPGKTKYMLIGTRQNLQQLPVDMTINFLNETITPVSFAKDLGMTIDSYLTYDQHITNLVSSCMNSLCQINRVKKCFDKEALTLIVSALVMNKMFYCSTVWSNTSSTNIKKLQLVQNFACRIITNIGKFDHISPGLRELNWLPVKEQLLLREAIMMYKCVNELAPHYLSDLFTKRSDIHQRDTRSHDSLQIPLYKTSAGQRSFHYRGVTLWNDLDIKYKKLDSLKTFKNELKRSMLEQIYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IIU5</accession>
    <name>A0A7D9IIU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011891</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006585">
        <property type="protein sequence ID" value="CAB4009830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IIU5"/>
    <dbReference type="OrthoDB" id="5987289at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="262" mass="29826" checksum="99B40EEE80FC35D8" modified="2020-12-02" version="1" fragment="single">MASCDSKNSSWISDLVGGGKLPVLWLKDGKHHLYDKYKEECCRRGSRPISRTKFLEGLNAGNFKEMVEMAGLCNICDEVGARNFESLDALLSSLDEEIKLHKPKPSLIAETPEVDCGRGIVSQVVTMVDLSNHEDDKQQIDPLPYDSPILMVEVEPGLSDLPLTQALRKRLKGFRGHLLSEFQQSLSSTSNTPCHCMTWLLEAEPKCKDHEEICNKCFERYLLFEDIQECVYHSNLPKERKVHYKELLDGIELKSRMYIAHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IL78</accession>
    <name>A0A7D9IL78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022612</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006134">
        <property type="protein sequence ID" value="CAB4008476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IL78"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12008" checksum="04F627EBBC889FF6" modified="2020-12-02" version="1">MVEGEGNLSQQRAVSLLQEATRMVREYPGSSNDVSSAQVANPNVISQSESHATTSSGGTAVNTLNSERVLGNFRNLFALYGHTGRRCLSSSTQLFPNEYVYNTYIFVLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPD5</accession>
    <name>A0A7D9IPD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006816">
        <property type="protein sequence ID" value="CAB4010520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPD5"/>
    <dbReference type="OrthoDB" id="5988199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="265" mass="30071" checksum="71B0692A1BE76E25" modified="2020-12-02" version="1" fragment="single">MDRMVEDLDGVEVIMDDVIVAGDETTHDKRLTKFLERASTQGLKLNREKCKIRQREVPYVGHLLTAEGLKMDPRKVEAIREMPTPNSKEDVKRFLGFVQFLSRYIPGLSKVDAPLRGLEKADVLFHWDQPQQTSFEKIKELVSQSPVLQYYDVTKPVTIQCDASGKGLGAVLLQEGKPVCYASRALTDTESRYAAIEAEMLAVVFACRKFHQYIYGRSVVVETDHKPLQAISSKPLSQVPLRLQKMILNVRGYDVKIRYVPGCKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IVA4</accession>
    <name>A0A7D9IVA4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A046967</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009766">
        <property type="protein sequence ID" value="CAB4017915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IVA4"/>
    <dbReference type="OrthoDB" id="1292175at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF17">
        <property type="entry name" value="HAT C-TERMINAL DIMERISATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="2">
        <location>
            <begin position="3"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="429"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="512" mass="57526" checksum="5132F652D4C2724E" modified="2020-12-02" version="1">MEVKEKITNDIKDAGVFSIMADTTPDVSHKDQMSVICRYVDHDGAVHERLLDLKEFREKTGEGQATAIIQSVDQNGLDNKSIAFQSYDFTNSMSGKYNGAQAVVSRLLDREVPYIPCQGHRSNTVNEHACEASPIVSELFDTLQATYSFFSGSTKRYAVLHDELQNVENSLILRNLSLTRWTARAESLRAMWISYEAVIEVLRKISNDGSVDAKGKAAATGLLAKVLRVDFVVSLMFMRIILWKTKVLTESLQKEDLNIVDALEALNGTVKSLQDIRKNDEGIANQIQASTEVLSGKYVDAAGEFAKLHRPRSQPRRLDDNPESAAEISMMNFYDREFKEVLDILIAQYKDNINASLEKVKALSIGLQPPLSSHHEEKDVKDLLNLFPLQAPDQAAFTAEFEVFVNVAMNEGNTNPIQSLADAAKEAEKRKHIFPLTSQVYRLALTAPVTLAENERTFSKLKTVKTALRNSMSDHRLQNLILLNSEKDITDSVDLDILVEKWFMKTNRRINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWW4</accession>
    <name>A0A7D9IWW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057882</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009844">
        <property type="protein sequence ID" value="CAB4018082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWW4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="15426" checksum="031D9A4E7186BFAA" modified="2020-12-02" version="1" fragment="single">MHRYRRPNYSNVPMTKLFQRTDDQLIPTYRRPNNSNVLTTKLLQRTDDQVIPTYRRPNYSNVPTAKLFQRTDGQVIPTYRRPNYSNVPTNKLFQRTDDQVIPTYRRTKLFQRTDGQVIPTYRRPNYSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J4F8</accession>
    <name>A0A7D9J4F8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">USP6 N-terminal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011537">
        <property type="protein sequence ID" value="CAB4021632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J4F8"/>
    <dbReference type="OrthoDB" id="5985259at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.472.80:FF:000008">
        <property type="entry name" value="TBC1 domain family member 10A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.80">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000195">
        <property type="entry name" value="Rab-GAP-TBC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035969">
        <property type="entry name" value="Rab-GAP_TBC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050302">
        <property type="entry name" value="Rab_GAP_TBC_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47219:SF9">
        <property type="entry name" value="GTPASE ACTIVATING PROTEIN AND CENTROSOME-ASSOCIATED, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47219">
        <property type="entry name" value="RAB GTPASE-ACTIVATING PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00566">
        <property type="entry name" value="RabGAP-TBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47923">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50086">
        <property type="entry name" value="TBC_RABGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19473" checksum="82C450E57A259FD1" modified="2020-12-02" version="1">MLVSLFERPKYLSGYFDSTLSKIQRHSQVFERLLSQKMPRLYRHLKENGIDPLLYITPWFMALYTSLPCWDSVLTIWDLLLLEGVSVIFQTSLGILHIISDELLSRTGIAQILPILLRLPAERLKRSYFVPVMWRWTIFSWEVNAVLAIITDTSNVQSNQGDVHQCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JA16</accession>
    <name>A0A7D9JA16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A036288</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013399">
        <property type="protein sequence ID" value="CAB4025079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JA16"/>
    <dbReference type="OrthoDB" id="7312725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="2"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="2">
        <location>
            <begin position="101"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4025079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="16272" checksum="15560084810B3C3D" modified="2020-12-02" version="1">MASEALLFLLVGTRSHRKCPIGYFLGHKISAKDQAKLVSKSLEMAAKAGLKVWSVTADGTAVNLRTFEILGCSFNGSYNEMTTSIIHPTTGEEVFIILDPCHMLKLARNALAHLGTIVDGEGNAIRWHHIEELQKLQEVEGLNLLLVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JA24</accession>
    <name>A0A7D9JA24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A034424</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UPF0400 (RTT103) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013457">
        <property type="protein sequence ID" value="CAB4025171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JA24"/>
    <dbReference type="OrthoDB" id="10069473at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097550">
        <property type="term" value="C:transcription preinitiation complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042802">
        <property type="term" value="F:identical protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000993">
        <property type="term" value="F:RNA polymerase II complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031124">
        <property type="term" value="P:mRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001111">
        <property type="term" value="P:RNA polymerase II promoter clearance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd17002">
        <property type="entry name" value="CID_RPRD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.90:FF:000007">
        <property type="entry name" value="Regulation of nuclear pre-mRNA domain-containing protein 1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006569">
        <property type="entry name" value="CID_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008942">
        <property type="entry name" value="ENTH_VHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032337">
        <property type="entry name" value="RPRD1A/B_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12460:SF0">
        <property type="entry name" value="CID DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12460">
        <property type="entry name" value="CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04818">
        <property type="entry name" value="CID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16566">
        <property type="entry name" value="CREPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00582">
        <property type="entry name" value="RPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48464">
        <property type="entry name" value="ENTH/VHS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51391">
        <property type="entry name" value="CID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="139"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="148"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00034310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4025171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="36056" checksum="E3CBD816438B3031" modified="2020-12-02" version="1">MSFSSSALEKKLGELSNSQQSIQTLSLWLIHHRKHAKTVVDVWLKQLIKAKASKKLTYMYLCNDVLQNSRRKGAEFNKEFVQVLPNAITHCSKELTPEMQKSLERIIGIWSQRGVYDSGMIEKLQSSLALGSSRLSPVAKRPRIEVETNNEDNEGDDDDDVVSESDDSVEPPDSDYLIKALQDLERSASQDAEVRERIANLPTEVQDASGLEKIEDRESAEKLAKVVESACVLLADYNGRLSAELDDRTAVCKMLRAYLSSQKKKVSDCDQRIERYKAKLEKVALVRKELRSHLDNLPDLSLLPDVTGGLAPLPSAGDLFAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JEX9</accession>
    <name>A0A7D9JEX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065879</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015433">
        <property type="protein sequence ID" value="CAB4028364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JEX9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="8855" checksum="E041A4730D317364" modified="2020-12-02" version="1">MRTIGDSITETAGPERQLDGTAWTTGIGVATVCRRRVTSVVTELTISWSCWGVIAEAGARGPAVAGRGELDEGTVVVVPEAQGAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JI37</accession>
    <name>A0A7D9JI37_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cysteine-rich motor neuron 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A012679</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016396">
        <property type="protein sequence ID" value="CAB4029771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JI37"/>
    <dbReference type="OrthoDB" id="5964883at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005520">
        <property type="term" value="F:insulin-like growth factor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001558">
        <property type="term" value="P:regulation of cell growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009966">
        <property type="term" value="P:regulation of signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000867">
        <property type="entry name" value="IGFBP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011390">
        <property type="entry name" value="IGFBP_rP_mac25"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14186:SF20">
        <property type="entry name" value="CYSTEINE-RICH MOTOR NEURON 1 PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14186">
        <property type="entry name" value="INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00219">
        <property type="entry name" value="IGFBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00121">
        <property type="entry name" value="IB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51323">
        <property type="entry name" value="IGFBP_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3 6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043456345" evidence="6">
        <location>
            <begin position="21"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="domain" description="IGFBP N-terminal" evidence="7">
        <location>
            <begin position="19"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="118"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="169"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="174"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4029771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="24785" checksum="FD365943087636D2" modified="2020-12-02" version="1">MNTIVSLAFLFVLSVYGAQGLSCYCRMARCEDTESLKRRCKGGLVDDVCLCCKTCAKVEGETCGGLWGLDGTCDQGLFCKGSDRLYMMTRGICAQQTPSIKVTTEFPTSWQNILKTTETSYSGDESGDNSESSGEETEKPTQETIELPIVDPIEFPTSWQNILKTTEISYSGDESGDDPESSGEETEKPTSKWSWFASPEREQTQETTELPTVDPTEEEVIVFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JK01</accession>
    <name>A0A7D9JK01_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046733</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017098">
        <property type="protein sequence ID" value="CAB4030734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JK01"/>
    <dbReference type="OrthoDB" id="6162903at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34494">
        <property type="entry name" value="PROTEIN CBG25024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34494:SF1">
        <property type="entry name" value="PROTEIN CBG25024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="454" mass="47708" checksum="AD2E449AEC085F3F" modified="2020-12-02" version="1">MGAVQSIPLVGEAVTVIDSGVKLVAAGACAITGEILDDEDAKKAAKTFVEDAGKTWVEYSERNVIAAPIRATVHAVDNKPEEALRVLGKMGHSVEQVVDNTPVVGHAKGVVHYIGGDTEHGDNCMKGASRSVAVLGAGALTGGVGGGAVLGGFAAVTGGVAYDTTVSVIESNVKDKDCPYGVIQSIDQVIESDKKRDGHGVISGLIDIGYATVGDFAAGAAAAKTAKSVKESIKAKKQRNALGKKVGKEGVKDVVDTAKELKSKTKDVKGDNHVCTKTKNLETGETKYGYNRRCRVEMRKNEFAKKGKASGYRSKTNAAKGHLDEFSREAGVLENAANETNMEINSVSNRAPRACAEHHSFNKLGTHGGESNIRTSSVMKTKGQFVTVERCGNCKQYGNLMGNVITDDVAGMPVPTTEFSKSSVALAGVAVIFCTKCGAKKCENEECHTENKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K992</accession>
    <name>A0A7D9K992_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051018</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031774">
        <property type="protein sequence ID" value="CAB4043209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K992"/>
    <dbReference type="OrthoDB" id="5947836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14170" checksum="95DA86A3C3A018AB" modified="2020-12-02" version="1" fragment="single">MNSDSEYLRKWLIANKLSLNVAKTEFILIGSKPMIKSISNKQPKIIIENKPIKQVYDCKTLGVTVDQHLSWKNNTENVCKKITSGISAFRQKKEFVEKDTLVSVYNSIVCPYYTYCCEVRDVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L3S9</accession>
    <name>A0A7D9L3S9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A036595</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013053">
        <property type="protein sequence ID" value="CAB4024471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L3S9"/>
    <dbReference type="OrthoDB" id="5969387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309">
        <property type="entry name" value="KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309:SF1">
        <property type="entry name" value="MYB_SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="117"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="179"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="123"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="26930" checksum="B81878073E8718FB" modified="2020-12-02" version="1">MAETNKHSSKSQVMIKAMKWTDQHDLELIKEILTERPFDNPKGSRRIGLVWEKIVDNLNSRADIVFNLKDIRAVRDRYNLLAKKYKKKEREEINASGIGTDEPSELEDAIEEAVSLFESQEEEREKEKTAKDEDRSQAEDARLVALETARETAKRKASGNDSFRAKKTAIVEFLRDKANQDNEYRNKELEHKTKELEIRKQELAIRSKELEAQTQQNQNLLNTLLEFAKNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LB55</accession>
    <name>A0A7D9LB55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A039302</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016164">
        <property type="protein sequence ID" value="CAB4029424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LB55"/>
    <dbReference type="OrthoDB" id="203724at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990072">
        <property type="term" value="C:TRAPPIII protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058541">
        <property type="entry name" value="Ig_TPPC8_1st"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058538">
        <property type="entry name" value="Ig_TPPC8_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058540">
        <property type="entry name" value="Ig_TPPC8_3rd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057651">
        <property type="entry name" value="Ig_TPPC8_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024420">
        <property type="entry name" value="TRAPP_III_complex_Trs85"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12975:SF6">
        <property type="entry name" value="TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12975">
        <property type="entry name" value="TRANSPORT PROTEIN TRAPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24545">
        <property type="entry name" value="Ig_TPPC8_1st"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24544">
        <property type="entry name" value="Ig_TPPC8_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24546">
        <property type="entry name" value="Ig_TPPC8_3rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24542">
        <property type="entry name" value="Ig_TPPC8_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TPPC8 first Ig-like" evidence="4">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="TPPC8 second Ig-like" evidence="3">
        <location>
            <begin position="32"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="TPPC8 third Ig-like" evidence="5">
        <location>
            <begin position="150"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="TPPC8 C-terminal Ig-like" evidence="2">
        <location>
            <begin position="364"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="418"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="418"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF24545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF24546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4029424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="542" mass="60892" checksum="E7C8043D7E341CAA" modified="2020-12-02" version="1">MYGEDNRLNIVIVKPMPRLEVTFCGFPTLLLCGEFRKVKVTFSNEGEGPLHKLHSASTNANLFAFDGASSNNENINISGSQKKQLSCFVKRVSKISLPDGCLNARDKIECTMWVQGRQKSGISNEELLFYYESADENPSMSHRTVRHQCTMKTSRSLAIRATAKRCKVTSQDDEIREDTEENNQLIVTLEVENLSLSEAQFRTFSVSQVCCVSKKWILKPLSRQKQDGVITINQGETVMTHFKAVRRREGSDLSISNLSFTDKETDISCLPYWEFFRRTNTWKELNEFEERTDSTMSVDLALVALWESSYIDSQLSKHTVHGQSEVAVITLAESISAPILAQPAKKPSLISSDVSTAGNTELYIKYTVDCPGMITHDFEKQRFCKATVTVTLHNCSQFTVKAFVEMLAHLLESNTDDSSVRKEEKAQAKSAQLSSNNSNHSLQCNSAFLWTGKRSKLVTLQPSQTMKLEFSVKIFKTGVFNLNHCRVLAVSNTNEESTLMVTQKPPPACLLVVRHSTEVDRDSGSLSPVGMLSLFYYEAVQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LC13</accession>
    <name>A0A7D9LC13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046636</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017406">
        <property type="protein sequence ID" value="CAB4031171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LC13"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18446" checksum="484674AABC968142" modified="2020-12-02" version="1">MVLNASITKLVWTHRKQKWCWAHPKLKWCLRIQNQNGVGRIQNQNAWCWRILNQNGVGHIQKQNGVAASKTKMVSDACRTKMVWRIQDQIGVGASKTKMVLDASKTKMLLDVSKTKMVLAHPKPEMVLYASKTGNGFVRIQNQNGVGASQTKMVLAHPKPKWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LMI9</accession>
    <name>A0A7D9LMI9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041768</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021298">
        <property type="protein sequence ID" value="CAB4035706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LMI9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="19195" checksum="ABF114DC70AE624B" modified="2020-12-02" version="1">MADSNKIQEEIEQDQKTLKEITKDDDSSKKKKCRKPDHWTGSVADQKELFLHILAELTTKQLRAENNNCMDFETYNKKHRQLISSNWQKAIGFFHRIVHGEWGVEPKPDKAGIDDKSIISDDEIASTLWKITILDMRPSGEEKPYGGVYIFMANAVCFYVKMVEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MC91</accession>
    <name>A0A7D9MC91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Serine threonine- kinase pim-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A019966</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040207">
        <property type="protein sequence ID" value="CAB4045552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MC91"/>
    <dbReference type="OrthoDB" id="5951403at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346:SF82">
        <property type="entry name" value="KP78A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346">
        <property type="entry name" value="MAP/MICROTUBULE AFFINITY-REGULATING KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4045552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14876" checksum="7B14287B32158D11" modified="2020-12-02" version="1" fragment="single">DKDLGPVPGEVYFLKQMKYHPNVIKFLHYQQLTSEMFVIICERIANCKDLFDVRKERGGFFTEYETQKYVKTLVDVVRAMEKKNIIHRDIKLENILYDVEKDDIKLIDFGLATKHKPGKLFTTFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FD73</accession>
    <name>A0A6S7FD73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SH3 and multiple ankyrin repeat domains 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067400</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000035">
        <property type="protein sequence ID" value="CAB3977205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FD73"/>
    <dbReference type="OrthoDB" id="6077228at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09487">
        <property type="entry name" value="SAM_superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052281">
        <property type="entry name" value="GAREM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001660">
        <property type="entry name" value="SAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14454">
        <property type="entry name" value="GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14454:SF11">
        <property type="entry name" value="SERRANO, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07647">
        <property type="entry name" value="SAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00454">
        <property type="entry name" value="SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="328"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="467"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="675"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="726"/>
            <end position="751"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="835"/>
            <end position="857"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="886"/>
            <end position="911"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="998"/>
            <end position="1056"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="354"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="467"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="491"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="678"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="735"/>
            <end position="751"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="838"/>
            <end position="857"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="895"/>
            <end position="911"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1000"/>
            <end position="1013"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1014"/>
            <end position="1027"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1028"/>
            <end position="1052"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1174" mass="132553" checksum="D4EBD20FF0CDCABC" modified="2020-12-02" version="1">MDEMEAAKFIKSLTWSDTSYALNEFLDTFGVPNLVCCSQEGGHYGMNDTCTFDNNQVLMLHALRTKHNLMAEDSDGRPISIPLKCENNLLLCPLSIYCKYDPIYVSQMSHVYPDIKYFRVLENHWNERMKYLKPESILEIEHIDARNFTVKFRDIDQPLPSNCRVVFEPLLDYCEYTLKSAISLFGLPAKVRFLPSQNANQELLDNEFENLVSNLGKVNIVHSAKPQTVVVAAKINADSSGLAKTSVPDCLQIPKDYNLNVCVAKGLLEKNPAYVNVVSKLNQAFLDKYDLKELDNLHKCQYLDELDQPSGNTKRIVGSVLAAKVHEPRNSGYVKLPPAPPPKPTPRRGREITPPTSDQQSQKSETVRQYETCKDTNEKAQNVGQYDDVKPTKKYAYKKDHHIYESISDDSSSNDGYEDIDDIDVTKITSHDYVDMTSHDYVDMTSHDYVDMTSHDFVARTSQAHVSMTSEDTMSGSDPENNRNENTGKSPRLEYKSENLTKTTKLESARKLLLKLPFLANPPDNKTSTETTRLETKLSPRLERKGENLTETTKLEPARKCLVKLPFPVDASTRRPDNKTSTETTRLETKLSPRLERKSENLTETTKLEPARKCLVKLPFQADASTPRPDNKTSIETTRLETKLSPRLEHNGENLTETTKLEPARKCLVKLPFPADASTRRPDNKTSTETTRLETKLSPRLERKSEHLTETTKLEPARKCLVKLPFPADASTPRPDNKTSTETTRLETKLSPRRLERKSENLTETTKLEPARKCLVKLPFQADASTPRPDNKTSIETTRLETKLSPRLEHNGENLTETTKLEPARKCLVKLPFPADASTRRPDNKTSTETTRLETKLSPRLERKSEHLTETTKLEPARKCLVKLPFPADASTPRPDNKTSTETTRLETKLSPRRLERKSENLTETTKLEPARKCLVKLPFQADASTPRPDNKTSIETTRLETKLSPRLEHNGENLTETTKLEPARKILLNFPFPVDLDNKNSTKITRSEPNSEASDKSIKLEVDNKTSQEVSSPTDLSAQNLKPGSDNSAENITLEPVSKKLVPKTKTRSTVPTRKPAFAIPKDQCALPIRKALCAIPIPTELSSLTVKGVGRLLTSLNMACYADNFQEEQIDGEILVELDETALKSLDLKPFHVRKLIKVIAGWRPNVDDNKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQE1</accession>
    <name>A0A6S7FQE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084693</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000429">
        <property type="protein sequence ID" value="CAB3981798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQE1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="17368" checksum="FB5E96FC1306DF66" modified="2020-12-02" version="1" fragment="single">KEKYELNRENEDIKEKNKNLFQSLSEVRAKVIELLDEKSSVITALKLIQQESVSLAEKEKIEDLESENKNLRAAARTLQEDLDKSNREKREFAKVKKRRENASIRPDTTISYELKNQFEVLSVSDYEEEVNKSASDLDQSEARQHKDPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQG4</accession>
    <name>A0A6S7FQG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031326</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000022">
        <property type="protein sequence ID" value="CAB3976960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQG4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15204" checksum="6A664219C3122B2E" modified="2020-12-02" version="1">MAVAVAGGLFNAFAFAGAGFLFKMFDKNGYAKEAHRHNTAIENLTAEREKYLEEVTDRRNRIAQLKSELAEANKDINATNKSLELVRRINELRRKAMPRKPQLSNHYKPSQEMEEYMAVFGLIAGGVVGGAAYLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYF6</accession>
    <name>A0A6S7FYF6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022657</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000528">
        <property type="protein sequence ID" value="CAB3982643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYF6"/>
    <dbReference type="OrthoDB" id="5960351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="128"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="25779" checksum="AFC0187F8F7A0A83" modified="2020-12-02" version="1">MSGESNLCTTRFDGKKCSMQIAKECLNVRSIKNITNFIQVSKLVADNDWDIFTASETWLNSTVNNADVNISGYKLFRGDRRHKRGGGVCAYIRDNLKAKEITDLSSTSENGFQQLWVRIQHIKLKSFLLCVVYRPPDCEITCLEEYLTPSIIEAHLYGKDIIIMGDLNYDLLSNKPESQALKDLCTMLNLSQIVTKPTRLAKESASLLDVILTTNLHQVISSGSFGKYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYK2</accession>
    <name>A0A6S7FYK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029189</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000382">
        <property type="protein sequence ID" value="CAB3981369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYK2"/>
    <dbReference type="OrthoDB" id="5979845at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12241" checksum="098B0D8181A9C9C1" modified="2020-12-02" version="1">MENFFKSGIDKDTVIHCLKYLSESKDLRAEWRKNVGDLTSNQEEAGSVILLQTITYLNVCKFKSKQQIIREQLSLKPQKQSKSLRQTLSAGTKLKKTYTSILIQTGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0J4</accession>
    <name>A0A6S7G0J4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000868">
        <property type="protein sequence ID" value="CAB3985398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0J4"/>
    <dbReference type="OrthoDB" id="6157941at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34657" checksum="1AEBCB0AAF8BEFA8" modified="2020-12-02" version="1">MEKCTAQFLIKLQAHSKIPKVAVNNIVEGTSILINQVKEHLKQKVISYINESDEDFTTESVEQIFDNFEDPLINLKTSYRQSSVIENNPNFVQPLHIADIITSHPSYCREGILYDICDGQCFKNNPIFQEHPNALQIVLYHDEVEICNPLGSHVGKHKIDLYYYTLGNISPKHRSKLRAIRLLAIVKAKDVSKYGQKKILTPILNDLQRLANGYTFIINGTPIELFGAVVSCLGDTEGQHQWGCFKVKVGWAHQKCRNCLCTFVNMQQNFRDSQFTQRSVEQYHRQCDDIERGPNDEIMKDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4F7</accession>
    <name>A0A6S7G4F7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DUF3445 domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058936</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000655">
        <property type="protein sequence ID" value="CAB3983779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4F7"/>
    <dbReference type="OrthoDB" id="497541at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021848">
        <property type="entry name" value="HODM_asu-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11927">
        <property type="entry name" value="HODM_asu-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="28167" checksum="99D5F6EBE2731B23" modified="2020-12-02" version="1">MVIDVENVENSFIWETFKDGMPYLGPYKTEMPGRIKMQTQKLDLENWVKIDRTYASQQREKERLLETKKDLVFVTNDDPSTVLAKHEFLELLCDYLPKRYPDKFEAREKGVYNKMLDEFVSSHPDESDDPLLKASRLTQEDWCIMEWKEEHQAYCLTAGAVFFPMTWALQQKFNLPMIGIHKPVTGFINHLVPKVYDLLKTMSSDAPVYRGNWNMSLDLDGVLDLHKPPSGHVERNEVNSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G903</accession>
    <name>A0A6S7G903_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon opus</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054128</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000452">
        <property type="protein sequence ID" value="CAB3982000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G903"/>
    <dbReference type="OrthoDB" id="10066937at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="191"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="277"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="332"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="195"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="334"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="42685" checksum="364E2C925C2E445C" modified="2020-12-02" version="1" fragment="single">KIPNCLIEQSTSDPPNAVGLSFAADVMKRNKQLILVVRETTTSFTTSCIIQNERHDTLRASLIFLCLELRPIFGPCAVIRVDPAPGFASLSNDEKLRRHKITVEIGRVKNVNKNPVAEKCIAELGDELLRISPEGGAVSPVTLAIATANLNTRIRDRGLSAREMWYQRDQFTNSQLPISDLHLIREQHSHRIHNQPASEKSKTPSGQRQASPALQVGDLVYITSNGSKTRARDRYLVVSIDGSWCNVRKFAGSQLRSSPYRIKLPECFLVTNNFTAPPPNPRLHQPHKYTPAAEPKAPCPPRVPEKLFLPPYNDDCVLPSSHTTCFPGPDYKHSPSNSYKADELTTSLPSPCQSPSTPAASEDSPAPRRSSRQRHSPVHLQDFVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9H9</accession>
    <name>A0A6S7G9H9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000472">
        <property type="protein sequence ID" value="CAB3982150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9H9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="13442" checksum="8292FFBDB6EBBD09" modified="2020-12-02" version="1" fragment="single">MTFAAGTSLGSSFFGNKSTAPTLTFGTPAVAAASSAFSFGAPKTTATTGFGLITKTTASSIFNAGGTGSLFSAAGFGTAASKGFGGFGTTTTAASKGFGGFGTTTTTSASKGFGGFGLTTATTANKGFGGFGTTTGFGTTGIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA72</accession>
    <name>A0A6S7GA72_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PhoD-like phosphatase metallophosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001647">
        <property type="protein sequence ID" value="CAB3990364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA72"/>
    <dbReference type="OrthoDB" id="10266805at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07389">
        <property type="entry name" value="MPP_PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.70">
        <property type="entry name" value="PhoD-like phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018946">
        <property type="entry name" value="PhoD-like_MPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038607">
        <property type="entry name" value="PhoD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33987">
        <property type="entry name" value="CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33987:SF1">
        <property type="entry name" value="CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09423">
        <property type="entry name" value="PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoD-like phosphatase metallophosphatase" evidence="1">
        <location>
            <begin position="83"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="342" mass="39595" checksum="42EA6C87D37D4908" modified="2020-12-02" version="1">MHTGSRDGKIFRSQSHISKYIANIDMVNCNSTLFILSVILIWFGEEIVCFENRMSRSDFEHGNKYVSRIAFGSCMNGMFNESKWHQRPQPVWKHILQQQPDLWIWLGDAAYGDTRIVPFLWTPSPLPLMASYFRRQKHHPDYQEFLKSNTSIVGIWDDHDYGMNDGGKNFGNRLQTQNIFLDFLDEPLDSLRRRREGMYVSYTFGQGDKAVKLVMLDVRSFAVFGTKCDLLGNEQWKWLEEQLDDQTLVALTIVTSGIQILPNAIRGLQNWDDCPNSYDRLVWLTRNRNKVIYLSGDVHYGETSCLNSSSSGYPLYELTSSGLYMACTIPLLNHEQCVWAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAG4</accession>
    <name>A0A6S7GAG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SDA1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052134</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001664">
        <property type="protein sequence ID" value="CAB3990464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAG4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007949">
        <property type="entry name" value="SDA1_MD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05285">
        <property type="entry name" value="SDA1_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SDA1 middle" evidence="2">
        <location>
            <begin position="5"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3990464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15974" checksum="1FEEC54BC7A1664F" modified="2020-12-02" version="1">MNVDDDVSSEDEWNDIQTNSEDNDDVIDETEENTPADNHSVCEENEENPELVASRISQTKIFTNEDFKKIKLTKIIQQVNPKGGKKRKREQTIDEPSEKKDLLSVDDIEQITGKKRRSNKEERIASAKVEIAFILIKNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GB68</accession>
    <name>A0A6S7GB68_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000918">
        <property type="protein sequence ID" value="CAB3985766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GB68"/>
    <dbReference type="OrthoDB" id="10011386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="28331" checksum="F9752EB669743D27" modified="2020-12-02" version="1">MAIATEIRESIEFIAHVKEKAVLRSFGVTVESDSDDAYESEESCSDAEYISETDVRETCSDSNQDSLLTTRELATGTSSESPTQAFVATILWLYRKFKGMKNEFSDDDIRQAMSSICHAYDNMCHMDSLKIAKRDFPLPKPFDECWTMISKVIDRLCLRNHVDPKCERMYNADEKVPPQFKTMACEQTFIWASRFKKVMCAMPHVRQFFFLHRLVKYRNRYTEKYHRLEKVPILPKIGKSKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDV9</accession>
    <name>A0A6S7GDV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036438</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001185">
        <property type="protein sequence ID" value="CAB3987512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDV9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="15997" checksum="438EEF75987E81F6" modified="2020-12-02" version="1" fragment="single">MIAFKCFSEDDGGVGDDGDGYDGGRRGVVMLGSCDVGDGEDDDGGVGDDDDGDGYDGGLRGVVMLGSCDVGEDDDGGVGDDDDGDGYDGGRRGVVMLGSCDVGEDDDGGVGDDDDGDGYDGGRRGVVMLGSCDVGEDDDGGVGDDDDGDGYDGGRRGVVML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIB3</accession>
    <name>A0A6S7GIB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022953</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001447">
        <property type="protein sequence ID" value="CAB3989229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIB3"/>
    <dbReference type="OrthoDB" id="6085377at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="147"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="20190" checksum="5AB4164CAD1FDB1F" modified="2020-12-02" version="1">MKLERMKLPQFSGNIRDYPRFRSDFEKQILPELESGKVAYVLKSCLEGEAFDAIYNLDDDVTKMWKRLDEKYGLPSKLVDVVVYDIKNIKHLQEGDDQSFLELINTVEKGYQDLARINMESEISNSGTVSLIEERLPRDIKREWSGEVNRSTSKVEQKSSRVFSNSFKNKERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNR0</accession>
    <name>A0A6S7GNR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ankyrin repeat domain-containing 26-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A004771</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001854">
        <property type="protein sequence ID" value="CAB3991462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="366390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050657">
        <property type="entry name" value="Ankyrin_repeat_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039497">
        <property type="entry name" value="CC144C-like_CC_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24147:SF53">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN 26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24147">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN 36-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14915">
        <property type="entry name" value="CCDC144C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
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            <begin position="1519"/>
            <end position="1911"/>
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            <dbReference type="ARBA" id="ARBA00023054"/>
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    <sequence length="1914" mass="215563" checksum="F3A800B71AB83649" modified="2020-12-02" version="1">MAGLKKFIKKHGGKKSSASKEDLRSNADSDLAFGYVIAKEKDLPKLHKAVWNRDATKVKQLCKKSDINQFDKENRTPLHLAAATGNDEITKFLLVNKAKTNLCDNDGRTALMKAIECSHNGCIELLLDHNADVKVTDINASSTLHLTAANNLIDIATLLLRKGININVSDKEGFTPLHVAASLGNQDFVLYLLNEHANVDCVDAHGRTPLMTAAADGHMDIVKMLLQHNANVALKDAQGWKAADHAVMNGIHSCAKIIDDHELRQTQENENEKVKENTKAKEQQPSKTKKKADFTEVLKSPANDDLEFTFGGPAADKVNNDALRSEGSTSRQSEGEDSWGSDTEDDVSEANKKSTKVSLAAALKKVERSESNLSHASQSRIPVRSPVISPSTNSARTAEKVTSPQLPSKIPRPVSSSPPTSGGLPSPDKPLSPRESKQSPLSPSTSVKSASTGKISPSSPGPGKSSPGVTSPQARSRVVSPSESVRSGTDMEGRLNRQQSGGSLPLEYLRATEENTDSEQGAKKKTDKTLGYSSSFLSPRSDQSNRNLADELGLSLSGSDMEDDSVMSGEVSFDDVKDGNNEPKMLTSTVKPQEKQDQGNKNPAAYLGLDLDSPVSSVSDPDISGMSDNKQKKAGTSNKKTPESYTSKKKNTEDTDSNWDSSEGFLPSDDEKESKKPSKVSVKSKHDTELKAAVEKRRTGLHESTNVESSEPGKDGGLTDDESEVSESESEWAKEREETRRKELEKIKEQGLAQMKAEEDKRKEAEQKLQEEREKEEQRKKDWEREQQEKDEQRRKDWEREQQEIEEQRQKDWEREQQEKERELAKSIKKGLEDELGIESDFNGSDEGSISEVQSESQIDDDEGSLMDNNEEQTRTTGDFTAQNKGVLKDNDDHRGVSHEQPRDLSGQNKNIEGKDILAQTGDLMGQGGTLGDAGKQGEVIGDFEEQESSQWDSSHDEDGENVQGRMGSERTLEGTDSRDRRGTEVTQVSSMDNDSRIRRDTGGSEGTFEGNDRRDRRSSTGISDEISEEVSEDPEDDLGESEGSFGSEGTYDDQDEMISKQEIADQEKIMKNNNNNNIVKEPALMKKEVPNQQSTSTLESIPSPTREQGGSPREKTGITQDNQSGSPRANLRNTESEGRLQKEEDDLLEAYKARQEEMLEQERRMEEEQARREQERLDEIRLQLERRQEEERRKMAELERQRKERELAMQKEREEYENEMKRKQVERKSAEEERKRKEIERLEEMKRREEENKARSERIQNISTRPSEDLINPTSISPEETQAERLLTEKHRGFVEDAANTAAVEIQKVQSRDRLADRTKEIKKRQLEAKADLEAVRLQTNKLNEPATLSNKWESPFLSPDLMPVSTKAEKLNPYSPQDIHSDWSTSSEDERDRPQSRAKTPLSGGETGLGSSLSPGLSISRPSLMQTAPVSGSRAVMDNSPAVVQLKSSLRESKRQLEKYQEKLTLAETKVRQLGSHSVDLQSKLEETINQKSAIERELFEINEENRSLKHECLRSTEDKKIAEALAETVKDQLRRSEEKLTKEIKLRRAVEETGKQVETERANLENAFRHIAQEQEDLKKLLEREQEQCRLKGELYREQKKQNEAIILESRKLSQHRSEVLTKLESADEDRKNVEASSESLREQLIHAKGEVGRLNSQLETLTKVSQSEVDLFKKQLAEQTEKSRRLEDSLAKVRSDYDTQMSQVQAASIEQQNKLESEMEARHGLQSEAMVLRSRLEGTENERNEANKTRADAERQLHKLRDEWYKTKTSLEKDVSSLREANQMITLKLNTAENKISSLEAELQTANIMLAERSSQMTMNMHDIDNKRASITKLESDLRTEKDKNARISARLETATDRMKDLDNEATSLRRQLDRAADKVRKQEENSQETQNKLNSTISEIKTDYEKVRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GPP1</accession>
    <name>A0A6S7GPP1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="2">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A018431</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="2"/>
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        <property type="protein sequence ID" value="CAB3993673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="30551at2759"/>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016055">
        <property type="term" value="P:Wnt signaling pathway"/>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
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        <property type="entry name" value="bZIP"/>
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        <property type="entry name" value="DIX"/>
    </dbReference>
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        <property type="entry name" value="DIX_dom_sf"/>
    </dbReference>
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        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
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        <property type="entry name" value="Helitron_like_N"/>
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    </dbReference>
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        <property type="entry name" value="PIF1"/>
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        <property type="entry name" value="DAX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="BZIP_BASIC"/>
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    </dbReference>
    <dbReference type="PROSITE" id="PS50841">
        <property type="entry name" value="DIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0879">Wnt signaling pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="131"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1980"/>
            <end position="2003"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="2089"/>
            <end position="2110"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="1743"/>
            <end position="1889"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="131"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="1982"/>
            <end position="1992"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="2092"/>
            <end position="2101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3993673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2110" mass="241304" checksum="76E9116514B435C1" modified="2020-12-02" version="1">MALIKQNDCFYLCDSHARDYMGMPCENGTAVVMKFDDISCLEQHLYSLSVELHSNLFELVPVQLIDVESENERPQRNRKRKLVLESDCKTNKEDLTKLKNYESKRKMLFREKDCDKQKRLAKANNYKREKKLVETDSQRQSRLERNRLSQRRSRLRQSLVQNEMSQQDYLTQFNNTQYGGIENQSWAKTNINKFYKSMQYNVCHCTVCHEAWPIKSTPDPPYVCSRCFRDKKNPKKMSVENSMIPSSVPEQLKNLTQIEEMLIARALPIMRVYIKPGGQRGFSGHCINLPQNVRELATSLPRYPKDLTVIIVKMKGRENTFRDVIVLKQKVNSALLWLINNNPHHSDLRINEDALNTLPENGVPANLMSIETEDDIVSDSDSPAAAGPPTDNPFEDIVYNDSTEMSSFLPVGEQQQQEIEAVRNQLSENEPMSWPSLENEPLNEYQISHLATMAFPTLFPDGKGDPTNQGLLRDVPLQERIKHLLKFAECIDGKWVSRFASHPRFSYWAFNMIQRKRILQQSGIFLKQNPGEAHLNIDELREMADSNNANLFMSKISRYVGNIAGTTAYWNRVRDELKAIITNVGAPTLFFTFSSADMHWPELHALFNAGGNENQNDNQTSGARRQNVINNPHIVDWFFTQRLESFVKHWLYDTLGAKWHWFRYEYQGRGSIHCHGTAKLNNDPGLCQLTQIALKGFLAQKVKDENDLSDTVELDQDIEAGHQAANTVCQYVDWLLSTVNPNPPDDNMWIRPEVHPCQQQHSDISEHDKQSDYVDLLNMVQRHTRCSTGYCLRKKSNESELKCRFHFPFKHCPQTKLEFENVHTSGDSEHYRAKIVTKRNDSRVNNHQQIQLQGWRANCDIQVVIDHYACVEYLTKYAAKDEPRSPVLKQAFNSIMRNIDNNTDPHRAIKKVVMKSLGERDYAAQETMHHLMSLKLHSSSFKVIPVSLNGSRRVRDISCIDEGESCTDYSLLDVYANREQYSTSPEVINMNFVQFATTYKVVKDKLTKLPENVIPRIFPTYSPNPKGPNFASYCKYQLLRYKPWKLSQNNAWGDQEPSDEIFINSWHEFLQTPYGQANVPDWFDKLQAVVQSQETEHEPAVEQEVTREEWMILSDLNTPFENSEQLPGLTHDWHGDRECYSDQQIHEMPTWIKTNKEEFTVDEQYEDVDITSFSDMQNLAYHIVQSHFDEISLKKEPLCLIINGVAGTGKSYLINAIRNLLQNKCAVTATTGKAAYNIKGVTIHSLLKLPIGSRGAKDLTGQSLCRLQQNLKDINYIIIDEYSMLGQVTFGWIDKRCKQATGCHDKVFGEKSLILTGDPGQLPPVADKPLYHAKPSNAVGEQGHQAYRMFDKVIKLTVNQRVQGMTSDQVLFRDLLLRLRKGESTLDDWKLLLTRQPSSVSNLSEFDDATRLFYSNEQVANYNHEQLTKLANPIAHINARHSSAVAKKMPSDEMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPMCVPICPITVSSQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSLKSSANLQYRLQEEDRLNQLAQATCNAVNIEAGKLRLDALRKNTTPTDSRNVDSALGNTDSGDGAKALKKRVAIGCRQWKEIVESYGIMEEDVKETRKKLITLQDLLLNQGMETEQSDDESNFTSLDGSLLQEQITILNARLDQRTSEYDELKNELNRTREECINLQGIKQGLQSRLTDQEQVMMKLKGELLKLGFSHQTTNSDKDELQKILEERDREIALLRSQLVSKEDQIDKQRKELDKALTRIADVDNVEKDLRSKIKKHEVNAGGLRSQVKELQQKLRSVDASEVKLSNRITYQDRRVALLEDKVLREQARSKLEDMDTVRQCLQRLRSSLSGQDPQHRTLDTLEETLTNIVDTGFVPFPTNDVFKASPRNNNYQNGLSSPREKDVTKSPDVTRITYQPSWSSTPSVLIMSKRLGEVTLGDFKSLLDPPGQYRYYFKALDAEFGTIREELVNDEDVIPGWEGKIMAWISDSTEDEKVNFGQNDSSASLKTKRSETDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQ85</accession>
    <name>A0A6S7GQ85_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A000100</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.49" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020002414">
        <property type="protein sequence ID" value="CAB3994198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQ85"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000100">
        <property type="entry name" value="Uncharacterized protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="38"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="139"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="994"/>
            <end position="1021"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1096"/>
            <end position="1126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="38"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="1009"/>
            <end position="1021"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="1117"/>
            <end position="1126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3994198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1126" mass="127610" checksum="685259519501B55F" modified="2020-12-02" version="1">MIVCGVADQSLRERLLRDADLTLAKAIDAGIAAEETKRHAKELEKHQQSSDIHQVYHSKERKLKESSRAPDDVIKKCKFCNGSHQRGNCPAYGKRCRTCNRKNHFAVCCSQKSVKCVTEQDKSSDDEFFIDMVKVTNTNQNLSTEGDGENTPTPKSMPTNASPNVFTVNNTKSDWSVTLGMNGTDVNFKIDTGAQCNVIPKRLLSNLSPRPKLKTANVQLSAYNGTTTPVAGKCIAQVKHRAQTIPILFMFVDSDSVPILGLNTCDKLNLIKQVYQISEEVQSHTPIQEEFSDCFGEIGCLKRTHHIELRDDVKPVIIPVRQVPFALKPKLKEELQRMVELNVIEPVEKPTEWVNALVIVSKPNGKLRICLDPRPLNKAIKRQHHRLPTTEEITSEISGARYFSKLDAASGYWQIKVDEDSSDLLTFGTPFGRFRFKRLPFGIHSASEVFQAEVASIIADLQGCANSQDDIIVWGTTKQEHDLRLRDVLTRIRVSGLKLNRSKCVFAVESLTFLGHTLSANGVKPDLSKVEAIVNMPIPESKGDLQRFLGMVNYLGKFVPNLSQTTTPLREMLKKDVHFDLRQPQLDAIQELKSLVTSPPCLKFYDPNLPTRLKPDASAYGLGALLEQNHGSDDSPQWFPIAYASRALLPYERNYAQIEKEALSIVFGTERFHEYLYGHHFTVFNDHQPLKSIFSKSITQCPPRIQRFFMKLQKYDFNLEYSPSKTMVVSDALSRAYLNNQSTEIDQPDLIHCIQFTFDNLPISDARLTEFQKETASDTTLQQLKEYTLKGWPQQRDISQTVKPYYNIRDEIVYNNGLLLKGQRIIIPSSLRSTMKAIIHQGHTGIESCKNRARMSVYWPGINAQIEDLVSNCSLCLTYRNKQQKETLIQPTVPNAPWTKVASDLFSLYGHDYVIVTDYFSKYIEIERLTDKSSATVSNGFVERAIQTVKKSLKKAHDGNKDPYLALLVLNTTPGNDNKSPAARLFGRQPRSTLPSLIQPAFPPPPPPKDTRAKTKERYDQHAKDLPDIQPGTVVRIRAKEDEKWNQLGKVVEKCAEPRSYRVLNDKGNIARRNRRHLIPCKDRFQIRNDFDYDDLEVTTRPSSPEPPNEIVTRSGRVVRKPSRYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUC2</accession>
    <name>A0A6S7GUC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083028</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002627">
        <property type="protein sequence ID" value="CAB3995245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUC2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22489" checksum="E4CADE243B78925D" modified="2020-12-02" version="1">MLWLVLREWLVVKMVMVGRETAVGCEDVVVGSETAVGCEDVVVGTEMVVGCDDVVKTGGIEGCSNDQEVIEHNARIVEVIEDIGHDNGLNLTEANITDKGTQLKKKTDTKQGQKLAYILGLTEELSDKKYLDILPVMETKISQEQSRIKQQLRQREQQHFDKTGKLLTSKTLLKDPTSKLLMDKLKYCKALVDQWKLEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVE4</accession>
    <name>A0A6S7GVE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024600</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003080">
        <property type="protein sequence ID" value="CAB3997364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVE4"/>
    <dbReference type="OrthoDB" id="5977719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40743">
        <property type="entry name" value="NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40743:SF1">
        <property type="entry name" value="POSSIBLE GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="40661" checksum="795AB1512E0CB87E" modified="2020-12-02" version="1">MVMFKRRAYLKFIFVSGAILTIYGFIWPKAVLKNRYDFPIQKDESHIHVTTNSPPINEKSSNEEQTLQKEELRIHVLTNYPLMSEKPWNEGQTETNISRLWQRQEELEETLQKNLNHTLVTAVHLLVNQPLAEQRLGEQHFHNKHKIFVHRINALPKYRDFFDYVNDRLQNQLVVMMNMDIYIGEGFEMINKTFLAEYNTSYVLTRHGRQEKRCNMGGKLGYCGVSYFGSHDAYIFMLTQPLDESVLAELDYDMNVLGAENKLIWVLRNKMKRRLLNPCKYLKTYHNHCVDIHGSVRPRIDEEIDGKDGGVEPSGLTSKGNHLNKSFYYGQNFFIVQYIIITFWIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZE4</accession>
    <name>A0A6S7GZE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001553">
        <property type="protein sequence ID" value="CAB3989800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZE4"/>
    <dbReference type="OrthoDB" id="5969298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20115" checksum="A51366AB2981ADF1" modified="2020-12-02" version="1">MDFREKTVLYNVNGMEKHLCFTRVPFGAEASPFVLGATLQQNLGNQPPEYQDTVDALKKNTYVDNLMYGGEDLSSLVKFKDESSRILESGKFPVHKWESNVESLESNDMPNPTKFLGHMWDKREETLEITVPDYPEDEPVTKRSILSHLGCIYDPLGIISPTLAEGKQIYRNVQSVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H097</accession>
    <name>A0A6S7H097_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Adhesion G- coupled receptor D1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A027810</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the G-protein coupled receptor 2 family. Adhesion G-protein coupled receptor (ADGR) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001750">
        <property type="protein sequence ID" value="CAB3990907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H097"/>
    <dbReference type="OrthoDB" id="5968745at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15040">
        <property type="entry name" value="7tmB2_Adhesion"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00037">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1070.10:FF:000058">
        <property type="entry name" value="Adhesion G protein-coupled receptor F5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.100.10">
        <property type="entry name" value="Mannose-Binding Protein A, subunit A"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001304">
        <property type="entry name" value="C-type_lectin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016186">
        <property type="entry name" value="C-type_lectin-like/link_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018378">
        <property type="entry name" value="C-type_lectin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046338">
        <property type="entry name" value="GAIN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011">
        <property type="entry name" value="ADHESION G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011:SF347">
        <property type="entry name" value="FI21270P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00059">
        <property type="entry name" value="Lectin_C"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00249">
        <property type="entry name" value="GPCRSECRETIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00034">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="C-type lectin-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00615">
        <property type="entry name" value="C_TYPE_LECTIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50041">
        <property type="entry name" value="C_TYPE_LECTIN_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3990907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1041" mass="119627" checksum="D32BA89F2FBA2E9A" modified="2020-12-02" version="1">MSIRQSCLHRLVNLMFVLLTVKHLIDMEVVGSIIRGNWIKRQTTSYFVSSSKSTWKDAKESCSSLNAHLLDISNDADVHFLKDNVTFNGQKFWIGLRKNDSTLNTQVYQNEDDVLITDGGCLTARLNKSSLWEFKTTPCNWLRKSFCLKLTDMSGNCDEGWTRYEDSHCILPVYHQISWFAAYVHCKRLNGHLLKKEDLQKLLNAYFKINIYFWIGRRNRFKVEPKANWTWYKSNVVFSDWLKWEIRVQTIGCGGCGYWSRKRIFLNADCTKYRSAICVFELLDHKYFSNATERRSSWISAKNTCDTQSSLPQFTDRDVEQVFRNFSKDFHNFSIWLGLRKNILSKNDCISIEVENDTKLTDFTLERCYSVNCLNITKRKMQTPCDELHHPLCVQRKSQLKDICTEPWQDCKNVCCLVLNNVQASWIAAHTFCLQQGGQLADAYELRTDGINFTMKPSPKRCWLPKRHVFTPRDPLEGWHWINGSPLMVTSSWGVGELRYNGKLGRCAVIVDDRKWEDEPCSHTRTYICKSKKADLDDKDEIYKEIEKFDTYIKNYLRNDNVSQKQEGDKNTEEILPLFTNLVVGLVNKSSFNASFSIKTDGFELDVFTTSVKDLVDGKINTSHPTPMVSIRKLCENRQSCKLHGNEDLVMNFTRFLSTVKGIIMEVESIRLNITSTGQASRSKVADVISLNYLVEGREVNELRGNETISLKFDRKEQSMQPQVHCIFLDGNQWSERGIENGVHNDRTAECIANHLTSFSMVVLDAELDEETMQSFSYISYIGSGLSLTALLFTLLVHIFLYNDLQVLSSSRQLVHLNLQIALGGTQIVFLAGGKQSKDEIFCKVVAILLHYFSLASFCWMLIEATMLYLKLISVFGGEYVQIKKFCAFGWGFPLAFVSISAAVKIDGYGTKEWCWLSYDSGYFWVFFAPVIIILSLNLVTVIAVVRVLCRVTSRCEDNEKQHIYAALRGIVILFPTLGLSWIFSVIAVNHDAMVWKYLFAIFNSIQGFLIFLIYGVCNGEIRTALKRRLGRDINPFSSTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H1H8</accession>
    <name>A0A6S7H1H8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001814">
        <property type="protein sequence ID" value="CAB3991257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H1H8"/>
    <dbReference type="OrthoDB" id="5985199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="23075" checksum="04158A9B281035EA" modified="2020-12-02" version="1">MTIHVSQRIDCLIECDKEPCCRSINIQKKSSPHDAQICEMLHNLVYNTSEKLLETNPSFDHVYLTSSKKDYNASCLFPRACKDPKALGLQSGKIPDSRLKASSEYPNFENHRARYARLRWDKCWVAYPSDTNQWLQIDFKYKAKITEILTQGRTDANQWVGSYTIAYSDDDVKFKTYKGDEGQDKVTAIYFSVPQLLGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8E0</accession>
    <name>A0A6S7H8E0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038396</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003837">
        <property type="protein sequence ID" value="CAB4000436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8E0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="43099" checksum="E50B40C6F869912E" modified="2020-12-02" version="1">MESPGKTSDEKSKSCDADSAKKSLNEYDANVQDIIKLQEHVIATQHKIISSGSFLGGLLSLSEKNAIKSEVNQAKQIFNLKIRENKRKDISEVVNPLLFQQLLVDIKNACPTITAVLELLVLTNNTSQNVLKTENVKMKATVHLLASMIDIRDQHGNNDFPLLFGLLCLCYGAGPSLIRMLQCLGLSESFPMLIPRLRAMQLNKKWTSCQERNLLRKMDLALNVYPETVEQIQSSSSDHLREMSDSAESKVNQRVDAKQFKINIPQIEEDFPDLATKKTKIFPLPISHENQHTKISARKSAHDSIKDVNKELDKRFNSVFGILRDIASTKAQDMETSSTSKPSNVARKLNINVGDQKNTLLVQGCANRCPDVYMDATHLNKCPPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HB13</accession>
    <name>A0A6S7HB13_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A076308</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020002225">
        <property type="protein sequence ID" value="CAB3993277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HB13"/>
    <dbReference type="OrthoDB" id="5983013at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF8">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 2" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1225" mass="141706" checksum="446E5A7EAD459D9B" modified="2020-12-02" version="1">MDTYVSNPVNKDEEWSEFITKNTKETSDNLSNDLNIENQETVETRVSNDSVDNDNDTDDEVTERLLTQRGSPHIHGLFWIKNAPEYGKDSDEDITNFVDSYVSCKADSDDLTELVNLQRHKHSKTCKKRGNAVCRFNFPLPPMPRTMILEPLSETDLEENIADILKKTLGQIRSLLDSIKADETMTFDEFLKRLDLSEQQYLKAIRLSLKHNTLLLKRSPAEIRINCYNPNLLRAWKANMDIQYVLDPYACAVYILSYITKGQRGMSKLLHKACEEAKEGNKNIVNKVRHIGNKFLNAVEISAQEAVYLVMQMPLRRSSREFQFINTSDPHERTFLLKNMDKIKELPDHSVDIESDNIIKRYQRRPKKLENLCLADFVAWFNCKSDSNQKSKLKPNSPLIDDYLTESNFDDSVDDDLSDKEQKIFENDENDEYEMKGGMTLVKRQKPRIIRSVRFNKTKDPENYCGEQIMLYTAWRNENTDLLKDFETYQDRYEIIKVVIEQNRKQYENHTEVLDQAVQDIESEENLVAPNTQYRDEQDREIGTKASELFGCFDPGKDKQHAQYDLINDIGIYPRTNDDEELVVKRLSDADFRKLVQSLNVEQKEFFYHVLNSVKTDKLPMRLFLSGGAGVGKSSVTNALYEALIRYLNSQPQNDPDDVSVVKVAPTGKAAFNIRGNTLHSAFKIPANRGFNYCTLDRDRLNTIRSQLQRMQVIFIDEISMVGSAMFNFLDLRLQQIMGTKEPFGGLSIITVGDLFQLKPVFDNWIFENSKDGYAALATNLWQKYFQMFELSEVMRQREDKEFAEILNRIREGNHTEADIEVLKERILNISPQHPDYPISLTHLFSTNMAVDQHNHDVFQKSSNEKVDIKAIDIEAKDDLTTNVSVLDGMTNGAECIIKKIDYRVEGSSRPSIIWVLFQEQHIGNDYRREYSYLYNQSIEKNWVPILEVKRQFTKNKIQVLRRQFPLRPSAAKTIHRCQGDTLNEAVVDLPSLKREHMHYVALSRLRSILGLHILNLNEKKIAVSRKVQEEMTRLRQNSVLKSHLPFLYKDTSGTFKILFQNVRSLHLHVADVASDYNVKAADINIFVETALCSNDNNELYQIPGFRLFRNDFIPHGTRTPYGTAAYVKDNIQLILEASRCNYNHVEMTLLKVNQPVNNLHVVGIYRSKSKVKISMFVDALKHLHSTYINDPNTPVIILGDFNVNLFENASDKNTLSKYLIEEKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HC57</accession>
    <name>A0A6S7HC57_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A034050</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004625">
        <property type="protein sequence ID" value="CAB4003425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HC57"/>
    <dbReference type="OrthoDB" id="10072451at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1460.10">
        <property type="entry name" value="GTF2I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004212">
        <property type="entry name" value="GTF2I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036647">
        <property type="entry name" value="GTF2I-like_rpt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46304:SF2">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR II-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46304">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02946">
        <property type="entry name" value="GTF2I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117773">
        <property type="entry name" value="GTF2I-like repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51139">
        <property type="entry name" value="GTF2I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4003425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="591" mass="65922" checksum="7329EDD99C04834B" modified="2020-12-02" version="1" fragment="single">TQVNTRQSEEEKLRRDVQDLFNDKYREATGKDTPFPYKRRNEFLVDGLPEIPFRKPSGYGVGQLRKIIQSRDNIKIRVKEAEPTGVNLAETSQGLNSCPPRPPSSLDPLTLSSSDVPPSSSSLLTCSLVPAVSSVPSLTSSNVTYSTFSSNTPSSSCGSSSFNYISPSSSATSTTTFHLSSHSTSFPSSSSLCTCSPLLESSSTISSLAYMSSTSSSSSPLTNPMFLSEPVPSVQQSIPNQLSSMHPVSSTAVAPAVASGLSEGAKRRRLRRPGQKPRELPVYPFWSKVKVRNQEQLIIAEGMIVPGFQTENAVVSTDFRRKIYVMKVLDDVEGSSLEEGTYIIRPFNLLLPEVGITPGVGGLVDLHIQRNGRKLKLDEDQEELCDANSCQAPQGHNSQAPNAELRRVQCDSPKCRKWFHLQCVGVDDAVELPRKWFCGCSKFERENIVRSDKIQYHELGSMLGVLPEVEKHLRNVVTEKVASIRHVIWTKYSRRERRFVNQHLFAGFELPLTDDLFAEFSDIVMGLFLSPDHKWTDKRSERIDYCQIVLLPEAFVKLIMVIEGINRNIAEECLFNWTDNIPTLLARFYKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HDN7</accession>
    <name>A0A6S7HDN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048773</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002330">
        <property type="protein sequence ID" value="CAB3993797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HDN7"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="48142" checksum="DED27C1F9212FEDA" modified="2020-12-02" version="1" fragment="single">MTVGRGVLQGDCLSPLLFNMCFNTFIQHIKAEKYRQFGFSFKLLNPIHWFQFADDAAVITGQESENQHLLNRFSIWCQWSDMIIRVDKCSTFGIKKAITKSVQYLPKLLISNQLIPKITIGESFQYLGRYFDFHMSNNNHKTELTTLLNELMSDIDSKPLHPKNKLLLYSRYVLSKLAWHFTVATLSKTWVTENIDSIANKYIRRWLDVPISGTLSTVFLTNNKFGLSIYPPSVKFIQCQTVLRKALKSSPNESTNDLWRATSNHTNIQYDAYNSTKEVLKDFHSGHENKLLNQLTSQGSFFCSVTEFAYLSLTNPETLLHIVAGCQFYLDRFTWRHNSVLNFLAHQLQIVDGSTLYADLNGFKSPSILTGDTYRPDLLLSCSNGSLYVVELTTGYETNLKNNVIRKKDKYRELLRQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HF47</accession>
    <name>A0A6S7HF47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A007397</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004179">
        <property type="protein sequence ID" value="CAB4001783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HF47"/>
    <dbReference type="OrthoDB" id="10057873at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003656">
        <property type="entry name" value="Znf_BED"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501:SF5">
        <property type="entry name" value="HAT C-TERMINAL DIMERISATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501">
        <property type="entry name" value="TRANSPOSASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140996">
        <property type="entry name" value="Hermes dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50808">
        <property type="entry name" value="ZF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="523"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="544"/>
            <end position="554"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4001783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="623" mass="70207" checksum="6E612A53A4199AA2" modified="2020-12-02" version="1">MADSDLHIADEVLNEGQGLEGFSTIGKKGEEEEHPWPYLKSMFRYNGRVGRENKSIKFICCLCSPLVREISAFISSPSNLRKHVQRQHPHHLKRYTELTSLKKRQKRAKESEPCTSSNPPAKQLRVYECKTNTVSQKKVDRLILNFTTEGLQPFSIVGLSAFKELVTSLSPGKTVMCRETVKNRLKICATDMKHHLCETFESVMTVATTTDCWSARGKSYIGVTAHWINADDMKRISAALACQRLKGSHTFDVLASALENIHNDYGIGNKICKTTTDNGSNFIKAFSLFGTDNVTNTNEMEVNNEDDEDELIATGDADQAEENATYKKFSRSAFAKCQALWNLSSRSVLAAEAVQSKCGIALTKPNKTRWNSVYRAVERLVRIIKEKGEESFQSLCNELKLPRFKAGEIRFLQEYYKSMQPFAQALDILQAEDKAYMGYLLPVLYMLQDKLKKKRDEMNTCSPLIDALQTGITRRFSAVMQEPEMVAAAILHPKFRKTWTNDTTVLEKGMVYIKRKLTEIESTERTTSVESAGSASDEGDDDAFFFPQKKQSSSGRSGLLQLEEYLSSQSTETSSITTWPLLKDLFIKTNTAQPASAACERLFSAAGRIFTPLIEVTYRRPEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHX8</accession>
    <name>A0A6S7HHX8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061573</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004438">
        <property type="protein sequence ID" value="CAB4002750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHX8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="13522" checksum="D25E7C1982AD67CC" modified="2020-12-02" version="1">MCGSCTPPQLSIVSTRTPQPIDVNITAPQSKVVDATAPQQSRVVNTTSSQPRYVSSTPPQPSIVSTRTPQPIDVNITAPQSKVVDATAPQQSRVVNTTSSEPRYVSYTPPHTTLNSKHHDPTTYIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMR4</accession>
    <name>A0A6S7HMR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000289</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005750">
        <property type="protein sequence ID" value="CAB4007285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMR4"/>
    <dbReference type="OrthoDB" id="5983002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031248">
        <property type="entry name" value="RNF213"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605:SF16">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605">
        <property type="entry name" value="RZ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="25957" checksum="89A80007E8E396BA" modified="2020-12-02" version="1" fragment="single">QDRSSTGHILGRAHAQPQNITSERNLTPLSCGVLRCLTHAAMLLGTEQDTPSIAAVIKPPVQDVVQFLKEHIQHDVRCIARSTGNNDDEAVQIIHLVLVNIVNNLGQQGANSNIDGNLTTKDSRRVWEDTFMTTYLNPVLSAISQLLQDSSSRIVQDERLGNNPLMRLVYELDFPNYEAIVKLDPMCPALWRCRKKITIKYLSLKFQEYSQGCDKPDRCEVLAEFLKKVCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HSQ3</accession>
    <name>A0A6S7HSQ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sphingosine-1-phosphate phosphatase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012281</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005665">
        <property type="protein sequence ID" value="CAB4006983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HSQ3"/>
    <dbReference type="OrthoDB" id="301434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042392">
        <property type="term" value="F:sphingosine-1-phosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006670">
        <property type="term" value="P:sphingosine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.144.10">
        <property type="entry name" value="Phosphatidic acid phosphatase type 2/haloperoxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000326">
        <property type="entry name" value="PAP2/HPO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036938">
        <property type="entry name" value="PAP2/HPO_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14969:SF39">
        <property type="entry name" value="PHOSPHATIDIC ACID PHOSPHATASE TYPE 2_HALOPEROXIDASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14969">
        <property type="entry name" value="SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01569">
        <property type="entry name" value="PAP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00014">
        <property type="entry name" value="acidPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48317">
        <property type="entry name" value="Acid phosphatase/Vanadium-dependent haloperoxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="428" mass="48481" checksum="059FC99A96BA1966" modified="2020-12-02" version="1">MDEEIKAFNNRQKQTRNDLKSSKLEDNGEEYIEAPIDKVGPIGRWIRHRLLSSSLYGTPLLCAIQRHRTPLWTKIMKYMSFFGTEEFYIILICFVKWIVDARLGRLLCILMGIGFFVSNFLKNCLCLPRPPCPPVIPLEEATETWGLPSHHSVLCVVLPWYIWFYSMIHFNLGYSEQSLLFTAITIWSVSVLLCRVYLGVHSPADVVSGSICGCLILAFWMKVDNYLDHYISLGNNVIMQALIYTIALLFIHPRPKLRTGSFQETVCMLGTLVGFVMARSAWTARKPALCKTVLRELSDSTSWMNVVLVSMGRLLLGFIIVLAVRSLGKVTFRSIVSNVYNLIGLKSVIRGGSKAHYFNTTYNKSFTLPPVFNLEKKSEKSIKSSNTISDDVWEVDHGAKYLTYVFVGWSGSYLAPLAFHLLGLNISS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUJ3</accession>
    <name>A0A6S7HUJ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">PREDICTED: uncharacterized protein LOC107330388 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A021422</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003003">
        <property type="protein sequence ID" value="CAB3997027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HUJ3"/>
    <dbReference type="OrthoDB" id="418245at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00033">
        <property type="entry name" value="CCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00037">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.250.10:FF:000006">
        <property type="entry name" value="neurotrypsin isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2080">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.70.10">
        <property type="entry name" value="Complement Module, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.100.10">
        <property type="entry name" value="Mannose-Binding Protein A, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001304">
        <property type="entry name" value="C-type_lectin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016186">
        <property type="entry name" value="C-type_lectin-like/link_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037221">
        <property type="entry name" value="H-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035976">
        <property type="entry name" value="Sushi/SCR/CCP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000436">
        <property type="entry name" value="Sushi_SCR_CCP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071:SF18">
        <property type="entry name" value="DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071">
        <property type="entry name" value="SRCR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00059">
        <property type="entry name" value="Lectin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00530">
        <property type="entry name" value="SRCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00084">
        <property type="entry name" value="Sushi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00032">
        <property type="entry name" value="CCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00034">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00202">
        <property type="entry name" value="SR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="C-type lectin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57535">
        <property type="entry name" value="Complement control module/SCR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50041">
        <property type="entry name" value="C_TYPE_LECTIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50923">
        <property type="entry name" value="SUSHI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="8" id="KW-0768">Sushi</keyword>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="566"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="625"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="638"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="669"/>
            <end position="679"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="700"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3997027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="700" mass="76523" checksum="9174B2334236DECA" modified="2020-12-02" version="1" fragment="single">RGRIQVKEVPEWSESHCQSVRFEPLTFYPDKVVHVQVSVSHVNQSDRVHDAAVAWVENVNVNGFSFCVMESGRNEGPPHGEATLEWMAYQGAPSEGLAGKVSIPYWWTGTKCQTVAVSAARFSTIPTVLVTAEHHRKSLKHDAASVWLEDVGRTSFKVCLRELQNFDGPHQDISVNWMAFEGLEFPVFTELGKTAFDRSTSHPLESNNYAQCRDVALTGNYPSPPTILVMPKHSSSGGNIDPQHNSIAAWVEDISTSEFKVCFKELHTSRGYDAVTVTHVVLRGICPEGQSYFNGFCYGRITSCQSWSNASRTCLNNGGTLVGIGNAEEDVFVQHLHHGRPSWIGLNDRANEGSYLWTNSQPVTYTNWENGISKPPSSASEDCAESGGRNNGYHWVVSDCADCRNFTCKSDFNECSHGKYTCAQIGGVCVNIPGSYSCRCQRGYSGNGKTCTDFDECADKSKKLKCHAKLARCVNTPGSYTCQCITGYTGSGEKCSDLNECTNSLHNCHEHADCINNVGSFSCTCKSGYTGNGLICYPDCRDPGTPPNGYRRGTSLKYKSVVHYTCARGHVISGHSSTQCKADGTWSNPVPTCHSVTNVRLVGSGYRYKGRVEIYHPSYGWGTVCDDSWGLRDANVVCRQLGYSGARAAPQGARYGQGRGPILLDDVGCNGSEAYLWSCPSSGWASHNCGHGEDASAECY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVY4</accession>
    <name>A0A6S7HVY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071968</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006054">
        <property type="protein sequence ID" value="CAB4008203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVY4"/>
    <dbReference type="OrthoDB" id="5976583at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="23022" checksum="01EE61A58ABE1790" modified="2020-12-02" version="1">MAKEFLQNVITDMGNSIFPDGSPVDSTHNVQKGYFQSCGDVVAISLAQGSPPPCFLHECVYRTMVDANTDFMSFDDNDITPAEKIHLENVVSDLHSNSLAIIEHRYMGKIDQEHNGDIRRSIVVSTVSKRQLYLSQFMKGLELYRLAEMKQNPEAFKQYLMMGQAQPVDANLVFSLMKTRYSINGSTQKEIEERVMDYFQDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVZ9</accession>
    <name>A0A6S7HVZ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006503">
        <property type="protein sequence ID" value="CAB4009586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVZ9"/>
    <dbReference type="OrthoDB" id="9987685at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12054" checksum="6EE2920BBF7B02C3" modified="2020-12-02" version="1" fragment="single">SPDKKWWDKIIQYNGANRSGEMPGYFGWLTEFVEDKSLVKTHLFTSGLLSVPLEIKSPFEGTEDTAALVAGMLDFTLYKEDVPVVQPFQGWSLMLPEHSPFRSKTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWC0</accession>
    <name>A0A6S7HWC0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006237">
        <property type="protein sequence ID" value="CAB4008819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWC0"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF29">
        <property type="entry name" value="PEPTIDASE A2 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19316" checksum="DFDB67668448D3F6" modified="2020-12-02" version="1">MANYSSNYIRDFATLTAPLRDLTKKDVRFEWTQTHQTAFEKLKNTLAIAPCMSYFDKNKQTFVTVDASPVEISGIFSQKPRNGDVDSQQIIAYASRALTDTEKRYSQTEKEALAINSVPKAMTLQEIINATNADAALTALHDAIKTNKWDSPIVKPFKAVKNELTSTTHGVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3N3</accession>
    <name>A0A6S7I3N3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007048">
        <property type="protein sequence ID" value="CAB4011153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3N3"/>
    <dbReference type="OrthoDB" id="2309723at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031889">
        <property type="entry name" value="AIMP2_LysRS-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16780">
        <property type="entry name" value="AIMP2_LysRS_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="85" mass="9795" checksum="5100E3EF0A9C543F" modified="2020-12-02" version="1" fragment="single">MAASAMYKMKPVYGSSEVVEEYPTCMYQMKNIHEDSAEDLVIDDRELLELINHQEAVLKELERLKHEVYHIGVDIGVNNQSEPTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I483</accession>
    <name>A0A6S7I483_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004023">
        <property type="protein sequence ID" value="CAB4001192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I483"/>
    <dbReference type="OrthoDB" id="5988221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="801" mass="91842" checksum="BBD8FB4A6067F888" modified="2020-12-02" version="1">MSSFSRVIRHILVGLCFWANLIYVLHIISSGKQDDGSNTDYRLLYFKIKSSLSNVNPDGNGLYWCFGQDRLLRSHLALGVKHAYCLNFDKIDSNAVLHVALLLISGDVATNPGPTQTTSADISFQSCSNQNIGQIWQGKNLSVLYANARSIVNTTDKLCLEIHSGQFDIVVLTETHLDNTIVDSEIFPPNFIVFRRDRQHLGRHGGGVLIATKNTLKVHHRDDITCIAELLFVDILLHRNKKLTIGVFYRPPNREWQPLEELNQILSEISRSDIILLGDFNISDINWNNISPQSDSLLENLLIDIVHEHFFSQLVNEPTRGSNILDLVLTTSTDHIQDVQVGEPFSDHNLITFKISCKPYENRQSRKQYYSYKKADWDSLRNLLLYAPWELSLADNNTNVCWQTWKDLFLAAVDDCIPKANVAKNKQNAPWITRELISLCRKKKAAYKKARKSGKNRDWLYYKKLNSMVKRKCNLARQSYVDDLIEELKVNNAKPFWKYVNSKRKGTNNLVLLKVADREITNDMEIAESMNTYFSSVFTDETYDNFPTVNRILNEELTDVQCTIEEVERHLKTLNVCKSSGPDNIPPQILKECASQLAPSLANLFNKSFSSGMLPQDWKLANIAPIHKKNSKCKRENYRQISLTSIISKIAEKIVRDRSVEFWLSRKVFNENQFGYLKNKSTLSQLLLCYNDWAKTRNDTKATDVVFMDFSKAFDSVPHERLLYKLEQHGIGGALLKWFRNFLTNRQQRVVVRGSYSKWTNVTSGVPQGTILGPILFLIYINDLPNEIVSHVKLFADDTKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I792</accession>
    <name>A0A6S7I792_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008380">
        <property type="protein sequence ID" value="CAB4014625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I792"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="34096" checksum="00111C0302ED8DBF" modified="2020-12-02" version="1">MKLQNTWGCFRRAILHGKIQYFYKPTDNPTLKITGNHRDNRKSVNRLGKYSYTHIKKKDTGQRTAKRIISTPIPVHGQARCAVTFSQTSVPVLWHIISGSCEPILAGKMALQHGIIDFNANPDTFHPILMIDAEDKGNFQEMLARYPQNFDGIGKLHHHKVKLHVDKEVKPVHVPPRSFPYHLKERAQKAIEDMIQQDVIEDHPRDKPAPWVTNAVDDGSLRVTMDARNVNKALYPTNHPIPRHEDIKTKLSGCRVFSKMDFEWEPESRYFTVFHANDKLYCYKRLTMGLKPSQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I7B1</accession>
    <name>A0A6S7I7B1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pericentriolar material 1 protein C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A022347</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004356">
        <property type="protein sequence ID" value="CAB4002441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2125770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034451">
        <property type="term" value="C:centriolar satellite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036064">
        <property type="term" value="C:ciliary basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034454">
        <property type="term" value="P:microtubule anchoring at centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905515">
        <property type="term" value="P:non-motile cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071539">
        <property type="term" value="P:protein localization to centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031446">
        <property type="entry name" value="PCM1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024138">
        <property type="entry name" value="Pericentriolar_Pcm1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14164:SF12">
        <property type="entry name" value="PERICENTRIOLAR MATERIAL 1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14164">
        <property type="entry name" value="PERICENTRIOLAR MATERIAL 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15717">
        <property type="entry name" value="PCM1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pericentriolar material 1 protein C-terminal" evidence="3">
        <location>
            <begin position="1128"/>
            <end position="1521"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="25"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="247"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="358"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="432"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="526"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="613"/>
            <end position="673"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="690"/>
            <end position="725"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="747"/>
            <end position="780"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="900"/>
            <end position="962"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1003"/>
            <end position="1023"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
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            <begin position="1077"/>
            <end position="1126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1284"/>
            <end position="1325"/>
        </location>
    </feature>
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        <location>
            <begin position="1457"/>
            <end position="1719"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="137"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="313"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="387"/>
            <end position="414"/>
        </location>
    </feature>
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        <location>
            <begin position="34"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="49"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="97"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="264"/>
            <end position="276"/>
        </location>
    </feature>
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            <begin position="364"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="452"/>
            <end position="461"/>
        </location>
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            <begin position="552"/>
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        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="637"/>
            <end position="669"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="690"/>
            <end position="700"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="749"/>
            <end position="759"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="770"/>
            <end position="780"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="906"/>
            <end position="938"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1011"/>
            <end position="1022"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1104"/>
            <end position="1114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1284"/>
            <end position="1295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1310"/>
            <end position="1325"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1481"/>
            <end position="1500"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1516"/>
            <end position="1542"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1543"/>
            <end position="1558"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1584"/>
            <end position="1600"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1609"/>
            <end position="1619"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF15717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4002441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1719" mass="191427" checksum="5405723B45FA20B6" modified="2020-12-02" version="1" fragment="single">LKELQDRQNALLDLQRRAENQLKEAEAEGRRISSLMTNGQAIDNGSVSDRSRSGTERSDESRSSQPGTVGGAVNLRGPSATGLRYPSREQAQPNRKPSNEQKPENFKNRRLPSEQAAWVAESTGSLTPDNEAQALATADAAQERLELESKLMDLQAKKEQMDALVEQLQQLREMQLGKEMALPQERSVNETIENGEDDVPLATRSAKDTGDNVDDEKILEALQLHRKLRKLQDVRDKLERLKELFEEQQERSEAESGAIAGVNEPHRAQPSRENRGAEFQPRGGDHDDSAILDDMPPGSIDWILNSGIDDPELLTKLRQVKAAKERVANLKQRNEQNNVVQPYGRAEAAASSAQAVAAQDEDSTVQTDNETTGSVSSSLMWQEDPEFQEKLRKLNTARKKLKKLQELVKKTEELPVGPNGRPYLPAEIVELSSSTDEDEEGEDTSTAAEGVEGGHDAANDERESEEDATSETLVQEETIHAHGEHRDFGDSELGYMDKLTQQRAALSHLLAEKQKLLETQEHLQRLRQNDAMTQTRQSDRHKPLETFIHNPTEASTSRQGATADSTTQTLVFSEPRPDKYRQPGTSTSNTLLWRELRRQRELQEQKLKKRKERLMLERKGRRSGLENASEDEGFGRSTLSADITTATWGGSTQMSSTQNDSAVSEGSSPDSDEEILVEVEDDASDGIVQAEEEEEEEGNSEVDIFPTTSTANRKHFPKSGVKQNANQKRLLFEGLRKQDLERHERFKGWQNSLFPSGNKKSGKKPQRFSNPEELHEEEQYSARERSMWERQFNVLQGQLENTTSLCNTLLRDQQTLISVLLNRGETTQPSRVGPNSFSQYQQRQQEALHGIQNYFEQQRFLVQQQQMLQNLTECYSQMQQQHEDMLHLQQSFAQLFTHPAERTPSARPSATPNAPATSLGNSRTPNSFSFQPSTSFSYRPQECERETPPPSPFTATQAKPSVERHVRAADSSTFQQRPYAAMPFPWLPGLRNRQFQFVGSTNPDTGVPSPEASTSRAYNQATGPVKPVSARVVSATNTSAGSPSLAYNPVTYSDSKASGGRNVVVGKQFPTPLRATAAAQLAEQDKSNWRGVKRRREEDKIETDSISSHQSSLPGDSEKPGTESDAQSDYSLFEALRDSIYAEVATLISQNESRPHFLIELFRELQLLGSDYLRQRALYSLRDLVTRFLKDDPPGGTIESAMGAYSWLASASEQTPSESAGFSETDQDQDKMKVPEISTQGIYDYVEAVDSGSSLSTPNSGNHEPFASEFLGETVIHLDKALKSMREREHHDSERSSATGNEGATAGVQGDTSSAGDVASESSLPDIQYPKIDTQALDRQIKKIMAEVIPCLNDHMEDTCSIELLEYIRKMVMGMIQQKNEAKEFSRFFHKQLESILQDSLAKFIGKRMKDCGEDLLVDISEILFNELAFYKLMQELDGGAKAKFFNREQKYRMENAAARNSRNQEDNPGETSQNTTAEVKDEDEVVVENENAEDQEDEGSSSSSSEWQVVDETTEDKPEDMMSREQLEQDEETLGRDRDDAMAEEFDEPRDEAEAADTESSQCIKIVELSMSESRPLARNGSDEESEVDIAGEVNEENAEGAVWNGNMNGSQDHNMLPSQMAAANGAEAAAEEEEGASGSNENKQEEDQDDDLPTKFTGLTEADLQVKIAEEQSRNDGISGIVVSMDNGDELAGDPNAIPEPEGSALVNGDAHDEPEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I8M1</accession>
    <name>A0A6S7I8M1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004768</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007855">
        <property type="protein sequence ID" value="CAB4013359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I8M1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042813">
        <property type="term" value="F:Wnt receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017147">
        <property type="term" value="F:Wnt-protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060070">
        <property type="term" value="P:canonical Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050778">
        <property type="entry name" value="Cueball_EGF_LRP_Nidogen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000033">
        <property type="entry name" value="LDLR_classB_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46513:SF13">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46513">
        <property type="entry name" value="VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00135">
        <property type="entry name" value="LY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15497" checksum="A2CA3C51B63C5DD8" modified="2020-12-02" version="1" fragment="single">MQLLFFSEIYPEPFLLSRITTAILATDLTTYDSTLILADGIGEHYPYMLDVDTVDKKVYFISSSHIYRVNFDGTGKQMVLENSYPRDIAIDWIGRRIIWSSINQNNINIAGLDSSEKRELISTWNPVYIAVEPIAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHS9</accession>
    <name>A0A6S7IHS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009464">
        <property type="protein sequence ID" value="CAB4017246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHS9"/>
    <dbReference type="OrthoDB" id="6153129at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206:SF1">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206">
        <property type="entry name" value="PROTEIN CBG10425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="24058" checksum="46A429B346E1E9B2" modified="2020-12-02" version="1">MRNDKQCEWRDMKKRNSALQLFIATHLRRSLDKVKTMTTRSIINAVKNNKLFGCVECDIHVPESLREHFKEMCLIFKNIEIRREDIGELMRSYAEENNVMYQPRRSLIGSMKGDKILLATPLLKWYLEHGLGVTRIYQVMEYTPKPCFKPFGDAVSDARRAGDADPSKAIIADTMKLVGNRYNDKDFNFVFYYYNCSSYGKTITNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQX2</accession>
    <name>A0A6S7IQX2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A039549</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010809">
        <property type="protein sequence ID" value="CAB4020157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQX2"/>
    <dbReference type="OrthoDB" id="10461112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="167"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4020157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="22776" checksum="2AB574271C811A17" modified="2020-12-02" version="1">MEPCPAHTDSLTVGVTAAAFVIVVALVCFIFILRRRRKKDSSYYARLHILLQHSRGHQQLEGNITSQEVASLSQETGTSVQYENLTADGDPVPGLSRGVVLYRDYMNTRPARNSWYDRLQLIRPLAMEWLRNAWGNVDNFGRHVYDVMQRVRHVPSPYDKLGSITQGDSSGSGMETSGSTYGTMERPAAIILPSGSENASTTENV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IR41</accession>
    <name>A0A6S7IR41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079285</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010815">
        <property type="protein sequence ID" value="CAB4020166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IR41"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="15940" checksum="71FD22DC850462E7" modified="2020-12-02" version="1" fragment="single">MVKCLSFLAGKRLTNRSARKTVVKKLDDANVPRAQIVSVTGHRNEKSLDDYVDSFSTVRSKQLSNIISGRETLTGVGDGSKVGPLQIRDRNISVVPCTSTSSMADQQRQFPVLNLANLAQNMENSTMNITVNTNMQMSQPDIKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYJ2</accession>
    <name>A0A6S7IYJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025171</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006801">
        <property type="protein sequence ID" value="CAB4010481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYJ2"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="28750" checksum="88ED2F08828A4226" modified="2020-12-02" version="1">MINDIRPVQASNLIVKFADDINLGIKVTDDSDASYMETNNIINWAEINRMKLNYKKTWEMVIRGKITRPLPAPLPMIVRKSWLKILGVTFQENPSMWDMHLVELMSKACSRMYIIRTCKYYGFSRKELDLLFHSLILSIIVFGIEVWGCASYSKYLSQVDKLLKRAYKYGYLMYQVSIVDILNNKDRDLWEKITTDPNHALQVLLPPSRQLELRNRGHEYELPRVRTERFKRVFVNRCLFNFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3B4</accession>
    <name>A0A6S7J3B4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003448</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014197">
        <property type="protein sequence ID" value="CAB4026435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3B4"/>
    <dbReference type="OrthoDB" id="5986221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47027">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47027:SF20">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN WITH RNA-DIRECTED DNA POLYMERASE DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="840" mass="95946" checksum="EA1A4EAE77E13E4A" modified="2020-12-02" version="1" fragment="single">GCNLSPTLFNVFINDIPDLFISKDCDPVYLGETKVNCLLYADDLVLLSQSESGLQESLAKLECYVKRWKLKINLKKSKVLIFGSKSQRRPYITTNWYFGGDLIECVDEYPYLGITFHYAGGFQLAHYDKRTRNIRNIDKVKAEIRKKISSGEYTVGQQIAPRKYEKMALNENGEIVRSEFVVEGRKQPLVEIRERTLKSQEKYMRQRCDDEYDKMTSESLITCLKAINEYHEDENVQSMRDRLKDIERTRHLKVWHDLSTIANHGHLVFMVSSLYDPAIHYLDSEYQNLTGCKNTDIQTKVETPEVYIVARSGSSDVEQLTYVDTRLECLEELSIDIKTSGGNDVGDKMRFFYGDSPARQLESGQQKGGNFYCSGCGANAQQAYQLDICFSCHYLSLIDRQQLVLAGPLGRKNSLAKAPKPFQKLKKDELIRELNARGIYEGESKKELEKLLTEELHGVQRVPALLYNNPTATLESINCDKYEILSFEPLHDIGKHIENVLAEFPFHLPEKEAAAVKEVINCSIGGKDTKRTFDYRCALIILAKHSSKIVTSNIVQQLLTTLVEIQRIAYSSESERTPKSVLRLHNMTWHHGILCREVFGFKLKELTTRKLYGNYYHNITSHAAMQHRLINGKACNVEEQERIFNTITNITKSTSSYHPSHIIGNIFIRLQAEKQMQAFQGSSSLNQETSVSKLADSLPPYGNTIISEDLIKKHIRSWPSHLERISDFLLPGKGSWWLEDESGNVEFLDGEKAASSHTGDIRVEDKHGQLKVIRRSLEEINITNGNINVGIEEQSVTGYLPEEFPQPDIVGFELYPDETINLPSMYPEDNDQHKDEMTVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8A4</accession>
    <name>A0A6S7J8A4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014840</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014411">
        <property type="protein sequence ID" value="CAB4026797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8A4"/>
    <dbReference type="OrthoDB" id="10267344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="32700" checksum="63018446D9AB282E" modified="2020-12-02" version="1">MDLADMQSMQKFNDGYRYLLVCIDVFSKYAWVVTLKNKTGPTLVEAFKVILTSGRKPKKIMTDQGTEFLNQHFQALMKEDIELYNTYNETKASIVERLIHTLKTKMWRYFTARKTMRYVDMLPNLMYSYNHSVHRSIKTRPTDVTVGNEKKVWHTLCDDHSVAKNVKYKFRIGDQVRISKMKRTFEKGYLPNFSKEIFTISKQIPRDPPVYKLKDLDGEELKGTFYEKELQKIIKKDDVYKIEKILKKRGRGSNVHYLVKWLGYPINLIHGYQLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9J9</accession>
    <name>A0A6S7J9J9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035752</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015682">
        <property type="protein sequence ID" value="CAB4028736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9J9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15713" checksum="1BF03B760CD31D74" modified="2020-12-02" version="1" fragment="single">MGWGLKSSSKKPRFSKKQKVYLIGKFQIGEKLQGEKSLSEEGNDEDDEDFDDLENTAMEAHIELLTKELVPQHPIMYETYNLCDTILRSQLKKFNISLLKEICDSLMIDATDILSAKRKQPYIEKIEELYTGCTCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPF3</accession>
    <name>A0A6S7JPF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">52 kDa repressor of the inhibitor of the kinase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036262</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018818">
        <property type="protein sequence ID" value="CAB4032928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPF3"/>
    <dbReference type="OrthoDB" id="5984802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="141"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="471" mass="53439" checksum="9DA4F4AA3F866AA5" modified="2020-12-02" version="1">MVKGMSSSEICNLIQNVFKPDKKYSFPKTSGRSFRYDWLELHSWLCYSPSQDGAFCLSCVLFGDRFPGKCSKIHNLFSQPLRHWSGAAYTLKHHAGQGLGGEMSQHSRTFPILTSLLSQMSGKAQPIEVILDTNLKKEIEENRKKLGSIVDSVIFCGHLGLPLRGHRDDSKYHPEVGNYSTGGVGNFVECLNFRVWAGDKVLEDHLKNCGKNKSYISKTSQNKIIKCCGQVISEQIIQDIKASKFYSIIADEAADSSHKEQMSLVLRFVDIDMNIREEFIAFLQCRWGLTGEQLAKLILEALNNLTLSIDDCRGQGYDGAGAVAGHINGLSENILRINEKAVYTHCYSHRLNLAVCDSLTVVEVNTMMKHVKEVSHFINISQTHNMPFEEIVRNYPERESQKKRLVDVCRTRWVERIAGLDTFIELFVPLYDTLKEMKDNVQGSYRPNLLTDASHFYNLVAQFEFIVAFDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPN2</accession>
    <name>A0A6S7JPN2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Hexosyltransferase</fullName>
            <ecNumber evidence="10">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A018050</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Golgi apparatus membrane</location>
            <topology evidence="1 10">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the glycosyltransferase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020018878">
        <property type="protein sequence ID" value="CAB4033008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPN2"/>
    <dbReference type="OrthoDB" id="5964716at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006493">
        <property type="term" value="P:protein O-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002659">
        <property type="entry name" value="Glyco_trans_31"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214">
        <property type="entry name" value="BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214:SF376">
        <property type="entry name" value="HEXOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01762">
        <property type="entry name" value="Galactosyl_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="8 10" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4033008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="44307" checksum="1C62F4CA4819E08A" modified="2020-12-02" version="1">MFLFKKKLFIIAIIILCQVWLLVFRTPLTTWLSAKSDNGSLNLTSCPQPEHGEKVEVACRRKPRSSKQSLNAANVAMMLKNINRTLVKFINNFRATKISENPVATTRKPTTKPSIDIFLVKSGAKGDVFRRHREAIRQTWGNRSNCEQRKALQDEKIKNLRWLLIFVVGKAGPNDDELNKVEARQHNDMLIGNITDNYINNVVKFYMGQVWASKFDIKYTLKTDDDVYVRIPRVLEYLVNAKFPRPFYGGMTFPPMRVHRVIGRKWTVSWKYFGEKNYPKYNAGAFFILSADLFNRLFNYVYIRKPFHTDDAYVGIAMRDFGVKIGRISSFVSRHDMNVFIHKAEDCKILRLDGFGHSLDPESTSFLHNRLKTLACGSMQIKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JUG3</accession>
    <name>A0A6S7JUG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020369">
        <property type="protein sequence ID" value="CAB4034728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JUG3"/>
    <dbReference type="OrthoDB" id="8928177at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="19118" checksum="22DB94D9BB49EEE5" modified="2020-12-02" version="1">MIQYNKGSHKVYTKVTKYHVNYEPKYHVNYEPKYHVNYEPKYHHVIYDPKYHVNYEPKYHVIYDPKYHVNYEPKYHVTYDPKYHVNYEPKYHVIYDPKYHVNYEPKYHVTYDPKYHVNYEPKYHVIYDPKYHVNYEPKYHVIYDPKHHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0J4</accession>
    <name>A0A6S7K0J4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytosolic Fe-s cluster assembly factor nubp1-b-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022579">
        <property type="protein sequence ID" value="CAB4036948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0J4"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="159"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="231"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="43032" checksum="A1B21146A46B8DB6" modified="2020-12-02" version="1">MAAETESLKEIIYDKLLSVRDRLMQAHADLDMNDVLEILEVLMECVVLLDSCDRVSEQILQLFSGRYERYPESIKTNCRTTHECDLTGMNRFTAIADEQLDNAVRDIKSTSPDCDSKLLAGYLRAMHINVQRSRIRESLTRVDALGIVARWCRTVHRRVYNVSRPFALWHVDGNHKLIRWRFVVHGCVNGYTRIPVFLKCSNNNKAVTVLNLFTQAVDDWGLPSRLRCDKDHGILDPGDEVDLWCLHFVFTKEINYSLSRWVEGWIRHPLRTERNCSPLQLYIRGMRWDHIAVPQPEDTNWDLYGIDWTGPVPTENEITATTVDVPDTNLPVTEELRNELNERLTEINNGNDFVEQYYVVRDCVRQMATY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K388</accession>
    <name>A0A6S7K388_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018316</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023551">
        <property type="protein sequence ID" value="CAB4037871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K388"/>
    <dbReference type="OrthoDB" id="413361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF40">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="213"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="28218" checksum="9CD1116DE1D33441" modified="2020-12-02" version="1" fragment="single">MAEITKIDKLNGKNYQSWKYNVKLVLMERGLWGFTQEGKEIPPDEDATNAVKNAFQLRSDKAYSLIALNVEKHLQIHISSTTDPLAAWTNLKKQFEFVSVTQVVRLNRKFYAATMEEGGDLMKHLTYMTSLAEQLREMEEDISSKKFATVVLGSLPESYDNLLTSLNARKAEELEWDNIKGLLIEEYLKRKEKFENNKSDNALLTNRKSYMSRGRNYDRRRHGEHSRNWTPVDYKPSWNTNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K788</accession>
    <name>A0A6S7K788_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026845">
        <property type="protein sequence ID" value="CAB4040477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K788"/>
    <dbReference type="OrthoDB" id="10065625at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27200" checksum="A6115FFE090C98A1" modified="2020-12-02" version="1" fragment="single">MCDLFYDIILMGLDTIFPQKSVKLHCRDKAWITPEIKLLISQRQKAFALGNTIEYNKLRNKVIHVVKQAKSKYFESQVNHLKNSKPRKWWSAIKNLAGFSLKPAFHSAEVNGTILQGRDLALAVNNGFLAATKSLPPLSITDKLSVEEPTVLYPISVVDVESRLKAVKSNKAPGPDTLPNWILNNFSMEISEPVKMIFNASIKQAQVPMQWKEANVVPVPKTSSVTDISSDLRPIFLTATLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9Q4</accession>
    <name>A0A6S7K9Q4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcription initiation factor TFIID subunit 9B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A073613</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013291">
        <property type="protein sequence ID" value="CAB4024893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9Q4"/>
    <dbReference type="OrthoDB" id="341924at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000124">
        <property type="term" value="C:SAGA complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005669">
        <property type="term" value="C:transcription factor TFIID complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016251">
        <property type="term" value="F:RNA polymerase II general transcription initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051123">
        <property type="term" value="P:RNA polymerase II preinitiation complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003162">
        <property type="entry name" value="TFIID-31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051431">
        <property type="entry name" value="TFIID_subunit_9"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48068">
        <property type="entry name" value="TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48068:SF4">
        <property type="entry name" value="TATA-BOX BINDING PROTEIN ASSOCIATED FACTOR 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02291">
        <property type="entry name" value="TFIID-31kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="158"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="168"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4024893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="24447" checksum="C855FEBEB0CD9C3A" modified="2020-12-02" version="1">MDNSFTSPPPRDFLMEIARQKNSTPLPLIQPRSGLRLPPDRYCLLSNNYRVKQQQKKQQQQARPVPIVPARTLPHYPISASSPGIKITQPAFNVSMSSIKSASTTGLTPTSLTVKPISSAVTVASTVQGGTSLKKPVVTITQTVQKASPNPPTIVPALSRPIGGKPITTWQQSRATTTTSTPQLAKSMTTVSALPSMDETVASSLQQQALVSALKRKRGEDDDDYDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCD3</accession>
    <name>A0A6S7KCD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010417</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027525">
        <property type="protein sequence ID" value="CAB4040951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCD3"/>
    <dbReference type="OrthoDB" id="5984493at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18498" checksum="0C9F9D148214B0F8" modified="2020-12-02" version="1" fragment="single">LEGTNLQQLFENHDLPLTEIQNKKVIQAANTKQPVVVAGTIARECPSVLSLIKLSITDELKSVCKNLCRRFGGSELYDKSYNKLQEFDFEKLWREIKVKVPFPVDIFNAVSGNNTSDEDINHGLNVKYCFLYSILMHERWHELSLLKCVNTILAIAGACTKQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEB4</accession>
    <name>A0A6S7KEB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Neuron navigator 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088270</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034125">
        <property type="protein sequence ID" value="CAB4044156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEB4"/>
    <dbReference type="OrthoDB" id="5973648at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09487">
        <property type="entry name" value="SAM_superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001660">
        <property type="entry name" value="SAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00536">
        <property type="entry name" value="SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00454">
        <property type="entry name" value="SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13561" checksum="C73B96DA2F8CF17A" modified="2020-12-02" version="1" fragment="single">AETSQQLDELRVDVNEFKDSFYSGNNSRQQIPQRSRDYDQRLHRLQKLKSFFGEEPPMVSLLLQKMGYERFIPHFKAEEIGILELPYMTEQRLQNLGIPLGPRLRILEEIQNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFM3</accession>
    <name>A0A6S7KFM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039175</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035715">
        <property type="protein sequence ID" value="CAB4044656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFM3"/>
    <dbReference type="OrthoDB" id="5954387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="75" mass="8078" checksum="7438382071035BEE" modified="2020-12-02" version="1" fragment="single">SYLHHLPQKVTPLGSTSMSMPVTSGVPQGFILGPILFLLYVNDLPDAISSSTIATFADDIKLFQCISCEADGFFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KI07</accession>
    <name>A0A6S7KI07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015032">
        <property type="protein sequence ID" value="CAB4027813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KI07"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12065" checksum="64EF4D1C8B49C777" modified="2020-12-02" version="1" fragment="single">VMENTSVPASETGAIIPSTSASQLKSMFKELLDETKKDILLQVKDNIDQIYTDFESVAIENEEVASTGEASEPGVTDKIENFVLPNIPTRKIQLILAHSIIWQWSFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMY0</accession>
    <name>A0A6S7KMY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032898">
        <property type="protein sequence ID" value="CAB4043680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMY0"/>
    <dbReference type="OrthoDB" id="5988996at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="55" mass="6441" checksum="47DB87DDC5EB1928" modified="2020-12-02" version="1" fragment="single">MKPYQLGSKVWKKATVASRLDERPYVVETANGKTYRRNRFQLKKSKENADTPEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LEJ2</accession>
    <name>A0A6S7LEJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017264">
        <property type="protein sequence ID" value="CAB4030959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LEJ2"/>
    <dbReference type="OrthoDB" id="5981538at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33244">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33244:SF3">
        <property type="entry name" value="PEPTIDASE A2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="154"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="170"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="20708" checksum="0C4319875244806F" modified="2020-12-02" version="1" fragment="single">PAQRLFNRRTKTLLPVSEKLLQPKINPQANKRIQQRQQLRKKYHDRGAKELSPLRKGEVVRLQPTRIGEKKWKRGIVVRKAGIRSYEVQCKGYTYTRNRKFIRRSRLPAEFGSDNADEEMSDMSEAEENVSVPTDNDLPQENPQPAHLERNETSTETSSTSKTRSGRLVKKPDRLGIDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LLR3</accession>
    <name>A0A6S7LLR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lissencephaly-1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024242">
        <property type="protein sequence ID" value="CAB4038462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LLR3"/>
    <dbReference type="OrthoDB" id="674604at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6462" checksum="7E1ADD35879C7023" modified="2020-12-02" version="1" fragment="single">VMELESKLAEAEKEVHFGGGNKKSRSAADWIPKPPERYTLTGHRSPVTKVLFHPTFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUH9</accession>
    <name>A0A6S7LUH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Elongator complex 3 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A075138</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037789">
        <property type="protein sequence ID" value="CAB4045142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUH9"/>
    <dbReference type="OrthoDB" id="10265243at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033588">
        <property type="term" value="C:elongator holoenzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002926">
        <property type="term" value="P:tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039661">
        <property type="entry name" value="ELP3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11135:SF0">
        <property type="entry name" value="ELONGATOR COMPLEX PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11135">
        <property type="entry name" value="HISTONE ACETYLTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4045142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="66" mass="7361" checksum="9D4C064B703849E5" modified="2020-12-02" version="1">MKNSYGSVVPVSSRDPTKFQHQGFGVLLMEEAERIARDEHGSERIAVISGKQTLLYRGGDPLKYPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVB8</accession>
    <name>A0A6S7LVB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080937</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020045521">
        <property type="protein sequence ID" value="CAB4046082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVB8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="97" mass="10586" checksum="228C71595F935AB3" modified="2020-12-02" version="1" fragment="single">SLAIVWFAKVMCELEYVEPEFRQKVAKEEGISSLIIIAIKHYASQLPIKEVKNNNAWAKPLFSDGNTTYDGAALPGAVPTPTSSFGLEFEGNNPGQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5M4</accession>
    <name>A0A7D9D5M4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070563</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000012">
        <property type="protein sequence ID" value="CAB3976751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5M4"/>
    <dbReference type="OrthoDB" id="10527011at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11744" checksum="AD3B95CA4245ED27" modified="2020-12-02" version="1">MSSKSSDSDRLSVSDDDSEFNYIPGNYSLIESEIMEASDSENGEGNKDQHTSCVDVERYSSEPMADEEWMAEYRLRQAEKEQRLASLKDRLAGKKSLSNWYTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E819</accession>
    <name>A0A7D9E819_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074865</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004279">
        <property type="protein sequence ID" value="CAB4002176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E819"/>
    <dbReference type="OrthoDB" id="5978439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18328" checksum="FD4EA5E31F55EA06" modified="2020-12-02" version="1">MVGPLIDGYLTEIGKGMFAKLGRSRNTGLMPPIKLFVPYTIFRHVCNIVVGYGGSLSLLKKNRMLVEITNSDNAGKVFSPVRCKGDNLLRKRHFDKVRENGRNIYKYSGRAAVVVTSTTPIIFDYNTKQEKLTILFYVQRYDKDDFSLDATLQALLNSNQVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBZ8</accession>
    <name>A0A7D9EBZ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ADAMTS 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A056808</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005033">
        <property type="protein sequence ID" value="CAB4004881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBZ8"/>
    <dbReference type="OrthoDB" id="10010359at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050958">
        <property type="entry name" value="Cell_Adh-Cytoskel_Orgn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080">
        <property type="entry name" value="CONTACTIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080:SF8">
        <property type="entry name" value="IG-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="826" mass="91778" checksum="8D499C1E0E016284" modified="2020-12-02" version="1">MTGMVSTCQDISNLEGNSPETTQVPVDTVSTQGLPDVGTTEAPTSTIRIETLPTTKPEVSTPLSTLQPGELPVIIRNPKITEIVPAYKKRYKTVVGSSISSPASIAITIVCQANGVPTPTIKWSRNGVVLECSTKTVTILNRGRLRIKSLSVNEIGRYECTASNILGSDSAISRIDIKVPIRYFLPIFFFNRLDEDVVITTSLKAPYGNLPVAPNGSFRCVLRPLNSGRVFINATEKDSGKRLLVNNKETVSLRTNSSLTRYWPIDITAAAPEQYYVYLYVENKFAKDIRLVTSLTNFRNTIIEASKGIALRFPTTSQAAVTITAFDSTTGQQIKINNLDSMTFIPSRQTATPKILSITAPGQPVSYWFYIEATNNHPRAVEMVTTMRTPNNTFDITPGNIFRMTVRINSPNSIIFRVYDKSNGFPVIINGKFSVRLSPTPSLQSGPQQLYIGAPPKKKLYVAYYITNNCANPINIKTNSSLHPVLPSVQPGGTIRVQLPLSATLAIRVFDALTGQLQRINGQTVVYIKPTEDENSHVRLYVPYRIAATQPPSGKRYYVAFSVRNNNAREITVRTTLAEPYQLFHVRPFDTITINVAHDSAQPVFIQAVDRTTGTPISLNGKQSITLIPQATPAVSQLYSAPNQYRPVYRVTFTLRNTGSKTVILRSKLSSPDRSFRLAPGQVYTLNRTVPNQHAMFINVRDAVTNQRAYVNGRTVFVLFPKVYLVPYKRVTRVLYPLRFSVENRYNKKIYIKTTLSKPYDVITFNPKQKITVYVNSTSTKVVEVKAYDFLQNTELLPINGQFSIQLTPGATSLIPLAVPSADYSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EC75</accession>
    <name>A0A7D9EC75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Interferon-inducible GTPase 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A084001</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class dynamin-like GTPase superfamily. IRG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004730">
        <property type="protein sequence ID" value="CAB4003801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EC75"/>
    <dbReference type="OrthoDB" id="5971534at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000541">
        <property type="entry name" value="Immunity related GTPase M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030385">
        <property type="entry name" value="G_IRG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007743">
        <property type="entry name" value="Immunity-related_GTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051515">
        <property type="entry name" value="IRG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32341">
        <property type="entry name" value="INTERFERON-INDUCIBLE GTPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32341:SF10">
        <property type="entry name" value="INTERFERON-INDUCIBLE GTPASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05049">
        <property type="entry name" value="IIGP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51716">
        <property type="entry name" value="G_IRG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4003801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="26223" checksum="C24535D9541CEC5F" modified="2020-12-02" version="1">MRNPTAKTTVRSEEYPHDRKAYNRESYDYDIGKFLKKKLGGSKEVKIRFGITGDSGTGKSAFINAMRGLNDDDDGAAKVDVIEATTNPTEYKHPDNPMITFVDLPGIGTPNYPDLPTYCRKVSLENYDRYLIFTSLRFTKYDLELAKKVKSIGKSFFLVRTKIDDAYRAESRKRTFNEKEMLEKIKRYCFENVKDFISSEKDIFLISNYDKERWDFFRLVEAIGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGK7</accession>
    <name>A0A7D9EGK7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A065457</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006155">
        <property type="protein sequence ID" value="CAB4008544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGK7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="122"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="16"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4008544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19615" checksum="E685597C2ED5C1B6" modified="2020-12-02" version="1">MRSKPDPKTSNTSLNAKEDSDDEKRKFIERKWKRLNQDMKSAIIKVETAKQNTEKLVKDELNEHKAEFSELIKSLDQLIKNQSISERDNLQIDDSGKNWTETCADMYSELKSNQESIASLISEQCQQEKARKEKEQEKLLIQEEEERKRYEAEVKLETNSTEMKSIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELR1</accession>
    <name>A0A7D9ELR1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">COP9 signalosome complex subunit 4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A035664</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CSN4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007912">
        <property type="protein sequence ID" value="CAB4013503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELR1"/>
    <dbReference type="OrthoDB" id="295656at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008180">
        <property type="term" value="C:COP9 signalosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000130">
        <property type="entry name" value="COP9 signalosome complex subunit 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041406">
        <property type="entry name" value="CSN4_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000717">
        <property type="entry name" value="PCI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054559">
        <property type="entry name" value="PSMD12-CSN4-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040134">
        <property type="entry name" value="PSMD12/CSN4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10855">
        <property type="entry name" value="26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10855:SF2">
        <property type="entry name" value="COP9 SIGNALOSOME COMPLEX SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18420">
        <property type="entry name" value="CSN4_RPN5_eIF3a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01399">
        <property type="entry name" value="PCI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22241">
        <property type="entry name" value="PSMD12-CSN4_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00088">
        <property type="entry name" value="PINT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50250">
        <property type="entry name" value="PCI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0736">Signalosome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4013503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="405" mass="45806" checksum="FA66A1654989E910" modified="2020-12-02" version="1">MAAEVRQSLASLLNSGLSPKDLTERYRRILSHIVELKNGELVEGLRSFIDAVGSESVSSVVSRQLLTDLCNHILSLETSVTKDVSLYALVKLQPRAISFEEQVATIRQHLATIYEKEQCWKEAAAVLAAIPLETGQKQYTVDYKLETYLKIAQLYLEDEDPINAEAYINRASIIQADTTNVGLQMLYKVCYARVLDYRRKFIEAAQRYLEISYRSEVDDSERMMSLEHALHCTILASAGQQRSRMLATLFKDERCQQLRACGILRKMYLDRIIRGSELQEFATLLKDHQKATMADGSSILDRAVIEHNLLSASKLYNNITFQELGALLEIPAAKAERIASQMISEGRMTGSIDQIDAVVHFETQKPLPSWDKQIQGLCIQVNDIMEKISQHEPTWLSKAVDAQMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EW03</accession>
    <name>A0A7D9EW03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase MYLIP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A001078</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009918">
        <property type="protein sequence ID" value="CAB4018242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EW03"/>
    <dbReference type="OrthoDB" id="10037309at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050784">
        <property type="entry name" value="IAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10044">
        <property type="entry name" value="INHIBITOR OF APOPTOSIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13920">
        <property type="entry name" value="zf-C3HC4_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="142"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4018242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="30184" checksum="03A61362E7C2EF7C" modified="2020-12-02" version="1">MTFQDPYEPCVLDAQINQISIHFRILYEDVSTVSYSAHNFTVVYGSGVNATTRVIFKLKSELMAVSLFRSFTEFHTFFNCNTVKKSVIDQTTRTTFGKFVTIFQPHSTIGEMYLFDILRTRRQAYTRAWSILNEQLNINKRRHQPQQDGSENTDFRPVQSPLANRRSGTNDDIVIDITKTPRGKFKTHENLNELSNEEMKRIVRDLEDSRICQVCMDEEVATAFCPCGHVVCCTECSIMCRECPICRSQITYAQRVFFSCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EX40</accession>
    <name>A0A7D9EX40_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DDE Tnp4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A050623</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009592">
        <property type="protein sequence ID" value="CAB4017543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EX40"/>
    <dbReference type="OrthoDB" id="5983025at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE Tnp4" evidence="3">
        <location>
            <begin position="142"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4017543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29408" checksum="8BE7D33659F3BBBC" modified="2020-12-02" version="1">MCSFRQAREAAILAYDSSFIDEDEFVLLYDMCHSKNPELPYQNYESFELDNIDEAECEVQFRFKKHEVPVLAGAMGVPGRFTCPQGTICDGMEALCMLLQRFRYPCRLTQWNDQLLSPRCLRRYAEAVARKGGALANCFGFIDGTVRAICRPGQMQRLVYNGHKRALALKFQALALPNGLIGNLFGPVEGRRHDSAMLVDSGLLTALEEHAFGDGQPMCVYGDPEYPLRIHLQAPYRNRPYITPHADGSLQQVNEHCSCCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F0A4</accession>
    <name>A0A7D9F0A4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021697</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010528">
        <property type="protein sequence ID" value="CAB4019566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F0A4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15541" checksum="770D27DC844F1966" modified="2020-12-02" version="1">MADKPEQIQVPVTSETKKDPRRVEAGKRLAAITYKTHQRETRKPELEYIPKTVEVTKKADESNKMSKESKMTREVYDAVLLTAGAVGISMASKKMLKEPLGTPENVKGMAKLAISVSLSSLLVSYLKEKKYLPDDPFKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCD1</accession>
    <name>A0A7D9HCD1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046311</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000251">
        <property type="protein sequence ID" value="CAB3980025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCD1"/>
    <dbReference type="OrthoDB" id="6156583at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF1">
        <property type="entry name" value="TELOMERE LENGTH REGULATION PROTEIN TEL2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="262" mass="29007" checksum="00A6C8977B8226F7" modified="2020-12-02" version="1">MKARITKDGADQESIRDKLKLCIDPLAPTSHPPNIVNIVSGQVADHKVNVQDAVAIGTKQMQEFEKSWPEGFGSTISKKVKTVADSKKHIKVGSKKVYDTSVICSRVIGIQASSWDIDIKKVLSHELAPVPTSMFLDSGAMRICKATSEFKKRLAKEASSRCNMSTVAATVLDGSAVLWVVHWPVKGVIADFVENFKGFLLKKLLDSVVYLIFDRYREYSTKSVTRDARTCEASRVYQLTQNTPLPSQKAVLTVSPNKKQHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCY8</accession>
    <name>A0A7D9HCY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032213</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000285">
        <property type="protein sequence ID" value="CAB3980385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCY8"/>
    <dbReference type="OrthoDB" id="8058550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24275" checksum="16D40C00AF3B040A" modified="2020-12-02" version="1">MDRQEVCFLVLLDLSSAFDTIDHKTIIDVLEYQFGVTDRALEWIKSYLLNRKQRVDLDNNFSQDCDVKYGVPQGDCEDNSESTLAILEDCISDVRTWLLSHKLMFKDSKTEFLVIGTPQQLLKINIESVNVGRVQIKPVDSVRNLGSWFDKHMSMSLVNKIEDLEIVIKNNNADMVCITETWLSANIAASVVDISGYTIVRKDRVMHKRGGDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HG49</accession>
    <name>A0A7D9HG49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A087122</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000674">
        <property type="protein sequence ID" value="CAB3983914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HG49"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1225"/>
            <end position="1259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1234"/>
            <end position="1243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3983914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1259" mass="145172" checksum="363554BBBA77A494" modified="2020-12-02" version="1">MSKASEKEQCAAFRYVIGQDGRDIYNTMKFTEAQTDKIDVLFAKFDEYCEPRRNTIMERYKFNTRVQRDDETADQYVTELKLLAKNCNFGSLEDELIRDRVVYGIKSERVRERLLRERELTLDKALEVSQINEQSEEQLKVLNDVQSVKAIGKHNKSGNYRSKLDANRRRDFKHNGGNKQEQVSCCGKCGKSHPAKQCPAFGKKCFKCDKKNHFAKFCKSKKIHAVDKASTDDEPLFIGAVNSIHNEENVFKTLLIEGNEIKFKIDTGSQANIIPLPTFEKMKLKQTRLERPTAKLTSYTGDYLPVVGECNLKCNNKTLKFFVVKTGQVPIIGLKASQELNLIKIIMNVNNVIGQSAETIHEKFPKVFQGLGCLKNPYHIEVDPTIIPVVSPLRSTPVALRERLRSSLDDMEEKGVVEKVDGPTEWVNSTVIIEKPNSDKLRICLDPRPLNEAIKREHFKMPTIEEITTRVAGARVFSKLDANHGYWQIPLDEESRLLTTFNTPFGRYCYKRMPFGIKSAQEVFQKRMCQSFGDLEGVETDVDDILVWGATVEEHDERLMNTLQRCEEINLTLNKEKCEFRVKEVTYIGHKLTREGVKPDEQKVKAIKQMPPPEDKKGAERLLGTVNYLAKFIPNMSTIMQPIREVMKSGVEFQWGGAQEKAFQEVKEILTKAPVLAYYDVKKPVTVTCDASKSGLGAALLQDDKPVAFASRALTDAETRYAQIEKELLAVVFAFEKFNQYTYARAVEVETDHKPLVSIVKKSLTSAPPRLQRMLLRLQRYDFTLKYRPGKEMIIADTLSRAYLTDDDVDSSKMNEELECYVHTVTSRMPVSEERLEQIKKETAIDQTMKTLFSTIRRGWPETRKQTPCEIQDYWNYRDALSEVDGILLKQDKIIIPLSMRGKMLERIHESHMGIEKSKRRARDIMFWPRMNEQIEAVVSKCQTCQEYQMSNPKEPMVQGTIPSRPWEMVATDLFQWEQNNYLVVADYYSRYIEVVKLENTTSRTVVNHMKSIFARHGIPSVVRSDNGPQYTATEYKQFAQKWNFEHQTSSPYYPKSNGLAEKAVQIVKLYLSKAKQDGKDPYLSLLEYCNTPIGNVASPAQILMSGRLRSHLPTTPNQLQPKVVDPERMKEKFEEKQRKQKRYYDRGSTELPAMQEGETVRVQVQNKWKPAVIKEKLETPRSYIIQTPNGQRFRRNRNHIIKQKYGVQISRQWEPIEDFQPDSARKVCEEQVSEPSTGQYYKTRSGRLSKPPERFQAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIE4</accession>
    <name>A0A7D9HIE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Histamine H2 receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A019280</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000388">
        <property type="protein sequence ID" value="CAB3981423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIE4"/>
    <dbReference type="OrthoDB" id="5989093at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246:SF27">
        <property type="entry name" value="ADENOSINE RECEPTOR, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246">
        <property type="entry name" value="OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 10" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3981423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="372" mass="41690" checksum="70B76BB0BF993244" modified="2020-12-02" version="1">MVMENTFEKRCRIIDPPTELSFTTASMAIVFILTNIPGNLLVILAVVLDPNKNLRTPFNWLVVNLAAADLIVGVIVQPLKVHFHIKEGLEKNHVPEEINLINMVYFISCTASVLSLTSLAIERYLAVTKPYTYRNKVTNKRIVLTIVIIWLISLSLPNIYLNVGFFTYVFIFSNTFMAVGVIIICMTYTRMMQKVSKARSLNGRYGAALSTSGEASNKPLQPQSFSAVITKVNTPNAAAQNTQLVETIALSTSAEAKSLPSQDHDQFPTTNTNISSSNVTTICSNTRQLFEEKITKMFLIVLIALLCSYGPSTVMIYFVNFCEDCSCSTLHCLEDVSVLLILMNSSINFFCYALRCRRFRNAFAKLLRINRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIS8</accession>
    <name>A0A7D9HIS8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">Phosphomevalonate kinase</fullName>
            <ecNumber evidence="3">2.7.4.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A071447</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway; isopentenyl diphosphate from (R)-mevalonate: step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.2" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020000622">
        <property type="protein sequence ID" value="CAB3983515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIS8"/>
    <dbReference type="OrthoDB" id="2401875at2759"/>
    <dbReference type="UniPathway" id="UPA00057">
        <property type="reaction ID" value="UER00099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004631">
        <property type="term" value="F:phosphomevalonate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006695">
        <property type="term" value="P:cholesterol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019287">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, mevalonate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001026">
        <property type="entry name" value="Phosphomevalonate kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005919">
        <property type="entry name" value="Pmev_kin_anim"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01223">
        <property type="entry name" value="Pmev_kin_anim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13101">
        <property type="entry name" value="PHOSPHOMEVALONATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13101:SF1">
        <property type="entry name" value="PHOSPHOMEVALONATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04275">
        <property type="entry name" value="P-mevalo_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036639">
        <property type="entry name" value="PMK_anim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0152">Cholesterol biosynthesis</keyword>
    <keyword evidence="6" id="KW-0153">Cholesterol metabolism</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 18" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="14" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0752">Steroid biosynthesis</keyword>
    <keyword evidence="16" id="KW-0753">Steroid metabolism</keyword>
    <keyword evidence="13" id="KW-0756">Sterol biosynthesis</keyword>
    <keyword evidence="15" id="KW-1207">Sterol metabolism</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00034549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB3983515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21563" checksum="F27716E77747909A" modified="2020-12-02" version="1">MAAGPTVVLLFSGKRKSGKDYVVTKLAEVLGDMNCEVLRLSGPLKKQYAVEHNLDFEKLLDSSCYKEQFRSSMISWGEAKRREDPDFFCKLATKEASRPIWIISDVRRKTDLSYFTARYKTTHVRVTASEETRATRGWSFVSGVDDAESECGMDNESFDIVVDNDGDTEILQKTLEKLKQIAQTKLNKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HL18</accession>
    <name>A0A7D9HL18_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Non-lysosomal glucosylceramidase</fullName>
            <shortName evidence="1">NLGase</shortName>
            <ecNumber evidence="1">3.2.1.45</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A008300</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a beta-D-glucosyl-(1&lt;-&gt;1')-N-acylsphing-4-enine + H2O = an N-acylsphing-4-enine + D-glucose</text>
            <dbReference type="Rhea" id="RHEA:13269"/>
            <dbReference type="ChEBI" id="CHEBI:4167"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:22801"/>
            <dbReference type="ChEBI" id="CHEBI:52639"/>
            <dbReference type="EC" id="3.2.1.45"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the non-lysosomal glucosylceramidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.45" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020001211">
        <property type="protein sequence ID" value="CAB3987657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HL18"/>
    <dbReference type="OrthoDB" id="730489at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004348">
        <property type="term" value="F:glucosylceramidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006680">
        <property type="term" value="P:glucosylceramide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.50.10.10:FF:000006">
        <property type="entry name" value="Non-lysosomal glucosylceramidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014551">
        <property type="entry name" value="B_Glucosidase_GBA2-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006775">
        <property type="entry name" value="GH116_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024462">
        <property type="entry name" value="GH116_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052566">
        <property type="entry name" value="Non-lysos_glucosylceramidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12654">
        <property type="entry name" value="BILE ACID BETA-GLUCOSIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12654:SF0">
        <property type="entry name" value="NON-LYSOSOMAL GLUCOSYLCERAMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04685">
        <property type="entry name" value="DUF608"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12215">
        <property type="entry name" value="Glyco_hydr_116N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028944">
        <property type="entry name" value="Beta_gluc_GBA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="Six-hairpin glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="939"/>
            <end position="980"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="942"/>
            <end position="962"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR028944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3987657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="980" mass="112078" checksum="B0FF4D536849574D" modified="2020-12-02" version="1">MAEDDIRLEDSLPEYGWRVKLDHTFPQKPRPSKLPRWRQLPKLVGLGYRFMKYATKEKKEGRVPFIDPYKMNPCRQVYGVPLGGIGCGSIGRGWKGDFNRWQLTPGMYSYDDVHADQFVVCIRRKGKTVYQQVLSPQCTSNGLLYGHNLKSWNWGFNGANAIYHALYPRAWTVYEIPSQRIRLICRQISPVFPNDYKDTSLPVAVFVWTVQNYGKEDADVSIMFSFQSGEGKLNDVSYGHYNEPFTCKGIQSEVENGRTEGSKSHTVTCDVTGVLLHRNIDPACTYVIAAKAKHQGKNQLVRVTWKTVFNAKSPGRRLWQDLHEDGMLSSNPDPSHRSNPGEAPAAAVVASTTVPAGERRCLEFSLAWDMPIVYFGSKKMKHYRWYTKFFGYHGNAGSTLVSHALRTYPEWEEKIEEWQQPILRDKNLPAWYKSGIFNELYFVADGGTIWLDVAKEESRNTEVKYLPEIVRNYGRFAYLEGHEYRMYNTYDVHFYASFALIMLWPMLQLSLQYDIADYVNKSDFKQRLTMMSGRSCPRKVQGVVPHDIGDPDDEPWTNINAYTIHDTSEWKDLNLKFVLQLYRDYVFTQDIQFLDDLWPVAKTVMAKAVSQDSDGDGLIDNSGFADQTYDAWIVSGPSAYCGGLWLAALRTMSEIAKVLSYPEDIKKYNNILQRGKKAYERKLWNGRYYNYECSKRRYHNSIMADQMAGQWYLKACEIGQHPNDRVFPKAHVISALTTVFEYNVLRFHNGRLGAVNGMRPDGKVDTSSVQAEEVWTGITYAVAASMIQEGLVEEGFRTACGVYRSCYERFGMAFQTPEAYTGNGRYRSLGYMRPLSIWAIQWAWEKRSKKKYGTGSSSPDSSPCANEFYLLNGYSEQEEYNNVFIWEDRSLNVSPSETPVRKLSAEDLTSPLDEDYYVDAYSDFEDFSTMAVRAKSDGELNRSLTLSSGSSRRSRAQMSASGEISENGETSNLFHDSLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HSF9</accession>
    <name>A0A7D9HSF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002060">
        <property type="protein sequence ID" value="CAB3992475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HSF9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="59"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="23007" checksum="241D82FC88D28B14" modified="2020-12-02" version="1" fragment="single">LVDVEEFEEAEKWIQVCTSEYVAFTMRYHDYIKKIDEDKSKQNVSDSVVGESSEENNEESNGSQGSNNLIEQSTVSNENNHASTMQNPEMIQHSPSSAKPFTVKHEKAKLPVFTVDVRQYFIFKSDFKHAVEAQYSERDTLTDLRSCLSSEPAKLIEGISSDLNAARKFLDQNYGERPQDMDNTHVISLIERKMSEEGVGALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HX15</accession>
    <name>A0A7D9HX15_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A046654</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002557">
        <property type="protein sequence ID" value="CAB3994876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HX15"/>
    <dbReference type="OrthoDB" id="10065749at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032016">
        <property type="entry name" value="MKRN2OS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053921">
        <property type="entry name" value="MKRN2OS-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053922">
        <property type="entry name" value="MKRN2OS-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33963">
        <property type="entry name" value="MKRN2 OPPOSITE STRAND PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33963:SF2">
        <property type="entry name" value="MKRN2 OPPOSITE STRAND PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16044">
        <property type="entry name" value="DUF4796_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22795">
        <property type="entry name" value="DUF4796_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MKRN2 opposite strand protein-like N-terminal" evidence="2">
        <location>
            <begin position="9"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="MKRN2 opposite strand protein-like C-terminal" evidence="1">
        <location>
            <begin position="44"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3994876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24402" checksum="F170BCCB78F97A7B" modified="2020-12-02" version="1">MGDEAAIRCMRHCSNDYNIFFVNFPEFCPICKGQIKGSFLVLPPFCVPRPFVSSFQAPYSIVVKPTEGCFLKTYRSGHDLHIGLTSSKGLVYNYDESGVHMDNHLTWPVCIAVDILDILKGYSASVILKDWDKTLCEHSNKSEWTYDKYGPTLHNCYDFVLSFLKDILPGCQGFVGKDSFCNTHIIPRTTKAAQYIDLYRKVVDNGLFVSKANSPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HYR3</accession>
    <name>A0A7D9HYR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Inversin-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A084501</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002792">
        <property type="protein sequence ID" value="CAB3996076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HYR3"/>
    <dbReference type="OrthoDB" id="20872at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24198">
        <property type="entry name" value="ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24198:SF165">
        <property type="entry name" value="ANKYRIN REPEAT-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13637">
        <property type="entry name" value="Ank_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3996076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="530" mass="59381" checksum="D0EA59A4217BB607" modified="2020-12-02" version="1">MASPTLNIGELQDVELNTFHTGTDLHTAAVNGDKLTIEKILKQDGDIDTLNKGDKYGRTALVYTVSGDWYECAEILVAHGASLLQTDCDKRNVLHWAAYLDRPKFIKLFLEHLGSNLEFNFGDKDGRTAFHYAAALPNSKCLRLLLKRSTLNKRNLNTTDNEKMTALHWSVFYNRLENFKILLREGAETTKRDGKGRCLLHMAVLNPSADSVRIVRILLKHNRHFSIQFDCEKHTSLHLAVASGNQELVRELCLAEESALNCLDHLSRGVLHYAVLNNDIEIIDILISAGVSPHHVDSTGASVLHYAAKNNNAQIVKRFLERFKNFEDTSDNQGRTALMWAASEGSYDVLNLMLKNLSHFNIHASDEQGMTALHVACFAGHEECVKKLIANSADITQPDKLGQTALFKACAQGHHKIIGILMDRKGSHGNTMGPYLSSIQEESVVSQDTLKNSEWSHEPTEYLINGAECKKDERENLVSIDKGAFPGNCTSDSLKPEKKNRPLMKYRINEKHPRVICLTVHPKDCQVFMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I5B4</accession>
    <name>A0A7D9I5B4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017253</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003906">
        <property type="protein sequence ID" value="CAB4000726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I5B4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7267" checksum="2262818E9F2B20D6" modified="2020-12-02" version="1" fragment="single">MPTRPAKPIDSSLLKGDHKPSGKFSEDTPMIAYLHNQSPIKRAKKTIYPWQDYTPKTTPLKSVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I5H0</accession>
    <name>A0A7D9I5H0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029666</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004065">
        <property type="protein sequence ID" value="CAB4001360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I5H0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="172"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="199"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="208"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="33336" checksum="71DBB6CFB6F6FF91" modified="2020-12-02" version="1">MSTFTITSFNDSTLSRGKVVYSTVSTVKCTDGRRNLVISVFFWFRHTVSKYPKEDKMNKCIKGKQFWCEECIHDQGTCVACPQNLRSCYNEDIANQKRCVDSCRKAKPKPTKKAPTSIVPTTPTSSAFSPSGLFPTPSILVGYRSALHPGEAKKDEPRLAGNNGDHHINVGLIVAVSVLSVFAVLTCIVVSLVLLSRRNRERSRRNRNRDETEGGAEERIDLNVTYEIEENSPANDGGMDLQPNDEEQRFQANGVEEGQASQETQPAVYATPPCSIRVFGTQETEEDNCSSCLHLNEVHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I621</accession>
    <name>A0A7D9I621_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transcriptional enhancer factor TEF-1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A003590</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003095">
        <property type="protein sequence ID" value="CAB3997428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I621"/>
    <dbReference type="OrthoDB" id="10006572at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048568">
        <property type="term" value="P:embryonic organ development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035329">
        <property type="term" value="P:hippo signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.70.50.80:FF:000001">
        <property type="entry name" value="Transcriptional enhancer factor TEF-1, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.20.40">
        <property type="entry name" value="TEA/ATTS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000818">
        <property type="entry name" value="TEA/ATTS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038096">
        <property type="entry name" value="TEA/ATTS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050937">
        <property type="entry name" value="TEC1_TEAD_TF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016361">
        <property type="entry name" value="TEF_metazoa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041086">
        <property type="entry name" value="YBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11834:SF0">
        <property type="entry name" value="PROTEIN SCALLOPED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11834">
        <property type="entry name" value="TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01285">
        <property type="entry name" value="TEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17725">
        <property type="entry name" value="YBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002603">
        <property type="entry name" value="TEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00065">
        <property type="entry name" value="TEADOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00426">
        <property type="entry name" value="TEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00554">
        <property type="entry name" value="TEA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51088">
        <property type="entry name" value="TEA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="133"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="133"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="158"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="199"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR002603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3997428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="447" mass="50280" checksum="22F8A8DC03F4A3B2" modified="2020-12-02" version="1">MNSDALDMSNSEDKAKSPEDMASDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKAREIQSKLKDQAARDKALQTMASMSSAQIVSASVLHNKNAPPSNNYNDHYSSPHPGHPLPALPSTQYWNSQVSQPGSTPTSFGGLPTTHTRTLFGGSPGPSSALVPSNTVSSPNEEMRSAYPSGNQLTMSGSSNWSSRNMPLRLIDFQAFVEQTGIKADSYHKHLFVHLGPNVNFQDSILEAVDIRQIYDKFPEKKGGLRELYEKGPQSVFFLVKFWADLNTNVKDENGSFYGVSSTYESSENMTITCSTKVCSFGKQVVEKVETEYAHFENGRFVYRIHRSPMCEYMINFIHKLKQLPEKYMMNSVLENFTILQTVTNRDTQDTLLCLSYVFEVSTSEHGAQHHLYRLVKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQC2</accession>
    <name>A0A7D9IQC2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Osteoclast-stimulating factor 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A083360</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Induces bone resorption, acting probably through a signaling cascade which results in the secretion of factor(s) enhancing osteoclast formation and activity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007036">
        <property type="protein sequence ID" value="CAB4011129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQC2"/>
    <dbReference type="OrthoDB" id="207120at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11772">
        <property type="entry name" value="SH3_OSTF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.40:FF:000072">
        <property type="entry name" value="Unconventional Myosin IB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.40">
        <property type="entry name" value="SH3 Domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036028">
        <property type="entry name" value="SH3-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001452">
        <property type="entry name" value="SH3_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24155">
        <property type="entry name" value="OSTEOCLAST-STIMULATING FACTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24155:SF10">
        <property type="entry name" value="OSTEOCLAST-STIMULATING FACTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00018">
        <property type="entry name" value="SH3_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00452">
        <property type="entry name" value="SH3DOMAIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01887">
        <property type="entry name" value="SPECTRNALPHA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00326">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50044">
        <property type="entry name" value="SH3-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50002">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0728">SH3 domain</keyword>
    <feature type="domain" description="SH3" evidence="8">
        <location>
            <begin position="16"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00037432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00040640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4011129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="23350" checksum="269FEB097DCD097B" modified="2020-12-02" version="1">MSAPRRAAPPPPSRPGQVQVVRALYRYEAQQKDELAFEEGDVLYIIDKSQGEWWQARVRNKVGLIPSNYVEAHTEAVENPLHEAAKRGNVTFLNECLGNKVSVNGLDKAGCTPLHWAAQGGHTECVSILLQQNRIEINSQNKLGDTPLHSAAWKGHADIVQMLLDKGGDTKIKNNAKRTPFELAKDPECGRLLRGAIASDANDDYGDENDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ITG4</accession>
    <name>A0A7D9ITG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Fibrillin-2-like isoform X48</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A083973</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007645">
        <property type="protein sequence ID" value="CAB4012822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ITG4"/>
    <dbReference type="OrthoDB" id="1100386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039:SF28">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039">
        <property type="entry name" value="FIBRILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 7" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="537"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4012822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="537" mass="60002" checksum="3C5F424B83926BEA" modified="2020-12-02" version="1" fragment="single">MSYLFSYLVIVTASNLSIVLYDLGESSSVRVISYDGGSGQSLYVFEDGNIYWVIYDPSNNRFIILRTSKAGVTSSLGIWYIGEIRVVVDRLYIYVLDKDNNRIDIYSKRTLMKLAELAVPSGVCELILPIDIDECCSSSTCHMDATCLDTPGSFVCTCNEGFEQSGDDCVDINECDRGYCDPNADCVNSQGSFYCTCRSGFVGNELNCTETCEDEMLFYSTSSRIISNSSVSIPTADNNILGYDKYSRRLLYYDDTENLYSVALNGLNSTVLINKANIAEFAYDGERGVLYYQNSVTLKINSVNISSGEDAPVQALNSLSGIKGMEMDTKNRYLVIAKSSEPPIVRVDITSFEMQEINFDGSAQALSVDQDNEVVYWINFVVSTEKRNLTRSSYTGETVPLNIYYDGEIDLAQDYMHLYVLDKENNRIEKYNKRTWVKINVFNINDGPQRLIVAFDYDECCVGTYCPEMLSTCSNTPSSFECMCIEGYFLNGTICQDIIDCDDEHPPCHVNATCNDIPGSYECNCSEGLTGNGTYCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IU06</accession>
    <name>A0A7D9IU06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017408</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007801">
        <property type="protein sequence ID" value="CAB4013207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IU06"/>
    <dbReference type="OrthoDB" id="5981098at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13228" checksum="C24CF0984E7D78B3" modified="2020-12-02" version="1" fragment="single">MDVLAVLPTGYGKSIIYQILLKVISELRYNHIGDRKTVTVIVVSPLEQIRKQQVARGIKSASLEDVKASDDTMLCEFEVVFGSAEQWLSDKWVKNLKYGYLNETEVLVADEVHTIQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZE7</accession>
    <name>A0A7D9IZE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A066414</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009604">
        <property type="protein sequence ID" value="CAB4017566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZE7"/>
    <dbReference type="OrthoDB" id="1927454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052845">
        <property type="entry name" value="Axonemal_dynein_LC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019347">
        <property type="entry name" value="Axonemal_dynein_light_chain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23052">
        <property type="entry name" value="AXONEMAL DYNEIN LIGHT CHAIN DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23052:SF1">
        <property type="entry name" value="AXONEMAL DYNEIN LIGHT CHAIN DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10211">
        <property type="entry name" value="Ax_dynein_light"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="99"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="169"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="508"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="11"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="169"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="659"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="659" mass="74984" checksum="29026DA0E2F3181E" modified="2020-12-02" version="1" fragment="single">MSVAVSESWAEGSNLNLSEPPCNRSSPKTSPAEANKQKFKSSTATPCALSYLEGGSSHSKNVLPAIKGRNEDFYMEGDMTKSGVQKDFIPLDILTSLTQIPSPPSKEQLGPPGKFKKTEKPSIRKRPANVWNYNKGRDKLKHLVENPPCLCGAGRDISFLYDALADKNEKKGDKTKQKTEEVPGTAIKNSQLQPAKDAPSATPDASQIPNTLVPAEYHLVKDPGVLGLEFSDDLHTTHLKEHGEHLTIFPSMKPTGRQEVLKLKHAFEAMLSRAGIDDESKELSGPTQIHNLLEIVKKEQNMYNIVFNELIRQCTVECVERGELLANLRKRYAQLLDRIPRQVMSLHQEVLAQRALDRRLTEELIRFKANVSALTSELDAVKAHDHEVTKQAIQVQQELNEALMESEKNANLLEEYHELYELQRKRLEIFVRTLTEERDLWGSASYILALKVTDHHKLNVAKRLHLHERAWSKLARHFSLSLSQKDSEQLQDVVTNFQSWKDLAEKFNNQLMKNESNLKKNLEVAVQQLQRWRSEFERVVSPDQGRVQAPGRELIEELLSDMKAWEDMCNKEAEKFVGGNLLSCQDQLYHLYKRVEAWTDDAHKVFRRHQQDGQNVRYNEEMSAINQNVEKLHQQFQVRASGENGVAKGLIDMSNPIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J9D0</accession>
    <name>A0A7D9J9D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046256</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013338">
        <property type="protein sequence ID" value="CAB4024977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J9D0"/>
    <dbReference type="OrthoDB" id="5989635at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="46663" checksum="6B1BAB0159F5524A" modified="2020-12-02" version="1">MNKDIQIDGYKLASRLDRVRDTWGGVAMLVKEHIPFDERIDLRNDNLEAIWIEITYPNSSPILVATIFRPPKSPVLWYEHFIDMCENAYCEEKEVIIMSDINIDFLKPNSIPKQWVDIIESYNLTQLIKVPTRVTNSSKTCIDHIYFTNPEHVRATKVATISISDHFPVCYSRSRNSVTRIHKHSSIKYRSYKNFNQSAFLEDLTLVPWNVFESFDDPNDALDCWEKLFLEVVEKHPPLKKRRVKKPKQPEWLTEEMLKAMNTRDKFAQLNDDRNRKLWRNKANNLVRNGKTTYYRQLIENNIGNSKKLWNLIRDLAPEESKTTPTTLKDGGVTLFNQQDICDSFNEFFAQIGNAIAACLPNSRNDTSDVLADFINKHIEVNSTFNIPKVSIDFVREELN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JG33</accession>
    <name>A0A7D9JG33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079861</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015583">
        <property type="protein sequence ID" value="CAB4028587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JG33"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9591" checksum="D3B4F17BF2CC81A8" modified="2020-12-02" version="1" fragment="single">MANANSYPNPGYEVMANDTNPGGLRASSPRKLKYRSSRVFAVLGKVFQQSHWAGKFEPVRTANAHSLTNQNCRKSSSHSEIQVGILQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHT0</accession>
    <name>A0A7D9JHT0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039757</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016572">
        <property type="protein sequence ID" value="CAB4030026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHT0"/>
    <dbReference type="OrthoDB" id="5987048at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33480">
        <property type="entry name" value="SET DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19511" checksum="D5711E14933A33C7" modified="2020-12-02" version="1" fragment="single">MVEVVGKRSKKVPVLLTPDVKAAIITLTRTCKEGNVNNANPFVFALNNGQSVNPLRGNDALRKVSSMVDLQLPDAITSTNLQKYVATISQLVDMDKNEMEWLVNHLGHNVNIHKNFYRMQSSTLEMAVIGNLLIAVDKGRAHNFRGKNLRDITLQHFDDIAPEDSDSEDDGQQDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KHX9</accession>
    <name>A0A7D9KHX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030487">
        <property type="protein sequence ID" value="CAB4042618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KHX9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="61" mass="6929" checksum="2D592E1E1573B9F7" modified="2020-12-02" version="1" fragment="single">MWMSGPSWLNNSDSWPEQIVAKPSDVSESESRTIKTVMKAAVQRKSDVFDDLLAKTTLWKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXE1</accession>
    <name>A0A7D9KXE1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A028476</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011394">
        <property type="protein sequence ID" value="CAB4021357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXE1"/>
    <dbReference type="OrthoDB" id="7872928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="252"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="461"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="473"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="668"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4021357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="668" mass="76085" checksum="09295DFD1F25A5F3" modified="2020-12-02" version="1" fragment="single">FIVAHDYFDVPLSSNIHFLEEGTVFPPSQLSLLVEEFLSQINSCQGSSDWLNELRLKHAISLLHHRNLEAMAAAVQLSLRGRSITRLKITKCILLNNSAKLTLKGVLQTNWSTNKSLYSNDLKESKLSTSHDFFLDAHFLIGGRGVARPSFLDISTRNQRNWKSHLENRRRGSDLDLIAVTETWLKPHILDCEILPGLDFSIHRRDRKDKTGGGVMLAVKNSIQTLRRKDLEGDAEIVLCELRPEARRKILAVVFYRPPNSNLDHLKELKKSLRHASQFNFDQIIICGDFNLPDIDWSTGIASSSESLHNYFTKFVKDNYLWQLVNFPTRNNNILDLILTNIPDKIHNLHGYDDIISTDHKLIGFDLDLRVPKKPDIKRSVYNFKRADWSSLNNSLQNTSWDQCFVPNDVDASLSNWCAVFLTVVNQHVPKSKTRNIHDHPWIDKELLSLIKRKNMQRLKANRSETLSRKTRNGSVFSPAQATTTTSNLPFSSDTALSNIQLTENEVFKALDGLDPSKACGPAGIPGKVLKMTANIIAPSLCYIYNLSLSQGVVPACWKLANVSPVFKKDDPTLASNYRPISLLSIISKTFERSWFLKGYIYDLSKAFDRVQHHMLLYKLEQYGISGSLLQWFRSYLSDRYQRVALDGNLSDWLPYTLTTCQNTPSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KYA7</accession>
    <name>A0A7D9KYA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A076116</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011419">
        <property type="protein sequence ID" value="CAB4021411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KYA7"/>
    <dbReference type="OrthoDB" id="301415at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04515">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4021411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="390" mass="43881" checksum="37233832CAD144C8" modified="2020-12-02" version="1">MAEKWRKFKEYMKKKTRLSGKSQKGKDVSKREITVQMLSADVSGKAQKYSRIGPKEFVQLYDDDDEDLDRLYTREEMTIERVKDACLKHFQPKVGKNVVCDILAGEQRPSCASLKQIPNMNLIYVRFINKSSTADLPVFVDDTDPDHLQSTTVKRKGPNSVPSPKKAKISTPMPKSLSVTHMLKLGKLINKSTTTIRLYGFNLADMSWSSSPRAVEFSVSEDVLGEGAFRKAYKAESKHESFAGSWVVKEYNENALDVIAEINQTLETHTKKVVQMQSLVQNFASQLKTSVEQNSMQESFGDCFHYGSVYLGKKGDEFVTVEEFVDGEFSKYINNDGTLCKNVNEVILQKAECLSHFSFEKSNNQVMVLDIQGCGYSLVDPEVTSSSGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L577</accession>
    <name>A0A7D9L577_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005248</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013591">
        <property type="protein sequence ID" value="CAB4025415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L577"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="95"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="114"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="26932" checksum="A888D8A857F178B5" modified="2020-12-02" version="1" fragment="single">MDDLAQTPKSSKSDTDTQSKKRKRQLEKLDESQLEESHIDEPANFVIASTEMESLRETNRRLKNKIISLKTSAKGNKSKMKLMRRRVLQLEQRLEEQSVKKSAEESEMEGGNIESEDEASEAENEFYEHDPAYEVDDVDMEEDDEDFIEEDIGLLQHNGNLRSEPKHIVFLSQLLLLFNFCHSCKADNPLVEAKAVGTAAVVTSTCHNPNCPQKTTTWYSQPLTPGRTKARAGNFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L809</accession>
    <name>A0A7D9L809_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031279</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014919">
        <property type="protein sequence ID" value="CAB4027628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L809"/>
    <dbReference type="OrthoDB" id="120976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027962">
        <property type="entry name" value="ERICH3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23034">
        <property type="entry name" value="GLUTAMATE-RICH PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23034:SF2">
        <property type="entry name" value="GLUTAMATE-RICH PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15333" checksum="62EBD435D3991863" modified="2020-12-02" version="1">MSHAEPGPLASYNSLQDPHLGGFFANTRMKKHLKKSGLVTKSGKIVSEKTYRLQMAKKEHKDHVRDLLATAIVHKALDMENDSNLSTFTGNIEKDRYKTRPGMVCEYFWYRCQVGRARIRGIRSQYEQSIKRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LDH8</accession>
    <name>A0A7D9LDH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015723">
        <property type="protein sequence ID" value="CAB4028784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LDH8"/>
    <dbReference type="OrthoDB" id="10440471at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12057" checksum="FECDC79011D4B80C" modified="2020-12-02" version="1" fragment="single">DANNPDENGGDDDDKYVPSVQTSKRTSQSLLTVEEDRLFIRTFSKLIHSTKTIAMKTVAETIQKDPKLSHLLKTMTHHQLADRVRSEQKAIVRADQRKGLQKKAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJD2</accession>
    <name>A0A7D9LJD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carnitine O-palmitoyltransferase 1, muscle isoform isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019248">
        <property type="protein sequence ID" value="CAB4033440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJD2"/>
    <dbReference type="OrthoDB" id="240216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004095">
        <property type="term" value="F:carnitine O-palmitoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009437">
        <property type="term" value="P:carnitine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.70">
        <property type="entry name" value="Choline/Carnitine o-acyltransferase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000542">
        <property type="entry name" value="Carn_acyl_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039551">
        <property type="entry name" value="Cho/carn_acyl_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042231">
        <property type="entry name" value="Cho/carn_acyl_trans_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22589">
        <property type="entry name" value="CARNITINE O-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22589:SF31">
        <property type="entry name" value="CARNITINE O-PALMITOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00755">
        <property type="entry name" value="Carn_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52777">
        <property type="entry name" value="CoA-dependent acyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16800" checksum="31EED0D35E1750B3" modified="2020-12-02" version="1" fragment="single">MLSTLIFCRKTWAETREEVFHNGVNHTSLKTIENSAFVLVLSDQEHAYDENDATKYNDLAKYALHGEGDNIWFDKSFNIIVFKNGKFGVNVEHAWADAPIMSQFFEWVIDCETNKLGYDENGRCLGEAEYSLNTPERLQWKIPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LN42</accession>
    <name>A0A7D9LN42_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022218">
        <property type="protein sequence ID" value="CAB4036602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LN42"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="43410" checksum="F2B15E472407789B" modified="2020-12-02" version="1">MKITFELPTECVSRYLKECVEKHDWQSLELFLLGGGGHGSYAKGEGGIATGNCDLKEISLCDVMKSDPKPNMYYELISVLIDHGALVNGRNEQHIPLALAVNYNDHDLAVVLLKKNANSQGLLRSKSGKRGDTPIHTAFRIGLSLVQTEKNKYAEATSEPCAMISRSKAVPHDWSKCLFCKNRTHKKEKVMQSVFTLAACNTIMQCAEAKGDQDMLRVLMGVGNDLVAAEAKYHKTCFASYVSKSNLKSQVFKEDERKEFVYGQAFREMAFEIRTGLESGMAYDMVSLLKKYAELLEERGVDGQKYTSQKLKLRMRSHFGETIVFHQPYQRSRPGLVYSSSISLQILSMLLLPTTKNNRHHKHVETKPTPKILLLNFLCTKRRSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQY5</accession>
    <name>A0A7D9LQY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022663</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022878">
        <property type="protein sequence ID" value="CAB4037243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQY5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="152"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="192"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="167"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4037243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33607" checksum="C5407414208CFCD2" modified="2020-12-02" version="1">MSKTSGTISAEETKQLENNENRVSQGVEQISGGEIQELNVLSPEHGINMGEEISELYKVRDIPTNKLSQLASEVCCLLMGKCVNTSWRNAVLIMDKHTIVWKEFVGVHERLIQVLNSETEKRMACAEYGQQQNRKLELDAKLKEWRKSKEAEHLDEIESKKSHKASKSGSSCGNSASTKLSRQSKRKEKMALAQLKLQELKVLQEYEREEQELNRKRDLYVAEMEAKQATVSYQIVMEQDSNSCDLNVPMGVSVAKQQLNKGAASSMRVSDPMVNDKLENSCVAFDENAPVEQIKVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LW21</accession>
    <name>A0A7D9LW21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC100889228</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015188</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026020">
        <property type="protein sequence ID" value="CAB4039896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LW21"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="11047" checksum="E307E3A6E6813624" modified="2020-12-02" version="1" fragment="single">NDKQFEDKEMWPVEVQETFQAPAKISATSKWRNPSYQDLQAIFKADFKHIVETRYGKRDAITILRASLQGKPLDMIKGIDQDYETAWEYLDSVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FBU9</accession>
    <name>A0A6S7FBU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A012296</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000008">
        <property type="protein sequence ID" value="CAB3976694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FBU9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="337"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="390"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="217"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="217"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3976694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="413" mass="48409" checksum="D92F869B44726084" modified="2020-12-02" version="1">MERVSTILDEYSSEYSDIWEGLEDEDIDRLDRLYPSYREMEPEVMDSEIEILRSQAMGTEDPNENRDIRMEIEYVSRLKRIKVRKRSETEVYLDATYGTLKEEVKTLVVLKRIAKAEFKRTNYSERIDRLKEIIKNLGFDPNEPEKELEVEEEERRKEEAAKKEEEDRRKAAELERKRLAEAAEIERKKNAEAEIKRRLECLKDDKEKTEYWRKKLEEWEKEKSKPEEPKKSQPEKPKKSQPEEPKKPRGKEPKKPEFKEPKKVDIGEKSEEPAGPDTEWVDNTYNFESLLFQVAEDSIPEDDQPIFSGDSTETMVKDVREDLTRYERFKSWVEDNFGVVIAGIIISVAALLTTVIIQTRKLSSKAANFSNKGSSSDSQPRPLPNVANKLIKFISSNLWKIAIVVGIALYFYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FM70</accession>
    <name>A0A6S7FM70_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000130">
        <property type="protein sequence ID" value="CAB3978647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FM70"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="28418" checksum="DB8503895A2773F3" modified="2020-12-02" version="1">MLALKLLSVVLTYCLLVVDYSLPLEPELPPNKILTKRIQVIEDSVPVCIYIARYREKYLKRRIVYSSCHPGSYNPSIITNQEAHMIYGNMEGTGSSKEPKERQTTAKKKAKTISDYFSAVPGGNERTIYYDPAQACVSQSVAQITRTPTRTSDVYQGYQAASSPQVSPERHRVPTVVSSTLSKVHEPQAVIHVDPCKKTNISSYMNPHQPKNFEFPKRKFSGQNRSFLGCTMMNSLTRSFVFIALSKTLRET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FTT8</accession>
    <name>A0A6S7FTT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021832</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000207">
        <property type="protein sequence ID" value="CAB3979549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FTT8"/>
    <dbReference type="OrthoDB" id="10065089at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46954">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46954:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="387" mass="43513" checksum="0147BA0B1C83698C" modified="2020-12-02" version="1">MDEIEPEIRKKLCGKEEGIRGRPRKPNSTGTAEDELLKTITAIAITGSASDDRRRTEMIRTVKTLDDLTDELQKRGYQLSRSAVYLRLLPRKSLSIEGKRHVKTAPVRLIRAQNTQHRNHPDTKFARSSIQSLEEIASLLGPEEVTFHSQDDKARVPIGLTAANKQSPMMMHMQYRVQLSDHDFVVAKSHKLIPSVIAAMKVKENCIGEQGVTYSGPTYVGIRSAKHTSSSAYAYLKDMNRVCELSEFKESLFTSDGISKPIMMVTVDGGPDENPRYKKTIKCSISYFLQHDLDAFYLATNAPGRSAFNRVERRMAPLSHDLAGVVLPHDTYGTHLSARNETVDKELEVKNFAKAGETLAEIWGKTVIDGYDILLLSTFLRNMKRPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G146</accession>
    <name>A0A6S7G146_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001779</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001033">
        <property type="protein sequence ID" value="CAB3986554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G146"/>
    <dbReference type="OrthoDB" id="10440970at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101898">
        <property type="entry name" value="NHL repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="315" mass="36140" checksum="398F1A3E3799181D" modified="2020-12-02" version="1">MLINRVLFQYVSKFSTKYSTVLAWPTIKLDDRSFNPILNWREISTRKSMGEELTQLPKVKGLILEQEIDSDLPDYSAVNSHGDIIVGEDPGNIKIINQTGENKVGKVVEQCISCISVDKNNNVYVVRWVRTSTEKGYVKSSVLTVLDENYNVKQDSRRLEFLGTSNNVKIAINKNNNIIMMNFLDSQVYVLDNTGELKHKFQPGLRYPRSMDISGQDEIMVTFYYDQVVKIYSEEGNLKSIIKLPEGHVVLGLAFHYVICKIIVLTYLEKKYSYFLLYYTEAGELESTTFFGKRIRGEYTPCIYSNPSEVVLLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJ81</accession>
    <name>A0A6S7GJ81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055328</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001532">
        <property type="protein sequence ID" value="CAB3989672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJ81"/>
    <dbReference type="OrthoDB" id="8964826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="402" mass="47149" checksum="2FD7558A6EB56D53" modified="2020-12-02" version="1">MFSEETWLRDSIPDGPIEIRDYLLFRRDREIRAHGGVCIYVKESIESKMLSEFHNDEHEVLWLLLRPRRLPRGFSNIIVACLYHPPDADNTTMSEYLKSTLEMVETQFSNSAIILAGDFNKLSFKTAARCYELKPAINFPTRGSNTLDQIYTNMQNYYQPPTKNPPFGLSDHITITVFPKVRERSKLQRKTIRIRPKKRSTIASLGRFFMKIPWTDLLFKAQSSDEKLNIFTEIIRYGLDTIMPERSIKVHETDKPWMNANLKQLIKRRQKAFSSGDVFLYKLLRNKVNRERKRCRMIYYKNKVQDLQHTKPRDWWREVKQFCGTSKAARRDIRSILRTNTESSDQDLANEIMKAFVSVMDNYTPLSEDVCVLTDHDEPIVVDEESIAKKTSADQYIKSGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GK14</accession>
    <name>A0A6S7GK14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cadherin EGF LAG seven-pass G-type receptor 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A029390</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000847">
        <property type="protein sequence ID" value="CAB3985241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5959886at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15039">
        <property type="entry name" value="7tmB3_Methuselah-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.410.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036024">
        <property type="entry name" value="Somatomedin_B-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001212">
        <property type="entry name" value="Somatomedin_B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01033">
        <property type="entry name" value="Somatomedin_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00201">
        <property type="entry name" value="SO"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90188">
        <property type="entry name" value="Somatomedin B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00524">
        <property type="entry name" value="SMB_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50958">
        <property type="entry name" value="SMB_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5044005971" evidence="8">
        <location>
            <begin position="26"/>
            <end position="1606"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1312"/>
            <end position="1337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1349"/>
            <end position="1368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1388"/>
            <end position="1406"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1427"/>
            <end position="1451"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1471"/>
            <end position="1498"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1518"/>
            <end position="1541"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1547"/>
            <end position="1570"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="72"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1583"/>
            <end position="1606"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="87"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="98"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="112"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="136"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="156"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="183"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1596"/>
            <end position="1606"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3985241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1606" mass="183546" checksum="129EF52A2B20A370" modified="2020-12-02" version="1">MQSSKSFANILLFVVCVSVVKFSSTSRVDVENNTRWLKNSSVEEIGEKQYHETNKKAKFRGFEETEPLNLERGKEGLHSNPVHVAPKQHDIGEGIESKGTNNPFSKTSEPNNPERQKQKISTSKRDAKQTSLQSDILDRKLSAKDEVDRPYESSNPRKRMNKKMPSIHRVAKRNVNTSEPTQPIATPTSNPPASSSSSCNIPPVCSGQQSCRDRCTGDITKWRTDENLACYCDTACYEVFNDCCSDFAKFCGVQNPRNISIKKYKWTCEPLGNVPSNPPHCEIGEGLWMVSRCADDWPHNEVRNKCENPTKSLRQSSNIRRYIPAVSGNFTFRNYFCAKCNHIAGNLDYFPVEIKTNVIPPEHYNFSRKVNFLLSNGAEFPEDGPARPKSSQTRRYCRKSMVDSFPTSESSESNTVSESCENGPLALMLGFASCDDPNQLYTCFPSLFLLTCRLTPPQKFLLKLDYKDTYNEEHSVFTVLSTFCGSNGLTYDDKLQECAENLPSPDGKEDKFRILAWFAPSKNFQFTENDFKTVMKQYFGVKDSQMSNTSIETVPRLDSSPDSIILYHLVSFTLLLSPEQSIDVLFKSNSNLSGVSLGRFIHFKEPLSVSLNNITYSIIKTTARPLSCITRKIITPQNYKVFADGKRIYIINMTIDKAFYEKSKYFGEIDRNITICERRTPVDCKTTSTGLTKNDFVINTDLSLYHKETEKFYQLGQYNVLDKTVRLCISNKTDFPTAPTCSRKHSCKGRCSKHTEWRTDNQVFCSCDPDCYESFHDCCTDYTKYCGAQKPTETLTKKYYYTCKNLERLSCWLNADLDVWMVTRCRPKWPYDTFRTKCTRPAFDFMISSSEIYGYLPVVGRDNITFRNMYCAICNGVTKFETWLLHVETAVIPPNNFNFTEKIRFLQLSHEAKISQTARPRTNQAKRLCPSFLQYKDVIDSCPLGENFESCTNGDVAIISTYDKGHFKNMHCAACHGVPSERFLCFLSAQSRSCKGMGNSILFPSSFFLVLGYSQEIGTEIKTAYVNHIQCRESEMIFDDILEVCRVNWLSPPEQNAQERFYVYAWLKPPQNSRTNQSLAPTEFQGSLAKYLNVSHLQIFDINIADISRSIAPWRGPNKLLFYLVSSTIALTPQQSLELLSINRSDSTTSFETKLLKYLYFSESFTLHIKGIRYIVIKTTSRPLACVGQTTYTPEEYTLQHQERVFVPSTNKTYEKFEYYRENPEKLDVKRGNITVCEKYIPAKCNRSLVHYTTEEYIVMINLSIYINKTTSLYNYGEYEILSNQSIAICQEFKERVIHETRSPQTIRDNEVLGYITFISFLLSILFLIFLLVTYILFPQLQTLPGKNLMNFAASLLLFQIFWLPSGSTKIRSNKPTCMAMPMAIMEHYFLMSSFVSMSVIAFHTCKVFARSSRVPKIPQNHERKLFCVYLALVWLLPGIFVAICVVLDNQNVVKLGYGESEICWLTENNAYVYFVTIPIAVLLLFNIIAFVITAVYLRKHSQNTAAKQASGNRRSNLSIYAKLSTLMGFTWLFGLLALVVTSTTVFWYFFVIFTSLQGVFVAMAFVVNAKTFGLYKQRYASGSNTPEVDPKRRNASTNICQDTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GR50</accession>
    <name>A0A6S7GR50_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002476">
        <property type="protein sequence ID" value="CAB3994488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GR50"/>
    <dbReference type="OrthoDB" id="5977502at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="28465" checksum="5C5B50F00FEA6542" modified="2020-12-02" version="1">MATQFYLTLPSNSSLAYFPNNTVANFRVKLAETIVLPGQWEVALTEMHYPHTWSTLRRGVQQTFLYKTGSSPYQTVVLKETRYSSIDQLTKTLNAGMSKETQTKVKFSYNRSSRKVLIDVKHGTTVWFTGELATVLGFDQDTLIEKKTSSPYAADINGGFSSMYVYTDIVDTQFVGDVKVPLLRIVNIEGEYGNTVHASFRNLQYVPVKVNSFETIEVNIKNDQNENVSFEFGKSIATLHFRQKRSQYFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GS73</accession>
    <name>A0A6S7GS73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Macrophage mannose receptor 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008717</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002140">
        <property type="protein sequence ID" value="CAB3992869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GS73"/>
    <dbReference type="OrthoDB" id="5858677at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032991">
        <property type="term" value="C:protein-containing complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015721">
        <property type="term" value="P:bile acid and bile salt transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052678">
        <property type="entry name" value="OST-beta_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035992">
        <property type="entry name" value="Ricin_B-like_lectins"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000772">
        <property type="entry name" value="Ricin_B_lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36129:SF1">
        <property type="entry name" value="ORGANIC SOLUTE TRANSPORTER SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36129">
        <property type="entry name" value="ORGANIC SOLUTE TRANSPORTER SUBUNIT BETA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24562">
        <property type="entry name" value="CysR_MRC2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00458">
        <property type="entry name" value="RICIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50370">
        <property type="entry name" value="Ricin B-like lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50231">
        <property type="entry name" value="RICIN_B_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="196" mass="22019" checksum="2C36A204E7518867" modified="2020-12-02" version="1">MNRAKSAKLLVQHGAPAGVHDNVGNSGLSLLIEKLPDVAIEALDQFHSVSTINRKEYFFLNYLATAAKEFLMHSAAHGKCISIGNEMITAHTCNPMTDNQKWRWTQYNQLQSIFNQTCLGAPESPANFNRVKLSACDPNNKFQVWVCVDDFVRLNGTILNLNYGNVNDIVVLYEGTGRWSEWKVFGEDLLVCDKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H1M0</accession>
    <name>A0A6S7H1M0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002876">
        <property type="protein sequence ID" value="CAB3996479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H1M0"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="684" mass="78112" checksum="F42F88604946D772" modified="2020-12-02" version="1">MNLAQIPWHENFSIDDVNEKLSSFNGHFLSILEKHAPVKSMKIRYRRWPFMSREIKELMKNRDKLHKLARRTKMTTDWENYRVCRRAVKKALREPARKYVQNEIHKNLKRSSMWKVIRNCLPRKESTELKHSRNITELVEEFNSFFTPVGIKASESATALLTKYNLPTIDLPVPARPVSCSDVQQIIMSFSSNKAPGLDKVPMSIIKDASPYILPELTDIINCSLLTSKYPTLWKMAEVVPLLKDGDHEIADNNRPVSLLIAVSKICERVVLNQLTDYMSQRKRYTEHQSGNRKLHSTETLNVFITDQILQSMDRKEVAALVLIDLSKAFDSIDHSILLVKLQTIGVSKSVLAWFKSYLSGRSQIVRIGSTLSETCIITRGVPQGSILGPALFNIYINDLPNVPKESFLESYVDDSKIYLAFPIQDIETAAFKLTQDMERITAWCCINSLLVNPKKTKLLLLGTSQMLKKHSGTDFHITVLGEKIIPLQTVKDLGMTLDLSLTYDKHIVDTKSKCITELCRINRVKHIFDKHTLSFIINALVFSKMYYCSSVWSNTSKKNISKLQSVQKIAARVITGVRKYDHVTPILQQLAWLPDECMLKLRDAVMTLKCMKGLAPPYLCDKFEMRSKTHSVNTRNKDKLDIPLYNSASAEGHGRSLRFINAQCLFGMSSQIILKTLLWTGLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2L5</accession>
    <name>A0A6S7H2L5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nitrate/nitrite sensing protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A067745</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001743">
        <property type="protein sequence ID" value="CAB3990880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2L5"/>
    <dbReference type="OrthoDB" id="10367697at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013587">
        <property type="entry name" value="Nitrate/nitrite_sensing"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08376">
        <property type="entry name" value="NIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="330"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="Nitrate/nitrite sensing protein" evidence="3">
        <location>
            <begin position="77"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3990880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="420" mass="48768" checksum="A015B5D883ABBCDD" modified="2020-12-02" version="1">MTSIADNYQASAPPEHPKKVISTRNKRSQIIKIFMIVLVTAISMVFTIVDVVVTAQNLKQKHELKHNIAHGIKVSSIIHNLQNERSQTSMFLVSKEWNTSTNSLKLQKVRKSTDESIHDLKNWRYTLPGARCETISDSDSFLDEIRHFRSKTDSGDGLMVHELIRIFSSWTHELISWLAHYTVTQDIQNHADDLFAYHMILNTKEELELEKTFGAMYFLHGEEFTFQNVTMYNEKRVRAQAFLDTGLLFSSVVKNNYYSLKKEMNASVWLKDIESKRQYIASNSFTNSSKDNAMDWFDLMTKYGDLMLRLEVNDANRIESHVDDVIRSNVLWLIIRSLLVCFAVIAVPFIIISLVRIQNDFYKYAHSLHHKVGLEQSRTEFLMRENARHVDDLASRWKQFSQTNSEGQLSIHSVQPQIQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H3U7</accession>
    <name>A0A6S7H3U7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rho GTPase-activating 44-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A012253</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003469">
        <property type="protein sequence ID" value="CAB3998919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H3U7"/>
    <dbReference type="OrthoDB" id="19923at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032956">
        <property type="term" value="P:regulation of actin cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035020">
        <property type="term" value="P:regulation of Rac protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.555.10:FF:000001">
        <property type="entry name" value="Rho GTPase activating protein 44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1270.60:FF:000053">
        <property type="entry name" value="SH3 domain-binding protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.60">
        <property type="entry name" value="Arfaptin homology (AH) domain/BAR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.555.10">
        <property type="entry name" value="Rho GTPase activation protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027267">
        <property type="entry name" value="AH/BAR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004148">
        <property type="entry name" value="BAR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047165">
        <property type="entry name" value="RHG17/44/SH3BP1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008936">
        <property type="entry name" value="Rho_GTPase_activation_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000198">
        <property type="entry name" value="RhoGAP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14130">
        <property type="entry name" value="3BP-1 RELATED RHOGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14130:SF14">
        <property type="entry name" value="RHO GTPASE-ACTIVATING PROTEIN 92B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03114">
        <property type="entry name" value="BAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00620">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00721">
        <property type="entry name" value="BAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00324">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103657">
        <property type="entry name" value="BAR/IMD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48350">
        <property type="entry name" value="GTPase activation domain, GAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51021">
        <property type="entry name" value="BAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50238">
        <property type="entry name" value="RHOGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0343">GTPase activation</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="452"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="534"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="22"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="454"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="478"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3998919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="558" mass="63218" checksum="1A5DD11273F30E4E" modified="2020-12-02" version="1">MRKQFYRVKQLADQRVGRAEKTAILNEDLQDVEKKVEKIRQVCQTTSKKLNACMQSTGPDVDKRLKKLPHSALAQSMEEVAVVIGEESILGNMARICGNSQTEIAKDIAEYEMEVERNIIAPFQTVVENDIPSINQNKKKLAKIGLDMDTLRSRYHAALKAKESGNPKDYAAAEAKTEQLKTHYEDEMMKFEAAKDLFITEMLTLVSKEREYAEHIRKFAIAQLEFHQRAAEHLEEIMPLLDKEMGIVRSHSSTFGCPLEKHLESTKREIALVIEECVRFIFQHGMDTEGLFRIAGQATKVRKLKASFDAGLADLSGEEYDVHAVTGALKQYLRELPEPLMTFELHHEWIEAGSIRERDDRLQKLWTVVSQLPKANKDNLRYLIKFLAKIEQNSEIGKMNAHNLAIVMAPNLIWSIDDESGQMNMKNTGVLTGILEALIEHADWFFSEDVDFSSPKSPTLTTNRTDTSSSNEEKHSFKNNTSFRRQLSSSDESTKRPTLLNEAATLVDVKPVVEDDNEMSHSDEKVDELLASLMSVSDEDPKPPLLPKRSFSPPGVNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H404</accession>
    <name>A0A6S7H404_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ankyrin repeat domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027772</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003830">
        <property type="protein sequence ID" value="CAB4000405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H404"/>
    <dbReference type="OrthoDB" id="21416at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="88" mass="9807" checksum="2706DAFF010966A5" modified="2020-12-02" version="1">MEVMSENVTNLTLKEQFHVGIVTGQLDIVEDILDTSPSLVHYIDENGTTPLILCAANGHVDVLKYLIKRGANVEQRRKVIRFCSGIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HL40</accession>
    <name>A0A6S7HL40_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposable element Tcb1 transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029473</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004932">
        <property type="protein sequence ID" value="CAB4004547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HL40"/>
    <dbReference type="OrthoDB" id="2417635at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tc1-like transposase DDE" evidence="1">
        <location>
            <begin position="13"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15596" checksum="DC3F010EE0BFF367" modified="2020-12-02" version="1">MDGPFFAQFIKEHFRIAFARAGPKQKGRRLFIMDNDPCQTSKVAMKALEDVEAEMHAIPPCSPDLNPIENMFHLVKNDLQRQAICENITAESFSEFEKRILNTLDKTSVDVIDRTIDSMFGRINAVIKSKGFRIKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUX1</accession>
    <name>A0A6S7HUX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A050714</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDV3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003024">
        <property type="protein sequence ID" value="CAB3997107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HUX1"/>
    <dbReference type="OrthoDB" id="6288097at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026806">
        <property type="entry name" value="CDV3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16284">
        <property type="entry name" value="PROTEIN CDV3 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16284:SF13">
        <property type="entry name" value="PROTEIN CDV3 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15359">
        <property type="entry name" value="CDV3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="36"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="48"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="108"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3997107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13082" checksum="91C33B18AFB45E76" modified="2020-12-02" version="1">MMDKLEENDDDKADNSDEDGEDSAEKKDKSSGVWHVVSQPSVPVAPVEEVKEEPKKEVVKGAYVPPSRRNATPSQADGRDQSWKYRTGRERDPRRPPEISSEIAFPTLQASTASDKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXF1</accession>
    <name>A0A6S7HXF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077479</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003506">
        <property type="protein sequence ID" value="CAB3999062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXF1"/>
    <dbReference type="OrthoDB" id="6134459at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="289" mass="34339" checksum="A856928435CF79A7" modified="2020-12-02" version="1">MGRGFSFRLLYRVVFFSFCLIFTCFYHGGGSEYDRRKAKTEPKKLKDEFKGKALNVDVSLEQDERVSNLTENDKQIDRRKARKKTDLPKMVRKGTAMKTLRSQRMEKNPVLPFSTSPPSELNVPRKESTTIFHSNETEWQNDGSKNISSLENQTFHENHLREITKRETFASLTTQHLRNKREIDVILESPTECANFTFTIKYEDNYRVWNNFSMMYQSRMYSYNEYRVMDDGPQVCNSSDPFIKQRWRDLIAREKEVLASKHCNVSMDGFQYPNYMHIIQKFYCFLQSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3G7</accession>
    <name>A0A6S7I3G7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007697">
        <property type="protein sequence ID" value="CAB4012964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3G7"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24258" checksum="ABB8B51A3E03D916" modified="2020-12-02" version="1">MLGQVTFGWIDKSCKQATGYNDKVFGGKSLILTGDPGQLPPVADKPLYHARPTNAVGEQGMTSEQVQFRDLLLRLRKVNSTVDDWKLLLTRQPLNVTNLCDFEDSTRLFYSNEQVANYNHEQLTKLEHPVAHINARHSSAFAKKISSDDMSGLEPVVFLAKGARVMLTMNLSNLTNINYKYEFGLCNGATGTVVDIIYQNNHEPSTTWLTCCSNSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3N5</accession>
    <name>A0A6S7I3N5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">G- coupled receptor GRL101-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A016855</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003983">
        <property type="protein sequence ID" value="CAB4001012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3N5"/>
    <dbReference type="OrthoDB" id="5984578at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008528">
        <property type="term" value="F:G protein-coupled peptide receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007189">
        <property type="term" value="P:adenylate cyclase-activating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009755">
        <property type="term" value="P:hormone-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd15137">
        <property type="entry name" value="7tmA_Relaxin_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1070.10:FF:000393">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24372:SF77">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24372">
        <property type="entry name" value="GLYCOPROTEIN HORMONE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="10" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1011"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4001012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1011" mass="114043" checksum="907F7C41C9E96266" modified="2020-12-02" version="1" fragment="single">QKLAEICIKKLALSCGEFRRESISETSTYYGLRINECKINAPTLNLYLDNNELIDIGNSVFDNLSVLKTLRCVLFYGLRGPRDRACTNQSAWIRCSIYPVCLSSETFRGNQTGLFIRAHAAVTNCKNRLTGGSNERRGDDVLDILIARRNGHFLRFKVTFVLLENSNLELSILYLELPFWKMGGPRMNPAICPYILMLFTWLGAISSCARLSGVAGITTKDISKAPYFVISFHRGGILDGIKTGSYGWACIVIHILERLLIEVFLHCTFFRILKNNKLGDVRASWLKDKKNLKILDVGDNNIREIEPGAFRDLENLVQLDISNNQLQSIPENLFQHLVSLRSVKVDHFTLCCYAKQSNPSVTCISKVDNGFSSCDELLKNTVLKYSIWILGIMAFAGNLIVIIWRSIAKDANRINSFLLTNLAVADFLMGVYMLIIAYKDTLWDGVYFKHDVAWRASDLCIFAGVISTVSSEVSVLTLTVITLDRLICIVFVFRFQRWTMKKVSAIMCVVWILGFGISLAPLFYDDYFHDYENNVHFFGRSAVCLPLQLSSDRPSGWQYSVFVFLVLNAVSFLFILLAYVVMYHTIVKSARAVRSTRMNQDSTLAKRMMFIILTDFACWFPVIIISILALTGNLYDPTKQVYAWIAVFVLPINSSINPLLYTFSTPYVRGKIPTARQVLSRMRKRNRDEATHTQFSSIGSHDDNLNAIASPMKIPQSLRKQEKINEGYTTDANVAECSFAESATTAMEYRIRLVENVVMLNDGNVTMKSYAVVKVGGEETPCLVNVYNGENEGSWRDTENILSWLSLDGGHENILPFLWSAKGDKVLVEKQDSSNTMLELKANDCLICYELPSKQTLDGFLKMNNHEITEEIVYYILNDLIEAIDYLSSKQIAHHAILPENIILVESSQLALEGIVLGGLHAAKLLTSSPEEKESNNGLSEENLEELEVNVISFGNVIKILLDVCPTLEKFSDLHDLMVSCLSHDSKPTTSYLVKQLVLMDKNYRPSDTIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I8B2</accession>
    <name>A0A6S7I8B2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">L-ascorbate oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A006422</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multicopper oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004347">
        <property type="protein sequence ID" value="CAB4002412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I8B2"/>
    <dbReference type="OrthoDB" id="2121828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF394">
        <property type="entry name" value="FI03373P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0186">Copper</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="7">
        <location>
            <begin position="65"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="5">
        <location>
            <begin position="225"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="6">
        <location>
            <begin position="448"/>
            <end position="613"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4002412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="651" mass="73245" checksum="B0B3CFB226CD4A56" modified="2020-12-02" version="1">MWLLLLLTAPFLTIAADLSVEDCFDEAATKYITCKPVHGRPAVCDCIFKDPCYIKMIISKGKISGSNESHYFINQTCQGPTITVQQYGIVVIDFSNEMDEDTSFHFHGMHQRNVPWIDGVGNVTQYPIPGKGRFRSIFRANPQGTHWYHAHMRYQRSKGLFGVLIVHEAQSDICEKLGPFEDQPQRKTLLIVDQDANKKQPGKTVQSFCLPDGSNLPVEFTRFSLLIYGKEPATSLLECTGNETHTQFYVVSGKNYRFRIIDGALGTVFVISIDYHKLYIMATDGYLVKPFETDFLIVHVGETYDFILKAKKDILPGSKYPIRIQSLAVNCKNSSELAGQGFVFLVYTNQSSQMTSPTSENLIVQNDRCSNKSNPCTIMNCPFKIMPRSYSKPGTYMKCYDILSLELLFPTPSVDIPRSADVASEFFFNLEGAKPRASIINGIKFKPPAVPILESKDAANECKYPVNCSDPGRKHCPHTVHLTKFNTATRFVLSVLNQGLVGGQNITHPIHMHGHTYFIAKIQYPEYHQNGTIKERNNDLKASACAPAKWKNGTPGGISVTSTTVRKDTVMVPAGGYVVLHFFQDNPGYWFMHCHVDWHLNDGMAIALVVNPERASTPPNLLNRDTKDFCFSVKTFLSKETQYPKDKRKVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHN6</accession>
    <name>A0A6S7IHN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003445</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004406">
        <property type="protein sequence ID" value="CAB4002638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHN6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12395" checksum="62641FAEB909B7EE" modified="2020-12-02" version="1">MEMGISYPCTWKPNSISFIKFSKRARPNSLFWSFKRSGLDCESTHRQRMNFIYVESNSVKLLSSWLLRSYQVDSIHSENHIRNGNYIYTSGAKNHQETRCYVIGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7II17</accession>
    <name>A0A6S7II17_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023858</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009183">
        <property type="protein sequence ID" value="CAB4016599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7II17"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="24304" checksum="C04CADDB80692634" modified="2020-12-02" version="1">MVDLAGFAVSTASLITTLIIHARGAAVTAARVTGKVAKALANLAKKGAPILVPVLNAIATALSWSAKGRSVTDTDEDYQGCDDYSLLEVPDEDYDDRNLGEILGEVELLVDELNKYDEQDILAEIPHLTGNRKYLPNSRMEPDTKREYITPDQHGYSGNLIVDKYKELLAEKVRNDSEYTPMRQPGNGGNPRVSKKGWLIGLGNTKGNTKRWDLNRLLACF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKZ2</accession>
    <name>A0A6S7IKZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A077710</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005508">
        <property type="protein sequence ID" value="CAB4006442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKZ2"/>
    <dbReference type="OrthoDB" id="5984192at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017984">
        <property type="entry name" value="Chromo_dom_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023779">
        <property type="entry name" value="Chromodomain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051219">
        <property type="entry name" value="Heterochromatin_chromo-domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22812">
        <property type="entry name" value="CHROMOBOX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00504">
        <property type="entry name" value="CHROMODOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00598">
        <property type="entry name" value="CHROMO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4006442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="19039" checksum="7229F52196C13472" modified="2020-12-02" version="1">MSFYKELNNLSTADFYEYSTRTNIKRKAVKSSRELFEVERVISRRNRRGKADYYVKWKNYSSLENTWEPEENLNAAAIRAFENPAPAENMIQDARDSLACGILEQLKSKSMLPTVIPFRHDVFRYFFGGKGEISNERGAVLLEKSDFQICDFRGDWDKIARTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISN0</accession>
    <name>A0A6S7ISN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011920">
        <property type="protein sequence ID" value="CAB4022325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISN0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15380" checksum="82BCC3A141D0B933" modified="2020-12-02" version="1" fragment="single">HVPTSDNPADRASRAGDLSDAELWWRGSNWLKDPERWPDDIVPQPTVESNAEAKLVKSVLAVAVNDGNEADEVLKKFPLQKALRVCAWMRRFANNALHKRGRSRVIGSLTTSELARQRQFYIKRAQENCDLEIDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IUF7</accession>
    <name>A0A6S7IUF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011008</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012265">
        <property type="protein sequence ID" value="CAB4023004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IUF7"/>
    <dbReference type="OrthoDB" id="2108941at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="114"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="165"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="216"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="174"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="216"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="750" mass="85989" checksum="26AE47A69183F3E8" modified="2020-12-02" version="1">MDQLTPLVRGYKTFFCFVQIKDVIFPKIPKSTLRSWMKDINISSVPAYPEERDYLKLVIPNLSGAFGLLEERDLTKLLQLKDRKELKTKQRFSTSTPAKDAKSVSLVAEYSDATSEDECAATSEPPLKKRKYPSFTDLENSPCKSDKSHDLSSDVWQVLGDIGETDHRSHEESSNNSAGVHTHATSGGHRELQQPTTPLVHNEETDDLLHEVSSNNSTALRQPSHTNVEDTTQVSERSLSQRGSAYRLQDKDMSPELKAEVKNLIEFYRKPLNPNRDGMPLATSTIEKMDERCRCFLYYVRYVHKSEKQLTLRLCNDTDLVLQYITFLKDNRKLKPSTLSRIISVLISIVKFNYGKTSVDHSTLPEIIFLRRLQSQLERENRLLSHKRKEGMSKQARTFYHANILDALKSLRCKFEECSGPQQVRHLHDFLIISLFVTVMPGRSKELRTLQIHDEGRQGEFDKQSAYGKNVINFAVNGSITMFQTDYKTADKYGAATSTIDSDEMLAYYLKLYLKKRISLLVGKSHNYFFVSYRGEAFSSSGPFSKYVSDIFQREVSIRAGTTALRHAILTYFNSLDESKDESLRESLATLMKHSVRYQKTIYDDRSHEERTKLGRKFMHEKISNGVFSEEEECISGEAKVSDDESSVEIPIRINDICCLLDPISTPQDIRIFVAKVARFSADRTEVYLMHLEKRRDSNNLYAFRPGDIWKESCKSLVYPVDIVYNSSENAYELRTTKQAIYKSVRGDGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IUH6</accession>
    <name>A0A6S7IUH6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A066454</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020011398">
        <property type="protein sequence ID" value="CAB4021363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IUH6"/>
    <dbReference type="OrthoDB" id="5985221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051681">
        <property type="entry name" value="Ser/Thr_Kinases-Pseudokinases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329:SF285">
        <property type="entry name" value="V-MOS MOLONEY MURINE SARCOMA VIRAL ONCO HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="84"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4021363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="27102" checksum="D4664FA5644D0834" modified="2020-12-02" version="1">MVTAVQNSISEKCDDTLTHLKLETASHVNPLPAFNTNVHIPDDKWLSTFKLPIQSCYLKGLAPDNGYFTVKQTANLAKFDWKRFTKEKNLGSGGFGNVYLGKYEGEIEKVVVRKMKGFCEELGSILMEYACFDFGPFGIQKRASTLSNFLHLVDDDFDFTSFAELLPVCAKDIITGLEYLHNKNIAHKYLKPANILVYNQHYSNPCLIKTDFKTAYAECPIVCKLADFGLSKSLELQTMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J2M8</accession>
    <name>A0A6S7J2M8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022444</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013092">
        <property type="protein sequence ID" value="CAB4024547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J2M8"/>
    <dbReference type="OrthoDB" id="8926660at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="286"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="370"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="518"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="518" mass="53870" checksum="8F2B1ADE6FF8D299" modified="2020-12-02" version="1" fragment="single">DKVPGGEDKVPRGEDKVPHGEDKVPGAENKVPRGEDKVPRGEDKVSRGEDRVPRGEDKVPGAEDKVPRGEDNVPGAEDNVPGAEDKVPGAEDKVPGSDDKVPPGEDKVPGAEDKVPGAEDKVPGAEDKVPGGEDKVPRGEDKVPGTEDKVPGAEDKVPGGEDNVPGGEDKVPGGEDNDPGGEDKVPGGEDKVPGGEDKVSGGEDKVPRGEDSEVPGGEDKVPRVEYKVPGGEYKVPGAEDKVPGGEDKVPGGEDKVPRGEDKVPGAEDKVPGAGDKVPGGESKVPGGEDKVPGGEDKVPRCEDKVPRGEDKVPGADDKVPGGEDKVPGGEDKVPGGEDKVPRGKDKVPRGEDKVPGAEDKVPGGENKVPGGEDKVPRGEDKVPRGEDKVPRGEDKVPRGEDRVPRGEDKVPRGEDKVPRGEDNVPDAEDKVPGAEDKVPGAEDKVPGGEDKVPGGEDKVAGGDDKVPGGEDKVTGGEYKVPGAEDKVPGAEDKEELAIMTQATPRRSPKEWFKKYFLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J350</accession>
    <name>A0A6S7J350_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059936</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013216">
        <property type="protein sequence ID" value="CAB4024747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J350"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="20765" checksum="881DF68405054A0D" modified="2020-12-02" version="1" fragment="single">MNDHKVDYPSFSEFVSFIELVSREKNDPNLCLNALEGDRPGERNRDRPGQSYKTAIPDAGQGTKSPPTPVVALHGGRPPALGKPNESKENTLIGNIGTPPKPEEVKGHGEETAKVNTKCIDVCGQQSGGKSCAKICLAHVFVHGQTETKIRAYVVIDDQSNCSLGKSVLFDQLNLRGEPFTYTLQTCAGQSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J740</accession>
    <name>A0A6S7J740_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cell division cycle 20 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A039920</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WD repeat CDC20/Fizzy family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015030">
        <property type="protein sequence ID" value="CAB4027806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J740"/>
    <dbReference type="OrthoDB" id="10263272at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005680">
        <property type="term" value="C:anaphase-promoting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010997">
        <property type="term" value="F:anaphase-promoting complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990757">
        <property type="term" value="F:ubiquitin ligase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031145">
        <property type="term" value="P:anaphase-promoting complex-dependent catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905786">
        <property type="term" value="P:positive regulation of anaphase-promoting complex-dependent catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033010">
        <property type="entry name" value="Cdc20/Fizzy"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056150">
        <property type="entry name" value="WD40_CDC20-Fz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19918">
        <property type="entry name" value="CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19918:SF8">
        <property type="entry name" value="FI02843P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24807">
        <property type="entry name" value="WD40_CDC20-Fz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-0498">Mitosis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="CDC20/Fizzy WD40" evidence="7">
        <location>
            <begin position="40"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF24807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4027806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="364" mass="40100" checksum="3F85F1D50DDCE6FD" modified="2020-12-02" version="1">MKSNSFSGYQNNLRVVYCQNRGSSKAKSSRYISKVPEKILDAPELLNDFYLNLVDWGSNNCIAIGLGSGVYIWNYETQATKLLLEIPNNDYVSSVSWVKDGNVLAIGCSNTRIHLWDVETEKPLRTMLGHAGRVGSLAWNSCILSSGGRTGKIINHDVRIAEHIVSTLHEHTQDVCGLAWSPDGRMLASGGNDNLLNVWSPLAVGQLPLHSLTHHQAAVKGVSWCPWQSNVLASGGGTADRYIRLWNVTTGVCLNSIDTKSQISSILWSKDYKELITGHGFSNNQLSIWKYPSMTRVADLVDHSARVLCMSMSPSGEHVASAGADETLRIWKCFDRSQLKKKSAAGGIVKKTLNTNLTMINRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBP8</accession>
    <name>A0A6S7JBP8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005981</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014950">
        <property type="protein sequence ID" value="CAB4027671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBP8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6357" checksum="AD506D9A2FAFFED2" modified="2020-12-02" version="1" fragment="single">MPIDEDTVHKHLRSLKTKKAIGLDHICARLLKDSANVTVPCLTHLFNKSLSSSKFPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHZ3</accession>
    <name>A0A6S7JHZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081522</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009085">
        <property type="protein sequence ID" value="CAB4016351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHZ3"/>
    <dbReference type="OrthoDB" id="5972980at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="221"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="2">
        <location>
            <begin position="390"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="487" mass="54785" checksum="03A0042FB56B9D7F" modified="2020-12-02" version="1">MSAATNPTGNPDPNPVTIVRHTIPKTIEVQEAHFEVTIFYRSVACDIVVDSKHSKESCQPCATASNTVKRAARKKSKASGTPAKSKASLQACGPDKLRATVRSTRLQVKDLEDRLQQMQTKIEQQGIGISESLENDILKMMGGQSLEATPHMKFSWQEQMNLLQSAKMGRRYHPQVIHFALSIHGKYPSAYRELRDSGALILPSERVLRDYKNYFKPKADINKENVETLRERTSSFTPVQRYVAVVMDEMKIQSNLVFVKVSGELIGFIDLGDPMTNFANLTDEDPIATHALAFLVRGLCTDLKHIIAYFFTGNVTSFHIMPLFWRTVAVLEVSLNLRVCAAVNDGASPNRKFFRLHSKLANEVNCDVVYKTPNIFAPSRFIFFFADSPHLMKTARNCLYNSGYGSRSRLMWNDGQYLIFQHIADLFYSDQDFSLHTLPKLTLDHIVLTSFSKMKVKLAVQVLSKSVAIALRESGKWMSPVPPSSVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JK03</accession>
    <name>A0A6S7JK03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085763</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017690">
        <property type="protein sequence ID" value="CAB4031517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JK03"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF14">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="10917" checksum="54FA69B26D9A851C" modified="2020-12-02" version="1" fragment="single">MDESNPRAKTAANVVDKMFQDGLCDLLPVLYEAATILASIPATSCTAERSFSGLRRVKTYLRSTMGEERLNSIAVINIERAYANRTIKNDMVKIIDTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JKY3</accession>
    <name>A0A6S7JKY3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062717</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017976">
        <property type="protein sequence ID" value="CAB4031907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JKY3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13100" checksum="C0CA472D14F13B0C" modified="2020-12-02" version="1">MEEKTISTATRQNSWYATLTLDCLKRRVYLIFGSGNMNSMDYDGGNKIKIISDASIYSFVLGIIENTLYFRERHSPAICKMNATNWTISRKVRVTIPAWKRIVVTDRSMQPEGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLI2</accession>
    <name>A0A6S7JLI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019215">
        <property type="protein sequence ID" value="CAB4033396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLI2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18487" checksum="08E6FF035E2EEF10" modified="2020-12-02" version="1" fragment="single">VPVQMELLPSDMSKVVRDDEKLSEKQECIKVTEDRSMINAELGSGIVSTSTGEKRKHCEESDYINEVPIPQKRACMGIKHDHTNSVSTHCRLKQKADNLLDREKNLKRRLKTSRMKSHRMKRKVISLTSVVSELKKEKQLVSSNWPVSWRQLCQGFLRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRK3</accession>
    <name>A0A6S7JRK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">THAP domain-containing 9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A066322</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010303">
        <property type="protein sequence ID" value="CAB4019112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRK3"/>
    <dbReference type="OrthoDB" id="10070386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP9-like helix-turn-helix" evidence="1">
        <location>
            <begin position="133"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="2">
        <location>
            <begin position="220"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="3">
        <location>
            <begin position="384"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4019112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="430" mass="48609" checksum="E3A066CE5AF25749" modified="2020-12-02" version="1" fragment="single">VPVQMELLPLDMSKVVRDDEKLSEKQEGIKVTEDSSMINAELGSGIVTTSTREKRKHSEESDYINEVPIPQKRVCMGIKHDHTYSVSSHCRLKQKADNLLDKAKNLKRRLKTSHMKSNRIKRKVNSLTSVVSELKKEKLVSNDCASILETTFSGVPKELMKRLVTPKKKKNPGPYPEELRTFAMTLKFFSAKAYKYVRKSFDLGLPHPSVISSWYTAMDGEPGFTKEALTALKAKVLAGKRDGQEVLCALMLDEMSIRKHVQWDGKKYRGFVDLGTGIDDDSLPEATEALVFMAVSLNSNWKVPCGYFLVNGLTGEEKANLTKDCLTKLHEVGVKVVSFTCDGPTTHQAMLKLLGARLSADNLQAYFPHPCDNNEKIYVFLDACHMIKLVRNTMSDWKVMKDSNGNTIDWKFIEELHKLQETARNCDLRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTU0</accession>
    <name>A0A6S7JTU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002524</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010528">
        <property type="protein sequence ID" value="CAB4019561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTU0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="491" mass="54916" checksum="FD25D5CF3B8E5D87" modified="2020-12-02" version="1">MEDYDDIELEETEKTYPQYDDLNYDDLTTAFSRLDTKVRGEAMYGDDPIVITDLKSELDYVKNLMERRAIEETTFTEGNDGTVNISGPSGSTTVQGVDFVEDPNNVLPDVLDAFDESFDTKWDDIEIRLSKLKKFSEDRLTANKKRDFENQVERVHAVVRVIKGKEGLILDPKNRYVRELIKRSSVRTLNDGTEVLVFRSEQGIDKNGTQIMKCGKKKTPVYSKNSIALREYKDLIKKIKQTPMDPNARITSEESIYEDTREEPQFDTSDEEFIDRENIELIDIGAKLGDLPGLTMEENNELRSVLNPPDGSSIEGRTGPNGALQIQADYFNEAIGKTAGQATEAEGTTEYNALIERIDSFKEARDRTLEQRTVEEAREAQLKDISRLRRFIDWVGKEKVGLVGIAVSTSSLITALLIHARGAIVKTAKATGKVAKALANLAKKAGPILVPILNAVATALSWGAKGVAWLASHLWVLAIAAALMVYNYYTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JU72</accession>
    <name>A0A6S7JU72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063133</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019443">
        <property type="protein sequence ID" value="CAB4033664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JU72"/>
    <dbReference type="OrthoDB" id="5952546at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="81" mass="9311" checksum="1ECAC267D88FE2D1" modified="2020-12-02" version="1" fragment="single">VIWHHLYDRSSCREKGTLYAARNLLDTRNVTMDPHNNFYGCSEFLDKVLSAYLVCGALNHFGMKDIDDTPEQNNYTGEPID</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVR0</accession>
    <name>A0A6S7JVR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075094</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019156">
        <property type="protein sequence ID" value="CAB4033330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVR0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6584" checksum="9B2F02581400E81C" modified="2020-12-02" version="1" fragment="single">WLLDRENDVQITVISDVHCNPTRTAIKRYVAPWTSSLIQTKGNAGLLYCRHCDQLRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVS5</accession>
    <name>A0A6S7JVS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020246</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011001">
        <property type="protein sequence ID" value="CAB4020532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVS5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12526" checksum="972B6AD8EB589532" modified="2020-12-02" version="1" fragment="single">MAEEEPAQESQAATGTMVAAEAEAQVDSHQLVHNEYDDHQPDWDMAIWANQRNIGPVLMRNRTYCLLTIGKQAADALSPSAHPESARQFQSLASAGLHHTKNVLHDSHAKDNVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0J2</accession>
    <name>A0A6S7K0J2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085340</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022567">
        <property type="protein sequence ID" value="CAB4036938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0J2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="36479" checksum="B5E8260712954902" modified="2020-12-02" version="1">MEITQDKIITRLISFTSAAYKYIKDKDNQKFIAKKFFEVLNKVASNGKTLPDNQNTNLFFIRELSSKYFIETKNLAKFNDFQLEKLLVEVGEKPAGKKLSSTRPTRKAPGIPEGVSPARRERKIPLDINFSLPVTKLKQERSIPKPSYKVPISKLGLSTIPKPEPERSIPELKRPTYVKVSHSFSNLIKKYKIQVVSNDPQIQLTRSIPSLKLIFEKNIEVMRGIKYHINLLVRYIMYKGSGDIDEATYNANHFAQVITNINQLDESLDKSISLVLERVSNFIARGSGWQVKNIEKMDIILNTYSPLEGSSYIDLPKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4K9</accession>
    <name>A0A6S7K4K9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054340</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026692">
        <property type="protein sequence ID" value="CAB4040366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4K9"/>
    <dbReference type="OrthoDB" id="5988278at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="323" mass="36739" checksum="1C7EA919D12E5A81" modified="2020-12-02" version="1" fragment="single">MPNVIRTVTRSTMINQYLMFCKEENVEPLSRATLFRILQVREASQQKSLCGVDNTAADGSAGFKKLCKIVDDLQELGQDDNWSKAIKKSLLDGKRYLKTQYRNHCQESESPCPGHCLKFGLSDPKNADLKETCAHEHTTRCNQCDNISTCTNKIERAIKHEGLTFYSQEQQEDIVSDFEQAVKARKAHVMRTTNQERAKQDVLAKLDSSSRAGEVIRNTTFPHCEDNYTAVSCIQGGRENILFPTLWIQIHLSRTGNAAFTFSFHIEMKVVVLFRRWEATFYSIRESDLNSVVGKFFDVVVSFSNIPIIPKDGRCVYVQLGCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KA88</accession>
    <name>A0A6S7KA88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107347374</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028630">
        <property type="protein sequence ID" value="CAB4041627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KA88"/>
    <dbReference type="OrthoDB" id="5954791at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="141"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="39728" checksum="917007978E77C37E" modified="2020-12-02" version="1">MFNSQPQFTIKAVKQKAFDNSCLVETFKIKSGNIADCLEHCLENCRCQSFQICGNTKCQLCSSHKKENSPLLHDKDDCVYATYEVRHLTETFQKLDDQCLAGISCPMKYNCCQQSGLCPENKTCKPINSQEQPWKRFTCECRDGYHGENCDQPIMSCQGYAQGSRMSAEDLPISENALTWNSYRLRKPRMESIKDNSTFLQFTCDYEKYHDIKKSDYVQIPLGNIKMWEEGSEKVVDVLDTNWYYHTSYVTIGSGRGKIGEYDLSDCQIKLYRDGNWPLHVNIYETIPTCTFNSWPYCSGSTHNYFSGYNLPPDCVRKVHRCAQNNNSTTQLWFGMGKDNAAQSSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAL2</accession>
    <name>A0A6S7KAL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger and SCAN domain-containing 22</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026833">
        <property type="protein sequence ID" value="CAB4040471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAL2"/>
    <dbReference type="OrthoDB" id="5988713at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206:SF1">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33206">
        <property type="entry name" value="PROTEIN CBG10425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="698" mass="81835" checksum="832550589A5CD943" modified="2020-12-02" version="1">MKMHERRGAEREYTCNVCGEVFRNIFPLQAHQREVHQVGRGKRTKTPTRRTKRQRTDEPEPTRSSTHVNEGASMSAVVNKGPQPFPQDSILPPSNLPSQLHRDHWRAIRTRQSRGNRVQDWYNYRLSSVNMGQLVNSIQHIFEDQTTVFKLNLSFGFVLFNNETQQTQYHHPSANNSRVFDSPFQICNREDLAQVCEAMQNIDIHEWARQQRPNSKWIVMDVTNVTFYVTKLRDYPIGCSVRLPKYILESRAIVSLDCNEHTGLPYEDKLCFFRCLALHRGCHPHNLERDTHYFYEQYSQDDDFDGVTLEELQELERLFKLNIFVYRLTELHDEDDDTTSIVAQLIQRSHRSYANSMYVNIYGSHFSYIKNLAMYSKSYCCSKCDKMWKTAKALNQHERTCEATIRHIFPGGAYKVPQSIFDLLADEGIEIPEDLNTSEMIQQFVEYLVEVSQESYGLLLDQFSDVFRQIDERVNEVGENEVMEVAAGEDNEQNTEEQMIEEMVGCLMGLNSEDVVHPLLKLQDKLSEYLQELPILGFHSGKYDINAAKNPFFSHLVKHEQVKFVIKRNNNHMCLKTQHLKFLDITNYLAPGFSYEQFLKAYECSQTKGYFPYEWVDSLNKLNHCSLPPRETFHSTLSGTDITEEQYEYCQGVWDEQNMTTFRDFLVWYNNLDVVPFLQAIDKMTRKARKEFLARKEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KD65</accession>
    <name>A0A6S7KD65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcription factor E2F7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A089144</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the E2F/DP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027194">
        <property type="protein sequence ID" value="CAB4040744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KD65"/>
    <dbReference type="OrthoDB" id="5318at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090575">
        <property type="term" value="C:RNA polymerase II transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015633">
        <property type="entry name" value="E2F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003316">
        <property type="entry name" value="E2F_WHTH_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12081">
        <property type="entry name" value="TRANSCRIPTION FACTOR E2F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12081:SF7">
        <property type="entry name" value="TRANSCRIPTION FACTOR EFL-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02319">
        <property type="entry name" value="WHD_E2F_TDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01372">
        <property type="entry name" value="E2F_TDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="146"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="149"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4040744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="19807" checksum="FFC67C78D3D97C9C" modified="2020-12-02" version="1" fragment="single">MFLLSKGGVVTLEDAANVLLEEHDERNVKYKTKVRRLYDIANILSSLKLIEKVHIRGAIGKKPGFKWIGVDIDSLVENAMPSGGNVLTFKTKHSLLPDSTVYPTANHPPTHAYIKQPYLLPSAHGSTLTPNKRWMKSASCSASFVRRSSSKDEGGVKRESSGTADRQDGFLVHEFASSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDH5</accession>
    <name>A0A6S7KDH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020993</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029022">
        <property type="protein sequence ID" value="CAB4041848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDH5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17306" checksum="F78720CFBADB7564" modified="2020-12-02" version="1">MMAKLVLQLQVIVIVLTFFLIVIDHHICGASEDIRIDRDYHDTFSENSNHTNCTGRNANCTKWPVTVDSGCLECTCLGQYKTYLLDRCVRDDELLDNSDVIPGRSIRTYTAISIKVVHEQSGKVEYERERKTKQTTISERDSVLLNHINLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KED8</accession>
    <name>A0A6S7KED8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014271">
        <property type="protein sequence ID" value="CAB4026563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KED8"/>
    <dbReference type="OrthoDB" id="10221010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="16208" checksum="21498F98E3C6BF0E" modified="2020-12-02" version="1">MTTIVVGGLFNAVAFAGAGFLFFRLNRQGYKEEVKRHNQALQKLAKAKEKFYESEVKRRNDEARRRAEILDANKDIEETNRALEDLRDYTRLMDCTASQRRPKLEDYYQPSDKMKRYAMLTMLTVGVLGVEGAYGLARIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGL9</accession>
    <name>A0A6S7KGL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Argonaute-2-like isoform X4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A072581</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010561">
        <property type="protein sequence ID" value="CAB4019638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10252740at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02846">
        <property type="entry name" value="PAZ_argonaute_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.260.10">
        <property type="entry name" value="paz domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014811">
        <property type="entry name" value="ArgoL1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032472">
        <property type="entry name" value="ArgoL2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032474">
        <property type="entry name" value="Argonaute_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003100">
        <property type="entry name" value="PAZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036085">
        <property type="entry name" value="PAZ_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003165">
        <property type="entry name" value="Piwi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08699">
        <property type="entry name" value="ArgoL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16488">
        <property type="entry name" value="ArgoL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16486">
        <property type="entry name" value="ArgoN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02170">
        <property type="entry name" value="PAZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02171">
        <property type="entry name" value="Piwi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01163">
        <property type="entry name" value="DUF1785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00949">
        <property type="entry name" value="PAZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00950">
        <property type="entry name" value="Piwi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101690">
        <property type="entry name" value="PAZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50821">
        <property type="entry name" value="PAZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50822">
        <property type="entry name" value="PIWI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAZ" evidence="2">
        <location>
            <begin position="900"/>
            <end position="1006"/>
        </location>
    </feature>
    <feature type="domain" description="Piwi" evidence="3">
        <location>
            <begin position="1191"/>
            <end position="1412"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="701"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="25"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="95"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="130"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="204"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="222"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="235"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="286"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="304"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="317"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="344"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="368"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="386"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="399"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="426"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="467"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="512"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="543"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="586"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="627"/>
            <end position="648"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="666"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="677"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4019638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1412" mass="159056" checksum="05BF7A3EFBE6AC18" modified="2020-12-02" version="1" fragment="single">MSDQGQGGKKGKGRGRKRGKGRGGQQQRQSESVPGGLQQQTGEQQGATALPEQRQPQQGRQQSQKQPQRKQQPSDEQQGVTALPEQRQPPREKQQQPQQGRQQSQKQPQRKQQPSDEQQGATALPEQRQPPKGTQQQPQQGRQQSLKQPQIKQQPRTQQQPQQGRQQSLKQPQIKQQPSNEQQGVTALPEQGQSPKETQQQSKQGRKQSQKQPQRKQHPSDEQQGVTTLPEQRQPPKGTQQQPQQGRQQSLKQPQIKQQPSNEQQGVTALPEQGQSPKETQQQSKQGRKQSQKQPQRKQHPSDEQQGVTTLPEQRQPPKGTQQQPQQGRQQSLKQPQIKQQPSNEQQGVTALPEQGQSPKETQQQSKQGRKQSQKQPQRKQHPSDEQQGVTTLPEQRQPPKGTQQQPQQGRQQSLKQPQIKQQPSNEQQGVTALPEQGQSPKETQQQSKQGVTALPEQRQPPKEKQQQPQQGRQQSLKQPQIKQQPSNEQQGVTALPEQGQPPKETQQQSKQGRKQSQKQPQRKQHPSDEQQGATALPEQRQPPKGTQQQPQQGRQQSQKQPQRKQHPSDEQQGATALPEQRQPPKETQQQSQKQPQRKQQPGDRTDGAGPSKPPGQPSPASQGDSRPQGPAQPRAQPSTQPSAGAAKPAPPQQPQSPRGAEKPDSSGQRGSTPQSDRARPKPPRRPDGGGRSGRSIQIRANFLPVKIPTSDIHHYKTGIQEKGNKSGEGYTKAEAQKIIQEVVKIYEKENPSGPKVVYDKNGENMYCPTMIPGIGIKESESRKYDLQYTTDNGSKKEFIVNVRYVARISLSHLNEVLEGQHTEIPFDTTQAIQIVVKLRQKMRTIQVRNSFFDYPTGCEKDLGGGVQVWNGTFVSIRPTQWKMMLNVDTCATSFYKGQSVLDFMCEFLDLQNLPRRLDEKQRKKFAKEIKAIKVETTHMNRKQKASGLSFKSAKDETFDCEGRKVSVLNYFRDKYKITLQHPDLPCIKIGQKGSLIPIELCRVVDGQKKRGKLTGAQKKQMIRHTTIPAPDRMQKITELIRKLRYESDPYCQDFCISIDNEMVTIQGRVLDPPLLMYGPGNRLGKEMPHDGTWKNTKQMLDPKELKEWAVVAYINDNIQPKRGGGGGRYSGPEYLDDRGVNNLIDHLVDVGRKKGVRVNENPCYVGTETGFRGTDKLFGDLKARYPNLQLIVVVLPVSGDDYYEEVKHCGDVVHGITTQCIKVEQASSDFSDWRKRETLVNLWLKINAKLGGTTCILDWGVKSPIFHRPVIIFGADVTHPGAGDKSNSSIAAVVASKDFYPALYNAEVRVQKHRQEIIEDLQEMVKILLKKSRASTGAIPEKIIFYRDGVGESQFQEVLMKELSAIQNACRELKEDYTPAITFILVIKRHHIKICPSNKEDQRGKNKNVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJW5</accession>
    <name>A0A6S7KJW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025148</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011099">
        <property type="protein sequence ID" value="CAB4020738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJW5"/>
    <dbReference type="OrthoDB" id="5989338at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="514" mass="58363" checksum="C039A023C31FFF0D" modified="2020-12-02" version="1">MVASRKATKNMDNAISFEQIPTKNLSIILSKDDMESKNVSTGTDQCMSGINISNNCIFKLNNQNTEITGLSKDSKLNPMRIKNLPVRSRYALFYNVCTQKHVTDFTTTGCHLRHRDREPSRIQVKWLTRKFGKSRLLRKRLRHTIKRSVPRSSHLHYIVENIMHCQDITMKCNPDVYCPMKVHTKCRTNCSANNLKFYICEGILADIFYLSGSTNDLYAQQVYKNVNHLKNVCQSALRTDIETNPGPIFYIDPSKTISAPYSQVFDRDYIFEYSESYSGNVIGDCSIEGYQYCVPFHRSFDLLLAENYSAFILTIDSNAVCIFSTTDGKYKVFDSHSRDIYGRGHPQGTCVLLEAPNINNVILYFQSLYRENSQFELRGINIEEVQANCDQNLNNSIRNSALSGNASDESKSTDVSCLCRQCCAISLYSICYSVIKPCNYWDSNTVAAVVYFGTTLYNNTGINTSCDIPQKVEICGTEIDVKLQANIQGIVYDQTKSKLHIESLICHTNETQGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KVL2</accession>
    <name>A0A6S7KVL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A066776</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012976">
        <property type="protein sequence ID" value="CAB4024349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KVL2"/>
    <dbReference type="OrthoDB" id="441285at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4024349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28363" checksum="724C2BD31E21561D" modified="2020-12-02" version="1">MLSSGVIRESKSPYASPAVLVRKKDGGLRVCVDFRKINSKTIRDAYPLPRISDTLEALEGARWFCSLDLQSGYLQVRVAEKDKPKTALTTPFGLYEFNRMPFALTNAPATFQRLMERCLSGLNLKICLVYLDDVIVFARTFEEMLERLEAVLRRLGEFGLKLKPSKCKLFQTKLTYLGHVVSENGVEPDPEKISALPKWLENPPRNRKELQTFLGFAGYYRNFVEGFAKIAAPLYDLIKEPNAKMPRTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L5U9</accession>
    <name>A0A6S7L5U9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047043</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020366">
        <property type="protein sequence ID" value="CAB4034723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L5U9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022735">
        <property type="entry name" value="bMERB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12130">
        <property type="entry name" value="bMERB_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51848">
        <property type="entry name" value="BMERB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="70" mass="8109" checksum="A83A80F0E089EA54" modified="2020-12-02" version="1">MADNNREKSAQEKKREELLLAELVRLVNKRDELVRIEDSQVQEAEKAAQHAEHVVRNTKIPKKQGDCCIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LG66</accession>
    <name>A0A6S7LG66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transient receptor potential cation channel subfamily A member 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A036345</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017711">
        <property type="protein sequence ID" value="CAB4031539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LG66"/>
    <dbReference type="OrthoDB" id="60433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050776">
        <property type="entry name" value="Ank_Repeat/CDKN_Inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201:SF16">
        <property type="entry name" value="ANKYRIN-1-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="330"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="370"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4031539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="395" mass="44320" checksum="B13C2721E5A8396C" modified="2020-12-02" version="1">MVYDRSSEAKATEDSQLDTTRGSTAKLKRFEEILVKGKSGSSRHNEPLQAVVENKLHESALSEENSSILERNRALLQYIATLANSNDNQDQFNYEFVQSLLKGGAEINTADQYGQSIFHEVSRSWNVDVAKFLLKHGCDINKQDSFGRTPLHVSAAVNQSQMTEFLLQNKANIDARTFGDEQAAIHYAAKNGAAQSLKVLLGYHADIDTLDANKKTPLQLAAEWTRQETTKILIEEGAASCSPDSSGYTPLCVLIDRMPNLALDALNQLHKRDVISMKDYYHLQHLETSKRNHETKSTRTALETAVATRKFEVVTHPVMQRLISNKWIQYGRLSTIFDLLFHAVFGIMWTTVCIGTPKSGRALYIPLEDHVWRVVLGLIIILLTVYDIGNHAYGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQD7</accession>
    <name>A0A6S7LQD7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019974</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027180">
        <property type="protein sequence ID" value="CAB4040732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQD7"/>
    <dbReference type="OrthoDB" id="10040867at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18293" checksum="4C634B67F359BD51" modified="2020-12-02" version="1">MAELVLFVVLLFLPINVTPPIAVWSYEKLLYLSSPLLSVFEAIHIVLFIMKASQMVVDQMEEQPNLVKSVILGVAALACLLGSLLSRYIYTVYASHSINRIIEVLVVTSLILLVLSLVKDEGIISEVPCIFFVMMCIVWALAKESAMSKKQIEPPSMWLKYVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LU23</accession>
    <name>A0A6S7LU23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064793</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035779">
        <property type="protein sequence ID" value="CAB4044672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LU23"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16544" checksum="F9CDA4D7C62ADA61" modified="2020-12-02" version="1" fragment="single">SMGKIRDIAGWVIVKESNACLNYIKSCKGSRCDKVQDRKKTEREIKSVLDSLKASKEILLETTRYPESLEHIKTHDRGGKAFATDDFYEYMVAVGSHAVFLLSDKTLTKFKEDSIKLAWKSLLSNEDLKRISETMINNISSKTYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVL4</accession>
    <name>A0A6S7LVL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010225</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020049779">
        <property type="protein sequence ID" value="CAB4046312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVL4"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14343" checksum="B2EC1F8463E2E403" modified="2020-12-02" version="1" fragment="single">MHNEVIIGRPILRRLKVIPKHFPNVVTISKVESLEEELHREFPTTLTDRLPDCAMHGEPMQIHLREDVEIKPTRRLTARQIPLARQAAAEEVVTKLLRQGIIKRVDKPTQWISPGFFVPKSDGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D7I2</accession>
    <name>A0A7D9D7I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078056</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000157">
        <property type="protein sequence ID" value="CAB3978978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D7I2"/>
    <dbReference type="OrthoDB" id="5948131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15844" checksum="8747D55363D9DD96" modified="2020-12-02" version="1">MVLVDYKKAFDMVDHCILLDKLGAYHLDQSSLDWFKSYLSDRKQYVNFKRQSSTTKVITDGVPQGSILGPLLFLVFINDLPLHINTQVDLFADDTTLLAATDYNDINELNEKLSLEVSNVQNWAITNKLPLNTTKTKTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DD82</accession>
    <name>A0A7D9DD82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050807</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000559">
        <property type="protein sequence ID" value="CAB3982953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DD82"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="23263" checksum="146782A7F1650AAB" modified="2020-12-02" version="1">MEELEHHNHSDSEESFAKQQLGPLAHGVESKLLGLPWNKREDTLSIHHDGNGGGDIVGAPGHYDGGRAAGLRCVCRACLPHIVVDAAGLGRYILDVFGRRDVNDGGGESSRMLTKGELAHIILSYEEEAQRVYRDGGENNDGNETILKKEIHGNGGVDGGGGSGASDIVGTPGRYDGGRAADPLCRVCPPRIVVDAAGLGRNILDVFGRCDDGGGGGDDAYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIJ1</accession>
    <name>A0A7D9DIJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034229</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001047">
        <property type="protein sequence ID" value="CAB3986633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIJ1"/>
    <dbReference type="OrthoDB" id="1100386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22823">
        <property type="entry name" value="Gal_Rha_Lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000922">
        <property type="entry name" value="Lectin_gal-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043159">
        <property type="entry name" value="Lectin_gal-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02140">
        <property type="entry name" value="SUEL_Lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="21422" checksum="C8205E8657C288BC" modified="2020-12-02" version="1">MARFGVAVIVFSLLVFSTDASEPPLVFCDGYDISQLAKCKDNHGIRVDSAKYGRDQDIMCQPDVKDENSTRICRMKDVHDIISPLCDGKQKCAPLTINTTNLGEVEKCPQNVKKYLIMHIECLTIKEPDDDKTQRPNVVEASKKETINILQHEKARTSTGILFQVQHDSSTSVKPVGLFILLVLGTFCSLYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJH5</accession>
    <name>A0A7D9DJH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001062">
        <property type="protein sequence ID" value="CAB3986729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJH5"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12027" checksum="7CE30D4E49608B50" modified="2020-12-02" version="1">MYGISGNLYDWFSSYLCGRTQRVVVEGVASEWSPVTSGVPQGSILGPMLFLLFINDLPDAIPQATSTGLYADDVKLYRAITSNEDSACLYRPPCRALEFGALIHHIQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLK4</accession>
    <name>A0A7D9DLK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Formin-2-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A077419</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the formin homology family. Cappuccino subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001224">
        <property type="protein sequence ID" value="CAB3987732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="427644at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030866">
        <property type="term" value="P:cortical actin cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04371">
        <property type="entry name" value="DEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.2220">
        <property type="entry name" value="Formin, FH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000591">
        <property type="entry name" value="DEP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015425">
        <property type="entry name" value="FH2_Formin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042201">
        <property type="entry name" value="FH2_Formin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45920">
        <property type="entry name" value="FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45920:SF7">
        <property type="entry name" value="FORMIN-G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00610">
        <property type="entry name" value="DEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02181">
        <property type="entry name" value="FH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00049">
        <property type="entry name" value="DEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00498">
        <property type="entry name" value="FH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101447">
        <property type="entry name" value="Formin homology 2 domain (FH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50186">
        <property type="entry name" value="DEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51444">
        <property type="entry name" value="FH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="100"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="227"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="553"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="711"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="816"/>
            <end position="880"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="940"/>
            <end position="962"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="132"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="179"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="201"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="227"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="270"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="299"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="315"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="369"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="401"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="429"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="553"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="570"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="723"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="762"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="856"/>
            <end position="871"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="940"/>
            <end position="960"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3987732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1435" mass="158938" checksum="9D7097221E383C56" modified="2020-12-02" version="1">MALSKTVLKSRLEEAVSSSNLGSKIWCGQTYNDVFTGETLINTLVADSTIFPSRNSAVEYAQSLLDTKMITCITKRRKFDDTDRLYCINRKELENAVGDDSTNIVRTTPKGKTDNSPNLKTAQVKKEPLGKPNSQENINGMNSHQQSNHVTPTSKTTDSNGLRSTNLQRLLEKDAVQANRRSSSPNKTTPSSAKGNFVGVLKDKRSESPNERRLTANKIEVVLSQQEFEKQPQQSSSVILIEKPSLPPTETDGPKTAKNLKASPSPKTPDVAKSDIESKKSEDKQKVKKSLSPSLTALIEKDTKNSQREKKNVEVNGTSSPKTNENGPSKSGELSSSWEAFEMKLQSKVKKSAEKPGRGSPDTRGSLDTRGSISKNMQIVIEDSTNAGKELEKTVGTVSAETRDSEDWKAVSPEKIDTGMSSVPVGRRLSRENEGKAGKTSNEDSPVRLSVNGDQIIIPSVRSKKNSFLTGEENSDSNGGKTTSGRERGPSLSFNDDPKTVIIEDTIKQSNGIKTGHKISEKRERVPSFHLTEDTVIIENDIGPNNLCAETAVSRTPSQSSTNSRVSTCSERKGLSREVSSESAESKPRTASFGKPGIERGLTGSKIETSGRNGDTRGLNGVTRGVMAIGKQKSIEIEIPGSDKQLNSKDENLVNTNGRAMPRSLADLLARDETLPPESQSRVVSEQSSADNTNFYKDKLKELKKTTPYYASGPIKIGDRGNGSANQGKAGTTSPAYQGKVSNTGPDLQNGLDTVSDKTKVSESNSTDVNNNSEVKENLASNTKVFKSNSVESTSSQKSEFTVADGKQEYSGKVMRIPSGGTAIGHKPCTDQNKTHHEKPSPTYVMPRLNLGSHHSPLSQGSPTTVASSPLVNGESSPSEELERRLAEFEIHKRSYENKITELQLQVDYLRRQKNGQLDEIDSTMSISDVTSLYSPYSTPVVSPGNSTVTSPSPTPQATPRDSMVLGNNVLSPMSPTPPPPPALPFIPAPPLVPEKHVKPNKPVVNPKTEMKPLFWNRIIASNDSMPKDKGKCVWKTIKEPAIDTNEFEKLFSKKAPHRKLNRTKSLRDDKHFAHINGKKVAKLLDTNRSRAIGIKMSSLNCQLEDIRNAVYNMDTSVVDMESLQSIYDIYPKEEEIQIIEEHLKKEPAVPLDKPEEFMNQLRKMKHFKERLECWLFQDKFSEIIYGIERSLACITESSNVITTNSEIATLLGLILAYGNYMNGNTQRGQADGFYLDVLLKLRDVKAKDSDMNLLQYTVKQYLKQYERSLDKTKNESRLPSPVSLANAAQVSFDKLKEELLKISLLLDETEVQAKKILDVCSPAQRNPFENKMRTFQTTAKRKISEETEKMAKAEVAFLEAVEYFRWESSEKKETPQEFFGLWAKFVDEIKICVKLEKQQQQIAKKNFSKVEHLNQIREAATKFRKRRQSVDIIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DWA6</accession>
    <name>A0A7D9DWA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002702">
        <property type="protein sequence ID" value="CAB3995635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DWA6"/>
    <dbReference type="OrthoDB" id="2384350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13486" checksum="4A8704C7F30C7906" modified="2020-12-02" version="1">MEITGGYYFDEVFSLLNLIGALSSLFAIPASVILSRKAEVDQFMEGLGPLLQRIKNHPEKFEPLFVAGACKPPLSEDLFSIVDYDDVDERMKEYFTRYVREASNPCNLDFKNYFSSVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DZ05</accession>
    <name>A0A7D9DZ05_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087197</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002917">
        <property type="protein sequence ID" value="CAB3996652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DZ05"/>
    <dbReference type="OrthoDB" id="8961048at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="28276" checksum="FC1452A48662CAC5" modified="2020-12-02" version="1" fragment="single">ENLKSTYTQRKLDELINSNPPATKEGLNNFSNQFQEIISDAAKKSLRIKKTKYRNKITNVCNKKWFDKECRLKRHFVRKLANQKHRDPLNSEIRKKYHEALKIYKDTLKHKKEIFHEKKLEDLEIAAETDPNSFWKNLKNMSDSCDDLSSSSTQITNQKWISHFENLHTKHNLGPKQEGILKNLELLENNIDDDNTLDDPITEDDIISAATKLKHKKSAYSDRIRNEMIKSSVNILLKGYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBT2</accession>
    <name>A0A7D9EBT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026378</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004991">
        <property type="protein sequence ID" value="CAB4004761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBT2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="59" mass="6974" checksum="DC965CD99A3310E5" modified="2020-12-02" version="1">MDSEDECVQGNTVAKNHGLNPNKRKKKRKKMKGMKKRKKKNEDEKEESLTVSFIFLFVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDB8</accession>
    <name>A0A7D9EDB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A071820</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005867">
        <property type="protein sequence ID" value="CAB4007657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10693069at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1875"/>
            <end position="1894"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="340"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="525"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="569"/>
            <end position="680"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="696"/>
            <end position="782"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="799"/>
            <end position="1088"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1108"/>
            <end position="1593"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1605"/>
            <end position="1666"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1723"/>
            <end position="1742"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1918"/>
            <end position="1937"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="340"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="596"/>
            <end position="611"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="619"/>
            <end position="628"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="629"/>
            <end position="650"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="652"/>
            <end position="667"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="716"/>
            <end position="725"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="726"/>
            <end position="741"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="742"/>
            <end position="752"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="754"/>
            <end position="769"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="827"/>
            <end position="842"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="862"/>
            <end position="875"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="907"/>
            <end position="920"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="981"/>
            <end position="996"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1057"/>
            <end position="1071"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1108"/>
            <end position="1124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1147"/>
            <end position="1162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1185"/>
            <end position="1200"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1261"/>
            <end position="1276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1300"/>
            <end position="1314"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1375"/>
            <end position="1390"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1391"/>
            <end position="1401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1413"/>
            <end position="1428"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1489"/>
            <end position="1504"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1527"/>
            <end position="1542"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1565"/>
            <end position="1580"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1641"/>
            <end position="1657"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1723"/>
            <end position="1733"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1922"/>
            <end position="1937"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1937"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4007657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1937" mass="226018" checksum="41701BAD6474C805" modified="2020-12-02" version="1" fragment="single">FNNLDLNDSLRTITKNSDILHDIADRYRDSNDAGNHLKKEDELNSKTNSLTPTDEHGIDFNTLNSNKEFNVDVGSENSHEFPYDSSEIRFNDDLGKDNNNLNSYEEFADTDNEYENAHEIDYASTETNSNNNLNSYDELVDDDDEFENDEQFYDEIDDINSNINFNRKFGHDNFNSYEKLADDDEFENDNGINEDTTIPSNDNFGADYNNLNSHEEFADHDDAFENDDEVDDDRKIDSNDNFGEHYNNLNSYEKFSHHDEFENNDQLDDDRKIDFTDSFGKEYNKLNWHEEFSDDNDKFENDDFIYDDDFIYDDSKINSNDNFGEDYNNLNSHEEIADGNDEFENDNEIDDDSTIDSDNFSEDYNNLNSHEEFADDDDEFEIDNEIDDDSKIDSNDNFGEDYNKLNSYEDFADHDDEFEKDYFIDDDNRIDSNDNFGENYNNLNSLEEIAHGNDEFENDNEIDYDSKIDSDDHFGKDYNNLNSYEEFADDDDEFENDDIDDDSKIDFSDNLGVDDNIWSPKYEETAQFQNDDEVVDDTKIDSNDNFGEDYNKLNSYEEFPYDNEEFENDNEIDDESRIYSDDNFAEDYNNLNSYEELADDEDEFENDDEIDDNSKIDSDDNFGEDYNNDEFKIDNEIDDEGKIDSDKNSYEELPDDHDEFENDDDIADNSKIDSDDNLGVDDNIWSLKYEEIAQFQNDDEVVDDRKIDSNDNVGEDYNKLKSHEEFSDDNDEFEIDNEIDDEGKIDSDKNSYEELPDDDDEFKNDDDIDDNSKIDSDDNLGVDDNIWSLKYEDIAQFQNDDEVVDDRKIDSNDNVGEDYNKLKSYEEFSDDNDEFEIDNEIDDGSKIDSDDNFGEDYNNLNSHEEFLDDNDKFENENENEIDDDSKSYSDDNFGEDYNNLNSYEQSANDDDEFENDDDIDDNSKIDSDDDIGEDYNNLNSYEKFADDNDEFGNDNKIDDDSEFDSNDNFGEDYNNLNSYEELADDDDEFENDDDIDDNRKIDSDDNFGEDYNNLNSYEEFADDNDKSENDNEIDDDSKIHSDNFGEDYNNLNSYQELADDDDEFENDDDIDDNNKIDSDDNFGEDYNNLNSYEELADDDDEFENDSYEQLANDDDEFENDDDIDDNSKIDSDDNFGEDYNNLNSYEELADDDDEFENDDDIDDNNKIDSDDNFGVDYNNMNSYEELADDDDEFENDDDIDNNSKIDSDDNFGEDYNNLNSYEKLADDNDEFGNDNKIDDDSEFDSNDNFGEDYNKLNSYEEFSDDNDEFEIDNEIDDGSKIGSDDNFGEDYNNLNSYEDLANDDDEFENDDDIDDNNKIDSDDNFGEDYNNLNSYEEFADDNDKFENENEIDDDSKSYSDDNFGEDYNNLNSYEELADDDDEFEDDDDIDDNNKIDSHDNFGEDYNNMNSYEELADDDDEFENDDDIDDNSKIDSDDNFDEDYNNVNSYEKFADDNDEFGNDNKIDDDSEIDSNDNFGEDYNKLNSYEEFSDDNDEFEIDNEIDDGSKIDSDDNFGEDYNNLNSYEELADDDDEFENDDDIDDNSKIDSDDNLGEDYNNLNSYEELADDNDEFENDDDIDDNNKIDSDDNFGEVYNNLNSYEKFADDNDEFGNDNKIDDDSEIDSNDNFGEDYNKLNSYEEFSDGNDEFENLNEIDDDSKIDSDDNFGEDYNNFNSYEEFADDNDELENVNKIDNDSEIDSNDNFGEDYNNVNSYEGFADDNDEFENDNEIDEDSKIDSDDNFGENYNNVNSHEEVADVYDEFENDNEIEDEEKIDSDDNLGEDYNNLNSYEEFGDNDEFGNDDELDEFNNIHSNREFGEDYDEELVDDGGDVVKGMFHNKRSRRSVDIDTIIEKKDEAITTGKSTANVFMKNKGSLLCILLIIVAIIMVYITYNKAKQYLNMTTAKPVLTEIVVSGPSRHQKQENLNRDTVTEDTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEW9</accession>
    <name>A0A7D9EEW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 ubiquitin- ligase DZIP3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001124</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005237">
        <property type="protein sequence ID" value="CAB4005563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5394701at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027897">
        <property type="entry name" value="DUF4559"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691:SF3">
        <property type="entry name" value="HTH-TYPE TRANSCRIPTIONAL REGULATOR RV0890C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691">
        <property type="entry name" value="REGULATOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15112">
        <property type="entry name" value="DUF4559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1776" mass="204089" checksum="8E4C7F5C69B3378B" modified="2020-12-02" version="1">MNSSKEHINWITVGEVINLIKKPVALYTTHIVERWHVTLRKDCLAFGRCPNPGNCQMKKKPDDLCRSCNGWYKELAKSHLNKDERKIQWRKNCDTSKLPVDPWEVAKFFMPVLGDNKGTVIEAESTDLSHLLNVLVWMKDVAFAPDRRVDRDLVKNLRSGVRNPWAHAPNQELADADFNNAFDIANKFVANLDNVFSCNEVKKCIEDMKLVQTNKISNVVEAELKALISLRGVLGADVSQLKGEITRLKEDQSFDRQVIKEQERMLENLVNYRKECSTRIDRDKLFCREISEIRADIKSLQGTKDRFQQKSCLPDKPPTIFGRDAEVKKIVCSLVYEDCGIVSIVGGPGFGKSTVAVEVSHHLSDSHDIEVIFSFLSNVSTVPEVIQRLCRDVGVNPGDDPESSLIFWLKSIEKKVVLVIDNIEQLLESNVISQFTELAVTLRKNSRRQLQILTTTRTEFSIPDGTTENVHLRELDKSASVELLRKFCRNKEVKDENLSDLAKLCGFVPLALCITGSRIPRLDDPAELIKWLKEKPMKALQSTDKTQCVRKAIEFSFQMLSNEDKKALARLSVFNGNFQRKSAEEVIERDDFETQDLLEQLVARSLIQSSSDNRFVIHLLIRRYLADHDQLQDEKAIAQGLMVKHFLKMCHLWTIDSYAKDGFTDAREKLKKDSHNVEENFKICSQDLAKDRNPKIVESMESSDIYKSSSRFFYNFGWDILPLTVLRCFYESCVKLAEDGKQLAVQITFRCLVADQEGRKSAWKSTEYIDMMDAIKDALDQNKAVLKEDKSLYSYCYYFYSRFHFNQAKITPCPDLEEDDLAPLPENNDRSPMENADEALILIQLARLNKKRAIKVFHSDEKKYEDYMNCAKSFYDQALSTAKELLGDHELTCTCHKLLGDLYLLWQKNEEALGYYSVAIKLSRKLQLDSNEAFVYLLKNYGLCFRFLRRFEASVENLNDARDIADKLAEKYSPCRASVYCALAEMYRAWKPDCQESAKYAKVAKEMQVLLDSRTVKSLEDIIKTAEEWMKEKTHIGPLQNIVNVVKTDRQLQQNSSIPDKPLTFVGRWAEVNKIIYSLVENGCGIVSIVGGPGFGKSTIAVDVSHHLSNKHDIVVIFSFLSNVSTVPEVLLRLCLDVGVNPREDPESALMFWLKNIEKKVVLVMDNIEQVLEEEVRSEFTELVVTLRKNSQQQLQILTTTRTEFSIPEQTTENVQIGELDEKSSVELLRKCCPNTEVKDSCLCDLANLCGFIPLALCIAGPRIADLDDPFELINWLKEKPVKTLLTSDKSQCVQKAIEFSFQKLNDDDRKALARLSLFNGNFQRKSAEEVIERDELETQDFLEQLVARSLMQRSSDKRFVIHSLIRRFLADHHQLQDEKVIAQGLMVKHFLKMCHSLTMDSFSKNGFTSARELLKTDSHNVQETLKVCCQDQATNLNPNIFELLVSSDIYKFSSRFFYRFCRHLLPQMILRNFQESCINLAKIRKQLTIQITFQCLVADQESRKSAWKSTEYIDMMKVIKDALDQNKAVLKEDRSLYSYCYYFYARFHSNQAKVTPCPDLEEDDLPSLPENNDRSPMENAEEALILIQRAHLSKRRAMKVYRSDNEKYEEYMNCAKSFSSQALSTSQELLGDHELTCISHKVLGDIYSSWRKNDEAWPYYSDAIKLSKKLKLDSNEPFVYLLKNYGSCLSFLRHFDESVEILNEARDIADKLAQKHSPWRASVYCALAKTYRAWKPDCKEAAKYANAAIEMGESLDSRNVKTMKDIIKTAEEHME</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGL8</accession>
    <name>A0A7D9EGL8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Glycine betaine transporter -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A007251</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005951">
        <property type="protein sequence ID" value="CAB4007901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGL8"/>
    <dbReference type="OrthoDB" id="1045822at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000060">
        <property type="entry name" value="BCCT_transptr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30047:SF7">
        <property type="entry name" value="HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30047">
        <property type="entry name" value="HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02028">
        <property type="entry name" value="BCCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="48"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="193"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="222"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="370"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="452"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="478"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="537"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="550"/>
            <end position="570"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4007901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="570" mass="64094" checksum="37A249814D9B75B1" modified="2020-12-02" version="1">MNITFFHWGIHGWIVYTLVGLLMAFIAYRKDLPMTIRSCFYPILGDRIFGIVGDIIDIFSVVSTMFGVATSLGIGVKTLNSGLNRMHSGVEETTNNQIIIIWAITCFATISVVSGLKLGIRRISEVCFGLGIFLMLFVFFHDNTWFFLNLYVQSIGYYFQYIVQYAFHTDAFAQLGNAPDGKQAVNWMDEWTVFYWGWWITWSPFVGMFIAKISRGRTVRSFINATLTAPILYLFLWFTIFGGAGLKMERDAAKAGINCSSTLGGENATEPFNRLFRLSCRTDSQMYFDVIQQYGNNLGGFLRVVSLISAVLYFVTSSDSGSLVIDCLSANGNPDPPIIQRIFWAFTEGACATALLKAGGEKAIDALQSVAIATGLLYAVILNLMCLSLWRTMQMEAGDYDHCRNTFSSGLVSIFDKPSWRRLQDILISIVAPWWPAGRAAGMLYMNHPWRYMIVMATLFYGWVFLEILQVVEPGLAYVGWVVLCFFFTYLASIRLAMRGHSDIKGSIIEDAIAVSIFYPLAIDQMYRHMLIEEKSKKDDPGAGSYLMKTVDEPAIVKDGNEKQQKPESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJN0</accession>
    <name>A0A7D9EJN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A030081</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006517">
        <property type="protein sequence ID" value="CAB4009622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJN0"/>
    <dbReference type="OrthoDB" id="1681765at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF269">
        <property type="entry name" value="NUCLEASE HARBI1-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4009622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="389" mass="44770" checksum="C47AAF898A1F2119" modified="2020-12-02" version="1">MDARKLLASYISLAILRRRNKKEKRKRAIWTRSWLKRSNRGVYRQLLEELRLEDPENYCRYLQMDTSTFESLLKKVECQLQKKDTIMREAIPAGQRLALTLRFLATGESYAGEEDWMKIATGFEEKWQLPHCVGAADGKHIRIIHPPKSGSEFYNYKGFFSIVLMAVVDTDYNFIFADVGCQGRISNGGVMKNTIFWKTLVNNALHLPEPKPLPLSLSQYLVDDERIPVPYFLAGDDAFSLEPNVMKPFAQRALTDEKRIFNYRLSRGRCVSENVFGILTNRFRVFSTLFSIKPDNVTKVVLATLALHNFLGSTNSSRYIPSGSVDSEDQHGEVRHGSWRNEELVSSGMVSISNSRKRRQSVKAEDIRQALCEYFNNEGHVPWQWNVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EL02</accession>
    <name>A0A7D9EL02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">BCK1 (YJL095W)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006813">
        <property type="protein sequence ID" value="CAB4010515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EL02"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9201" checksum="32B1B63AC556455A" modified="2020-12-02" version="1">MDVYALGCIIFEVYTSQRVWPDIKSPAQLMGNNFHNEYPPTAKLDERPHIKEIVDSCFKEPEERLGMDKLTSCLDALVNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EM65</accession>
    <name>A0A7D9EM65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Intersectin-2 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079276</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008013">
        <property type="protein sequence ID" value="CAB4013764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EM65"/>
    <dbReference type="OrthoDB" id="2015333at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097708">
        <property type="term" value="C:intracellular vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042734">
        <property type="term" value="C:presynaptic membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060090">
        <property type="term" value="F:molecular adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0150007">
        <property type="term" value="P:clathrin-dependent synaptic vesicle endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00052">
        <property type="entry name" value="EH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000055">
        <property type="entry name" value="Intersectin-1 isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000261">
        <property type="entry name" value="EH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11216:SF170">
        <property type="entry name" value="DYNAMIN ASSOCIATED PROTEIN 160, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11216">
        <property type="entry name" value="EH DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12763">
        <property type="entry name" value="EH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00027">
        <property type="entry name" value="EH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50031">
        <property type="entry name" value="EH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="356"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="408"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="675"/>
            <end position="881"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="366"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="675"/>
            <end position="837"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="858"/>
            <end position="881"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="881" mass="102398" checksum="BB678EAD90AE8E26" modified="2020-12-02" version="1" fragment="single">MSGNTWVVTADERQKHETAFLSLKPSNGRITGEQAKKVFLSSNLPPATLGQIWNLSDLDKDGQMTQQEFSIAMHLIQCKLKGINLPTSLPLSLKTSSRGNAGASLLNPIENGFNTQTANQSTGWSSTMSTGPQSQPVTGWSVGLASNFPPPLLPVNNQMQASAAPATSRLPISSSHNFTPSFGMPTSNGLGMSSISMTTPMPSVNPAMSPMSMPVSSMSGVGQPMRQHPAARTGSFTNMAPQAGPSGEPTITAIPPNSRLKFNQLFKANDYEKNGFLTGEQARKIFLQSLLPPPVLAQIWDLSDVDKDGHLSMEEFAIGMHLVESAKSGKPLPPVLPANLLPQQFKKTMSESMESENLEGMPGGQITRQRSVSSSSGNDELAFLRSETFEDKRKQNFERGRLELERRRQEVEEQRKKLKEEHERKERLEEERRQRAKIEAEQKRQAEIEKQRKQQEEMEREQEALRKKMIQQRLQAQIEAERQRQLEWEKRKKEELLNHKSLEKDIVTGLQVRKDKMVLERENLEKRMESLREDLRKQKKFYTDCIAATNALIKSRERKIAEIADIENKRKLCKQQLPGLSSEQDRLQRELNKHESSIMDESYGNALSSIEDTTCDIRRQVSNKSNLTSESETKRKMMIQLNDQLKQIRAELQNQMDENGSLRQSLEVKKNEYQAMKQRQEEERKKRQEEELKLKREAEHKRKKEEEERKQKEREMEAMRLERERQRQEQERRQKLQEQKMEEERQRTLQEQTRLELERKQQEQRAEEENRRKLQEQQRLEQERQRQEQQRLEQERQRQQEQQRAEKERQRKLQEANEAKKQVQLRQEDLVNKDKIVQEQATLVAKPRKPTKPAPYNKAEKEAEVRKKVQEMQRIRNEQKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EML4</accession>
    <name>A0A7D9EML4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-keto-alpha-glucoside-1,2-lyase/3-keto-2-hydroxy-glucal hydratase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007893">
        <property type="protein sequence ID" value="CAB4013458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EML4"/>
    <dbReference type="OrthoDB" id="5982296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.560">
        <property type="entry name" value="Exo-inulinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010496">
        <property type="entry name" value="AL/BT2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06439">
        <property type="entry name" value="3keto-disac_hyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3-keto-alpha-glucoside-1,2-lyase/3-keto-2-hydroxy-glucal hydratase" evidence="1">
        <location>
            <begin position="82"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="531" mass="59797" checksum="F875451F29D0845D" modified="2020-12-02" version="1">MALANGNDLRVYFRKDEDCRPREIDRVLENITTTKTRVLFRLQEDLSETVRDGSAYYLVYGNKDAGKAKQNPENVYLFYDDFSDSNLEKRWQKNWGDIDAENGVLKLKTGQTPDKNAAGISILIKDGHEWEDIEVELDFNEIKNDVAPGPLLRVQDARIQSTTAWWFEYVTGTKGCTMRPYKNSKDGGWLYQGTLNEPLLQGSWNHAKYRVVGDRFSHWVNNQLLHDNVKVSTQWMITKGTLGLGCHSGQNGCYTLYDNIKITKYIPVLPTVSLGPECKVDLKKFHGLGTSKANPATSCKQIHDILLQDGKLENGLYWVKTSADRSVPTYCDLLNGGWTLVGKVSGFADKLYRFWLIKNYNVDALDSPALPSKVGCIDARYLATYHASTVMFSSGDNENGIGSKWVQWPLPQGRESDSLWTHSVGRTTVSKARMHPVTVKAWNGKEQPCFQNKYGIMPFLQHGGSYPSATYNKAGNSRKNDYCMSVGVLKTGTTADGWTQNGNGYDSPRNSSDWANSQKNHVSPYLTVWLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ERB6</accession>
    <name>A0A7D9ERB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol fusion</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044538</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008623">
        <property type="protein sequence ID" value="CAB4015204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ERB6"/>
    <dbReference type="OrthoDB" id="5988675at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="144"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="47165" checksum="3AA2A874550B9AC0" modified="2020-12-02" version="1">MVPKQEPVVEANLTDEVKPKTRKDRLAQHKEKVEQIVHYLRHGKHRDGLTKNQQRVVRGQAKNYIFDETNNELYYTGGKEGIRRKVVLTIEEIGEILHHHHSEAMGGHSGVNATLNKISNYYCWNGMKEDVQEYIYSKIKTQAPELIPIKVNEALELVGIDLIGPLPTTAEGYKYVCTFTDYYTKFVDFFPIKSKAAEGVAKCIKKFTCRWGAPARLLSDQGREFVAKVNDEVCREFGIKRSVTSAYHPQTNGLDERTNQTLKQRLSKLVNEHQNNWCDFLDEVAYSIRTQKQASTKYTPFYLMFGRNPNSAQMITVVEDNSSAPERTEDLLDHETGERIAKSEATRQQVLSNVELAQEKQKKQYEKRKAKGVKTFEIKVGDTVYKRQMKNVSRKGGKMEPRWMGPYRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EY21</accession>
    <name>A0A7D9EY21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Atrial natriuretic peptide receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A012974</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010180">
        <property type="protein sequence ID" value="CAB4018817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EY21"/>
    <dbReference type="OrthoDB" id="1890790at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004383">
        <property type="term" value="F:guanylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001653">
        <property type="term" value="F:peptide receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007168">
        <property type="term" value="P:receptor guanylyl cyclase signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.1230:FF:000030">
        <property type="entry name" value="Si:ch211-215j19.12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018297">
        <property type="entry name" value="A/G_cyclase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050401">
        <property type="entry name" value="Cyclic_nucleotide_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11920:SF335">
        <property type="entry name" value="GUANYLATE CYCLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11920">
        <property type="entry name" value="GUANYLYL CYCLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00452">
        <property type="entry name" value="GUANYLATE_CYCLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="337"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="359"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="597"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4018817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="597" mass="67005" checksum="751648D2A3953F1D" modified="2020-12-02" version="1" fragment="single">TIHELLSLDNFASFHPIQSYICSKSSRIYSLFALLYRHLGFIILNMMLPNEFGHSAQERVLLLESKRSLSPQTSISPTLTKPSILLPLISIKISNNQIVFDRTCMPTVYCYPVKLTIADLILAKSICSQTQFSHIINRLLTSLVRTDLTLDKIRRPVLIQFCKTHGRFPLPIITILHPISFGMSSALSLKPGSHMPAVFLQFYHYASTCRRNTGKVELKSTFPAYRRSTTGIVADLVKKIICLGPPAFRPIVKESLPKLEVLKDLMVNCWNEDPERRPTFYEINNTVRRLKFGKTTNIIDNMVNMLEKYANNLESLVEERTIQLVEEKKKTDELLHQMLPPGPRSKVQGPRSKVQGPRSKVQSKVQSVASDLKHGKPVPAESFEEVSIFFSDIVGFTKFSAQITPLQIICAYDVYKVETIGDAYMVVSGLPIRNGRLHAGEIADFALHLLSSLKTYQVPDFADYKVQLRIGLHSGPVCAGVVGNKMPRYCLFGDTVNTASRMESNGEALKVHISSEFQANLMTLGGYNVVERGETLLKGKGLGRLSQLKQCENSRIKASPSSVCNGWKCTKQALTDREAAQSRKDYKECHLFVESFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HI37</accession>
    <name>A0A7D9HI37_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 15">Dipeptidyl peptidase 3</fullName>
            <ecNumber evidence="4 15">3.4.14.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 15">Dipeptidyl aminopeptidase III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14 15">Dipeptidyl peptidase III</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A057284</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>Release of an N-terminal dipeptide from a peptide comprising four or more residues, with broad specificity. Also acts on dipeptidyl 2-naphthylamides.</text>
            <dbReference type="EC" id="3.4.14.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15 17">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="15 17">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 15">Belongs to the peptidase M49 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.14.4" evidence="4 15"/>
    <dbReference type="EMBL" id="CACRXK020000622">
        <property type="protein sequence ID" value="CAB3983513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HI37"/>
    <dbReference type="OrthoDB" id="4694525at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008235">
        <property type="term" value="F:metalloexopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.540.30:FF:000001">
        <property type="entry name" value="Dipeptidyl peptidase 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.540.30:FF:000002">
        <property type="entry name" value="Dipeptidyl peptidase 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.540.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005317">
        <property type="entry name" value="Dipeptidyl-peptase3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039461">
        <property type="entry name" value="Peptidase_M49"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23422:SF11">
        <property type="entry name" value="DIPEPTIDYL PEPTIDASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23422">
        <property type="entry name" value="DIPEPTIDYL PEPTIDASE III-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03571">
        <property type="entry name" value="Peptidase_M49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF007828">
        <property type="entry name" value="Dipeptidyl-peptidase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 15" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="7 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 15 17" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="8 15" id="KW-0645">Protease</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 15 17" id="KW-0862">Zinc</keyword>
    <feature type="active site" evidence="16">
        <location>
            <position position="413"/>
        </location>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="412"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="417"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="469"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00014713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00031288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00032119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRNR" id="PIRNR007828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR007828-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR007828-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB3983513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="682" mass="77232" checksum="AD476E6DF6B3EC05" modified="2020-12-02" version="1">MANTTDISQFLIPNEVPFNFLECKKAFAGLTAKKTAQQGESGLSDNEIKSLIVFVASFFGNMGNYKSFGDTKFIPGLAKERFKDAITCSVAYKKEKEIIENLCTSVLDDLYNLSNRRTQLGLEEQGLSTYYSSNCTRDDVVLVQDFMKEKEISPYNTRLFKVEKEGNVEYQLRLASVATTAEPLPGPDGQEDTVPSYLGEHVFKKNTIKVLRGDYSGILKEMVQHLTEAEKYAANSNQSAMLKDYIHCFNTGSIDAHKNGSRHWIRDKGPVIESYIGFIESYRDPFGVRGEFEGFVAMVNKEMSKKFANLVNTATDLLPLLPWPQEYEKDKFLRPDFTSLDILGFGSSGVPAGINIPNYDDIRQREGFKNVSLGNVLASHSSNEKVTFIAEEHQELYSKLKAPSFEVQVGLHELLGHGSGKLFQLNEDGTYNFNDKTLVPDTDTVVNSWYKPGETWDIIFQEIASTYEECRAECVGLYLCLNNKVLSIFGHEGEEAKNISYINWLNMVRAGLIALEFYTPENKKWRQAHMQARYVILQVLLEAGEGLVTIEKTEDEDSKGNILIKLDKEKIQTVGRDAIGMFLKRLQIYKSTADYEQGKTMYDGYSSVDEKFLELRKLVLAKKQPRRMLVQANTNIQGDDVILCEYAASAAGMITSFSERYPSHDAVLEKLWRDEAIYHQYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HJW1</accession>
    <name>A0A7D9HJW1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064462</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001003">
        <property type="protein sequence ID" value="CAB3986345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HJW1"/>
    <dbReference type="OrthoDB" id="10005154at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035234">
        <property type="entry name" value="IgGFc-bd_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46534:SF1">
        <property type="entry name" value="IGGFC-BINDING PROTEIN N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46534">
        <property type="entry name" value="IGGFC_BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17517">
        <property type="entry name" value="IgGFc_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="39849" checksum="A688F4565D618D4C" modified="2020-12-02" version="1">MKKGDFLEYALPRSLRMQGIQNNGIQVSSTMNISVACFNYYTGGDGYLALPTDVLGVTYVVASYTPYDSYARAKIGIVSIHDETTILIQPIKNAVIEIGGTAYTHAGPIHVFLGTLQSIQVTSKSDLSGTMIFASKPVSVVCGVDLGIPGGTGSYDRLESFLLPVTHWGKQYILTTIRSTNKKQGDIFRIFAFENNTVVHSAYWTKVLLSGTYTELILGENLTSFVNCNKPCQVVQYIRGETIGSKNADTSMIVLPSIKQFKSYYSVLCSRTSGFYSSVTITIEEGYTNGLFLNEVNMGYLNWIAIPGTKYVWTVVGMTGTKNATFYHSSSDVNFGLLVYGWNGENSYAFPGGFTFQHYSTGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKG5</accession>
    <name>A0A7D9HKG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A002869</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000653">
        <property type="protein sequence ID" value="CAB3983760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKG5"/>
    <dbReference type="OrthoDB" id="5971045at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.90.10">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029034">
        <property type="entry name" value="Cystine-knot_cytokine"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57501">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5044017277" evidence="3">
        <location>
            <begin position="27"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="230"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="273"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3983760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="33566" checksum="7B035839BCEF3C89" modified="2020-12-02" version="1">MSRFGLHVIVLTALTLISSCLRTGAAQEVIELKNELCNPRSTIIPIDQPSYRHFPYYVTLYRCGGSDGYTSPRYRTCVPATTKDVRIKVRNLDTSEFAEIIEKNHTSCKSACANNKAMCDAEMEAWNEQACRCECRYPDGPPQACPARFKWNRYMCACECNKEEHASQCLAEGKVWSHDKCGCECSPRVITRCKKLNMVLNEQTCRCVLGEVVFGAKTGTGQEKGISKTMLVGIVFGELLLLLFIFDLILYMTKKWGFMYYIKKSVGKAVSKDSHESPPLSPTANHDKSTGNHDTSTYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HT44</accession>
    <name>A0A7D9HT44_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF7587 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062746</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001562">
        <property type="protein sequence ID" value="CAB3989863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HT44"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056009">
        <property type="entry name" value="DUF7587"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24494">
        <property type="entry name" value="DUF7587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7587" evidence="1">
        <location>
            <begin position="47"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="24424" checksum="1B9F84B5EF7F1AED" modified="2020-12-02" version="1">MAQSLEEGLYHLNLMSSTSDYCGMWGLDELYRVCRDDENINPDIVCKANPNDQDSWNRTVEQHINNGSQNSSRFISTTISRDVALKWAYYTMENPSNIEERLTPRRIIKIFISRIPQDTASQMINLTVEEVRNYFLGGATQICRAKSSQEVLFQKYIPFYTWYQGSSQQVFELWQHPPKPPKPKSKNPKNNVYNVLSGKGKSEAKMAAIDVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HW57</accession>
    <name>A0A7D9HW57_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A053348</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002537">
        <property type="protein sequence ID" value="CAB3994780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HW57"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043703030" evidence="3">
        <location>
            <begin position="29"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="151"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="153"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3994780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="19530" checksum="1B25EABC026134CA" modified="2020-12-02" version="1">MSTNIGPIMSRLQFLLFVILLNVLSTSQERLCRYKKSGGYCRMHCCGKPDDKLLCLDSCDGISCSKSDDCDDDGCCNSGKCTNIGCKTPWYVIATPVLVIVLAVCIAAYRIWCVKNRRVSQAGVIVSVVGRDGQLYAHDDSVALLTGDDGVQEQAQGSEQPTAQTTWKEMPDLPPPYVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4C8</accession>
    <name>A0A7D9I4C8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein AAR2 homolog</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">AAR2 splicing factor homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A075442B</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the U5 snRNP complex that is required for spliceosome assembly and for pre-mRNA splicing.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Interacts with PRPF8 (via RNase H homology domain). Component of a U5 snRNP complex that contains PRPF8.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AAR2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002819">
        <property type="protein sequence ID" value="CAB3996193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4C8"/>
    <dbReference type="OrthoDB" id="201752at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000244">
        <property type="term" value="P:spliceosomal tri-snRNP complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13778">
        <property type="entry name" value="Aar2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd13777">
        <property type="entry name" value="Aar2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.550:FF:000001">
        <property type="entry name" value="AAR2 splicing factor homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.34.20:FF:000001">
        <property type="entry name" value="protein AAR2 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.34.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.550">
        <property type="entry name" value="Aar2, C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007946">
        <property type="entry name" value="AAR2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033648">
        <property type="entry name" value="AAR2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038514">
        <property type="entry name" value="AAR2_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033647">
        <property type="entry name" value="Aar2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038516">
        <property type="entry name" value="AAR2_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12689">
        <property type="entry name" value="A1 CISTRON SPLICING FACTOR AAR2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12689:SF4">
        <property type="entry name" value="PROTEIN AAR2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05282">
        <property type="entry name" value="AAR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20981">
        <property type="entry name" value="AAR2_1st"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0747">Spliceosome</keyword>
    <feature type="domain" description="AAR2 N-terminal" evidence="10">
        <location>
            <begin position="12"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="AAR2 C-terminal" evidence="9">
        <location>
            <begin position="182"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00030625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF05282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF20981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3996193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="39891" checksum="5026AA9EBAAA9742" modified="2020-12-02" version="1">MDNEIAKKLFYEGAILVCFDVPEGTEFGIDYNSWNVGPKFKGVKMIPPGFHFVFYAAVGRSGQVAPRTGFFQYFKQKEIVVKKWDPTIEDLVDQVMSDEEMERLRADLENLDQNLGKYPYESLKKWVSLSGHVTESIMTQIEPVCKRISSLTEVTQENLVDGERSKGGGEIRTVACDTTLRFTPLPFRDFPVGASPAQITKLSMDKSQVLEEIMAKSTVKDILGELQLAFITFLVGQVYDAFEQWKNLIRLLCSCVDAVDKHPDVFEAFIGVIHFQLLETPQDFFVDIVSRNNFLVDNLHTFFMTVQDSAVSAKLKRKTQKFKEYLTKRFQWNFDEEPEEDAPVVVETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ID93</accession>
    <name>A0A7D9ID93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079577</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004609">
        <property type="protein sequence ID" value="CAB4003356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ID93"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12364" checksum="26F87E8BC2684DE8" modified="2020-12-02" version="1" fragment="single">MFENHDVLHNDEQMEYGLPGQDQSTSSTSVTKEPKCHDIQNASGNIDQPENPTSIVSDYNKQPAETSSQENVTNAENDEQDCIPTPPSSSIPSDDDPIPTPSLIGPQAVKVAASI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IFM6</accession>
    <name>A0A7D9IFM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044186</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005065">
        <property type="protein sequence ID" value="CAB4004987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IFM6"/>
    <dbReference type="OrthoDB" id="5987559at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10767" checksum="59B3861918FBEBFC" modified="2020-12-02" version="1">MKIIFYELSYDEALNIAGISTLENRREYLSNNLFNDIVLNDDHKLAKLLPSKAGNRELRKERSFEVLPANTNRFGNSFINFYAKKHYKLDVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IFN4</accession>
    <name>A0A7D9IFN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043609</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005531">
        <property type="protein sequence ID" value="CAB4006529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IFN4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="56" mass="6284" checksum="6398A50D39A55075" modified="2020-12-02" version="1" fragment="single">TIDIVTMMVWDNIDFLEETTTDAGSTHMANGIIIQQTRDNEQLPTHCKTSSTAMKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ISF5</accession>
    <name>A0A7D9ISF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">BAI1-associated 3-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A043924</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Late endosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Recycling endosome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the unc-13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007607">
        <property type="protein sequence ID" value="CAB4012711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ISF5"/>
    <dbReference type="OrthoDB" id="7976202at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005770">
        <property type="term" value="C:late endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055037">
        <property type="term" value="C:recycling endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0099503">
        <property type="term" value="C:secretory vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010439">
        <property type="entry name" value="MUN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014770">
        <property type="entry name" value="Munc13_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014772">
        <property type="entry name" value="Munc13_dom-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052095">
        <property type="entry name" value="UNC-13_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45999">
        <property type="entry name" value="UNC-13-4A, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45999:SF4">
        <property type="entry name" value="UNC-13-4A, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06292">
        <property type="entry name" value="MUN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51258">
        <property type="entry name" value="MHD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51259">
        <property type="entry name" value="MHD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0967">Endosome</keyword>
    <keyword evidence="5" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4012711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="522" mass="60073" checksum="491F7FEC931F611C" modified="2020-12-02" version="1">MNILFQSQTSAIISLVSFSELIVADLLTALKFYNNIFKEVGVDYFSLTYLELEKLLGSDMRASVANIDPKKLQVEVGDGDVGTKLFSAFLAAKEIVEYRQYLPLGDSERRELAFDNSHVWFKKFIDHWFQIAHQKALARITKAVEIDQSMVVDSSVKYSTSAVDVTCCFYQLCQFWKRLCWPDATGSYLYVTKLTDDICEAARHYADALEKKLKDNNYYDDNPSYFGVSASLCITLNNLAYTQQWLTELDTHLDWPSIISGMRLAHDERKAKQCEESLQQFSEHAQDVLLVKTDEMIYHIGEKMSVDIKRFVSELVNRDEGVDISEAMDPLLSYLEKSMRTFYSSLVRPVFDRTLLFLWTMVVDNIVATVGGDKGKPPIFYQRLNQVLEVLIDFFCVDGIGIPLDKMMTDTVKVLLEELLLRQLPTDKLIEEYYAEKMKEMMGKEAEFGELALRMFYDLKNEKLHVELLNGRNLPPLDSNGYCDPYVKLSMAPRHLFPTAIVERTNVQKKTLFPLFDAKFQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J099</accession>
    <name>A0A7D9J099_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009949">
        <property type="protein sequence ID" value="CAB4018306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J099"/>
    <dbReference type="OrthoDB" id="432528at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24562" checksum="4542AC50FB21F586" modified="2020-12-02" version="1">MDKMVNEKVEAVREEMKDNNTEVMKEIKDMKENLSKVNKDLDEVKVMMSQMLKKQTAISKTPTEGMFNTPREDILIAAGWGAGYSAEVFSWEKNGWYEFSQMNDGHIGASSFIYNDQLFVVGGCTETIQTLDLNELPLKWMKFSDGLPYESGHQTVVYQQRVIHIGGYNLDEDKESNLISELQLTSLCTLKELYQMPQLRVCHGAVAFENKVLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J1F5</accession>
    <name>A0A7D9J1F5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047493</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010189">
        <property type="protein sequence ID" value="CAB4018837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J1F5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11364" checksum="497A5B89228D1A30" modified="2020-12-02" version="1">MYAKCNLIPVYSDEASSGIFDTWRGWPNFTFLHAFNAMESSKTDSDDNFRCPTEPGPSFQSPESGTHGGKRRGSGRKRKHEEGYENVRTKCDLEDHFLAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J850</accession>
    <name>A0A7D9J850_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TNF receptor-associated factor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030919</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012711">
        <property type="protein sequence ID" value="CAB4023841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J850"/>
    <dbReference type="OrthoDB" id="5984101at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049440">
        <property type="entry name" value="TRAF3/5_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21363">
        <property type="entry name" value="TRAF3_RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17468" checksum="9CC58BA9A9009E5E" modified="2020-12-02" version="1" fragment="single">MPGTKIADEDRKKIDKKFICTSCDMLLCTPMQTQCGHLMCSDCLQTLLESSNPRCPADGAVLEKEQVFRDVFTKRELNALCLHCSNQGCPWHDTYDALEAHSAVCEHALINCVHSQCKMTFQRSHCGEHLKSECEYRNVKCDFCRNDVTLASMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JAT0</accession>
    <name>A0A7D9JAT0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013712">
        <property type="protein sequence ID" value="CAB4025627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JAT0"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="22323" checksum="9D6368D5D1BB62E8" modified="2020-12-02" version="1" fragment="single">MPERSIKVNPNDRPWITSHLKRLILQRQKALALGNIFMFKLLRNKLNRERKRCRKVLYKTKVSNLLDSKPKDWWREVKQLSGQQSTRPDLRSMIRLDVEDSDEDLGNRINEAFISVMKDFSPLPEDFNLSTDNDEPISISETTVERLLRAISVSKASGPDELPNLVLKSFSDILAPAITDIFNASFRECKVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGH5</accession>
    <name>A0A7D9JGH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016066">
        <property type="protein sequence ID" value="CAB4029286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGH5"/>
    <dbReference type="OrthoDB" id="6755555at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="550" mass="61587" checksum="69CE1088A48A93C1" modified="2020-12-02" version="1">MFNPNDLQFHLNNALQRIQQLESASISPINNQSSTNSSGNSGLTVTEELRRSFPSLANLRPNHTSSPTLSCSTNPTTSSTQMLLTRASTSGFGANKKKRKRGSTPKLNIKPKAAHKDLVLVPDPVQTSVPTHSSRVMLESDGYVLHSFPFVRDWDDIHLKKEIEKVFPQIQCCGYEYMKALYGKLVSPNLAPGVRMNCNMLLKLSGQGAVYIRSNVKLASGSDSDHSDNDDFLEPSIAAVKQDPEILEIPSESDIEDHVTVEHTNGITEPFAESTPLIDIFDEQNHDNAHRLTTEAGVIDLNHIVNYPVKAVTVHRTTLKNDMIQLFQDPDTLGSLLMFTVIGFDGSAEKGEGVGVARDVLTSFWQVFVDSLAVGVQEKVPSIRHDHQKMQWVAIVRILIYGYLREKYFPISLSLVFVATCLFEEESLTNHDLLQSFRMYISDDERETFDKCCNGELSPDDEEVLELLKVLKEMYDEKRPSSRKVIKLLKCVPANDAENQCLDHLKRYIKSLQGQSLTRFLQFTTGSDIIVTEQIKVDFVAAQGKPVRLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGU3</accession>
    <name>A0A7D9JGU3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016003">
        <property type="protein sequence ID" value="CAB4029193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGU3"/>
    <dbReference type="OrthoDB" id="412006at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17185" checksum="74161E01E8914841" modified="2020-12-02" version="1" fragment="single">MLSDEQHGFLRGKSCVGQLLSVLDRIGKNLDMGLQTDILYLDIAKAFDTVDHKLLLQKLIHFGVADKVLNWFSNYLSERQQRVLVHGATSDSLPVTSGVPQGSILGPLLFLIYVNDLPSSVSSPSVNVSLFADDTKCFSTIESLSDARNLNTEFKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JP94</accession>
    <name>A0A7D9JP94_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039618</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019643">
        <property type="protein sequence ID" value="CAB4033894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JP94"/>
    <dbReference type="OrthoDB" id="199041at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106370">
        <property type="term" value="F:protein-L-histidine N-pros-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007884">
        <property type="entry name" value="METL9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12890">
        <property type="entry name" value="DREV PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12890:SF0">
        <property type="entry name" value="PROTEIN-L-HISTIDINE N-PROS-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05219">
        <property type="entry name" value="DREV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="266" mass="30752" checksum="9C8F9BFFEC997DFD" modified="2020-12-02" version="1">MKETYFIWPCFLIFIQGAICSTNMFASRYSRTMMGKMLLEHLETKNEPIDHVQWYLCNMSNFDEEVTKLFIQFDLDEESQKFLKNCDEKSNYVFTQMAHNVMKGILGYFMSLTTINGILNRGSMFVFSQAQFRQLMNIDETWKADSLLDLGAGDGQVTKMMESHFNKIYVTEQSPSMRWRLRQMNYEVLEIDDWTMKTYDVISCLNLLDRCDKPLSLLEDICKSLNPHGGRLIIAVVLPFSPCVESGSGKACIFHKGGFSFVLKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRW5</accession>
    <name>A0A7D9JRW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037338</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020385">
        <property type="protein sequence ID" value="CAB4034750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRW5"/>
    <dbReference type="OrthoDB" id="5990136at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="336" mass="38401" checksum="C1CD1DC253B16D52" modified="2020-12-02" version="1">MIVIRDNQTIQTLGFIVKYDLEEDLTQVRKQIQQQLGALVHSDFKFKFFGCSISCLQECNYLLKQCISKTELKGFKYEIFVIKNKSEGKASETVQVLRSNSPVSIGQKPDIETDGFLGFKSKSTSQFENKTLKPETGTESNSPLIRRYSVKELEECYPDELFERERKRFWNQKAEEVENDIALRHWGVQASNGVVDVAWTLKKTELLQLHVQKCETVYTEIMKDNSVLSKSMMGNLDQVERAHAALNCKYNDLCRQMDDGKITQADLDQGLDEKFSVLKKTQANLVKSYQAFISKCTKLSGTGEGSCGYKHEIEDLKHEEMNALVEDVCMDGYISE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8K4</accession>
    <name>A0A7D9K8K4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029250">
        <property type="protein sequence ID" value="CAB4041976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8K4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15065" checksum="07EB73A459BA245C" modified="2020-12-02" version="1">MCYKIFVVLAIVLTFSTMGCALKCYACFYSSNLPVPTSLQYCNNITVDCPTTYCYSVSYTTSKGISAVRRGCDNIPNEKYCPNSGEACQRQRNSGQFNITSCSETCCTTDLCTSATVRVMAAKFILCLMIIVGYFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KH56</accession>
    <name>A0A7D9KH56_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078854</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037827">
        <property type="protein sequence ID" value="CAB4045147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KH56"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="54" mass="5472" checksum="AFB975A3181D2716" modified="2020-12-02" version="1" fragment="single">LAVSIGANVLGILLAIAGITYSAAVWVALNQACFTVGDVCTCINAVYVNSESVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KMQ2</accession>
    <name>A0A7D9KMQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019924</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020049148">
        <property type="protein sequence ID" value="CAB4046284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KMQ2"/>
    <dbReference type="OrthoDB" id="308383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="13034" checksum="F64403EE345EAC70" modified="2020-12-02" version="1" fragment="single">DKVPHSEDKVPKSEDKVPHSEDMVPHTEDEDPRSEDKVPHTEDKVSHPEDKVPHSEDPWFLTLRTRFLTLKTRFLTLRARLLTLRTRLLTVRTRLLTVRTRFFTLKAGSSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KVU5</accession>
    <name>A0A7D9KVU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011335">
        <property type="protein sequence ID" value="CAB4021249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KVU5"/>
    <dbReference type="OrthoDB" id="5984732at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22485" checksum="74D99680AADF1464" modified="2020-12-02" version="1">MVKDYIKSAKNVDIAGKIGAEVLLRTKEVVKKHMWEGGDACAFHVALLYPIVARELTRWNKIATRRMKSSTRSSQPWQICFSRDVPVEEYKVLKLTILTGKYGAVFKSTRNVEYLHLSSREALCLWIGHVISCENRETQKEQDLFKKLLKNGAYCEVIVNKEQPFVIKYSSSMETLKVVMFYGCWKAFGVPQHIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KYG3</accession>
    <name>A0A7D9KYG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012902</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012213">
        <property type="protein sequence ID" value="CAB4022890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KYG3"/>
    <dbReference type="OrthoDB" id="5986575at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="31864" checksum="B4B9196230472EA9" modified="2020-12-02" version="1" fragment="single">MACIRKTTPFCVLFLALYAVFSQVEANECSSDSDCTGLQYCCDRKYPEDNICRYSCIGQSCIFNNDCAPGESCCDSDKKCATTCVGARESCDYSGDCATGESCCGSDKKCATTCVGESCSYNGDCAPGESCCGSDKKCATTCVGARESCDYSGDCATGESCCGSDKKCATTCVGESCSYNDDCAPGESCCGSDKKCATTCVGARESCDYSGDCATGESCCGSDKKCATTCVGKSCSYDGNCATGEYCNSDGKCNTGDCDVIKGLAGWIVAVIVISVIVVIVIPIAVVVFCCFCAAGAAAASRRPAHDGVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8D2</accession>
    <name>A0A7D9L8D2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087474</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015919">
        <property type="protein sequence ID" value="CAB4029063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8D2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="12984" checksum="C75FC2F1BEB3700D" modified="2020-12-02" version="1">MTTTCATNPLKECAAITPQVAGFKVVRVLSLNCLQQADTHHGSLQFELWNAQLSEGCNSGFPHHEATLDRSILIQEPEADHCTEGLNRGVAEDVDLNDGRAAGHRSIESRVFERSQVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LCM2</accession>
    <name>A0A7D9LCM2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024680</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016684">
        <property type="protein sequence ID" value="CAB4030170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LCM2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="121"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19785" checksum="C2D33F70D314F79A" modified="2020-12-02" version="1">MKSAEFTGRCFERSVKGFKASIKKIASIFSSKRIGFLANRLRSFPVPNASNSANQLNNSNSVTQITPNVLNSSTNSVINEIAVVTANRASTSSRTHNELQTISPHHFTSTFSQRNNSGSSSRKRRKNHQHNGKNSKKSNVKCLTRTFICLSDKDQKEVPEREEMRELLVIMALAMLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LMY3</accession>
    <name>A0A7D9LMY3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015154</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020983">
        <property type="protein sequence ID" value="CAB4035370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LMY3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="13721" checksum="D0284F1269889624" modified="2020-12-02" version="1" fragment="single">ESITRNRGHYPAIFWHYLYAWVKLGNPGAQVGGGAGLFGGLAVAFCFALSPVAAIAAGVAGLIAGNLFGGGVYQWYQQQHEIDRQNQRVREYQEFMRQQFGQAVPRAPLYHVPANAMGELVLDVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LR95</accession>
    <name>A0A7D9LR95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064074</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023406">
        <property type="protein sequence ID" value="CAB4037730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LR95"/>
    <dbReference type="OrthoDB" id="6066423at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33244">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33244:SF3">
        <property type="entry name" value="PEPTIDASE A2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="265"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="290"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="34407" checksum="AA39C5C2C118AFC5" modified="2020-12-02" version="1" fragment="single">MSYRDTPLENGYSPAELLFGRKIQTTLPVVSQHLVPTWSYLVAVREKEERIKKRQKKNYDFRNKVKTLQQIEPDCPVWIPDRKESGTIINKFETPRSYVVKTPTTTVQRNRRHLIEDPSKNSREELQEATSTTSGAAVPENNPGYYTRSGRLSAPPDRLLYIVNVSIILLNSSTNTTLPGTTEQFVLNKYREDVGRNYNRITIFIATKTDCINYHLFEIGESLEAESSDNNHDSEDDDDRIIDETVNNAHSSQHDRRLRQAKWKQTTLEEVSGPSTCSTFPITCGDEQRPSTSNTLPSTHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LRB3</accession>
    <name>A0A7D9LRB3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">QRICH1-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060992</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023437">
        <property type="protein sequence ID" value="CAB4037758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LRB3"/>
    <dbReference type="OrthoDB" id="5988622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF13">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="QRICH1-like" evidence="1">
        <location>
            <begin position="34"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21830" checksum="7ADE8924F0E017A6" modified="2020-12-02" version="1" fragment="single">MASSYKKRRFRDPQSVERSIDNVRNAIPQTTRYKNRWGVRIFEDWQSGRENKAVMCESNPFSLDLQNLQNLETELCSMTARTLNFWLIKFVQEVCDKDGKPWPYPGRTVYQIICSLKRHLDKNGRAEANMLNANNHWSTFRRVLDSEMKATHREGESRTRREKEAITDDEEGLLWSKGLLGDKTAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LT13</accession>
    <name>A0A7D9LT13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Proline-rich transmembrane 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A017660</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CD225/Dispanin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024409">
        <property type="protein sequence ID" value="CAB4038626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LT13"/>
    <dbReference type="OrthoDB" id="5989802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051423">
        <property type="entry name" value="CD225/Dispanin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007593">
        <property type="entry name" value="CD225/Dispanin_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14948:SF25">
        <property type="entry name" value="DUF4190 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14948">
        <property type="entry name" value="NG5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04505">
        <property type="entry name" value="CD225"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="170"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4038626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="20833" checksum="D7D16196F020BA8C" modified="2020-12-02" version="1">MASEGAPPPPYNTSYQPNAPPQYPPYPNQPPYPPSAPPSYSATQDQPKAYPVQPGAAPYPQQGIPPGYGQPGYPIQGAAAGYTTQAVGVAYHPHAQTTIITQQPTHGAVIIHNTAPPPDYMVVSIISMFCCFCIGIFAMLKSIRSRELYRAGDHAGAQEMGLRAKKLANVGIFVAICIYVSIVLLRIILSLVLSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LXM1</accession>
    <name>A0A7D9LXM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A013435</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AB hydrolase superfamily. ABHD14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026273">
        <property type="protein sequence ID" value="CAB4040099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LXM1"/>
    <dbReference type="OrthoDB" id="284184at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46197:SF3">
        <property type="entry name" value="AB HYDROLASE-1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46197">
        <property type="entry name" value="PROTEIN ABHD14B-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00037942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4040099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="24988" checksum="0BAE03BCC1E00C57" modified="2020-12-02" version="1">MSAKIYKIWPWRRDIQRPVSVRDFSLKWTDGVVYYREIIPKAGKAKLDVLLLHGMSFTSRNWLELNTMNLLASYGYHVIVLDLPGYGKSSYKLDTTHTSRSEFLWQFIKKTGFDSPVIVSPSMSGIFSLSYIAALKPVKGFVAIAVVGTDKIPVKDYAHFPPTLIVRGSRDRGLGVTSTDILSKNVPDSSVEVINDAGHACYLDKPEEFHAMLLRFLQLSSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MA21</accession>
    <name>A0A7D9MA21_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">IQCH-like ATP-grasp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088266</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034591">
        <property type="protein sequence ID" value="CAB4044331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MA21"/>
    <dbReference type="OrthoDB" id="2117703at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056855">
        <property type="entry name" value="ATP-grasp_IQCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038752">
        <property type="entry name" value="IQCH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14465">
        <property type="entry name" value="IQ DOMAIN-CONTAINING PROTEIN H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14465:SF0">
        <property type="entry name" value="IQ DOMAIN-CONTAINING PROTEIN H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24923">
        <property type="entry name" value="ATP-grasp_IQCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IQCH-like ATP-grasp" evidence="1">
        <location>
            <begin position="1"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="19194" checksum="7A5205FE83A6EA7F" modified="2020-12-02" version="1" fragment="single">MDNEFGGRGTAYCDVTPYLSCYAAAWKECQRYGEKWSKKWAHEPMLIKIAAEIPTILAQHGSPVSKEGYTTWEKFLEVFLQRGGIIEACPPSDSVIAITVDMLIEPDGNLSVLSTSDQIHATSAYQCWGNSVPQASVDPSLLVEKAIAIAIACRQRDIIGYISIDFVTFIDPET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FJ47</accession>
    <name>A0A6S7FJ47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062179</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000220">
        <property type="protein sequence ID" value="CAB3979704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FJ47"/>
    <dbReference type="OrthoDB" id="6782145at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13597" checksum="8AC62EE30852D4E9" modified="2020-12-02" version="1">MDGLQPCNHEEADSRIFLHVHDAALQHHHVLIRSVDTDVFILAVAQMQRIPDKELWLAFGTGKQFRQHILHAAYQGGHVWSQVHMALPQLPSPSEWGWKKDKLWRPVWTTLPQAQQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPU5</accession>
    <name>A0A6S7FPU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059470</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000444">
        <property type="protein sequence ID" value="CAB3981914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPU5"/>
    <dbReference type="OrthoDB" id="5984802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18429" checksum="C660E938FA64721A" modified="2020-12-02" version="1">MKRQQIEENRQILRPIVGAIVLCGRQNISLQGHRDDSSIYLSDDVDCGNFICMEQYAQGRTLEEFFKSTSKNLTYKSKTIQNEIIDICGNLNTKKITDEICKARGLSGDAIATTIKDFLHDQNLPVDNCRNQGYDGAGNMAGRLSGAAARIQEINKKALYVHCNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWC4</accession>
    <name>A0A6S7FWC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056388</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000258">
        <property type="protein sequence ID" value="CAB3980116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWC4"/>
    <dbReference type="OrthoDB" id="5952813at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12999" checksum="E7EBB91B9D273352" modified="2020-12-02" version="1">MAEYLEQNIEDVKNYVQKNYTYRQISDILKQHFPEVSRGFSERNIRLFCLKRGIRKVDNFEVDTIIQQSISEVLCAVTDYHKQIRIRIALGNIAKAKELNIHNIITETEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXP3</accession>
    <name>A0A6S7FXP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000349">
        <property type="protein sequence ID" value="CAB3981069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXP3"/>
    <dbReference type="OrthoDB" id="7698353at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="505" mass="57287" checksum="A749D020B0CDB798" modified="2020-12-02" version="1">MPANKSPAADKIPMKLFHDCLSNISSPLTDIINQSFETSVFPEDWKYTVVVPHLKEGDHEDARNNRPISLSQSASKICERIALNQFMNYLDANDLLTNHQSGNKKYNSTETLNIHVTDFILKAMDKKQMTVLVLLDLSKAYDSINHDLLFGKLRSLGVSPSALRWFYSYLTGRRQAVRIGSTLSSKLPIKNGVPQGSILGPILFSLYINDLPTVAQHCNIESYVDDSKLFLAFSLNELDDAVTKVNRDLKLTFEWCCTNYLLINPTKTKVMVFGVPQLVSKLPQDITFTLMDKQLTISSNAKDLGVTLDPYLNYNDHVANVVSSCMSALVQINRVRHLFKREVLIKIINCLVFSKLYYCSSVWASTSETNIGKLQCVQNFAARIVTGTKKFEHITPILKDLKWLPVAMELYIRDAVMTFKCVNDLAPSYLCGKLNKRQQISGRITRQSNDFQIPKCRTATGQKSFEYRSVSIWNSLSPTAKQLSSIKHFKHYLKKHFLNIFLKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZF7</accession>
    <name>A0A6S7FZF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000423">
        <property type="protein sequence ID" value="CAB3981729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZF7"/>
    <dbReference type="OrthoDB" id="10538336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12371" checksum="2D28C40AEDC013BC" modified="2020-12-02" version="1">MLWHVFQGCGHSFHIQCTLPDISVCQICKDLLTTKVSSFGKTAKEAVHHFDPSAVQESVANSSDEDEDSNSEMQDQDADDEELVQTTNTQTVPELFNKVNAWRRFEGPQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0V4</accession>
    <name>A0A6S7G0V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-I Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000480">
        <property type="protein sequence ID" value="CAB3982232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0V4"/>
    <dbReference type="OrthoDB" id="5983179at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="161"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25203" checksum="ED003CD7EE4ABBDB" modified="2020-12-02" version="1">MTKNGIKHALVPPYHPQSNGAAERSVRVVKEALAKQVIQGTQGVSMKHRLANFLLRYRTTPHSTTGVSPGELMMTRRLRTRLSLVKPDLAQVVEGKQEQQKVYKDGKGKSERTFEKEERVRVLNTRATNKTNKWILGTVVKSCGPRTYVVKCGKRMRRVHPDHMIKAHDGRENGSDDLKDDDDEPEVSISESGEQTVADDNGEIATKMLLPSRKIFGDVGESESQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0X7</accession>
    <name>A0A6S7G0X7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000430">
        <property type="protein sequence ID" value="CAB3981806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0X7"/>
    <dbReference type="OrthoDB" id="7700509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29410" checksum="787D2C71841C010B" modified="2020-12-02" version="1" fragment="single">MRLAQIVYIPPQNSSREIRLNTDHFENLQNYIHKFSALGDVILCGDFNARTGTLDDFTHVDPFLNEGNLSTITVSKRFSRDPNTNCYGRSLIELCIENNLVALNGRTKGDLTGQFTCNTYNGSSVVDYAIVAQELFPLINSFTVDYPTEFSHHSCLNFVMRIKTPKYPNVNMEVLNKPISFVWDETKKQDLYDVMSSEDTVNKLESLFCEQNDADSSLVDIDVIVNNFSEILCESSLKILKRKKQINKNKNKKQRQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G103</accession>
    <name>A0A6S7G103_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071528</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001024">
        <property type="protein sequence ID" value="CAB3986504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G103"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="25503" checksum="8ED88F249C34DD6F" modified="2020-12-02" version="1" fragment="single">MDKRMLPTGESTNLNRIKNFGANNLFILKRNEITDPIVCLKMCAVMVSRSIVITRNTCMQQPLAYIFQTLNMKYSHILRSVMTTHSTPLKTSLEFKIHNRDQETQTKPETIGIESCEQHIKRLEKFRSQKGYRFYLYVTVEITLLAPVSCCHIPFLTRNHVLTYAHPYHNLSEFQHFQRTLIRRINKNLDGSGTFIPVMMLRKPACAFKGTHEPLLDDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G1V5</accession>
    <name>A0A6S7G1V5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079323</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000541">
        <property type="protein sequence ID" value="CAB3982789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G1V5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="24651" checksum="FF9D6EB22AE2A136" modified="2020-12-02" version="1">MESGNCDSPSDTSIIDQQDDKNLDDGDDDCVSLTSSETPSSIFDKGDGQSITKTTKEPIKIKPNQKRQTDEEFKLIKGLTESNAEKRNKRRTSENQSAGPDDAFGHYIIQTLSKLDTNVKYLAQYINNSLFQPQTGELTKNHSMGTRAPIPAQHQAFPPVYPQYNMLPFSNEMKSAFNPNAQATGNMLSTPNQLPMATDSNYGQDHAMWFNSNPMQGGSFEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBC8</accession>
    <name>A0A6S7GBC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055096</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000537">
        <property type="protein sequence ID" value="CAB3982740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBC8"/>
    <dbReference type="OrthoDB" id="308383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9978" checksum="57AB8A3CBCA352BA" modified="2020-12-02" version="1" fragment="single">VPHSENKVPYSENKVAHSEDKVPHPEGKVPHTEDKFLHSEHKVLHSEDKVPRSEDKVPSSEGRFLRLRTRFLALRTRFLTLKSGSSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDE9</accession>
    <name>A0A6S7GDE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ATP-binding cassette sub-family D member 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A038754</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Peroxisome membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCD family. Peroxisomal fatty acyl CoA transporter (TC 3.A.1.203) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001053">
        <property type="protein sequence ID" value="CAB3986666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDE9"/>
    <dbReference type="OrthoDB" id="422637at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005778">
        <property type="term" value="C:peroxisomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005324">
        <property type="term" value="F:long-chain fatty acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015910">
        <property type="term" value="P:long-chain fatty acid import into peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007031">
        <property type="term" value="P:peroxisome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042760">
        <property type="term" value="P:very long-chain fatty acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03223">
        <property type="entry name" value="ABCD_peroxisomal_ALDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000636">
        <property type="entry name" value="ATP-binding cassette sub-family D member 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050835">
        <property type="entry name" value="ABC_transporter_sub-D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11384:SF62">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11384">
        <property type="entry name" value="ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06472">
        <property type="entry name" value="ABC_membrane_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004585"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3986666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="682" mass="77777" checksum="8AD9CA4107FBB9A4" modified="2020-12-02" version="1">MVAFSKLQQRLTEAISANNYGIAVVGAATVAFFFWSKSRLEEKERKLRQKNAKEHTAVSLEAEHKEGKKSKVKSRAAVDKKFFRNLFQLIKIVIPGWLTPETGLLLLVAASLLTRTYCDLWMIQNTTSVERSIIGRDFQGFKKNILAFVYRMPLLSIVNNVLKFGLSELELRFRTRLTQHLLSKYLSNFVYYKISNLDTRISNPDQLLTQDVEKFCSGLVELYSNLSKPILDIILYVYRLAGAIGAQGPLAMLGYLSISGFILTRLRRPAGRMTVEEQHLEGEYRYVNSRLLTNSEEIAFYQGDSREKLIINHAFQRLVNHLRTFIQFRITMGFFDSIVAKYIGLVVGFSVVSIPFLNLANPKYINSSYSDRLQDYYVSGRMMVKMGEAVGRVALAGRELTRLAGFTERVKEIIDVLKDLNRGVYKRTMVSSRKEGDEAEVDSSLKIDTDCPSGTVIECDHVIRFENVPLVTPNGDVLVRELNFQVKSGMNVLVCGPNGCGKSSLFRILGELWPLFGGKLVKPHKSKLFYVPQRPYLAIGTLRDQVIYPDSLEQQQEKGISDEKLEEFLKQVHLEYILEREGGWDAVQDWMDVLSGGEKQRIAMARLFYHRPQFAILDECTSAVSVDVEGFIYSHCREIGITLFTVSHRKSLWKHHEFVLYLDGRGAYEFKKIDPSVEEFGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GF27</accession>
    <name>A0A6S7GF27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endoplasmic reticulum resident 44</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001555">
        <property type="protein sequence ID" value="CAB3989813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GF27"/>
    <dbReference type="OrthoDB" id="294696at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005793">
        <property type="term" value="C:endoplasmic reticulum-Golgi intermediate compartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003756">
        <property type="term" value="F:protein disulfide isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052643">
        <property type="entry name" value="ERP44"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46295">
        <property type="entry name" value="ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46295:SF1">
        <property type="entry name" value="ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="24017" checksum="D9287573677B3754" modified="2020-12-02" version="1" fragment="single">MLLRLQCVLCVLATTRLFLRTVCDASVVDLTHNNVDAELGKAKVTFVNFYADWCRFSQMLKPTFEQTANILKEEFPNDLVLARIDCENQQDVCQRYSVSKYPTLKIFRNGQVTKREFRGQRTVDGLSKFCRDQLTDRIHEFHASQDLNIEQSKRNVIGYFDSKESENYKAFEKLADQMRDDCEFHVGFGDASAKERENGDKVVFKTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GID3</accession>
    <name>A0A6S7GID3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062424</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001789">
        <property type="protein sequence ID" value="CAB3991093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GID3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="24337" checksum="CC1FA04CD5660A72" modified="2020-12-02" version="1">MEWLQMATPEEIAHVGKRVNTVEELEAAVRKHAESRIKRKHTYDPICSECGSKSIVMIDGADTCTQCGASDMNNFSYYVSYDYNKDDYLKKKSCHNRVRWFERHLFEHVASRDRDIIREQQFRSIVRCIQRLRLQRGRNIVRYKFYLLRIASMNGISLRNPPEDIKTQRIVDILEDRLYGKVFVELGWKPEKCEYYNNWKSKNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLC7</accession>
    <name>A0A6S7GLC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A011152</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001672">
        <property type="protein sequence ID" value="CAB3990499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLC7"/>
    <dbReference type="OrthoDB" id="431720at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005891">
        <property type="term" value="C:voltage-gated calcium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008331">
        <property type="term" value="F:high voltage-gated calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098703">
        <property type="term" value="P:calcium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014873">
        <property type="entry name" value="VDCC_a1su_IQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050599">
        <property type="entry name" value="VDCC_alpha-1_subunit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45628">
        <property type="entry name" value="VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45628:SF7">
        <property type="entry name" value="VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08763">
        <property type="entry name" value="Ca_chan_IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01062">
        <property type="entry name" value="Ca_chan_IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0407">Ion channel</keyword>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <keyword evidence="2" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="123"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="231"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="401"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="551"/>
            <end position="739"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="141"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="171"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="231"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="421"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="501"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="579"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="610"/>
            <end position="620"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="627"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="663"/>
            <end position="678"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="681"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="714"/>
            <end position="730"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3990499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="786" mass="89093" checksum="25B719A9F64D296B" modified="2020-12-02" version="1">MNMPLDENETIQFTTTLFALVRTSLQIRMTGNMNANDTKLRKMITQDWPNIMPRVLDKMIPKQSVLSCHQMTVGKIYCAKLMVENYRQNKRRKQFDILDDDEFRRQRPESIFKRLVGSMTRSMRQRRASSINGLVPSEETPDGRDKAYLRQHSESLTMEDLKRSSSCHNFSSEKAKRRQELNSSPLIKHAVRPTLSASSLPQTSHRKHKISTAMSLPLTTVFNEDKDERLNHVPGSSKHEETAKVHISSTHTSRNRYKPKLKQTPSIVINSPPSSERRAVNHADIYVEESLTQGKNVGEFMPDRDGRISPFSKESGNKETPRVLQQQNKDLSMQFIPNKGRESYFPSEKQENLYEYEIYADNVNRKSPNQMNLTENYRGLQRHGAHGLGTRNVDIGARNVDTGARNISPGARIVSPGARNVDPRTRKLSAEARNLSPGARNVEQSSSSDEERGNKTNSQGVRMSPSIFSERIDNPEGFQRPRPKYISQDGTDGSSLYRVRNNVSPGQNSTNKQTSRQIPRQSQSESNLKSKGMPDRTLYPVVKTFSDPVSIQASQTRIEPRDSKFSSETSLVANNAFGMEKKSPESALDRNERQSPRTRGNSPFSRRRGNKDLEIDREQDTSPLVSRELDRQGYEDKHNRATFQADRSKGQPKTGFNEAPLEMGKHPYEAKRTKDGLLADRNTQNRETLPSEKSSNRGRTNNSFQADKGTSEVSAHKDTNIGETQAERPQSEIFGGLLGETDTSHSAEYYDRMISKINEQINLAVSRNKSPYALYGLGSDDDDDWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GPM5</accession>
    <name>A0A6S7GPM5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF1758 domain containing, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002287">
        <property type="protein sequence ID" value="CAB3993575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GPM5"/>
    <dbReference type="OrthoDB" id="10066767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="223"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="29904" checksum="48DE4CDB780FD0A0" modified="2020-12-02" version="1">MDLIRDVKQVKTVEDIRQFSRRLNTCVVTLKNRRRYDELEAGMLYSVVKSKLSPSLLETYYAWLDYQHHRSTLEALRDWLLVYSRHKVHAQEDVEGVLKNDRERRPNRRNNTYALAQNNRKTTSICFKCNKKHYISNCYRFKSMSLKARWEFVREKKLCSKCLNSGHQSVKCDKDETCPISECHSRHHPLLHRYQPKARGKDNVEQSTTTEQQNEEQRQIQNDLSKTNSPPQESTPSTSISNHVTDDGSQFIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQ53</accession>
    <name>A0A6S7GQ53_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014220</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002325">
        <property type="protein sequence ID" value="CAB3993765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQ53"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="entry name" value="Serralysin-like metalloprotease, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="beta-Roll"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="26086" checksum="C0F09862B2CB4A61" modified="2020-12-02" version="1">MKAFHEKIKVKRDGEDIGVFDDDSEICFNKKNSVVAEKNRHILFSSNDHIVFMFAEYQIGFSKVPLMLDFNAANKSVCVDLSQKKNNKLQKKMTTFKAITTVSDSPYDDVTTGNGQPIFFSYSGGFDRLHGGKVSDTYVVKRTCKRCVINNYDSDEKSDLHFIEETFTNLKATKSKENLVTSDYLCEGATGSSIDGKECDDNVIGGPSDDILSCGLGNDVINGGNGSIYGGNGMDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUF9</accession>
    <name>A0A6S7GUF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001289">
        <property type="protein sequence ID" value="CAB3988170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUF9"/>
    <dbReference type="OrthoDB" id="6510667at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20931" checksum="A0D698DB9A0B7266" modified="2020-12-02" version="1">MSYWRSKERRRLLGIAGYEVLLCAPTEALADKLLQVIGQKYSINTNKAHLQNEVMLAQDGDGCWIRINQNARTEILGLLKKALYATSEDMFEESFDELLDEMEETYPQAFKYFEGLYMEKKEFALCFGTSLPVRGNQTNNFVESQFLVTTGVVSWGKQKHKGDGAQVFKVHQKLGVSKWNFPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H095</accession>
    <name>A0A6S7H095_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon opus</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A014572</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003059">
        <property type="protein sequence ID" value="CAB3997255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H095"/>
    <dbReference type="OrthoDB" id="10066365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="212"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="234"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="278"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="257"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3997255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="33963" checksum="F09BEB74C0C47A41" modified="2020-12-02" version="1" fragment="single">MAKVLDLPKLQPFTLGETSTISQRWRKWIKSFEYYIAASGINDKKQQRAIFLHLAGPEVQDIFETLEDTGNDLDTAIAKLTSYFEPQKNIPFERHNFRQTTQLQGETIEQLAIRLKHQVKFCEYGNPNDMIRDQIIEHCSSSRLRRRLLREPELILEKTVEIGRSFEASERQASQIEADSLKTTDLGVNAIRSKAASSRYPTSIQTGRSNIVCYCCGNAGHRAKDPRCPAEGMSCNKCHKLGHFARVCRQLKPTNKPEFQNPTSKNKNEIYKQNTGSHGEIRYVYGAPHPATGESSSDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2D0</accession>
    <name>A0A6S7H2D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060972</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002941">
        <property type="protein sequence ID" value="CAB3996766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2D0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15788" checksum="2F9E236E23891E0D" modified="2020-12-02" version="1">MNVDVSLEQDERVSNLTENSKQIDDRNAWNKIDLSKMVRKGTAMKTLRNELRIQKSPVLPFSTSSPPENDLKDIDKRETFASLTTQHLRNRREIDSKSEYTQEDLLLCNNSIINIKYDDEYKVQTDFSDELFNTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H468</accession>
    <name>A0A6S7H468_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003846">
        <property type="protein sequence ID" value="CAB4000475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H468"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11529" checksum="3CF7A5CD0C1F889B" modified="2020-12-02" version="1">MSSEMEEELKKMHHKYKSLEEKNSMLIGKLAAFNKSIESRVNDVRIESNSPASEADIPTSNKFLSLSDESIIGEPTHKSPSKQQSVPLDQNNARNEADTILNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4G2</accession>
    <name>A0A6S7H4G2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003133">
        <property type="protein sequence ID" value="CAB3997566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4G2"/>
    <dbReference type="OrthoDB" id="7872928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="33982" checksum="46A35C4DB25F9FDD" modified="2020-12-02" version="1">MRDIANEAFSNPKCFWSYYSFKNKSKPVPDKIKYKGVSISDDLERAEAFNDYFKSIYKDHTCCSPPDLCPVNSNINELLELIQVTPEDVFPLLFNLDVSKATGPDKLPAIILKMCAESLSPSLSVFINASLRTGLCLSEWKQAYISPVHKNCARDEVENFRQISLLPIVSKIQEKCIALKLVPHVSEILHPVQYGFQQGLSCANQLVEIFHTIGLNLDKGLDSDIVYLDFTKALDSVCHARLLWKLQHLGVSGPLLLWFKNYLTRRKQRVVINGTQSSWIEVKSGVPQGSILGPVLFFIYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H539</accession>
    <name>A0A6S7H539_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007768</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003573">
        <property type="protein sequence ID" value="CAB3999369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H539"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13257" checksum="FFFC01AD49E2C0A1" modified="2020-12-02" version="1">MLLEELKRKSQGDAIRNLKSDAEAFKGDTETRNVYNMVMALIATGADVNLADYDQLTPLTIPWTMLKTSHDYSEMFPCKFTVRVVGRWCQDACLTYLGDVRAEDLAYFSFRKCNIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXL9</accession>
    <name>A0A6S7HXL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A011470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003608">
        <property type="protein sequence ID" value="CAB3999521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXL9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="188"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="3"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="188"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25296" checksum="259126E7B0088567" modified="2020-12-02" version="1">MATAKLRKENQQLREEIEELQGNLKQITADISKKNESLIEQDGRHASQSTESTADKDKSLEYISAQNDDLILFKNNTMKELKHINQQVNIISKKCEAIANAVEQIEDYSYQYNIKITGMPQQNPNESAEETTSMCLKLFTAIGADVSIYDVDIAHRVPARRQSNRSNAIICKFVRRLAKEKVIAARKQTSNVQPEQLHLPSTTDEIRQPSDLPTFNPTPARAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZ45</accession>
    <name>A0A6S7HZ45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019392</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006223">
        <property type="protein sequence ID" value="CAB4008770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZ45"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="311" mass="34708" checksum="F16E4D0972FF230F" modified="2020-12-02" version="1" fragment="single">MPPSSATGFLNHPDQSNLPSRPIATNPNEIADFFNTYFASVFTSENLTVQHPNRTDPVLTELKVTELEVETLLNSLDTNKATGSDEIPARLLKETASIITPSICKLFNKSLQQGTVPQDWKLANVVPVYKKGDKEYTENYRPISLLPILSKVLERYIFMNIRQHFSGIIYDHQHGFLQGKSCVTNLLEALDYIGACLDKGGQVDMVYLDMSKAFDRINHKRLTQKLANSGIGGNLLKWFQSYLTDRRQRVTVLRVTSKSLPVCSGVPQGSILGPTLFLLYVNDLLEASTSSRAAMFADDTKIFSAIQSQND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZ81</accession>
    <name>A0A6S7HZ81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003603">
        <property type="protein sequence ID" value="CAB3999502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZ81"/>
    <dbReference type="OrthoDB" id="429851at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="42325" checksum="B98E3CE4B7137983" modified="2020-12-02" version="1">MTEGQERTGQDAIYEQNMQIEDIQSDETANKEELQADTESAVPEVQISEEIKELRICRLFVTWPKLFFGLTLGGHCLAIFTSTILYIAGYDILPIDFSAVPLNLEDDPTKLRADAWKFASESDAVTLSSSAVSGSAQRIVRYQGLELVYESQEKNMLTKTTLKRIQTLENELQNNKIWNEKLCMLGPTQTCRKPTSILRFFDGTYQSLHEDLFDPNFDNILHVLVTAQSLNTTRSTLAYHLGKDAAIDNLTQTAQSKYTRSLMNIAWPLDGFNSTLNQKEEQTEKSDSLTIDAFADKLKRTYTKGLPGIKFYYYNRAIYVNEIQLQFPLTAARRIDLRNLLGFARRRKLFLGRAISTMRRPHPRTLHKNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I460</accession>
    <name>A0A6S7I460_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A003440</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007527">
        <property type="protein sequence ID" value="CAB4012486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I460"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="68"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4012486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13083" checksum="FDB74D80DF8AC36B" modified="2020-12-02" version="1">MEDKPEQTQVPTTSVAATQGTRVQVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAEPKESSNNDSMITYIGVAIALASLVLAYKSHQGETRKPEPQHTPETVKVTRKVDESKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4K0</accession>
    <name>A0A6S7I4K0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cadherin EGF LAG seven-pass G-type receptor 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A030950</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003602">
        <property type="protein sequence ID" value="CAB3999498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4K0"/>
    <dbReference type="OrthoDB" id="5959886at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15039">
        <property type="entry name" value="7tmB3_Methuselah-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001212">
        <property type="entry name" value="Somatomedin_B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00524">
        <property type="entry name" value="SMB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50958">
        <property type="entry name" value="SMB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3999498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="923" mass="106215" checksum="70D2327DBD78FA88" modified="2020-12-02" version="1">MANMDLPKAILCKSFLGLLLLVTYVFVSCTSKPHNPSMTLNRINLTDKSGWLHHERVRRYSSFTGTCDDSRCTGNDTEYKTYFDCYCDEACYKIFSDCCPDYEKQCGRQKFLETKTTMWKCVSNYWSKSRIKEVNGVWMITKCAADWPFGELRTRCENAPSEFSYLVEDIIPVEGANSLTYRNQYCALCNRVKHYTPWDVHVSTNVTPPEDFDLNARLRFIKENGGSILPVPSRSQPRRYCYGRENYADNCSLTNTSYYEACVQGSIEVVGRGHYFKNRACAICNGYHGIDSFDGALNPAHTDYPEAFYMVFSLSRKATRIKKITKVLNECPRGTVYDPYLMFCRIISYIFRRGEKKNEFLILLWFTKSGEKTVNSSKLENELVSALISRLSLQDDQISQITFHKQSRNLRRNVPLVATFRLTLTPCQSLLVHNNQHRSILNYKNHNTAFLKLLNFKRSFTLSWKEICFFVIKVTSKRLSNYVYDKKKLQCEYEIKNKNESVGVNDTRKTFSPENCISVEEHDENESVNATQKAFTPFTPSVKKYTTLYPKLGFPNCRDGAFVPLRPAEYVIFPNLTVYHNATGSVFNFGEYLMSENKGTRNTSNITQNSLLSSDSMIIVCLPFKNTFNKTEIKYSTNTTSYALRTLTLIGFTVSSICLILLLITYGLFQQLRTVPGMNLMNLSLSMLLSHLIWLIGTSHFTGTKTCTVLAILEHYIFHVSFLAMSVISYHSCYVFSQPFAGRVANKSWRRFIKYSAFVWLAPAIFVAICVTLDKTETFLVDYGTNCWLGNVNAKLYLFLLPLAVLLLFNIVTFIRTALSLYRHDKERPQTFQRQERKQNLLICAKLATLVGFPWLIAFIGVLFPNVEAFQYLFVIFVCLQGLYIGMAFLFNRKTLKLYKDRWNIGSRGNAPSYTPAQTFEMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6N3</accession>
    <name>A0A6S7I6N3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008288">
        <property type="protein sequence ID" value="CAB4014405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6N3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12513" checksum="65A0F905FB0EB46E" modified="2020-12-02" version="1">MKSFPRKNPDEVHHKNGININQLINLTGSNESMANLVKLNTFAERTPELTAELFEPLMEREHLEAHDYCASAYVRHLRQFDNVYRIDFLKLPIKSIKKSNRFRCRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I7G9</accession>
    <name>A0A6S7I7G9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A055326</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007738">
        <property type="protein sequence ID" value="CAB4013067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I7G9"/>
    <dbReference type="OrthoDB" id="10068969at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="330"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="224"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="17"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="51"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="69"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="334"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="351"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="381" mass="43010" checksum="407A47BA94A6ADFD" modified="2020-12-02" version="1">MADKPTVDNPEVGTLDTFLSQNTAENTVENTGQNEINSTKPDKASPETDENTLSVSTNDPSSRPKRSVKPTEKSIENRVQSDHSKLDKFWRNTSTAVGKLQETPDSLNQIKSHTSEVRSLFHEYHTVSLSLLEFLANLSDPKHQKEYETLQKLVNNRSEYIHTVINEANERKKELLLEINSAHHSRISRSSRSSTTSSTAARALARAEATAALKKVEMQKWRSLRESQSAIEIQQQELALAQKKMEEKSRMESLLLEEEAAVTVAKAQAIDKELSLVDHQDPEHFDLPQDDPAERVQNYINSQRFEESNIGQDSSPLVPNHVIGLQLPQNTNHPIREKPPNRRLDPAANSFIPQPQNSRTDPSTNAISSYIQFMATQRAYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IA16</accession>
    <name>A0A6S7IA16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ankyrin repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A035205</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008812">
        <property type="protein sequence ID" value="CAB4015705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IA16"/>
    <dbReference type="OrthoDB" id="5406014at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070531">
        <property type="term" value="C:BRCA1-A complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031436">
        <property type="term" value="C:BRCA1-BARD1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0085020">
        <property type="term" value="P:protein K6-linked ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171:SF8">
        <property type="entry name" value="BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="14934" checksum="C0E3EDD6FA8450D3" modified="2020-12-02" version="1">MVDVCLKHGAKPSNRGGPGVSGLMLACEKLNDLFMYPPVVEQMVSLLLEHGAEVNQQDFYGRTALHYAFKCIHDNHLFLLKNLAQKQRIVKILIQHNANIYLRDSSGLSAIDMAKREEHESWLKTDEASLTGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IER7</accession>
    <name>A0A6S7IER7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004363</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004969">
        <property type="protein sequence ID" value="CAB4004681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IER7"/>
    <dbReference type="OrthoDB" id="5989338at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006928">
        <property type="entry name" value="Herpes_teg_USP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04843">
        <property type="entry name" value="Herpes_teg_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase C76" evidence="1">
        <location>
            <begin position="354"/>
            <end position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="962" mass="110096" checksum="49904352FDDBE0E0" modified="2020-12-02" version="1">MCTVRTKYVLFENTLTSHEPVHIHGEAYTKDTEQFRTGSMIHDSKSTFGYFSCQISCQKSCQKSSQKCCTQSYQKFDTNTTKMTTDTQTNLLQKTNCTEHMASRNDVVRVPLKKVSKFVNKNNVQSNVPRDENTAGNYSFYNNISKSSMNKVNKETPQSKIMKVMSVKKLPVRSRHTLFNIACSQQHINDTTQLNTGCRLCHRDREPSRIQVKWLTRKLGKSRLLRKDLKHTIKKSVPRSSQLHYIVRNVHRHSQNSWIKCIPDIHCPGKAKKTNRTKCLAKHLKFNIPEGILADIFYLSDFTSDLHTQQVYKNVNHMKNVCQSALSTDIETNPGPVFYINPNKTISAPYSQGNQIIFGETAGQQCLAMCLCALIYNKRHNIGSPQDLVQIMDIGNELYSNLSCLARQSILLFTELPSQLTVFDTDYHLEYSESYSGRVIGDSFIEGFQYCVPFHEAFDLLLVENYSAFILIIDCNAVCIFSTNDSKYNIFDSHSKDIYGRSHPQGTCVLLEAATINHVILHFQSLYSENSQFELRAVNIEELQSTTDQNLNNNIGNTYLSGNASQEIKTTDAFCLCRQCCAISLYSICYSVIKPCNYWDSNTISAVVYFGTNLYNNTDINTWSSSDLPQKIKICGTDVHIQLQANYQGVVNDIAESKLNIASVICHCDENTGFLIWLGGYCISCIFHATLKRKSYSILAYDEDPSPPTIYFGTNLYNNTDINTWSSSDLPQKIKICGTDVHIQLQANYQGVVNDIAESKLNIASVICHCDENTGFLIWLGGYCISCIFHATLKRKSYSILAYDEDPSPPTTHYIKNIEDKHTLVEAIFNLANTKVKDEIVNYEIQFLSCSSKLSNCERKKIMKKHRQNYINVFNEIIEPALQKQKLEKRQMKYKALDPAKKEKVLNEQLNYKRTMGEEQKQKLLENQREKYKALDQSKKEELLKKICVIRKQWEKIKNRNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IEW7</accession>
    <name>A0A6S7IEW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008789">
        <property type="protein sequence ID" value="CAB4015633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IEW7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.130">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="13695" checksum="8B6C0B7D7B149A1F" modified="2020-12-02" version="1" fragment="single">MKYKIAIFFLFGVFMVETKVVRDQNKFTKAKLENGYDPGKCNQSNHARFIVVKDRENNDRLLICAEENDVYNWKTTDGSDPTGEFFNPAYDCLKILDKNPEAKDGFYWIKLSGIVPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQ71</accession>
    <name>A0A6S7IQ71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042649</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011403">
        <property type="protein sequence ID" value="CAB4021375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQ71"/>
    <dbReference type="OrthoDB" id="5986312at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="25"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="27189" checksum="75EA9F040DFDD8E0" modified="2020-12-02" version="1" fragment="single">MSAVQLPPRKIPESLREHLDELVKLEVIERVDYPTDWVSAIVVAPKPNGKIRLCLDPRPLNKALKRCHHPIPTIDDVLPELSNAKVFTKVDCSNGYWQVELDKESSLLTTFNTPFGRFKWQRMPFGISPAGEIFQQRLDQAIEDLDGVRTVADDILVIGNGETMQEAVADHDRKLKELFDRCRAKHIKLNPNKIELKKTSMPYIGHILTSDGVQADPAKVQAILEMKQPTDVAGVRRILGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRL9</accession>
    <name>A0A6S7IRL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005760</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006079">
        <property type="protein sequence ID" value="CAB4008292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRL9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15311" checksum="DBB3B0B8A1FDBEA2" modified="2020-12-02" version="1">MSSGFVVLKSILNRSHCSPGLNLALTTSGGKPALGGQKNEDVARLELCNPGGKKSYRHFRISDFVHVSTKPGLVARVRKPEDIVLSDFHPMQNPAGKIQKCKKLFMDIKLVKDVYPVHECSVQNSTKPEVHDMEDASIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVF8</accession>
    <name>A0A6S7IVF8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DDE Tnp4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A063402</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011273">
        <property type="protein sequence ID" value="CAB4021110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVF8"/>
    <dbReference type="OrthoDB" id="5945618at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE Tnp4" evidence="3">
        <location>
            <begin position="175"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4021110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="41198" checksum="60723007DCB373BB" modified="2020-12-02" version="1">MPSFQEVCDALIIALADEIISEEEFVVLFAQYKPQNPEFPYWTYDGFDFENLDPQECKAEFRFEKHDLPILKQSLRIPDRFVCPQGTVCSGMESLCILLKRLNYPCRYLDMIHSFGRPVPELCMITNTVLDWVYTTHGYRLTSWNQPFLSRECLESYAIAIARKGAPLRNCFGFVDGTVRQICRPGKNQRVVYNGHKRVHALKFQAVALPNGIVANLFGPVEGRRHDAGMLKDSSVLAALQQVAYNPAGDVLCIYGDPAYPLRPQLMCPYKVGDVQVLTPQIRAFNKAMSEVRVSVEWLFGDISNYFKFIDYKKNLKIHLSAVGKQYLVSALMRNILTCFYGNMTSDYFDIAPPTVDEYLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7A4</accession>
    <name>A0A6S7J7A4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Epidermal growth factor receptor kinase substrate 8 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A026019</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013294">
        <property type="protein sequence ID" value="CAB4024900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7A4"/>
    <dbReference type="OrthoDB" id="4680325at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035023">
        <property type="term" value="P:regulation of Rho protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007266">
        <property type="term" value="P:Rho protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000961">
        <property type="entry name" value="AGC-kinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039801">
        <property type="entry name" value="EPS8-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055093">
        <property type="entry name" value="EPS8_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017892">
        <property type="entry name" value="Pkinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013625">
        <property type="entry name" value="PTB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006020">
        <property type="entry name" value="PTB/PI_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12287:SF23">
        <property type="entry name" value="AROUSER, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12287">
        <property type="entry name" value="EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22975">
        <property type="entry name" value="EPS8_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00433">
        <property type="entry name" value="Pkinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08416">
        <property type="entry name" value="PTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00133">
        <property type="entry name" value="S_TK_X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51285">
        <property type="entry name" value="AGC_KINASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01179">
        <property type="entry name" value="PID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="160"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="164"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4024900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="405" mass="45778" checksum="83D33282AF83FD84" modified="2020-12-02" version="1">MTGESRTVPAGNEQSSNPFTATVRSNFHIEHLASFPLSPGDKVISAKERLQKAKELITKGEPWTKEMELSVTDNELVLLDTETQELIERYPLSHIDSVQDVNDDPMLKSVLVFSTIQTPEKYAAVHLFQCDKVPANVIAPEVNKLISKPRESPKVNGQVHGVPVLPPPPAAPAPSPPKEMMDLKQRSLVAQGVAAFQAAVAAKKEVPVPRPSQSPTKIIQGERYGEHSSPDLMEAYINRDVHILNHCIDDIEELVYRVKQVAESWKQLETKYKGKKSKSRKQEAEAIEARSPSREEFIDAFQKCKYSFIILFLTKHPDKRLGSKSENDIKDHVFFRYIDWEKLQNREIQPPFKPKIKSKRSFDNFDAEFTDEAARLTPCDKSFIANINQAEFAGFSFVNPQFPVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAF5</accession>
    <name>A0A6S7JAF5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">LisH domain-containing protein ARMC9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A015485</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Cilium basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
            <location evidence="2">Microtubule organizing center</location>
            <location evidence="2">Centrosome</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008178">
        <property type="protein sequence ID" value="CAB4014162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAF5"/>
    <dbReference type="OrthoDB" id="538223at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005814">
        <property type="term" value="C:centriole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005813">
        <property type="term" value="C:centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036064">
        <property type="term" value="C:ciliary basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097542">
        <property type="term" value="C:ciliary tip"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:000124">
        <property type="entry name" value="lisH domain-containing protein ARMC9 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040369">
        <property type="entry name" value="ARMC9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048959">
        <property type="entry name" value="ARMC9_ARM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14881">
        <property type="entry name" value="LISH DOMAIN-CONTAINING PROTEIN ARMC9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14881:SF4">
        <property type="entry name" value="LISH DOMAIN-CONTAINING PROTEIN ARMC9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21050">
        <property type="entry name" value="ARMC9_ARM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0970">Cilium biogenesis/degradation</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LisH" evidence="9">
        <location>
            <begin position="192"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="387"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="495"/>
            <end position="559"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="428"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="444"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="496"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="528"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF21050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4014162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="559" mass="62351" checksum="557B5F82A50FEE6E" modified="2020-12-02" version="1" fragment="single">ISSEYIQDLCARLFSAPMQQSMDITKPGTTSNMLRASIAKASLSSLENINNQPLDFEKIKNDLTNLPERKKGFLLQALRWRLTRSGGDEFRNSTMRAYIGNDLLGCAFPGEYQDTLIEFLQSSSAVVCQYFARLLNTMASMSAGRSYLSQSVKLVEALQKTLTTEPKDSLTSENILGCLQKLSLRRQLQTVMIESDLISWLIDVLEEHDSLSDYTLEYSVALMMNLCLRTSGKQKCANDASHILRVLSDLLGHENQEIRPYVNGSLYSILALPNVREEARAMGMQEILECFLKDEDVDMQRQVQFIIKQLNLGSDESPISYDADSDDEDDDIDEEGDAIDEELDKQEILEPGSNELAGEDLLEKEYVIRPADSTNFVRQSRKNHLLSSLDQPLSRPVTPGGRVADNKFDHFPRPTTTVLGQIPESISPPMTSRSRVSSRPNSGRPNSARLNSSRPNSSRPNSAKSDAAKETSQSQEDLKVQKNYAAEQEAKVEKLFQNNALSQSEVFGTRNKLRRSHDSRNHSPKPGSTSIPPLTRSISPPPPKSSGRPGSANKSNKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBR2</accession>
    <name>A0A6S7JBR2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043669</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016339">
        <property type="protein sequence ID" value="CAB4029685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBR2"/>
    <dbReference type="OrthoDB" id="5988050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="46337" checksum="63024B82A1756F8A" modified="2020-12-02" version="1" fragment="single">MEENCNGAYEPVFLNVKALNTKTDFDHNNASVYQYEVLGGTHNVLATKALHAKYPDNEAYSGRYAWLFVGLTDEQALWVASRHNKTGAFRHEMSFQEEVDLAHQQLQIHGSKASGGTMLPSAAWRDRCALILGKKRKAMTEIYSVAALPENGYQLFKSICSQYEKGRLKDQRALPKDLRGKPTFRPAYVRCLHGLDNVDRIELLNKFAKGDISLDELKVLAKELKAIRPIQGIISSFIGKPWEIIAKELPECTKAEQLLRFAGKDATHCVFKSYLQELLKKLEGSNDDDTILSPNVFKTEENHQGIIVRCTQDRLNAEQNECCQRDSPGYAMALYVLEDIYGNDIEKLSNLLQKVVCLVERTNFGVRHTYNLVLIGDVETVVQCKNMFNKNRSKNVEMGFLYCDNVKPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JC05</accession>
    <name>A0A6S7JC05_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064477</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015420">
        <property type="protein sequence ID" value="CAB4028347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JC05"/>
    <dbReference type="OrthoDB" id="5987613at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="19"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="211" mass="23205" checksum="58F6B756F6A61123" modified="2020-12-02" version="1">MAKEPALAEAARLLSQAASSLINQSSQPSTSRSTESSAITNQPETNNRPARARDEFRRLFAPYNQANASTSRPIPLNGNIPQRRASTNHHAKAPKRRKSVKEISIKFFCLASTTQLDVPNNDEKQQLLVAGLGEKKVTLQADSTSSDVVAALKETYPKLTDGGGYEFMYAKASSRQLSVIDEGENGYTIEFLKQFVGQGRVYIRPIQCDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JC25</accession>
    <name>A0A6S7JC25_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">RNA-binding protein 8A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A076765</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Heterodimer with MAGOH. Part of the mRNA splicing-dependent exon junction complex (EJC) complex; the core complex contains CASC3, EIF4A3, MAGOH and RBM8A.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Nucleus</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="10">Nucleus speckle</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the RBM8A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015360">
        <property type="protein sequence ID" value="CAB4028258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JC25"/>
    <dbReference type="OrthoDB" id="15688at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016607">
        <property type="term" value="C:nuclear speck"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051028">
        <property type="term" value="P:mRNA transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12324">
        <property type="entry name" value="RRM_RBM8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000525">
        <property type="entry name" value="RNA-binding protein 8A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008111">
        <property type="entry name" value="RNA-bd_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033744">
        <property type="entry name" value="RRM_RBM8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45894">
        <property type="entry name" value="RNA-BINDING PROTEIN 8A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01738">
        <property type="entry name" value="RNABINDINGM8"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="7 10" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="10" id="KW-0509">mRNA transport</keyword>
    <keyword evidence="8 10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0810">Translation regulation</keyword>
    <keyword evidence="2 10" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="11">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="11">
        <location>
            <begin position="28"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00077711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4028258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18666" checksum="321C92A4A29368B8" modified="2020-12-02" version="1">MAETDVLEVEVDDRADFTEDTGEDGLKNLKKGVTKRKGRGFKDDQNPSLNEPYDSVEADDNSEIGPQRSVEGWILFVTNVHEEAQEDDIYDLFAEHGEIKNLQANLDRRTGFMKGYALVEYETFKEAQAARDALNDAEMLEQKISVDWAFVRASSKKSRSGRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGV9</accession>
    <name>A0A6S7JGV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">G2 M phase-specific E3 ubiquitin- ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016506</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016110">
        <property type="protein sequence ID" value="CAB4029344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGV9"/>
    <dbReference type="OrthoDB" id="5974521at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="212"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="267"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="51"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="221"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="283"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="627" mass="69653" checksum="C3F838B97C829674" modified="2020-12-02" version="1" fragment="single">GDVNQEAVNVLSQFVQLLQRPGRPDNNTQPSVQNQPSTSGQNARASGNAQSSNIIPNASPAASSSHRIPSSVAQAASAPNHSVEEHRRLFSRQSGGKLLSEEDVHQQEKGAMETPSCSEKLELHQNGLGEKRVSFPVSASAAGVKDLLHETYPQLRQTGGFQFLVSQEKARKQLKVVSHGSCSVEQIRCFGSGRIYIRPLQRSIPLTEGLQDEDLPLGIGERSEVPDDRQTIDGDEQRSVRHSSTSTEHAADTRIGNMQTAHLPDGVASENVADDNGPDSTDAEPSTTDVTNRAENMKEDDEPVHVLRTFVCHFLRGRPLDVQDLTRVLEGETAEIFVSRATLFEDGMDELLGGMGHDPSLPLEVTFTGECARDLGGPRKELLGAMVREIKDCLFVDNGDSTYILREDVVAENRRHYFGAGLVFGYSILQGGPLPSFMQENLLSKLFGDTDGQVLSCAEEQVRDSFSRFGLVELIQKRPSLMYLLRRTACHPLTYPRMVRLFTPRFSEEGSNVRLKEERTYRLYLNYLKEVAAARREHVTLSSILKFATCSEDEPILGFAIQPACASVTACCHAFRHVTPASTNCYWQSVKLFPRTKKRCLPNLIWLFPVNISDWCDGQKIQRQEFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHA6</accession>
    <name>A0A6S7JHA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008643</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008974">
        <property type="protein sequence ID" value="CAB4016112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHA6"/>
    <dbReference type="OrthoDB" id="5390672at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019315">
        <property type="entry name" value="MMTA2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039207">
        <property type="entry name" value="MMTAG2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14580:SF0">
        <property type="entry name" value="MULTIPLE MYELOMA TUMOR-ASSOCIATED PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14580">
        <property type="entry name" value="MULTIPLE MYELOMA TUMOR-ASSOCIATED PROTEIN 2 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10159">
        <property type="entry name" value="MMtag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="156"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="169"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="182"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="232"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="271"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="281"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="34207" checksum="0B0F2829E7BA2044" modified="2020-12-02" version="1">MHHPSRGGVRGGKDQFEWESIKTDKHRENYLGHSVMAPVGRWQKGKDLTWYAKDKQTKMQQQQTERNKVKQLEEEAMAAALGFGTIKKKTTALTKQEIAETLKRGQTERDSGNVERVEGMGFGSSRAAMMDSNRSNDGFIKEPEAKIQQVKANTPSKERSDDENGDEHKKRKKKKKHKVKKSKDTSKKEKRENNSTRRRGSESEGGSESDTWDTSSRNKYKELKTNRKREKSRNSESEDENRSRRKDKHKELRNEPIKRKRRHDSSSSDDQYQRSKERERHTNRRQHRHDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJ30</accession>
    <name>A0A6S7JJ30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053389</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017239">
        <property type="protein sequence ID" value="CAB4030928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJ30"/>
    <dbReference type="OrthoDB" id="5967439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="550" mass="61482" checksum="8A3084FEF8D141AB" modified="2020-12-02" version="1" fragment="single">MNTDLLECKKKAMEYLKSENPPCHVNGRKKGYIQVMKDLWDKRGYEHLGLKSQNLRHQAARLEKINAAIETRAIGKVSGGAVIDDEREQTLDENQRRHNTISQHEFNNFENQNTISQNANLEVNSNLDLHTDNDIVQNSHERQETEAVEGFEVTNDCPGEPHAGIHETGRLPDYVAVDIPSITIWGRRADGSIITVNSSTIINAYDEITRWRKNTFLVPYGKVALKAAIVLLATALQKPSVKSKAKDHKECLEKRLALWKEGEVESLLREGRSIQKRLAKAKRTEPPNKAKIFAKLILNEADCDGVLSLTDDVMRQLQEKHPEAQEAKLGSLLFGPFEEVHDSLYQQIDGAMIRETALRTKGSGGPSGVDANGFKRIFACKSFKKSGVNLCEAVATMIRRLCTEYIDPRTIEPILANRLIPLDKGEGAVRPIGVGEVVRRIVGKCVMKVIKPNVIDASGLLQDISTMSNINETPKKLVPTAKHKKLNSNDYCRCCKLSLRVQYGDSWKSVSTENVFNASKKKGFEGQILAQNVDAIGIKVERKSDLSERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJQ4</accession>
    <name>A0A6S7JJQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028068</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009296">
        <property type="protein sequence ID" value="CAB4016881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJQ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="49" mass="5513" checksum="B9169EEF7A6ED18F" modified="2020-12-02" version="1" fragment="single">KNMFLTIKPEKEMSWLSPILKGEDLKVKAKSLNFMTKPLAVNTKAFGTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLT2</accession>
    <name>A0A6S7JLT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065443</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019307">
        <property type="protein sequence ID" value="CAB4033506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLT2"/>
    <dbReference type="OrthoDB" id="5982167at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="19841" checksum="AEC55C613129B5E0" modified="2020-12-02" version="1">MSSEPLLIVGDFNIHVDISRDPNAIRFLDLLSSMGLDQHVDKPTHTSGHTLDLIITRNSDTLLPTRPLTDYLFSDHITVICDLTLGRIPPTEKQVSYRKIKAIDKTRLREELLTSDLCINSPDTLNELVKCYNDTLAQTLNRHAPLCTKVIKSRPLVPWFNDDIKIARREKRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQZ1</accession>
    <name>A0A6S7JQZ1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Hexosyltransferase</fullName>
            <ecNumber evidence="9">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A056520</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Golgi apparatus</location>
            <location evidence="1 9">Golgi stack membrane</location>
            <topology evidence="1 9">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the chondroitin N-acetylgalactosaminyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="9"/>
    <dbReference type="EMBL" id="CACRXK020019263">
        <property type="protein sequence ID" value="CAB4033458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQZ1"/>
    <dbReference type="OrthoDB" id="5971499at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032580">
        <property type="term" value="C:Golgi cisterna membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008376">
        <property type="term" value="F:acetylgalactosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008428">
        <property type="entry name" value="Chond_GalNAc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051227">
        <property type="entry name" value="CS_glycosyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12369">
        <property type="entry name" value="CHONDROITIN SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12369:SF5">
        <property type="entry name" value="HEXOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05679">
        <property type="entry name" value="CHGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="25"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4033458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="653" mass="75621" checksum="33DB7D237D88219D" modified="2020-12-02" version="1">MLVKWKHSRHVGEMFLYFLPRRRQILKYFALILVVFIIVRLFSKSETPSEEPGLPILVVQHGNDQYFRAKPPLNLETYSKQHMQWEMRKQTSSSTSEVTYGKLNVHIWGEICGYDLNSLKNHVLFPKYPQRRLHTHTTGFTHGIGNNDFGERIFGFLLPKSTGLHSFRILGKSVEVWIGKNADPSSAELVYQNSLSHNSVGKFELKLVAKNKYYIEILHKKGNQDDDFALTWKVPGGSHFAEIGGSDISVKALDAYLRNGEVDSTEPNLEIPTIHRKIRFPILNEQEQQRNDLFKLPLIPDKVVKNVLTSCDYKPSYIVDHTLTNYKGVWETHYSSLYPIDKSNVTRGGWVCLGNDGLKEREAVQIVEEYMKSLDKKNSGKYKLNRILSVEKNHDPLKGDRYLLELEIEDIKTSESYRLSEYVYKQKGQTSLCAPHAYRWSRNATVNIVLTVGGRQGRWVQHFINNLAEIYRQTKDQNLNVIIMDFHSKDINIEEALKLSGLPRYILLHMKSKFHKTIGLQYAMSIVTDPNDIVFVCDLHLYLPVTIVDHIRKHCIQGKTAFNPLLIRLDCGYTASNPNGRWEHDGYGPIATFKSDWDRFGGMNVERFRHTWGGEDWDLVDRILSAGLEIERLKILNFFHFYHTKKGMWKDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1T5</accession>
    <name>A0A6S7K1T5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037493</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023983">
        <property type="protein sequence ID" value="CAB4038247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1T5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="23"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="79"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="125"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17372" checksum="8836F2C911B8152F" modified="2020-12-02" version="1">MQHRTQRKLIPCKLLTQFNLRVNNDNNDNNDNNDNNDNNDNNDNNDNNDNNDNNDNKDNNDNNDNNDNNDNNDNDNNDNNDNNDNNDNNDNNNENNDNNDNNDNNDNNDNNDNNDNNDNDDNNDNNDNNDNNDNNDNNDNNDSNDNNDNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2Y3</accession>
    <name>A0A6S7K2Y3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021685</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024513">
        <property type="protein sequence ID" value="CAB4038727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2Y3"/>
    <dbReference type="OrthoDB" id="5987109at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="385"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="426"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="497"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="385"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="513"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="536"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="547" mass="63252" checksum="69BF327C4415A70F" modified="2020-12-02" version="1" fragment="single">MKDDEIEEEDDNYGIYSLGKGQAEPYVVDVLVRNESLKMEVDTGAAVSVMNEDTYTLLKKKHPNLELKESKIRLNTYTGEQVNVLGQLKEDKNTSVKVNKLLEKYEKVFHEELGTFSGPKAKIYVAEDASPKYYKARPVPCALREKVEKELERLQKEGTIEPVQFADWASGWPSKCPDGEFQPYFQRRDELSVQDDCILWGNRVVVPPQGRRQVVDELHETHPGICKMKSLARSYVWWPNMDNDLENKVRTCNNCQINRKNPPEAPLHPWEWPSRPWERIHIDYAGPFLGKMFLIMVDAYSKWLEVHPTNVATSRATIEKLRSTFAIHGLPKTIVSDNGSNFCSEEFEEFLAKNGIHHRRTAPYHPASNGLAERAVQTFKEGMKKMSNKESLETRVSRDSASGNAYEQKTKIFRPLDVLHPDVRQRVQDQQKKQKELHDQHAVDRQLRPGDLVYSREYGKQQKWCPGVINTQTGPVSYTIQLEDDREVHRHQDQVIHRETPEENENDVMDPDINQQPVPDQQVVSEENAVPAARYPQRDRQTPDYYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KF18</accession>
    <name>A0A6S7KF18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">5-hydroxytryptamine receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A085902</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027083">
        <property type="protein sequence ID" value="CAB4040660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KF18"/>
    <dbReference type="OrthoDB" id="5959645at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050569">
        <property type="entry name" value="TAAR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249:SF372">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249">
        <property type="entry name" value="HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4040660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="323" mass="37061" checksum="709B9DC23BBC8749" modified="2020-12-02" version="1" fragment="single">MMNDDDDDALMLSESDQMKLDVFMEMFHFVQIIVLITFAICTILGNTLVLVATWRERSLHQPNKYFIACLAIADLLVGMILEPLELYQNTLDGEWQRTRSIHLCRFMVWIDTFALSASIYTLTFISFDRYLKITKPLQYRVRMTTSKSLKIIFVIWLLTTAFATYAATPNSGSLGILATSEEHCSPVDDNKITEFYTFLAVCAFFLPTVVILVMYALIFVVVHKRQKMLRNGELGQTCNDRNQRRAFLQDLKTIRMLLVVVGVFVLCWGPYFICLFCYPNSADSDNRSLSYWYLVHAGGVVVKTLPLFNSLCNPIIYACLDQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFI2</accession>
    <name>A0A6S7KFI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032760">
        <property type="protein sequence ID" value="CAB4043617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFI2"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="509" mass="59161" checksum="95D6B82134A90DCC" modified="2020-12-02" version="1">MVMFQNFFQVQRGVRQGCPLSPLLFVIVAEVFGQAIRKCPEIQGLRVPGGKEVKISQYADDNTCIVTNSYGLVKVIDVFNEYGRASGARLNTTKSKGLWLGRWRSRTDSPCGLTWVNTSLKIVGIYFGSENVNIQSWAEVTAKFKGILKKWEPRYLTLRGKMTVIGSLVASTLWHVVKIYPLTRECIASLQSEIWKFVWSKKPEWVRRETCMSDYLNGGLRIINLDIKSKALLIGRVFRFFEESEAPWKDFMRYYIGRSLGINDNSRPNSDIPTPFYSHLLRVLREFAVDLGQPRTSKMYYLKRIEDCVTPVQARSELAWNQRFGPGLIWKEIWTDVARSFNDPVLRDFDWRAVHRVLPVNFRVHKWYSRISSACARCGERIETLEHTLIHCPMVKELWMFILKLCNQIDASVIGLSERNMLLGCFPRTRTRDLLRYLISVGKFSAWKERVSYQFRKDEKINSLVYFRNYVRTRLETEQGIMGTKNFESKWCLNNVLACVTNGIIRTLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMP3</accession>
    <name>A0A6S7KMP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039606">
        <property type="protein sequence ID" value="CAB4045468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMP3"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="69" mass="8349" checksum="05ADA967E591C885" modified="2020-12-02" version="1" fragment="single">KNILNRHKEARENENKRQKYNERYANERRNAKESVIKEGDYVLVKQPKANKLTPNFNQTPYVVIYRNKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KU47</accession>
    <name>A0A6S7KU47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110041249 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016716">
        <property type="protein sequence ID" value="CAB4030212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KU47"/>
    <dbReference type="OrthoDB" id="413313at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004245">
        <property type="entry name" value="DUF229"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974">
        <property type="entry name" value="FI08016P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974:SF1">
        <property type="entry name" value="FI08016P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02995">
        <property type="entry name" value="DUF229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="29485" checksum="C378A4F7C0FD7F2D" modified="2020-12-02" version="1" fragment="single">MFFILLDPTVISANYRRIVRQGDFKFILGKSVPIPAMDTAEKITDEFIEVEYFLKNKNRVKEIFLQPVPHEHLLKKSAQKQPGIPLNILIIGVDSLSHSNTKRKLPKVYKYLKNELRSMLFNGHSIVGDGTTEQLTAMLTGLGELEQYESRRHHKKPKPVDGWSWIYKQLKETGYLTGYSGDDPGIGPWQYRLMGFTNPPTDFYTRPFYAMAAKLIKKPNICLGSRTISKVQFDYIREVFDMFKNKLKFFFSFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KUE8</accession>
    <name>A0A6S7KUE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015800</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037038">
        <property type="protein sequence ID" value="CAB4044961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KUE8"/>
    <dbReference type="OrthoDB" id="5983763at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="34014" checksum="FA79098A71A73E14" modified="2020-12-02" version="1" fragment="single">MENGQLIFDQELFDEQMKKSGLLNSLSNPIFPIQTQFCFIHLTIQEFLAALHVTETYAPADMNEFITNHIRSGKWHLVLQFIAGLLGKKIKMFYRDYIECVLAFAKNCDVIHGKHNLNVNQVLVMKCLREVDDEEIVKDVCETTAMNDVVKLRVDGFHPSDSAAVMFVCKHMKNLTQLYFRNYADCFREFLQLLQKRCINILELMEGFGDKDKHIGAGPVFSALMKSHCTLNHKHTNLTFLMLHGVLLDDPGLSNMRAFFENGHAKHLEKFHFDLPLSPLSWREEMNYTAPLSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8H5</accession>
    <name>A0A7D9D8H5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase Ty1/copia-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000148">
        <property type="protein sequence ID" value="CAB3978874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8H5"/>
    <dbReference type="OrthoDB" id="8188638at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="33"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="35539" checksum="35CDC007E58A5BFB" modified="2020-12-02" version="1">MDVTASFLNGGLEDEVYMKQPEGFEVKGKEYLVCKTNEKIAKLKESIAERFQVKDMGELKYILGLQVIQEDGKVYVHWSAYLYTASIIKKYGMENCKPVETPVDLSSKLVNAMEDSELFNKEEYQAVNSQSLLYLSSATRSDITFAVNNVAKFSANPTNEHWTAVKRIFLYLKGTVNYGLLYSENASPDCVGFSDADWTGGLNGRKSGSGYTCQIHDDAVSWRSKKQICVALSTAEAEYVALSVAVQAALWMRQLLTDLSVNDIDEQVTIYEDNESAIAMSKNPQFHGRSKHVDIMYHLYETSRKENINCALLSNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEZ5</accession>
    <name>A0A7D9DEZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sperm-specific antigen 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000702">
        <property type="protein sequence ID" value="CAB3984154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DEZ5"/>
    <dbReference type="OrthoDB" id="6088188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005102">
        <property type="term" value="F:signaling receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029325">
        <property type="entry name" value="ITPR-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043444">
        <property type="entry name" value="TESPA1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17469:SF15">
        <property type="entry name" value="ITPR-INTERACTING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17469">
        <property type="entry name" value="SPERM SPECIFIC ANTIGEN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14722">
        <property type="entry name" value="KRAP_IP3R_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01257">
        <property type="entry name" value="KRAP_IP3R_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="440"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="549"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="593"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="855"/>
            <end position="876"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="440"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="486"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="593"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="605"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="857"/>
            <end position="875"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="972" mass="108397" checksum="D976C6713448590A" modified="2020-12-02" version="1">MLATQPPLNCILSENFSPRQKAMKNGSKNDHLVFTLEDDISDQVLKSKNDKDTTPGSSSVALWIKSLKESNAAFDDSSQDYHAYTGSSSDADDLQLGAEATDLRRKHKTHKHPPPLSRDSDSDSSYNRWFSCTGRRQFLTNRLSYDRSLDSDTSGLSSVTSVSSLLTARESDPEDVLKGLGFRGPSVLDRIPDRFINTGTVCDGVDSRQFLYSVNDDSEDAMHTNSEIPPWVMTRFDDIPTKFWNQKEDPFESADEGEDVPLVNEPSDEAIEEIPIRLPKTFPSKFGTYLEPVTEEAELSSQGSVALSPMKNISFESTRSTLKANSQDGPENMAKIPSLCDLWQNTEDEGEVNSEAYRSEDHGIASDDTGNNMPASNIPEEIDQGYNGDWIDKNRDNSIDPWSSTLTIAEVQPTTAEDSPVNPWSWTPAIADIQDIPAISSGQWSSPQTDTVPSLSAYLTDNNTPVSEGHRESLEVESEPTDNRCQEVTNSDKLTKPNTSNNLPDLTPKHPRLSIPILTISEPVEKSRKISTVNAPDIDKLLPIIWPDKSEETNSQSNKKNTAGKGKVSCDTRQTKPTQWNMYGSQQWATLGSKRQPQISFSNKGKPKVTRKLSSRSRKTVDTKVTLSVSQCRKALQVTLPCENDVTNIPCFSDLGVECSNRPGKTCSETSKTSAIQFSGCSETSKTSTIQNSDDFEAFKNPRRTFTSFEQTKNSSSAQWNFGQSEKSNAVHCNIKKRSEKEDETRINDVYSDEHFSSKKEECLGAEKPGAHLNHGISIEEELDGLQNSLKGVKMYKAGIHLIQLASSIETVMCSEKRPKRLQGRSSERLLDSIQGELKHLEEYILRLQKQLKGIKKQGDGKEERSEEAHRRGSDFSDITRQLLQEQLRMFSSISSAAVSPTSSASVSREPSLCSDTPDVLRHTDVMKLRKEMQQLRQDSVEQNASMKEEILDEVRAEIRKCFKEFLKPESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DV88</accession>
    <name>A0A7D9DV88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002283">
        <property type="protein sequence ID" value="CAB3993556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DV88"/>
    <dbReference type="OrthoDB" id="5984798at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF4">
        <property type="entry name" value="PEPTIDASE S1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="288"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="648"/>
            <end position="679"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="154"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="663"/>
            <end position="672"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="944" mass="108307" checksum="1CE4D0CB202FD020" modified="2020-12-02" version="1">MSTKADSLVSELSDMDLDLELTPLGNDDISVRVNRRFKKQTDKGRAYQIERKKEHCKSIQKRITKIMKTIESSITEWDNVHEVQNDLEVFSQQLVEFQAAYEAWRDLLSGQELVPVTDWYDEHFRIMNNCKVKIFDWIAVAKYKIEEQMDDKSSALKSSIESRRSAGSRHSSTSGRARERAKVAELRAKAALLEKKQALENESEKLRLQEELAIAQAREQAFIQNDIESKREATTDGMNEYLEDTRPVPKENLLHDQLTKNIPTPQFSSTNIPQPTPVSAFHSRRAHQTPVRLPQYSSPHIKDTTPSPRLTAQQPFTDYAHEWKPPPSEYRNRVTLDNDPLIYLLEKQNRLTEMLSEQHQQNFLPSLSLSSFKGDPTEYHLFIRTFGMRVERNVKSSGARMQYLQQYLDGEPKDLIKGCHYMEPDAGYVEAMKLLNEKYGDPYKVSNAYLKKVNDWPTLRPGDDNALEKLAIFLTQCLSAMESLSYLVTLDHPNNLQCLVKKLPFYQQERWRREVTKLREKGKNPAFKHFVNFVKTEAKIATDPIFSRQALDKIGQDDKSKFKRGSTSKFTSNATMMKEESPNSCIACNGLHDLDECKVYLKKSLSERRALIAKRGLCYACYGSGHRSRGCIQRRSCKTCSGRHPTGLHDENFRMKNKNSNKPPKDIDRTEDSNSDNQRKSCSYAAAHEVVCDASNVKFSIESMPIVPVRLRSNDKEIITYAMLDSCSTGTFISEDAVKRLEVNGTDTKVMIRTMNGPKMHDTKVVNGLVVSDLDGASSITLPKVFSRDEIPGRKSEIPRQELCRKWKHLERVVEQVHPYMENVKIGLLIGTNCPQAIEPRDFVASNNGGPFAVLTFAGWTIVGPLYLSDNENEVDCHRIVVQEIGSDKPSEHHFMVEESVKELVTPESLNKMFELEFNERHCQKEQYSQEDKRFMEKIQRDTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DYE0</accession>
    <name>A0A7D9DYE0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043761</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003004">
        <property type="protein sequence ID" value="CAB3997029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DYE0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="74" mass="8611" checksum="7A21429D8632FE4C" modified="2020-12-02" version="1" fragment="single">DRINQHLLKMCVKSLQDHHEHPCEKLFEATISHPNHKIGKLSVSNKTRGELQFKEQRTFNAYVSRTRATQSIPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DZ59</accession>
    <name>A0A7D9DZ59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">THAP domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A058175</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002822">
        <property type="protein sequence ID" value="CAB3996202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DZ59"/>
    <dbReference type="OrthoDB" id="7312725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052224">
        <property type="entry name" value="THAP_domain_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46927">
        <property type="entry name" value="AGAP005574-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46927:SF3">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043915979" evidence="6">
        <location>
            <begin position="20"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="405"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="405"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="430"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3996202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="51131" checksum="CDD21C2870AC05DC" modified="2020-12-02" version="1">MLVAKVTFVLGLLVYGGGCKKRGEEISREKTTRFGHIGIEKRAAAAPPKPAVPADCRKTVGGEGGNAKQIFTQLIHAIERRLYSKELAINQFGFLYMHGKTYGVQYDDPNVSKVMQWTKPLPGKGKQLPGLGKPPPDSSPLPNKIIWPAKGKTINFQFAQPTPAAIGRPGNIGHSEEQLLNSFEIMADNFIAKHGNESSSTKSISLYRIPYWDDSRQIARSRRKKWEDFIRRKRDKWVPSVSSVVCSEHFAQECFEYGSSTVEKYKIPKLKRDEVGVTAVPSLLPKAASLDSERSMRIQHRGKIAFAEGPPTVEEPQSSMSTNITFEEGLSTGEEPGPSTSKKIKEASALDFGTDLYHIACNNHGECSNCKALLLKNKRLKSDWLSAKNKLEVCRMQIAQNSGEEIHPSTASRYDEQCSSDIGIPPSDDFHEEDCYDEETPEESTETETDDETNPQHKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E4I3</accession>
    <name>A0A7D9E4I3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003689">
        <property type="protein sequence ID" value="CAB3999865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E4I3"/>
    <dbReference type="OrthoDB" id="9982103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037394">
        <property type="entry name" value="TBATA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33772:SF1">
        <property type="entry name" value="PROTEIN TBATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33772">
        <property type="entry name" value="THYMUS, BRAIN AND TESTES-ASSOCIATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15256">
        <property type="entry name" value="SPATIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="165"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="320"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="395"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="320"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="438"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="461" mass="51627" checksum="1A67B55B2DB86329" modified="2020-12-02" version="1">MATLHEMATDRRRLSRGKLISDSLNDLPRTSRYAFDGSKPTSRQSLHSRCASFPQRSSKSPFFVRHNPHPKRVIHLKGLLDVPVCTVIDSNSHEDPARFLVRTPALPSEGPARLRGLRMPLNATSFVTCKEKAVPGIGLVPITQTWREELARLTEAAGLRKRHPIISKTGLLQPPGSRQSDRPIASREGVNGDLPPSRNGDKPRTPGNQETPPASRQCSRQASDRPLEHIISVTDNEGWVMETLCNILQTDSITAVQSWLVNAPGREKELVLDMIRAISTSDYEFREGYQQAVRSPIYEDQLLQHESTLDIDAIREFNETHGRKSNRDQEIFKEERQTTPAVEELQKPRTSASQNGVKAANDWIASELKPSSPFKPRPGTTDAQIEEIRSKLESRCSPRVFSHQSRVPPSRHSSRAVSQQSVYVPPAQSLDAAAQRPPTHQSIKSQQSVLKSILEYKPEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E7T2</accession>
    <name>A0A7D9E7T2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004201">
        <property type="protein sequence ID" value="CAB4001886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E7T2"/>
    <dbReference type="OrthoDB" id="6784470at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="13"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19184" checksum="94206BB0B36C2BE8" modified="2020-12-02" version="1" fragment="single">QACEHPPSRELESQLPVSQQQPPQIKVSGKKGLGLCDVKMPAKMKARGRPKGIGQTAIGVPKKSKDANLPTPYAKKCREDKTRLILHWFIDNHTAESAISKEQMITEKELKANKDISFACLDENIEIARIKPYFTAAGWSAVLKSVKELKKTNHVLLYLQERIRRRSVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E801</accession>
    <name>A0A7D9E801_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP synthase F1 subunit epsilon</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A009331</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATPase inhibitor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004788">
        <property type="protein sequence ID" value="CAB4004028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E801"/>
    <dbReference type="OrthoDB" id="10045676at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042030">
        <property type="term" value="F:ATPase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.500:FF:000007">
        <property type="entry name" value="ATPase inhibitor, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.500">
        <property type="entry name" value="Single helix bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007648">
        <property type="entry name" value="ATPase_inhibitor_mt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48417">
        <property type="entry name" value="ATP SYNTHASE F1 SUBUNIT EPSILON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48417:SF1">
        <property type="entry name" value="ATP SYNTHASE F1 SUBUNIT EPSILON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04568">
        <property type="entry name" value="IATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64602">
        <property type="entry name" value="F1 ATPase inhibitor, IF1, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0809">Transit peptide</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="73"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="75"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00030036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4004028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14349" checksum="8D0A26ED8ACF3C2F" modified="2020-12-02" version="1">MAHNIAARRVCILRNSLVFLRPQVRAMTSEYGSGEGKGGGAGGSVRSAGGAFGKMEAAREEEYFRKLQQEQLQALRDHHRESVKSHEDEIQMHQESIKKHEDAIKRSKKMKNKIIETMREVEDKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E973</accession>
    <name>A0A7D9E973_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-I Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066453</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004960">
        <property type="protein sequence ID" value="CAB4004646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E973"/>
    <dbReference type="OrthoDB" id="5953333at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="281"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="331"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="281"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="353"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="375"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="415" mass="47117" checksum="D3D8620A128C0CE7" modified="2020-12-02" version="1">MHAVPKALTLEEIKEATKADTTLQAVIQAVQTKQWHNAKLQPRVDRKSVECFFHIQNELSVNSDQSLLLRGTRIVIPSTLQNHVIDLAHEGHQGISRTKQLLCEKVWFPTIDKQVEEKVSCCLACQVTTNTSNIEPLRMPEASKNPWESVSIDFCGPFSSGEYLLVLIDDYSRYPEVDIIRTVAHTTVIPCLDKIFAPHGIPRTVKSDNGAPFNSTEFKQFANYLGFQHQRITPYWPQANGEAERFMRTNYRATPHSITHQAPATLLFNRAINVKLPQSQTVAPADPNHQQALDASCKSRQKNKVHFDKRNQAKSSEFKVGDAVLLRNSKKGKLQTPYEHQKYQIVKKKGSMITASNDNRQATRNSSHFKKFKEKKGGTDNPADKEEQPSKQNTNERPKRKTKPPAYFGYKQSDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EB07</accession>
    <name>A0A7D9EB07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038996</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005346">
        <property type="protein sequence ID" value="CAB4005896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EB07"/>
    <dbReference type="OrthoDB" id="5982977at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="728" mass="83629" checksum="144A43264423B052" modified="2020-12-02" version="1">MSEQKPVKRKHAYRYRVVCSVCQKEIVAEYQDVHAKTKHKGKKVKFTVAVDAKQAKLCFATAGETVAITPKTKKSDGDTDRVDNEAEGSENDCQTTLKCVNETVSSVMYDSQSFDDNFDTIRVHAPDLKDCNSEKSCLQMKGPQQPLLKSYDPKKMGNESFTRDFNPEWYKRHPWLSYDVSSKKANCFPCQMYMKGKDSFSFDNWKKPERLAKHHKSEKHQTAMEMWMSSRANKKHNSSVLSQLHEDHKQSVKENRAYLRVLIESLMYTAQQNVAQRGHEEERVNLDKSSDVNRGNFLEHISLRCRDIPWLGSKLDQQLKKHAQWTSPAIQNELLEITADLVKERIVNDVKSSGWYSIIIDETSDISKIEQVSLCLSYCINGIKKEAFMGFYATKSTEGEVLYELVKDTITKLNLDLKNIVGKAFDGAANMNGIHKGLSTRMKECSPQSIYVHCYGHLLNLALQDTMTEAIHNFIEGSPKRHALFSDIEVEDEKYKQTLKSLSVTRWSCHWEAVKAVYNQMERIVKTLLKLSSDKDPKTYRDSRSLLTSLCDMDFIFGLCVLRIILRNTNSLSQYLEGKEVDVLSARRISSTTIETLRRCRSEQNFNLVWQMASLMGLKMKSWLGNSLFKVTPESHHRINTYYLSIDKILSELEVRFSGTDQQILYALGDVCQSETPKMESFTTVAEFYGMDEEILQVEQKMFTTFCLKRGLPQGKKLSKVLGFMQLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EF51</accession>
    <name>A0A7D9EF51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005682">
        <property type="protein sequence ID" value="CAB4007050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EF51"/>
    <dbReference type="OrthoDB" id="10593772at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031248">
        <property type="entry name" value="RNF213"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605:SF16">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605">
        <property type="entry name" value="RZ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="28223" checksum="454074BCBA83DF3C" modified="2020-12-02" version="1" fragment="single">ANSPPGQFYKKEELQKPESRSKKKRKGKDNKNSTDNASDKCLTVVFHAILSDKFKLNKGTKIVIRGDEPVFGGWKNGSVNIKTGEYIDKQLLLHGEMSVPLRLASIKAGYKYVLLNNKAVYEELVGYQYMIGGYVNRCLVLEEENVTENKIFHKYDGFVYPKRGWVRNFFFYGSAINDRGAFFRNFFPKWSGFYVDSFDEKIQLEEALERLQCLVNGTTSVWTSTSGNAENHPIDSQKLKLEEVGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIB5</accession>
    <name>A0A7D9EIB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">EH domain-binding 1 1 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A021156</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endosome</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007075">
        <property type="protein sequence ID" value="CAB4011228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5972258at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.418.10:FF:000023">
        <property type="entry name" value="EH domain-binding protein 1 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022735">
        <property type="entry name" value="bMERB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050540">
        <property type="entry name" value="F-actin_Monoox_Mical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019448">
        <property type="entry name" value="NT-C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23167">
        <property type="entry name" value="CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23167:SF46">
        <property type="entry name" value="EPS15 HOMOLOGY DOMAIN CONTAINING PROTEIN-BINDING PROTEIN 1, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12130">
        <property type="entry name" value="bMERB_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10358">
        <property type="entry name" value="NT-C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00033">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01203">
        <property type="entry name" value="DUF3585"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51848">
        <property type="entry name" value="BMERB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51840">
        <property type="entry name" value="C2_NT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0967">Endosome</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="190"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="472"/>
            <end position="651"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="719"/>
            <end position="1250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1268"/>
            <end position="1334"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="1345"/>
            <end position="1429"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="219"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="472"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="516"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="536"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="585"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="626"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="756"/>
            <end position="766"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="771"/>
            <end position="785"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="842"/>
            <end position="858"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="859"/>
            <end position="875"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="876"/>
            <end position="893"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="903"/>
            <end position="921"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="942"/>
            <end position="967"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="994"/>
            <end position="1021"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1024"/>
            <end position="1042"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1079"/>
            <end position="1102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1219"/>
            <end position="1229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="1282"/>
            <end position="1291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="1323"/>
            <end position="1334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4011228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1438" mass="161628" checksum="357E2C0151C5B421" modified="2020-12-02" version="1">MSSVWKRIQRVGKRASKFQFIASYQTLTLECSRDGKWQPNKLSVVWTRRNRRKAVKPETWQPSIANPFRGMIVWTDPEEVEISVTLYKDAREGSPFEDKLWTFVIEDESITGKRRPVASVSVNMVDYHSVDLQTFCLNLPLRPASKKVISASLELNLACVLLKEGNATDEDMISMSSLLSLNDPYGSKEFDYDHSPGKNFKRNAGKRLSLRSAKSKSKPTFNMATNTGSPKEPKKNMKSKGKAQKNEKMNMSLPATNHVTENGLNKALSTSDTDLSKIIENKPSPKLKKKEEQMSAPEQSLLKWCQECVEGYTNVEVTNMTTSWRNGLAFCAIIHHFNPDMIDFLSLKPDNIRENNRLAFEAFEYLGISRMLDPHQMVLSSVPDKLLIMTYLHQIKLYFTTKKKTADDEDDDDDVTMETIVEAERSLRLNTESLINDIENNDFTRVKNRETDVKTDTSKGVKTDTLKGVKTDTSKGVKMDTSKGDITDTSKGDKMDTSKGDLSKIEYEVNPGYNPFDEDEPITEDDIDIGFTPESLEDRNVKTKPCDTTDPEGKKQNDNVIKDENSPDKTSEKLEVGSSRNASQKMDKIEHENLPENKDKGSRHSVQEETQKQERQNSPKKVQKPSPRERKITEEDPWKLGSSVGIKNENKHKIKGKDVDAVLTKPERLDVTGNKSLQETVLYSPKPGYNPFLEEEAEGVNVKTDDDAEKLKLENEFSEKAKLSSQNTEYGRTQEVGKAKSLNPFDADYIDDDVGDTNSATTSKPKSLNPFDDDFDEPFETDLDEVLSGNNIAKTGSGVDRDLGISSTDKGLGTSEIDKGLGTSDADKSLGNNDISADKRLGTTNIDEVIVGNTSPRIDSNRLQRKTDKRLDKSVTTKAASKNDSTQNNTSPVRGSRNLPKITGTSSSLPVRSTENVQVTQMHRKEPRRPGERPSTLAAKPPIEKQLTESHIKLKRPESENLGRKETPTSPTPARGQLSLPTSPRRRIPSFQEWKAKKSDDAAKQEEIKAQARQMIKEARARTAKSQNVSNSEQEAQDNAVSSRIPVPANASLPRLPTSKKYKAPEPPSVTRQGSLASKLKDEIEYQKKITEKTRKTLESSRIKRINPKQEGVPGVEKRSERSELVQQAIREAREKPNKNPTPPETADDVSKETAAMTSPPKPPRVYTYTEETESEPRDEPQEIGSESQEIGSKPLETGSEPLVEPQKTGDEKGEDGTEANSSLQQNPFKLTFKKKESIPQAVVKPVPSTVGRDTKIDLKKYSVKARTFSESHIDNSANRCSGQLSSSQESLSDHAHSSEEDVNDILDNVGDASESENKTDEELYDNGEDEEGFQDTSQYVEHEIAVLEEDRVALDRVAVKLEKELREAMNTADCKDEEQRLFQEWFLLVNKRNEIVRRQTELSILEKEEDLEKRFELLNRELRFLMADNSKFKIVPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EL83</accession>
    <name>A0A7D9EL83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A058074</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007568">
        <property type="protein sequence ID" value="CAB4012588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EL83"/>
    <dbReference type="OrthoDB" id="5988470at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054465">
        <property type="entry name" value="Integrase_p58-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22938">
        <property type="entry name" value="Integrase_p58_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="8">
        <location>
            <begin position="241"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="528"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="614"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="543"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="557"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="633"/>
            <end position="647"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4012588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="675" mass="78736" checksum="A62B874DF819B05A" modified="2020-12-02" version="1">MEHFASYLIGKPFRARSDHNALRWIRNFKQPKGQVARWIERLSVFDFEIEHRPGRSHGNADGVSRIPQDTREVQSGHVCNASNGNDETSPWCLRWTAKELSLHQHEDPEICRAIGWVKDGKRPPKEDITRMGPLMGKLWSKFDQLTLVDGLLYRIFENDNGNDRHLQICLPRKLIKEVLELTHDIPSAGHLGSQRLKEVIKRRFYWSDWQSDVEMHCKNCQICAERNGPSRKRRGMMVLDQPGYPMERVAMDIIGPLPKTPDGNRYILVVVDYFTKWPEAYAIPNQEARIIAQKLVDEWICRYGVMQRLHTDQGRNFESAVFKEIIDILGIKKTRTTPYHPQSDGLVERMNRTLKDILSKLVNERQDDWDRCLPQALLAYRSTVQTSTGFSPHFLMFGRETRIPVDLMTPEPPQAEVPPTTSEYAEKLRKRFERTYELTRVNTKKSSERYKDYYDAKAKDTTYNVGEKVWLYVPFVKKGKNLKLSRPWRGPYTIVKKISDVVYRIEKNANKRNRLVVHYNRLKPCFERPLKSLPNRPPNETKLQSKETTETRKENVENCSGQTPQTEPPTNGGNDEDEWTVRYFRRNLRQSRPSRAINGEEHGQNLPDEVQEDVQHLPDELQQDGPLSSMEQDNQRDGSDETLREPVEGNEGQSQAPPERPARTRKKPAWLRDYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EM49</accession>
    <name>A0A7D9EM49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070047</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007791">
        <property type="protein sequence ID" value="CAB4013179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EM49"/>
    <dbReference type="OrthoDB" id="10253954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13356" checksum="DBE8A43AC12B65FD" modified="2020-12-02" version="1">MVVNPKKTKDMWISFSQSSLEPPPIQTDGIEIERVNSFKLLGVWVQNDLKWNTHVCKITKRANKLLFLLRECRKSFLPPEIGLLTYTSKIRPILEYASPVWGGIPKYLEVEIERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EQA2</accession>
    <name>A0A7D9EQA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NADPH oxidase 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A014995</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008182">
        <property type="protein sequence ID" value="CAB4014170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EQA2"/>
    <dbReference type="OrthoDB" id="167398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043020">
        <property type="term" value="C:NADPH oxidase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016175">
        <property type="term" value="F:superoxide-generating NAD(P)H oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042554">
        <property type="term" value="P:superoxide anion generation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06186">
        <property type="entry name" value="NOX_Duox_like_FAD_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000056">
        <property type="entry name" value="NADPH oxidase 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="entry name" value="Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013112">
        <property type="entry name" value="FAD-bd_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013130">
        <property type="entry name" value="Fe3_Rdtase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050369">
        <property type="entry name" value="RBOH/FRE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11972">
        <property type="entry name" value="NADPH OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11972:SF58">
        <property type="entry name" value="NADPH OXIDASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08022">
        <property type="entry name" value="FAD_binding_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01794">
        <property type="entry name" value="Ferric_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="Ferredoxin reductase-like, C-terminal NADP-linked domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="Riboflavin synthase domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4014170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="430" mass="49943" checksum="6570306057A3E273" modified="2020-12-02" version="1" fragment="single">MMKGLLTWLRSTRSGKFFPIDQHIIFHKCVATVILLQSVLHFIGHLGRYITTDPPKFEVWEYMFTTRTPEGWVNGSAGITGVLLLIILVVMCILSQPSVRKRGLFELFYYTHHLYIVWWALLIFHAPNFWEWFIVPGGLYIAERILRLRIVNRARYGKTTIEEGITLPSKVIHLVIKRPPTFQYNPGDYVIVNIPQIAKYEWHPFTISSSPDLTGYFWLHIRGVGTWTKKLYDYYEDKEEEECTRKSVKRATIRQAKAKSINDKERQTQRSILQRYTTSIKRDGVRAIMEKVEEEREEEIDPNNNESVDGLSEVVIENEQTISEEKETVVLSRSNNVENRLLQQNERRQSLWRNGTNKLEIYVDGPYGAPATHFTEAEHAVLISSGIGVTPFASILQTIILRYKNASHSCPNCNYCWVGDVPYSLKKLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ETC3</accession>
    <name>A0A7D9ETC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Poly [ADP-ribose] polymerase 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A040258</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009152">
        <property type="protein sequence ID" value="CAB4016527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ETC3"/>
    <dbReference type="OrthoDB" id="1729737at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031273">
        <property type="entry name" value="PARP4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013694">
        <property type="entry name" value="VIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46530">
        <property type="entry name" value="PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46530:SF1">
        <property type="entry name" value="PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08487">
        <property type="entry name" value="VIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13768">
        <property type="entry name" value="VWA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00609">
        <property type="entry name" value="VIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51468">
        <property type="entry name" value="VIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1171"/>
            <end position="1244"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="61"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="1174"/>
            <end position="1183"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4016527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1257" mass="142050" checksum="3B7B2C6E9D5AACB7" modified="2020-12-02" version="1" fragment="single">RLTSTQNLLCYLIRNKNGVKYGFTRFYELTVETLADPPRMRDLVHHQSELCEFRKLKCHSCGEMTKTLADMEERMANVEKNIATNMVRKETMVTMETHMKNMQTNMANMETRMANVERNMVGIKTYMEGKFEGLKTALIEGFDEMKDVLVKMEDKIEENPRKVRNTASEMFNWRQRTWSPLQSLPKTREGATSFVHNNHVTIAGGYCFDYVDDMIRMNINPNPDLSMHWISGGGERKGASDYIHEVQLVSSYTVKTLSRMPEPRRDHSTQLFDDNLLIVGGRTTNRYQDSLSSVVLYDIKKNKYKQLAPLPYEAALINMSVKAFNFGKLNKFKVHSVSSELFFLEVQGSRSKVQGPRSSKDHLLLIQCYYRRKTKLTLFILDSSVQSKVQENILCEPTTAISLDEKAVSSEEEEDIPNITTSDIENLEDPLDKVKPGLRFEGDTLVPLQCVHIRAKLLDLCAKVVVMQVYNNSSSKPIEAKYVFPLDDMAAVCGFEAFINGKHIVGEVKEKEEAHREYKKAISEGHGAYLMDEETPDVFTVSVGNIPPGATVLIKITYVAELPVEDENIVFSLPGSLAPWSRDQALKDRTQDVLESVKVDVNNPCELSIHVAVEMPFDIRTLDCPTHDVKMKKTAAKAVIQMKADQDLGTGFQLLVGLAEIHVPRMWVERLPEDSDSQACMLSFYPEFEAEPMDNIEYVFLLDVSCSMKGTPLENAKKILLLTLHKLPTNSRFNVIAFGSHWLELFPASAQKSEESLKDAATFIKRCSSDMGATDIWKVLKALSLLPVKADVHVRNVCLLSDGHVTEEELSLKLASHNHQQSRIFTFGVGSSANRYFLRTMAKVGAGASEYFDSKVKSKWQRKVQSLLSKSQQPVLTSVSVAWQQYDNDAPTPIQAPSQILSLFNGSRQVVYGFVPYCTQATLKAEINGKEISTMVSTSDLSITSGSTLHQLTARALINDWEEGLLAPDHLHHQAVKISRKDYIIEISKKHSVTSKFTSFVAIEKREEGETFDSAPDVEEILDGESVDILGYIGWLEDSEVEDEEEYASFGLFMDFDMPVYSLTTAGDIPVYSKSSHVDEDEDLYEDLLCEEMDEPRFDDVVIDSRVAELTKLAGEISAEVSSQAILTNAISDDYRGRPMEVMSDDDYFFVSDSSDSEWSDSDGLGEKLQSSVIKKKKAPNKKKPPEPEQETYEPLDQPPRHPKKPAVKPPVEIEQENYEPPELQRRNKPVVAMDPEENYEDPNQISGYYYSIRCCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIY6</accession>
    <name>A0A7D9HIY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050584</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000640">
        <property type="protein sequence ID" value="CAB3983655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIY6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="62" mass="7297" checksum="96D2094F0485A613" modified="2020-12-02" version="1">MTQKSSTEKSKTENQKPKNQRSKNQTTSKSKTEDQKPKNQRPKNQRPKIQTPKIKDCRNIKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HK16</accession>
    <name>A0A7D9HK16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC111319433</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042966</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000617">
        <property type="protein sequence ID" value="CAB3983460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HK16"/>
    <dbReference type="OrthoDB" id="5976291at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="434" mass="49903" checksum="4D5D79517D390C51" modified="2020-12-02" version="1">MLCYSILWSHDHERLRRCDQYGEEGMQTMGEMFESGEALAAENEKAELDVLVDVINEHLDYFNEDKDFEKEVEDAVQEIEIPPKHPCPNCTKICKSKGGLTRHIRSKHTLLETNDGKDDNSASTATKPTISKAIVEDLFKKANSKIKDILYGEEIVIICKNLKPSSFCVDVLDKLHGRFIKKSNQDTLVSELYKLLSKEPEKLVDNQPTDKRWSVEQIRIAVNLLFIHLPELLVLATCKSQTSEQTKDIPEVNEREHGPLSYLIGSVISKMFRTSKFRKKSMLESTLTNKEELQDLLQSMKRPDNEYILSLSRGGLWTPCDDLIAIGFEIEKTFRYKTVAHDVTKPIPISELRTNILENPKVKSLWSNIIQECPYLISHDCSKVCLENITFLYLKIRAFSFSRDLINKYRKQNSSNSKKALRKTLQQKSEVNPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HL57</accession>
    <name>A0A7D9HL57_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NmrA-like family domain-containing protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A055378</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NmrA-type oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000600">
        <property type="protein sequence ID" value="CAB3983316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HL57"/>
    <dbReference type="OrthoDB" id="300709at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.25.10">
        <property type="entry name" value="UDP-galactose 4-epimerase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051164">
        <property type="entry name" value="NmrA-like_oxidored"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42748">
        <property type="entry name" value="NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42748:SF18">
        <property type="entry name" value="NMRA-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA-like" evidence="4">
        <location>
            <begin position="3"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00040296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3983316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="32538" checksum="B6950665C0FA6162" modified="2020-12-02" version="1" fragment="single">CRSRVFVIGASGNVGKATINALARNYGEKLDIRAGVRNPVKVAEFTSLQGVTVVRAEMGKRDELIEIFKDVDVLFIVVAGSADRVELTRVTAEAAKEAGVKHILCLGAPVSTYDTIFGKQLHDIECIITDLCLHYTILRLPWFMENYFVCEESIKKSSVVYDAIDPIKRFPAICMNDVGLAAAIVMFSPEKHAGKKYLLVSNRHSYKDSVKAFSEALGKDVKYTQQSYEEAKVAWLQKGFPEWDVDGLIEYCKEVNAGRYEGENDHDFTYITGKQPTSVATWVQQNVSMFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTX9</accession>
    <name>A0A7D9HTX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083139</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001722">
        <property type="protein sequence ID" value="CAB3990764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTX9"/>
    <dbReference type="OrthoDB" id="6015349at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="474" mass="53462" checksum="BDB4A3CD89A12960" modified="2020-12-02" version="1">MKHKNNTVSLWKIIKDTVAYKEKETVVYSKDSKIVAEEFNHFFSSVGENTAIAASQLLQDYNIYPDTPPTTALNRNYAVYESEMFNFDPVSCSEVKNIIMSMPTNKAPGKDKVSMCIIKDCLPVILGPLTDIISGSLTSSEFPQSWNEAEVIPLIKEGDHELPSNNRPLSLLIVVSKICEKVVLCQFTTFLFHNECRKSHQSGNRRYHSSETLNVLVDDIIFILEAMDQKSVTALILLDLLKAFDSEHHPTLLNKLRHIGASPEGAILSPLLFSIYVNELPLAPRHSSLNSYVDDSKMLLSFRVKDATDTKEYVREDLSRVAKCCSELHLLINPEKTKYLLIGTRQQLQNLPTDMCLHFLGETIRPVPSAKDLGLIRDTNMSYDCYITELVSPCMSKLSQINRVSKSFDKETISLLVSALVMNKLLYCSSAWSNTSAKNISKLQLVQNFACRIVTNGKNFDHTHQNCSFDVQVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HU06</accession>
    <name>A0A7D9HU06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037891</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001674">
        <property type="protein sequence ID" value="CAB3990518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HU06"/>
    <dbReference type="OrthoDB" id="5981076at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF8">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="425" mass="48015" checksum="28288014DD4715C2" modified="2020-12-02" version="1">MRQKDDLAFTQLLNRLRTASHTDDDIRCIQSRTITAGDENYPSDALHIFAENAPVDEYNIDRLQQIQSPQYVLKALDQFPPHVRKQDIERVLSKGRSETGGLDTKILIKENARVMLTTNVDISDRLINGQLGTVIKVSVDNVSNKPSTIFVKFDDSNAGVSAIRNSSSSFARENNLVPIKPVLVRIKVRPGKPSSFEMQRLQFPVTLAWACTVHKVQGLTLDNIVVSFDLKKQRYFNYGQVYVALSRATSLNGLHILGTLESKHIRANPKVQKEYERLRETSSFHPHIKTDLCSTETVSICLLNIRSFRKHSLDLRDDPILSKCDVFALTETQLLTSVPNDDINSILNDFSIHRQDHNSDKFLSLAVCYKDTITLCDTEYFTSINGLRFLLSNSGGNTLSCLLLYRKHGGDIQQFIACLHYIITS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8C8</accession>
    <name>A0A7D9I8C8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="3">PPIase</shortName>
            <ecNumber evidence="3">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A061619</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020003507">
        <property type="protein sequence ID" value="CAB3999066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8C8"/>
    <dbReference type="OrthoDB" id="193499at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016018">
        <property type="term" value="F:cyclosporin A binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="entry name" value="Cyclophilin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024936">
        <property type="entry name" value="Cyclophilin-type_PPIase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020892">
        <property type="entry name" value="Cyclophilin-type_PPIase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11071">
        <property type="entry name" value="PEPTIDYL-PROLYL CIS-TRANS ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11071:SF561">
        <property type="entry name" value="PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001467">
        <property type="entry name" value="Peptidylpro_ismrse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="Cyclophilin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00170">
        <property type="entry name" value="CSA_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0697">Rotamase</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3999066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15110" checksum="C285EE10C088EACF" modified="2020-12-02" version="1" fragment="single">KGYGYRGSKFHRVIKDFMIQGGDFTHGNGRGGKSIYGERFDDENFRLNHYGAGWINMANAGKDTNGSQFAIFTVLTPWLNGQHVIFGIILEGMNIIKKIENIDVDGSRPKRDCVIADSGVLPLEKPFYVEKTPVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8G2</accession>
    <name>A0A7D9I8G2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TPA_exp: gag</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041362</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003971">
        <property type="protein sequence ID" value="CAB4000966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8G2"/>
    <dbReference type="OrthoDB" id="10035003at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003034">
        <property type="entry name" value="SAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000571">
        <property type="entry name" value="Znf_CCCH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35558:SF1">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35558">
        <property type="entry name" value="SGNH_HYDRO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50800">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50103">
        <property type="entry name" value="ZF_C3H1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="155"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="383"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="386"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="396"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="408" mass="45626" checksum="344FAD6A8CCDF0C3" modified="2020-12-02" version="1">MPRVSKPRSRVRQQDQRPSSIQPSVEVPNNLGELSILELKNLCRELNFSCAGGRRVLTTRLQNERERLNTNTPQSNIQTVPVNNTLSNSNARESFSADQLAQITQIVLQSISSFFESQHATTTATRVDEQPTIPPPPTPLERLEQLGQFPFLSSSELQQQPTSSHGPVASIQQADGGFTPEIPNKYVRDIESGEFFELAKLLPKNLNKLNVGSDSSDNVGFTISSTGISLTPRKPQVLTNIEEWTTAFNTYMLIIVQKFPNRASELLQYMETIRHAAKTHGGLGWCIYDHKFRYKAAACRTLSWANIDMQLWLRIFTASSTQLREDYSLFSNGPSNKAGAARDGICHSYNRGRPCPLRPNCPYTHRCNRIGCGGNHPGYQCPQSRGENDHNDDHPSQSARSSAKTNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHJ2</accession>
    <name>A0A7D9IHJ2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A058827</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 30 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005218">
        <property type="protein sequence ID" value="CAB4005491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHJ2"/>
    <dbReference type="OrthoDB" id="37721at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037232">
        <property type="entry name" value="NADH_quin_OxRdtase_su_C/D-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001268">
        <property type="entry name" value="NADH_UbQ_OxRdtase_30kDa_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10884:SF14">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10884">
        <property type="entry name" value="NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00329">
        <property type="entry name" value="Complex1_30kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143243">
        <property type="entry name" value="Nqo5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4005491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="91" mass="10939" checksum="A430E084C980DEA8" modified="2020-12-02" version="1">MYGIFFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRWDDELKRVVSEPIELAQEFRKFDLQSPWEQFPLHRDAEPTPLLDAEQNEEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPC6</accession>
    <name>A0A7D9IPC6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">DDB1- and CUL4-associated factor 7</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">WD repeat-containing protein 68</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">WD repeat-containing protein An11 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A048738</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the WD repeat DCAF7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007235">
        <property type="protein sequence ID" value="CAB4011684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPC6"/>
    <dbReference type="OrthoDB" id="24670at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000049">
        <property type="entry name" value="DDB1-and CUL4-associated factor 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045159">
        <property type="entry name" value="DCAF7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19919">
        <property type="entry name" value="WD REPEAT CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="6" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00060896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00071153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00075735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00079586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4011684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="39313" checksum="6EBABD3560E582B3" modified="2020-12-02" version="1">MASLPAQVSGAPKRKEIYKYEAPWTLYSLSWSVRQDKRFRLALGSFVEEYNNKVQVVELDEETGEFSVKGQFDHPYPTTRILWIPDSKAIYPDLVATSGDYLRVWRVSDSDVRLECLLNNNKNSDFCAPLTSFDWNEIDPNLIGTSSIDTTCTIWGLETGQVLGRVNMVSGHVKTQLIAHDKEVYDIAFSRAGGGKDMFASVGADGSVRMFDLRHLEHSTIIYEDPQRDPLLRLGWNKQDPNYLATFAMDAIEVIILDVRVPCTPVARLSNHRGCVNGIAWAPHSSCHICTAGDDHQALIWDIQHMPRAVEDPILAYKADGEINQIQWASTQPDWIGIGYNNSLEILRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQA0</accession>
    <name>A0A7D9IQA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009877</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006912">
        <property type="protein sequence ID" value="CAB4010808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQA0"/>
    <dbReference type="OrthoDB" id="425681at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47027">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47027:SF20">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN WITH RNA-DIRECTED DNA POLYMERASE DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="450" mass="51664" checksum="AAC4385887CB5310" modified="2020-12-02" version="1" fragment="single">FTQIQNALLNKARTDFFKYSKGVQQGCILSPLLFNIDINELATLFDNTSYDPFILPNGTKLSCLLYADDLIILSRSKFGLQKCLDDLHSWSNKWLMEVNLKKTQVMIFEKTNSKKAKPIFNLGKKDITIGKEYCYLGIKMNNNGNFTPALKQLSEKALHANSEVWGAYVKNDFNNWDKLPIEKVHLRFCKLYLGVGKKASNIAARGELGKFPLIINIFKRLFKYITHLNSLSESAIAKQAFLISKDLFTKQNTSYYGKAMDILKASNLNTEITDLESMTTELIQPITKRLKENYLTFWKHKLENSSKLIFYSTIKIDYELEKYLSIIKDSNKRKTLTRFRLSNHSLQIETGRYHNIAREERLCQLCHSGEVENESHLLLTCEAYGDIRVNFINSLKNDLTTTEINVNEPTLSVDIMKSTASDTILKLSKFIFSCFEERLKQLEAGNAGSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J2P7</accession>
    <name>A0A7D9J2P7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase TRIM71-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A015040</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010711">
        <property type="protein sequence ID" value="CAB4019961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J2P7"/>
    <dbReference type="OrthoDB" id="5977875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003649">
        <property type="entry name" value="Bbox_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047153">
        <property type="entry name" value="TRIM45/56/19-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000315">
        <property type="entry name" value="Znf_B-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462">
        <property type="entry name" value="BONUS, ISOFORM C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462:SF296">
        <property type="entry name" value="MEIOTIC P26, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00643">
        <property type="entry name" value="zf-B_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00502">
        <property type="entry name" value="BBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00336">
        <property type="entry name" value="BBOX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57845">
        <property type="entry name" value="B-box zinc-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50119">
        <property type="entry name" value="ZF_BBOX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4019961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="460" mass="52087" checksum="05BCF63D3C60B0EE" modified="2020-12-02" version="1" fragment="single">MASASSESVPVDEINELLTCCMCLETLQEPRSLACFHNFCKVCLGKYVERLRGADKNVEIFPCPTCRSEFTLKSNQDVAELPSNYFIKNMLEIMAIQQKAKTSTACSRCQDPAINHCASCEIFMCKKCSQWHDTWPANKNHNALSVQELGNPESQVKMRRKLCCMKHEDEVLKYYCETCKELSCIDCVVLNHKKTNHSCVAVREIAQKQREALQSSCTTLDEKLSEGKKALNNICEVMKSLEKNAKIAKDQIKEQKENILKIVAEKLDERVKIMNDDVDKVYGELHNELSKQHDEMKDYLDKVQASVSLPKNLLKRGSIEEMLSSQKLIEEKIEKLSNQQPENLAAVNDGSIQYVPNDIGNINVDGIVDKLGHVEGGVSAMCNLKKSSSILKGEIAFMKQLQKWLGEKCKWNLCYRASRDGWSSQDFHKHCDNKGPTVVLVKANDCVFGGYTDQHWESPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6Z3</accession>
    <name>A0A7D9J6Z3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008794</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012404">
        <property type="protein sequence ID" value="CAB4023259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6Z3"/>
    <dbReference type="OrthoDB" id="6104986at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="33627" checksum="7FF31C0ECFC8FCD2" modified="2020-12-02" version="1" fragment="single">MASTHRAPKQWCLSKIETITSFENWRQNLIYTLSLDSNFAPFLAEDATWGKKTRAQPSRGFTDDGEAVAQNSRQTTQQKSIWNTIREHFGFQVTGAHFLDFANLRLETDERPEDLYQRLVAFVEDCLLRANSLSHHGVQLAEDEELSPTVENLIVLTWLRLINPELPKLVKQRYGTELRSRTLASIKPEISQALSSLLEEIHSADDAKIMRTAVSSYRKPGSERLLARPNTRSNRPLKSCPLCKQAGRTNSSHFLSECNFLPDQDRRYMVKARQIAEILEDIPESESSINRADPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8U2</accession>
    <name>A0A7D9J8U2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043016</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012906">
        <property type="protein sequence ID" value="CAB4024227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8U2"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20783" checksum="FDCCFD32F4AD6D4A" modified="2020-12-02" version="1">MLDSESHSRWICIKHRPTTSTLITIPTTRLSYDFPTFFLSNTRSTANKLDEISVTITNNKYDIAIITGSWLSSNITNDLINIPAFLIIRKDRCDDQRVGGLCTYIRNTLDFLELKDLSHPDIESQWFLIKPKRLPRGIDAIVIASVYHPPQNNNRTLRNHLFESLDNALANFLNAGIVLLGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDF0</accession>
    <name>A0A7D9JDF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase II elongation factor ELL2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A007910</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the ELL/occludin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014845">
        <property type="protein sequence ID" value="CAB4027514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JDF0"/>
    <dbReference type="OrthoDB" id="6284217at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008023">
        <property type="term" value="C:transcription elongation factor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000987">
        <property type="term" value="F:cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032968">
        <property type="term" value="P:positive regulation of transcription elongation by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042795">
        <property type="term" value="P:snRNA transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006368">
        <property type="term" value="P:transcription elongation by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2670">
        <property type="entry name" value="E3 ubiquitin-protein ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042065">
        <property type="entry name" value="E3_ELL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031176">
        <property type="entry name" value="ELL/occludin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019464">
        <property type="entry name" value="ELL_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010844">
        <property type="entry name" value="Occludin_ELL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23288">
        <property type="entry name" value="OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23288:SF17">
        <property type="entry name" value="RNA POLYMERASE II ELONGATION FACTOR ELL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10390">
        <property type="entry name" value="ELL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07303">
        <property type="entry name" value="Occludin_ELL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144292">
        <property type="entry name" value="occludin/ELL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51980">
        <property type="entry name" value="OCEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="69"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="155"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="175"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4027514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="35443" checksum="7046061B41215296" modified="2020-12-02" version="1">MTFLVDGVKLKDAIVLTNVLQQVSAMQDNVYVLNRHFYTEVQMDVDTWPGYTDEDRETVKNKIVSEMGSSVDRLSPGPLIAPSLLGINSTKRPLSGGNKPGKNPAGKKPRIAHSNLNTPAKNEGKRAETSPPKLTSQSPRIVPPRRASREKHKTNHEMNKKTPNKDSTKTTKATNGSENNGNDSNNNNCSFSKTDSPLNEDYLLKYPEIKTYEQRCSYKEDFAKEYTEFTATKERLDLVTKQFNDLKEKLKNYPADSHAAKELQEEIFKVYEEKKERWTKDRQRLNYLYPKLNHIKKLVIQYDQAHFGTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JF20</accession>
    <name>A0A7D9JF20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015145">
        <property type="protein sequence ID" value="CAB4027952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JF20"/>
    <dbReference type="OrthoDB" id="5986912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="25300" checksum="3907DB7DB44E1C76" modified="2020-12-02" version="1">MKKKTATEVRRVLKSIFSRHGIPERVRSDNGPPFDSGEYLHFANEWGFKVRHSSPKYPQSNGEVQRAVQTIKRLLKKEKEKEKALLAYRSTPLSCAYSPAELLMGRKIRTTVPTFHKLLTPKWHDLIKLQEHEAQSKLQQQKYFNTRHCAMPLKQIPQGTEVHISTHPENGVVKTSTESPRQYEVETPTGVIKRNRVQLLLNATVFSSTARKNYRAKRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMQ6</accession>
    <name>A0A7D9JMQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Poly [ADP-ribose] polymerase 14-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A067596</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018296">
        <property type="protein sequence ID" value="CAB4032301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMQ6"/>
    <dbReference type="OrthoDB" id="10052316at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010629">
        <property type="term" value="P:negative regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="entry name" value="Leucine Aminopeptidase, subunit E, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052056">
        <property type="entry name" value="Mono-ARTD/PARP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453">
        <property type="entry name" value="PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453:SF67">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23085">
        <property type="entry name" value="RRM_PARP14_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1013"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4032301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1013" mass="113772" checksum="FEC2BD3AD666039D" modified="2020-12-02" version="1" fragment="single">ATSVLNHPEQVINGSKIDVQSYESWLANNKVNSFIISLLHLVCDYWKKLNENLDFGLDQKFFTQEGSSAVDNQEYSQPEDAASAVKTIYVSDIKDSTTKDSITLFFETNKRSGGGDLCEGKEGYKRLSATVARLTFVSSKDAQNVLKKANETRLKLEGNMLKVSTVFEPTHDRSILLANKLNPKTSKETLQNFVESTKSVDVLNVVLGKDGKAIVILKNEIDEEYSNVVSSDEDLKLEGSIISLEFAPLTKGIKISNIPPGTSSDDIKFKFSNPKYGGSKVVDMMLDTNNGHANVYFEKSSVVSELVKNEHVFQEVPLTVIPCYDEFDELQEITTKTTEFCDDYHLEPLVMDYIMNHHEIKTQFKFKSMKYDKGNSTFHFTKEFDDSKLAQEFKNEFLHSFVKEEVKIPEAVFEKVKEAIEERKAEFEGKKVDFSFDGYRVTFIGKKEDVTLEKRSTEATIDRILEEAKFETTELVIEDKNKLKFLKCIDYFKNVMTEFPGVKIHGILSGKLSLVGTAEKHKDVHLRIFQDLVKISEIDVKMSDRQIEFLKRTKCQIVNSVLKKDDVMLMLQTLRGVVGAKGFQAKIMTLKKCDNTEEERLLHIIHTKTSEKCIGVDEETASFLTKSKKLQEFKKGIYDKHQVFIDPKLADLCNIWIVCEKSKMDNAVKELTNLINEKKIGSRKFGPMDPMKFRFLRAHCWGKIKQKEKSCKAEGIAVQKIDSDSLEVKGTQAGRKDMIFFLEKLVGNVHFKNFSLTEPGMKKEMSMHTTTAIISDIEENYNCVIQRETQPEETHAEKTEEATVVADGGTTAGAGGPSMSFVNDKEVKMASGKRITIVVGDLAYEKVDVIVNTTNSNVDLTGNACGRALLKVAGKELLNECKKIGSLQAGQMVSTGPAKLQCKRVYHVCSSAWDNGKGAPILRTLIKECLDQVEKDKLTSIALPAIGTGNLHFPRPEVAKIFFEETTAYLTAHPQSTINDVRFVAYSGDKATVDAFLGLLSNLYAKSLIEEGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K2X8</accession>
    <name>A0A7D9K2X8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cysteine-rich with EGF-like domain 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A049138</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CRELD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026969">
        <property type="protein sequence ID" value="CAB4040571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K2X8"/>
    <dbReference type="OrthoDB" id="6019644at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.220.10">
        <property type="entry name" value="Hormone Receptor, Insulin-like Growth Factor Receptor 1, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050751">
        <property type="entry name" value="ECM_structural_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006212">
        <property type="entry name" value="Furin_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24034:SF204">
        <property type="entry name" value="ADHESION G PROTEIN-COUPLED RECEPTOR E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24034">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00261">
        <property type="entry name" value="FU"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4040571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="22750" checksum="036CE5BB0E66A06B" modified="2020-12-02" version="1" fragment="single">CHESCDGGCHDGSPKDCEACKDGWEESEEHGCTDKDECSSGDVCESNKYCVNTPGSFKCEACDNSCEENCTGPGNTACLACKTGYEMIENEGCKDIDECADESTTCEDGKYCDNNPGSFACLDCDKACSHCSSAGTEKCSACNAGFQLTDKGCEDIDECADASTTCEDGKYCDNNPGSLACLDCDKACSQCSGAGPEKCSACNAGFQLTDKGCEGTKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K485</accession>
    <name>A0A7D9K485_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026223">
        <property type="protein sequence ID" value="CAB4040063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K485"/>
    <dbReference type="OrthoDB" id="7474049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="59" mass="6867" checksum="08AFA9D03908BAB0" modified="2020-12-02" version="1">MPSADAQKVSDRYKRMFHYYVVEQSQKKSKAAPKCRACEQPMKGHKFVTDCPRNERSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KCX7</accession>
    <name>A0A7D9KCX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032511">
        <property type="protein sequence ID" value="CAB4043495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KCX7"/>
    <dbReference type="OrthoDB" id="2419425at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11601" checksum="819E9FFA9AF2B5DB" modified="2020-12-02" version="1" fragment="single">NDDNLCFLWSHVRHLNPKARRATTITQKDREFITNLDYDGIDFPVKISDIDRIERKNSINISVFGYKGKKQFYPIRNSKSAYEDHMELLLLGDGPSDVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KN54</accession>
    <name>A0A7D9KN54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040441">
        <property type="protein sequence ID" value="CAB4045586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KN54"/>
    <dbReference type="OrthoDB" id="5987290at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="81" mass="9424" checksum="A39D10E764AC0697" modified="2020-12-02" version="1" fragment="single">MDEVKIMLETNQFDILAVCETHLSKKIGNRQLQVDGYRTIRRDRPDGRRGGGMVVFVLKTLTAVHLKHLDHEKIEAIWLRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L097</accession>
    <name>A0A7D9L097_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049398</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012808">
        <property type="protein sequence ID" value="CAB4024034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L097"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="73" mass="8444" checksum="AE9D8FA476172816" modified="2020-12-02" version="1" fragment="single">EKGDGKDQVANEILNEHKHKCGIVYCQQRCDTTDIFVANARDTYKKKEKFQAWLDTKALVMCYVSNNCIWDGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L0H8</accession>
    <name>A0A7D9L0H8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012433">
        <property type="protein sequence ID" value="CAB4023314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L0H8"/>
    <dbReference type="OrthoDB" id="8045002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="22"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="394" mass="45043" checksum="6FE9D30BC942274F" modified="2020-12-02" version="1">MQPQFSVQNGNHTIFIVGSSDDAFTKTGFRNWKNATGEKGKLCKHANSRMHMLSVERMQRFKSATPIDVQLNKEAEKIRGKKEQERVENRHIVETIFDVVRHLAKQNSSFRGHDESDDSKNKGNFLEELEFLSKYHAPLRKWMDTHPENVSYFSHVSQNEMISILSNLITEIICNEIRSAKYFSVQCDEVTSHKKAFMSVILRYVTDFKITERCVRLVRVSSLKGISLAEVIIDILKDLKLSLKDLIGKGFDGAANMSGKDEGVQRHLTEAGAEFSIYFHCFAHRLNLVLEQSVETVPPVKAIFETIGDIYRYMEGSPKRHKIYEDHLKANGITSGKMAIHSFSDTRWTARTENLEVVINVYPALLSMFKKQSEQNNDSVATGLLVRLTGRFDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L194</accession>
    <name>A0A7D9L194_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058759</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011167">
        <property type="protein sequence ID" value="CAB4020882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L194"/>
    <dbReference type="OrthoDB" id="5987460at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16807" checksum="819B5D4B8377AC55" modified="2020-12-02" version="1">MYEDVIAVTQNVDCKFRKYIKYLVCLGTTVDILEEEFRDVTAIPKEELWEMFELLLKKIEKTMNCIKELKLPPVKPHIVKATDAGPGVGSSNVEVKYRDVEMARIFNSDRVNRIHRARDDSRQNEAERSNACIDEALVDGGAMSWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L9U0</accession>
    <name>A0A7D9L9U0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Patched domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A084728</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015487">
        <property type="protein sequence ID" value="CAB4028437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L9U0"/>
    <dbReference type="OrthoDB" id="429851at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.10.10">
        <property type="entry name" value="Fibronectin, type II, collagen-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1640.10">
        <property type="entry name" value="Multidrug efflux transporter AcrB transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042480">
        <property type="entry name" value="DISP3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000562">
        <property type="entry name" value="FN_type2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036943">
        <property type="entry name" value="FN_type2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053958">
        <property type="entry name" value="HMGCR/SNAP/NPC1-like_SSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013806">
        <property type="entry name" value="Kringle-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46687">
        <property type="entry name" value="PROTEIN DISPATCHED HOMOLOG 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46687:SF1">
        <property type="entry name" value="PROTEIN DISPATCHED HOMOLOG 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00040">
        <property type="entry name" value="fn2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12349">
        <property type="entry name" value="Sterol-sensing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57440">
        <property type="entry name" value="Kringle-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82866">
        <property type="entry name" value="Multidrug efflux transporter AcrB transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="429"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="469"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="501"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="640"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="704"/>
            <end position="764"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="706"/>
            <end position="717"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="718"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4028437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1037" mass="116634" checksum="FC6CAAF6198CDC6D" modified="2020-12-02" version="1" fragment="single">MPFSRDSYSRLESPIKYGCDETDALCGLQQTNQTDGEDDDLVGYSLDFAEPKHSFVGHVKQSCRNVGRKFMSGLHFVLKVAFGKWPIALIILISYIGLTVGLIVVALTGRYREFRKDISLDSFMVPDIKVSSDFAAFNAAKKQGKSNSPYSFQMFLNIGTCTGNKINPQPRKIPGRLKRSVEGTNFQGKLSWTLDLVYVSKGGDNIFTKKRLREIHDIENSLMKHKNYDKHCYISPQIFMKDEALKKYGNCTPPNSMTNYFYSRGKIYDGQNEELSRPINETLQFLKSKEYFFSYVSDDFSKKDSSNILRAQILFGRPVQGVPFQTSAQKEEFKRFVTTYVDALDELNNNNQVSILYGGGDLFDYLVDNALSSDIRLAAISLGLVILLLIILTFSWWLSLMAVITIMCSVAKAYFFYRVVFGIQYMGILNGVSLFVIIGIGVDDIFVFINTFRQAVDNKDLGSRICHTIYVAGKATFFTSFTTAAAFGANALSPIPAIHDFGLFMSILVSSCWVSVLFIMPPSLTLWHAGIEKLESAMCNRVLSAIGFRRSESLRLPNDIRRFLSGIRNNECHESEHEAIPLVSNNNDDVDDDDDDDEPLLLLDNESTSNQDIQATDSIGFRLQSILYHFVAEPVIKGRVVIFMVYLVILIGSAFLVTKLQVSTEQPKFFKADSNLQRWLELPDVSLKMSGDMLKDLTDIPKQQLPKIPSRTPPITTRPKHTQPRTKTRKVRTPVPQRPTIKPPTTRFKSTEPKTPKLPSTRDPTVTTKKAVVTNALTTPEEETTFPSVAPTEYIEPTHTSKTTNKPRWVTTSANNSSTSSCPHHCIKGRCNTTTHKCDCHLSYTGETCSIYCPVKTMTGECCYIPFKHERKWRYGCLIDTATGKPWCSLTPYNKDGVKEECNKTVANRCAVRTETPNKTCCSFPFVYDMTEYYTCIKPVPGQEVADQDASYCGIQPLVHSPQDLVRCIFTSDTKPTTPPLCRKNECKPVKAPPNEATALIYVVFGVKGIDKTSVDLRHVLKETQGKVVYDKVFSKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LAZ3</accession>
    <name>A0A7D9LAZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069827</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014458">
        <property type="protein sequence ID" value="CAB4026866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LAZ3"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="28351" checksum="AF90C33BAA08259D" modified="2020-12-02" version="1" fragment="single">MINKAQAFDSADHGILLKKLKAYGISGNLYNWFTGYLRGRTQRVVVEGVASEWSPVTSGVPQGSILGPMLFLLFINDLPDIIPPTTSKGLYADDTKLYTAITSRQDCDNLQVALSYVDDWSKESNISFNTSKCKALTISRRKQPIVINYHLGSAELIRVESEVDLGITVTSNLSWNRHITKLVTKANSTLGLLRRTCPMLTNCDARRTLYLSLVKSQLSYATEIWSPYQSLNKISFEKLQRPATRWILQVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LBP0</accession>
    <name>A0A7D9LBP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A034027</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017705">
        <property type="protein sequence ID" value="CAB4031530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LBP0"/>
    <dbReference type="OrthoDB" id="10055717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="8">
        <location>
            <begin position="11"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="9">
        <location>
            <begin position="210"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="470"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="472"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="505"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4031530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="525" mass="60612" checksum="5A04F25B78AFEC67" modified="2020-12-02" version="1" fragment="single">LVKAPVLAHPDPTQPFVVTTDASKVGLGDELSQEDAQGQLHPVAYFSRALTKRERSYPTYDREVMAMRDTLKYFRYYLLGAQVVMRTDHKPLLKILEQKGPFGRRATLIRDIAEFEPRIEFIRGQGNHMADALSRIGWNVKWEERDEDTSKVATIGGSQDEIGPCKDVRLDINDFQLQQERDPTLKPHISTHRNEHGLFTRNHKKQVLLPASLVPTILLLAHDETRHQVADKMLARIEPHYWWPRMKAEVENYARTCQRCAATLAHAHRKAPIHQRPKEEKPFALIEVDLKGPLPRTKEGFDNMVVITDPCAKYAEMHPIRGQTSHVVSYNTAVQTSTGVLPYELVFKEHPRSKFEIITEKISPATVREKTERLRETVSEVFQKAQESDAKLAGKRRERYNSKTSFKSCMGMGQQVWKRNLRAKTFADRWTEPCVVVKPTSVTKISYVVRRNNGTKEEVVHYNYLKPYQIRPVKKPKSRNPPKKNGVGHPALGTSEDSESDSREEEMQPERRYPERIQRLPEKYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LCZ9</accession>
    <name>A0A7D9LCZ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Macrophage-stimulating receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046161</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016767">
        <property type="protein sequence ID" value="CAB4030298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LCZ9"/>
    <dbReference type="OrthoDB" id="5973798at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007169">
        <property type="term" value="P:cell surface receptor protein tyrosine kinase signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050122">
        <property type="entry name" value="RTK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416:SF617">
        <property type="entry name" value="RET ONCOGENE, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00109">
        <property type="entry name" value="TYRKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13717" checksum="68BBF59685B210C3" modified="2020-12-02" version="1">MAIESLQEAKYTSKSDVWSFGVLMWEIETAGMVPYGGVESLELLGYLLRGSRLAKPSETAPEIYKITASCWETDPDSRPSFNELVPILERQVEEGSDYVPVVIDAEHEDGEEDHSYVNYPAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LIV9</accession>
    <name>A0A7D9LIV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042891</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017511">
        <property type="protein sequence ID" value="CAB4031293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LIV9"/>
    <dbReference type="OrthoDB" id="9050231at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="336"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="369"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="379" mass="42232" checksum="FE197F19B4B9E7BD" modified="2020-12-02" version="1" fragment="single">MPDKSNRKRHRSDRTSSPSERSSSKDPENRGHRQDQHKRRRENNTDPGVNEDTLTKILAGVNDMKQQFVAWTTRVTAIEAKLNENSGATSQYSGEFDDDQLSIHPSDSPKEFDNINIVVNNPAIEAPLAGSLPPLDGVEPTNINEITNPNVVVSEEGTSCEFFDPESTAQRRWSPSDPFGKFLEKNMRRRLTLEQVNEIIGESSLPETEACVAPLLDKQILNYIPSSRKKFVEQRDKDLALIQRALLNSAGPLCCLHDRLENQDKISNEELLNTLQQSLCLLGSANHIVTTNRRKKILGAINPDKAQLADRDFPNAGKMLFGEDLPSLAAKHSELSRSLAKNLQKQPYSAKPHSSGGSPAAFVRPANKYNYSEPNQVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LK57</accession>
    <name>A0A7D9LK57_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064751</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020203">
        <property type="protein sequence ID" value="CAB4034535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LK57"/>
    <dbReference type="OrthoDB" id="10649483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="65" mass="7325" checksum="1A313D3D789077C9" modified="2020-12-02" version="1">MWRSALCVRSWPVLSNSARCLPKLTTVNNYSADAAPEKIEVFVDDQKVLVDPGTTILQVSWNRCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2I1</accession>
    <name>A0A7D9M2I1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026961">
        <property type="protein sequence ID" value="CAB4040561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2I1"/>
    <dbReference type="OrthoDB" id="5962731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="329" mass="37253" checksum="D3FED407414A249E" modified="2020-12-02" version="1">MCKLREAKFLEQQMGQLPEARLKPSPAFDHVMIDVFGPYSVCGEVQKRTSGKAYGVIFTDLVMRAVHIEAVFRYDTESFLMALSRFVSVRGWPEIIYSDPGSQLIGAERELTEAWKRIDRQSLHKSGTENGLTWIFGSADSPWYQGAVESLVKSAKRAIHFAINNQRLSVQEFMTVCSEATNLLNERPIGTLPSTDSELNILTPNSLLLGRATAKNPGGWQPNGNNPGKRYHVVQIVTDEFWKKWTELYAPALVIRRKWNTANRNLRPGDVVIIADRNTLRGDYHLGIVQEVFPSQDGKVRRVNVMYKNFQIGEKVQKYKGHNEAVIVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MG51</accession>
    <name>A0A7D9MG51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045917</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038871">
        <property type="protein sequence ID" value="CAB4045339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MG51"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="56" mass="6620" checksum="DB5634FE8E9F2D42" modified="2020-12-02" version="1">MEKVPFQVLTAENGTGLYLERQHMIKCTADIQQRMEHMLPFFRVSFSCQVKLIVIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FKB5</accession>
    <name>A0A6S7FKB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Betaine--homocysteine S-methyltransferase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A074941</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000265">
        <property type="protein sequence ID" value="CAB3980175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FKB5"/>
    <dbReference type="OrthoDB" id="261426at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047150">
        <property type="term" value="F:betaine-homocysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.330">
        <property type="entry name" value="Homocysteine-binding-like domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051524">
        <property type="entry name" value="BHMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003726">
        <property type="entry name" value="HCY_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036589">
        <property type="entry name" value="HCY_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46120">
        <property type="entry name" value="BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46120:SF1">
        <property type="entry name" value="HCY-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02574">
        <property type="entry name" value="S-methyl_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82282">
        <property type="entry name" value="Homocysteine S-methyltransferase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50970">
        <property type="entry name" value="HCY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="4">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="293"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="608"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="691"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="692"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="758"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00034478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3980175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="758" mass="84979" checksum="CAAB7A87EBDCB2A8" modified="2020-12-02" version="1" fragment="single">MSNSSQKTVLERLNAGEIVIGDGGYITEMERRGYATAGLWTPEVNVEHPHAVEGLHHEFARAGSDILQAFTFNANDHLDRAQTGDRNEVNESACRIVKKVSAEYNCLWAGGLSATNIYGHGGSKKDVQEYFKEQAKIFVRHDCDFFIVEYFHICEEAEWAVEVLKETGKPVLASLCITSQGDFKGVPTDECAVRLVKAGADVIGVNCKFDPQESLKAVAKMKEGLEKAGLKAHLMFQPLGFHCPDADNKNGYITLPEFPFVVLPLEPRQLTRWDVHKLTRSAYDLGVRYFGGCCGFKAYHIRAISEELEKERDKIPKTDRKNETMENSSLTRRRRQSCLRVLLLIERSSPRCKMQSELFSPSGLVLPAFLHTYHNNWEQAFCNNLRFSVGRALDLLQDYIVNFKTILERLDAGEILIGDGGYITEMERRGYATGGEWTPEVNVEHPHAGLLNREFARAGSDVLQAFTHHGLWISNLYNTGSSRTEGRAEVNESACRIVKKVAAQYNCLWAGGLCPTSIYGQGGSKKDVQEYFKGQAEIFVRHDSDFIIVEYFYSCEEAEWAVEVLKETGKPVMASLCISTQGDLKGVPTDECAVRLVKAGADVIGVNCKFDPPESLKAVAKMKEGLEKAGLKAHLMFQPLGFHCPDADDKEGYITLPEYPFALEPRQLTRWDVHELTRSAYDLGVRYFGGCCGFKAYHIRAISEELEKERGTKAASSAKHKPFKTMPSSTFGQVQKERNEEYWLNLKPASGRPFCPSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL82</accession>
    <name>A0A6S7FL82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000300">
        <property type="protein sequence ID" value="CAB3980535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL82"/>
    <dbReference type="OrthoDB" id="5946061at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032055">
        <property type="entry name" value="TMEM72"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28474">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 72"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28474:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 72"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16054">
        <property type="entry name" value="TMEM72"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="18178" checksum="11FCEDCD67312288" modified="2020-12-02" version="1">MNEQRRYAFDDDKRISNFVWRKWNVLTNLIGFACTIGIWGIAVTIVDEHQDIGIYLILCGIAMTFLEISLVLDKVFSVCCSEQSLVRQCWSFVLAADTWKRGLLYLGLSVVCYINVKYGWQVPFSGALMDLASIFYFIKAFKANQKAEPYKYKQLSVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWB5</accession>
    <name>A0A6S7FWB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012137</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000487">
        <property type="protein sequence ID" value="CAB3982297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWB5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="15140" checksum="A15F2B0B061D3819" modified="2020-12-02" version="1">MLRIKNERDIRTHRKQKERNEIQAPKVITITTGKSWWKRLRTIGKLLVNELDRYLEYNNLPMTGKKMEKVRLTVAHLYMQIDKDLNAPEHRFEDTSENESKDTESIDNLDKRQNLSLRVAHVPMLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYZ7</accession>
    <name>A0A6S7FYZ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000177">
        <property type="protein sequence ID" value="CAB3979211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYZ7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13472" checksum="88834D685C064F47" modified="2020-12-02" version="1">MDDELSNQSEAISSSVVITENELRGILNVKGNSGKEKISFLEIERNHWKELPETERTAEREQRALLYVRGDGRYCRAKSRRNKVKIKRTTKVIKNYVHRGRGRRRKQSYKVRKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4J8</accession>
    <name>A0A6S7G4J8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001081">
        <property type="protein sequence ID" value="CAB3986848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4J8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="214"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="218"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="28652" checksum="7C250A4337472FE2" modified="2020-12-02" version="1">MYSYETVKSAFVDNDLESIRKVNEYMLKQIGASNTKSMDELLDAIYDTKSSLARNFGAEIFIPAFAHQQQKKCTAIRLVQPRQNPQKGVDDIHILFCHEGDIKPGEAFQPNHFVPLRFHSHKHKRKCSADSQISTVTKKQEMVPIFPKRAITKKQKLTPILPKKASNKADANILNFFTIADKPTVVVNPACQKAPNETFSSATQLDAHKLDEFATPNSTSQHSSTKTQQSTTSLPATNMVQTFAEVKHDFTPNFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4S8</accession>
    <name>A0A6S7G4S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000321">
        <property type="protein sequence ID" value="CAB3980760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4S8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="497"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="509"/>
            <end position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="632" mass="71441" checksum="72C228A86BAA83B5" modified="2020-12-02" version="1">MKARFCDLFSGSSLQSNIHVISNVTIRRFTNTGISLDVNHDTTIIKNCLITNANANCISVSGERSAVQLLNNTFQDNGDSAYATCVLVSFINYNVSFYANGNTFYNNNATKILKLFIRSDVARSVIKIANNDILNNTCENLVDVEYSCPNRPRSLQTISLANNYWRYNQMRSTSVILKRTNVWYCSGYNFDALLMENDFLDNIGGGIVNIQFLYTSGRGIVGIQYRSTSIILSSNFLQRNVLEKSAIVASLQGYNNDISLLHNRFFNNTAEKLVDISGNGPMVVIRNNSMVHNEVDKSIFNLVIGSDIPYLAHYRVAGDTSLLHNSFFNNTAEKLVNVIRTSRKVVIHDNSMMHNEVDKSIFNLVTGQRYVVDSFNFTRNSLIANGLRRHDLSLPYNATNDVAAVICSSRIIPTSINENFFENPLFAWELIFTLSQTFRPHEIDGKYNWWGSKDEKEIILRIFDFRWRNYLPRLNFSPFLASANLSDVFTGETRVNFGNGSVERDRPTSGETSRNVNVNFGNDSVERDRPTSGETTSSIEELKFSAGEPEEMVTTWSQEIAQELSHADKSCAELCKCAKAIDDEFKAAGEAKRPETVIEFEKQLVKQKLEAEFKQKELSVKSFAAVKYRNLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7Z8</accession>
    <name>A0A6S7G7Z8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Histamine H2 receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A042670</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001490">
        <property type="protein sequence ID" value="CAB3989444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7Z8"/>
    <dbReference type="OrthoDB" id="10044919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14967">
        <property type="entry name" value="7tmA_amine_R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246:SF27">
        <property type="entry name" value="ADENOSINE RECEPTOR, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246">
        <property type="entry name" value="OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="425"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3989444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="425" mass="49235" checksum="70C741EFEC4DE541" modified="2020-12-02" version="1" fragment="single">SMKNYRYVIIPGDPRGKFEKHASVSSPSWKREVRPQSYLRERSLPHSRRHDMDLLAIYTIIFITIMNATLVPSLSSPSLRDAETTNTSEHIHVTIRIWVTVLLTVIIVLTILGNVLVCLAFYRRPHLRGVSYYPIVSLALADILCGISAMPAYIAKKHTAGGDKERITCDVFRFTYFFSMYASILSVTVVSLKRFIAIKMPIWYRTLLTKRKMITALMLSWLDAALVSMLPFVWRRENTDELCTYRPSKEWSMMVILLNVCLPFVIMFSCHFYTFHFTIRLFRAKHRTKTTDTAVDAGRRNTIDGISAENNEAILAKRERDLMCTMAIVLGAFIVCWAPSTLYYFLHMVCPHCYRPSFKQVEPVFNAVVKLLTFVNSCLNPIIYCLLNKHLREEIYLSLLKKSEARRRKFKQSKEINRIDAKEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFL9</accession>
    <name>A0A6S7GFL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024109</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001726">
        <property type="protein sequence ID" value="CAB3990788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFL9"/>
    <dbReference type="OrthoDB" id="8046937at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="291"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="303"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="394" mass="44386" checksum="3D89A4ACD9C21DAC" modified="2020-12-02" version="1">MVLTLPQPTIKAFRGDPIEYCDFIQGFEHLVEEKTPSSSARLYYLIQYTSGPVQDLMKSCLSMNLEQGYIKARRLLKERYRQKYRIAAAHVQTLTEGPSIKSEDGNALLQFSIQLTSCTNTLKEIGLLSKLDHHENLKKIINRLPFGMRVKWCDTVDRIIEKEGRGVTIEDVTEFVTAKARAATHPIFGKIVNENKGKQEDNKGKRQFGSRVSGFSTLGEQGKLNKSTCPCNANHWLSRCDKFRKLSLEERKKYVRDNKLCLNCLTSGHFVCSCAKQSFCKVEGCSGKHSTFLHPRSTQTDGENNRERTPPKPPTKEEERENSSSPANNGYVKISSKSSQLNSSLVTGLAIVPVRVKAKGRSEVVETYAFSGSNTSFCTESLLKKLKERRPSYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GGP5</accession>
    <name>A0A6S7GGP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062724</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001273">
        <property type="protein sequence ID" value="CAB3988056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GGP5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9626" checksum="5D26158B5AC2DE83" modified="2020-12-02" version="1" fragment="single">VTSTINNYTSTNNSGETRYKKRQLHKRRRFLILRQKPRPSISINYDKGYLMQPRYCPPKYRCIPACERARSEDDLMINWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHV9</accession>
    <name>A0A6S7GHV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053027</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001860">
        <property type="protein sequence ID" value="CAB3991488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHV9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="19931" checksum="00EB6C1974B3C719" modified="2020-12-02" version="1">MAVVSYEIFQENEGSISESKELGKYISPYDVQDTNEPIELVLMKEKESKQSYKSERQSCEVLTERGFQHKGFRNASEIHESNSRKPLVQEGQSQPSLQYQGLPILDHNSASELRETGTLPFGLPAARSQELLPSLAARAPVTNGSENGENPDILLQCVSQPTTNGGLPHPYPPPLAATAGSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIW4</accession>
    <name>A0A6S7GIW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001825">
        <property type="protein sequence ID" value="CAB3991313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIW4"/>
    <dbReference type="OrthoDB" id="2436455at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11935" checksum="C75B2F0019B08623" modified="2020-12-02" version="1" fragment="single">MGDSKSGWAWINSLLGRKHKNANINELKVNDDIISDDKSITETLNKYFINIGMKMAAESACQSTDALNDQVIYESTALLPKENFHFADITIDSVSKRLQKLNVSKAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJP0</accession>
    <name>A0A6S7GJP0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Solute carrier family 12 member 9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A058582</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SLC12A transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001478">
        <property type="protein sequence ID" value="CAB3989376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJP0"/>
    <dbReference type="OrthoDB" id="2020542at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015379">
        <property type="term" value="F:potassium:chloride symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006884">
        <property type="term" value="P:cell volume homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055064">
        <property type="term" value="P:chloride ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055075">
        <property type="term" value="P:potassium ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1740.10:FF:000013">
        <property type="entry name" value="Solute carrier family 12 member"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1740.10">
        <property type="entry name" value="Amino acid/polyamine transporter I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018491">
        <property type="entry name" value="SLC12_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004842">
        <property type="entry name" value="SLC12A_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11827:SF72">
        <property type="entry name" value="GH08340P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11827">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03522">
        <property type="entry name" value="SLC12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3989376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="874" mass="96923" checksum="DFFAD959DDA7988C" modified="2020-12-02" version="1">MSRPNERINTDGLFNDSSSNVGMDSVGEETPLLTVRSRDRKQHGQLSTFFGVIIPCTLSMFSIILFQRIGYVIGQVGFVVSCALLFVAYFVTGLTTLSVSAISTNGNVKGGGVYFMISRALGPEFGGSIGVIFYVANIVSSGLYLIGFSEAVIGAFGRHTGALTHGDGGIPTGDWYGFLYRSMALLFNLLICLVGAGMFAKTTFFILLGVIISLCSSFVSFFIHKKKYFSEIPAENTLFGNHTPHLLYTGFNWTTFKDNLWTEPTVDYQTGEVPTILIIFGVLFNGVTGIMAGANISGDLKDPAKSIPRGTLEASGFTFLIYLLLVFFASCTCTRPLLVNQYNFLQIINVVPVLTTIGVFLATLSASLSCLIGASRILQAVANDNLLGSFITRLGRGFGRNNEPVFAVLVSGLCVQAVIFVSKVNTLAPIVSMFFLLSYGVTNLACFVLKVSSAPNFRPTFPYYSKLTALIGMLSCFAIMIAVNALYAFVSVAIMIILFLVIVYRAPITPWGDVTQAVIYHQVRKYLLRLDPRQIHVKYWRPQILLLVSNPRSCYPLIDFVNDIKKSGLYILGNVIVDRFDGQAITRHNQEIDHWYNFVRCAEIKAFVDQIVAPSIRVGVQNLLMSSGLGGMRPNTVILGYFDQQEPQDLISQGVWHRAYNIFERRKKEQLHHEIMVNLPKLREKGEQSMRVADYVGVIKDSMLLGKNVCIARNFSSLNKNNIKEPAFIDVWPVNAKSIEHSGEGICDHTYLLILQLSCILNMVSFWESRTKIRLMSIAHGDESEVLEKNRLKCLLHELRIPGEVHIVHDTDGLSSEQPTFHSGNAAVIFTSLPRVPELENLYNNFMRQMSVLSDDLPPIMMVHGNSTVISLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLC9</accession>
    <name>A0A6S7GLC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ferric-chelate reductase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A002966</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001606">
        <property type="protein sequence ID" value="CAB3990126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLC9"/>
    <dbReference type="OrthoDB" id="2419613at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd08760">
        <property type="entry name" value="Cyt_b561_FRRS1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1770">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045879">
        <property type="entry name" value="B561A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006593">
        <property type="entry name" value="Cyt_b561/ferric_Rdtase_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47281">
        <property type="entry name" value="OS09G0557700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47281:SF1">
        <property type="entry name" value="OS09G0557700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00665">
        <property type="entry name" value="B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50939">
        <property type="entry name" value="CYTOCHROME_B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3990126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="548" mass="61484" checksum="969B2E8880ECE33C" modified="2020-12-02" version="1">MAGFMVRIVLYFSLPLIISAQLKWTNLTSVNRGPSPSSRRDIAIGYDSKNKEILVYGGRASGQIFSDTWAFNLNSGQWRELNTSNDIGKRFSVVSGVWNNGFYVATGQVGSKFFDDMWRLDLSTSEWRQLPSGNSKPEKRYGAAGGFFQHDNSSFFYLTHGFASKRYSNTFVYDVSKEEGWKEVFEGTSSYNPNYPHARCLHSGTMLSTHKFVMYGGCLGGGGTGGPCPADDGWTYDAGKDEWTRLPHCASPRTYSAMALLPIDKDSNGKDIVRAVLYGGSETSKSVITVTKAPPNELVIFNPETEEWAKKIVNGTAPPKRSGHAMVTVDNGIIMFGGSSSDDIWLLEGTAMMVENMPDGEECNLVYFSYIQLHGIFMFIGWGVLLQLGMFFARYFRNRDPWWFKMHRALQVSGLIVSLMGFAFAVVSVPFDHFMFAHGGLGLVIMIIGLLQPLNAFFRPHKADESGQKSLKRMIWEIYHINAGRLALLLALINISLGVFLAVVPYTAWVIWFVMFALWVTILIVMEIRLQYHRYKSGEGRMVEMTNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNL3</accession>
    <name>A0A6S7GNL3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Ciliogenesis-associated TTC17-interacting protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A085331</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Plays a role in primary ciliogenesis by modulating actin polymerization.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
            <location evidence="3">Cytoskeleton</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the CATIP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002605">
        <property type="protein sequence ID" value="CAB3995134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNL3"/>
    <dbReference type="OrthoDB" id="6334211at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030041">
        <property type="term" value="P:actin filament polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044782">
        <property type="term" value="P:cilium organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22973">
        <property type="entry name" value="DD_CATIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048777">
        <property type="entry name" value="CATIP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047501">
        <property type="entry name" value="DD_CATIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15505:SF3">
        <property type="entry name" value="CILIOGENESIS-ASSOCIATED TTC17-INTERACTING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15505">
        <property type="entry name" value="RIIA DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21772">
        <property type="entry name" value="CATIP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47391">
        <property type="entry name" value="Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0970">Cilium biogenesis/degradation</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ciliogenesis-associated TTC17-interacting protein N-terminal" evidence="13">
        <location>
            <begin position="21"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00037538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00037938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00039249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF21772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3995134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="39866" checksum="60E6163D2F621115" modified="2020-12-02" version="1">MEESEGVREERQEFEFTASNEAIEYLANITPQDWGAIHLSEMLMTTSGEKDFGEFEIAVSRGEWQGKDCYMIHITEENIVDNVPKVTNIIAHVDKTFTTLEQSIHEYIKIPERTIDIKTLMVLEGGKYVVQKTVTQEDFERRTHETYSSKQMQGFICEACHVVLQRLLLKKGIPENMVFLTFDNQTNLSSMSFKMLDERELEVEGEGVLTRGIQCKLSSIMQQEYIWESFFIPDGRLMLRTEIGSDVTVRQLTLPRTPTPEQPEIITPLKWEEDMELLSQFTDRKEELIDDHNTYIRRHPELQAILADFLQFLLLRKPDDIFDFAKDFFAGMSLAPVLDQTDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVK8</accession>
    <name>A0A6S7GVK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A027840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002406">
        <property type="protein sequence ID" value="CAB3994169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVK8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="302"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="162"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="314"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3994169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="405" mass="45891" checksum="C79148BDE39E71FE" modified="2020-12-02" version="1">MAYLYTSIVNVYATLWKVKYFHLLFLLTKAVTAGQNDLKLIGKWSLPGGETKLFKNTEIILKWTGQTRKKLIIEKDSEVNLVANTLKRLCNGDVFCLDTATACKESIDDKATKQSVAADSEFSTIWAAINGIQDVVTAKLEEVTLAHDIKLIRIEAEVCKVRSNYERKIENLNNKCHELLLKLECKKALEDKVNKLEVLVGNLKADIQDLRNENGLFKLKPRLFKNSTPKVQQKNTGNNDLDLIGTINIPDEPITIVDKQPQDLNKNLELNTSLSVSNKTSRADKGSVYNPQMNSVIECIEARNQPRSNPPRGSHTSNVSKRNSAIPSHPLPKHLVPCPFLRRRGFCLKVPWVTSSIKILNRLIIQPIIRRITRSIVRPIIDQQCPITYNDTLITWAIHLITTYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GX45</accession>
    <name>A0A6S7GX45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010852</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002893">
        <property type="protein sequence ID" value="CAB3996548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GX45"/>
    <dbReference type="OrthoDB" id="8949194at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="245"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="334"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="245"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="267"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="286"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="334"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="362"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="392"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="448" mass="50747" checksum="91E34165E7338BD5" modified="2020-12-02" version="1">MPSMQEEMNIGTNYEQQSTLQNQAETTDTSISTVEHIESKDQQQTTLPKEYNSETIILFDSNGHLLDTNRLCPRSTTSYIRCPTLAKAKDIINEAIFNAPKTFILHCGTNDLEKYHDYNDIVKKTSEVINLINEKYPESKIILSSLLPRMDTHHAQVGKINKVLKTNYSTKPSVLFVEHNNLFPSRHHLHDKKHLNQSGVKIFAKNLKSAFFYLKKNPKQNTPIPNKFNPQKYYQVPSPFGYHNSTFPHPNFPSPSDLSLQQFSSPYLPPANLPSPRLPQPFDFPQSMNRNAQKPSNRNNVPNPTSQSYHQILPPPTIPVAPLANFPPVLPPTNLPSPHLPSPHLPSPHLPRPFKLSHKPSNKNNDNPTCQSHHQTMPPPNLYDPKSFPPLSSLPPPPPVLPPTNLPSSHLPPPPNSPWNFNQQYNKKNNCLPPQLIELIKSLQGYVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H353</accession>
    <name>A0A6S7H353_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="6">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">DNA 3'-5' helicase BLM</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A019332</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020003052">
        <property type="protein sequence ID" value="CAB3997232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H353"/>
    <dbReference type="OrthoDB" id="10261556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-0347">Helicase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="23"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00044542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3997232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15691" checksum="BD9E3B3447BE464F" modified="2020-12-02" version="1">MVIKQTPNRENLIYHIMEKKSNGFDAIVSLIKQKFSDQCGIVYCNQRKDTADVVYHLRRAGINAVFFHAGMDIHSKQASVDSWKSGEAHVICATMAFGMGIDKSNVRFVIHHSMPKDLESYVQESGRAGRDGNSAHCYIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HAB0</accession>
    <name>A0A6S7HAB0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Oxalate:formate antiporter-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A036087</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003700">
        <property type="protein sequence ID" value="CAB3999900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HAB0"/>
    <dbReference type="OrthoDB" id="410267at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052983">
        <property type="entry name" value="MFS_Riboflavin_Transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43385">
        <property type="entry name" value="RIBOFLAVIN TRANSPORTER RIBJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43385:SF1">
        <property type="entry name" value="RIBOFLAVIN TRANSPORTER RIBJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3999900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="453" mass="49651" checksum="2130FF9D8B0CD4B1" modified="2020-12-02" version="1">MDNKSSCRLKAKGISTVCGGLLLHISMGALFFTFGNVSPYFTSYLRYRTSETTLQHSDSMWVISCHEIAVHLTLVCSGVIELKLGARMTSLLGGLVNSLGLLLTYFTVQHSLVAVSLTYGIMFGAGAGIAYSASVRQAMEWYPENTAFVCGLVVAGIGVSAITFNEIEIMYTNPNNLGPNVTAGPNNDKYFGQDEILDRVPSLFIVVGVVCAVMTVIGVLLLFDPPKQDHTMGEKTFFQQLTNTDDEIEDALLPKDRAELHDDVHPLEMIKTKNFWLLWFIALVNGEVIMFLQSLYKAYGETFIPDDRFLALVGSISMVFASVGRILWGIIADRLPIRTTLVLQHVIITALLLTFTLSEKAGKWMFLTWLAGMMSTLSGTTANLLSATAIIFRMKYFATNYGLVCSSMIPGGIIGPILSQNVSDYIGWSGIFSLVAGFSFSGIIFSFLIDVKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTJ5</accession>
    <name>A0A6S7HTJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029623</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005910">
        <property type="protein sequence ID" value="CAB4007787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTJ5"/>
    <dbReference type="OrthoDB" id="6008177at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="304" mass="35822" checksum="822E89BB2C0D119F" modified="2020-12-02" version="1">MKKIERFKSRTKEFMSGFESTHDEIRADEETFIIVHLLKKSDSNSPILDGYFDQLAMLACCTSPHVVKRALDALLNEIFISISNSTRIRCRNILKAEEILRASFLESMKLDHFTAKSHRMTTYAWLITLVLLKHSKEEYIEILPKLREFDKTLETLQSDKDEKLFGGRNTFRYGVYLARESIKRISGKKDTRESLYSSIKKCENFLNSKLEKNEVMKLGKAISDGGNWLDLHVCLAFLQDLPKFYQYQANRKPIILIQMLIADFRERCDSKRVKWKKSNYEWQFETLVYRVMLRLIRTSTNKGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXJ6</accession>
    <name>A0A6S7HXJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003516">
        <property type="protein sequence ID" value="CAB3999102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXJ6"/>
    <dbReference type="OrthoDB" id="5953903at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF16">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18719" checksum="139BDAB4A3DB97C5" modified="2020-12-02" version="1">MMEHVRVVSEFFNFSLKRFALLVKTIEEMLPESSHKRLINICKTRWVARSLSAFIDVFPAVIRCFEIIRDNINKTWNPESVQKAENVRNEVDTKHDLWFEEAESVAEGVGTLPEKTSIASKQQHRANTPADTPSDYYRRVVTIPFLDHLKSQIKNLLYRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HY54</accession>
    <name>A0A6S7HY54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A068423</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006108">
        <property type="protein sequence ID" value="CAB4008390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HY54"/>
    <dbReference type="OrthoDB" id="10070965at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040397">
        <property type="entry name" value="SWAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019147">
        <property type="entry name" value="SWAP_N_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13161:SF4">
        <property type="entry name" value="CLK4-ASSOCIATING SERINE_ARGININE RICH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13161">
        <property type="entry name" value="SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09750">
        <property type="entry name" value="DRY_EERY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01141">
        <property type="entry name" value="DRY_EERY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="2" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="132"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="225"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="132"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="225"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="242"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="305"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="334"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="363"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="397"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="455"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="487"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4008390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="509" mass="60089" checksum="66E98F0E7B11AE88" modified="2020-12-02" version="1">MWHEARKQERKIRGIMVNYKKRAERRRAFYERMKTDPTTFLRIQGSNCKIHIEHQNSDNINMMPWQGDKTVMIDRFDVRAHLDYIPEPSIPQTDKSVNSSEEKKLNYERYRTLVMIEASGATEEGYLKQLRQEEENPRTMAEEKKEKPAPKATIGYTYEDSNLVMNEAELDSGSDSESDADLDIDVAVNVDELDNEQRGDLDNLSVKFGMEPGKYCSLLKADKDEAEHVQKVRDEEEARSQLRGRRAKRDRRSLKDRQRGTVNTSPLSYLRKASPSYEAYRESRSRSRSSSSGGEPTKVEYITEFGSQGSKDNNSTNSDRKKGSQNEIKSKHKRYDDSEQLKVSENYKKSRSERRSRSTSHERHSKYRSRSRSRSRSRSRSPSYKRRSYHRSRSHSPSRERRESRDVYASDKRTKSISQEKKSDKTKSSLSGDKTKLTPQEKMKKRMQLALNKQLKIDKKEERKKKEVKEQEKQERDDDLKEVSKRWKDKKRYRYSRSRSRSYSPEYRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYT1</accession>
    <name>A0A6S7HYT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Proline-serine-threonine phosphatase-interacting 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027533</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006190">
        <property type="protein sequence ID" value="CAB4008650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYT1"/>
    <dbReference type="OrthoDB" id="10255964at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005884">
        <property type="term" value="C:actin filament"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030041">
        <property type="term" value="P:actin filament polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00174">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1270.60:FF:000037">
        <property type="entry name" value="Proline-serine-threonine phosphatase interacting protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.40:FF:000072">
        <property type="entry name" value="Unconventional Myosin IB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.60">
        <property type="entry name" value="Arfaptin homology (AH) domain/BAR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.40">
        <property type="entry name" value="SH3 Domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027267">
        <property type="entry name" value="AH/BAR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031160">
        <property type="entry name" value="F_BAR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001060">
        <property type="entry name" value="FCH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036028">
        <property type="entry name" value="SH3-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001452">
        <property type="entry name" value="SH3_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23065">
        <property type="entry name" value="PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23065:SF61">
        <property type="entry name" value="PROLINE-SERINE-THREONINE PHOSPHATASE-INTERACTING PROTEIN 2-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00611">
        <property type="entry name" value="FCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07653">
        <property type="entry name" value="SH3_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00452">
        <property type="entry name" value="SH3DOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00055">
        <property type="entry name" value="FCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00326">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103657">
        <property type="entry name" value="BAR/IMD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50044">
        <property type="entry name" value="SH3-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51741">
        <property type="entry name" value="F_BAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50002">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0728">SH3 domain</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="407" mass="47552" checksum="0131F184C15F7367" modified="2020-12-02" version="1">MTKTRFIDCFWGSDFNSTAGFDTLCRRVRDGKQMCIDFEEFIKQRAEVEERYGKALLKLARPGENGVEIGTLKQSWDLLRQETENIGRAHVEFSQQLMEQIERGVREFREEQKNKRKPIEDNVKKAQKEKKTCLENNLKGKRNYELKCRDQDTCEETLKKSASQQSSKEEEKLRQRLSRAKTAMENADTNYQSTVKSLEESRKEWEREMAICCNTFQELEVERISFLRNSFWTYTNLGSTNCVKADKNYEEIRKSLERCDIDSDIRLFVSTKQTGGERPAEILYENFYTAQNNQKTGLPSQQWANHPMARVSLPPTPGATPKTNVLDYDDIEDDPTYSTVQDVKKRPKPTVKKVRADFDYTAQGTEELSFHEGDMITVLRQEDDTWWCGEFRGRKGMFPREFVSVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ILL3</accession>
    <name>A0A6S7ILL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Golgin subfamily A member 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A036314</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009575">
        <property type="protein sequence ID" value="CAB4017510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ILL3"/>
    <dbReference type="OrthoDB" id="5978643at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005801">
        <property type="term" value="C:cis-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000137">
        <property type="term" value="C:Golgi cis cisterna"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032580">
        <property type="term" value="C:Golgi cisterna membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007030">
        <property type="term" value="P:Golgi organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024858">
        <property type="entry name" value="GOLGA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043976">
        <property type="entry name" value="GOLGA_cons_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10881:SF46">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10881">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15070">
        <property type="entry name" value="GOLGA2L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Golgin subfamily A conserved" evidence="4">
        <location>
            <begin position="340"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="24"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="470"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="107"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="471"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF15070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4017510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="491" mass="57068" checksum="C65A8E84809730DC" modified="2020-12-02" version="1">MVRSQVEIMADQARLEKIASARKKLKKFQQKKGPPSTPPKLPIKPAEVGPSQTLEENEFEVVNAPTVDQTLKNGSYSSPSVDKIKQMLNGFAKQEQVNGEDPIISEIDALEQRNSDLERNLTSHKRNNEQLGNHVNEQRKQIIQLQEQIKKERTELANRQLLEQRSLKEQLEVHIQTIGILVSEKSDLQTTLAQLQKKFKTKDNESSELSSRVQKLRQRTAEHEREIATQKSKLERFSEENNEIRKDRDRVQTVNYTLNREKEDLQQQSSEIKQKLQGKVNECLSLEKSRNETAKKLNETQLLIQQLSNNPSASAVQDLTKTLREEKEELADRLEKQTASLKRLAADKGQTIERHNQEIEQYEFKLQKLIDLNEQLESHRLQWTEMQQEYEESIMELRKSLDELNDQEASNQSEATRLAAQEIQKLVEEKQNLAKFLQQQSDMNDKLNRELAEDETKIAELERMVTNLSRESQDKRELLESIQSDKETISK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INC9</accession>
    <name>A0A6S7INC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Leukocyte receptor cluster member 9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059279</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010271">
        <property type="protein sequence ID" value="CAB4019043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INC9"/>
    <dbReference type="OrthoDB" id="10263155at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1000.10">
        <property type="entry name" value="Zinc finger, CCCH-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042653">
        <property type="entry name" value="Leng9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040459">
        <property type="entry name" value="MJ1316"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000571">
        <property type="entry name" value="Znf_CCCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036855">
        <property type="entry name" value="Znf_CCCH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46729">
        <property type="entry name" value="LEUKOCYTE RECEPTOR CLUSTER MEMBER 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46729:SF1">
        <property type="entry name" value="LEUKOCYTE RECEPTOR CLUSTER MEMBER 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04457">
        <property type="entry name" value="MJ1316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00356">
        <property type="entry name" value="ZnF_C3H1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90229">
        <property type="entry name" value="CCCH zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50103">
        <property type="entry name" value="ZF_C3H1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="33420" checksum="DD353AD4EAE1491C" modified="2020-12-02" version="1">MASVDCNSEQSASADISSDGHIPHVKSSFGFTVYYEMSDAPDKLSEVIVINDKSNERLDFLEECLTKRKLDLSQADFAESLLKEAEKIFEHGDDTSILKGLDGTNTEKSEEMGATICQYFLKGKCRFGDTCFNVHEKLSTEDTIEDESTNTFENKTNNIKNKLQKPKTNIVESEKSRKKPPMKTATDVINRIQWDEKLNPEHFTVGYLDRFLGIVENSFNSFDWEDVTSVDPTILAIPKHRIQYFKYCDEIVWDKNKRLDCVFGSTGSGMTIVDVIENSQQKQETLNDTQNVDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INQ4</accession>
    <name>A0A6S7INQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TNF receptor-associated factor 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A007431</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011147">
        <property type="protein sequence ID" value="CAB4020835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INQ4"/>
    <dbReference type="OrthoDB" id="7873042at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049342">
        <property type="entry name" value="TRAF1-6_MATH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21355">
        <property type="entry name" value="TRAF-mep_MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00061">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4020835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="39227" checksum="84406A3216E62B0B" modified="2020-12-02" version="1">MTTNGHSGYPLKWFKDENVARNSFGCAFCLEVLKHPVRVRNCGHQFCALCIDDILKTDSRCPSCRIRISKTKVFKDYAARRLIKKLNVNCCNEGCSWVGKLHSLEKSHMKSCNVLVSKADDNTAKHLDVAKYEAKCCETLLLNVSTLEGLRGKEVKKPRKQMASLGTYTKLQPPTHIQTLERLRRNPIVTVALKIRNFTRKLRLAKSSNRYGRIDSKPFYTHHGYRMKISIYLNEGPRRPRGYKGYMGIYLCLMQGDHDNRLKWPFDKRVTFIVVDQQNSKSKVDNFEITMIPEGQKEFNRPLVGKNEGLGNPQFMLHSTLRTREYVRNHNVYIAVAIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRH4</accession>
    <name>A0A6S7IRH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A004711</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011676">
        <property type="protein sequence ID" value="CAB4021875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRH4"/>
    <dbReference type="OrthoDB" id="5972980at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48257">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48257:SF1">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4021875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="893" mass="102481" checksum="B64076C8170F21E8" modified="2020-12-02" version="1">MPGENCAFYGCPTSRKHGISLFKIPSARADESKEMSDLKNNTRQAWLNLILRTRESTPELKKSIEAKNIYICERHFKPECILTYPKRKVLVTGSNPTENLPTKSHDKVTKERRTLVRASVADTPSTSSSDVSPTLTLEDLQKYMIGKHILPWTVKARNEEGAKFEYYDESHSIPKFTIGVNERLEFTVYVYNWPIPDNHSIYQLERKKCLKTLDDAIEMLKFVTNSNLCESLPQDHDVVRTVAVDPTWNEKLSHFTQSTVIRHSVPKSICDTHFQSDVTFRSPNCNVILDNISKEQCKPCSMTSSTLKKSEARKRKVSSVPAKSKASLAACGPEKLVATVKASRIQCKQLEDKVRLLEERIEKDGVGISDALENDILKIMGGQNLECTPHMKFFWEQQMKLLQTRKMGRRYHPQVIRFALSLHGKSAAAYRELQESGALILPSERVLRDYKNYFKPKAGINLENIESLREKAAALTGIQRYLVLVMDEMKIQFNLVFDKYSGELIGFVDLGDPMTNYASLGEEDVMATHALAFLVRGMCSDINHVIAYYFTENVTSNQIMSMFWKVVGVLELSLNLWVIAAVNDGASPNRKFFELHSQYVNDSDCDVVYKVNNIFATTRFIYFFADACHLMKTARNCLYNSGSGSCSRLMWNNGRYLMFKHIADLFYSDQEFALHTLPKLSLDHIVLTSYSKMKVKLATQVLSQSVATALEEKDDEDVLGTAEFCKMMNDFFDCTNVRSLTEHVRRRNHFIKPYTSQDDERFAWLKDVFLQYLEKWRESIMQREGVYTADERGKMFLSLQTYKGLTIYVHSHIEAIQFLLAEGFKYVLSERFMQDVLEDYFGHQRAKGGRADNPTAQQFGYNDLTIAAQRDIAPSIERQCWWKIREAEVESSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IW84</accession>
    <name>A0A6S7IW84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068824</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012594">
        <property type="protein sequence ID" value="CAB4023625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IW84"/>
    <dbReference type="OrthoDB" id="16464at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17354" checksum="303F1203650EAA85" modified="2020-12-02" version="1">MNTVHVDDVSRALWYLTTNGNNGEVYNLVDNGETTQGIISELVCELLGIEHDYHGTIVSNFARLNMTDIVDESNEKHLEPWSEACQRDNIENTPLSPYLDQELLYEKHLSLDGSKLEETGFKCEHGKLTTGNLKEVLEDYVKLGLFPPSLAQTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J016</accession>
    <name>A0A6S7J016_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012601">
        <property type="protein sequence ID" value="CAB4023638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J016"/>
    <dbReference type="OrthoDB" id="5987682at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="127"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="429" mass="48686" checksum="998FABA9534B01AF" modified="2020-12-02" version="1">MVHNTGEILELNLKTNNTRGKTKTREPTLRPKYNIPLLTVSNFNFIPERVKDVERVVVQEECYTAQSSQFFGGPSPTLPGQVREVSLNDEISREDEMIPNPNVLVLGPESQIVGMIELSEGLKLAHLNMRSLRNTAHFMQLKELVRANRIDVFTISETWLNHTVTNKKLKIDGYKLHRLDRLYKKGGGVCAYVRENIKSSVIKELTQISDTSFHQLWINLQYKKTKSLLACVCYRPPDWPLDCFENSLKPQYVHALSMRKPTIIMGDLTCNMLNTTSRECKSLTEMTSELNLKQIIESPTRITDISQSLIDVILVSSPNTVRDSGVLNCTINDHLPVYVTLKLKLTKPPLTHIAVRSYRNYDPELFAADVAYKSERLLSVKIFDDVLQTTLDSHAPIKTLKVSGRPCPFVTPEINGTDGQERSTTRPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J2R6</accession>
    <name>A0A6S7J2R6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014083">
        <property type="protein sequence ID" value="CAB4026225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J2R6"/>
    <dbReference type="OrthoDB" id="5961127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15103" checksum="AC6BAC0F95A76D27" modified="2020-12-02" version="1">MQSIRSESTKWRITCCYDTTDDVNHRDYVRGSLSEVDLLHFNGEECVKVDHISVRGQSCRNCTAYAFQKDAIFHFPSKKGNCEFQTNDYKNCSANETNGIMKFESNFGFYGCANAQHHCSANVNATTQTWFGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5G4</accession>
    <name>A0A6S7J5G4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A066053</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006067">
        <property type="protein sequence ID" value="CAB4008248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5G4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="342"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="302"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="308"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4008248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="723" mass="79116" checksum="3D098C9C2084E4A1" modified="2020-12-02" version="1">MSLKYTVVLVWVIYLCYKVVITGCEVVLVNRNVTDSFRFGKDGCTNDERVCTSSATCQSDGSCLCSADKPNFRNPATRSGVDKSYGCLDSESIRFGLVGGSENCSFGPFQLLPYSQNKPARKFSGSDNQRMENCYLFYLPQAKFPNNATEIELQRFEKSDVDLNVSNNDLYFKWKRSVPNLKGTIITFSLQCVAKNENARRTTHQITCLRAKVLGTWSADAVSESTKVSVSTEPTITSTKPKSSQTTTISTSSVLTGPKKVSLSTDARVTSIHPKSLQITTKYTSFVAVTTAETRTIPTGLTPVVTKEPTTSALNSTGTMLPTTSTRSSEISSRDGDSSSRAIIVIAVLAAVTLLIILVAIIWCLCKRKKRYSLRKHSSHGSSCKEDGSMGMKQFNYTESNLRGPDDHAYATPNVQTESTVVKANSAYETPDSQFVVVEANPAYEIPDNQFVVVQAKPANEKPDSQSVIVEANPAYEKPDNQRVIVEANPVYEKPDSQSVIVEANPAYETSDSQSVVVQANPVYETPDSQSVIVQANPAYEMPESQSMVVEANPAYETPDSQSVIVEANPAYETPDSQSVIVEANPAYETPDSQSVIVEANPAYETPDNQSVVVEGNPAYETPDSQRVVVEANPADHKSKEANIASCNPEPGYESVDMKKRVSNDSQVDPVYATPDVKKREVDRVNSYPDPGYELINRVNSYPEPGYETPDFKKKEINAATAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7A5</accession>
    <name>A0A6S7J7A5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin repeat domain-containing 60</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015132">
        <property type="protein sequence ID" value="CAB4027925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7A5"/>
    <dbReference type="OrthoDB" id="10258888at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd17039">
        <property type="entry name" value="Ubl_ubiquitin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039323">
        <property type="entry name" value="ANKRD_45/46/60"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000626">
        <property type="entry name" value="Ubiquitin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22677">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22677:SF4">
        <property type="entry name" value="USHER SYNDROME TYPE-1G PROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00240">
        <property type="entry name" value="ubiquitin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00213">
        <property type="entry name" value="UBQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50053">
        <property type="entry name" value="UBIQUITIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="224"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="443"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="647"/>
            <end position="667"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="228"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="251"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="261"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="291"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="807" mass="92021" checksum="53A7B6C9CD10CF46" modified="2020-12-02" version="1">MKKKVENSTKTEFIHLFISLPANDVYSLRDISTKLLVHQIKSKIELRVGIPGHLIHLYFMNNELADDKTLQDYKLKHGCILRVRLHKTWLGLFLACSKGDTFEVFENGVQALNDEPSSDFDVELWNKLVIKRATFALFMATYHGYLSLMLELLNSSAADINGCTVFGRTALHIAAFQGFVGCVSLLLSEGAESSALDVFGKTPLQLAYINRHIYCQKRLYMHQTSRSGGDESREKAGDGRPKTAPHEMMKNFHRNQRTKKNMSSQVATGATRGETSAESFPSITTTTKDTSIQSQNHSSPSSSYELPVMTIESPKTHHPVGEIPSQFSAPIVRAQTAPIRREGSSSRSSTSRGIRGIDAILRTAQDDIVGEYHNIDESIADINVTTLKLSLPREDIMPTNFETKQPELDSITNNYNFLGEARAPLPPSKKMLGFVLKAEENRNLNQEKKTNGCSGSEQQDDKLLTATTNGGPIAKRDQEDERLWTLSSNGYPEPNQQPSDRLWTPPSYDSVLEKTPSLHRKLGPSLSYDAWLEKKRQSATEVKTERPASATLKSKVGREMDVAAFKQWLEGKKKFRKRSKSETLTIEHHRAGSGVPFEEWLRQKRQQLNESSMESPGQITEKADSRPKQALLGGKTFSEWLAEKRQPNQTCENVKTDSKRNRSHSGKTYREWLKDKNKEKQNEAILQDNFAMLELQKKALVEEQRRLNPRVKTFDEWFEEKRAQSIIELIQSKNVPNEAWLLNSKTKFPEDACLVYDMWLTSKNMEEFKREERLYEEMVEKWRKKEQERLQVRRSILSKLSQAKKDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JM64</accession>
    <name>A0A6S7JM64_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl- -binding domain-containing 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087664</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017475">
        <property type="protein sequence ID" value="CAB4031254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JM64"/>
    <dbReference type="OrthoDB" id="10254927at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000062">
        <property type="term" value="F:fatty-acyl-CoA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24119">
        <property type="entry name" value="ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24119:SF0">
        <property type="entry name" value="ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="85" mass="9451" checksum="19750B0F2D1F93F6" modified="2020-12-02" version="1">MTLLHWACDKGYQDIVEYLIKTKCDINSQDSEGQTPLHYAVICEFESIVKTLLSAGAKTNLTDNEGNVPSNLTSQSKFLELLSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JUP1</accession>
    <name>A0A6S7JUP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcription factor MBP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A036699</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022125">
        <property type="protein sequence ID" value="CAB4036516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JUP1"/>
    <dbReference type="OrthoDB" id="5951120at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24198">
        <property type="entry name" value="ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24198:SF165">
        <property type="entry name" value="ANKYRIN REPEAT-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13857">
        <property type="entry name" value="Ank_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="309"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="367"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="584"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="664"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="742"/>
            <end position="911"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="952"/>
            <end position="982"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1036"/>
            <end position="1091"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="316"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="584"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="668"/>
            <end position="680"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="760"/>
            <end position="771"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="775"/>
            <end position="794"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="801"/>
            <end position="815"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="816"/>
            <end position="832"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="853"/>
            <end position="863"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="865"/>
            <end position="876"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="884"/>
            <end position="896"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1038"/>
            <end position="1054"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="1055"/>
            <end position="1070"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1080"/>
            <end position="1091"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4036516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1200" mass="131085" checksum="50613BE0CD939304" modified="2020-12-02" version="1" fragment="single">MVSPESFVIHRQCTPFCEGRCKYAGQHHKILVAVINCVDERGYNKFTRTITRFMKKGWKIDDPIEDPDPEFRYPLVHWATVLGNAMVLKWCVEQGLDLNKRWGQRSETALHRLMVCGYSALRENSGNILKTFKKLVKLLKVLLQSKDDNKDLPIHVAAKVLVERPLTSDSRFDRIYTEMLKILVRITCELDMGLLNYRNIDGNTVMHIVAQHDKGAEILQLLIENGADCDLPNSEGLKPIDIARAKDATDIIGVLSKDDEDQNSSKNEDDLALEEIGDIDIIYIESDDDLDKSNNNDDKDEQYIRNLLERVKSEPDDGNDVDDTNDVDDPDWNGTDLDASTSNDTLFTMDEDSYDIDIPFGSLNEARSTLRRNDSPLDGNSEKTSSNRKRKFSDKGTVQEPKAKKPKAPNVQGKESKAVSPKLEIQLNMPKFKSLKRKIRQEATRVEKAAKSLFPINSSPDLTTQTPNEEILQTKTRSLSPYQEEPTLVTGILTKHVHSDSEVVGNTLATVVEKSNQESKSGLSSSAIAGALPGMCTDEQGEVQDEFMNDLSRVKEPLTTSKAAKHMFPSPDLTAKIPHDEIPQSRTLSSSQEEFVPQTPADSQLSFSSSDEIQCAWQRLRGKITGRGSLKGNLSQLGELFYNLKPVGTRIERPVGTSTPTAVAIEQDSSSTSPSTSDSSIPGPLSIEQHLSSSSVLSMEQHGTSPSPVLMEQLQSNRSSPSPPTDQHRSKKRIEDVITNLRERQQAGIRNTTSRRESCESLSSSENNSIEGQAKNKQSDSITEQKATTKTSLQIPAAKNDLTSADGSDSTLEQQTGVESKSSSGSSTPVTSNDEMNGERVLPPPEQHLGKSTEVSQVPNSNVAFKKEVDDSKCSGKLDGVLATGQTQPTTGTSVDSHAGDSEMKQTAASDHINNIVGDKLKKRPRIPRNALPTQVQAGSYRAMIPVGAFTSTNTSEKPADGASTSTGTSGNGSGNGGDIYQQLSSLTGEVEKLCKEVSNAPPSAHASISSNSTNSSYDPLFNVIDKFCEEVYGISRGPERNRETRGETPKQAEDSGQSNVSQQQGVVDSTPSRKCEMASTPSQVQDQATVPTRIQSTVKSQVQAEVDVTVKIKQEPGLEYSNTQNHGQMMAITHGQILGTPTSQTQGVQGQTQAASQVPIHTTQVVSTQIQPTAIPVQSQVPSLVTQQPLQTTITVQSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0K3</accession>
    <name>A0A6S7K0K3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Xanthine dehydrogenase oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089386</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023397">
        <property type="protein sequence ID" value="CAB4037717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0K3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.50">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444:SF3">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="CO dehydrogenase molybdoprotein N-domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="8752" checksum="BAC74AF010F01D0E" modified="2020-12-02" version="1" fragment="single">FYLTLLGEKASERVRSAAVPYVRPISSGQQSFGTTPSEYPLTKPMTKTTAKLQASGEAQYTDDILKQEGELYGAFVTTTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0R3</accession>
    <name>A0A6S7K0R3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016998</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021704">
        <property type="protein sequence ID" value="CAB4036104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0R3"/>
    <dbReference type="OrthoDB" id="76385at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="26295" checksum="A66C02A03E99C7B1" modified="2020-12-02" version="1">MTLQEIINATNADAALTALHDAIKTNKWDSPIVKPFKAVKTELTSTTHGVILRGTRVVIPAALQQRGPKLTLQLNDSLGKALKTATLEGRPWKQELNRFLLQYRTTPHCTTGVPPSELLFNRVIKGKLPVINSKRIVNYHKEARDNEKTRRERNREYANQRRNTRKSDLQVGDYVLVRQEKKNKLTANFNHKPYNIYGIITIKKTGSEILAQSKDGHIVKRNVSHYKRIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K3N6</accession>
    <name>A0A6S7K3N6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012012">
        <property type="protein sequence ID" value="CAB4022501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K3N6"/>
    <dbReference type="OrthoDB" id="5988101at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15086" checksum="AE5064A1402C830D" modified="2020-12-02" version="1">MGASWIRLSVRVQLCKPEKKPCLNALGGLSIIQNGKIPTFIDGEIKKKVFSAEGTNEACISELQQGLKKVGIYQLGCKLPIFLDLLKPTSTQTLTMRSLTSLLKTTFSEEGSNKRQFENQIYAEFLKYLRQVASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4K8</accession>
    <name>A0A6S7K4K8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059364</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026692">
        <property type="protein sequence ID" value="CAB4040365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4K8"/>
    <dbReference type="OrthoDB" id="5988824at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24219" checksum="EAEFCB3FB44467F1" modified="2020-12-02" version="1" fragment="single">LVGKIEEYELILMFRVAVCCSCLKKHAKKFEENQGWIELENQEKDKMTAACLNDQSRLAKKVAEMTMSNVKHWECTPVSPTTMPVPAEWTPGQWTGEEEDSEEECRLGGEENDSLMFQYNEALSPLSEKVNVRNFTPLTFQLNTTWEEATQKEKEICIDKAMEGCKIVCEVIAPKAGDELLQSCVQLPDQEIENVSDELITLMQAHKNAPTRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7U1</accession>
    <name>A0A6S7K7U1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069918</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028410">
        <property type="protein sequence ID" value="CAB4041495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7U1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26341" checksum="861AD29AC6F05582" modified="2020-12-02" version="1">MTTNDYGVVTNMVTISEEGMQTMGEMFESGEALAAENEKAELDVLVDVINEHLDYFNEDKNFEKKVEDAVQEIEIPPKHPCPNCTKICKSKGGLTRHIRSKHTLLDTNDGKDDNSASTATKPTISKAIVEDLFKKANSKIKDNLYGEEIVIICKNLKPSSFCADVLDKLHRRFIKKSNQDTLLSTSELYKLLSKEPEKLVDNQPTDKRWSLEQIRIAVNLLFIHLPEFLVLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCB0</accession>
    <name>A0A6S7KCB0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056644</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025656">
        <property type="protein sequence ID" value="CAB4039620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCB0"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="325" mass="36453" checksum="F974CE17DEA779C3" modified="2020-12-02" version="1" fragment="single">MDELSSVAEINDPDLICISETWLDPSIYDGVISIGSNYTRYRKDRGTPGGGLITYVKTAIPSSRLFDMEEEGKEALWLLLKSQRLPRPYSCIVMVAVYYPPVGLRLSRTVWDAVHEAEDVDDKVSIFNGVISQALDGRMPLKSIRLHPTDKPWMTPNIKAKIKLRQRVFTRGNMSQYNLLSAQVEDMIRKAKSNYYQNKAKTFRTSDPAKWYKAIYNLSGVSSQHEGLIVNSMGSEAALAEKLQISFTEPWKDLITTNIPQLDEVESLLKDYPPPLPSIGQIKCVLNHLNHSKATGPADGVPAWLLKRFSSVLAPIDIITASIKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCH1</accession>
    <name>A0A6S7KCH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A053082</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025718">
        <property type="protein sequence ID" value="CAB4039680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCH1"/>
    <dbReference type="OrthoDB" id="5986544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="115"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="268"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="490" mass="56799" checksum="C9BC226AE84FE092" modified="2020-12-02" version="1">MDVCGHTTLLCEYKEKMYVLRFYVIDSDECPILGLKACQELNLIQRVNEMKLTTTESIMQEYADVFDNKTLGCLPENSCRYTQYRCRYMQHLGVIEPVEEPTDWVSSMVTITEPNKTRICLDPRDLNNTIKREHYPMPTIEEIVSRLPQATVFSPLDATCGYWQIPVDEKSSKLLTFNTPYGRFRFRRLPFGISSASEVFQRTMNQLFGDIKGCEIIVDDILIWGRDEVEHDDRECLLKVLERARKNFVAQNTSVIRDLIKERNEWTWQPEHQKCFDDLKTACSSQPTLVYYDVNKPVKISCDSSQYGLGAVCLQDEKPVAYPSRTLNDTEKRYAQIEKDLLEIVYACERFHQYVYGRTVQIESDHKPLESIFQKPLYQSPLRLQRMLLKLQRYDLKVTYKKGTQLHIADTLSRACLNNTDQETEFEDLTVHPTIPFSAEKSEQLKAATLADPTLTALRKKILEGWPNEKRAVDPSITGTSLKHFLSTTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCJ1</accession>
    <name>A0A6S7KCJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052564</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031565">
        <property type="protein sequence ID" value="CAB4043125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCJ1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="13"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="12999" checksum="87BF126E36E1A3FA" modified="2020-12-02" version="1" fragment="single">MASNFIDEDPSTSSVISLSSQPNSSSFQNSCTSLVSEIPVEGSFDVENVCPNSNVEGNVDINQSGNGWTRSLINLPAFEYAFIHEHLVENSETMPDNRPTGAHRHKKMGYRLFKENY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFX2</accession>
    <name>A0A6S7KFX2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Eukaryotic translation initiation factor 3 subunit B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A089118</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028670">
        <property type="protein sequence ID" value="CAB4041651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFX2"/>
    <dbReference type="OrthoDB" id="10250414at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005852">
        <property type="term" value="C:eukaryotic translation initiation factor 3 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031369">
        <property type="term" value="F:translation initiation factor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011400">
        <property type="entry name" value="EIF3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14068">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14068:SF0">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4041651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11753" checksum="267E0D2EF72F7D36" modified="2020-12-02" version="1" fragment="single">YIFIEYANEKDAAQAVKIANGYKLDKHHIFIVNPFSSFDCMLDLEEDWSPPEKEPYEDKGNLRSWLLDADCNDQYSVIHGGGEKVDIYLNTSTEPVLLKERP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGZ3</accession>
    <name>A0A6S7KGZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase recombinase xerD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061398</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031980">
        <property type="protein sequence ID" value="CAB4043288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGZ3"/>
    <dbReference type="OrthoDB" id="6380429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="22505" checksum="2D1BA9A543E98817" modified="2020-12-02" version="1" fragment="single">MPRYINTWDVNAVTKYFESCSANDKLTLKQLSKKLVVLLALTSAERGSELIAHDLRFRRFHPEGVSFNLPELTKGVRTGKPLKISFHANFPTNELLCPVACLKEYEKRTKHFRPSASKEPNKLFLSVNKPHKPITSSTLSHWVKDCLLEAGIDNNVFKAHSTRGASTSAAARAGISLPEIIKLGDWTKDSTFKRFYYRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KKG7</accession>
    <name>A0A6S7KKG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PHD finger 24-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073688</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015005">
        <property type="protein sequence ID" value="CAB4027762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KKG7"/>
    <dbReference type="OrthoDB" id="9978298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="20458" checksum="3CD9899B60F7E7F1" modified="2020-12-02" version="1">MKIHPDQEYRRVVHFKVMDRNSTGTIDWWEFVNYEAVKVLGRRDKRSLSKLLSKREIEQARDMFHSYDRDEDGYITQYEAMKAYERWFGQLKIPNDSSDAAAWNSNSSYLQNQEVNGHIDMHMKILMDADTDKNKLISWQEYLQDQALYLLAARPNYYIPPNLQKTKKKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMK9</accession>
    <name>A0A6S7KMK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015410">
        <property type="protein sequence ID" value="CAB4028332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMK9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16086" checksum="40B8C277502C2110" modified="2020-12-02" version="1" fragment="single">MNEAIQSEETARILQNQRTILEQNAKILAFQETFTKENGSTANAKSVVPAIVKHHLRTFFAEISKVIEPKCLTVNPKVSGPNLSADESSNGENYGVVDMHPDGNAPYQDEPLAIVGQDYNFRFEEDRDGISPETLEARFTKIYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L1I4</accession>
    <name>A0A6S7L1I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018302">
        <property type="protein sequence ID" value="CAB4032312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L1I4"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="531" mass="60150" checksum="2C2A856328F28EB4" modified="2020-12-02" version="1">MTAYIKKEIKARQKAYTTGNMTKYRQLADKIITLIKKAKAEFYSSKVKSKRKHDAAKWHRTISQLAGFEGDNLNNNLISDSTPDTAEILQNIFTKPWSKLPETIIPSLEDVASSLRQENPPTPSIGQVKTALKQLNSKKATGSDGIPAWVLKRYCEELAPIVHDIICASIKECEYPTAYKHALVIPVPKVNPPRDIENDFRQISILPQMAKVLEKLQLKLNLPSSRINDNQHAFTSKRSTVSALTNISQNWFNVTDNTHSAKNGVHALFIDFRKAFDLVDHGILLRKLAEMNVTKAFWLWTRSFLEDRRQQVKLAGTLSSVKPCPAGVPQGSVMSPALFNIHINDIENSIPDGLSINICKYADDCTQDEVVSQGSSSHMQEALEAVQEWSNRNKMTINSKKTKDMWICFNTAIPAPEPLIRPVLEYAAPIWGGLPQYLIDEIESIQNRCIKILGTSRCNFETLEQRRAHLTVKEYQRILSDPTNPCNKLIPQPFTHEHDLRTTNNLPYVVSYTKRHRQSFIPRAISLLKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L316</accession>
    <name>A0A6S7L316_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ubiquitin carboxyl-terminal hydrolase MINDY</fullName>
            <ecNumber evidence="8">3.4.19.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A003183</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Hydrolase that can remove 'Lys-48'-linked conjugated ubiquitin from proteins.</text>
    </comment>
    <comment type="function">
        <text evidence="7">Probable hydrolase that can remove 'Lys-48'-linked conjugated ubiquitin from proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).</text>
            <dbReference type="EC" id="3.4.19.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the MINDY deubiquitinase family. FAM188 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.12" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020018652">
        <property type="protein sequence ID" value="CAB4032742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L316"/>
    <dbReference type="OrthoDB" id="10263628at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990380">
        <property type="term" value="F:K48-linked deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071108">
        <property type="term" value="P:protein K48-linked deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006594">
        <property type="entry name" value="LisH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025257">
        <property type="entry name" value="MINDY-3/4_CD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059022">
        <property type="entry name" value="MINDY4_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039785">
        <property type="entry name" value="MINY3/4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12473">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MINDY-4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12473:SF8">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MINDY-4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26038">
        <property type="entry name" value="Dimer_MINDY4_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13898">
        <property type="entry name" value="MINDY-3_4_CD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01174">
        <property type="entry name" value="DUF4205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50896">
        <property type="entry name" value="LISH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 8" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0788">Thiol protease</keyword>
    <keyword evidence="4 8" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="Deubiquitinating enzyme MINDY-3/4 conserved" evidence="10">
        <location>
            <begin position="458"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="85"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="175"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="266"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="87"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="127"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="142"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="176"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="192"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00037630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU367088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4032742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="732" mass="82742" checksum="14292723F52D0FA6" modified="2020-12-02" version="1" fragment="single">MADVESVSSSVVREYLSRKGLKETLSMLDKEMPRTDNCVSNRAQLAKELHINTLMKKNKESQESFRTMLEVIVQFMMTKTWQEKHSQNLTSAESVKTSRSSSARDDGQDTAKSCEKTDYRNISASQRETDKTERSERKQNIKNRVTSPVSRTSLDDKMKSSDEHLLVLDSVKKQGTDLSSQLERSKMSSTSKLKERHLSVSKDETTLASVPAKQCNQELTEGFSGKINEDDNILSKSLPVKKRTSLNDPSLIKSSNVKKGLRRNVSNVSGGVMSTGLRSSGKHERRNYTNEGFREKPKYFEDDLKESSVFPGRKSLDNLSTDEEMAGKQELFSGKTTRNVKDDFREKSKYSVEVVKESSDFHGRRSLEKMREPLSVNKKEENVVQDWKTEILQKKDVRKNMSSPQSKATKNEDLTFEDIDETLDDELQKINFNASPRKSTIPLFQCQPITLKQAKDLKTIVFGSTVNSFNSEWRNQGFTFCHLDHLKYGIVQHKGGPCGLLASVQAVVLKQLLFNDRVSTNKQRLNFSSQETNDALCSALVEILWRAGSYKTARVAVRSEKDQFIPSGGYKVDRLSEKLVIYETNDCNELEIFIKENMKQFACDDAGCILLLYSAILSRTVEKIKEDMDDDNGTLMGAHGYCTQDMVNLLLTGKAISNTFDDVIELDSGGDTKNILKGVDKQSDIGLLSLFEHYKSCLVGSNLKSPKYPIWVVCSESHFSVLFSMKRSLVNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LHG0</accession>
    <name>A0A6S7LHG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Retrovirus-related Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A032835</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022305">
        <property type="protein sequence ID" value="CAB4036692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LHG0"/>
    <dbReference type="OrthoDB" id="5984993at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="9" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="10">
        <location>
            <begin position="70"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="11">
        <location>
            <begin position="326"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4036692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="692" mass="78636" checksum="AC705607995C1D51" modified="2020-12-02" version="1" fragment="single">KCYSKQLRERLLAQEELDLAKTLRIARSSESAIKEARLLSGYETRDNIINIDRLNKPDKRNRNYNSENFKCYRCGGVGHKPSDCRAISMKCNNCQRLGDFARVCRSKGVSRKPYESQKTSSKKTKAYRHVRVIRRKDSDSNESCIESESEDEQILFMEGQDSPVQITINGRKIKMVADTGCRQNIISSQLYTEQFKEHPLKSTTKQFVAYGQKVPLTCLGRFKASLKAGMMTIHSFVYVIKGQAESLLGRKSCFDLGIFKQVKFVKQTNSNSKKINDPRLNSLVNEYNDLFHGLDPNVKPVSQRLRRIPLSQIEQVNDEIDKMLKDDVIEEVPEPSPWVSNLVVVPKASGGLRVCCDFRELNKAIVRERYVLPKVEDTLDALNGSKYFVKIDARSGFFQLTLSEECRYLTKFITNKGCFRFKRVPFGLSDISETFQKVMEEILFGLKELEISVDDVIVHAVTMDKLISRLHEIFERCRERNLKLNPKKCEFGLTQIPVLGHVVSAKGIQPDPVKTKAIQEAPPPANVAELRSFLGVCGYVSKFIPNYAKLVEPLRRLTRQGTNWTWDSEQVESFEELKRALSNEPVLACFKLDGPTVLVTDASPVGLGGVLLQEQTTGELKPVAYISRSLTPTEARYSQIEREALACVWAAEIFHNYVFGTEFTLLTDNKPLVSLLSLDCKKMLPPRIQRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LHW0</accession>
    <name>A0A6S7LHW0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023145">
        <property type="protein sequence ID" value="CAB4037483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LHW0"/>
    <dbReference type="OrthoDB" id="406634at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="79" mass="9045" checksum="51D9E85DAD31C86F" modified="2020-12-02" version="1">MSEEGNMPTFQFKKLLNDDQELYKWLVTMITQTGIARVENAPKEKGQLQILGERVGYLMETTYGLVSMLMLPSLSFLQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LU88</accession>
    <name>A0A6S7LU88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033998">
        <property type="protein sequence ID" value="CAB4044113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LU88"/>
    <dbReference type="OrthoDB" id="10454599at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13206" checksum="8238F9D43EC68001" modified="2020-12-02" version="1" fragment="single">MGLNSSIEKCDHESGSQCSTLNIDRQLDAMRNEVRQQERLITEKIKQAMTVKEDTLVMRYSDLKDVTEISAAIQEIFRDEPVAVQFLKEAAITMIAEFRNNSTTKELSRCHQVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8J3</accession>
    <name>A0A7D9D8J3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022902</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000152">
        <property type="protein sequence ID" value="CAB3978914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8J3"/>
    <dbReference type="OrthoDB" id="10056483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="190"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="251"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="137"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="204"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="251"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="34429" checksum="FD18B2EC2963D105" modified="2020-12-02" version="1">MDVNKSKCEVLSVTRNVKPVKFSYLLKDIPISKTNVQKDLGVVISSDLKWNQHVSTVSAKANKMLGYIKRSSLDIRNEKTRLALYKTMTKINDLTHKRFEKVSQRSHKSSAKSSISKLSKVSSISSRQAAANAAGLKQRMTSLIKQQELEREREELQLLQRELERQGDQERLQGEINAVVAIHDTLVEDTKLPSNNHPKLLPINPNTIQPSTSYQDPSISQTSQVNTKENTNVGSVARQLDPKIPAFQPASMSASQLTQPVPHSTDVMGQNERDGVEIQVQQIELIKRMSLCAPKPPVFSGNILELTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9K3</accession>
    <name>A0A7D9D9K3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061780</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000172">
        <property type="protein sequence ID" value="CAB3979153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9K3"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="466" mass="52483" checksum="9AB16027E36FCE8F" modified="2020-12-02" version="1">MSELAQTLPRYPTDISVIVVKMKGKDNNFKDVMHWLYRSLNAEWHWYRFEHQARGSIHCHGVAKLKNDPGLCKLSETALKGYLAENLIKNSDQAEIEELNLQIAQRKKASETVCHNEEVATYNSEQLLGLCQPIACINAFHSSELAKKASADEMSGLQPTVFLTKVAQVMLTMNLWTDVGFYNGATGTVLEFIFANNHQPPDLPVAVIVQFDDYTGRTEKTAGISYVAISREYSSSLKRPIHCTIGFRLKNHIDFSWCKTEKTRDCSCDPFGSIKIILWEDFVDTIETGNTYDFVDTIETGNTYLVKNIRLKKDNYINIIYFNTAMTGTQINEATAFNQPLAEESDDAQLTILSTTEITAHIIGVTTINIHRTCSCNKAIEEQGKLSNTNNQWYVKLYVQDTTNQANKVYLSLYHSMLVKLVEVADLKVDLNFCNEEDLTIALLDSTGVTCYDTAAKVTDVTPIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9L4</accession>
    <name>A0A7D9D9L4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041642</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000272">
        <property type="protein sequence ID" value="CAB3980241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9L4"/>
    <dbReference type="OrthoDB" id="5954069at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13189" checksum="7680517CB9754BFD" modified="2020-12-02" version="1">MSSEESRSKSINKMSVIELKEYLANRGDGYVESLLTETLSNERLHLYMGKVKPAMKDKTDKGKSYYDCSFILEEDLLNTHGEDSPTNMPCIWTKKPTVDSRPCDVKDLLIAHCDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DCI8</accession>
    <name>A0A7D9DCI8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000503">
        <property type="protein sequence ID" value="CAB3982455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DCI8"/>
    <dbReference type="OrthoDB" id="10046039at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16398" checksum="14BD213EAE47E3C3" modified="2020-12-02" version="1">MVGLPATLTTSSEDYLQNPTTKYVDSLTENIENRFSESLPILTAFQIFDPMGVPARSDDAFKEYGIPQIKILADHFYEEKKVKELTEELECEWKKFKYNFPSIFLIPQKQEFNYPGSDRMGTSTHVILTINVPALHAPPSLHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFE8</accession>
    <name>A0A7D9DFE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serine protease 23-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A085799</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000739">
        <property type="protein sequence ID" value="CAB3984436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFE8"/>
    <dbReference type="OrthoDB" id="10037376at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050966">
        <property type="entry name" value="Glutamyl_endopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15462">
        <property type="entry name" value="SERINE PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15462:SF8">
        <property type="entry name" value="SERINE PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S1" evidence="3">
        <location>
            <begin position="146"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3984436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="350" mass="40554" checksum="992CB89C9C1B0721" modified="2020-12-02" version="1">MAPTVRLTFSFFRMCRIGQFQRRSSRNETGHNMISLVGIFLFMYALVNTVSCRSFNENTFTNEEQGNDYNEQLDGDDAEFDWQLSTDNVDLYKILNRIDLEEIITFLKNASSDVGEAASVTRRQKRKATFGRDDRKQITTSLAEVMPYAASVRISTGCSGTLIGPRHVLTAAHCVYKGPRRKKVGFLHMSGKIRWRKVRKTYIPSKWHTSTANDHRTKYDYAVLELRRNHRRPYMTPVAFHRSQGSKLEFNGFPGDKKRNTMWHTRCFVYQNWKGYLINSCDVAPGMSGSGSYLFLNQKNYVVRGLVVASVYLRKGPKFYRFNVVNPLTKEKTRQVCTWMRAGRDCRSFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIQ0</accession>
    <name>A0A7D9DIQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042072</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001085">
        <property type="protein sequence ID" value="CAB3986874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIQ0"/>
    <dbReference type="OrthoDB" id="5957919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="502" mass="56586" checksum="60A8C995BC77120A" modified="2020-12-02" version="1" fragment="single">MEHKELCNCVTDPKHSKSLFLRKNQAILHNAEKIFCGELPHESNFPAHICAPCERRLNNAIQFKNVITETQKALAENVRTKRCVDLSPTVVQPTKVRAAGSSRRRSIDFNVSTTDDTQSASPNILGTPVLVDASSYVLNHANKELIEVARRGNPSVLRQRSFDGLSSETWMAELINEMKTRCPMAHQILSGLLENSIYPEKRNPALCLIYGIIMFLKCHELSKIQRINSVLLIQGQASVNVIAELNKYGFCLELKMKYNILNDIGNHFLDRAAELVKSGHRFVYVLDNIDWEEKAHDMRQDVQNRSVHAVATSIVFNRVPEKDLPNSGPQKNLHHCNVDDLVIVNDEDTKKIRARYRAIIAKLLFEHFPAFEMFKQYTPQVTECAYAKEMSTRSEVITMPVVMKDEKKYAECVDVLDQLEKWTHEIYSAAGLCSPESESSKEITPVITAHSRPDQPASHVPPAATESDPLHGVKIPCNGDQLTRVRFAGAKDLRAGCHSPKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKX8</accession>
    <name>A0A7D9DKX8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000911">
        <property type="protein sequence ID" value="CAB3985731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKX8"/>
    <dbReference type="OrthoDB" id="6155282at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="266" mass="29894" checksum="3927EB50D3830925" modified="2020-12-02" version="1">MNFAGNFNDSMPQSQMTPGKRVVGNNVDSVVEQSNDSAKKLKSSYRVGQKPNIKPSRRQALKWETVKADIRAWINSLLGRKHKNANINELKVNDDIISDDKSITETLNEYFINIGMKMAAESACQSTDALNDQVIYESTVLLPKENFHFADITIDSVSKRLQKLNVSKATENFMGSACKTGNNSMSDRNSAPKMDETLRKLGHDAKMSVVKWMPLFGESEEFEACCAARLDEILKQALDLEQNLIEQKECLRARMKAVSRTLMASY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLK2</accession>
    <name>A0A7D9DLK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018808</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001287">
        <property type="protein sequence ID" value="CAB3988149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DLK2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="30734" checksum="79286035FB8BA7E7" modified="2020-12-02" version="1">MCHEGECICKPNYELFQKQCIPTQGCLLDGHCIEQHTECMHSKCTCKVNYSWDPTAGVCVPVQKTLTDRPTVVSTTDETTSMISTRVMTTNMISTNVMTTIPEVTSTEGVISTSTGKTMVTSTEGRRVSTTGGRVASTTGGRVASTTGGRVASTTGGRVASTTGGRVASTSEGRIASTSEGRIASTIEGRITSTTENAVKEAIKDESIPQEFWKWIGIGGGALVFFLVLAIGFYCYTKQCGKSLMYNKKNNGPNIEPCGTPHLIKRSDENEFFIWHFWFLFVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DR54</accession>
    <name>A0A7D9DR54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001749">
        <property type="protein sequence ID" value="CAB3990905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DR54"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9089" checksum="42455F5113C0CA5F" modified="2020-12-02" version="1" fragment="single">WYKLGSNRQWYMLGSTNGHRTNETGLTVTDLRVLPRGPNPEGLCLSLDRLTGEAEGIYKCVVRRIAVNYYDSQLVSIMLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXS7</accession>
    <name>A0A7D9DXS7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cleavage and polyadenylation specificity factor subunit 2</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Cleavage and polyadenylation specificity factor 100 kDa subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A074988</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002784">
        <property type="protein sequence ID" value="CAB3996033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXS7"/>
    <dbReference type="OrthoDB" id="64353at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005847">
        <property type="term" value="C:mRNA cleavage and polyadenylation specificity factor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006398">
        <property type="term" value="P:mRNA 3'-end processing by stem-loop binding and cleavage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16293">
        <property type="entry name" value="CPSF2-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.15.10:FF:000008">
        <property type="entry name" value="Cleavage and polyadenylation specificity factor subunit 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022712">
        <property type="entry name" value="Beta_Casp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027075">
        <property type="entry name" value="CPSF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025069">
        <property type="entry name" value="Cpsf2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035639">
        <property type="entry name" value="CPSF2_MBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45922">
        <property type="entry name" value="CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45922:SF1">
        <property type="entry name" value="CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10996">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13299">
        <property type="entry name" value="CPSF100_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16661">
        <property type="entry name" value="Lactamase_B_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01027">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="400"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="499"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="400"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="420"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3996033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="751" mass="85168" checksum="9C32943B26E23D04" modified="2020-12-02" version="1">MTSIIKLTVLSGGQDETPLAYLLQVDEFRFLLDCGWDEFLCVETIEPIKRHVNQIDAVLLSYPDIYHLGALPYLVGKAGLNCPVYCTIPVYKMGQMFMYDFYQSRHNYEDFELFSLDDVDAAFDKIIQLKYSQHVSLKGKGHGLTITPYAAGHMIGGTMWKIVKDGEEDIIYAVDYNHKKERHLNGAVLETLSRPSLLITDSYNVLNMQARRRDRDTQLMSQILKTTRRGGNVLLTVDTAGRILELSQLLDQLWRNPDSGLLAYSLALLNNVSYNVVEFAKSLVEWMSDKVMKSFEVGRNNPYQFKYCKLCHNLAELEKVPSPKVVLVSMQDLTSGFAKDLFIEWAEDEKNSIIFSSRTSPGSLARKLIDNPNTTKIDLEVKTRIKLEGEELEHYWEVQKEKEKDKKMTEAANKSKETVPESDSDSEDEGIGLTFGGKARHDLMMSDEKRGHKSSFFKQAKSYPMFPCKEDRVKWDEYGEIIKPEDYIIPEANAPEEETKIKTEPDSGASDTEMVPVQDDPFSVPTKCVVEKKTIDIKCSYMYIDFEGRSDGESIKRIISIVKPRQLVVVHGTPDATKHLAEYCRKNSDMEVKMVFTPATGETVDATRESHIYQIILRDSLVSALQFSQTRDAEIAWVDGQLVKEHLKSLTQGEEKMDVDTFDSVPVLEQLSLTEIPGHDQVYINDPRLSDFKQILQKNGVQAEFAGGVLVCCSGALAITRNEAGRIGLDGAVCDEYYKIRELLYDQFAIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DYV9</accession>
    <name>A0A7D9DYV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">ADP-ribosylation factor 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A004651</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the small GTPase superfamily. Arf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002792">
        <property type="protein sequence ID" value="CAB3996081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DYV9"/>
    <dbReference type="OrthoDB" id="2011769at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00878">
        <property type="entry name" value="Arf_Arl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:003500">
        <property type="entry name" value="ADP-ribosylation factor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024156">
        <property type="entry name" value="Small_GTPase_ARF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006689">
        <property type="entry name" value="Small_GTPase_ARF/SAR"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11711">
        <property type="entry name" value="ADP RIBOSYLATION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00025">
        <property type="entry name" value="Arf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00328">
        <property type="entry name" value="SAR1GTPBP"/>
    </dbReference>
    <dbReference type="SMART" id="SM00177">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00178">
        <property type="entry name" value="SAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51417">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="8" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9 11 13" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="10" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0519">Myristate</keyword>
    <keyword evidence="5 11 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="24"/>
            <end position="31"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="126"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3996081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20942" checksum="29330BE71DB59C62" modified="2020-12-02" version="1">MGNFLSSVWSRLLGREDVRILMVGLDNAGKTTILYQLKFGKVISSVPTIGFNVETVSYKNISFTVWDIGGQDKIRNLWRVYFQGSQGIIFVIDSSDRERISEVKTELLRLLGEDELENVHLLIFANKQDVENAMSTTEIREELGLNELKKRSWFVQATCATKAEGLTEGLDWLANQIQNRPRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E766</accession>
    <name>A0A7D9E766_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6589 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003267</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004636">
        <property type="protein sequence ID" value="CAB4003461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E766"/>
    <dbReference type="OrthoDB" id="6752548at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6589" evidence="1">
        <location>
            <begin position="256"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="598" mass="69429" checksum="CB5543A84C422440" modified="2020-12-02" version="1">MSEKDLMDYLKKEEYYKEKNDIEISGPLVQPEYPEISSVKTQVMILPLSLEDEVQTCGTANVLKEFAKNLNIKCSKNTEYIVFNEKNNKFDIKAARERYIFYKEMEQHQNDMISLKHQFVSHRSFPKHDDNHSGSDDLEDNLIGVQSEKLASSFKTKMKQISSHMSKLLKKMKLLVQDKNISDAYSAVKLHISEWIGQIAESIKDESIYNCIIEHIQEKNTITASVFELLDEHVDTAEQLSEHANTSSNAEDTTAAKRPLRDHVITVGDVKTTMTIRGASAKQIESNTEIVRRHFNHGNFQRNFNAIEDFFWGVMVACVKEFQSSTFFPPSYIIEDYKKKDQEYSKFVLKCFKDWLDYNKTDSTFEYFYLFLTKFGPLLYKLRQAVRMGNGKAREACWIELTPIFAAFNKKNYKTESLVHMLNFTALWPLAYREMFRRNCSVNVKGKHGHNFAIDEYMETFVVKPVKLYGRKQTTIEMLGKICMNIELLEHIKSIYQQSFDTSIGGKSSVPDPTPDWIKVAWFAIHHKWLINAQRKTVNLYPHGKKELSDLADIPKECLNVEERGCNKIKENFSEMIYRQFPTQTFVNFTKSTDGSSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8R7</accession>
    <name>A0A7D9E8R7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055869</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004743">
        <property type="protein sequence ID" value="CAB4003851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E8R7"/>
    <dbReference type="OrthoDB" id="5988523at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33053">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33053:SF26">
        <property type="entry name" value="TRANSPOSASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="449"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="451"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="465"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="475" mass="53328" checksum="9B14CFD33DA56B19" modified="2020-12-02" version="1" fragment="single">SDLDNEFGYSSGTSSDEEQQSGSTEGNCSNSQPKSFNDELASWATKYQVKRAAVNDLLALLKKQGHALPKDARTLLGTPKEVTVLSKCGGQYIYFGIKHGITQVLSAHPGALENGISLELIINIDGRPLFKSSNDQFWPILGSFNNLDVFVIGLYYGKTKPSSLEEYMDDFLQELDALKKEGITFGSKTYKVELHCFSCDAPSRCFLKAIIGHTGYFSCERCQMKGTWKGRVVFNSGDIATLRTEEAFANYDYEAHQKGQTPLICHGVSCINGFALDYMHMVCLGVTRRILHFLKNGPRECKLSSVQLAQISANLLSLKGKMPSKFARQPRSLDELERRKATEFRQFLLYTGPIALKGVVSTKLYQHFLSLSITISIMLESNADRRNSLLNYARQLMQFFVKNCKAVYGETFTVYNVHGLLHLHEDALNNVNVDDMQLCESYNFTTTAETTDNDQDDDDNDPKKTNTRRPRNHLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EMJ7</accession>
    <name>A0A7D9EMJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049213</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007350">
        <property type="protein sequence ID" value="CAB4012029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EMJ7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd23385">
        <property type="entry name" value="beta-trefoil_Ricin_MRC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035992">
        <property type="entry name" value="Ricin_B-like_lectins"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50370">
        <property type="entry name" value="Ricin B-like lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50231">
        <property type="entry name" value="RICIN_B_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="28113" checksum="B3DC4C16815D8B01" modified="2020-12-02" version="1">MQFISLSVVFCICLATSTLYEVNGKDVVIFRGERDRFTNVFHCNVSNAVCSDESCVDCQCMVNQTFIQTRGQYGKCVSNELMVYAISYEDSFLLQDYIDKICLYQKPYMLYTKDTFVLAGTCSYDNWDYRWIWTNFGQLFNWQTLECMADDLYARNNYKYYVTMNKCDRNNQRQLWECVGERIKQTQSGRYMCHGEHSGYVTTRKYYWGYRSKWTRFGSKKDVCSQGSQILKLFIKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENA1</accession>
    <name>A0A7D9ENA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nuclear pore complex Nup107</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003794</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007722">
        <property type="protein sequence ID" value="CAB4013023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENA1"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16460" checksum="A3DE752406BEF79A" modified="2020-12-02" version="1" fragment="single">MADREYVVTAINDVLTTLNRYVDLDSSSTDFQPVILRLDYLHRLVVNLAIDDFVIEMISLAYRTLVEIDNNETISGYRASTDTTGQRGRPSFEIGEEQLSYLLEQGFNVRDIGSILGVSVRTVERRMSSFGLTVSGIGKEVRGSMIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H6M4</accession>
    <name>A0A7D9H6M4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">P2X purinoceptor 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A019803</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000017">
        <property type="protein sequence ID" value="CAB3976858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H6M4"/>
    <dbReference type="OrthoDB" id="5979249at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF3">
        <property type="entry name" value="UBIQUITIN-LIKE PROTEASE FAMILY PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="38"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3976858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18335" checksum="58A6AE76E2A1B81C" modified="2020-12-02" version="1">MEDDLDQTEHDEDMGAFEEDSGELRNDKDQPHSSAGPPEPHNHLPTSAPDWCVCGYCRPMTQEIENKCCRQKNCITLTSRFAKICLDPDVLELCIRNTGDIRNDQEDNSTRAFRKAGCRQFVLAPHGHLGKGNRRVCPSCVVLKIRGRYPSVTGVYMGFREH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD51</accession>
    <name>A0A7D9HD51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073658</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000070">
        <property type="protein sequence ID" value="CAB3977780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD51"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="597" mass="67026" checksum="31AF10DD03D680BC" modified="2020-12-02" version="1">MAAKRPSVVEGNTPGKPSCKRTVKGTSRKSLFGSEDDEIRKIRASGGACRTRVNKHLAVRYTTLSQAEEFLQIDYMSNDFGCYNTECKSPSPKPTTSIDDLLSTLSPVFKSSPIPKQENKAPQYVGDVVQTFLKCFQGSMSSRLKMQIMNYIFKLVLVDIGGMEYLNYVSPDFLNICFSSMKTLQEEKKHNLILELGKCFERTDVNRRCRMPLDRMPFGLLDYNIRGFSSNRTNALGYEEHYGSWLDTMFSQFGHKWLCLHRGPAWQYEVDEADVKADANTAVKNNGDASTAVEDTVDANDETGLNSLMEKALQQSGIDLNTYDGDVNDLHAAENMFQQSSLQDVDYDESLETLESSFAELESSLAEFTLSSGSSLESSSSMNVEESVSTVDSATNQLINLSHLWTYATDCEQIEIMHGNAGPVQMEKHHQVRPTKSKVVKRHPAIFNPLKGKINVASLGPRALQKRVKSSGFSRTVDVQMKVLKQAQKSISNGRWWIKADACDVRKGLRESMRGIWEGDEDFGDGLLQQMYSEYKSRKSVVDGIGTSNKLGSMCSDLEKVKKEVCDDFEFLTEGNKQSNKLYNQVLEKKDIQPKRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD55</accession>
    <name>A0A7D9HD55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Multidrug resistance-associated 4-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A079093</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000422">
        <property type="protein sequence ID" value="CAB3981721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD55"/>
    <dbReference type="OrthoDB" id="6500128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03244">
        <property type="entry name" value="ABCC_MRP_domain2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000163">
        <property type="entry name" value="Multidrug resistance-associated protein member 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF456">
        <property type="entry name" value="MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3981721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1137" mass="129373" checksum="6BA60DF987A5B7A9" modified="2020-12-02" version="1" fragment="single">YRNQATRTFISRMSQKRLFIGHRISALPVLNIVCGINPLYKYSSCTARTETHGGVLANKICMFLRRYVLISQASTAGSLVMIDITQFQFRDYFLKYHNTTQTTHNVTNLEPNTANGVMLLTQQYCSCLYNADFGLREKECAFCFLNLKIQANKDLAERVFRKTRKFSVPEFDNPESGCVCIKLASQLQICDDARIFLACNVLYWVSQKKLLWLTVFGLAILLISVLSQPYIAVVVVPIIGVFVWLRQYFVKSSREIKRIEALSRSPLYSHISATLQGLATIRASEEQNQFHEKYNKYQDRNTSASYYYLAANRWLGYRLDIICAILMTFVAFAPFIAHEAGLGGVNPVLVGLSLLYTKRLTGMFQFCVRQTAEVENQMVSVERVQQYTQLESEAALEELTGKPADAWPQHGEIIGETVVFRYHSSLPPVLKGIKFHIKPKEKIGIVGRTGAGKSSLISALFRLAEPSGKINIDGVSIKEIGLHDLREKLSIIPQDPVIFAGSVRDNLDPFSNHTDTEIWSALEQVQLKDVVNNFPEKLEFQITESGNNLSVGQRQLICLARAIIKHNRILIIDEATANVDHKTDNLIQETIRDKFRDCTVLTIAHRLNTIMDADRIMVLDAGSIVEFDEPYELLKRPKKFARIYSREQIKSLSMAGRITWRVKHRHELPRLADLEILLSKSFDERNKHDCLRKAQVPSIEKFIFAANIRKDDCFDRLHSDIDHLTSREILWHNSCYASYTSDRNLHSLSTGQTGSPQVNEVSEVSLKSQRNRPLTDWTKCIFCRNASRKRDFKLINIVTFEACNSIRTAAEARGDEELLPVLRTVELIASEGKYHKSCHASYVSKANIKSQCINGKPVNEYEDAFAEFLDIIRPEILNGKACNMNYLLQLYKDMLTKRDVNADSYTRQKLKLRLKLVFNDSLVFHQPHGSTKPEIVYSSSISLLDVINIAARTTENTTTSVAAQNEFLRDDPNESIKIIYKAAVIIRNDLSTCRGIKIDPLSLEDLYIQKARALIPDNLYWLVRYMVSSEVYAADQSPKASIVSHERKILMICQDVVHAASNARVKLPKHVSLEVTLRKDEEAPSTTTHCLRSRRVKSTTKVVKYTQKLSNTRPLTTKAVLKVVQGVFNKRRNLPEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HG75</accession>
    <name>A0A7D9HG75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Homeobox domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A069591</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000709">
        <property type="protein sequence ID" value="CAB3984220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HG75"/>
    <dbReference type="OrthoDB" id="6159439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050453">
        <property type="entry name" value="LIM_Homeobox_TF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24208:SF166">
        <property type="entry name" value="LIM HOMEOBOX TRANSCRIPTION FACTOR 1 ALPHA, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24208">
        <property type="entry name" value="LIM/HOMEOBOX PROTEIN LHX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 5 6" id="KW-0371">Homeobox</keyword>
    <keyword evidence="4 5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="DNA-binding region" description="Homeobox" evidence="5">
        <location>
            <begin position="137"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="182"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="352"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="444"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="507"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="226"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="517"/>
            <end position="531"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3984220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="784" mass="88527" checksum="C537AA31C24BE265" modified="2020-12-02" version="1">MSDVKRFHKKEAARILVELRNKTEDERLMNYRRQLLTKDNNMDGNQNSREFQERMEQACWPCPWPAYPNLVLPPYHTVPIGYPTWSHNPQYWFPNPTAYLPEMSTNPYIQAQAEYQANFTWPMLPHQQAYVDPGQSNRRRRTQFTDEQLAVFERTFTHGSKFPSPGERMRLESKTGISKEKISVWFQNRRAKEKREKGQGGGSKESTTTDSELESEDERQLSIYDETPDEDSEIEDTQNHQSKTTIDFKLTHPADFPASIPSDMKPPRPEGQSTSGFYHSEIQDKEEHQNNTTSHIILSHPINIRTNEPTNIKLPCPERKRVGDIRQPHLTNIHTITPNNIMLSYPHPEGKINTPSDIKQPRTEEKSAVSSSGLYHGEIQDTRNDLNNTPSVSDVNIPHQDGDGNTPHDIKIQPHRNIPTHTLTDVTFGIASSKLYHREVEDARNDQNYPPSDIKVEHPTNTCTHTTTSIRRLSRPEGTAESSKLYHKEVGGTQKYQNTLSDIKIMKRPLPEGTNDTDSRGSCHSETEDASNHQNTTSDVKVLHQEGQSNRPNYIVLSLPGGTIAVESAEQYHKENRETRNDHNTPHGDVELLYPTSIFTNTTETKAPYPGGTVAADVSGLYRGEVEDSGNSESTKARDIKLPHSANISINAPTEIKVPRPGGTVAVDLSGLYRSENENTSSFVPPIQTKTSCLNEKPRKRSLIGETEITGETPVMVTHVSSINVINSIKKDIDIAEDSESGENVIKDFRFQSKKAKTEEDMLDTYAVTTLSNAGPECRMFGET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMR1</accession>
    <name>A0A7D9HMR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059296</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000978">
        <property type="protein sequence ID" value="CAB3986203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HMR1"/>
    <dbReference type="OrthoDB" id="5957672at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11350">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="507" mass="58312" checksum="54DF32FFE3ABCB5D" modified="2020-12-02" version="1">MVDWQPKKRYSLYLIGILVIEIPFLLAFAGWLRLFQTNVEHPQLIQNQDLFQILLPRTKQKGTNQTSVQQYRTKFEGLDVQDFLAKIEGAAAQNLRIHITHDQRTKKSRVAIDYTELAFPKIIDISKTSGRNPSKKYAYVHHQYNDQLSKNTRAFISLCAQAGTTGRKVVRPSVKQTKLSSDESWFLLETYYDVKYLDSLLAAADYATLVDMAEYLKECPSNSPDHVSIYFIDNSQASMGFTTATLRLKEDYYKAIVKNTTQKGWTECSFVDRAMKRTPGKQYCVNGDIIKDWKVFEKDIVKNEKCLNIYLWRGIDGVTYRLKFSEDNMKFSSIDVTYALRPGQPVVNEVERFAKDALDENYIAVYVRSEFMLRGSSMDYLRKCVDLVLEVLVALKSTTGLSHVYVATDMGDYGSSWLVRYRKKQHLDENFFKLIHDHIVEKSQGVAYIPPSHVQDRGVIALVDMTLISNAQYLISAGTGTFQAWIAARFLQNHRNDEQLWSKITVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HPJ4</accession>
    <name>A0A7D9HPJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003816</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001401">
        <property type="protein sequence ID" value="CAB3988896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HPJ4"/>
    <dbReference type="OrthoDB" id="6007883at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="96"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19330" checksum="62B702EC41D1F152" modified="2020-12-02" version="1">MEAENDSNEDEEVIDPITIAVNAGASLSAPESALIARKRKVPINKGKNNQRGSAKTTNVSTWDRLKEFPKQHFAVVNGKLRCNACSEVLADKKSSIERHTKSKKHEKGLADIERNKSEQQSIKECLQKRAKRENASGSTLPSDIQLYRDLSSYAFNMLNEKKFTLNLHLSFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZE8</accession>
    <name>A0A7D9HZE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002342">
        <property type="protein sequence ID" value="CAB3993864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZE8"/>
    <dbReference type="OrthoDB" id="5978128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15383" checksum="BDB7FB2EFFC5BC50" modified="2020-12-02" version="1">MTPSTGAEDLYNQIYIDDIHRKSPNEIANLINTAFLDPMKTYQPLTSLPSYDPNDSVLHLDEFDAYKGLASLNPRKASGPDGVPNWVLNEYAEVLAQPVSSILNSSFNEQRLPASWKSADVVPIIKTKPVTEICKHLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2L0</accession>
    <name>A0A7D9I2L0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Exonuclease 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A035995</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003688">
        <property type="protein sequence ID" value="CAB3999856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2L0"/>
    <dbReference type="OrthoDB" id="1937206at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017108">
        <property type="term" value="F:5'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008918">
        <property type="entry name" value="HhH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006086">
        <property type="entry name" value="XPG-I_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006084">
        <property type="entry name" value="XPG/Rad2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081:SF9">
        <property type="entry name" value="FLAP ENDONUCLEASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081">
        <property type="entry name" value="FLAP ENDONUCLEASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00867">
        <property type="entry name" value="XPG_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00853">
        <property type="entry name" value="XPGRADSUPER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00279">
        <property type="entry name" value="HhH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00484">
        <property type="entry name" value="XPGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XPG-I" evidence="4">
        <location>
            <begin position="25"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3999856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="25511" checksum="E1DB10001611C266" modified="2020-12-02" version="1">MQTHLRCPTAVYDKELHKRLIMKCREENVLYCVAPCEADPQLAFMVASGLADFVITEDSDLLAYGCPHTIFKLRLTGTCQSVHLSRILESLRISKEEFTDLCILAGCDYCILPGVGINKAHAILNAAAKKEEDCINYVEQMFAEKVEIYAYKKKFLVARDCFAHAIVFDVCSLEVTRLNKHESNHICCKEYGKYPVVLYDGYFYTHHATVFYFHLKLPVKHKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDJ7</accession>
    <name>A0A7D9IDJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004663">
        <property type="protein sequence ID" value="CAB4003556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDJ7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22781" checksum="C5029C6FD4B24C35" modified="2020-12-02" version="1">MSELPLQFVWCENSKSIFRQTLKSAEIQQKLYEFTKSDFTNDLNGVNKCVSELQNILLDTSKKSLKIKKNKLRKRENVAQKKWFDKDAESNDTISENSLIKNIKIQPTLNDLESDKNSKNSPKDSEWFSHFEQLHCKHQISNKEHEGIIENLKHIVNSKNLLNELDTEITNEEILNAAKKIKTKKLHTQIELIMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IET2</accession>
    <name>A0A7D9IET2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein F54H12.2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004866">
        <property type="protein sequence ID" value="CAB4004313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IET2"/>
    <dbReference type="OrthoDB" id="6271650at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009263">
        <property type="term" value="P:deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000358">
        <property type="entry name" value="RNR_small_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409:SF21">
        <property type="entry name" value="CAPSID PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409">
        <property type="entry name" value="RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="444" mass="49089" checksum="CEF39D05EA62C883" modified="2020-12-02" version="1">MALETMHKDSCMCSKSELDLFSVPPTQVVMEKGFWEDVDPITSISSSDTIEFLCAANSGVYTDLASSYLYVKAKITTAAGGNVGADIQVGPSNLWMHALFSQVEVFLNNKLVTPSSTAYPYRAYIETILNFSKDAKDSHLTSALFYKDKAGKMDAVNLLAQDAHVNTGLKQRHAYTRESKSVAMEGRLHSDLFAQDRYILGAVPIKIKLVRSRDPFCLVSSAEDPNFKVVIEECLFRVRRVNVAPSIILAHSQSLQQITAKYPINRIDCKVVFVPRGNMSGNQPNIFQGGLPNRIAIGMVDADAFNGTYTKNPFNFKYYDITTMGLTVNGENLPGKPLQLKFGADSNYISAFQTLYAGAHKIFDNQGNGITREEYANGYTLFVFDLTPDLCLGDHVQPIKNGNVSIECRFGTPLETAINIVVLGEFQSLIEIDANRNVLCDFNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGX1</accession>
    <name>A0A7D9IGX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006169">
        <property type="protein sequence ID" value="CAB4008597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IGX1"/>
    <dbReference type="OrthoDB" id="5950623at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051726">
        <property type="term" value="P:regulation of cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039596">
        <property type="entry name" value="GAS1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16840">
        <property type="entry name" value="GROWTH ARREST-SPECIFIC PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16840:SF3">
        <property type="entry name" value="GROWTH ARREST-SPECIFIC PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="27582" checksum="2D0906BC2ED8972C" modified="2020-12-02" version="1">MAEVLARLVVLFLCLLSHLMMSEALNCYQALGDCNTDEKCTSKLKQYAKECENIVDTYNTMSNASKYPCSASCVRAIKSLRQTTKGNALWKCNCLLDAHCISLKTRTEKCLAIANGTYRKRIGCTYAHYNCMKDTKCQDAQMDFLKKCAKLFTLTECTEQCLCSQKRLFGLAVGRPLRNCECDGSDELYCLGLRAHADQMKCSWKNIRRSRKKLKKRCKRCKQRRRGDRCGRREKPKRKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9II02</accession>
    <name>A0A7D9II02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062803</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005314">
        <property type="protein sequence ID" value="CAB4005786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9II02"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050938">
        <property type="entry name" value="Collagen_Structural_Proteins"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37456:SF3">
        <property type="entry name" value="COLLAGEN ALPHA-1(XXV) CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37456">
        <property type="entry name" value="SI:CH211-266K2.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="25706" checksum="E53BEBE21E390BCD" modified="2020-12-02" version="1">MLLGFVGFVGSVVLLGFVGSVVLLGLLDLLGLLDLLGLLGLFNLLGLLGLWVCWICWVCWICCVVRSVRSVGSVGFVGSVGFVGSVGFVRAVGSVGFNGSVGFVGFVGFVGSVVLLGFVGSVILLGLLDLLCRWVLLTFWICCAVGFVGSVGFVGSVGSVGSVGSVGFVGFVGSVGFVEFVGSVGFVGSVVLLGFVGSVGFVGSVGFVGSVGFVGSLGFVGFVGSVVLLGFVGSVVLLDLLDLLDLLHLLGLLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ILA0</accession>
    <name>A0A7D9ILA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056096</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006083">
        <property type="protein sequence ID" value="CAB4008304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ILA0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12734" checksum="98E616952FC0A3E6" modified="2020-12-02" version="1">MKQETTMDVIDEFNPQEWEISSENEVEGFEDFNLFRRKLSRAPMAANNNSGEYFYCVQDSTDKVRRVVLSGCKGAKDPLSGVANCRLKLDENKGRVIGIQLDSQIIVKKQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ISV4</accession>
    <name>A0A7D9ISV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009090">
        <property type="protein sequence ID" value="CAB4016371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ISV4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="30"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="10828" checksum="ED49C2F7D7C9D1F1" modified="2020-12-02" version="1">MSNTNMQPKTSMNYETKAKSLVPSPPTNLPTAPTGTSPASTSDSKTGDLSIVPASIAYQPTPSKVAGQIVPLPVANAKKMRHSPTCFAIAHPTCLPSLPATIRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IX16</accession>
    <name>A0A7D9IX16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A005236</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008616">
        <property type="protein sequence ID" value="CAB4015186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IX16"/>
    <dbReference type="OrthoDB" id="5978836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="47"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="3">
        <location>
            <begin position="261"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4015186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="398" mass="45349" checksum="5707F379068DAEE7" modified="2020-12-02" version="1">MDQILQEIEKCVCEQDDILIGGNDWRENLKILAPLHKLLKKDLQWKWTPECRKAYDPCKQSLTSDTLLVHYDLNRKLRITCDASSYGLGAVLSHAMDDGQGRPIAYASRTLSHTEKNYAQIEHHKPLLAILGPRSAIPTLAAARMQRWALVLSASDHVIEYKSSEKHANCDALSRLPHQNSTIVSESAIYQVSAIDGDFPITAKDIGKATKVHSVLCKEYYYVVSVWPENCQDENLSPYHNRKLELSCEQDCVLWGSRLVIPPVFREKRINELHSEHPGVCGIKAITCTCAWWPKMDEYIERAVKGCTVCQSVRNTPPHASLIPWKWPTRPFQRVHIDFCKKMYRTTPHSTTGMSPGELMMKRRLRTRLSFVKLDLAQVVKGKQAQQKVYKDGKGKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J0Z3</accession>
    <name>A0A7D9J0Z3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010898</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010254">
        <property type="protein sequence ID" value="CAB4018999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J0Z3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14652" checksum="CC164075486C94DD" modified="2020-12-02" version="1">MNFCHLMILLLEPLASSEEVAKYKVDEAVAEDEQLENMLQNRFEGHVDMYRLGSYAQFSTDSSWFGMIIYGQFKASHMHYRVVVTIKYDQHSRTRISELTRSLKKQLDGSSSFVSVLFAVSPNSFKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J1E4</accession>
    <name>A0A7D9J1E4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A030146</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010898">
        <property type="protein sequence ID" value="CAB4020313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J1E4"/>
    <dbReference type="OrthoDB" id="5979077at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="272"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="469"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="224"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="325"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="403"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="568"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="18"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="480"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="500"/>
            <end position="513"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4020313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="630" mass="72102" checksum="ED459F929CC065F3" modified="2020-12-02" version="1">MAKPSDTIETSSNRKIYNRADENKKTSEVSELKKTIAEQKENITNREKHLLHLEKKVALLEHENSKNKKQILSFREKLKDSSVYDYESAEHSRKIAVSHLQEVERACQESHLEKPDSVLKQTVQNSGITLEKNSEELIAHLNSMKDVVQTLRSEKEALQNDHNNLSSFFAESLKILFKQVRDKGSKLPGNNLHTVPENTPITPGEDVFQKAKEPSTDSEDVNDLDAFKKKLKSNEQCIDELANQIRDLENRKKGLLETRFAMIQEFQAGGEVPKDWKTDMSGNDAEEKVENETVRDRKRSRVTKKIRKLERTLSMDHGVGKLDCIQKLCKKLEDCGQRIHELEATNSELRAGHEDMEEEAKYLKYVLSYRGDILKAQLQNKYETKMAAIKDELAQSKTSRSEVMALTKRNHDLEVEVRRLHEELNTLLQNLPAFQVAQRSSSRSSENAADVTANSLDVSLYLENSKNGEDISRNADGFSDNMNQNTVAGNSEISGEKSQNDNNNSNDGDNSQNLSGEALQSLEEKVFQLTEEKRVLLLGMQTLTSQWTSRENCPESDSSAVTVREANLREVEQENACLFETLQRIRNVLDDEREHENNNGQEDKILKLKDEIQRLDEKVEANRSRSFWRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3T3</accession>
    <name>A0A7D9J3T3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053933</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011371">
        <property type="protein sequence ID" value="CAB4021307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3T3"/>
    <dbReference type="OrthoDB" id="5988483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="644"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="644" mass="74008" checksum="898CFA044A5FA7D8" modified="2020-12-02" version="1" fragment="single">MFKINGAFQRAKRRVNANIQAFKEMKKEVEESVELKGEAGRRKKYKLLQKMKLKKLRHVFEGRGRMLKCKEFPDLAAVMEYAFGESDHIERGGGGLESHPRLTDTVLYRAADSNTIMKDARETVLALAPNEFDISLSSCFNYTQNYKEGTYQATRHHSGRGINACISLHKPPRIGVEKFVVNLRWSSQNVNISMDFAHLHSDNVMIDSKDAKAKQSPGRCFTQTVQRAFNEIFLLLANPALDQYFRNPETGKLKEHFIFVVDNGPSEAPSHPMVKMWLARMLLVLQLKSITQKSFAEYHSKRNPVERVHSVENRALSNEVFTSTGVHKEYEKGDQQHLENMEFMVGEVVKCLKKAQYGGKPISSQRGIGNEDNFVFDDEIKLLNFLSRSEKLKNENNEHYSPKKNNLWQEVALIWNLNVDFIGCYREDYQRLENTFDEEGEQTCWASKYATIIANPDILDEYKELLVAQPIPDYVRWYNTGGELHYIPLEKLLDLNTNVIDSTPAAFLPSNILDICFKIFKHDVESIIPSIALLSWCTEDEDWVKQKRKFFGQNQEAIRSVGANVLAMWSKDEIGSTGWKSDTVEVEFDVEEGAHYQYVVKDEVKARRLKLAKDTQKKVDDYENIFQIGAVIRWSADDVVEVGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J533</accession>
    <name>A0A7D9J533_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028573</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011780">
        <property type="protein sequence ID" value="CAB4022063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J533"/>
    <dbReference type="OrthoDB" id="1919336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="73" mass="7948" checksum="9169DBC8D1E0A250" modified="2020-12-02" version="1">MQQILSIASDDTELSSLLKDVGLESKPGHRKRFVAAIKILTSKKHGDCDDDSKRDEGNLGSVGESSNKFLKCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDD2</accession>
    <name>A0A7D9JDD2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA helicase</fullName>
            <ecNumber evidence="1">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A082911</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the MCM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020014708">
        <property type="protein sequence ID" value="CAB4027279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JDD2"/>
    <dbReference type="OrthoDB" id="1882346at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042555">
        <property type="term" value="C:MCM complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017116">
        <property type="term" value="F:single-stranded DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006271">
        <property type="term" value="P:DNA strand elongation involved in DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000727">
        <property type="term" value="P:double-strand break repair via break-induced replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902975">
        <property type="term" value="P:mitotic DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031327">
        <property type="entry name" value="MCM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018525">
        <property type="entry name" value="MCM_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001208">
        <property type="entry name" value="MCM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630:SF46">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00493">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01657">
        <property type="entry name" value="MCMFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00350">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00847">
        <property type="entry name" value="MCM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50051">
        <property type="entry name" value="MCM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MCM C-terminal AAA(+) ATPase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU004070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4027279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11119" checksum="A0B1F590296DF6E7" modified="2020-12-02" version="1" fragment="single">MLRYVLHSAPRAIATTGRGSSGVGLTAAVTTDPETGDKRLEAGAMVLADRGIVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHAKLNARCSVLAAANPVWGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JFG5</accession>
    <name>A0A7D9JFG5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bacterial Ig-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A087854</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015565">
        <property type="protein sequence ID" value="CAB4028569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JFG5"/>
    <dbReference type="OrthoDB" id="5974456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044016">
        <property type="entry name" value="Big_13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34677">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34677:SF3">
        <property type="entry name" value="BACTERIAL IG-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19077">
        <property type="entry name" value="Big_13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bacterial Ig-like" evidence="2">
        <location>
            <begin position="150"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="572" mass="63059" checksum="5D5F17D09DB9D871" modified="2020-12-02" version="1">MENSFIEEDCGNGTNAKWTGNEIPDGPHKLMVYGVDKMNNRGPLAELQFNVDSTGPKISFPANQPVVTKNNPTFRWTSSEAAKFKCALDNGHVNELDCGDGTSSHWTGTNIPDGHYKLLVYGTDDMNNRGPTAEHKFIVDNSAPVVTFNRADNVTNDTPQFTWSSEEDVSQFLCSLDGAAYVNCGRGRTGDWSRNVPHGQHVFFVKGQDENGNVGTPAEHTFNVDTRHPNVVIEPIPLKTSNRSTSIRWTSDEPARYLCSIDNAPETNCGFGTNGQKTTSELKDGDHTFILTAIDPVGNRAPILRRRWTVDTTGPKISFPAGQPTLTRNNPTFRWTSSEPATFKCALDGGQFNVHDCGDGISGRWTRTDIPDGVYKLLVYGTDDTNNRGPTAEHKFVVDSRPPEITFSGDLPETTSRNPTLTWSSSEYATFECKLEDGKIFNCGSGDDGIWSGRNMTDGAHSLSVRGTDALGNKGQFISRSWTVDESGPRLRFVGDLPSRARRLPRIRWISNEFAFFECSLNGRNYTSCGRGMQHSWTRHETPTGLLVFRVRGRDTKGNVGEPITVAIDIGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JVS1</accession>
    <name>A0A7D9JVS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin repeat domain-containing 34B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066123</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022897">
        <property type="protein sequence ID" value="CAB4037269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JVS1"/>
    <dbReference type="OrthoDB" id="2266637at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tc1-like transposase DDE" evidence="1">
        <location>
            <begin position="220"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="273" mass="31024" checksum="A02E2610E80AEA1B" modified="2020-12-02" version="1">MEKVSKRKRTYVRGKPLGNDLRSLIIDEVIHSGGNIITREYPGNFSAIAKQFSVHDSTVKNIWSNYCENKTLDPKKKKGGNPSKLHDGDLELIETLTRIRPTISLNELKDDVELYDPKPDGVSISAISRALKQRMPSGLQYSRKKVNKVAIERFTPVNMVYTQMFINYLHSKDPRKLKFFDEAGLKLPHHGTRCYGHAPFFGEAAQAGNVITQRPALEYGDIVVMDNCPTHHYDGEEVLTEFLNEIGIELVYTPTYSPDFNPAEFVFGKIYQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K266</accession>
    <name>A0A7D9K266_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Small glutamine-rich tetratricopeptide repeat-containing alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A024712</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024917">
        <property type="protein sequence ID" value="CAB4039073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K266"/>
    <dbReference type="OrthoDB" id="6334002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051879">
        <property type="term" value="F:Hsp90 protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022441">
        <property type="entry name" value="Para_beta_helix_rpt-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03804">
        <property type="entry name" value="para_beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22904:SF523">
        <property type="entry name" value="STRESS-INDUCED-PHOSPHOPROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22904">
        <property type="entry name" value="TPR REPEAT CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4039073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="744" mass="83387" checksum="6F70C02C9BEA3CD4" modified="2020-12-02" version="1">MSANYRQEEAKRLLNFAYRILDWVPVAEYETVKYSVSHNSLFPLSIPLSKSIQILVKRCCMPPFVSLAPLTEKPSSDASCLDVDDLEEKLEKLKFDGNKSFKEGRYNEALDAYSSAIDLAQECNNAFNPLLLTNRATVYIKLGQYEDALKDANDYITRRPDCWKGYARKALALDGLNEKVSAEIAAALAFYQNRAIFSDYSTFGKFFFDLQKRIFVCDTVDQLISNALPSQKVETNLLTILVLGSKDYVLISDMVGRVIVLSNCILVGARINCSVLLTFGGNTSIFVNSKCMITNLSFYLEEGQFSCQLGSLVKVINCNFTGKGNDGPIVHSEGEFNAESCNFSNGNNAGLGCSRPGNMVVVECSFCNSGKVGLVVWDGGTLNLKSSRMYNNRGHGCQIGPEASKCVVVNCDIYHSDEDGIAIDRSKNVKIMRNNVYGNNCSGLSMISSEVNIRENNIFDNGLWGIWAWSNSWCNVSMNKVFRNKAGGVRVGYRAAGEEFSPSVVELNKIYDNIGPGFVENIRKFEVDGRPSTNVGLRKSCFKSPNSLQSAKFQDNEVYNNKESKNVNKLNFSVLYCSNCRKKCEPNRCGKCFAAVYCNKTCLDGHWSKHKKICKVLREKASFLITSMKRVGGDGMIKRHAKGLEEIGPEFSPPPPRDGKRFVVKVQSSIPNIKDIKPHSLLLYDRSLELYEEIQSKVIAKLVQEFGIQCERQIVEKKLFLHCLFEKNGQLRLFINEFADFLKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8H5</accession>
    <name>A0A7D9K8H5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001309</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029192">
        <property type="protein sequence ID" value="CAB4041941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8H5"/>
    <dbReference type="OrthoDB" id="10255128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050849">
        <property type="entry name" value="HAD-like_hydrolase_phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28181:SF1">
        <property type="entry name" value="COLD TOLERANCE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28181">
        <property type="entry name" value="UPF0655 PROTEIN YCR015C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="334" mass="37622" checksum="A93E021496D6BC66" modified="2020-12-02" version="1">MKIHAVLVYSLPLVTFLTQATANHLCSPQASHAYSAGNADIPIRVFALDFDGTATTLESKDVDQFVYQATLQYQNSDKAEKEAMAKRWDKLIEDKSVRLSNIIKNTLRRLKNSPNRITAGNIFILRKTIAEIDNALQHILKLKEVQYVLKGITMEGIKEIAITKAQLCPRLIETLQHFRNNPPNIISAGLSKSFAEFVFQKYNAPPNLIIHAGEFEFKNGVSTGKIMGQLTAFDKEKVMAQLIKQHQKTNGYSIYVGNDFPDILAMLKADIGIAINYTPLFIRFVHAIGIATQSVGDWRGACSNQEYLIYTAQSWNEIKEMMFGNLEHARKLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L3T9</accession>
    <name>A0A7D9L3T9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A008352</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GOLPH3/VPS74 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013678">
        <property type="protein sequence ID" value="CAB4025565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L3T9"/>
    <dbReference type="OrthoDB" id="5979840at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070273">
        <property type="term" value="F:phosphatidylinositol-4-phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3630.10">
        <property type="entry name" value="yeast vps74-n-term truncation variant domain like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008628">
        <property type="entry name" value="GPP34-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038261">
        <property type="entry name" value="GPP34-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05719">
        <property type="entry name" value="GPP34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="4" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4025565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15622" checksum="82F3A3109DDC73F7" modified="2020-12-02" version="1">MIAVHERGNLRDLKDWIEYCAIGDADKNCVSVVLDYFVEKGIIGKESKWFGMKRTYPTKDKEPQIQLLLEVRRITLRDEVPDGFMSALLIILRFADSLHNTEDPLLRRYYNDTEYDKAKPRLDEILRSSGIKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6D0</accession>
    <name>A0A7D9L6D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcription factor E2F4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A070297</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the E2F/DP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014684">
        <property type="protein sequence ID" value="CAB4027240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6D0"/>
    <dbReference type="OrthoDB" id="1743261at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090575">
        <property type="term" value="C:RNA polymerase II transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14660">
        <property type="entry name" value="E2F_DD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000008">
        <property type="entry name" value="E2F transcription factor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015633">
        <property type="entry name" value="E2F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037241">
        <property type="entry name" value="E2F-DP_heterodim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032198">
        <property type="entry name" value="E2F_CC-MB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003316">
        <property type="entry name" value="E2F_WHTH_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12081">
        <property type="entry name" value="TRANSCRIPTION FACTOR E2F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12081:SF18">
        <property type="entry name" value="TRANSCRIPTION FACTOR E2F2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16421">
        <property type="entry name" value="E2F_CC-MB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02319">
        <property type="entry name" value="WHD_E2F_TDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01372">
        <property type="entry name" value="E2F_TDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144074">
        <property type="entry name" value="E2F-DP heterodimerization region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4027240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="37829" checksum="26B17F09B87A0062" modified="2020-12-02" version="1">MAEFSSPGTPSGRHEKSLGLLTTKFVNLLQEAKDGVLDLKMAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNTREISDRLVVLKSELEALDEKERILDEHKSWIQQSLKIVSEDFDNEKLAFVTYEDLCQCFRDDTLLAIQAPAGTELEVPIPEKKQGIDRRYQIHLKSHTGEINVLLVNKDPTNNRPVVTPVPPPMPVSSTPHNTTLLKESQQIPLVTEKITMVAEKPLELEKSIKNIPMETSSTENELKQVANEIIFSNDIKHEPLDVSMIEELEDLVSGDYAPLLQLSPPAGDSDYTFNLTSSEGVCDLFDIPNLAQFPSVSAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6U8</accession>
    <name>A0A7D9L6U8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Multiple C2 and transmembrane domain-containing 1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A002636</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MCTP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013316">
        <property type="protein sequence ID" value="CAB4024941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6U8"/>
    <dbReference type="OrthoDB" id="5973539at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098588">
        <property type="term" value="C:bounding membrane of organelle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd08376">
        <property type="entry name" value="C2B_MCTP_PRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd08377">
        <property type="entry name" value="C2C_MCTP_PRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.150:FF:000050">
        <property type="entry name" value="Multiple C2 and transmembrane domain containing 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.150:FF:000019">
        <property type="entry name" value="Multiple C2 and transmembrane domain-containing protein 2 isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010482">
        <property type="entry name" value="TECPR1-like_DysF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45911">
        <property type="entry name" value="C2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45911:SF4">
        <property type="entry name" value="MULTIPLE C2 AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06398">
        <property type="entry name" value="Pex24p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00360">
        <property type="entry name" value="C2DOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 10 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="363"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="473"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="402"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="404"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="423"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4024941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="553" mass="62898" checksum="588FB0EB67B20741" modified="2020-12-02" version="1">MRRASQRRAAQAKESGKALQKDGVVSVTLVEGQKLIAMDDNGTSDPYCRFKLGNEKYKSKSCKETLNPQWKEHFDLKFFADTDMILEVSVYDRDIRKDEFMGRVNIDLTKYERERSHKIEAELEDGAGMVTMHVAVTAIDIPGCESDLNAYVEEPNRREELEKQFGLKKTGKKIKEVGWLQVKLHRAVGLAAADIGGASDPFAVIEVNNARLMTPTIFKTLNPQWERVYEFNLKDIHDVLEISVYDEDKRGAPDLLGRVAIPLLQITPREKRMYQLKDKTLEKRAKGHLIMTLDVLYNPIRAAVRTINPREPRVLFEPPKFKRQLLQRNIDRIGKVGASVASTGAFVGSLFTWQYKFRSAFAFLVYIMLVLNFNLYLIPLGVLLAFLKQYVIHVLLTERNVNPEDQEGPPQDDDDDDDDDEEDSKKKGDKGGKSFKEKMAMITNLCQTIQNALDNVASTLERAKNLFNWTVPFVSTMVCVAMTGATVVLYIVPIKFLLLAFGVNKFTKKIRKPNAVDNNELADLLSRLPSDPQIKEQKLLKTDPSLRLKRIDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8Y0</accession>
    <name>A0A7D9L8Y0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A071959</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015274">
        <property type="protein sequence ID" value="CAB4028146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8Y0"/>
    <dbReference type="OrthoDB" id="6348136at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="2">
        <location>
            <begin position="177"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="23"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="266" mass="30434" checksum="435B21CB3008DA11" modified="2020-12-02" version="1">MQIRRELEIRQAERDLESFSIAKSSSSSSKNSSNPQSVADQSLKAKKSSSPDKVNVELPVYSSDCNKTHKKFTTVSTSKEISTWSTPLVLGEKTIPLGTFDGKKESWLRFFQTFKAVVDKQPYDPIVKFAILEKHLTGPAKDCIRGFPFTENSYPLALKALQDRFGDEEDQASFYLVLIRRSHEEVKHFGVNTVLCNLRQRYWPIRGREQVKKILSSCVLCKKWRGNPGVQFMADLPASRVEFPNPPFTLTGVDYLFWAYNHQSWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LG11</accession>
    <name>A0A7D9LG11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016343">
        <property type="protein sequence ID" value="CAB4029694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LG11"/>
    <dbReference type="OrthoDB" id="6147543at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="23200" checksum="0532B01D23C421A0" modified="2020-12-02" version="1">MLNPKYFFQALKGIPFTPVIDLFASHINKQFDQYVSYRPDPFASDIDAFTISWADTNFYCFPPFSCILRVARKIIRDRARGVLVVRQWPNTVMVPHTLTNTGATTSCPFTSSDSVTAAVQASAETPSTQEAKTSYLSCIRGKLQIDSGLKCEDNENEIVDAVIHDPKEIPQQFVLFSLDFKTKIGFASKESDCEVQYDEPHIQKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJH4</accession>
    <name>A0A7D9LJH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Urocanate hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055511</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018066">
        <property type="protein sequence ID" value="CAB4032028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJH4"/>
    <dbReference type="OrthoDB" id="194468at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016153">
        <property type="term" value="F:urocanate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006548">
        <property type="term" value="P:L-histidine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023637">
        <property type="entry name" value="Urocanase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12216">
        <property type="entry name" value="UROCANATE HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12216:SF3">
        <property type="entry name" value="UROCANATE HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="10282" checksum="7620888D9EBABD67" modified="2020-12-02" version="1" fragment="single">MLVFMATLKDICSGLPLKPLPSKQTRDCSIPHAPKRNTNLSKTEEILAVKNALRYFPTETHAELAPEFAQELREYGHIYMYRFQPTLEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJK7</accession>
    <name>A0A7D9LJK7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020331">
        <property type="protein sequence ID" value="CAB4034686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJK7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="9543" checksum="4D4571AA3B39F075" modified="2020-12-02" version="1" fragment="single">QVLHSEDNVRHTEEMVSYSEEKVSHSEENVPHPEDKAPHSEDSTPHSENKVPHSEEKVPHTEDKVSHSEDKVAHSEDKVAQSED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZP6</accession>
    <name>A0A7D9LZP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073268</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028597">
        <property type="protein sequence ID" value="CAB4041612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZP6"/>
    <dbReference type="OrthoDB" id="5988934at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22885" checksum="849D173A53EA87E5" modified="2020-12-02" version="1" fragment="single">MSTGIMTRSASQAEGSFAEFAKMMDEYLKNSSIFKDVIVSAVNTAIDVKIQPLQEEIASLKDEVASLKSKFVIVEAKANENEQYSRRNNIRIFGLPEAKDENCYKIVIDLCKDELKIDVTSDDIDRAHRVGKLKQANALTVGEGQASSQPRAIIVKLNGYFTKLKFMRGKRNLSGKRIYINEDLTKINHRLLLNVKELCSPGVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M049</accession>
    <name>A0A7D9M049_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107343319</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010262</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028861">
        <property type="protein sequence ID" value="CAB4041750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M049"/>
    <dbReference type="OrthoDB" id="5988567at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00628">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="22639" checksum="4D4DB2043485376B" modified="2020-12-02" version="1" fragment="single">MAHQDLCIRCKDPVRARQEGIQCDGCDRWQHRTCNSGISRQQYRNAVRNGQAIDWRCVDCMNMSAGILLPLAESSRVGQGSSLTRTDNAEDSSHGTTSPPQNNEAVHLDNSRTANDELIDEELVNILVDMANETEGSAEDNSTPSNHIQESEDTVSNDSNQEEPSTTAAVEPSLMDPPIANVEVHHAPLTYRIVEEGTKRRKISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M7Q1</accession>
    <name>A0A7D9M7Q1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019797</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033806">
        <property type="protein sequence ID" value="CAB4044020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M7Q1"/>
    <dbReference type="OrthoDB" id="5987458at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954:SF3">
        <property type="entry name" value="PROTEIN CBG08539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954">
        <property type="entry name" value="RETROVIRAL PROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="34682" checksum="11CBFF2484A358C3" modified="2020-12-02" version="1" fragment="single">MEKKSDNFIDTERQLLKLTRSKTKAILEKGNLDKMIRHKEALGKIVKELEELKIQGEKDKLQDGEAIEDVQKWGVDIEGEIDETDCEISHLNQYLTEAEARTENEKREKEKILLKQQRDEELYFEKCKLEQMASLGSVSVKSTKPEQAKVSSVKMPKLVITKYDGTYERWLSFWNKFEAEIDNTDLPAVTKFSYLKELLEPHVCDEIDGLPFTMEGYTRAKNILKTNHGNTSEIVRAYVKNIQELPTITGRKVNKIHEFIKNLSYNVQSLETLSKLSQSLSMVRGVIEKLPGIKAELVTNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MAL0</accession>
    <name>A0A7D9MAL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033354">
        <property type="protein sequence ID" value="CAB4043845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MAL0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15259" checksum="D104CDED38C43E10" modified="2020-12-02" version="1" fragment="single">EPVYETIPNVDWRFYEDVPTNANESEDISVEGLASLHDWAGVPSNADRTSDNKTPVENEHQESGNETVATEGRTSDHEEVEVPSNARQASGHTELNKQPDTLKTGATGDGDYQALLKEVDIIEIYVIQVPEEPQHETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FF77</accession>
    <name>A0A6S7FF77_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060718</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000066">
        <property type="protein sequence ID" value="CAB3977738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FF77"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="31"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="48"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13107" checksum="D8B3772C31051C7E" modified="2020-12-02" version="1" fragment="single">PDVAPVKQSLRSLVFSFRMLATRPSTRVQRRAQPAAPRRSATTMQQPESSGVSCEASSSVATTSAPDAASPATNVPDETVQWIVSAVSQAVPSVTQWSLRHYSFAAIFSCGNEGIAYGSVRYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FN97</accession>
    <name>A0A6S7FN97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SEC14 cytosolic factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040399</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000043">
        <property type="protein sequence ID" value="CAB3977346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FN97"/>
    <dbReference type="OrthoDB" id="1434354at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00170">
        <property type="entry name" value="SEC14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.525.10">
        <property type="entry name" value="CRAL-TRIO lipid binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.680">
        <property type="entry name" value="GOLD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001251">
        <property type="entry name" value="CRAL-TRIO_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036865">
        <property type="entry name" value="CRAL-TRIO_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011074">
        <property type="entry name" value="CRAL/TRIO_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036273">
        <property type="entry name" value="CRAL/TRIO_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009038">
        <property type="entry name" value="GOLD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036598">
        <property type="entry name" value="GOLD_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051064">
        <property type="entry name" value="SEC14/CRAL-TRIO_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23324">
        <property type="entry name" value="SEC14 RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23324:SF83">
        <property type="entry name" value="SEC14-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00650">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03765">
        <property type="entry name" value="CRAL_TRIO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00180">
        <property type="entry name" value="CRETINALDHBP"/>
    </dbReference>
    <dbReference type="SMART" id="SM01100">
        <property type="entry name" value="CRAL_TRIO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00516">
        <property type="entry name" value="SEC14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52087">
        <property type="entry name" value="CRAL/TRIO domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46938">
        <property type="entry name" value="CRAL/TRIO N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101576">
        <property type="entry name" value="Supernatant protein factor (SPF), C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50191">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50866">
        <property type="entry name" value="GOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="391" mass="45326" checksum="C83B134D9DA96041" modified="2020-12-02" version="1">MSNLPSRTLTKSEEKALADLKGKLSEESLADEATLLRFLRAREFDVDGACRQYMATWEWRRNNDIDNILKTPRPLTEELKNIMSYGFHKFDKEGRPCYVEKTGRVDVSALLRLPEDQIIRWHVWNTEKQIEQMAEKSIELNKEITTLDHLHDLAGASLNLRKALSLFTRLVKLDQEYYPERVGKIFLVNTPWAFPYLWRVAKSFLDPKTRDKCVVLNSLEMGKLLDYFEAEDLPVEYGGTCRCENGCLPEIPKHMLAMSEDPELKEEYIAAKKSFSHKIECEGKNESIGWFYRISSKDIKFGVSFLKRCDKENESSNRREEWVVKPDYPLHGSKANVGFYHCTSAGTYTLVWDNSQSRFMSRTLKYHVMVSEGMTDEQRNGSTPSINSLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSR7</accession>
    <name>A0A6S7FSR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Drebrin B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001814</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000330">
        <property type="protein sequence ID" value="CAB3980857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSR7"/>
    <dbReference type="OrthoDB" id="5971719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005884">
        <property type="term" value="C:actin filament"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030864">
        <property type="term" value="C:cortical actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030425">
        <property type="term" value="C:dendrite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030027">
        <property type="term" value="C:lamellipodium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0014069">
        <property type="term" value="C:postsynaptic density"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045211">
        <property type="term" value="C:postsynaptic membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030427">
        <property type="term" value="C:site of polarized growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048812">
        <property type="term" value="P:neuron projection morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045773">
        <property type="term" value="P:positive regulation of axon extension"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098974">
        <property type="term" value="P:postsynaptic actin cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030833">
        <property type="term" value="P:regulation of actin filament polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11281">
        <property type="entry name" value="ADF_drebrin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.20.10">
        <property type="entry name" value="Severin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002108">
        <property type="entry name" value="ADF-H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029006">
        <property type="entry name" value="ADF-H/Gelsolin-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10829">
        <property type="entry name" value="CORTACTIN AND DREBRIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10829:SF25">
        <property type="entry name" value="DREBRIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00241">
        <property type="entry name" value="Cofilin_ADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00102">
        <property type="entry name" value="ADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55753">
        <property type="entry name" value="Actin depolymerizing proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51263">
        <property type="entry name" value="ADF_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20532" checksum="2DC74F8DEBD74877" modified="2020-12-02" version="1" fragment="single">MPQELKPIPELDHTRMPEQHPASSQVNMAVDLKTNSASLSKAWQDIFDDKCETDWALFGYEKNSNTLKLVETGDEGLEELSDEWNSGKMLYAGLKVIDPNTNLPKYVFISWQGEGVPSSRKGVCANHVRDVEKFFKGHHVAILARCDEDVEEDVILDKVKKSSGANYSFHKEKARPVEAPTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZR3</accession>
    <name>A0A6S7FZR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072552</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000192">
        <property type="protein sequence ID" value="CAB3979381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZR3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12975" checksum="27F54FCFF9915D2B" modified="2020-12-02" version="1">MFDKNGYAEEAHRHNKAMENLTAEREKYLEEVTDRRNRIAKLKSELAEANSNIKSTNQSLELVRRINELTRKAMPRKPQLSNHYKPSSEMEEYMTIFGLITGGVVGGAAYLML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0V7</accession>
    <name>A0A6S7G0V7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A016966</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000860">
        <property type="protein sequence ID" value="CAB3985345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0V7"/>
    <dbReference type="OrthoDB" id="6382339at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="78"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3985345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30792" checksum="FAF2676E5F42C611" modified="2020-12-02" version="1">MQVYAGIGYVYGLHNFSVGNSTHRREGRSSEECTTPENSTLLRSFLGMANYHGKFIKNLSTILHPLNRLLQKGCEFKWSPECERAFQSTKNSLSSANVLVHYNPELPLILECDASPYGVGAVISHRFRDNIERPIAYASRSLNAAEKNYSQIEKEATPVLAAARLQRWSLLLSSYQYEIRHKSSADIANADALSRLPLKYRADASVEERIFSISDQQLNCHPVSAKQIARETAHDKVLCKVFTFTQHGWSQTCDDLDLKPYFNRRKRYFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3M2</accession>
    <name>A0A6S7G3M2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044493</name>
        <name evidence="2" type="ORF">PACLA_8A080234</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000289">
        <property type="protein sequence ID" value="CAB3980418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020000289">
        <property type="protein sequence ID" value="CAB3980420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3M2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="16117" checksum="4C394DD53F3518C6" modified="2020-12-02" version="1">MGMTYLKYLQYNVELLNKIVRIVQFSDRVPRGKINYQLSAAGFNTSYLQDVKLPMVLPHVRIWLLCKHHELSESEIKEQGNFVLGGRNRFLEDDLVPYKNLVNNFMETKNYAPCEFLKGGHKICEYADALSRLPYDKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRJ3</accession>
    <name>A0A6S7GRJ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085376</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002076">
        <property type="protein sequence ID" value="CAB3992562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRJ3"/>
    <dbReference type="OrthoDB" id="78101at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055310">
        <property type="entry name" value="CEP112"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18871">
        <property type="entry name" value="CENTROSOMAL PROTEIN OF 112 KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18871:SF2">
        <property type="entry name" value="CENTROSOMAL PROTEIN OF 112 KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="682" mass="81566" checksum="A9FE40C4F0A81DDC" modified="2020-12-02" version="1" fragment="single">ILDRKNNELEEMKAKYRSKVTEIETRLKKQDKKIVQQARELEALRKQRDEQMHAMKNMEQGKGTTLQNDFEKRLHDKIAEYEQEKFDMQKKHTQEIQEILDETNARIGKMESENNQQVEELNVIVKQFQHESQRLNEECETLQRGKLLLEQDKVELQKQLRATESERNDLKESLSSYEIEKQKLVSNYESKIEQVEKKAKTDVEHENEEKEKALAKASSAITKLKNDVGELRRELKSTEQQKQNEIQQLAGLHRQERADLEHNFENKIRNLQDELNQVRREDDGRITDLESVLREKDAELEKTLATQRETEDEAEKTLAEFKTKMEETSKRMFDDAKIQMNKVEQDLEKSRTSREKQAKEFTRQIENERVRHEKLVSELKISFEQEKTYLVREHQHEKDLVNREHEREKELYGEKQQSKLQELETQFRSKSSKDAKVIADLQQVNVSLREELMQKEALYKQQLVELGMLREEEKQTFKRQEETQTARYRSELEQERLQLQRHHSTDMEQILDKTNNRFKQMEEDYIARSKKMQETMDALREEIQTLKNERITLQNSQDKRFNATIRKHEEEKASLKNHHSSMLKALEKDLERQKAVAKDVEKQARSVEIRLQEKISKLQYDYEERMNNLLPRELKEELEDTIRSLRQQVSILQSRADVLQEELDATTTLSSTWDMSRLDTHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVS8</accession>
    <name>A0A6S7GVS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon-like family member retr-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083908</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002788">
        <property type="protein sequence ID" value="CAB3996053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVS8"/>
    <dbReference type="OrthoDB" id="5986177at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="269" mass="31724" checksum="88F5566D1747C137" modified="2020-12-02" version="1">MIIADTLSRAYLTDDDVDSSKMNEELECYVHTVTSRMPVSEERLEQIKKETAIDQTMKTLFSTIRRGWPETRKQTPCEIQDYWNYRDELSEVDGILLKQDKIIIPLSMRGKMLERIHESHMGIEKSKRRARDIMFWPRMNEQIEAVVSKCQTCQEYQMSNPKEPMVQGTIPSRPWEMVATDLFQWEQNNYLVVADYYSRYIEVVKLENTTSRTVVNHMKSIFARHGIPSVVRSDNGPQYTATEYKQFAQKWNFEHQTSKSILSEIKRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GYZ1</accession>
    <name>A0A6S7GYZ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015848</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002951">
        <property type="protein sequence ID" value="CAB3996815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GYZ1"/>
    <dbReference type="OrthoDB" id="10045402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="260" mass="29140" checksum="A772C37510A15FE6" modified="2020-12-02" version="1">MFFQVCFGIILCVHFALVDAFSETKRDQAPKGKCLSFKWERENDKIDYVCCNSCGEEIEHCFGKTYGSTGDYCNSCGRNKLSFARKLSMPFSCGGCNGQTHEANTCKRRYSNLPVGCWLFRGCFETACQNIAGEEGFSNYNPFLSDGGVPGETPYYDKQVGSKLRSCFNGVCDDGEYIENCPADCCIKRNPQKCTLLQGLCPPECCGEPHCCVERKESKISQKVKTIILCVTLSIVCICIGCILYRLYSCIKRRVQVDNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H684</accession>
    <name>A0A6S7H684_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like RNase H domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040831</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003321">
        <property type="protein sequence ID" value="CAB3998309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H684"/>
    <dbReference type="OrthoDB" id="6141491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="408"/>
            <end position="546"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="848" mass="97610" checksum="F129C164B6FBFA55" modified="2020-12-02" version="1">MYRLWQTYTVHTPLSSLSTYSLEKAASLPDITDSLRSVLVEKENLPNENELGRIVRGIFQSVKKTQETVKIDGSTKKRWVYSNLVECASQTKLAWSDIITSYSPPKPETSLMCWVQNKCGSDCVQWMIIPSDCTCDGKRLIRELRLYKNSSYEFYVMSQKVSNGSFGHNVETFIPTKEFLDNLFEFCAAVPLCRGFEVDVEKSTHDRHGNIVGSAKRWESTSTDQTSLRHSSKNCCMVLSVTGHSVICKCCANVKFNSFYKTLKPRDVNVDHKRKRESFMTQEELLDKLHEEKKQRINAERREKYAKEKVLEEMKVFHSDDHSDFKTLFDKIEESSLNSEIKLFWEVQRDVLATPNSKGYRWHPKIIRLCLSIWSRSPEAYSQLKASGMLKLPSGRLLSMYKNSVSQKPGLNDDVMQWLLHEADKLNLDSFGREGGLILDEMAIQEDLQLKTANGVSTLVGLVDLGNDNDMMNGAKKVDLASHVLQFVFIGNTGFRFPFAHWPTKEVDPSTLYILFWKAVFWLLKGGINIRYCCADGGEANRSLFKMHFNGKDPVKEKFTVINPYTKEPLFFIMDIAHNVKKLRNNVLKSTHKGTRNLTVEGQPISWKQWVDAFEWDQKTNSLPVHHRLTVNHFELGYATKMRNHLAEQVLNRDMLNLMKVFQENLSKQMGRPVHDLDKAIHFLQATSTLIENLNSHQPYTSMADHRFDEILMSLKWFQTWEEEVKSTEGMRATDRNKLFISNKTMFDVSSSVIGFTEFCKYSFQHHSCCNVYAHRLNSNIVENVFCQQRGRNGQNNNPTYSQYGPTMNSILMGQTSTTKKSNTGKVDSLSFYKPNKLPVNRSKITKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6N2</accession>
    <name>A0A6S7H6N2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025112</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003410">
        <property type="protein sequence ID" value="CAB3998682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6N2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="18560" checksum="46F2A67A13DD9C10" modified="2020-12-02" version="1">MEQAKWEEVVVLWMCGKSFELEEDNDNGCRLSKEKEEWQIVDLENILLKHEFFPDFICGDDAFYDILLRRMLAQLVLCVGVLERPQLGNFAHLSNCKTMLVHEILADVHKRKEQFEKKTGVNLDHYYRLAVTKKRGEKRKQEAVEAHTKLKKNVKLGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H991</accession>
    <name>A0A6S7H991_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004083">
        <property type="protein sequence ID" value="CAB4001424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H991"/>
    <dbReference type="OrthoDB" id="5841748at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.30.30:FF:000045">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046450">
        <property type="entry name" value="PA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003137">
        <property type="entry name" value="PA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039373">
        <property type="entry name" value="Peptidase_M28B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10404:SF78">
        <property type="entry name" value="N-ACETYLATED ALPHA-LINKED ACIDIC DIPEPTIDASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10404">
        <property type="entry name" value="N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02225">
        <property type="entry name" value="PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52025">
        <property type="entry name" value="PA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PA" evidence="1">
        <location>
            <begin position="198"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="37496" checksum="72D42832F3121E95" modified="2020-12-02" version="1">MAAATLTTRRIVGIVVAVVVLFVLGFVIGWVSAPSDEDSTIRVSVPSDENSTCGDENSTSSETYDMKYIAEKRKEEMKTKDGFHEKLIEILNASKIGENLRYFSKRPHVGGTPRSKELADEIEKRWREYKFDKIEQPKYNILLPYVDPDISNSVQILNSKGDVTFEFSGREKLADPSENDTTMIAPLLGYAKQGSAKGKLLYVNYGRSEDFQVLKQNFSISNCSGYIVIMRYGKIFRGDKVKHAQDCGAVGAILYNDPADYAPEGQDKVYPQYIWLPKTGVQRGSIFNGRGDPLTPGLPSVDGVFRLPEDKANLPKIPATPMPYGDAVEVLKIMEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HRV8</accession>
    <name>A0A6S7HRV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A043735</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the dermatopontin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006071">
        <property type="protein sequence ID" value="CAB4008264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HRV8"/>
    <dbReference type="OrthoDB" id="5979326at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030199">
        <property type="term" value="P:collagen fibril organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026645">
        <property type="entry name" value="Dermatopontin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15040">
        <property type="entry name" value="DERMATOPONTIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15040:SF3">
        <property type="entry name" value="SI:DKEY-14D8.6-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14704">
        <property type="entry name" value="DERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4008264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="20078" checksum="ABF0BBBC2503B43F" modified="2020-12-02" version="1">MMKVVLATLFLLIHIICIKAGTNFDAKWTRTCSKGYSISRVSSLHSNRHEDRSWSFRCRHNSKITSSCKWSGWVNWFDREILYQCRNGVIAGWHSYHSNRHEDRRFQFKCCRTKKNCVRNCVWTGYVNNWDAYINYGVPRGYFLTGTKSYHHNGHEDRRWRFLICKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HSK9</accession>
    <name>A0A6S7HSK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075117</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005772">
        <property type="protein sequence ID" value="CAB4007347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HSK9"/>
    <dbReference type="OrthoDB" id="6419603at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18661" checksum="AE87B1602590743C" modified="2020-12-02" version="1">MKKVLPGFAFKKSVERLRKGIKKVLRKDELANKGVADAVSFIETKTMKKWGSLIKFNDPSSKPKNLFEDKTVQFKLVVLGAPDDVLQTFVSGEDQAFFESSTDLLEALVDVISSYYVFHINYPYQMSGILFFIQDFALDVSDTTQRSIKYSSFVAELQSDVHRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HSY9</accession>
    <name>A0A6S7HSY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052888</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005852">
        <property type="protein sequence ID" value="CAB4007619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HSY9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="12004" checksum="A1B403E470594A10" modified="2020-12-02" version="1" fragment="single">KWDLYIVSQCCEKAKAYRALNQQVNQVPAIQAKTTRPWSNKSLNQEPFQRGTKLGPCSLQWVDHVNEVSVKLTLLEHTSKLTQRSRRMPQLAQELHRGLSLTFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXJ7</accession>
    <name>A0A6S7HXJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A017855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006708">
        <property type="protein sequence ID" value="CAB4010206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXJ7"/>
    <dbReference type="OrthoDB" id="1668162at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049:SF1">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="60"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="81"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="22057" checksum="7D26026A34EF06A0" modified="2020-12-02" version="1" fragment="single">KAADAEDKVPDVEDKVADAEDKLLDAEDKIPDAEDKVPDAEEKVPDAEDKVPDAGNKVPVAEHKVPDAEGKVPALRTSSYAEDKVPDAENKIPDAEDKVLDAEDKVPDAKDKVPDAEDKVPDAEDKVLDAEDKVSNAENKVPDAEDKVPDAEDKVPDAENKVPDAEDKVADAEDKVPDAEDKVPDAEDKVPDAEDKVPDAENKVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYR6</accession>
    <name>A0A6S7HYR6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A017819</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020006553">
        <property type="protein sequence ID" value="CAB4009729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYR6"/>
    <dbReference type="OrthoDB" id="5871067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="376"/>
            <end position="573"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4009729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="763" mass="88896" checksum="2751F8D4AA61CB23" modified="2020-12-02" version="1">MALSHLTTERVLAQIERVIQSNHEFRLNDSVRVNLVHVEMPNGGTGTKRSEINLEKHLINKRAIVRIQNKDDLCLARALVVSIAKIENDSRYKSISDFRWPMQTRLAYDLHQKAGVPIGSCGIDQVKQFQTYLTDYQINIVSKEHQNSVIFSGPDKGKRIYLFLHDNHFDVITSMPAFIARKMYCHTCKKGYDHQRDHLCGDMCKLCHFQNCPIVSWISCSDCNRIFKSQECFDRHKQNVGNAKSICLSTAKCPHCNRVFERTQLRTDLHHCGLKRCSTCEKYVGIEDHQCYMQPVKEKPAREADLCDDEADEDVHESGYNELLFFDFECIQENGTHEPNLCVIQNEAGDEWVFQGDNTRNEFCEWLFTKEHEGCIVVAHNFQGYDGYFIQQYLHENGVTPEVIMRGAKILTLYVPMLKIKFIDSLSFIPMRLADFPKTFGLNELAKGYFPHLFNRKENQKYVGPLPPSPYYHPNGMSPAEKETFLKWHQELKENNFVFNFQEEILSYCRSDVDILRRCCLEFRELFRDVTDIDPFEKCLTIASACNLVFRTNFLKENTIAILPPHGYHPGIKQSNIALKWLSYTAEKNDVYIQHKRNGGEKTVGQYSLDGYDEETHTAYEFHGCFWHGCLKCYARDTVNKVSGKTMHDLHQATMEKTQYLKDRGLHVVEMWECNMKKELEHDEDMKQYFEDYDVVDPLEPRHAFYGGRTNATKLFHECKEDEKIRYVDFTSLYPWCNKMTRTVIGRPVSSLKTLMILPRTLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I088</accession>
    <name>A0A6S7I088_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon 412, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086878</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006731">
        <property type="protein sequence ID" value="CAB4010269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I088"/>
    <dbReference type="OrthoDB" id="7697376at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="130"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="25586" checksum="8FD905131E9C6D57" modified="2020-12-02" version="1">MRELCKRLEIQRTRSSPANPQGNGQAERNLAERLAMEVESTDWGLKLPAAPSAMRTVANKTTKETPFYVAFGFEARNPGDVIRDETTTGNNSGKARKGDTTYAIQMDGQRRRKETINHRRLKRHFGVDPTFNNQRTRKTPQTDPPTTRKALSNRTVDENRWQLNDDEEAEATTRNVNERPRPARRPLLCLTYEAGIHQLERSYQNLTKNYKKLQPWIQFFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I397</accession>
    <name>A0A6S7I397_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029581</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003543">
        <property type="protein sequence ID" value="CAB3999238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5967017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1216"/>
            <end position="1236"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="41"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1147"/>
            <end position="1212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="1221"/>
            <end position="1233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1759" mass="199083" checksum="F90135A691E1F1A0" modified="2020-12-02" version="1">MPLDELTKKRTRAAHRGSATKIGTKIKECLANASETPQTDKNVLKQLRETLSEKLEALKLLDNEIVEVLSNSEAEDAEQQLEKEIQETDDTRAELQKIILDVNDALFKAPSLPQGQSTPSNLSMNATPKQTVRARLPKLEVKRFNGKIQEWQEFWDSFDSSVNQNDALSDVDKFAYLKGLLVGPAQTTIAGFTLTATNYKEALELLKTRYGKKTAIQRAHIQALMNIKPVYNERDVRRLRELYHACETNCRGLKTLGVDESSYATIVVPEILDKLPESLRLTITRGASGSDFLSWTMKDILKALLDEIELREAHESSTTNTSKQERRKPQFLDGSAAALVNHTTREGKPRCVYCLQEHLSQDCKKIQNAGERKQILRKYGRCFICLKRGHISSNCLNTSKCSACSKRHHSSICESHANGSITADVVHSTHSCVGSANRVALQTAQALVMGGKENVRVRVMFDSGSQRSFVTGKVAQKAGVPVKRKEWVEIRTFGQEKVEGKLREVFELSVAPVQGGESVSIEVYGVDSISQIRNEHVETRKKDYPHLQGLWFSDVCKTKNVLEIELLIGADYLWLFQEGRTVRGKSDEPVAVQTKLGWVLSGPLKSSSEDDDGPTSCAQVSINLIGHVTSSKNRSLEACVEKLWDYETLGIKHEEEASELLNDSIHFNGQRYSVSLPWKEGHSLLPTNYSCSVQRLKGQLLRLKKEPEVLQEYDRVIKEQLELGIIEPVVELERADKIHYLPHHAVVRKDAKTTKVRVVYDASSKETKKGVSLNDCLHVGPPLSPLLYHIILRFREKRIALVADIEKAFLNIEIDPCDRDCLRFLWVGNIHEDEVKPVEYRFCRVVFGVNCSPFLLNATLQHHLDRFSKGNPELTRKLKDGFYVDDLGRIGRRRTARTAENIELVRQSLTENGQRSGRRNGLALSRTTFQRIVKIDIKFHPYVIIRRQKLREGDPAQRLAFCNRLVNTVARIPDFLDKLLVSDEAVFSLNSEINSRNVRKYAARGDGPPQDHYVEFMQGAQQIMVWVGLTRQGVVLGPHFAERNLDTREYIRIIRYNVIQRDFHTHNIDRDSMWWQQDGASCHTSNATMQYLRGQFPGRLMSKRGDWPWPPRSPDLTVAVTCNTTGFDTILVAAMPRFNVATYVKEQKRLREKVVLENRQLKSLQDEISAAAKLKEEKRKKLNRIREKHRRLDNKVGNLVKAIEDLNDIQNELVQPDSTDQSAANQNNPASASRGRAPTLFNVEGKICTSSSLARQRRKSPFEAARQIHGGQNKISVAAEVGIIDTALVKCSKDILVTAMSSSKKFTKSVLPIIYKKSLKTYEASEDNLIRSVAVYYSGGVTGKKKYRKIYKYSCYRLNKDKTKSISLGTINSVTDTLCYGLDECDKVTGCHRNLKEMLIKLAEFYLSGCTGHSITWFEEPYTFSVAVGGDGAPFGKDDTACAWLISLLNIGRGVLSSNENYLLFGANCSESCIVVQRFIKMLLTDIRDIEKSVMTCSHNGQQENVKFSFTELPNYMKMLPFLSGELSNSAKYFSSFANVSSDDAKNTQATFGRGIENTWKPWMYSYRLKVVNEVEKLKAKLSKQPLSDATKRSKVTSFIAQKKSRQEFEPPLGNIIDKAHVEPLHLKNNACALAHRYLLLEVFEISNLPDSIKLFSQVPSNSPIARYISDMKTKCGLSRLAKRIVRWFNETKAAGKAFNYRFAGKDSRGFLHNFMYLIAAVEPFQKHGSRQEFTLHVLSYLCLMLRKCVTLFNRIEII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6J4</accession>
    <name>A0A6S7I6J4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008170">
        <property type="protein sequence ID" value="CAB4014144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6J4"/>
    <dbReference type="OrthoDB" id="10062389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="20086" checksum="AF2FE3075609AFB9" modified="2020-12-02" version="1">MALDSAKTVGILFVDFKKAFDSVNLTILMCKIQGKGIAGEVYEWLKDYLTDRQQFTDLNGVYSSSQTVKYGVPQGSLLGPRLFKIYVDDLPDNVSEGWVYMFADNTIGHDIGDNIDVVTDKLNQMAGEIYEWCRKNKITAHIGKTEAIILSQQPFYGPVKPICFGDEQIKLVTTTHVIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBY7</accession>
    <name>A0A6S7IBY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase ARIH2 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A015227</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008461">
        <property type="protein sequence ID" value="CAB4014827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBY7"/>
    <dbReference type="OrthoDB" id="10009520at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16773">
        <property type="entry name" value="RING-HC_RBR_TRIAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26000">
        <property type="entry name" value="UBA_ARIH2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="15"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4014827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25753" checksum="D63EE74F2707C5BB" modified="2020-12-02" version="1">MSSGNAEGDVSLNTDESDSDDYYNYDDIDDDVVLQDESERDPELFDYRLITQEDAENMLDCFVDETAKKLKESRSVSRILLTVFHWDADNILQRYNACQRSLLTETRLMPEKSIPSLKPANECEVCFQGINAPMEFVMQCGHTFCNNCWINHVTVQLEHGVALGIECMKCNILVGSDNLLSLKLNCKELKRFKFFLLNDQIKRMLRKTINTLPDMNAAMEIPAST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IEJ4</accession>
    <name>A0A6S7IEJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A046463</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004963">
        <property type="protein sequence ID" value="CAB4004661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IEJ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="25"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="127"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18479" checksum="8C5A142B0E5921AE" modified="2020-12-02" version="1" fragment="single">MGTYEIEEYFWWRNWVKLVKMKDEVLLAAILLAAAVLLLILTIIMLCIVFKFVKTKSSVEKKSSEIPKTSHNYDNSAFQRTSDIGAHGNEQTNNRQVSYYGNDSDQHKSEWPTSYNMYAVSRSYAFPKAGDQSEQSSELGSRAHPSNPPSTIASRSSTIDTRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHB8</accession>
    <name>A0A6S7IHB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031199</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008841">
        <property type="protein sequence ID" value="CAB4015780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHB8"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17316" checksum="664CE635F5D0AAB0" modified="2020-12-02" version="1">MKQAKVIPNSISNHDVVMSTLTLKKCRPKPVYVSVRSFKNYNPEAFCEDIYNAPWSVINNFDDVNDSLNAFDVLFNGILDQHAPVRKVKVRVRPHPFVTEEIQKLTRIRDCWRKIARKIGDPVRGLLTGTTNGMLNGNYVKHKDCMWSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIV6</accession>
    <name>A0A6S7IIV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031390</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009621">
        <property type="protein sequence ID" value="CAB4017606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIV6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11336" checksum="F1A4F67EA44010B5" modified="2020-12-02" version="1">MKRNYFHGKSAPLPPDPGVFAKGVNNLFSDLEGTSRGPRQVLSVRCGISNARKLVFVGPKILIHEQNIKLIEQEERWYEDMSVNLIWHMKCSSSKPGLEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJE7</accession>
    <name>A0A6S7IJE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Metabotropic glutamate receptor 3-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A005863</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010353">
        <property type="protein sequence ID" value="CAB4019214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJE7"/>
    <dbReference type="OrthoDB" id="425344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.30">
        <property type="entry name" value="GPCR, family 3, nine cysteines domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000337">
        <property type="entry name" value="GPCR_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011500">
        <property type="entry name" value="GPCR_3_9-Cys_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038550">
        <property type="entry name" value="GPCR_3_9-Cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017978">
        <property type="entry name" value="GPCR_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050726">
        <property type="entry name" value="mGluR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24060">
        <property type="entry name" value="METABOTROPIC GLUTAMATE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00003">
        <property type="entry name" value="7tm_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07562">
        <property type="entry name" value="NCD3G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00248">
        <property type="entry name" value="GPCRMGR"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50259">
        <property type="entry name" value="G_PROTEIN_RECEP_F3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="576"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4019214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="576" mass="66621" checksum="EAA70A3D6E2B5B5F" modified="2020-12-02" version="1" fragment="single">LAITMIWRQSKPSITTFSKILRKLVHSSLNNFVLKIEEPCPQMRNLVHIIEEPCLQMRNLLHSIEEPCPQKSGPLVKNLVLKSEEPCPQNANHENINSCRIKFNILDTEMLRRQIVVISISMRSFCKKRFIIKRTSLNSNPRFNAILGELMQVTTPEVTILMFNLCLIKILYGNRPSWVLERVFAVKTRFMCMGVMANRVEAFEKYLANLSVEKMENTFWFKRFYEQIMNCTFGNTSGTMQRCNLIIDALQNTRPGITHRYSRSQWQDRLNMNSTAISNLNLFSVKAQCSEQCNDDQIQERIHGKPICCWTCVKCPEDSIVMNKTSCHACAPGFLADTKRGRCVKIPEIYYSLEKRVSKFLVVPPLVFSFLGILGVIFTMCIFVRFNSNPLVKASGRELCYLLLTGLFLSFVFPIVSILRPSRFKCLAQFFLDSLPITISFVSIAVKTNRIFRIFDKNRRLNNRPLFMRPLHQIILSFLFIFIQILMLLILVIAQFPEENLVYFSLTEVHLVCSTSKVQILLSHLYNLILIVICTYYAFKIRHVPGPYNEAKIIAFAIYPFDSKTGSTRRRDEALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMG9</accession>
    <name>A0A6S7IMG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Tyrosine- kinase transmembrane receptor ROR2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A046100</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005683">
        <property type="protein sequence ID" value="CAB4007051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMG9"/>
    <dbReference type="OrthoDB" id="411811at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004175">
        <property type="term" value="F:endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005102">
        <property type="term" value="F:signaling receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00108">
        <property type="entry name" value="KR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000001">
        <property type="entry name" value="semaphorin-5A isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.2000.10">
        <property type="entry name" value="Frizzled cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.20.10">
        <property type="entry name" value="Plasminogen Kringle 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020067">
        <property type="entry name" value="Frizzled_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036790">
        <property type="entry name" value="Frizzled_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000001">
        <property type="entry name" value="Kringle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013806">
        <property type="entry name" value="Kringle-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018056">
        <property type="entry name" value="Kringle_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038178">
        <property type="entry name" value="Kringle_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050759">
        <property type="entry name" value="Serine_protease_kringle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24261:SF7">
        <property type="entry name" value="KRINGLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24261">
        <property type="entry name" value="PLASMINOGEN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01392">
        <property type="entry name" value="Fz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00051">
        <property type="entry name" value="Kringle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00090">
        <property type="entry name" value="TSP_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00018">
        <property type="entry name" value="KRINGLE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00130">
        <property type="entry name" value="KR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00209">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57440">
        <property type="entry name" value="Kringle-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50038">
        <property type="entry name" value="FZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00021">
        <property type="entry name" value="KRINGLE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50070">
        <property type="entry name" value="KRINGLE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 7" id="KW-0420">Kringle</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="219"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="240"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4007051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="54278" checksum="3EA2DC8B83095DB2" modified="2020-12-02" version="1">MMGVVSFANCCGTVVILATIFSTNVAGKHYLQDRNRTCIPAEAEPPLNSSSCYPLVNFTRPFCQNHGITLPNYVYDTPYRQNNRNDEGNKDFDEIVKIGVSRISRFSQVDISNVRKCAQAAAKWFCRQYFPSCDRTQSVFKEQKICRESCLVLTRTCGKLWEMFVKYYTIQYPDSKKLYQCELQPYRNAGDSPECWYLNGLANSTDTFPPPELTTNADCLYLNGSSYHGNISMTASGISCQSWTEQCPHRHTMNKTYPELNKAKNYCRNPQNSGQRPWCFTTDRNKRWEYCDIPKCIPVDGSYGNWSLNSTCNETCGEGFETWTRECNNPKPKYGGKNCSHLGEPVEYRPCSAKACPVNGGYSNWTLIDGIYSNWTTSPCSATCGQGVEIRTRQCDNPPGKYGGNCSKQGPAQEIRKCEIKPCPGKNNVQWSVMIIQLFPNSRVSLSQSPYALLSQSPYALQHMVFSQKTLDSGGHFLKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN78</accession>
    <name>A0A6S7IN78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031548</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009888">
        <property type="protein sequence ID" value="CAB4018180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN78"/>
    <dbReference type="OrthoDB" id="6421164at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="28480" checksum="6B8478629672B3A7" modified="2020-12-02" version="1">MATQFYLTLPSNSSLAYFPNNTVANFRVKLAETIVLPGQWEVALTELHYPHTWSTLKRGVQQTFLYKIGSNPYQTVVLKETQYSSIEQLTKALNAGMLKETQTKVKFSYNRSSRKVLVDVKHDTTVWFTGELATVLGFDQDTLIEKKTSSPYPADINGGFSSMYVYTDIVDAQFVGDVKVPLLRIVNIEGEYGNTVHASFRNLQYVPVKVNSFETIEVNIKNDQNENVSFEFGKSIATLHFRQKRSQYFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INH2</accession>
    <name>A0A6S7INH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009937">
        <property type="protein sequence ID" value="CAB4018280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INH2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="96"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19824" checksum="3992D1609995C9CC" modified="2020-12-02" version="1">MEQVVDEKAENIVSNEIKENLNGDVLKSNETDTERTCTGCSDLEKQVAILGEELESLKKKFERTEKLLEKAEFERESSSKYVESFREQVSQLHEKLAAERKKNENLEKPVQENGEDKGESSTAQEKADTEMDIASSIREAAKEIASSVRQEIASSIKEASKNIARRVAVGMLDAATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQ50</accession>
    <name>A0A6S7IQ50_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089804</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010637">
        <property type="protein sequence ID" value="CAB4019816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQ50"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="26308" checksum="34223E1E7C80D897" modified="2020-12-02" version="1" fragment="single">HESHRVLEIENLYWESLVSRVLGNYEECDSYRRLGMQQMESCPPDIIGAWFFFQEARAIERLISRNPCQMSNLIPQARLCYIEALRQASMLEESTSVAELKQRCHTRLAMLHLGCFFHESEITRTQEVVQHDIEEAEKMLEVVNRSSRVQGWPLTEFCRCEYLLARAQQNVRNWQQLHDEYFLESAEEESRTAHDICEKKNFQEMMNFVDAELDEINHLNCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-10-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J243</accession>
    <name>A0A6S7J243_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013935">
        <property type="protein sequence ID" value="CAB4025985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J243"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="74" mass="8138" checksum="3CD57C48C9EB4A6E" modified="2020-12-02" version="1" fragment="single">PAIATNEDRSKSTKVKILFDSGSQLSYITDTIDRKFGWLISGPTNNGLCNEICTTNLAVLEIEATLIKQSPYTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J6J6</accession>
    <name>A0A6S7J6J6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034346</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014896">
        <property type="protein sequence ID" value="CAB4027596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J6J6"/>
    <dbReference type="OrthoDB" id="6782434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="36074" checksum="E7BD78A2EBD0FF01" modified="2020-12-02" version="1">MLKHVTTRWLSLNTSVNRILSGYEGLKSYFLSEDDEDSKIPRFARLRKHFENPMTEIYLMFFQAVIPTFTTVNKFLQRGEPVIHLLLDQLESFLKKLAGKFIRIDAIAAANKVCEIDFSDDGNIKEEDKMFVGITTRGKMMKMLNDGDLDPQQVQRFYDAVDHLEMSVEEQEKLQEQFIDYQLLSNNNIPQHVWNDATVKTDEDGTACLFRMDVIWGHLNATKSADGTPRFDLLARVALTVLCLPHSNAEEERVFSMIGKNKQAERSSLQVKGTLSSIMTVKLADLNAKTFTPPVSVLKAAKSATYEYNKAHKRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JI08</accession>
    <name>A0A6S7JI08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">5-hydroxytryptamine receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A071583</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015609">
        <property type="protein sequence ID" value="CAB4028620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JI08"/>
    <dbReference type="OrthoDB" id="5959645at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008188">
        <property type="term" value="F:neuropeptide receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24238">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24238:SF57">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTOR 83"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0807">Transducer</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4028620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24934" checksum="7961128AA20E09F3" modified="2020-12-02" version="1">MTTSKSLKIIFVIWLISTAFATYAATPNSGSLEILATSEKHCSPVDDNKTIEFYTFLPICVFFLPTVVILVMYALIFVVVHKRQKMLRNGELGQTCNDRNQRRAFLQDLKTIRMLLVVVGVFILCWGPYFICPFYYPNSADSHNRSLSYWYLFYAGLTLVKTLPLFNSLCNPIIYACLDQTYRGAFKNLFQRMRCRPSSTRQPLRNGIELPPLRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JKP2</accession>
    <name>A0A6S7JKP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107344333</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016232">
        <property type="protein sequence ID" value="CAB4029530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JKP2"/>
    <dbReference type="OrthoDB" id="6771815at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35385:SF2">
        <property type="entry name" value="PROTEIN B, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35385">
        <property type="entry name" value="PROTEIN B, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="34689" checksum="879C6BD85E8034E1" modified="2020-12-02" version="1">MFSALEERIKDLQENDAEYTTEYQKFDETINQPFIIMVVITPLMKRVHKLRWLHEKKNGISLEDRPPLLLAFKKIIYRENEDDIHDLFDAVITSDMTSKYPNFNKYVTDVFEDCEAWALCYRIQVPVRGNNTNNLCEAQFLVIKDEILNRQKEVNVVGLMDKFTTELDQHYRNKLLSGINVGCNMFLVPSLSEEGVLYLVDMNTGFCQCKIGVNGSPCKHQYIMWVNKLSVAVNFLPIFSKEQRMMYAEIAMGATFPLHFYEGLHDQVISLPATDVPCPDQFDQTRTGSEVPEATFTSPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JKR1</accession>
    <name>A0A6S7JKR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024717</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018933">
        <property type="protein sequence ID" value="CAB4033076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JKR1"/>
    <dbReference type="OrthoDB" id="5948131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="27213" checksum="260A36A0FE298A85" modified="2020-12-02" version="1" fragment="single">MVLVDYKKAFDMVDHCILLDKLGANHLDQSSLDWFKSYLSDRKQYVNFKRQSSTKKVITDGVPQGSILGPLLFLVFINDLPLHINTQVDLFADDTTLLAATDYNDINELNEKLSLEVSNVQNWAITNKLPLNTTKTKTILISGKRLKAKLTPENQTLNIKLNDDSLEQEHTVKLLCFNIDEDLNFDTHVDIIAMKLSKRIGILKSIKSYLPRKERILFYNAMIKPLFLYCSITWTNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JP91</accession>
    <name>A0A6S7JP91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018698">
        <property type="protein sequence ID" value="CAB4032791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JP91"/>
    <dbReference type="OrthoDB" id="449241at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090560">
        <property type="term" value="F:2-(3-amino-3-carboxypropyl)histidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017183">
        <property type="term" value="P:protein histidyl modification to diphthamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016435">
        <property type="entry name" value="DPH1/DPH2"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00032">
        <property type="entry name" value="Radical_SAM_3-amino-3-carboxyp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="13896" checksum="02D7AB394365BB8F" modified="2020-12-02" version="1" fragment="single">AREWSGEYITDFQELLPGAACHVDIENKNTEEEEVPDISLISGQLRPVCAQKENNNVKSESLVLRNQNTTLSTQHHTSAAEFLAQRSWKGLEVKRGETQVTKAVEGRSGIASGYTHELVQDDDNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPR7</accession>
    <name>A0A6S7JPR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">E3 ubiquitin- ligase RBX1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A052522</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018146">
        <property type="protein sequence ID" value="CAB4032124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPR7"/>
    <dbReference type="OrthoDB" id="8962942at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051031">
        <property type="entry name" value="RING-box_E3_Ubiquitin_Ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024766">
        <property type="entry name" value="Znf_RING_H2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11210">
        <property type="entry name" value="RING BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12678">
        <property type="entry name" value="zf-rbx1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="6" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4032124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="61" mass="6877" checksum="FD07747010C7BC54" modified="2020-12-02" version="1" fragment="single">TFVQLHTEMCSWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQQSATSEECTVAWGVCN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSV2</accession>
    <name>A0A6S7JSV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006179</name>
        <name evidence="1" type="ORF">PACLA_8A049033</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010521">
        <property type="protein sequence ID" value="CAB4019552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020023709">
        <property type="protein sequence ID" value="CAB4038016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSV2"/>
    <dbReference type="OrthoDB" id="5982225at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14673" checksum="9BBA6CB3E391552A" modified="2020-12-02" version="1">MVIKQHEQSRKSASAKNRATRQLEVGDMIEVTSGVIWRRHIDQLLPTEVKLSTIQDREQTANMGVVQPEVISSSSEQTLPIIAADLQVQQGSSTHELVNESTTETSMPLATTRERRYPERVRKPPVRLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVN1</accession>
    <name>A0A6S7JVN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086228</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022527">
        <property type="protein sequence ID" value="CAB4036896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVN1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11319" checksum="2F234EBF775309C6" modified="2020-12-02" version="1" fragment="single">MIVVLSGSTARLKWSFRGKLSQTTLLWHFTRRGSSNEDVLIAGKFGTRVNAQVFASSSPGVAIETPATLVLNNVDECYNGKYRFTVQVYGGIAQYAVVEVFIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDG3</accession>
    <name>A0A6S7KDG3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Fatty acyl-CoA reductase</fullName>
            <ecNumber evidence="1">1.2.1.84</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a long-chain fatty acyl-CoA + 2 NADPH + 2 H(+) = a long-chain primary fatty alcohol + 2 NADP(+) + CoA</text>
            <dbReference type="Rhea" id="RHEA:52716"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:77396"/>
            <dbReference type="ChEBI" id="CHEBI:83139"/>
            <dbReference type="EC" id="1.2.1.84"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the fatty acyl-CoA reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.84" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020033317">
        <property type="protein sequence ID" value="CAB4043836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDG3"/>
    <dbReference type="OrthoDB" id="6512824at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102965">
        <property type="term" value="F:alcohol-forming long-chain fatty acyl-CoA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080019">
        <property type="term" value="F:alcohol-forming very long-chain fatty acyl-CoA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035336">
        <property type="term" value="P:long-chain fatty-acyl-CoA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026055">
        <property type="entry name" value="FAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013120">
        <property type="entry name" value="FAR_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11011:SF45">
        <property type="entry name" value="FATTY ACYL-COA REDUCTASE CG8306-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11011">
        <property type="entry name" value="MALE STERILITY PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07993">
        <property type="entry name" value="NAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="65" mass="7463" checksum="F94AA8C7790293A7" modified="2020-12-02" version="1" fragment="single">MKGDMSEPFLGLSEDDQRLLHETVEIVFHSAATVRFDEELRLALKLNVVGLEHVLELCRNVKKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDZ3</accession>
    <name>A0A6S7KDZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A022050</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033795">
        <property type="protein sequence ID" value="CAB4044016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDZ3"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="109"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4044016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="345" mass="39456" checksum="273B08C1D68D956C" modified="2020-12-02" version="1">MATQWSRSLTETESRYAQIEKELLAVQFSLDRFHQYVYGKEVIVESDHKPLEMIAKKSLALAPPRLQRLLLRIQKYNYTIVYKSAKEMALPDMLSTAPLPETDEEMGKKTLKKTRKSQRMARSERESVPLSVLPYWNIRAELYFEVVKLPDTKSSTVITYTKSIFSQHGIPAEVVSDNGPQYSSREFEAFAGSWEFKHTTVSPLNPQVNCLAERTVQTIKDLLASPAQLLMNRGLRSRIPQTISQLKPRVPDPVAVKKKLNLKQQKQKFYYDRQSKSLTKLHERDIIRTDDGGKYRRNGRMLLKSVQPDPVAEGMFSGEIPSTRIRSIPSPENVEALVTPDATQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFU0</accession>
    <name>A0A6S7KFU0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040878</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014114">
        <property type="protein sequence ID" value="CAB4026282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFU0"/>
    <dbReference type="OrthoDB" id="7764353at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="1">
        <location>
            <begin position="254"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="375" mass="43463" checksum="EC64DB9BF6513C31" modified="2020-12-02" version="1">MLFSLFINDLPSVLDTASITLYADDSTPYHVAENANLISENLHNDLLNVEEWIRKNRLVLNVEKTKSILIGGRQRIKVAQPLNLSMKNKSITQYSCVKLLGVQMDEALSWKPHCDGLLKDCSKALGLLYRFSKYIPKTALRSIADALILSKLNYCCTVWGSALNRNSLDFLQILQNKVARLIVGCKIHEKSRKELHNELNWLTVRQRIYMRTAMIIHRTLYSKEPFTIFMQLHPLIITHEHETRFASKCKVSGKIWHKEYFLSLREQHRGSLSVTKEISINIGDVVSVHDENRSQAKWRLARVHELIRSTDGKIRTAVIKIAGDNKKPTYIRRPVQKLFPLELRNEHTPKHEKEDRRSRRKAAILGEIKRRCVDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KG34</accession>
    <name>A0A6S7KG34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084054</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036365">
        <property type="protein sequence ID" value="CAB4044816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KG34"/>
    <dbReference type="OrthoDB" id="10068383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="234"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="241"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="35200" checksum="A2C198241E3C032A" modified="2020-12-02" version="1">MATGRINVAPMAPFDPMSDPNSLSQRWKTWKRRFETYLVALNVTEKKQKRALLLYQAGQETQDIFDTLVDIGEDNDYDSAIAALDTKLAATCDFENIDKEVKSAIIQNCLSKRLRRYALLDSEITLAKILAKGRAFELSESQATGIENALDSTHISDEVVEAVHPTTKHNNHRDKQHTSFHRQDFYTSSECRNCGGPWPHNNNICPAKGKSCLNCGKSNHFAKVCRSARKVRVGQQENRRPSKKYHKNKVHKIYGTPSSSESSSEDEFIFTPKPTCRDKTTPQVQISVNTTHPYQHGYRHWCFHRHHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KG39</accession>
    <name>A0A6S7KG39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052833</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the VPS13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027692">
        <property type="protein sequence ID" value="CAB4041050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KG39"/>
    <dbReference type="OrthoDB" id="428159at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045053">
        <property type="term" value="P:protein retention in Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026847">
        <property type="entry name" value="VPS13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166:SF93">
        <property type="entry name" value="INTERMEMBRANE LIPID TRANSFER PROTEIN VPS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="287"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="302"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4041050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="39878" checksum="28874D5142B1C93B" modified="2020-12-02" version="1" fragment="single">ENWKDSRGEAKSSLHVLNPFGLNIQLYKCLAADDVRLTQIRLAGVLSTLQLHVTDKRLDDLMKLALSIPIPGEQDPATPAKTKTTSIQREVKPVVNVSPLDVAVQEAIKSETSEDVFKTPPESPENSGDDIRIQSGEDEEALKLAKAEQTNVAVKFEIGQINVTVSSQDQFGIESPLLEVDLLRLGTQVSVRQYDLTVMANIGDISVKEMIHGIDGVPLELVSTPADLDILAVKFVQADKSHPRFKEAFNLTEKAIDVQFASLKVVLHQEALLNLMEFANSLLPASEEEIQPQQQQEELEGSSDKSQDKTDEEKKALAKKKTQEDEVIEVKVDARLGEFTAVITSMKGDVAHLQMKRTAFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KN97</accession>
    <name>A0A6S7KN97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon opus</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015521">
        <property type="protein sequence ID" value="CAB4028502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KN97"/>
    <dbReference type="OrthoDB" id="441285at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="344"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="344"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="722" mass="79695" checksum="ECBC6B79EE3176B1" modified="2020-12-02" version="1" fragment="single">MEITAAEKIEIEKSIILTIIKGKESLESLTVAQLAEEYSTRYKCAIACYKAEFVCVEAFLKYACGVNIIDEKVCLSTSSTNIASSSEKATGETSSSVHLVSKPQFSPFFGFSDGDKNKGVAYNVWRFEVESVIKGAFYPDEVILEQIRRSLQGEAKAKIVGFGSETSCESILGKLDQFYSDVGAATGDELLAEAYQMKQGENEEVAAFASRLDSCLRWAKRRGTEILPDDESVERQLRMLFWGGIKESIKDKARYKKDNCKTFAELITAARYGEKELGSNHSSRKFARANQAIYQEPGQKSPPQPHNDGDKKEWIAEICTAMAKEVREVLKDQAKPTDARNVETHHYAKKDRRETNEDLCQGATRGSKREYKCPHLEKSAYVLKELIGDATEAVAFINGHACLALLDTGSQVTSIAKLFYDRHLFNQPIEPIENIVRVVGAGGQEVPFLGYVTIHVSFPETDVGIRGTLTTLALVVPNNSYNQRVPVIIGTNLVKQCRNACQQIAGQNFLQTAKVSSAWKRVYHFVQSQDRFLQRQDSFGAKVKSTSRHPTTIAAHETKILMGLANSCPGSLTQVVVETSMGSDQVAGIVVTPGLVTVGPHKSSCRVPVEITNNSDHTVVIPAKAVLASLKIAKDVITPTATENTATVLYQLQSGKKRVLATITCIRRRWEPKGHNCRQGLLGNGQTERFNRTLLGMLGTLNGGRERTCGSRISHSDYIKRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KP30</accession>
    <name>A0A6S7KP30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042972">
        <property type="protein sequence ID" value="CAB4045888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KP30"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="53" mass="5939" checksum="8A6550205DE8902A" modified="2020-12-02" version="1">MEKRTPADITIQAKVYNRRSKSPSGRSGPPPMQRIAEKRLAASSRLEDSKQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KY11</accession>
    <name>A0A6S7KY11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045455</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018555">
        <property type="protein sequence ID" value="CAB4032623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KY11"/>
    <dbReference type="OrthoDB" id="26681at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019901">
        <property type="term" value="F:protein kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008104">
        <property type="term" value="P:intracellular protein localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050865">
        <property type="entry name" value="BEACH_Domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023362">
        <property type="entry name" value="PH-BEACH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13743:SF112">
        <property type="entry name" value="BEACH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13743">
        <property type="entry name" value="BEIGE/BEACH-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16057">
        <property type="entry name" value="DUF4800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14844">
        <property type="entry name" value="PH_BEACH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51783">
        <property type="entry name" value="PH_BEACH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="658" mass="74859" checksum="4ABEA6E83EC320AB" modified="2020-12-02" version="1" fragment="single">VFAGLASSLRNTESDGFTEITLIELGLSSSVELRDLRVYEDYCIVLPVVALVQSKSTSVKLHIAQTLLKSVEESQMSATKCAHEVAWYDPIWRLLLKPQNDAGNQETDLIQDLLETVVKVVFKILWFGIEGYNDEAWKARGEVIASVSTISSVEDFIVPSRELERRLLELSLAQVLEDIERSGETGVKESMSALQVIKLVDDFIFTSGSIAGSVENESLSTWSTKLVETMVRLLGCLNVWNESDGNPGWAEMAEMGDKILLEFLLQDKPEFCAYSSSMIYTVWQNRQIDCQEKVCYLLGKVYEAFKISKNKEGDSKYTFTLPLLRYILQQYGDLVPLTTYVPDFPTRSLDNADYEEQFLQCVDSEEFAALMKQQIIPSMKKYQVSLAKSSIDSGRFWMECLNGLTNSLQLRETSEEESKTKFQEIVVLFKEIEETAQSDYKNRRLEEKAQYNRVLQQWQLTKRDLESEIGIWENRSVDENYWKLSTTENFSRMRLKLTPNYYFNPHIEASRLRDTGAVTGPADEAKVLAGAVADQVLLKHYAAERLEETGNVEFPQAVESPSAADSVSNAAPSTFDCELITLMETVPGRVNISSTSVSFTATERQSVLDGSSWDFKIALNQLRELHLRNFNHRRSALEFFLVDQTNYFINFTKEVAFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L302</accession>
    <name>A0A6S7L302_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019714">
        <property type="protein sequence ID" value="CAB4033983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L302"/>
    <dbReference type="OrthoDB" id="1601181at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004520">
        <property type="term" value="F:DNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000712">
        <property type="term" value="P:resolution of meiotic recombination intermediates"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd10454">
        <property type="entry name" value="GIY-YIG_COG3680_Meta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034998">
        <property type="entry name" value="ANKLE1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46427">
        <property type="entry name" value="ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46427:SF1">
        <property type="entry name" value="ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22945">
        <property type="entry name" value="LEM-3_GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22618" checksum="FD5B818BFA3D7A25" modified="2020-12-02" version="1">MILTGRAEIPDFNTLEQEMVKEFCKSPRKVQWRGGTEKSSFNYLLLDPRVTLDLPQRTKKLPSTEAFRCFILSIFYVGKGKRSRPYAHLHEAIKYAKSKSNQKLDQIWDIWRDGMGVISLHLFQSAIPVEAFTREACMVEALGLSQLTNQKRGEYYGLCANLDLKKKRKLGIFLLHKAFQIFLQEGERQICQEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LGH1</accession>
    <name>A0A6S7LGH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089172</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021935">
        <property type="protein sequence ID" value="CAB4036352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LGH1"/>
    <dbReference type="OrthoDB" id="408373at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="70" mass="7865" checksum="97BE8DB1C0778923" modified="2020-12-02" version="1" fragment="single">MVLCRLLWSIIREGTHILKCTPIEQAPACLEDKSLGVHNYVTTKSKVKFHYVANGEVGKPLMLCLHGFPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQK4</accession>
    <name>A0A6S7LQK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015038</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027525">
        <property type="protein sequence ID" value="CAB4040952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQK4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="15697" checksum="D6496E43093995BE" modified="2020-12-02" version="1" fragment="single">MATSTSDRPPKRGRPKLGIAIKRIGLQAQVYDEWIIKKNSLGFSEKSNSDFANYLLRISDEQRGQTSPSGPCHSTPMGKQSRPQLCDYSPIFAMEDEPSHDEILDVTGISSLNVSTVESVSVTLNPEFGVYAGDISADSLSEDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D678</accession>
    <name>A0A7D9D678_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045196</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000082">
        <property type="protein sequence ID" value="CAB3977960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D678"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="219"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="228"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="29132" checksum="4FFF3161425A8477" modified="2020-12-02" version="1">MDEITNYISDEEELNEKIETENDEHDDDDDDDDDENDENNAENTPAIENNDKCDNEEEEDYSEEERNYSADDEEEINNEASALFLKQIWDAHCMTIQKQKQSKFLPATKKFLAAGFAQKEKMLNNNKQLISHMVFLCRNIANGKIPLNISECERALFTYISDKATHRSDVRLRLLEEFTVQYYCKLAIKQIEKSRGINSEDDDNGRRCKTFDVDRYRKIQHDDQKPRSISRKQANSKRGKTNNGRRGIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9K1</accession>
    <name>A0A7D9D9K1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Timeless homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A015310</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000238">
        <property type="protein sequence ID" value="CAB3979882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9K1"/>
    <dbReference type="OrthoDB" id="310853at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031298">
        <property type="term" value="C:replication fork protection complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000076">
        <property type="term" value="P:DNA replication checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043111">
        <property type="term" value="P:replication fork arrest"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044998">
        <property type="entry name" value="Timeless"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006906">
        <property type="entry name" value="Timeless_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22940:SF4">
        <property type="entry name" value="PROTEIN TIMELESS HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22940">
        <property type="entry name" value="TIMEOUT/TIMELESS-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04821">
        <property type="entry name" value="TIMELESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Timeless N-terminal" evidence="5">
        <location>
            <begin position="28"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="309"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="318"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3979882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="375" mass="44061" checksum="CE5F578AE7BF89C7" modified="2020-12-02" version="1">MVDAVVNDYVNSEIVCTLAALGYTEDNEYYKGDDCLECLKDLIRFLRVDDATCEIRRQLGRSQAVEKDLIPLLSSCTPKEHDIFDVCIRLMVNLTQPAMICFGKVPKEKMERHWFLEVTSHLQSYKEAFAEREIMTVIGRELGRLLQLEWDNREEEDTLLIERILLLLRNILHVPADPKAEKRTDEDATIHDQVLWNLHANGVDDLILYVASSPDESRWCMHALEIISHMLREQKADIVAKTAVRRTRKEQEEDTRELEIMYEREKASKNSASQKGIRHSNFGGTYYMQNLKALNDENKLLYHKPVQPAGETTATTKQPQQQPPQQQQQQRQQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH31</accession>
    <name>A0A7D9DH31_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Vacuolar protein sorting-associated protein 53 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A028059</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endosome membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Golgi apparatus</location>
            <location evidence="1">trans-Golgi network membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the VPS53 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000902">
        <property type="protein sequence ID" value="CAB3985677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH31"/>
    <dbReference type="OrthoDB" id="10261632at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000938">
        <property type="term" value="C:GARP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042147">
        <property type="term" value="P:retrograde transport, endosome to Golgi"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.110">
        <property type="entry name" value="Vacuolar protein sorting-associated protein 53, C-terminus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039766">
        <property type="entry name" value="Vps53"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031745">
        <property type="entry name" value="Vps53_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038260">
        <property type="entry name" value="Vps53_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007234">
        <property type="entry name" value="Vps53_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12820:SF0">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 53 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12820">
        <property type="entry name" value="VACUOLAR SORTING PROTEIN 53"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16854">
        <property type="entry name" value="VPS53_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04100">
        <property type="entry name" value="Vps53_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0967">Endosome</keyword>
    <keyword evidence="6" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Vps53 N-terminal" evidence="9">
        <location>
            <begin position="2"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="Vps53 C-terminal" evidence="10">
        <location>
            <begin position="497"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="595"/>
            <end position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF16854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3985677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="632" mass="71730" checksum="BF389F3F16692047" modified="2020-12-02" version="1">MLTRKRQYKEVANLLQGVLNVLEHFKKYFGIPQISELADRVKTIQNELGTQVLTDFEEALSIRGVKPPAGPNSLLSEACQVVCVLDSKVREDLIKWFVNLQLEEYVQLFSDTQEVGWLDKIDRRYSWLKRALVKFEEDFKETFPLEWHVEEKICEEFCHITKNDLGKTMSSRTSDIDVKLLLFAIQRTTTFEGFLAKRFAGSLYETNQESREAEKNKIAAAKESRFLGLISRCFEPHLHVYIQSQDKNLSELLERFVTDFKSLGIPQVEGDGSNVILPSAGELFVFYKKCLVQCSQLSTGPPLLSLASTFQKYLKDYATRVLSANMPKTVTQSGGLASILKDNEIKFSKEDQTLACCILCTADYCLETTQQLEEKLKEKIDVELSEKIDLVNEQDVFHSVISNSIQLLVQDTENACDAPLIAMVKVHWQSIEAVGDQSAYVTAIATHLQNIVPVIREYLTSVRKYFTQFCVKFANSFIPKFISQIYKCKPISTVGAEQLLLDTHSLKTILVDLPLLLSNVQRKIPASYSKVVTKGMEKAEMILKVVMSPHDPPVGFVDNYIKLVGDADTSNFQKLLDMKGLRRSEQHAMLDVFRSRLPTPSTPDAKKTTSGATPELESSRIKRLERLIKKQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DHC6</accession>
    <name>A0A7D9DHC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAM173B, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A000502</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000761">
        <property type="protein sequence ID" value="CAB3984609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DHC6"/>
    <dbReference type="OrthoDB" id="66144at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016279">
        <property type="term" value="F:protein-lysine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905706">
        <property type="term" value="P:regulation of mitochondrial ATP synthesis coupled proton transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026170">
        <property type="entry name" value="FAM173A/B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13610:SF9">
        <property type="entry name" value="FI06469P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13610">
        <property type="entry name" value="METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3984609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="34680" checksum="900ED34E43EEEEE2" modified="2020-12-02" version="1">MVNQDGVKSKFGLVALGVTGTIVAGLFVGTLPFLTPALRRICLPYVPATNTQIQNILQMCKGRSGRLVDLGSGDGRVILSAIRFLTIENLGEIEYFYHRKCFQKFVYAKTLLKRKTSQDGCQGSNIKLQKSTRKTSQRQSDEATGSRGLFPNICMICKKKELRVKSVRQSLSRIVTDTAERTLKEAAIAHNDLEMMTAVTETDLKAKEFQKHEKCYLDYTRVVRKTAESTEGGNDDKQSGDYNVVLSLVDSDIIGGQQCLSMETLMTRYCGNIGTRQSRHKLKERLTKSFGDQIVFLQLKQNIIFRKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSE6</accession>
    <name>A0A7D9DSE6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A041995</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="10">
            <dbReference type="Rhea" id="RHEA:17990"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:46609"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. GCN2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020002009">
        <property type="protein sequence ID" value="CAB3992250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSE6"/>
    <dbReference type="OrthoDB" id="5956925at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004694">
        <property type="term" value="F:eukaryotic translation initiation factor 2alpha kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017148">
        <property type="term" value="P:negative regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00180">
        <property type="entry name" value="PKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050339">
        <property type="entry name" value="CC_SR_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11042:SF160">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11042">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0652">Protein synthesis inhibitor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="11">
        <location>
            <begin position="153"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="11">
        <location>
            <begin position="687"/>
            <end position="955"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="11">
        <location>
            <begin position="987"/>
            <end position="1263"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00037982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00048977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3992250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1270" mass="145676" checksum="390C39653A962180" modified="2020-12-02" version="1" fragment="single">TTDLSSGLCDILRRIILEKNLLDKYFPGRVSRHTPDGGTAYVEILMMVRSFELRNFAVSIQRILEDLNLYQSIYCTIFYAKTWSKGKSCTSYTKFRLESVKAKSIQRIIGKPNLRSVILNRILEEYFKSRLWIEAYEGHLETDESVLEPEPKLLCFHDLRIGKFAIVFNTSNKIVVNESYVASQVTSHSEWQVNSKILPRNREKNRFVRKYAGTNSVDAIDIYLRLTCDQSHVEMSTGSFYKSMDHTKVSITLCRKINLVLLPSFWRSLPSPRYEDNWTGELKSKEDFSAEVYMIFEYCPGGTLSDRLQKPSTKAMDIKWMRQLAKAVAYIHALALVHRDLKPDNVLLSSKDNIKIGDFGLARDFVAAKRENETWANYYMSAACGTLFYMAPEVFEGHYTEKEERECFEINGMKCYGIFILLPDQDRAPLGLQMHIDKTGLKVPFTKCSPKLAQIIGSALLFDQNSRADAATIHGNYSAEMIMKAAIVCHMQICPNCLTLVQDDLDTRKSTGTSCQIEIHFMIKTTEYLLIYSVMWICCDFGTHQQNCYRKLPYIINYYLFKTIYINGPIFPDCSEIIEVHNHKGQDKLFGGFVHHTLEQNELLYNRKLIGHFLVHHNSLKSSRVMNVELWYSDFLLFENTHDYLRVKVYDKSLQNMVAMGQMLTYQTANQAVAMCNNALKYDWPRYRYSKTVGAGDFGEVYLVHDTKTTGRAYALKKIKCGSNDDLNNVTQELKCKEDFSAEVYMIFEYCPGGTLSDRLQKPSTKALDIKWMRQLAKAVAYIHALALVHRDLKPDNILLSAKDNIKIGDFGLARDFVAAKRGNETWANYYMSAACGPLFYMAPEVFEGHYTEKADVFALGVLLYAIEERQCFEINGMKCYGIFILLPDEERAPLGLQIRADAATIHGKFFCFDSSKTTSREIPYDCLIINRAIQQYENDYETLQAAIVCYRERLKLSKLFNFATIHLNSISTKSTMSSHHLSQVTYTREAKLGEGAFGTVYKVKAYAGENRTTYAVKDIKCTKNEDLDSAIDEIRALGNLVHTNIIKLYNVKVSQTDPFQATLSLLLEYCGKGNLNDRLNRPSSRRQNFSWMRQIINAVEFLHKHDTIHRDLKPQNVLLTSNQVIKLADFGLATRFGQKNDNQSWYSYYIELGIGQACYVAPEILSQRYTYKVDIFAVGVMFYAILERTFQVVSGGNVYGVFVGNRRQPLGLEMFNKKSDVDLQFTRTTPQAVVQLLKRTLKFDYKQRPTAEEIRATLERNLPSNCVIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSW2</accession>
    <name>A0A7D9DSW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010599</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001968">
        <property type="protein sequence ID" value="CAB3992042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSW2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18369" checksum="677E69FC1582E771" modified="2020-12-02" version="1" fragment="single">MGRIFFETANRASQLIDRSFNCSFDTGPCGWKLKGSAGEKYDTELKQYVDSFKHNQKGILRSPKIVASKACLTFQYMSNSWWSLDHSRMFVYVKDAESKQLLPVNDKLLYYGHSKWNTIKIDLNIVNGFTQVVIDFTLVKFYVSVANFVLYTEIESCGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DX09</accession>
    <name>A0A7D9DX09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002541">
        <property type="protein sequence ID" value="CAB3994808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DX09"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14748" checksum="A3A9468ABE716ADE" modified="2020-12-02" version="1">MTNTNTSVSDRAENSRILLTKKGMSDTELDKIKRRLKKNGWLYVEKKDAVDLTDSERLRTVMMMTSPFIELNLTVGKGKNTNHLLHKLNEDGWKIVRIIPVSSDRRCIKMIREVFSHTETPYGKPGTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E905</accession>
    <name>A0A7D9E905_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent oxidoreductase domain-containing 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013002</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004466">
        <property type="protein sequence ID" value="CAB4002841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E905"/>
    <dbReference type="OrthoDB" id="66881at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005788">
        <property type="term" value="C:endoplasmic reticulum lumen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036503">
        <property type="term" value="P:ERAD pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.50.60:FF:000300">
        <property type="entry name" value="FAD-dependent oxidoreductase domain-containing 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050982">
        <property type="entry name" value="Auxin_biosynth/cation_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43539:SF23">
        <property type="entry name" value="FAD-DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43539">
        <property type="entry name" value="FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13738">
        <property type="entry name" value="Pyr_redox_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="618" mass="69947" checksum="347F7C84E3ED5F0D" modified="2020-12-02" version="1">MMACKIGLLFLVIALSFGVYSTTSSEYDYCVVGAGPGGLQIAYYLQKANRNYIVFERGSSAGTFYKKYPRHRKLISINKRFTGKTNKEFNLRHDWNSLISDDETLRMTRYSKEFFPQADVLVQYLNDFATKLNLSTSYNTNILNVSKDAFNDVFILKDQNSKTYKCADLIMSTGMSTEVMPTFKGAEFVETYGSMSLDQEDYEGQSVLILGRGNSAFETADHIITSTNLIHLVGRSRVRLAWATHYVGDLRAINNGLLDTYQLKSLDGLLEASINTQMTLVKHDDKYYVDVYGGTGRMINNTGVGPDNFAIRDPYDRILSCLGFKFDFSIFEESAQPGPCEGKKKKFPSIKGNFESTRVPRMWFAGVVSHSLDWRKSAGGFIHGYRYTARALHRILEWKNHGVKWFHHEIRTLDVLNMIVKRINEASAPYQMFGVVVDVVIYQPGGKAFYVEEFPLQLVPQLQRYTGLPEGPILVINLEYGKGFSGAGKDPFREDRATGDPADAHNSNFLHPVIYFFRTPPTELIGGSKLPKPDRIHHIVEDFLTNWMAPNSHIIPLRRFLENVTEKDLRNFFAQSCFKLAMTHSTLPLACQDQYLKGSGLPGVQNLIAFAQSKELLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EB21</accession>
    <name>A0A7D9EB21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">DNA topoisomerase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A049108</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004822">
        <property type="protein sequence ID" value="CAB4004161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EB21"/>
    <dbReference type="OrthoDB" id="687730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050877">
        <property type="entry name" value="EMX-VAX-Noto_Homeobox_TFs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24339:SF28">
        <property type="entry name" value="E5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24339">
        <property type="entry name" value="HOMEOBOX PROTEIN EMX-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 5 6" id="KW-0371">Homeobox</keyword>
    <keyword evidence="4 5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="DNA-binding region" description="Homeobox" evidence="5">
        <location>
            <begin position="52"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4004161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="371" mass="43701" checksum="DF6A3C6808C84059" modified="2020-12-02" version="1">MADNWEDVAEYLLRNRRLREMVDDVLNSLDEIGPDCRFTTDGNRKHEKRSKNKRGITKPDLIQKQRLLKEYQMTKYLTQERKKELARELNLSQVTVKNWFQNRRRREALLKRNKTVNKIRRMSIRKDDDGVPCLVPRNVDIKISEVLKSETRQLNYQNNLSGFVVTQDENDKVSHSEENVLHCEENDPHSEDKVPHSPDKVSHSEDKLVHSEGKVPHTDDKVLHSKDKVPHFKDKAFHTEDKVFLSEDKVSHSEEKVLHSENKVAHFEEKVPILEDKVSHSEENVLHCEDNDPHTEDKVPHSPTSFVNLRTRFLTLRTWFFALRTRFSILKTRLLTLRTRFFTLRTRFFILRTTFLILSQGTSLLGEGSSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDQ2</accession>
    <name>A0A7D9EDQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine- kinase Tec isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053869</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005862">
        <property type="protein sequence ID" value="CAB4007644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EDQ2"/>
    <dbReference type="OrthoDB" id="269496at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00174">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.40">
        <property type="entry name" value="SH3 Domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036028">
        <property type="entry name" value="SH3-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001452">
        <property type="entry name" value="SH3_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00018">
        <property type="entry name" value="SH3_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50044">
        <property type="entry name" value="SH3-domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50002">
        <property type="entry name" value="SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12635" checksum="6AB85763D684ECD9" modified="2020-12-02" version="1">MDENWYIAKDKYGEKGIIPANYVRKKIGSGSELWFVGDLMKHAIKEGTNVVALYSFRAIESASDKLSFEKGDEFTILGHAEEGWYLAKDKDGRPIMKDVYSLIGGNPCEPGDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ER89</accession>
    <name>A0A7D9ER89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008314">
        <property type="protein sequence ID" value="CAB4014464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ER89"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29190" checksum="67CF09781BE5B73F" modified="2020-12-02" version="1" fragment="single">SSPDGLNPESRCIVIVGDFNIPSISWSDNDSTPISSGGCANSEVLCELIGDNFLQQFVEGPTHSAGNKLDLFFCNRAEVISNVLTSPSDEHNFSTDHYIIEFNISTKFTRAKPVRRVIYDYNHADFPTLRRALSETSLDITLTGSIDDCWWKDTFLSIVTSFVPIKTIQGTNFPPWIDGEVRYLIRKKYIALRKYRKNKTASIEYFVSANSSKSNTQLELNINCISRKLKRHSMKTRRWSGVTIKPFFTTKLLSIQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWS0</accession>
    <name>A0A7D9EWS0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ankyrin repeat domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009751">
        <property type="protein sequence ID" value="CAB4017884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWS0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24121">
        <property type="entry name" value="NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24121:SF23">
        <property type="entry name" value="NO MECHANORECEPTOR POTENTIAL C, ISOFORM H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="31574" checksum="29C1EBCB8C70B953" modified="2020-12-02" version="1" fragment="single">MEDSKILRNDLEKAIMEDDVERLKKIIEEGHSSRLTEIACGYMSWAVYQCSVNCFEYLCGAYEQLTNSSRTQVTWHRTGSPFFRIVKECNWAAIRIAEKHGDLMNYLVDEPTESQESTPLLIAIQNDYEEVAKWLIKEPEKKPDIEKRNAQGESPIYLAALKGQAEIIKEMLEIYSCSPERREILFAKENLYGKGHSIFYPASQSRKAAILDVLMEEKSASLFLRKELQHSEFQQFVLGSCLSGSEKILKAMLEVDQNLPIGRFRDEKGATSLMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HA91</accession>
    <name>A0A7D9HA91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048188</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000209">
        <property type="protein sequence ID" value="CAB3979569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HA91"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="143"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="170"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="244"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="27228" checksum="063F41873E277AE9" modified="2020-12-02" version="1">MSETNASTALETKLFQLQLTTKRTDGILAKSEEEPIARHQGTLRTVIGEVENLRLTVEAEKLGRKEDTTEWSEEIDTKISEADSHVRLTKEWLAENKRKLEEMENDEKIKFERLNPRNCVYCDSGEHKTNDCAKVTLTSALVTGSDPVPPPVVTGSDSIPPPVVTGSDSIPPPVVTGSDPIPPPVVTGSDPIPPPVVTGSDPIPPPVVTGSDPIPPPVVTGSDPIPPPVVTGSDPIPPPVVTGSDPSSTPHCERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAK8</accession>
    <name>A0A7D9HAK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041452</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000144">
        <property type="protein sequence ID" value="CAB3978823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAK8"/>
    <dbReference type="OrthoDB" id="2417635at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="342" mass="39075" checksum="20EBFB2F62FC09E0" modified="2020-12-02" version="1">MVNKLCPETTALIRLYKNETELKYRKIAARCGVSKSAVHKKCNTKLRRKLVPKISNGRVGRPRCLNERDERSLLQAVKTLQKTSVNFSVKDVIQESGLDPSIAKRRTISLYLNRAGYHHLQARKKGLLSESDKKIRTKYARNAKKLLKDSPKFYTHDISFYLDGVSFVHKYNALKTALQPKSHVWSKQGEGLEITSKGSNDLPGGRRLHLMVAVAYGKGVILRKAYEKIDGSFFAGFVKENLNLCFAKAGPRRGRQCIFVMDKIPARSPDLNPIENIFHVVKKQLEEEAINMRLSKESFQNFHDRVCHCLDNLSVDLVDWTLETMSNRITAILRKKGIRSKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC65</accession>
    <name>A0A7D9HC65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposase ORF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000241">
        <property type="protein sequence ID" value="CAB3979905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC65"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11183" checksum="655E67D5A6EFB566" modified="2020-12-02" version="1">MADSDLHIADEVLNEGQGLEGVNTIGKKGEEEEHPWPFLKSMFRYNGRVGRENKSIKFICCLCSPLVREISAFISSPSNLRKHVQGSKNLKLPPGNSSDVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQS7</accession>
    <name>A0A7D9HQS7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glutathione peroxidase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A085450</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the glutathione peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001202">
        <property type="protein sequence ID" value="CAB3987605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQS7"/>
    <dbReference type="OrthoDB" id="446890at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004602">
        <property type="term" value="F:glutathione peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000889">
        <property type="entry name" value="Glutathione_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029760">
        <property type="entry name" value="GPX_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11592">
        <property type="entry name" value="GLUTATHIONE PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11592:SF88">
        <property type="entry name" value="GLUTATHIONE PEROXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00255">
        <property type="entry name" value="GSHPx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000303">
        <property type="entry name" value="Glutathion_perox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01011">
        <property type="entry name" value="GLUTPROXDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00763">
        <property type="entry name" value="GLUTATHIONE_PEROXID_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51355">
        <property type="entry name" value="GLUTATHIONE_PEROXID_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 7 8" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3987605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16378" checksum="1AF224A2DD981FAF" modified="2020-12-02" version="1">MNVLVEKYQSKGLHILGFPCNQFGHQENCKNEEILDILKHVRPGDSFEPKIEMFSKVNVNGKDVHPVFQFLKSNLPMPSDEDPDGLFMANPTGIQWKPLLRSDIRWNFEKFLVDKNGIPYRRYGKTFPTIDLATDIEALISQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HT14</accession>
    <name>A0A7D9HT14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075712</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001554">
        <property type="protein sequence ID" value="CAB3989803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HT14"/>
    <dbReference type="OrthoDB" id="5984417at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="34219" checksum="D9AB96E4509CECCD" modified="2020-12-02" version="1" fragment="single">MYKALSDELWVLGQIFMRANRIILPENLWKQTWSLAHEGHQRITRTKARLREKVWWPNMDKQVEQLVKACYQCQVVGPRTKPEPIRTTTLPEGPWNDIAADRLEIPGGNHLLVVIDNFFRWPEVVLVKKTEAQHIITAMEGIFRTHGLPQCIRTDNGPPFALKEFESFLQHLGIEHKKGISYWPQSNAEVERCNQTILKAIRIAILEGTSWKIALENFLFQYRTTPHSTTGLSPAKLLMGRTLRDKLPRLTIPEDRATEAEWQQRLRERDALNTLRQKKYADKKDLQNTALLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HX47</accession>
    <name>A0A7D9HX47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028604</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002569">
        <property type="protein sequence ID" value="CAB3994936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HX47"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="690" mass="79210" checksum="E302339266F87F18" modified="2020-12-02" version="1" fragment="single">MTDCLSYFSKSLAKINPNKLFVIPSWIPKLSDPEVQFNLDPPIYQQITNVIRKMKSSGSPCPLDQLSIISFKHCPYLRTYLTELIHDIWLSGTVPTEWKRACTILIHKKGNNNDPSNFRPITLESIPLKVFTSCLRKAVYSFLPSNNFVEHNVQKGFTPNLSGTLEHTAQMADIINKARIRQRSVVITLLDLKNAFGEIHHNLIQSVLDYHHIPDHIKFVIKSLYTDFQTSIITSEFRTPFMTVGRGVLQGDCLSPLLFNMCFNTFVQHIKAEKYRQFGFSFKLLNPIHWFQFADDAAVIIGQESENQHLLNRFSIWCQWSDMIIRVDKCKTFGIKKAITKSVQYLPKLFIGNQLIPKIPIGESFQYLGRYFDFHMSNDNHKTELTTLLNELMTDIDSKPLHPKNKLLLYSRYVLSKLAWHFTVATLSKTWCQTILRKALKSSPNESTNDLWKATSNHTNIQYDAYSSAKEVLKDFRSGHENKLLNQLTSQGSFFCSVTKFALPQLNKVRSIAQSKLPKNIYNFTIRYINNSLPTRKNLNRWAISSNADCSFCLSPETLLHIVAGCQFYLDRFTWRHNSVLNVLANTLQTVDGSTLYADLHGFKSPSILTGDTYCPDLLLSCSNGSLYVVELTTGYETNLKNNVKRKKDKYRELLRQLGKNFNQVKFINLSISSLGIFAEECSTFLDMLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXJ7</accession>
    <name>A0A7D9HXJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phage antirepressor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A038348</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001832">
        <property type="protein sequence ID" value="CAB3991352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXJ7"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014883">
        <property type="entry name" value="VRR_NUC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180:SF2">
        <property type="entry name" value="BRO FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08774">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="312"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="386"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="401"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3991352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="415" mass="47665" checksum="44E4A698D5554BE1" modified="2020-12-02" version="1">MEKLFRNPKLNVSVRTVKSGEKVLFYAKDVAESLGYINPQKAVRDHVWKTNRTTVGEFQRVTDSFTMEKSHSDTVLLYEPGLYQLVCNSRLPIAEAFQGWVFGEVLPSIRKIGSYKLPESEPLYCKQMKLINETDLHYAVVEYLKKYHPKALILPGLGEYQDTSYKRCDAWRKGYMGGQPDLTIVTPSNGFHGFAIELKTPKGTGEVRDNQVSWLKVLNENGYRTLISNDYTKIVLDIEEYFRVDKIKKLLEEIKNLKIKCRTLKASKCKEVVIRQIGYTVVNLSYLISRIKDNLQDKTQLNLRYLTSRMEDKPEQNQVPVTSEKKKDPKRVAAGKRLGAISRIAKERKRKQAEPNESSSNDSMITYIGVAIALISLVLAYKTHQRETREPEPEYIPKTVEVTRKADESKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6T3</accession>
    <name>A0A7D9I6T3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">CBP80 20-dependent translation initiation factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A025401</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003525">
        <property type="protein sequence ID" value="CAB3999148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6T3"/>
    <dbReference type="OrthoDB" id="6484979at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008494">
        <property type="term" value="F:translation activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006446">
        <property type="term" value="P:regulation of translational initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003890">
        <property type="entry name" value="MIF4G-like_typ-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051367">
        <property type="entry name" value="mRNA_TranslReg/HistoneTransl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23254:SF16">
        <property type="entry name" value="CBP80_20-DEPENDENT TRANSLATION INITIATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23254">
        <property type="entry name" value="EIF4G DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02854">
        <property type="entry name" value="MIF4G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0810">Translation regulation</keyword>
    <feature type="domain" description="MIF4G" evidence="5">
        <location>
            <begin position="63"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3999148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="32047" checksum="AA0A50AA1B4F9796" modified="2020-12-02" version="1">MATAPVKTSAGRGRGRARTSASSLNSPGGNGHEFKKYVPILNSAEPKVVNVDTFKPVEESLGLCLREITPENLQSCLSKAEEFAITDEKIKKVVSSLFEKSLKDRRLAANGGQVAATLISSEKIGPTFRNMFLKKFQETYTNRDKQRKTDFEKYLCFSVFLCSIFKDVRVNGEVMNILTKPVFKPVFNMLGELLDGKNVEVSQTEKGMEIFRDNLSMIASLLQAADQGQMDELFKKVRSNIIKEASHKISCILLETFEYYSSGDWTPKDETKDFYNSLMADITAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IC81</accession>
    <name>A0A7D9IC81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073058</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005390">
        <property type="protein sequence ID" value="CAB4006024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IC81"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12815" checksum="2474E1CE580BB825" modified="2020-12-02" version="1" fragment="single">VLPTVTPESVAKKLLSIQSHKAPGPNDPYLKIIKMFAHFFAIPLANIFNASFGQKVFPKLWKEFRLAPIPKVEPCTNLDEIRPIALTSTISKIQESYVVDWVYDDIESKICKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPW5</accession>
    <name>A0A7D9IPW5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007025">
        <property type="protein sequence ID" value="CAB4011095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPW5"/>
    <dbReference type="OrthoDB" id="6436901at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="53"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="163"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4011095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="25128" checksum="9A4C8CDDEB8D4135" modified="2020-12-02" version="1">MAINNRPLAYVSDDDLDDALTPHHLIHGRNAFKQAKAIDFVPTMDLEKCKRRLLHVRKVLRDCWARFRCSYLNELRQMNIYRKTKGENTRRISVGDVVLIKDDELSMRTQWRMGKVLELVKGRDGQIRGAKLKVLSKKGKQTAVFRPLQRLIPFEINENHDCMSEQQQKESNDSVDKDENVNEPAATVNEETSAKRPTRKAAVEGQNLRRLREQYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPX0</accession>
    <name>A0A7D9IPX0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Heparan sulfate 2-O-sulfotransferase hst-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A061879</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the sulfotransferase 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008318">
        <property type="protein sequence ID" value="CAB4014477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPX0"/>
    <dbReference type="OrthoDB" id="10019582at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007734">
        <property type="entry name" value="Heparan_SO4_2-O-STrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005331">
        <property type="entry name" value="Sulfotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12129">
        <property type="entry name" value="HEPARAN SULFATE 2-O-SULFOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12129:SF15">
        <property type="entry name" value="URONYL 2-SULFOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03567">
        <property type="entry name" value="Sulfotransfer_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4014477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="37286" checksum="95D28FC7A8711509" modified="2020-12-02" version="1">MEAVKLNQKRNMSKGCFQNSSIPKWLSANNQSSYHPRMKQTKYLMNVSDHSCRPLYPQVLLYNRIFKTASTTMASFLEKCGKKLKYVIRKEQTEEWSNRKRSHPILIRIRASAKRNKRRYKRLLAVAHFYFRIDSGIKMKHTYINLLREPIDRFISHYYYARSPHRWPKKLRRLKAKGHWNVTLEQCLEKQYEGCKWNIMTRFFCGPEGFCKTGNMEALSQAKYNMLHYYSSIGVVEHLNEFIQVLHKRLRKFIIKPPRTLSKTFVTTGVEKKPISNRVMTRIVQANQADIELYNYGKTLFLKQAKQCGIKVKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRL4</accession>
    <name>A0A7D9IRL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nuclease HARBI1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007240">
        <property type="protein sequence ID" value="CAB4011702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRL4"/>
    <dbReference type="OrthoDB" id="5986837at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042054">
        <property type="term" value="F:histone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006560">
        <property type="entry name" value="AWS_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51215">
        <property type="entry name" value="AWS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="608" mass="67961" checksum="5DB22E3E6B4FAD56" modified="2020-12-02" version="1">MTSGPEIARLVNEFELNQPEDMSTHHEVQKSFQTSFGNDVKSLVATFEELGNPFLDQGDDLVALDTKEVAPPDALERLKNIEIKGKSQCDEFVLERLEERKSSIFDPIKRNKLSFFTSALPKKTAKFQQQLSSVKSDCALFSRLYISCQTRDGDLDDFFMHENQGCPPSLSNQGKLRLPKKKSELVDCLLGDGTAAQSTRETVNVTIIDGAVAVNMIRPSKEATFEDYALKSFLPYIETQSRLVDRIDVVWDVYIQNSLKHTTRCNRGAGVRRRISASSPIPRNWGEFLCVDENKTQLFKFLAEYLSNLNTEKQVITTVGNQVLCTVQRDLTCLAPCSHEEADTRIILHVQDTINRGYTRITIRTVGTDVLVLAVAALPLLSGPTQPELWLAFGTGANLRYIAAHTICANLGPQISKALLFFHAFTGCDTVSCFAGKGKKTAFEVWKLYPEVTDAFLLLASEPQEVSESCMISIERYTVLLYVRTSNKSTVNEARKQLFAQKGQSLDAIPPSRAALVEHTRLAAYQAGHCWGQALKPRPVLPSPESWGWTLCEGQWEPYWTTLPDVTQVCRELVRCGCKKGCRGRCSCLKVNLHCTALCSCDEECNNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IU67</accession>
    <name>A0A7D9IU67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009414">
        <property type="protein sequence ID" value="CAB4017123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IU67"/>
    <dbReference type="OrthoDB" id="5976674at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14659" checksum="5668D24C51E263C5" modified="2020-12-02" version="1">MDSVEAVNKKKLSMKWTKEHDKELLKEMLMEQAWPILEEKYRRKMREEINASGISPEADEIDQLLEEIIALFDSNEEVREKEKGIAEDIRLKALETVGETKRRKSETTSDSESEQSENCQTGKRGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IVN2</accession>
    <name>A0A7D9IVN2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009548">
        <property type="protein sequence ID" value="CAB4017442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IVN2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15495" checksum="41E4940D18C7C335" modified="2020-12-02" version="1" fragment="single">LWEPGDGSRNITMTINTRNGRPPNAGEMMALRIIMLIIAIGAILKDVLQIVDKKLLELTGKIKALNFAIKKSDEVIDSTKTEVLTRQISSITNRIQAIYALKEEIEEIKFTDNDSEENIRDWAEEIESRIRKQITK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IVX6</accession>
    <name>A0A7D9IVX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">40S ribosomal S2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008312">
        <property type="protein sequence ID" value="CAB4014462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IVX6"/>
    <dbReference type="OrthoDB" id="10038899at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17469" checksum="CB523F1D8D61094C" modified="2020-12-02" version="1" fragment="single">ESEPILDCNVEIATATLENEESNQQGNQIRQNEIDNSNVYPLLDDRSLHDDLQNLPVTRVLKIRRVNIMQDMIENFKEKSIMQIHVKVVMINSFGKEELGVDDGGVFRDALSAFWSSFYDSCMVGEEERVPVVRHDFKEEEWEAIALILVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3X5</accession>
    <name>A0A7D9J3X5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040548</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011425">
        <property type="protein sequence ID" value="CAB4021421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3X5"/>
    <dbReference type="OrthoDB" id="7735550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00087">
        <property type="entry name" value="FReD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020837">
        <property type="entry name" value="Fibrinogen_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143:SF327">
        <property type="entry name" value="FI21813P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00186">
        <property type="entry name" value="FBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00514">
        <property type="entry name" value="FIBRINOGEN_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23224" checksum="46B7B73138C58461" modified="2020-12-02" version="1">MQDGEFSVDPDGEGSFQVLCDMTSDGGGWTIIQKRFDGSVDFNRSWTDYKDGFGEFDSEFWLGLNKIHRLTSNETNTLKIDLTSFATEYKHASYSSFGVGDETSNFILIAKNYVGNSGDSLKLHDGMMFTTRDNDNDRSGWRNCAKAFTGGWWFHDCHSSNLNGIYHNGHYSTAEGDRDGVVWEAWKGQQESLKETVMRIRPSNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6U5</accession>
    <name>A0A7D9J6U5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">CCR4-NOT transcription complex subunit 11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A074589</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CNOT11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012312">
        <property type="protein sequence ID" value="CAB4023094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6U5"/>
    <dbReference type="OrthoDB" id="10265389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030014">
        <property type="term" value="C:CCR4-NOT complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031047">
        <property type="term" value="P:regulatory ncRNA-mediated gene silencing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019312">
        <property type="entry name" value="CNOT11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15975">
        <property type="entry name" value="CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15975:SF0">
        <property type="entry name" value="CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10155">
        <property type="entry name" value="CNOT11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0943">RNA-mediated gene silencing</keyword>
    <keyword evidence="8" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4023094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="355" mass="39860" checksum="FA2E9A792A87B755" modified="2020-12-02" version="1" fragment="single">SNQTNDENYSPLNSLPILSSPEKLFLSQLLTSPSKDLLKKTPRQILIMDVTGAQLNDISVIQANLSQQHALLPHLVKSGLPAVIADPDHDNSPGFDRSSVLQIVETLVTGENAPSEMSFKPQFIRVAPPLYHCEDEFVWMNPQEEKPKIEWDKSMCASNNLGSEVHQLMAKAFKTSLTLQQQQQVLAELENDPNFVYHIGLTPSKLPELVESNPLVAIEVLLKLMESNQITEYFSVLVNMEMSLHSMEVVNRLTTAVDLPQEFVHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIIDVKDIFIEVQAFCIDFSRIREAAALFRLLKNVEKGEGADQDGGLGPTTQAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBZ3</accession>
    <name>A0A7D9JBZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014172">
        <property type="protein sequence ID" value="CAB4026403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBZ3"/>
    <dbReference type="OrthoDB" id="6433957at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24274" checksum="50F13D296C0E861B" modified="2020-12-02" version="1" fragment="single">MATKTPSGFCNDVNTFLWIISNYKYCINEIVPINDILNAALEEEVNLNAISLGMLIQDVWEGKVKKQKRDHGSRFLNLKKRSINGIHRNNTTIHELNDTTIENIRLLCGDRPGWILNSSLASTKSVTLTHLLNPDRNEGVTIDGHHLTLELKIDMTTTPTITISTCGKEVSLSQIKGESITKITLQSIDEAICLLENASPCIGHAICSDDESEYLKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JCD6</accession>
    <name>A0A7D9JCD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Fibroblast growth factor receptor homolog 1 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A089385</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014353">
        <property type="protein sequence ID" value="CAB4026695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JCD6"/>
    <dbReference type="OrthoDB" id="6159398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052598">
        <property type="entry name" value="IgSF_CEA-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44337:SF20">
        <property type="entry name" value="CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44337">
        <property type="entry name" value="CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4026695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19911" checksum="4452815F5B9F517C" modified="2020-12-02" version="1" fragment="single">PKNTQATFGGSATFYCYGVTLNEQHITWSKGNHILTASKKYKILDNNRQLVINNVNEDDIGEYRCKISDVHGDTSATAFLTTVNLGSQHGGSSSPNTAGIVVGVLLCILVILIILYFVHRYHRHGATPADVIKDVKRKTFSRFQSPTHHTVLKYDTSEYNDDEDEVYDTSDTNPFVRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JFC4</accession>
    <name>A0A7D9JFC4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Exocyst complex component 2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A018670</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Component of the exocyst complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the SEC5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015555">
        <property type="protein sequence ID" value="CAB4028555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JFC4"/>
    <dbReference type="OrthoDB" id="26242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000145">
        <property type="term" value="C:exocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006893">
        <property type="term" value="P:Golgi to plasma membrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029175">
        <property type="entry name" value="EXOC2/Sec5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039481">
        <property type="entry name" value="EXOC2/Sec5_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13043:SF1">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13043">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT SEC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15469">
        <property type="entry name" value="Sec5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Exocyst complex component EXOC2/Sec5 N-terminal" evidence="5">
        <location>
            <begin position="60"/>
            <end position="531"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU365069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF15469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4028555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="539" mass="61391" checksum="55401035C8BE9E67" modified="2020-12-02" version="1">MNQHKWLLGLLDNCRFDHLGKKTHGPGALSVPVYHSPRRESLDNYGGWGSKGHAPLQGVIFVEELSDILAESLPDLWKLGNEYVSGSLFHKENMDPEKPSFVPADERKLEFQAMVSEITGRYSGFIEEVFVGVYKREPEKKTQWNCRREEITPWLPKCVKFVRRCYSTLKTQCGKSSVEALKSVQLSLEDLQFLSTRCLMENAVEEIRNLYQNEDWSKETISNGCVITILPITFETIAIDILHLLKDVIGEATFGGEKGDQIQKEINDLFYKMLQAVIESLEHLGFPSDEELDKISVSSRHHYGSFDSKEDVHSMTSINSPARDERFLIVLSCCSYLRDSVLPKIVSNYQSNGHAGLENLLPAFKSEIMTLEDRIFNAYVELKSGPLVSRIKTGMFAGDFSWSRCLQPTDARDYIKIVILELVIIHAQVFSVSASFVPRVLSRLTEILTETIYKLFKDAKGKYTTNGIIQARLELKALGEALHNWLTEKSSSFLENSFRCIPAISKDEHQKEIDRLLEEFKARANFQLLCFEESDCLDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JL14</accession>
    <name>A0A7D9JL14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089479</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017826">
        <property type="protein sequence ID" value="CAB4031687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JL14"/>
    <dbReference type="OrthoDB" id="6022388at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035437">
        <property type="entry name" value="SNase_OB-fold_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002999">
        <property type="entry name" value="Tudor"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00567">
        <property type="entry name" value="TUDOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50199">
        <property type="entry name" value="Staphylococcal nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63748">
        <property type="entry name" value="Tudor/PWWP/MBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50304">
        <property type="entry name" value="TUDOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13393" checksum="8D958BB3C40164DA" modified="2020-12-02" version="1" fragment="single">VTVRYIDFGNTENIKKETLVELPPSLADTRPFAHLYHLAGCEVANDPGANEMTYGLGVEQLKNLVIGKLINVKFLSENSHGGVNVTVSYPGETGKSINEMMLDGGCVQKMRGEQETIDSNHVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JST6</accession>
    <name>A0A7D9JST6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061188</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021399">
        <property type="protein sequence ID" value="CAB4035818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JST6"/>
    <dbReference type="OrthoDB" id="5989102at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="22293" checksum="D48E20C15952C571" modified="2020-12-02" version="1" fragment="single">LSIYIHRFKNYIKESALILTSENTDDTIADMDALAHVYNKTLSALLNDHAPLKSTTKAVRPTMPWYNNEIDDARKKRRKAERKWRISRRAEDLVMFKRLKNYVTHLLNKARRDFYTEFVNENSSNQTSLFRAANILLALKLNNVSFPKQMDRNILVNDIGKFFVHKIIKVRAETNSNDVDEIDRALVPTNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JWJ7</accession>
    <name>A0A7D9JWJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043834</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022847">
        <property type="protein sequence ID" value="CAB4037219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JWJ7"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12656" checksum="A5B65A060E41D9DA" modified="2020-12-02" version="1" fragment="single">MDIAKAFDTADHFKLLQKLQEFGVSGSLLLWFKNYLSGRFQRVTVHGATSTTLSITSGVPQGSLLGTFLFSVYIKDLPSYVSSSTWVGLFADDTKLYRCIKNPSDALVLQENIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K5S8</accession>
    <name>A0A7D9K5S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027468">
        <property type="protein sequence ID" value="CAB4040919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K5S8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051941">
        <property type="entry name" value="BG_Antigen-Binding_Lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713:SF6">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713">
        <property type="entry name" value="FTP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="17765" checksum="5CB7A8E5417670AB" modified="2020-12-02" version="1">MVYLLPISLDPYRWLISYRKPATLSSTEGELYASFATDGNFKTIYTEDPGTNYSATLLESTPTLQIDLEMSVPVFRIHIKGIEYNGFDPGQTYLTVRVGDNPTVGSTENPQCGSTMSVNKWQRMTCGKKGRYVNVIRAVPNSGSQFKLVEVAVLKKPLGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K746</accession>
    <name>A0A7D9K746_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017394</name>
        <name evidence="2" type="ORF">PACLA_8A028675</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020626">
        <property type="protein sequence ID" value="CAB4035021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020029922">
        <property type="protein sequence ID" value="CAB4042334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K746"/>
    <dbReference type="OrthoDB" id="6417614at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12214" checksum="4045714A0F5636D2" modified="2020-12-02" version="1">MINLLRHKPYLELLGTSEPDQQQALLETASAEQVHCLCLCVENVMKRKYLMPKHVMKKLQPYKNEMLRLADRGKCGRRKKRILVQRGEGFLGLLLSPILESLAELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K7E1</accession>
    <name>A0A7D9K7E1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosome biogenesis BMS1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012849</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028427">
        <property type="protein sequence ID" value="CAB4041504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K7E1"/>
    <dbReference type="OrthoDB" id="10249565at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030686">
        <property type="term" value="C:90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034511">
        <property type="term" value="F:U3 snoRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000479">
        <property type="term" value="P:endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039761">
        <property type="entry name" value="Bms1/Tsr1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12858">
        <property type="entry name" value="RIBOSOME BIOGENESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12858:SF2">
        <property type="entry name" value="RIBOSOME BIOGENESIS PROTEIN BMS1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13579" checksum="54B7EB45497EC0E2" modified="2020-12-02" version="1" fragment="single">MAAEGEDERTAKAHRERKSGPKAEKKKKRKQAQNEDGNQKNPKAFTFQSTVRAARQIRRKLDVQTKKHHVPLVDRTPLEPPPIVVAVIGPPKVGKSTLIGSLLKNFTRQNLTTIKGPITIVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L9G0</accession>
    <name>A0A7D9L9G0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015513">
        <property type="protein sequence ID" value="CAB4028489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L9G0"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="232"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="38217" checksum="A49171BC7D64093D" modified="2020-12-02" version="1">MTVTTPEACNYESLYVSQLLSTPNMTEYSHLHNHRRSHATSTCLSPVSPSKKLMRGLHIAMNFSISMILISLSNDIATNPGPTYNFSIPPPNVRGLKITRLNTGSILPKIDVLRLEMKDKPFDIFSASETWLKPDISDSEVALPGYSIIRMDRQNKVEIDVASVVKQLSTLKTNKSTGLDGISARLLKDAAATIAPTLTDIFNQSLKSSIFPKIWKDGKVTPIFKSGDRSNMSNYGPITVLPILSKIFERFVHTQIYSYLSENKILSESRFGFRPKLSTSTALAFFTDTILDNADNGLITASVFLDFSKAFDTVDHAILLCKLKSFGLDNNSLNWFESYLTNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LB50</accession>
    <name>A0A7D9LB50_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Kelch 40a</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003638</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017405">
        <property type="protein sequence ID" value="CAB4031170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LB50"/>
    <dbReference type="OrthoDB" id="6434269at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd18186">
        <property type="entry name" value="BTB_POZ_ZBTB_KLHL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22744:SF17">
        <property type="entry name" value="BTB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22744">
        <property type="entry name" value="HELIX LOOP HELIX PROTEIN 21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="282" mass="32703" checksum="84CD70F64C4F4C3F" modified="2020-12-02" version="1">MSTGSQNSDNVFSQRWNDSDVVLVVEGKEVHVHRYMLSMQSPVFKAMFNGNFKDSKQEKIELKDDKYETMLLFLQLLYPPNMLDENKSDVDINDENILQILEVADKYTAINIIKQCMKEAENLEPEITMRLLPYASRHDLPLDEILEVIGTEVSTKELENYAPELGDDRLYIQTLVKKCHSLEKLAKQAYTLVLFMLDRHFKNGFMDKSVRCSFHGVVNATGSFEKIRNCRRCLKAYQKFINKCVFSHDSERPLFIHFESSRLSCLDFVDFLKTVGNIETSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LBD4</accession>
    <name>A0A7D9LBD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017532">
        <property type="protein sequence ID" value="CAB4031318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LBD4"/>
    <dbReference type="OrthoDB" id="5986190at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="28023" checksum="FCF3C417801BE9C5" modified="2020-12-02" version="1">MSSLIDEEGVSIKSIRWLNRLGEILLEMRNLDKAYRCFQRALSMERLLYQTKPNMNTMTSLYFLGTTSFYLSMCRESKFYFESLVQLFESFGRPSARLMDVKKAFLYLALVSQILGNSAEESVCYFEKGIKATTGSRNDAELKLDCLLYCYLADTWHAQHNQEQAWKSALEGKACIRKIVRVQVRAQTTCHLANTLAKIQKTNEGIEILKEEVQELTSQSQMKEKALCLTKLGKLCFEQGLASDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFC2</accession>
    <name>A0A7D9LFC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Immunoglobulin superfamily member 10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078816</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018791">
        <property type="protein sequence ID" value="CAB4032896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFC2"/>
    <dbReference type="OrthoDB" id="5985842at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10604" checksum="953790F0316D05F2" modified="2020-12-02" version="1" fragment="single">MVTNIKARSARISWADPNNVGDGNRTGFWIRLKKENFVIQNITDYNENEYKIHNLTSYTTYKISVAARNKHGFGEETITSFTTSEEGEIDKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFD2</accession>
    <name>A0A7D9LFD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017948">
        <property type="protein sequence ID" value="CAB4031865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFD2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19080" checksum="3687D44A6286320F" modified="2020-12-02" version="1">MADNANNEAMLLFFIVAFSGVLSLNTSRDINMVEYPEPIKMTILGEKLELQWKYQVNKSGNNNWKISLYEYNYNSGTKTKILALLQSGITISNPNYLALGLRKLNMELSYDKAEISIPNTTFDDSTTGYGIIFQASDGNGAEGYFEKFTEINIVGTCKLTINECNLKRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNN1</accession>
    <name>A0A7D9LNN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082440</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021881">
        <property type="protein sequence ID" value="CAB4036301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNN1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="83"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4036301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="11830" checksum="4DC3A3379B2A9262" modified="2020-12-02" version="1" fragment="single">MWYDGDDVGCGDDDGDDVGCGDDDGGDVGCGDDDDCDVGFGDDGGNGDDDSGDGVVRGDDDGGDGVVGGDDDSGDGDMVLLEVMMIVVVVMLNMVMVVMMMMVIMLEVVIVMVQIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LSW2</accession>
    <name>A0A7D9LSW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026414</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023560">
        <property type="protein sequence ID" value="CAB4037879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LSW2"/>
    <dbReference type="OrthoDB" id="5984148at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="361"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="371"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="500" mass="56069" checksum="81A10AE97724F79D" modified="2020-12-02" version="1">MSKELEGVKKKRRFMRKSVTDSLKLIDEAFAEENSHARVQVLKDNILSKWNDLTEVQASLSIYLEDSEIDSECAGHNEYEMRVMDYMARMTKYLSVNTHAENSNGSNESGSSLGSTCKVQGVAAESVKGFSIVAENYESVLSTLKERFGHSRLILDAHMRGLIHLPRLSAEDATSMRVFYDKVVGHVRSVESMGEKYSSETLAPVLVPLIVDKLPKKLVEKWELEIGDKKEDCLPIKTLFTFLEQVIRAKESSTQAPNVESKPPKNISLKEGFHKNPSFRRSSTSALCSSTQTQEKECVVCGKDYNVWSCINFLSLTVKERFRKVSAKGLCFLCLEGGHRSNSCSRKTLCKHCRGRHHHLLHTDQLPPNRTHPDKTEVTERQSASQEDASRGCVKECSQTSFIKQSVIEELGLDGSSVQISVSGFGGKQDKACLRKRISCTLAPVDRPRCSREFEALTTAEICHPADAVEVNPANWVHLKDVNFPEEFPGSKRQLMFSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVE9</accession>
    <name>A0A7D9LVE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079850</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025043">
        <property type="protein sequence ID" value="CAB4039185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVE9"/>
    <dbReference type="OrthoDB" id="3169036at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022441">
        <property type="entry name" value="Para_beta_helix_rpt-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03804">
        <property type="entry name" value="para_beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="34084" checksum="8D39BD4FF9F924FA" modified="2020-12-02" version="1">MISSEVDIRENNIFDNDMWGIWSMSNSWCNVSMNRVFRNKAGGVRVGYRAAGKEFSPSIVELNKIYDNIGLGFLDNVRKCEVDGRPSANVDLRKSYLKSPNSLQSAKCLDNEVHNNKESENISQLNFAVPYCSNCRKKCEPKRCGKCFTAVYCNKTCLEGHWSKHKKLCKVLRGKASFLITSMKRVGGDGMIKRHAKSLEEIGPKFSPPPPRDGRRFVVKVQSSMPETDLKPHTLLLYDRSLELYEEIQSKVIAKLVQEFGIQCERQVAEKKLFLHCLFGKNGQPRLFINEFADFLKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M138</accession>
    <name>A0A7D9M138_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042799</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028859">
        <property type="protein sequence ID" value="CAB4041748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M138"/>
    <dbReference type="OrthoDB" id="9909787at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="24659" checksum="6B385907B510B92B" modified="2020-12-02" version="1" fragment="single">MSKETKGRNPVSETRSKRTQCDSNRGGLSCSKIVLMDISLQDKPDQIHRVYALVDEQSNSSMITPDLANKLGINSKKEKYFLSTCSVSKEVKYGRRVSGVIATSVDGKSSKLPTLIECNHIPQDKREIPTPELVSRFPHLQELAKEIPPFDSKAEISILIGRDAPELLKVREFRNGPRGAPWAQKLSICWTVCGQVCLDRLDGAVHVSTHRTTIFTKRALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M815</accession>
    <name>A0A7D9M815_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023122</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035153">
        <property type="protein sequence ID" value="CAB4044499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M815"/>
    <dbReference type="OrthoDB" id="10514615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="26665" checksum="06C7E85675A443A1" modified="2020-12-02" version="1">MSLRYKVVLVWVTCLSCKVIMTGCEVVLVNRNVTDSFRVGNDGCTNDATVCTSSATCQSDGSCLCSDSKPNFRNPVIIADGAIKYGDSYGCVSSEFMRSGVGVNVCSFKPFQVIPHSPKDEAIQFSYDLRNTIFQKCSLEKAVAKFPDNVAEMDLQWLNESYIDLTVSSKTLYFNWTRSATDLQGTIITFTLKCQLSSGGYSTECLRAKVLGIWTAGKGYLPNTPSFFRVFADSCFAIKNCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M8C3</accession>
    <name>A0A7D9M8C3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030771">
        <property type="protein sequence ID" value="CAB4042767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M8C3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="10557" checksum="FFADCED6026FE663" modified="2020-12-02" version="1" fragment="single">TVSFVVIVVPASAVVFAIVDTPVVVAAVVFVAVPASAAAGLPVIDCFVLVAAVVVRPASAVGFAVVDTPVAPTVVVPAVLLATVVVLLATVVAVVPLVFSSPLKDSAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MA27</accession>
    <name>A0A7D9MA27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060469</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032007">
        <property type="protein sequence ID" value="CAB4043298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MA27"/>
    <dbReference type="OrthoDB" id="8022849at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="23920" checksum="A217A45DCDC92927" modified="2020-12-02" version="1">MDVRTAFLQGDLTDEIYMKQPRSKENPDHVCKLKKSLYGLKHSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVENLGEVSHILGMLIKRDRYSRTLTIIQVLGRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKNISM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MHR1</accession>
    <name>A0A7D9MHR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043259</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020047799">
        <property type="protein sequence ID" value="CAB4046221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MHR1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16085" checksum="620546A59D249577" modified="2020-12-02" version="1" fragment="single">MPKQAPLSSPMLRVRLQAVIDRSEGYLTALSSDSNKPTLSSTAKATANRISKNSDLLTSSLNSYMESLPESETIPEDAIEISKKCSDLLVRSDIMADKFEALLIGVSPPPSPKLSQKSRLPKVELRQFDESQPVTWFHQLEIQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FIR2</accession>
    <name>A0A6S7FIR2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000205">
        <property type="protein sequence ID" value="CAB3979525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FIR2"/>
    <dbReference type="OrthoDB" id="5953333at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21007" checksum="5CA61D9089F8EE98" modified="2020-12-02" version="1">MQLKQTNGRFPNCKTVQSRKKELTSTTHGVILRGTRIVIPAALQQRAIDIAHETHLGIEKTKSLILENIWFPQTDNQVKKKIAKCTTCQAVGQANPPEPLRMTEMPQLPWRTVHIDFYGPLPSSEYLLVAADRYSRFPEVEIVHSTRASTVVPKLDKMFSVHGIPDTIISDNGPPFKKTKTSMYDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FW93</accession>
    <name>A0A6S7FW93_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">MICOS complex subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A000420</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Component of the mitochondrial contact site and cristae organizing system (MICOS) complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Mitochondrion inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Mitochondrion membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the apolipoprotein O/MICOS complex subunit Mic27 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000117">
        <property type="protein sequence ID" value="CAB3978481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FW93"/>
    <dbReference type="OrthoDB" id="10368853at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061617">
        <property type="term" value="C:MICOS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042407">
        <property type="term" value="P:cristae formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019166">
        <property type="entry name" value="MIC26/MIC27"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033182">
        <property type="entry name" value="MIC26/MIC27_animal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14564">
        <property type="entry name" value="MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09769">
        <property type="entry name" value="ApoO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 7" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="7" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="465"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="807"/>
            <end position="847"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="815"/>
            <end position="829"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3978481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="847" mass="92307" checksum="A5C385EFE2CE4B99" modified="2020-12-02" version="1">MQLEIYDKPEDQSKSSKPDDYPPTSLEEQISKGRQFVWKHSDKVKNVTDSSAEGAKTFWGKTKEFATNIQTDQTLQLKTGAIAAATLTGILVAGRGRRPLRRVFFAGTLGTATAAVCYPGKAASTAKSAYHKLASYVSDGKPSSKAQKVQFDENIDQFRSGETLMLEEAIILSEMLYEELLKWLHVEEIHLADVMAICNEVVQEVFLGISEDFEIQTGGYVSAEHAPHASSDVVLDAKDVTQRLVQEVLDSINEDIEIQTGGVVTGVPTIALDSTVLAKDISTAVTKALERDVASGSTDQYLFSSPAGLSRVVCEEYTKCVDAAIRSQVPTGKCHVIINSTNLAAKTAAEIKVVVDGLKNSRSVLVSSSRPGNTSDSAQVTEQVASKLLSHIEQGIRKSDGKDYAFSEASKIVRKASEEATKAIASDVQGSGQAVKDRKTRVALDLAKKVGEEVIEAINEDIEIQTGSGLRGPSDGKPKPPRKPPTPVTKDDAATLDGIMYSPMYVPGFDHIADAIIEEVSESLHGRGVVVHELDHMAHVTMKEILAGVSEDIEIQTGGWAGREHKPHAVLDGKSLVRRIADEVLQAIEEDMNIQTGGKLERKRDLYFDSERLAKNIVDSVMGEVNRDIKETGASTPYLFSDTKELGQLALKELQNNIDQAAIGIGRNVGRVHVDVDALSEEVGMQLKDRIEERYIRSNSIGELRDREVAIVDFGEIRKSVGAIMKRNLTENALVSPRPGNEPVHVVKEWGELTKGVVETMTKAIQEDIEIQTGGAKLGKSPRVVIDARGLMTSVIEEITEAVQEDFDIQTGRGFRSDESKARDEKPRGEPGQSEPEDKDMYSTRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWX5</accession>
    <name>A0A6S7FWX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083846</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000299">
        <property type="protein sequence ID" value="CAB3980532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWX5"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="434" mass="50864" checksum="C5DD655B4B75E547" modified="2020-12-02" version="1">MWKHANVLPVPKESILNSLNQLRPISLTDIIMRLFERSVFKTEIAHVTRHAIDSDQFAYKEGHNSIMALIKCQHTWLRWLEGDAKYVRVLSFDFRKAFDSVPHDILCEKLKKLPINPYVTNWLISFLEDRKQRVVVDGIETEYLNINRGVPQGTVLGPVLFSIMVNDIKTVNPINQLVKFADDMTLEVPGNENGDTSQAEVDSIQTWSENNRMSLNMEKTYEMIVRRNIPTLLPDPFPFIKRRTWLKILGITLQDLPSKWDLHFDEMLKKASARMYIMRVCKYYGFPIKQLDMLFNTLIMPIITYGIELWGGAYFNKYISQIDKFINRAHRNGYISEKLNIKEISIKRDKKLWDKVIHNKDNALQELLPDKLNRHLRPRGHEFELPLMCDEWLKNMDEGKITGLVSLDIKKAFDSINHQILMSKMKDQFGIREN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FY40</accession>
    <name>A0A6S7FY40_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 9">Peptidyl-prolyl cis-trans isomerase E</fullName>
            <shortName evidence="9">PPIase E</shortName>
            <ecNumber evidence="4 9">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A057849</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins.</text>
    </comment>
    <comment type="function">
        <text evidence="2">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="4 9"/>
    <dbReference type="EMBL" id="CACRXK020000750">
        <property type="protein sequence ID" value="CAB3984528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FY40"/>
    <dbReference type="OrthoDB" id="193499at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016018">
        <property type="term" value="F:cyclosporin A binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01926">
        <property type="entry name" value="cyclophilin_ABH_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12347">
        <property type="entry name" value="RRM_PPIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.100.10:FF:000013">
        <property type="entry name" value="Peptidyl-prolyl cis-trans isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000776">
        <property type="entry name" value="Peptidyl-prolyl cis-trans isomerase E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="entry name" value="Cyclophilin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020892">
        <property type="entry name" value="Cyclophilin-type_PPIase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016304">
        <property type="entry name" value="PPIE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034168">
        <property type="entry name" value="PPIE_RRM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11071">
        <property type="entry name" value="PEPTIDYL-PROLYL CIS-TRANS ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11071:SF561">
        <property type="entry name" value="PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001475">
        <property type="entry name" value="PPI_cyclophilin_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="Cyclophilin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00170">
        <property type="entry name" value="CSA_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 9" id="KW-0697">Rotamase</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="117"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR001475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3984528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33017" checksum="EC29D1AA7D5E7CE2" modified="2020-12-02" version="1">MATKRMVYVGGLAEEVDEKTLHAALIPFGDITDVQIPLDYTTQKHRGFGFVEFELPEDAAAAIDNMHESELFGRTIRVNLAKPMRVKEGSSRAIWKDDAWMSKHVGETLELDKNNKNADSTTAESGESANNSETKRNYRVFFDIMIADRSAGRITMELRNDVVPKTVENFRCLCTEEKGFGYKGSPFHRVIPQFMCQGGDFTKGNGTGGKSIYGKKFEDENFVLKHTGPGMLSMANSGPNTNGSQFFITTEKTDWLDNKHVVFGSVIDGMDVVRKMEATGSASGKTSKKIVIENCGQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCV7</accession>
    <name>A0A6S7GCV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A068905</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000587">
        <property type="protein sequence ID" value="CAB3983190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCV7"/>
    <dbReference type="OrthoDB" id="9049620at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3983190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="508" mass="57176" checksum="6C8AFDB3AB577EE5" modified="2020-12-02" version="1">MAEGFDTTRFQSAVDDGFTCPICLGVLQDPMQCQNNEHYFCSGCIKKHLEKTSLSCPVCQDKLTVETLRKAPRIVADYVSRLKISCNHAARGCEAVLELGALKIHVQDCDFMPVSCSNQGCDEVVSKRDVKHHERELCQFKTTTCDDCGEKMSHHKYGGHGCVLRRDVDKMKKDLAEVKTTQNEMMNEVREGMQRMTIAMEHLKESFQNVVNSKNSDIVVIAGWHPETNKPLSSVERFNLFNQTWTPLADLKIARGCHAAVLFENQILVCGGSSSTNSDDFTDSIEVLDMNGNPPTWQEFSVNLPIKVAGHKCVVYGNRLLIIGGQPKENEILNTIYQLLLVPPYSSKLLCHMKKKRAFHGVELFDDKVLIAGGDEAETNVEIFDITRNECSQMQPLPSPLFGMATVRRGDSMFLIGGTDKEQNVSNEIIECDIRTGQSKVRLNMKKERVFCSAVYHENTLVVLDGAKDEVKSVDCFNFVSNYWRKLPSMTKERIFASALVVKKNFEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDL2</accession>
    <name>A0A6S7GDL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051246</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000609">
        <property type="protein sequence ID" value="CAB3983420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDL2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11989" checksum="74615FF0BE38707F" modified="2020-12-02" version="1">MQKALLHQQSSRMSYHGGLNELRAQTHTTYTSYPRSSNCEFLDCLDMVDDVLLTKMIEKLELQSLYTLPDLTQLFRRTRAAQQTANVQRRTIQSHGQNAGEVKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFD3</accession>
    <name>A0A6S7GFD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052959</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001273">
        <property type="protein sequence ID" value="CAB3988059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFD3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11494" checksum="C21BBCD29665444A" modified="2020-12-02" version="1">MFMVAEDRIGRFFKVPQMLDFNAANRSVCVDLSHKRKTINCKKPTGFKAITTVSDSPFDDLIIDNVQSNFLSCSGGFDRLRGGKASDTYVVKRTFPDYCSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GH31</accession>
    <name>A0A6S7GH31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Adenosine receptor A2b</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A018501</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001295">
        <property type="protein sequence ID" value="CAB3988236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GH31"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3988236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="23069" checksum="3BA7CFEB0A883CD1" modified="2020-12-02" version="1">MVQANPENSTVQVKCPDFVHEHWIEWILTLNKLDKTNRTLLIAFNAILIFLTIFLNLLSMITIRKSSQLKNKMCYFVILVQSVVDFGVGILGIPSFILYLSTSSLPLRIQNCLVVVVLLQSYTMVLLLSNATLAAMTVERYIVAATPVYEDMESAQDVAHYHWTITLFNFNSSLNSMIFFWNKTMLRKEASVVLKSILSRLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKE4</accession>
    <name>A0A6S7GKE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Meiotic recombination DMC1 LIM15 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A006853</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002358">
        <property type="protein sequence ID" value="CAB3993934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKE4"/>
    <dbReference type="OrthoDB" id="10251254at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000794">
        <property type="term" value="C:condensed nuclear chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008094">
        <property type="term" value="F:ATP-dependent activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070192">
        <property type="term" value="P:chromosome organization involved in meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000730">
        <property type="term" value="P:DNA recombinase assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042148">
        <property type="term" value="P:DNA strand invasion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006312">
        <property type="term" value="P:mitotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007131">
        <property type="term" value="P:reciprocal meiotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.150.20:FF:000032">
        <property type="entry name" value="meiotic recombination protein DMC1/LIM15 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010995">
        <property type="entry name" value="DNA_repair_Rad51/TF_NusA_a-hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22942:SF30">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN DMC1_LIM15 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22942">
        <property type="entry name" value="RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14520">
        <property type="entry name" value="HHH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47794">
        <property type="entry name" value="Rad51 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3993934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14928" checksum="4D63A46CEC22ACED" modified="2020-12-02" version="1">MNGYRDVSSKTTQASRRDEQVVDPEISDQEEEEESFYLDSDLLQNHGINVADIKKLKTSGIYTIKGVQMTTRRKLCQIKGISEAKMEKIKVCIFMILQTICTLLEAAENTLACLLLRCFVPRELGSVISHQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKN1</accession>
    <name>A0A6S7GKN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pantothenate kinase 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A030515</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002373">
        <property type="protein sequence ID" value="CAB3994014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKN1"/>
    <dbReference type="OrthoDB" id="6018540at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10880">
        <property type="entry name" value="Uncharacterised protein PF01937, DUF89, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036075">
        <property type="entry name" value="ARMT-1-like_metal-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002791">
        <property type="entry name" value="ARMT1-like_metal-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01937">
        <property type="entry name" value="ARMT1-like_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111321">
        <property type="entry name" value="AF1104-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0533">Nickel</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Damage-control phosphatase ARMT1-like metal-binding" evidence="3">
        <location>
            <begin position="2"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3994014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15657" checksum="4D12BE19E84DBFF7" modified="2020-12-02" version="1">MLVRFLQQQVILAANSRPALNDVTYSELQIITEKVAAICPVIKQAVEEKRLVIMESGTFSPCLDLRRVDADLVKKCADADLVILEGMGRTIHTNYDALFICESLKMAVIKNKWLAKRLNGEMYSVVFRYKPGVNSPARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMW1</accession>
    <name>A0A6S7GMW1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050222</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001800">
        <property type="protein sequence ID" value="CAB3991169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMW1"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15384" checksum="98F12B891EE60494" modified="2020-12-02" version="1">MLQGKKTITDSEEYIFPNIEKVKVTIEGKPNAVYSQGLTTENFYDEPKRLFGIANNTCNDNISVRKFYKNKFALVVDLRAVDDNHIVGSEKKLLGDNPGILLEIETDGMSEDIFCNIFVLSDGLINISEKTLQGISY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMZ1</accession>
    <name>A0A6S7GMZ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002254">
        <property type="protein sequence ID" value="CAB3993398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMZ1"/>
    <dbReference type="OrthoDB" id="6016512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="20095" checksum="E9AD5D624CA5392E" modified="2020-12-02" version="1">MEEDSNSKYEKLTLGDDGSVVRSEFVVEGHKQPLTVVWEHFLKSHACYMRNVSDKEFSNMSKQELTKRLSQKAELQKELNSRKVYKGETVDDMKKLLTDKLHGVQRVPALLYPNPLATLALINSDKYEILPFEPLHDVGKHIKNILIELPMHVSQEEATIINETIEFSLGNEETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQ99</accession>
    <name>A0A6S7GQ99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A065530</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001986">
        <property type="protein sequence ID" value="CAB3992129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQ99"/>
    <dbReference type="OrthoDB" id="5967122at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031037">
        <property type="term" value="P:myosin II filament disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903013">
        <property type="term" value="P:response to differentiation-inducing factor 1"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04515">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992:SF2">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3992129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="432" mass="48016" checksum="BCC34730ED5D88F9" modified="2020-12-02" version="1">MTDRAAWKNFKKQMTAKRGNKKNTSGVKILEEESMTVQRLSADVSGKAQKYTRIGAREFVLFEYEEVTVENIKLACLNHFDISETAVCDVVAGEQGPSCSSVKQIPNLSVIHVWFIDGEDVANKPAIKENPVPTIKKRKIAVESVQLVHASATATTSTPSAAVRTKFIPRSMSAVEMLRVGKEIKSTHDTTEIRIYEFDLGNMSWAPTPNKVDFVIGKDPIGTGGFRQAFKATSQTKGFDKGPWVVKKNLNKTVDDIQYLGQTVEQHTKKAVQMHNLARNFTARLQQEVVKKDKADEFGEVLQYNKVFFGKCGDECVTVEDFIPGTFDKHVNNTGHVCGNTETDLCQKAECFAHYSYERSDKQLMVLDIQGCDYMLCDPEVATKETSSGGEFLFCTGNLSSTAIAKFNQFTCVQQILQNTGLANAKRVTLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GT59</accession>
    <name>A0A6S7GT59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011642</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002210">
        <property type="protein sequence ID" value="CAB3993212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GT59"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="60" mass="7131" checksum="28B529E19F2C425C" modified="2020-12-02" version="1">MERVKQMAKKAFISKLNLDFLKSYILNKDEKSWNRCFNGSVSWGTLYRPSFTLPTWDLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTM8</accession>
    <name>A0A6S7GTM8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032356</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002583">
        <property type="protein sequence ID" value="CAB3995015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTM8"/>
    <dbReference type="OrthoDB" id="6086925at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051077">
        <property type="entry name" value="Ca-dependent_lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24024">
        <property type="entry name" value="PULMONARY SURFACTANT-ASSOCIATED PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24024:SF18">
        <property type="entry name" value="SHORT-CHAIN COLLAGEN C4-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="27559" checksum="4E9A3896C8AB2A3D" modified="2020-12-02" version="1">MAFNLAIFLAVLVAHCAGSQSDELENNIFNRALRHKEITDLDQNDFDEHDAASAKRLVYGYCGKVGVSYIRWGKNTCPGNWGTTLVYNGSVGGSWYNNKGGASNYLCLPGVPIYNKYKTGVQTDRSGIYGAEYQTGSDGIFPSNLHQHDVPCAVCHVTNRASQIMIPARNVCPAGWRREYHGYLMAAKYSHYRTMYTCVDENPDYRPGSHANVNGALFYFVEGKCGSLSCQRDAYVKNRELTCAVCTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GU67</accession>
    <name>A0A6S7GU67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070204</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002288">
        <property type="protein sequence ID" value="CAB3993582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GU67"/>
    <dbReference type="OrthoDB" id="2717295at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="382" mass="43728" checksum="A0FBD088FB5DBA85" modified="2020-12-02" version="1">MTLIVKFAILEKHLTGPAKDCIRGFPFTENSYPLALKALQDRFGDEEDQASFYLGAVENLPKIKISDVPGLRKFHDDLNTTIQVLENMGPDVAMHLNDPRRMKLLSTKLPRNLAVAWATYQDDKGIGSDMRAFAEWLRKKVQILERVEVQPQTEAGDKRVPGKQVFKPHVHVTTRDEVTQTERTETKLPIEREKCWRQIKDKKCSYYRGKLHSNSRNLKQTWKTLNELMNRKSTNNKIPEMKDENGEVIDETLIPNAFNKYFVELGGKLANKIPRSNILPDSFLRDVHHPVNGLPSFQEISENDVLTLLHGLGPNKASGIDGISSRILNFGSSYFTIPNINMQPVNLKLTGIFPNDWKILRITPIFKSEAKDEMTDQYPLYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GW44</accession>
    <name>A0A6S7GW44_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">THAP domain-containing 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A017371</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002441">
        <property type="protein sequence ID" value="CAB3994342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GW44"/>
    <dbReference type="OrthoDB" id="5957773at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.210.20">
        <property type="entry name" value="THAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038441">
        <property type="entry name" value="THAP_Znf_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027805">
        <property type="entry name" value="Transposase_HTH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF133">
        <property type="entry name" value="SI:CH211-262I1.5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13613">
        <property type="entry name" value="HTH_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00692">
        <property type="entry name" value="DM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3994342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="533" mass="60757" checksum="98A45CD9CBC5297C" modified="2020-12-02" version="1">MPSHCCVPLCSQQGYRLSNGEKVSYFNFPKDKTARKQWIHAIRRDEGNYFKVHDKTKVCSLHFKPDDLKKSLNGRIFVKEGNIPSKFEWKLESPKRRKAPAVRQPLVKNTTCNNVPSTSSHADFTASKVNDNEELLKEELTDLKRVQEVLERTIKHTEDSLRDAKETISNLQQENCNLKKSICLIQEESVQNSGHMKKQIEILKKQSEIIEPLLNLNSLTSDQDIAFYTGFPNYDIFIALFNYLNPGTHGENIRYVREKPNDFYVAIDDSEPEKENGERKKGRPKKLKPIEEYFMVLCRLRRGFSIQHLSHLFGVASSSVSRSLTAWINFMYLKFGQINLWPSKQLVQDTMPDVFKEKYPNTRVIIDCTEIRCEMPGSLLLNGELFSSYKNHTTLKGLIGIAPSGAITFISQLYTGSISDREIVIRSGFLDQAFVDGDTVMADKGFTIQDLLPLGTTLNIPPFLGQNSQMGAEDVIRTQQIASVRIHVERAINRIKNYTIWSGVVPLSSFGLVNQMWSICAFLCNAQDKLISI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GY98</accession>
    <name>A0A6S7GY98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028343</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002993">
        <property type="protein sequence ID" value="CAB3996988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GY98"/>
    <dbReference type="OrthoDB" id="5861729at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="274"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="274"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="293" mass="32456" checksum="B01BBA867E062131" modified="2020-12-02" version="1">MAENLQELQASRAGYQAHLTQTIKKATNIATKEDPLTDSDITSLKRIVDQLARKRSILEELDEKIVGMIEDPKELEKEIFQTEDIKEEIDETAAQISNTIEHFLSTKLSPTIATVSTGQLHCDANILLDEGAQWSFITTDLANQLGVMSSQTEEIALSAYGAQTSARRHLPLATVYIITRTGQQIPLQVLVVEEIATPLQIPPRQHINDMPHLKNLTLAHPITAQEDFRISLLIGANHYWDIVEDEVTRGQGPTAVASKLGYLLSGPLPTPSRPSNTFVNLLQSDPPKEQNLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2W1</accession>
    <name>A0A6S7H2W1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067229</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003028">
        <property type="protein sequence ID" value="CAB3997122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2W1"/>
    <dbReference type="OrthoDB" id="6001607at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="629"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="633"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="653"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="653" mass="73725" checksum="84B4ACBDD7B8C8E9" modified="2020-12-02" version="1" fragment="single">IETTKDFAQERSEEGSYQRNVISQTGKVEHSTLITKPHERSVIHTPGGTKRKVNPTHYAFKIKISEIIKEKVVHVEGKELASDTIISILEKELPECKGLSKTTLLKIISSVLGCTLRHMGKQRCSYYKGVTLRGDTVKEIQGEDGNSSVIIGMPGPSVSPSSRSPKSKVAKGDDLLPHPRSPVKCRTKLLLSDTSVEEPNEGMMLMMDQLHLSNPELKGQFAKIQHDLCLAQQKIQNLDVTCKNFAQEKTALAEQFSQLGDKIELYEKTASAIISTQDEIIYSYKEIIGSGNLLGGLLTISEKDAITGEVKTLRTILNLGLRTKGVVDIAEKFDPMLFSNIAHKVHHQCPTITNILEQLVLTRNTSRNTLKTADMKMKDSIHLLASLMDERDQHAGNDIPILFGLVCLCYGSGPSMIQIMQHLGLSESSEVLTNVLTKQLNNYKEIINLRVADDQTVITYQDNLQMKRTSMRHLRLSKLQKEKMKQNKMWDFTVRGWRVADSDGIEDVFKDKNTAVTPQRKLSSLKYDDTKIDVPPALTEFPEYANNATKIYPLPISQENQVKIVGVAGNLDLFNREFNFKSGRDKKYLPLHTNGKEFDLDRAYERYAFMKSLERHKEAQRRYEQILRHEPVDNEEMLEDCGESDSDNSEDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H315</accession>
    <name>A0A6S7H315_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017669</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003014">
        <property type="protein sequence ID" value="CAB3997066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H315"/>
    <dbReference type="OrthoDB" id="10546217at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11301" checksum="5681C0D14F146498" modified="2020-12-02" version="1">MFELKFKKDNVWYAVHASHSDVTASQVTGDTSFEVMALRSPNQPFVVLRSNKKLGNDDLYLSSEGAGKMKLKVPNQPIRRSAPEVDPALLFRVVRPFIGPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6D6</accession>
    <name>A0A6S7H6D6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077094</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003338">
        <property type="protein sequence ID" value="CAB3998386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6D6"/>
    <dbReference type="OrthoDB" id="5959223at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888:SF1">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888">
        <property type="entry name" value="ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="21244" checksum="2F8DCAFD2CB389F8" modified="2020-12-02" version="1">MEKLIALGKEFGFEGKELLAFVKEQQDEEKRRVDEEREERQRERESKKLEAEERERIRLRELDEKEKEREMGEREKEAQRRHELAMKELELQSANVEVNSASIKSAAKLPKLPTFVDGKDDLDSYLQRFERFAKNNNWDQSTWSTSLSALLTGRALDVYSRLSETAAVDYKQLKEAFEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8C3</accession>
    <name>A0A6S7H8C3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004246">
        <property type="protein sequence ID" value="CAB4002055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8C3"/>
    <dbReference type="OrthoDB" id="7689536at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF13">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="134"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="33910" checksum="148D6D9BA4E8FFD0" modified="2020-12-02" version="1">MWLEERQIHHGMEEELETIRYYFRRSYDYNAILEFLDKYHYIRMLKQTLLNRLRDYGVNRRNRNIDEDLVRDHINRELRAMWRNLHLKYDINVPRSAVEELMREIDPEGVRSRKAHRLKRRKRNGTNSLAGLKAHRFGSSHSNQRIEAWWAFLRTWSTCWMNFFKDRIHEGNLDARNKLHLECIWFCFKNLIQNELNGVMEEWNIHYIRKSRFQTASGITNNLFFLPESVGATDHIHPYNWEDVEEINNELHIPENDDSLIYQEYFSYVSYIIRLAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HDX7</accession>
    <name>A0A6S7HDX7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042354</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004362">
        <property type="protein sequence ID" value="CAB4002459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HDX7"/>
    <dbReference type="OrthoDB" id="5985905at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="145"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="395" mass="45779" checksum="3FCA6AA366D93BE7" modified="2020-12-02" version="1">MFCPGELNIADLPSRGCTGAALIKNDEWFHGPKFLKLSEENWPKPPRCNGAESEIALSEMVRRTLELSADELIEAEQMWIKDIQNNMFPEEVKQLINRTKTSSSRLHQLRLFLDDKVMIRCEGRIEHSPVSSEAKKAVFIPAKHHVTDLIIQEHHDSANDTGIKGTLNRIRERYWILHGRQAIKRVLRKYVTCKPYPTPKTPHLPSWRTSNDTPFSYTGVDFAGPLNVKENSKCGQQSTKKSYIALFTRAKELSKIKRSPEVQQQHLANNGVSWKFIVEKAPWRGVFWKRLIKSVKRCLKKSIDRATLSLEELRTILIEIESTLNSHPITYIYDDEEGISYPLTPSCLLYGRRTTTTPNDSQFEIVSTNESLTRRAQHQKILLKEFTKQWRREYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HF57</accession>
    <name>A0A6S7HF57_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077012</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002437">
        <property type="protein sequence ID" value="CAB3994321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HF57"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14422" checksum="2BF6DAB37673FB4E" modified="2020-12-02" version="1" fragment="single">QKYRMIELYHANRIELSFRISAFAGHRTSKSTSSKHKNFPPLTLNTPATEHRSKDRFMILEKPALSKNNLNDIVKSTPTSEMLLSTCHPSPCMGLNIVNWSGEVPFLDSLRLHKSHSMVALAAGTWTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFH4</accession>
    <name>A0A6S7HFH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002403">
        <property type="protein sequence ID" value="CAB3994157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFH4"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="38326" checksum="A27E054497075FBA" modified="2020-12-02" version="1">MATGKSPGLDGLPAEFYQRFWSLLVTDFVDVINFAYNHGQLFPSQRSGVITLIHKHGDRLDMKNWRPITLLCADYKIVAKAVANRLLSVIAKVTHSDQTCGVLGRNSLERVRLLKDVVFHANQNRKAAAIISLDQEKTFDRVEWEYLSPVLKTMNFGQSFRCSLRLFLIPLLYVLVAGTITSAILPSGRTVKLCQYADDTSVIVITDLALNALFHLFTRYEKASGAKLNVKKCHALLIGTWQSRSNLPIALNWSNVEIIVLGSRISNNNEEQWVSKIKALKTTLSAWNQRALSFRGRALIANMLGLSTLWYLCSVSVLPEAIIQAVNGEFFPFVWRKKRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJS0</accession>
    <name>A0A6S7HJS0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger 862-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A074328</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002683">
        <property type="protein sequence ID" value="CAB3995541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJS0"/>
    <dbReference type="OrthoDB" id="6157421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF9">
        <property type="entry name" value="ZINC FINGER PROTEIN 862"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="2">
        <location>
            <begin position="40"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="177"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3995541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21467" checksum="97E99327C36E00BA" modified="2020-12-02" version="1">MAAHFAKPLEHASFNLASALKEWRSFKIYVRSHYPKLPDPKCLWKSVLSIRREEFPNLCKLASLAICISGSNSTVERTFSVLTNILSDKRLSMRHSTLDDSLIVYGNDSLWSVKEKEEIIDRAVQIYLKTNNRRKKVGQPAKRQKLDEEIASDKPQELADPLVVDDDSDTDSNASFSDEEFSLSESDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HP72</accession>
    <name>A0A6S7HP72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087367</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005339">
        <property type="protein sequence ID" value="CAB4005877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HP72"/>
    <dbReference type="OrthoDB" id="5969387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11721" checksum="4A6626E612D1FDBB" modified="2020-12-02" version="1" fragment="single">RERKSILRGICTAEPSQLDDDIAEAVSLFGSQEEKEEKGAKDEDRSQVVDVRQVALETARGTVKRKASGNDLLRAKKTAMVEILRNKTNHVIEYRKKEMEHKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPX4</accession>
    <name>A0A6S7HPX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081121</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003144">
        <property type="protein sequence ID" value="CAB3997620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HPX4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="235"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="274"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="39070" checksum="B1C9BF27EE71F02E" modified="2020-12-02" version="1" fragment="single">MAARRKISRRRNRRCRKSFSGVDIGLVDVTYCAESTFCDVISWMNSLIIMLLLKLLARHPCEQGANDTNTPTNSANEVSPSVFWKDLDVMFKYARPFENAGIFEVSILMRILVNLNSPDECGKHCLSYETTLYFGPHVLTATKTSNASPQIIQNKYGRLMAKKPEDRANIERVYDDVRHIKSVLAERFGKRFGKGKKSDLEIVREDLGKVKKSGKELANDIKNLKLILYGMGGQPVSPVKRSVESRNSSTELSKDRKGQVNASLNREGSKNDDNNNNNNNNNNNNNNNNDDISHSLGIRKCTECPLRRISGASVYAKMWSFIVTHDITRIRGDSCKMWVTQEQAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQC2</accession>
    <name>A0A6S7HQC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Solute carrier family 22 member 15-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A071334</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006069">
        <property type="protein sequence ID" value="CAB4008255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQC2"/>
    <dbReference type="OrthoDB" id="5296287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24064">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 22 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4008255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="53309" checksum="55E05DB5CD372C55" modified="2020-12-02" version="1">MSQLNNILSRIGEFGPFQIRVYLLLNSLAIFRCFQMYLLVFVGDKPQWNCLVDDHPLDTKEKFPCLQNGSSCENVQFSGEFTSIASEWRLICDEEYKRSLASAIVMVGCLVGAVLFGGMADKRGRKSTIILLYSITSISCVASGLAQTYRQFVLFRFITAVMLNGSSTAVFVLISETVGQSSKDMLLTAYQGFYSIGYVILSLIAYFIRDWRYLTMTVSFPIVFCSTFLLRNGLCESPQWLVENGRIEESKQLLREIAKTNGADISETLLEKLSNDVPKANLRTNQNNTSVFARPGYVKKALILSVIWLFLSMMYSGLSFLSGSLSTNKYLSFGLCGLVEIPALLLSMWIIKSGRRIPLLTLALFGSLACLVCGWLQGGDQSQGGFFIMALALLGKFAVAACYNIIYIFSAEQFGASVRSFSMGIFSTAASIGGVLAPLVIGLEVYDKRIPMLSFGIGAILAAIFVMTLPETVKVRKPHKKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HRA3</accession>
    <name>A0A6S7HRA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Laccase ARB_05828-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A080876</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005596">
        <property type="protein sequence ID" value="CAB4006767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HRA3"/>
    <dbReference type="OrthoDB" id="2121828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF394">
        <property type="entry name" value="FI03373P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0186">Copper</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="4">
        <location>
            <begin position="93"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="5">
        <location>
            <begin position="335"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4006767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="491" mass="55571" checksum="F757174150ECB4FC" modified="2020-12-02" version="1">MRYQRDSGLYGALIVREAETPFPIFSETFEDQPERKTMAILDTMINPQTSFMGRTSVLPRYCLPDGSGIPVQFDYIQFQMNGQRLPRRASFAGLNSQIEFYVVGGKNYRFRIIAATEENIFVISIDQHKMHVMATDGYLVKPFETDYLVVHVSERYDFILKAKEGVSPGSKFPIRIQSLAVLCNDNTKLAGESYGFLVYTNGFVPMRPALRERLIVQNGRCNDKSNPCKVLNCPFGKMPNDYSNPGTYMTCFNVLALQLLIPTPQGEYPSSVVDRKNEFFFNFHQTAEGLINGIKFDFPEEPILISKKIINECAYPVRCNKIGRRHCRHTVYLENYGSSTRFVLSSLRLPVPITHPIHMHGHSYFIAKIGYPEYDESGRITAPNKDLKLPSCGHATWSDGTPGGIVVNSTTVRKDAIIVPAGGYVAIHLLQKNPRWWFMHCHIDYHLNHGMAIAIGENPTMASTPPDPLYNVTEEFCFTLQTFLLKESSNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZN7</accession>
    <name>A0A6S7HZN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036589</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006667">
        <property type="protein sequence ID" value="CAB4010069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZN7"/>
    <dbReference type="OrthoDB" id="5976606at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="38209" checksum="24CED232009568BC" modified="2020-12-02" version="1" fragment="single">MAEKYLSQIYYDPESPASFGGVDSIYRAVKNAGKYEISRNKIRQWLQKQDTYSLHKPVRYRFRRNRVIVGAMDDEWEADLVIMDSLSQQNNGYKYVLTVIDVLSKYAWVEAIKAKTGNNLVKAFEKIIKKGRKPKMFHTDKGTEFINRQFQTFLKKHGIRFFTTYNETKASIVERFNRTLKTKMWKYFTANNTLKYVDILQKLVKSYNRSRHRSIGMRPVDVNKSNENIVWQTLYGKESKKSIQFKFSIGDQVRISKAKRTFKKGYLPNWTEEVFTVTKRVPRRPPVYKIADYDGEELEGTFYEQELQKVNKVDSDYYRVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I0D5</accession>
    <name>A0A6S7I0D5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072537</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007238">
        <property type="protein sequence ID" value="CAB4011694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I0D5"/>
    <dbReference type="OrthoDB" id="5977502at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="27448" checksum="21E1FA135840D110" modified="2020-12-02" version="1">MSETHFYLTLPSNASLDVFPDNKTGSYLVKLPHPIDLNGNWEVGLYSISYPNTWYTLRAEDNHIYCSTDGHIFSPVMVDCGYYETVQDLIAAVNRTLEKKTGNRGIALAFDPRTTKMKVTISQRGYMLGLATKMSAMLGFGGIDMKIKKTTTSPYVADLLDITTVYIYCDIVRPQIVGDVSVHMLRTIHDIVAKTFNNIQYVPVQTKSFEDIQILLRDGTGAPVPFERGTVIATLYFRKQSYFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I495</accession>
    <name>A0A6S7I495_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021802</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007290">
        <property type="protein sequence ID" value="CAB4011857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I495"/>
    <dbReference type="OrthoDB" id="5989585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="242"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="287"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="242"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="420" mass="46856" checksum="F8A6C9FD4C2E8445" modified="2020-12-02" version="1">MGLRGFPSSPPFRTTGDGNCLYNACSIALCGNETLAPYLRCLTSIELFVNSLFYVKHPILEQQHNKGAFSCIANAFAMCLSDIALDSLAKDDLSKSVVTESYNNALNRQWSSFLCLLALSSAISLPIEAYFPIPTTNESTSEEKKDSLSTMFNCTIQPRVITKLNSDERIHIFRCALMPIDYSVVSKIPARKNHYVALCKPKDNISDPTCIQKFFMKPVLSGIDASSTEIRTTPSYAGKISQALSAPQPSSGHQPSSAPQPLSSGTQKVKKKQAVLDNLFPKKRKFGEQSGDEEAQIHNQQPKKRPSSSLVQKESFSKPDPSSFPTDIANYANASSLTDERKYHVLCNVWRPSATYTFPLDNDKRKFRFEWLNLFPWLAYSQKVDGAFCINCVLFGSECKGKIFHYEDTEMILQTQLQGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4P6</accession>
    <name>A0A6S7I4P6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080519</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007598">
        <property type="protein sequence ID" value="CAB4012686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4P6"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="27375" checksum="F5BC19ED9EE0E568" modified="2020-12-02" version="1" fragment="single">MSNLFNEYFTDIGPTLSSQIPETNVSFETYMNFSAQKEFNFSDIHIQEVLNEISKLNTSKSVGPDNIPAKLVKDSKDVVTPFLTLIFNASVSNGIFPDDFKIARVSPIHKSGNKEERGNYRPISILSIIAKLFEKLACSQLNIFLTKNNILSPCQSGFRKGHSITTALLENTDSWLLNMDAGLINGVLFLDLCKAFDTVDQKILIKKLFTYGIRNKSLDWFKSYCTIENNSAWSIMQHRAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIQ8</accession>
    <name>A0A6S7IIQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A077399</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDR2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009088">
        <property type="protein sequence ID" value="CAB4016360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIQ8"/>
    <dbReference type="OrthoDB" id="10059415at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026079">
        <property type="entry name" value="CDR2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19232">
        <property type="entry name" value="CENTROCORTIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19232:SF7">
        <property type="entry name" value="CENTROCORTIN, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="43479" checksum="C9FE55154DE1E6FB" modified="2020-12-02" version="1">MARTASLNSTLFDIMDSAEGENYYTDLELAAAIGKNLLERNKELELFLCSTQEYADEQVQKSQYLTRQLEDAKEVNESRVKLMEQIEKNHEQLSRSHTKLKHETKSIREHNEVLTESLQSLVEKCDQYKTEMESLKRANRQLQKQLSSTQIPVETAVEDVENEFQTSEKVENNIQDLSVVIKELKFEQDLEKSMREELENELSQLIIENQNLEQKLRLFAKGNRNSYAEEQKDETKSGKEDEEVYNEKMADVEIEVDEDCSTESYVIVEEQEILELDSEPSSEQCDISFLDELDQQYRDLVGKYNALVEKCKSEGVPYESREMCTVQRGVQTSQEESVGSEEEPGCGQDVGNGTVPQYKKMFAMLYQKIRDGRNES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJ44</accession>
    <name>A0A6S7IJ44_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005392">
        <property type="protein sequence ID" value="CAB4006031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJ44"/>
    <dbReference type="OrthoDB" id="20839at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="27127" checksum="B06AC00514E2AAFA" modified="2020-12-02" version="1" fragment="single">MSFQFIPVTEHHIEKKFNQLKRSKAAGIDNIPPGILKDCSTVVKDPLAHIINMSLCTGVIPSEWKVAKVIPVHKKGPINDFDNYRPISILPAVTKVMERIVHDQLMNYLEINHLINDSQFGFRPKRSTQLAVTLLLDKVRANMDKGLLTGMVFIDLSKAFDTVSHSNLLNKLTRFGIKSYELEWFTNYLFNRSQCVSFDGSLSEKFKVTSGVPQGSILGPLLFILYINDIDDHLISAQII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5C7</accession>
    <name>A0A6S7J5C7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF1758 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014622">
        <property type="protein sequence ID" value="CAB4027136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5C7"/>
    <dbReference type="OrthoDB" id="5967017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008737">
        <property type="entry name" value="DUF1758"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05585">
        <property type="entry name" value="DUF1758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1758" evidence="2">
        <location>
            <begin position="180"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="84"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="148"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05585"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4027136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="289" mass="32585" checksum="D7CA5006A6B305A0" modified="2020-12-02" version="1">MQEDEWSLDKLMTIFRQELEARERANLQCLPSSKFSYQRTKPGTAAALFAGLHDTTCSYCQGKHLSANCKTVTNVAARRDILKRSGRRHHGSLCMGGQLRQQHPNSDPPANQQEPRHPRQPATETEKRDETGIGAKKLQAQPNREGDQQQQRQQATTSQTLYVGTRASILLQTAKVNIYKPGMLENRVNARLILDSGSQRSFETTRVKNQLNLDAEGTENIMIKTFGGEAEELQTCEFLHFNIETVSTYPDLSLTAFVVPTICQPFRHQTTLAAQEIYHHLEGLKRPSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5U5</accession>
    <name>A0A6S7J5U5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064167</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012998">
        <property type="protein sequence ID" value="CAB4024380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5U5"/>
    <dbReference type="OrthoDB" id="608866at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13607" checksum="AA74D2016C2CEDCA" modified="2020-12-02" version="1" fragment="single">PLLQPRCDYLLVNRNGIQFQKLTEILSILVFQAIGKYVHPTSYRQIIETESVQILNVEEQKLVSEDQKHSSNVARVHYQKLRSRDVAIKGRTCMEKLRAEMDTCVEQLKQEHCSGHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JR17</accession>
    <name>A0A6S7JR17_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A072443</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts as a defensive agent. Recognizes blood group fucosylated oligosaccharides including A, B, H and Lewis B-type antigens. Does not recognize Lewis A antigen and has low affinity for monovalent haptens.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the fucolectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019238">
        <property type="protein sequence ID" value="CAB4033431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JR17"/>
    <dbReference type="OrthoDB" id="547680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042806">
        <property type="term" value="F:fucose binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010185">
        <property type="term" value="P:regulation of cellular defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001868">
        <property type="term" value="P:regulation of complement activation, lectin pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051941">
        <property type="entry name" value="BG_Antigen-Binding_Lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006585">
        <property type="entry name" value="FTP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037524">
        <property type="entry name" value="PA14/GLEYA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713:SF6">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713">
        <property type="entry name" value="FTP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22633">
        <property type="entry name" value="F5_F8_type_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00607">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51820">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4033431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="433" mass="49289" checksum="605436A6CF4897F4" modified="2020-12-02" version="1" fragment="single">MREASRIVALSGYPNYPTFRHVVENFTTPSSARAYYGQRLRSWFHAPESGNYKFTINCPYACDFYFTYKHELTKKLFYISTGPVAKTTEELTLVAGELYTLDVVMVFKNPSPEFSLGFQHIGSGLIQNPIGREYLMWKPKPLQGVARSVWNTRFYSMSSRYDVRWFIERFPLPDHQDVLTKFEVPEYGRYYAQRLEAYLLAPTSGSYNFYMACSEGCYFYQGDVYRFSSSGVSATSKYTGGTSYSLSMEGGLFYHLKVLHYVTTTTNYITFGVTLPDGTQLRPIPGKYLWIELPEKVQYEDGAAKQARPVNSHFAINAVDNNPSTCSLSKQSKDPWLRLYTEYIVNVHAVAITNRVEHSSSLDNFKIKVGDNNPAKKDDNLTCYGPVSHIPAGKTVAFPCKRPLTGKYVVVYIYGNSRTLSICELVIYGERVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZZ3</accession>
    <name>A0A6S7JZZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024388">
        <property type="protein sequence ID" value="CAB4038605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZZ3"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="27202" checksum="61E43E11CFAD004A" modified="2020-12-02" version="1" fragment="single">MARTRYCSLIRRLNSPHLKSGCTQANSMWSSVQSKLPKNIFNFTIRYINNTLPTRKNLLKWGISPTFECSFCLNPESLLHVVAGCKTYLIEGRFTWRHDSMLNFIASILKSVNHCNLYADLPGYISPSVLTGDELLPDLLITLENKCIYILELTVGFESNLLTNATRKRQKYQDLINEQLKNYEKVKFVNLSISSLGVFSNPSLDFTEMLKDLKFDEQCRKYLLSMFGKLLTYVSGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K280</accession>
    <name>A0A6S7K280_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019467</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025444">
        <property type="protein sequence ID" value="CAB4039476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K280"/>
    <dbReference type="OrthoDB" id="6223232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="670"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="670" mass="76089" checksum="9945CE60B8CE9B7B" modified="2020-12-02" version="1" fragment="single">AKTELDQMLSSHTVCKSSSNWASPLHMVPKSNGDWRPCRNYRALNAATKPYRYPVPHVQDYSARPAGCKIFSKIDLVRAYHQIPVAPEDVSKTAVVTPLGVFEFKRSPYGLRNAAQTFQRFIDEVYRDLDFVFVFIDDILVFSTTPDQHRHHLRQLFQRLEHYGLVINPKKCELCRSQLSFLGFPQPVDKKDFLNLLTRRKCEEAFQFCKSALASATLLVHPHYNAPTSITSDASDLAVGAVKTPSWFIEGRVFHVYTDHKPLTFAISSGSSQRSPRQIRQLAFISEFTTDLRHVKSKNNAVADAFSRIQINATSYTQIGFLAIAQAQADDYEIQCLKAGVTNLKLVDVLLDGDDNITLLCDSSQGNIRLVVPESFCREIFNLIHNLSHPDARSTCKLVSARCMWNGLNRGVRRWIRTRNGCQQSKIHRHTTAPLQKFDIPDHSFAETHVDIVGPLPLSRGFSYLFTCINRYTRWTEAIPMVDMTAGSCARGLLHGWILRFGLHRSIMSDRGRRFESNLWASLMLLLGIKRNRTTAYHPQSNGIVERFHRQLKTSVKALLNGPNWHDEVKSPLQRPYDGPFLVIQRNDKFFTLNKNGCRDTVSIDRFKPAFLEKMDDPPLNPTTHPMTPVPPDTIEPPLPMVLPTPSLTTRSGRTVHLPRRYRTGEGGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K5U4</accession>
    <name>A0A6S7K5U4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Metabotropic glutamate receptor 1 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A022963</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012349">
        <property type="protein sequence ID" value="CAB4023161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K5U4"/>
    <dbReference type="OrthoDB" id="5984008at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13953">
        <property type="entry name" value="7tm_classC_mGluR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.50.30:FF:000004">
        <property type="entry name" value="Taste receptor type 1 member 3-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.30">
        <property type="entry name" value="GPCR, family 3, nine cysteines domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001828">
        <property type="entry name" value="ANF_lig-bd_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000337">
        <property type="entry name" value="GPCR_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011500">
        <property type="entry name" value="GPCR_3_9-Cys_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038550">
        <property type="entry name" value="GPCR_3_9-Cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017978">
        <property type="entry name" value="GPCR_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050726">
        <property type="entry name" value="mGluR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24060">
        <property type="entry name" value="METABOTROPIC GLUTAMATE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00003">
        <property type="entry name" value="7tm_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01094">
        <property type="entry name" value="ANF_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07562">
        <property type="entry name" value="NCD3G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00248">
        <property type="entry name" value="GPCRMGR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50259">
        <property type="entry name" value="G_PROTEIN_RECEP_F3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="10" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="716"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4023161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="716" mass="79633" checksum="C0D40F829DB7FD0F" modified="2020-12-02" version="1" fragment="single">DTTASTILKSENIKHRSIVPALPNANFNQTPHRRRHSASKTFGTNITLGYDIRDSVNNADVALDAALDFTTLRKRPKASNSLRECECFENTTQPYVVALIGGARSEISQRVNTIVGASSLPQISYSSTSVSLSNKTKYRTFLRTIPPDNFQARAMADIVKNYGWSYVATVASDEVYGHLGVQGFHEEARNRNICIQTQLLFHFNTISDDSKRDIKYIVSGVLGVVAHDARLELFEKHLDNLNPNTTNNPWLIEYFRAKSCTVGNKDGKIDPSLNATTMQKNQASYAIDAVYTVVLGLLEYMKCGKTDGADCLKDIDLEKLREFMLKVNTTGIGERLINYDKHGNPGVIHYHISNLQPDSTAKNGKRFVLVGSWSNGQLHITRPIYWNGGRNTTPISRCSSPCPPGHSSVKGDVSCCWKCVLCPPGQFKIGIGNQECDSCHEGFIPDSNRTRCMRIPEEFIRWDSVTSVILVSLSLCGVLVTSFMFGVYFKYRKTPIVKAASRYPSLVLLVSIAIMFALPLLYIGRPNIAMCHIQPIAFGLLMTLASSLILTKTFRLIQIFNNIVANLKDQPLVTVKMVIVMVALEVILIALFLDRRPIQVNTVVEGPSVPIDCGASAKDLHTAVLLYNWFLALICAVMAFRARSLPANFKEARLISFAMFTFSVIWLSFLIVFSGSIISHFSTYICVAILATALDFVVCMFAPKIFVILFRPELNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAI5</accession>
    <name>A0A6S7KAI5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcription factor Adf-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A032198</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024797">
        <property type="protein sequence ID" value="CAB4038960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAI5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004210">
        <property type="entry name" value="BESS_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006578">
        <property type="entry name" value="MADF-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039353">
        <property type="entry name" value="TF_Adf1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12243:SF67">
        <property type="entry name" value="COREPRESSOR OF PANGOLIN, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12243">
        <property type="entry name" value="MADF DOMAIN TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10545">
        <property type="entry name" value="MADF_DNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00595">
        <property type="entry name" value="MADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51031">
        <property type="entry name" value="BESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51029">
        <property type="entry name" value="MADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="169"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="102"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="169"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="192"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="208"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4038960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="33453" checksum="D0BE8E794415C6E8" modified="2020-12-02" version="1">MADQEERQTFWSAETDFNLNVESPEGVETSPDSPGVTEVVEDDETIQENDAEAPVERLDSAAVEFEKELFLEEVRKYRCLWDINSEAYKNRPIKQNAWAKIATVFSKDVEFLQRQLKNLKDNLKKCLDKRQRMTKSGAAASSLPRCKYFEQMKFLHEKTSNQATESNLTYSQNSVQQVTPSPSATISIPNPSHSTCSSTTTTTKRKASQMSIPPTSSRHGFQKSRQDAIDMAILKQLENTDKTINKSLANEETDDEVSHYCKSLIPVISALALRKKRLAMIKIRQLLFDIEFED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KB05</accession>
    <name>A0A6S7KB05_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Prolyl endopeptidase FAP-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A038941</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013559">
        <property type="protein sequence ID" value="CAB4025353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KB05"/>
    <dbReference type="OrthoDB" id="16520at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.140.10.30">
        <property type="entry name" value="Dipeptidylpeptidase IV, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002469">
        <property type="entry name" value="Peptidase_S9B_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050278">
        <property type="entry name" value="Serine_Prot_S9B/DPPIV"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11731:SF200">
        <property type="entry name" value="DIPEPTIDYL PEPTIDASE 10, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11731">
        <property type="entry name" value="PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00930">
        <property type="entry name" value="DPPIV_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82171">
        <property type="entry name" value="DPP6 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0720">Serine protease</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4025353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19518" checksum="62BDEAC869CA0501" modified="2020-12-02" version="1" fragment="single">MDSYYESTEESPTKAHLYSVDLTGKKTCISCKLKETKDGRCTNYFSSFSKKSSWYILTCSGPGVPVSWFRSTRDNTVIPLESNADLQKRLETTDLPTYKYHIVKTTDQEYDIHVRETRPPNFDKKKKYAVLFNVYGGPSSQQIMETYQTGYETYLTSNYDIIICEVDGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBH6</accession>
    <name>A0A6S7KBH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021766</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031455">
        <property type="protein sequence ID" value="CAB4043076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBH6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="25238" checksum="5C1942103128F264" modified="2020-12-02" version="1" fragment="single">MDIDTTLSQCDFGETVGDECHKLSYTRKQGMENLSDYSEEVQETFLMRARIAHQQDKTNMTICMHHSKMYGNVFERKFNKCCNIFNSHKAKAKGCHIITLRLAKQLISQKGIDVIPGWQLCRNCFHKARKEEENDEPAEAGDEIDYEITEFERDATKEAARGVMNTSFEELAVSPIKTHGLSKQRKINEAKGKIDRACASIEERVAAAIDVDCEELKRKDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KHG4</accession>
    <name>A0A6S7KHG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gastrula zinc finger</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035934</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014414">
        <property type="protein sequence ID" value="CAB4026802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KHG4"/>
    <dbReference type="OrthoDB" id="6618820at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02178">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="184"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="776" mass="89224" checksum="5A2C3585609815BF" modified="2020-12-02" version="1">MASYFNMNEFSVEQLLALNSIIDSDKDIDTRVEDILMDRNYRIAPDDKGESPFQGERQFVDEVDRDMETKKPRRIPKNYKGRRGIMPTWKYSDRQKAKALLVEEAYQGFLSKGVQGLPPRMGGRWRTDDPQVNEEIKRIENERNPKIKRPRGRPPKVKVDAEVKVPKKIGRPPKAKVDTEVKVPKKRGRPPKAKANVKVRKQTVAERFLNQRKVKLSVPADSIITPTGPGKFTIHVDLNKRPVRKAPEVPKGVAPWRPIPKPRTVLPRERLVPKPRTKLLKERPVPKPRTRKLVSPPKVRKPVRVSREVKEQPAVVTPEEYEIDPFGTDLEKPFHRKIETAANGAAVTYSITPHYMDPLDQMTASRQVVRGILVNELKRMGGLKYTATLKVRMSKEIGDGKTKKDSVYFKSKTGTATNFEDIESTAAQNQLTILSRIETFQNLGSNWIILNIESHYVNIAMYKPLKGSSYMKLPKDISNSMCGLINMKNNDNLCFLWSHVRHLNPKARRATTITQKDREFITNLDYDGIDFPVKISDIDRIERKNSINISVFGYKGKKQFYPIRNSKSAYEDHMELLLLGDGKGNNHYVLIKDVNRMLFSVSKHTHKKHFCLHCLHSCVSKEVLEKHKETCLEVNGTQAVKLPKEGTKIKFKNHRNSMPVPFVIYADFESILVPEERKVESENPEDKSSTDLYQTHKACSFGLKTVCHYDDKYSGEYKSYVGEDAALVFLKTVLKESFRCREMVNNIFKKKMVITPKQEFEFQAARNCSICGYDLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KWC7</accession>
    <name>A0A6S7KWC7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein uL15m</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">39S ribosomal protein L15, mitochondrial</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A075794</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017189">
        <property type="protein sequence ID" value="CAB4030862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KWC7"/>
    <dbReference type="OrthoDB" id="361383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005762">
        <property type="term" value="C:mitochondrial large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.100.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01341">
        <property type="entry name" value="Ribosomal_uL15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030878">
        <property type="entry name" value="Ribosomal_uL15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021131">
        <property type="entry name" value="Ribosomal_uL15/eL18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036227">
        <property type="entry name" value="Ribosomal_uL15/eL18_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005749">
        <property type="entry name" value="Ribosomal_uL15_bac-type"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01071">
        <property type="entry name" value="rplO_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12934">
        <property type="entry name" value="50S RIBOSOMAL PROTEIN L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12934:SF11">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL15M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00828">
        <property type="entry name" value="Ribosomal_L27A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52080">
        <property type="entry name" value="Ribosomal proteins L15p and L18e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Large ribosomal subunit protein uL15/eL18" evidence="7">
        <location>
            <begin position="98"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="33"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="197"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="206"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="227"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="238"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00035423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4030862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="28780" checksum="EDBF26AD5C1D18D6" modified="2020-12-02" version="1">MAAKGKAFCHVEKNLKALEKFPRVALNNIRDFPEAFKPHHRKGRGPGSGRGKTSGRGHKGQGQRGTLPRTGFEGGQTPFYLRVPKHGFKNVNKTNYVPLNLNRLQYFIDCGRIDINEPINMNTLWTTGAVSKVGDGVCLLGTGSETFNSKINIEVSRASKKAIESVEQKGGQITCAYYTKLGLRVLLKPWKFDEKRMPRRAAPPPKLEKYYRDPTKRGYLADPQEIDVERQKVHQNIDNDSESLVNKVKNMNLSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L1A5</accession>
    <name>A0A6S7L1A5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007581</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019272">
        <property type="protein sequence ID" value="CAB4033473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L1A5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="32508" checksum="68AE4FE07A13BCA4" modified="2020-12-02" version="1">MSSVSLILFLSWHAIFIKEIGLAVAEEECSSNADCHANCHCASHEYCCKRGNYPNVCRRSCVGEECAENTDCGGPHEHCDSNKKCKNRERSSSLSGGKITRIVISVLSSLIAVSLCILLWRCYKKRRHRDRTNRYHATMVTTIAPGQQRTCCPYDPTRQPPQSPVNRHSQQGGLMPLPYHQRPASISQTPSRKVRKGAFYIPPENVNNPEREWSTARNPVLQGNNTRQTHTYPSSLQAHRLVQISSPSIQSYTSASPPSEADSDFAADVTESYINHLNIIPEAYPTGPLSSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LHJ8</accession>
    <name>A0A6S7LHJ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A014033</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022332">
        <property type="protein sequence ID" value="CAB4036722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LHJ8"/>
    <dbReference type="OrthoDB" id="5981195at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00033">
        <property type="entry name" value="CCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00037">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.70.10">
        <property type="entry name" value="Complement Module, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.100.10">
        <property type="entry name" value="Mannose-Binding Protein A, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001304">
        <property type="entry name" value="C-type_lectin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016186">
        <property type="entry name" value="C-type_lectin-like/link_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050111">
        <property type="entry name" value="C-type_lectin/snaclec_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018378">
        <property type="entry name" value="C-type_lectin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035976">
        <property type="entry name" value="Sushi/SCR/CCP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000436">
        <property type="entry name" value="Sushi_SCR_CCP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22803">
        <property type="entry name" value="MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00059">
        <property type="entry name" value="Lectin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00084">
        <property type="entry name" value="Sushi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00032">
        <property type="entry name" value="CCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00034">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="C-type lectin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57535">
        <property type="entry name" value="Complement control module/SCR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00615">
        <property type="entry name" value="C_TYPE_LECTIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50041">
        <property type="entry name" value="C_TYPE_LECTIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50923">
        <property type="entry name" value="SUSHI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0768">Sushi</keyword>
    <feature type="disulfide bond" evidence="3">
        <location>
            <begin position="31"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4036722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="228" mass="25985" checksum="DBF3EEF6A1852635" modified="2020-12-02" version="1" fragment="single">VQTRCKDISSIANGLVTLKSTECGGKAEFSCDKYYKLVGSPQIFCNESGNWSEGTPYCKLYTDNIPCPCGWKKILNSCYLFVKNKVTWDTAREDCLQRGGDLVIPTSTTECVLLSQRASILQMSIPWIGLFRRYDGKFYNTCGKTPNFTRWYPNQPDNYGNREKCGHMLVNGKYKAKWNDMACNAKYSYICEFKQPRCEYLAKILRCGASSMVRRHPSLETSKLLLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LM07</accession>
    <name>A0A6S7LM07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083491</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020273">
        <property type="protein sequence ID" value="CAB4034619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LM07"/>
    <dbReference type="OrthoDB" id="5967112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11273" checksum="A7BB7B27960A4F3E" modified="2020-12-02" version="1">MAKKLAIRSLRRGIGSMDYVNTLLIMEDDLDEADGSERMGEFGESSECPSNVPSNANEDIEGSSSMTQNQGPSQDDTPPAELPEWCKCGKCRPMPQEIYQAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LN95</accession>
    <name>A0A6S7LN95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021008">
        <property type="protein sequence ID" value="CAB4035389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LN95"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd23385">
        <property type="entry name" value="beta-trefoil_Ricin_MRC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035992">
        <property type="entry name" value="Ricin_B-like_lectins"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50370">
        <property type="entry name" value="Ricin B-like lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50231">
        <property type="entry name" value="RICIN_B_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="31274" checksum="D2FDBE343C218A71" modified="2020-12-02" version="1" fragment="single">MKNQNSINCLEYFGTTNQKFLRLYIFTLITLLTHSCDGEASGQVINTTMFEIPSKDQKSYILRDCRKMAGDDIDCKCAYLGRECTQTDVENCINCSCLDSSTNSTRIFYVKKRYGAVCLSVNNIFNAAGFGEKFLSHNPIYKLCARADIDGRIRHTKYCTFNNDPRQVWVWTPGNLLINAQTSTCLQARKTKSAFILSMTVTRCNSTDLGQKWRCNDSRLLWGTSLDSPNITHAVRYYAQDNYLKARSVRQVSRGNTWTVFPSNNRSVCSASHNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6J2</accession>
    <name>A0A7D9D6J2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">N-terminal amino-acid N(alpha)-acetyltransferase NatA</fullName>
            <ecNumber evidence="4">2.3.1.255</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A082828</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N-terminal L-alanyl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-alanyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50500"/>
            <dbReference type="Rhea" id="RHEA-COMP:12701"/>
            <dbReference type="Rhea" id="RHEA-COMP:12702"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:64718"/>
            <dbReference type="ChEBI" id="CHEBI:83683"/>
            <dbReference type="EC" id="2.3.1.255"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>N-terminal L-cysteinyl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-cysteinyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50512"/>
            <dbReference type="Rhea" id="RHEA-COMP:12707"/>
            <dbReference type="Rhea" id="RHEA-COMP:12708"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:65250"/>
            <dbReference type="ChEBI" id="CHEBI:133372"/>
            <dbReference type="EC" id="2.3.1.255"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>N-terminal L-seryl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-seryl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50504"/>
            <dbReference type="Rhea" id="RHEA-COMP:12703"/>
            <dbReference type="Rhea" id="RHEA-COMP:12704"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:64738"/>
            <dbReference type="ChEBI" id="CHEBI:83690"/>
            <dbReference type="EC" id="2.3.1.255"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>N-terminal L-threonyl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-threonyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50516"/>
            <dbReference type="Rhea" id="RHEA-COMP:12709"/>
            <dbReference type="Rhea" id="RHEA-COMP:12710"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:64739"/>
            <dbReference type="ChEBI" id="CHEBI:133375"/>
            <dbReference type="EC" id="2.3.1.255"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>N-terminal L-valyl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-valyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50508"/>
            <dbReference type="Rhea" id="RHEA-COMP:12705"/>
            <dbReference type="Rhea" id="RHEA-COMP:12706"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:64741"/>
            <dbReference type="ChEBI" id="CHEBI:133371"/>
            <dbReference type="EC" id="2.3.1.255"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>N-terminal glycyl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetylglycyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50496"/>
            <dbReference type="Rhea" id="RHEA-COMP:12666"/>
            <dbReference type="Rhea" id="RHEA-COMP:12700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:64723"/>
            <dbReference type="ChEBI" id="CHEBI:133369"/>
            <dbReference type="EC" id="2.3.1.255"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the acetyltransferase family. ARD1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.255" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020000061">
        <property type="protein sequence ID" value="CAB3977654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6J2"/>
    <dbReference type="OrthoDB" id="25586at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031415">
        <property type="term" value="C:NatA complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990189">
        <property type="term" value="F:protein N-terminal-serine acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990190">
        <property type="term" value="F:protein-N-terminal-glutamate acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04301">
        <property type="entry name" value="NAT_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.630.30:FF:000101">
        <property type="entry name" value="N-alpha-acetyltransferase 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045047">
        <property type="entry name" value="Ard1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23091">
        <property type="entry name" value="N-TERMINAL ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23091:SF4">
        <property type="entry name" value="N-TERMINAL AMINO-ACID N(ALPHA)-ACETYLTRANSFERASE NATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00026110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00049434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3977654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="19422" checksum="C471C684F36EC57C" modified="2020-12-02" version="1">MNIRCATPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGKIVGYVLAKMEEESDEAAHGHITSLAVKRSHRRLGLAQKLMEQASRAMVECFNAKYVSLHVRKSNRAALHLYTNTLKFNIYDIEPKYYADGEDAFAMRRDLSEFTTELTKSIAAVKIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGN7</accession>
    <name>A0A7D9DGN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A086014</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000776">
        <property type="protein sequence ID" value="CAB3984712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGN7"/>
    <dbReference type="OrthoDB" id="9832999at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF23">
        <property type="entry name" value="ZINC FINGER PROTEIN 729-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="151"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="191"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="208"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3984712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="320" mass="36846" checksum="81B02D45C125BA43" modified="2020-12-02" version="1">MHVRHTEDKVPHSEEKVAHSENKVPHSEDKVPRTEDKAPHSENKVPHSEEKVAHSEDKVLHAEDKVPYTEDKVPHSENKVPHSEDKVPHTEDKVPHSEDKAPHSENKVPHSVDKVPHTEDKFPHSEDKVAHFENKDPHSEDKVPHSQNKVSHSEDKVPHTEDKVAHSEDKVCHSENKVPHTEEKVRHSKDNVPQTENKVPYSENNVHNTEDKVTHIEDNVPHSENKVPHAEEKVPHSEDNVPHFEDKVSHSEDKVPNTEDKVPHPENKVPQSEDRVAHSEDKVHHSEDKVHHSEDKVFTMRTRFLALKRRFLTLKPGFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DVG8</accession>
    <name>A0A7D9DVG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029969</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002310">
        <property type="protein sequence ID" value="CAB3993696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DVG8"/>
    <dbReference type="OrthoDB" id="6022609at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="654" mass="73032" checksum="BF6C23D0787574AF" modified="2020-12-02" version="1">MAANQAYYDRVTTYNVWKTPRAVGAAISSFDVIVGSSAQTMVFDADVLLQRGQLSVAILEQTPLYNCRDKCYTVTDADIANATSLTSGNLANVATLAIGEIYQFAVTTMETKFYFNMTALEQKLNLSSLRVINDEWALFVPDIVAAAIKRRADMLSVTVYELAELLNTNTSTLYGYNLNQIESIFNALVTRINHFRTQPFSVSISGQSTFKWQSRTMAYYANQTSQLSVRHLEILYKWASAQLFALENVQLSSYFSQCNSLSTAGSSFDLSQHIFGYQTTFPSCNVAFVLSRTLSEDEVRFNLSTITDRNIMSIIRNASSISSWFDFYQLLFAISEGIWMETPLITQVQARQGLTNAQIITYSVPQIAYAIRTLNGSGDLNLIMRDNYQQYLSLLLQTYDFSKSTLGALTGRTEAQIDSLTIHEAHNLVFEALYLRYNINEFLSKLTVAGVDNFVAINLPSFEWYRLVRVAIESSFDQLASAFSSNLTAGTGGVSVIILADGTSSIQIGSDSIFSIFIISASRLALCLGTTVSEIYQRTMTSYQTLYQSSAVDLVNRKIIFETENFNVLLARLGIILGSIRNTETIGQTIENRVGLTAEQLRCMYGWSSEFTSFLFGITWANVSSFRLCNDYTSWPLHRIVVALLHSSPAVCRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DVK5</accession>
    <name>A0A7D9DVK5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002476">
        <property type="protein sequence ID" value="CAB3994491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DVK5"/>
    <dbReference type="OrthoDB" id="5953156at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018790">
        <property type="entry name" value="DUF2358"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31094">
        <property type="entry name" value="RIKEN CDNA 2310061I04 GENE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31094:SF2">
        <property type="entry name" value="RIKEN CDNA 2310061I04 GENE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10184">
        <property type="entry name" value="DUF2358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="68" mass="8060" checksum="65B4B87DC69E503B" modified="2020-12-02" version="1" fragment="single">TLKSYKYIMNLMAYAGKIFWTKASLDILRITKHTEDNTIKVRWAAKGVPWYQLPFFLLSGKPQSLFYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DY95</accession>
    <name>A0A7D9DY95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051572</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002708">
        <property type="protein sequence ID" value="CAB3995669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DY95"/>
    <dbReference type="OrthoDB" id="10064731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14606" checksum="1FB3AD299E4E7409" modified="2020-12-02" version="1">MDATGGPVCYFIKNGVLMRKWRPPDVSADDEWAFRYQIIIPKSYQSEILSLAHDTPLSGHLGINKTLQKVTTHFYWPGVRQDVVQFCKTCHTCQIVGKPNQVIPKAPLKAIPALEEPFSRVMIDCVGPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E5P3</accession>
    <name>A0A7D9E5P3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004023">
        <property type="protein sequence ID" value="CAB4001191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E5P3"/>
    <dbReference type="OrthoDB" id="7699448at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018061">
        <property type="entry name" value="Retropepsins"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00077">
        <property type="entry name" value="RVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="257"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="41210" checksum="7D209A88940604C2" modified="2020-12-02" version="1">MEQQPNNPTTVSMAHSVPIRPMPEFNPDAELGASVATRWKNWVADFDMFLLASGVTDPKRQRALLLYQAGARVREIFKQLPDTGEDKDYDIAKAKLLAHFEPQKNRRYEVYRFRKAVQEPRETLDQFHTRLRTLAQTCEFASPDFELEEQIIIGGASSKIHKRALRDPSFNLAAMLLVGRRDEQSAFQAKDIESTSPDSATSTFDEINALYRPTGCRNCGGSFPHKGLCPAKGKQCRKCDKLINHFQSVCRSRPIAQPSGSLAQQGSTQNYHSNATRNPIRPLEHYTTGDSDDDYMYGIHSLDKSPRVNVTVGGHSFSTIVDTGATINVIDERTYQTLRGISLQKTTTKAFAYNSTTPVPFLGKFTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBR0</accession>
    <name>A0A7D9EBR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A058642</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004959">
        <property type="protein sequence ID" value="CAB4004642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBR0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="111"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14282" checksum="02EADC73EBBC5EF2" modified="2020-12-02" version="1">MTEPIDNPGPTPDVTTGPPKKVKDPRRVAQGKRLAAISQQAKKAKKAKEEENLKAKVREEYTMNESGWISVERLCLVLGVGIGLGSLYLTWRREKSPVKRDDEIMYENNNDVEKDPPKEPFDDLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EC95</accession>
    <name>A0A7D9EC95_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A078046</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005068">
        <property type="protein sequence ID" value="CAB4004996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EC95"/>
    <dbReference type="OrthoDB" id="6430111at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="31"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="169"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="22618" checksum="5F5AF58F065FDB38" modified="2020-12-02" version="1">MHGRRLLSLPTQDEVEDKDWELTSTDIAKRERHLASLLDHFWRRWKTEYLLELKEAHRDRKSVQSHKELIKMNDIVVVHDENRSRSLRRLGRVMHLVRGNDGKIRGAKVKVAERGKKPTTLRRPIQRLYPIEIGNQDITQQKVDMDSTTIQPQKEEPTQRPRRAAAIKATEKRRELIRNEQLSTEISRSPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESX3</accession>
    <name>A0A7D9ESX3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008664">
        <property type="protein sequence ID" value="CAB4015298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESX3"/>
    <dbReference type="OrthoDB" id="2194416at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="14987" checksum="0AC2667D9474D1FC" modified="2020-12-02" version="1">MFKENEGIFYRKTNSTKERRGEVPGIDKFVESWAGIWEDETSTPHRRWMRTVTEKVRPKETNIEELIITKEKLYETVRKRKNWSAPGIDEIQNFWWKKFRGTWKALVRRFNEWIEQPERIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWP1</accession>
    <name>A0A7D9EWP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023511</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010229">
        <property type="protein sequence ID" value="CAB4018942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWP1"/>
    <dbReference type="OrthoDB" id="5962731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="26624" checksum="38DFD3683F595278" modified="2020-12-02" version="1">MGNTPAPAISTEAVYKTAEFYREDGPQAANLPKHSSYVDDLIDSRPSKPDALKIAKESEDILAKGGFAVKCWQFGGETQPRLKEELLKLDLPEKSVESSDQRLIMLKGTDEILRVLGLGWNPKKEPLPGEKKVHVAAASSIEALLIDYERFSSINKAIWVVARLLNIAKKKSFKDGRTLSISVKQLQEAENFIVKEVQKSFESELTKTDRKGRKGGRFACLNPVQDESGLWVVGQRLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9M6</accession>
    <name>A0A7D9H9M6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Bone morphogenetic 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A025617</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the TGF-beta family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000171">
        <property type="protein sequence ID" value="CAB3979146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9M6"/>
    <dbReference type="OrthoDB" id="5986663at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005125">
        <property type="term" value="F:cytokine activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008083">
        <property type="term" value="F:growth factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13756">
        <property type="entry name" value="TGF_beta_BMPs_GDFs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.90.10">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029034">
        <property type="entry name" value="Cystine-knot_cytokine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001839">
        <property type="entry name" value="TGF-b_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015615">
        <property type="entry name" value="TGF-beta-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11848:SF263">
        <property type="entry name" value="PROTEIN DECAPENTAPLEGIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11848">
        <property type="entry name" value="TGF-BETA FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00019">
        <property type="entry name" value="TGF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00204">
        <property type="entry name" value="TGFB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57501">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51362">
        <property type="entry name" value="TGF_BETA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0339">Growth factor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3979146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="377" mass="41976" checksum="D235B6FFB71A3B68" modified="2020-12-02" version="1">MYTAVILLIVLAFCKQTCGGVLVKGNPIGHQRFPGFMRHLYNQFLSGTAPFSNIVHSNAAIAVNRSTVTFEASFSELGFLQRENLRRARLRLDIPQQNHCNLTGLNIRVMDQKTGQIFGDYVMFPRHSGVNFLILTKSLRKLAAKLKPDTKLKVRITLQNPTTDKNLCSNVVSGLSSEAYLVTNTDEFKTRKRRSTEGISKTFRRNAEGVSQIFRRDTESISRMARSAEVVSKMFRRAASRVCPVCSPSMSRSVSEGMSNIFRRSKRNTPTCIMEDVTVNLTNANSSASIFILPKLFKTGVCRQRQTVPSSNDPMIQALAQAIMTARQTLPASSNSACCLPSKFQKLTVLYFDSMQHVVLRHVNNAKVTSCACSNAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HB19</accession>
    <name>A0A7D9HB19_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000101">
        <property type="protein sequence ID" value="CAB3978287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HB19"/>
    <dbReference type="OrthoDB" id="5987099at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="483"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="538"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="485"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="564" mass="63986" checksum="09EDDA99F1BFF9C7" modified="2020-12-02" version="1">MSLQEIKTDYLTHWLNQLIESGIINREHLIYQNIEAFLTEQLSQPNPPVTNWEQWPILYSYCCSDGPASKAQLSEPTGLCFDFDSAIICCFGGSKNGYIKLYSAVDFACRFMAAIRQIYHAIGFLPKKEQNYLAKVGKNPAAPFVEGTDQLAASLTYLESLIVERKKYLKAAPSGPEGTVYHVSVQGLAETVKSLQGHIQSFKQLGMQDILAHLSLYAFVNEARKEHRFAKHKQKGQCRHPTLQQYVHSKGSHEIEQIKKICNCSHDYHTNNYSAYQPTHQSSLSSVKTIAQYRKWSEKFHPQPKVVEQEQAKEDLKVARMLNVLTKSKPTQNIRELYRYKCGYGPCVIIQKDTLSEGGDIVAINPGTENEVPSGDKWWLLQVNKPHHLSKNRSGCHVFGFWLAEKDTIDMSVSGKHYSLLPQSVKTYFGTIIKDNNNVPLVIPVEELNSGWQNGQVVYAFTEEYCRTLDLISHSFRKGLHAADNNEEDGASDLEADEDDRQPPDIHEVELMAMQRRRVVCGVEGQIFSSYRDLLNPRQAGGRRQRRIENLGNASTESEAERNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HBU4</accession>
    <name>A0A7D9HBU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fibroblast growth factor 10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069754</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heparin-binding growth factors family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000322">
        <property type="protein sequence ID" value="CAB3980769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HBU4"/>
    <dbReference type="OrthoDB" id="5987799at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008083">
        <property type="term" value="F:growth factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00058">
        <property type="entry name" value="beta-trefoil_FGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002209">
        <property type="entry name" value="Fibroblast_GF_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008996">
        <property type="entry name" value="IL1/FGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056378">
        <property type="entry name" value="Let-756-like_FGF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11486">
        <property type="entry name" value="FIBROBLAST GROWTH FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00167">
        <property type="entry name" value="FGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00442">
        <property type="entry name" value="FGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50353">
        <property type="entry name" value="Cytokine"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="27215" checksum="BC261674C7386FD9" modified="2020-12-02" version="1">MWLSKSIALRIEIEVLHIFVFLAYAIIVAEPTKLFENSDSSSAKSTDTGEPTSTKLKHIKSKSWEELRQQLLENNLSSDTFQKRTLGSLGERLIQRSRRSVLTLKPTNSRKAQLLSCKLLNYNLAIMDNGNVLGLKNQSSPYVLLDLERYDGSLATIQHPTSKRYIGMDSNGTVYSTTTFGDEVLFNYLTGNYPYIQFSSYKYKHNGKDMLIGLRADGQTKKGRKVSVTHKSSQFLMVATI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIJ1</accession>
    <name>A0A7D9HIJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044319</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000605">
        <property type="protein sequence ID" value="CAB3983378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIJ1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="392" mass="43921" checksum="210F61F229BC6789" modified="2020-12-02" version="1">MMFICSKITRYEVLFIVALGLFTHVSCQFPNFIVREIGSSINFTCPDDLTNNHTYKFSALKKQATPELITPGARIKLLGPILMIVDLEWDDNGQYFCSIYNSNGNQIGNTKSLAILSLKTADNYEDTADHEQAKPAVMTDLALSVEKVQAVLGSLDCTKATRPDGIPARLLNKTASVTNLLEVLDYTGSELDNGGQVDAIYLDLSKAFDKVSHSRLKHAHGWIWRQLIQWFDSYLTNRQQRVAVLGATSTTLPVTSGGPQGCILGPVLFALYVNDLPDAVKFSQVAMFADDTKLFSIITTENDCEHLQNDLHNLRVWSSESGPSFNDKKCKVQHITRKFTPLTTTYKLSSNLEQIECWSRITSPGTNKFMISWRKQISYWAISLRKVNVIHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKL8</accession>
    <name>A0A7D9HKL8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082692</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000799">
        <property type="protein sequence ID" value="CAB3984906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKL8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12256" checksum="0A977C598D2F2B29" modified="2020-12-02" version="1">MKRMRTTTDSDSATSESDVENLYNTDNEAQTDSASESDCDNVNDTSSKVGDEYESDPWAPLKAEAAQQSLSEFEELTQNFTAEGGEQNQIQSLQRTWTIQKWMMTQRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKY9</accession>
    <name>A0A7D9HKY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Persulfide dioxygenase ETHE1, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000118</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001007">
        <property type="protein sequence ID" value="CAB3986379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKY9"/>
    <dbReference type="OrthoDB" id="449487at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050313">
        <property type="term" value="F:sulfur dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070813">
        <property type="term" value="P:hydrogen sulfide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051682">
        <property type="entry name" value="Mito_Persulfide_Diox"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43084">
        <property type="entry name" value="PERSULFIDE DIOXYGENASE ETHE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43084:SF1">
        <property type="entry name" value="PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="1">
        <location>
            <begin position="17"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13342" checksum="2BB6CCAA3E241523" modified="2020-12-02" version="1" fragment="single">MSRSRLVFRQLFDFESSTYSYILGCVKTRKAVIIDPVDTKVSRDYHVLKELDLKLQYAVNTHVHADHITGTGWLKALIPSCQSVLSKAAGGQADVLIDDGHVIEFGDQALECRLTPGHTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNC3</accession>
    <name>A0A7D9HNC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001447">
        <property type="protein sequence ID" value="CAB3989219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNC3"/>
    <dbReference type="OrthoDB" id="2376984at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034632">
        <property type="term" value="F:retinol transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026612">
        <property type="entry name" value="STRA6-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14752">
        <property type="entry name" value="RBP_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24153" checksum="BA2797BCE040D1E8" modified="2020-12-02" version="1">MTGLIDDFIDITHEIRSLSSSSTLSGNTTNSELIRQTLSNDALLAVLANKTALSAEEIELTITSIYVNAQNIQNVYEMFTNSVDLNLNDSIQANVTYCGGRLDNNNLVIASFVPALIIMIILSCVNTRLWKRGCCSGRPGLAIPVNLLDSYEDRYTYSFAFAATASSIVQIILNNDFSAVLGEEFREIQVQSPSYVIGKQIFHNTFHHHLSLQLRTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HRP6</accession>
    <name>A0A7D9HRP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068852</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001123">
        <property type="protein sequence ID" value="CAB3987121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HRP6"/>
    <dbReference type="OrthoDB" id="413361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16315" checksum="21C320D3ED6468E0" modified="2020-12-02" version="1">MKDMGKLHYCLGVNIKMMDGVLQMSQEQYIHKILHKYKLQDCKPVSTPMVVNVKLVKDDGYSKAVDPVEYQSMGTVKLHLQYEASDKDIEGYSDADWAVDSYDRRSTSGNIFVMSNGAISWASQKQPTVAFSTAEAEYIALYLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HT95</accession>
    <name>A0A7D9HT95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Adenosylhomocysteinase 3 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A036861</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001467">
        <property type="protein sequence ID" value="CAB3989325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HT95"/>
    <dbReference type="OrthoDB" id="6021944at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033353">
        <property type="term" value="P:S-adenosylmethionine cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1480:FF:000002">
        <property type="entry name" value="Adenosylhomocysteinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1480">
        <property type="entry name" value="Adenosylhomocysteinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042172">
        <property type="entry name" value="Adenosylhomocyst_ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000043">
        <property type="entry name" value="Adenosylhomocysteinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020082">
        <property type="entry name" value="S-Ado-L-homoCys_hydrolase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23420">
        <property type="entry name" value="ADENOSYLHOMOCYSTEINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23420:SF0">
        <property type="entry name" value="ADENOSYLHOMOCYSTEINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05221">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00996">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52283">
        <property type="entry name" value="Formate/glycerate dehydrogenase catalytic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00738">
        <property type="entry name" value="ADOHCYASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="372"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="306"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="50"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="306"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="322"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3989325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="407" mass="45608" checksum="408F49775D177846" modified="2020-12-02" version="1">MEKDLWNRKGSIAVSSISAGASPKIGQFQGQTPKRALARTYSPFRKSRSRSSSFSSCDSTASYSDNSISSDEDDGVSPREKEQQSSSGFSDFCIKNISRADFGQREIEIAEQEMPGLILLRKRNANDRPLEGAKIVGCTHVTAQSAVLIESLCMLGAQVRWCACNIYSTQNEVAAALAEKGYPIYAWKAETEEDFWWCIEKCINAPGWNPNMILDDGGDSTHLMYKKFPEQVDELTRSRSLSELEKTTEHRVAESAKSTAKHMQKQAALSAEKASKNKVQLRTLQEENKFLLQKVQTLESELKWSKKEKKRLTSEREKRDSGQLNHKNSSTNAISRQVSQDSMQNNVEDLTQNKESAKRIDVLNEQNSTLKYFLLPVFFILLAMLVSFAFGIIGSNTPVSNQASKTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I029</accession>
    <name>A0A7D9I029_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mediator of RNA polymerase II transcription subunit 30</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Mediator complex subunit 30</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A051818</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Mediator complex subunit 30 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002992">
        <property type="protein sequence ID" value="CAB3996980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I029"/>
    <dbReference type="OrthoDB" id="10067025at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016592">
        <property type="term" value="C:mediator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021019">
        <property type="entry name" value="Mediator_Med30_met"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31705">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31705:SF4">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11315">
        <property type="entry name" value="Med30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0010">Activator</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3996980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21542" checksum="1FC11E2CBC838FBD" modified="2020-12-02" version="1">MAAHRGMGHHQMTNLAFHSQAMNFPPTIQVEMADTLPIDASKTSIAVAVEGQELVQEIVQKASALFKSLQDCEVLNVEKSGSKEKQQQLSKSAQETLESLKELINKLRNVYDETRRRMPEVHDVLSSGNIEHLLPLEDDPSQMVMDMHDAERESLIKEVQRKNETIKVLIEKFRALIQDLNLIVQLETSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7Q3</accession>
    <name>A0A7D9I7Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045148</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004495">
        <property type="protein sequence ID" value="CAB4002953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7Q3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="76"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="135"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="42"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="76"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="123"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4002953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="28937" checksum="291AD13A0662E9F0" modified="2020-12-02" version="1">MSVLQLEENKKSPKKSMVWLKAKDLILLKEIAAEGVMSNKPRSRERGQEWHKKKDQRVKVEAESLLEELIHIEGEMERQVESENEENQQRIEQERGQALEMRERAMETLGQTRKRTRQNGEGSGKEQKRRMSGDMMKWLQERVELEKEEKKAKREEEREYHEVQRVQQEEMTQAMHQTQQQFAMQMKLSDQFVQQQLQQQQQQHQQHQQEFNFLQQQMIAIMQQQQQQTNVLVNLLEKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBP8</accession>
    <name>A0A7D9IBP8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005102">
        <property type="protein sequence ID" value="CAB4005131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBP8"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="40872" checksum="C2587D8D5A2F8EDD" modified="2020-12-02" version="1">MINNWLRTLDDKSSYLRIVFLDFSKAFDRIDHNILVPKLLALGVRLSLIPWICSFLLNRRQSVKIDNFQSDWGINNAGVPQGTKLDPILFIIMINDLELASSSTDHWKYVDDVTISESLKKNEVSVLQSDLNTIERWTVNNNMKLNGKKCKEMIVSFVRSENDIPRLLIDGLPLDLVPSFKILGLTMNNKLKWQDNTEALVKKASKRLYIIRVLQRCGLSPNDLLLVYFSMVRSILEYACPVWHTMLPKCLGVKIEKVQKRAFRIIYPTTDCEDALNIAKCKRLVDRRQELCAKTLKKILKPDAHLNHLLPPLREESHELDLRNNSNFTLTKCRTERFKTSFIPAMTANFNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9II26</accession>
    <name>A0A7D9II26_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Opsin Rh4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A058688</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006031">
        <property type="protein sequence ID" value="CAB4008130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9II26"/>
    <dbReference type="OrthoDB" id="2105199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24228">
        <property type="entry name" value="B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24228:SF59">
        <property type="entry name" value="NEUROPEPTIDE RECEPTOR 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4008130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="35021" checksum="7BC350E5171BE2B6" modified="2020-12-02" version="1">MYYDQYTAVTWIVVPCYILTILIGSFGNAVILRAYFTDPTIQKKTYHYLLANGAFTDLAMCCVFTPLLLIYRANEHAHTIELSPLCELGLFSSTLSVSMQYVVFPLLSINRQDVASRPLTPWLTKRQCKTILIGAWSGCAIVSLIHVGILHIPTDPDDSPKLYRCILVSQSLDPFSGAFFVYSILLYCASIFVTVRCYFQMYRRTSVAESLHTVLTNDDAGRARICVIVAIVYTVFWTPFVLLQFYGIFGQYTEVVFNLHALSSIFGVAASAVSPYLYCSMDGYYKRRFAEMVKSLKCSQDDEIYEMDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJM3</accession>
    <name>A0A7D9IJM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107346460</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006136">
        <property type="protein sequence ID" value="CAB4008480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJM3"/>
    <dbReference type="OrthoDB" id="5976685at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="113"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="115"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="164"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="414" mass="46821" checksum="89B1A631937F4405" modified="2020-12-02" version="1" fragment="single">MAEELKKLVKIRGGHRASLTKTLAVTEELLTQSTEIFEETQASDFEIKLTQQRVILGEKLPLLKSFDDKIILLVEDGNIEDEVASADDIRQAIQRAIVHIDLILEKLKKKWNKDSGSSPSNLESSLSQATVPHTSNSTVKPNPPEQEASHQPTPSEEHPRMQPQGHQPTNQSREQPQNTHVNMFVDAQSSILLQTARAPIYNPKDPSKTLQARLIFDSGSQRSYITSTIRDKLNLPIVRRDTLKINAFGSKDEDITSCDMVQFQLDTERGHKLNLSAYVVPLICSTIGNQNTRFAQQSYEHLSGALQTWLNGPQWMLKDIESEGVEGKNNEECPEECITEMKANDRKAFQNTCLLVCTETSYQIQSIIDVRRFSSYQKLITVTSMVLRFIRRVKKAHLRAEENKNSEAEIAEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IM05</accession>
    <name>A0A7D9IM05_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001304</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006145">
        <property type="protein sequence ID" value="CAB4008516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IM05"/>
    <dbReference type="OrthoDB" id="5986911at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043490167" evidence="2">
        <location>
            <begin position="22"/>
            <end position="736"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="138"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="380"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="624"/>
            <end position="662"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="698"/>
            <end position="736"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="154"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="395"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="426"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="642"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="706"/>
            <end position="726"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4008516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="736" mass="82151" checksum="90A28B2901CBC826" modified="2020-12-02" version="1">MAGQCLVKILVCLLVIQCSEGRPTASDDKKVTMSGEPTHFQVDDKAAELEINANAMGVKVNAKPASLQVVSKPGAPAMAVPHPAVYAPPGPYHIAPYYPAPYYPGPVLSTPPMVIGHRRTVRRRHHFFDMDPSLGNWNYKKEKIPGKGTSSKISKKDEHIKQISKKSEINRKSEDSKNSKISKNSKDSQKTEKNSRKRQWIQQVPVLAQVVPYNAAPIRVHPLVQRLLASQAAMRNLVPRPMYGLSQRTFPPWSQRLSYISPGLANGDVRSSIHRAIFLPALPGYQNMRAISPLMTAFNHPWSNPNMLHVPLSGYNGYYDPILTRDFIPDYSNPAFPRVQVPTTRALIPNGIPGGLMYPGYTPLGQLQILSKRLTIPHSSAGEQAKTNAEKSTSEKTTSGVHTSEQITGEKNTIEKANTGKSRSKRSAEGTGKIKETIPHVSNHHGNKAMKRQFILTQPVVQPIQQPVVAYVPVVTNPPVETPTMMSPRNLVLSLPERTPGTFVLNVPSRPQMYTPDHGLNQFYHSRQMNVLPEYQPHYVAMATQRSGIIPRRGVPQGSNRIAQLGELTGIMGTPIIRKGPRLTMFYNDEFPSHVQDEIFRNSPVQGRAMIPGRSSLRRNTLHKHFEDDYETDYPTTDSDYQTESYDNSPSSERIQDDGSYTERVLPDGRTVFRKKHVGFGPITVEANTAESALHRNDDAIDMNLDSDKRKQIPRPENERVMDRRISIPTPAKATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IX15</accession>
    <name>A0A7D9IX15_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nose resistant-to-fluoxetine protein N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061179</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009956">
        <property type="protein sequence ID" value="CAB4018322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IX15"/>
    <dbReference type="OrthoDB" id="207378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006621">
        <property type="entry name" value="Nose-resist-to-fluoxetine_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20146">
        <property type="entry name" value="NRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nose resistant-to-fluoxetine protein N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="50" mass="5480" checksum="CBBDE4581BB3CC84" modified="2020-12-02" version="1" fragment="single">VDASGKPGSGIYGGNTLWYGSYSECKKLPDSRYCWTAFPGKIFLADNKTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IY76</accession>
    <name>A0A7D9IY76_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041783</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009000">
        <property type="protein sequence ID" value="CAB4016168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IY76"/>
    <dbReference type="OrthoDB" id="10063139at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1142"/>
            <end position="1199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1148"/>
            <end position="1163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1199" mass="137011" checksum="7ECE3319F629AC1E" modified="2020-12-02" version="1">MALLIYAGTEVEDLHDTLPEPSRPEGTEEENWTAYEQSKTKLKIHFSPKQCNDFAIFELLRMKIESSESIKSYAMRLRKAASKCDFTNWSAEKIIKSLIISNMQDDTLRLKFLQKDRTLDQVLDIARKKEDAVARSKVIDRDSQQVVNKKGHYASKCFKKQKEAGIKRIEAEPQTDTGNDTNSDTDEYNTAKIELVNNLGMREKPSLMRVRTNDQEVLWQPDTGIQKNVWDEAHFRSFKEKTRGEVKLTPTNIKLFAYGGKTPLVVIGSFKAVLTAGDRTVDTEIYVTSEPSAYPLLSEQSAKQLQLIRRQKITDMIMDNPEVFTGKIGKAKTNEVSLMIDNSVTPVVQKQRRIPVNLSDRAESKIQDLLDQDIIERVPDNQPRSWVSPPVIAPKPDSNDIRFCIDMRMANKAIQRPYTQIPTMADIVNKFQGAERFTKLDLKEAYHQFVLDEQSRKITTFYGPDGLYRYKRLNYGTKSAQDILQLEMHKMLSGIPSQVNIADDILIGGSVEEHDAALQKVRSALTSNGITVNPDKCVFDVEEVRFVGLVFNKQGIKPDPKNVKNLQDASQPTSKVELRSFLGMAGFSERFIPNFASIVHPLRQQLKENIWAWDEKCQEAFTKLQASLSEFSLLHHYVIGHDTELVVDTSITGLGAVLVQRASKTEAFHPVMYKSRSLKEVETRYSATEREALAVRWACRKLRKYLLGAPKFRIVTDHRPLTYMFHKLCRELPPRVENFFMDVQEFEYEIVYRPGKTCIADYNMSRHHVDRAGSSRVFEIEAGAESVVESGCCHALNEQGTVTVEDIRAEGERCEVYQRLVKAIKSGISDNDEDLKPYMVPKIKHDLSVVNGVVCRGSRVVVPIALQKRVVELSHRAHQGISKAKHFLRTFCWFPGMDKAVENQVRGCLPCQAVQPPNNDQPIKPSEQPIGPWQYVEMDFQGPYPNDEYIFIMIDRYSRWPEMAWFRNAPNGNTTIAAMEKIFTNKGVPAVCQSDNGSPIQSKEMEQFAQSSGYRHHHIIPEWPRANGTVERFNRSMKEALQAETMEGKILADVPIYPTLRDRDRIRDQRYKAKMRNGLRPHKLRVGDSVIVKQTKVNKLTPTFNPTPLRITEVQGSRITAREINGTWTITRDASYFRKIASDTRADNEDDQDASDESDGETENENRGNQQETPDESTEKGQRPRRSTRRPSYLEDYET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JA57</accession>
    <name>A0A7D9JA57_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A040533</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013545">
        <property type="protein sequence ID" value="CAB4025327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JA57"/>
    <dbReference type="OrthoDB" id="366390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90257">
        <property type="entry name" value="Myosin rod fragments"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="520"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="8"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="129"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="220"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="432"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="537"/>
            <end position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4025327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="616" mass="72038" checksum="7332138E5803C687" modified="2020-12-02" version="1">MQQNFIKLQKQDDNMRRLHQELAESTRKLSSAEASLEIQLKARGELEKERDHLQQTLRTYEEQMTVKISENKLVNGHASTLQNELEHSRKVSEETSQRLATTAYDLDNLEKMKEENFNNIDSAGLEGDVTKLKVDRVKLEATLQEEKAKTNLLLREIKENNEGRTQLESLLSKIKSSNIDLEEQLRAESFDKSQFAREAEEAKGLWESEVRSRSKLGAKILEMETKLNESKAAIDEEKKRVRKALESRKVMQGKLDVYEKSADQHEKEVQTLKTQIKSYKRRLKDVLNSEKRIPALQAEFNRETQQYEATITSLRNQLRDMNETLRQEGDSRALAERRGQLNEKDLILAKSQAKDSSRQMQKLEKLNRQMADDMDSLKAHYAENFVDKAQLDRMKLDLEAKSRIELNRKLADVNAHLEEQALARDVLERSRDEQEEIKIKELEETILKLRRENEQYRSNFHQLQVQKETIEVEAERFKDMYETETRRKEKLNNLLFQEREKSAESKARFNLERSRSDKILGNGGLSRLEHSPSTLDIPHRENMDHKSPGLIYSQPKEKLMESVDKELSKSIQRHLDSIATNDGPDMWRNNDINMTSSPLSTSSRQYMETLKRNYFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBK8</accession>
    <name>A0A7D9JBK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Epoxide hydrolase 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014022">
        <property type="protein sequence ID" value="CAB4026119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBK8"/>
    <dbReference type="OrthoDB" id="408373at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43329">
        <property type="entry name" value="EPOXIDE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12276" checksum="E3E95C5858E60F0E" modified="2020-12-02" version="1">MSDMDLEAFKFAISQPGALTAALNYYRNIVTLYLDDDWLRDGQTRITSPTLIVWGDQDPFLTKKTLDFIPNFVENSTIRFVGGASHWVQQDEPQIVNDFIREFVQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JH02</accession>
    <name>A0A7D9JH02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082953</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015981">
        <property type="protein sequence ID" value="CAB4029155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JH02"/>
    <dbReference type="OrthoDB" id="5990311at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="28921" checksum="99B23D4CB71D05DD" modified="2020-12-02" version="1">MAFIKKITVCVLILALYAVFFHVEANECYSDYSCPSSQYCCSKKYSFQWNICSYSCVGLSCSYDSNCAPGESCCESNDKCALNCIGESCSYNSDCASGESCCESNDKCALNCIGKFCSYDSDCGSGESCCQSNYKCAFNCIGESCSYDSDCASGESCCHSDGVCKTGGCNKSKGWPGWLFAIIIITTVGSFILFLACVIYRRCYAPSRRRALGGVIVVQPMNTGATVFAPQQKHYGIQQQGQPMFQCSQPQGTAWPPPGRHATTPTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JH97</accession>
    <name>A0A7D9JH97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044671</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016395">
        <property type="protein sequence ID" value="CAB4029769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JH97"/>
    <dbReference type="OrthoDB" id="2281581at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="269"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="269"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="676" mass="75407" checksum="FBCF5AAFE27F19EB" modified="2020-12-02" version="1">MELLSKLNDNICALGVSLNKRKHESIVSDQPSTNTAVSAKKAKISSLSESVSDNESDSEALLGDAEQGHHNGNENTSNEGEQQSANMADVDDPLLDEIAQSLDETERTGDPVSDKLALIANKRWNHKLSDDQLKEKDEKYPRPANCDKVVSLRVNPEIWAKLPRAVRGEDNKLFRVQTQLSTVTNLVVQATDMLLKAKSDPKSLQIDDLVRMNTDAVALVSHASHELAQKRREIIKPHLHRDYIELCSKEVPVTSLLFGDDLQTESTRIRATNKIGNTTNPSSHQPSQRRIYKPNTSNYSNKQPLFYGEEPSRTDDWRTTNGGVSEYESLVPSLIKYFEHKVANFKAGQLSTSYFAWKELTSDPEILETVSGEKTQKIKEACQKLLQSPQPTIREVARVIGMLTASFPGVMFGPLHYRHLDMDKIVALKLRKGNYNKTMTLSDEAKHELSWCVRSIESAYSVVSHGQADTTMTTDASKTGWGCSLAGTPTGGSWDPGESEKHINWLEVKAILLSLKSFVAHICQKHVKILSDNTTAVCCINHTGTSHSKEINLLVTEIWDFCIENTIWITVAHIPGKHNVIADFESRRGTNDTEWALDQTVYDQAIQLLDHTNNTDVTIPSSENTSSTKEVAITDVPLIGGLLESKGMSKEAASIIVQAWRPGTQKQYKYYLQKWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JR27</accession>
    <name>A0A7D9JR27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GRIP and coiled-coil domain-containing 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A021762</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019777">
        <property type="protein sequence ID" value="CAB4034057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JR27"/>
    <dbReference type="OrthoDB" id="1926336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051841">
        <property type="entry name" value="MT-Golgi_org_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18902:SF25">
        <property type="entry name" value="GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18902">
        <property type="entry name" value="NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="233"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="233"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="259"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="283"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="295"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4034057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="339" mass="39314" checksum="150773465E057DC7" modified="2020-12-02" version="1" fragment="single">ENESQIVQKNIQEELETKTHENENIKVQLSVIHAEKQTLEQQLHSVIENNKINLENLDAKLNRVKSECEALKQAKDALQSEYENYKTRVHSVLKQQKAKPSTPVANMEADERSQLQQNVLQLKIKLQETSEKLRSLQSDYEDLENENERLTTVHSQLSVDSEKKERFWKDRIEKVSQEYTTNLEQHKETIEHLTVKNETLAKTYKDKIQKMEEEHKSKLEKLRIEIDDLEKERQKQISKDKSRSRESPPLKLNLGGETVHLRSEERQAGEGMENTELEQANVPSQPTTPTSATSFHSVSLETLLSPTKGEELPSLSESEFTQEEVITARREIEHLSEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JS76</accession>
    <name>A0A7D9JS76_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001998</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020284">
        <property type="protein sequence ID" value="CAB4034632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JS76"/>
    <dbReference type="OrthoDB" id="7698392at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="402" mass="44554" checksum="F66B977A6C05FA43" modified="2020-12-02" version="1" fragment="single">LVIHPDKSVTSPSQEVIILGFVINSITMTIRVTNAKKERIKTFLIAAIENPIDISIRQVAKIIGYLVSTLPGVQYGALYYRYLEMDKVSALKISKGNFDAPMTISKDGLVELRWWVNHIDESFNYLMIPPIDITIYSDASLQGWGAVLGDTSSGGRWSPDECTNHINYLELLAAFFALKSFCTTIQGKHVKLMIDNTTAVAVINNMGSCHSRACHSVGCQIWQFCVEYNIWLTAAHIPGAKNVLADKKSRHFQSQTLKQCREENNSGACPGNFSCPRLAHPALVSTVGPASCSTSSGSGTQSHTADPLSLSENNSSPLQKAETFSMSCLRQQLLRGYSLRSIEIIESSWRDSTKSQYQVHLQKWLQFCMERDCDFISPNLPQALDFLSSLFDSALSYSSLNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K190</accession>
    <name>A0A7D9K190_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">HEG-like 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A038668</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024934">
        <property type="protein sequence ID" value="CAB4039084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K190"/>
    <dbReference type="OrthoDB" id="5971017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="11"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="42"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4039084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="455" mass="50683" checksum="DEB2182499D4E572" modified="2020-12-02" version="1">MGGNVSPGDPGTSQKGQDTCTSQDEQIARQLQQEWNEDIELASTSSSHQGNDSDSTLHVTSTLIKDKQDVIYALSSQVEGNDQFFIATRRKAPLSRIFSLWQRQTKKKSPTCRIMVKYSGEAGIDSGAIAKEFLEDTIENIAATLFKDGVPVNSTHHVQNGDFRTCGEMAAASLAQGGPPPCFLDECAYNSIFTETDLTNVDEKDLAEKEKVTLANITLDCTKHSDFIIEHGYTGVVDQKFIQDIINSLKVRFVSDRMLYMQEFKKGLDVYGLGDMIETNPDACRPLFVKDFKKDLVPDADYLFSLMEPIFSEEGSTKRVIEESIMDYIQDVLIALDDTPVSGYPAAVAWNRDESENDVPTSEELFETAEMSVGGVMGWLTGQRHKHVTSKEMPTIGIKFDHECLLRNPNHKVCFPLIGACGRELTIPVVHMDKAEKFKELFILAYCKGQPFAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K7P9</accession>
    <name>A0A7D9K7P9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080371</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028741">
        <property type="protein sequence ID" value="CAB4041678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K7P9"/>
    <dbReference type="OrthoDB" id="6143850at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="435"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="601"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="436"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="472"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="607"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="627"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="627" mass="70012" checksum="1A27E73B0D7D95F7" modified="2020-12-02" version="1" fragment="single">MPKHKCPFPECTYKTEDISDELAVVMITIHNTGAHTNTPAPTQLTQACKVERVKRPNVCAGGSSEEWSYFITRWQEYAEATKIQGKEKVIQLLECCDENLRKDMTRNEGGSLVDKTADEVMAAIKKLAVRAENIMVARVELHNMQQDRDEPIRHFEARLRGQANICKFTIPCPTCNVDLNYTEQILRDIVTRGLADHEIQLDLLGDKNQDMSLEEVIQFIEAKEAGKRSAGRLQEAQSLNATRKTVCLQKTKPKPPLPQKANNDQEGAIFDSLCSTSCGISIDHHLYNQLNDCWVRQSSKPQPFITLATTVCPEDYKTFGMTPPEIPRRRLQIPVMADTGCQSCLASMKIIERFGLQQKDLIPVTMRMVAANNKGINILGATILRFSGRSKSGATLETRQITYVTSDSERLFLSREACVAFGMISETFPTVGEASPLTTLPLSDASPGNTNTTPKQTPQSALTAPCNCPLRQKPPPRPTQPPFPANNANRAHLQQWFLDYYAASTFNTCEHQPLPLMHGPPMRLMVNPDATPVAHHTPIPVPLHWQEDVKAGLDRDVALGVLEPVPIGEPVTWCHRMVVCAKKNGQPRRTVDLQALNLHATRETHHTQSPFHQARSVPTNKKKTIFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KDV6</accession>
    <name>A0A7D9KDV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006081</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034463">
        <property type="protein sequence ID" value="CAB4044287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KDV6"/>
    <dbReference type="OrthoDB" id="5983633at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="14812" checksum="87EA729F1F4ACBEB" modified="2020-12-02" version="1" fragment="single">TMIGGICGSDSRDKKEEVTVIPLVSCSRDIAKHLGSLTSLAFSGPRNEVDLILFRTAIFKIPQDINDMTICPFHRGKLGLGWTRGASIRCRVLPVLSQHGNKNKKSWPKGERGLGIYDFLHMLRKTGVFIQCGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L295</accession>
    <name>A0A7D9L295_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tyrosine- kinase receptor Tie-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004658</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012923">
        <property type="protein sequence ID" value="CAB4024252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L295"/>
    <dbReference type="OrthoDB" id="5961875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007169">
        <property type="term" value="P:cell surface receptor protein tyrosine kinase signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050122">
        <property type="entry name" value="RTK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416:SF622">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00109">
        <property type="entry name" value="TYRKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="188"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="46332" checksum="72353821DA574932" modified="2020-12-02" version="1" fragment="single">QNNHHFDHSNNSNPLLKTLLRTQQCLAKPELSLFSTKLTCKSLSCFILLDSISKLNKDFPSVSQFRRYKSIVIKEDIVISDDDDEPVCFGLEERFGMVHSNCYFYRAVGYVSLQSILFFFISITSFLFLVLLIVSYYHKTFCIFKLMFEPKNCFDPFFKLRKKLPPLAKIFWKNMAPGPRNSLIGPGYYVFKDMNFENKSTRFRVSSTTRSIRVDLESPDYKESRYILKILYRVSQKKRKLLKSLIVKFECPTKQLDFKYNRSSKIKLFSAEKLHVVIEFCPGGNLRNFLLNSRVYPSTENSSNYINMTSTLNHRQLLKIAVDISNGMAHISSQKFVHRDLAARNILIGEGNMAKVSDFGLARDISAAEEYIRNNQNLLPVKWMALENLLHGRFTTASDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LCS3</accession>
    <name>A0A7D9LCS3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015164">
        <property type="protein sequence ID" value="CAB4027981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LCS3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12458" checksum="3AD9C76F1738D917" modified="2020-12-02" version="1" fragment="single">VYPLIKDYILSEATYDFQIHCAMDCLQDPFCTGYNFKKKHQKKTPNCQLTHTLGHNFHDCNADDKGWIFYHPVAPRKVPCHKMKNCKNGGKKIIYLKDGPGSDRSLQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LDH2</accession>
    <name>A0A7D9LDH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A072009</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017045">
        <property type="protein sequence ID" value="CAB4030663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LDH2"/>
    <dbReference type="OrthoDB" id="5982876at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="162"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="212"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="214"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4030663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="511" mass="57805" checksum="37621778F80D8B20" modified="2020-12-02" version="1" fragment="single">MATTSGSAVAKFSRYYGRSCVAGTHSGASCTNTQYTEGVSMHCFPDKEKYPKQHREWLRFVRRHRPGFVPSKHSPLCSIHFEDSCYVTRRDIAKDLGIRVVLKPDAVPTIDAAIKAEERTATIRERKQVMRSLVQEETSSAVTSQAKSEAVEVEGEATQEVHEHVASKPQETVENPVEEKKEQIKSLKKKIHSMQKENWALRKQKRSLQTAFNKAKEMEDQPSTSKKDELSTEAEPYLEDFNVEEPTDASTEDTDWSSMESYHLSADDSEDIDDNGDNVDMTRNTVSVDPNTEPQDEPKFTVFFGMLLCLFSMFCFKCKSKNPSATVKRIGTMATVANQTGNSNAMELAGAKSYFKYLQNLGIKVSTFVSDRHKGIAKWIRESQPDTRHFNDLWHVVKGITKKLIKAGKEKGNEKLLVWVKAIRTHLYWCALSTKQGFGDLIIAKWKSVIRHIANLHTNHPDSLYANCSHGPLEPRDWIKQGDHVTVDNNSLFCSSSFDEKNSVRYHAALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LDX6</accession>
    <name>A0A7D9LDX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">P2X receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A067654</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the P2X receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015581">
        <property type="protein sequence ID" value="CAB4028585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LDX6"/>
    <dbReference type="OrthoDB" id="494673at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070588">
        <property type="term" value="P:calcium ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.940">
        <property type="entry name" value="atp-gated p2x4 ion channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059116">
        <property type="entry name" value="P2X_receptor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10125">
        <property type="entry name" value="P2X PURINOCEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10125:SF31">
        <property type="entry name" value="P2X RECEPTOR E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00864">
        <property type="entry name" value="P2X_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0407">Ion channel</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8" id="KW-1071">Ligand-gated ion channel</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4028585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9990" checksum="3F45AAFE315B5ACB" modified="2020-12-02" version="1">MKENSLEPKSRVLRKRYGIKIEFHQAGMLGKFSLASLVIKLVSGMGLLTLTATIVDTLALYVLPDRFRYRSYVYETSPVHEKEIKQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LKG1</accession>
    <name>A0A7D9LKG1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018186">
        <property type="protein sequence ID" value="CAB4032172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LKG1"/>
    <dbReference type="OrthoDB" id="6098717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="214"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="228"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="262"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="273" mass="30890" checksum="1C04C43C4D8418B9" modified="2020-12-02" version="1">MGATPVVVNNDNNSNGGDVTGSPNQRDDPLLEEIAQAMNEAEKSVPKIAEQLAKIINSRWLNKLSDESLREKLDTHLRPVNCDRLITPKVNPEIWGRLDKETRSKDLKLSYLQTNLAAVGNIVSQATDMLLTARAENSEVHIENLIRKNMDAIAIMGHISYDLAQRRRDVIRPTLNKEYATLCASDVPVTTLLFGDELQTQLNHIRASNKIKNTASGSQYYPPRRHFSPQQVPARSGQQKPFLWKQPPQGGKPQYRRKYKQYRSNQPGNQENQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LL71</accession>
    <name>A0A7D9LL71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Tonsoku isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A054032</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021179">
        <property type="protein sequence ID" value="CAB4035582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LL71"/>
    <dbReference type="OrthoDB" id="5806726at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043596">
        <property type="term" value="C:nuclear replication fork"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031297">
        <property type="term" value="P:replication fork processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052311">
        <property type="entry name" value="MMS22L-TONSL_complex_comp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46358">
        <property type="entry name" value="TONSOKU-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46358:SF1">
        <property type="entry name" value="TONSOKU-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4035582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="33681" checksum="1F602CF3BD9295D6" modified="2020-12-02" version="1" fragment="single">PLLNWFADYLRDRKQCVVVEGASSSFLNVTSGVPQALEKQKQRAKKAKNVAGKANLCNHAGVKLAEHRLFEKAIEEHRMELQLSESLNDTIAVAIAHRKLGECLCEQQDFKQALFHQRKHLELSRECQNIVEEQRALATVGRTLFVSAVSFSELFEAKSVFLESLSICDQLKDIVEEKELLEMRARLYLNLGSVYANLKNPKKAVRYIEEALVITVKHSLKETEYRCHFSRGEIKLAENHPAEALQCFERARKAAQHQGMKFEEADTLVKWDRSFFGWVTSKELKTFLKSVSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LPN2</accession>
    <name>A0A7D9LPN2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064359</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022500">
        <property type="protein sequence ID" value="CAB4036868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LPN2"/>
    <dbReference type="OrthoDB" id="5985115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025048">
        <property type="entry name" value="DUF3987"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13148">
        <property type="entry name" value="DUF3987"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="37552" checksum="4863F723EC72220D" modified="2020-12-02" version="1" fragment="single">MAWNNGHTIEQNLQRCYELDFDWDLIPHKLQHVCEIFGKRMKQQKTTVLFALLTAVSFVLGHASVTVKDGWEEPVVVWLAVVLKTGRCKSALHHFLENLIEKVHNNVPSATKGENGISLSPGTMLLPHCTWEKFGDILANNGGRIYGLFDELVSFFSTMNMYSSSKSTVQDNREYQDFLKMFTGKAKNRETITGNANFNMRQTSFTLLGFTQPQTALPIIHNAKGFTSRILWYFPNPIFRRLADSELTEDEKDACEQWEQNLVEFLTNLYIDGEKTFSKTEVGKIVDVKVEREQYIFSPEAKSLFAQIHDNWEMNVCKKFQSDVLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQV2</accession>
    <name>A0A7D9LQV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Probable serine threonine- kinase DDB_G0271682</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A074017</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023042">
        <property type="protein sequence ID" value="CAB4037398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQV2"/>
    <dbReference type="OrthoDB" id="5961232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097527">
        <property type="term" value="P:necroptotic signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051681">
        <property type="entry name" value="Ser/Thr_Kinases-Pseudokinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329:SF298">
        <property type="entry name" value="MIXED LINEAGE KINASE DOMAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="76"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="106"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="142"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="267"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="17"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="272"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4037398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="643" mass="74462" checksum="77DACAE650B7D830" modified="2020-12-02" version="1" fragment="single">FKRHEENAEQGRESSGRKSSGRGVSEKILTAVQRSAKDGESEPNTSTNESRLYCFVVTTLKFVLGTLKSVLAILKWFVFATLNFVFATLKFVFATLKWFVFAPLKFVLATLKFVLATLKFVFAAIKWFVFAPLKFVLATLKFVLATLKFIFATLKWFAFIPLKLVLAIYGDQHKEDNNNMRNEIKELRQENSKMHNKNQQLRQEKNQLDNENQQFRQEKGQLENENQQLRQEKNQLDNENQQLRQDKNQLDNENQQLRQDKNQLDNENQQFQQEKGQLQNENQQLEQEKSQLENENQSLRQDKNQLEIENQQLEQEKSQLENENQQLRQKTDDIINEMQETRQENNNMEIEIQQYREDTMSSIFSESGSVVISNEELGRGAWGAVYTGDFYGTKVAVKEYYEIILSPHNLQILQREINIASQCRHPNLLQFICATKNHQNRLLIVTELMDMALRTLVEQRATERSQLEDQKVESISLDVARGLNYLHSKTPNRIIHRDVSSANVLLWIENGAVRRAKISDYGSANFMEVSKTANPGSALYAAPEANREKQDPKIDVFSYGFLVCEMSVCELPHPEQIKRKGQIKDSECWYQKIGGTLYGNRTAKKANNAGCNWILVKLKQDLTIPVLTLHQYSSLVSLLTFIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LT21</accession>
    <name>A0A7D9LT21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Striatin-3-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024425">
        <property type="protein sequence ID" value="CAB4038642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LT21"/>
    <dbReference type="OrthoDB" id="727118at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051488">
        <property type="entry name" value="WD_repeat_striatin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15653:SF0">
        <property type="entry name" value="CONNECTOR OF KINASE TO AP-1, ISOFORM E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15653">
        <property type="entry name" value="STRIATIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="39722" checksum="A3E2AC59DDF3D601" modified="2020-12-02" version="1" fragment="single">MITHINFVIQGPPRGALQAMLANLNGEDDAVPAQPPGIVGPLPIKMSGGRALAEVPPIGNITIERNAIPPANNDVNEAMPGGNAVRDNVDDGLGLGDLAGITVSNEADPLSYDVSNKDEIRRTWNPKFTLRSHFDTVRAICFHPFETAVLTGSEDHTVKLWNLNKTLPTRKGNAVEIEPIHSFRGHSGAILSIEVNPSGDTCYTASADGTIRCWNLPSLEIDPYGQFDADTVGNVLMGHTNAVWDLAVHYQQNYLLSCSADGTCRIWNPTIKVPLVNTYPATKDQGIPTSIDFVRNEPNQFVVSTTTSMCSIIDTETGAEVVALESNRTYDNTPATQINKVACHPTMGVTVTAHEDRYIRFFDNNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVV9</accession>
    <name>A0A7D9LVV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038244</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023717">
        <property type="protein sequence ID" value="CAB4038023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVV9"/>
    <dbReference type="OrthoDB" id="10577717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="75"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="98"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="35204" checksum="39211FA74F590404" modified="2020-12-02" version="1">MYDFFILRGIESRRKASWECCSNHVKDNGRPHPTITSTHTNNTNNNINNVNTSNNNDDDNNAYNLTKPTDTTLIINNTNNNTTNVNTSNANDDDNNADEGNANNDSDSNFIDNQHNEDIVNNTNHNNDKGHGINTPSNDTNVQITITTTTATTSDSVQEPIMKRPRSSTCTQGTTQRVVIDEGSKLMVLDKDKKAQALCTLFSMKTLHNHVLPKGHVGIAIYYVVPDCTLKPVCPTEFDGDVIEKGGYYIWPIELLASHEKLLNVTGAEKYSNTHYSNYTAFPSTVLSIEASLTCNSFKFFSWTSVLAKESELVSRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M1W4</accession>
    <name>A0A7D9M1W4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015678</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029645">
        <property type="protein sequence ID" value="CAB4042193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M1W4"/>
    <dbReference type="OrthoDB" id="10056483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25584" checksum="80BC0BC2AF2D08ED" modified="2020-12-02" version="1" fragment="single">MVLNWFRDYLNNRTQRVVMEGVFSGWTHVTSGVLQGSILGPLLFVIFINDLPNAVPQTTKVALCADDTKSFRGITFEGDSCDLQQALSNLSTWSSNNNISFNESKCKSMTVTRKKQPIPFIYHLDLFPINKVQEEKDLGVLMTSSLSWDSHIQRISAKANRMVGLLKRTCPLLTQVHVRRTLYLALVKSQVCYASEVWSPHQSNLKIKLEQIQRRATRWILKVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M7H1</accession>
    <name>A0A7D9M7H1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A023181</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030827">
        <property type="protein sequence ID" value="CAB4042790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M7H1"/>
    <dbReference type="OrthoDB" id="413361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF28">
        <property type="entry name" value="TRANSPOSON-ENCODED PROTEIN WITH RIBONUCLEASE H-LIKE AND RETROVIRUS ZINC FINGER-LIKE DOMAINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="81"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="84"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="576" mass="65622" checksum="C66903EBE397A3BB" modified="2020-12-02" version="1">MRQLSRLQLGEDEKLHEYFVRSQDLMSRLSEAGEKISETLFNALIINGLPDKYEHFVVQESFNPASTLSELRTRLQNYEDSRIQRNQTEDNSSVAMHSSNRQARNKSSTPQTKNCYVCGNPGHSAKQCNKRSSATCSICKKRGHLAKACRSAGKTEKSQGKEPPAVSSYSNCFVSPLQEENNGSEYLNYLIVDTGCTDHIINQNNVFQNLRPCNEKSVGDPKGNLTPVEGIGDVPITVQSKHGKMAEMVLRNVLYVPSYEVSKGDIKGDIGLWHKRLGHLNKVDVERTIGCKNNSKDVCETCAMGKQASKPVQKEVQTKAQKALELVYSDILGPFEVASLNGSKYAVTFIDEYTKYSVVKYMSKKSQVLYKFKEYAAEAGTPQRLRTDNGAEYTAKQFKDYCRDSKIKQEFTVPETPHQNVVAERFNRTLVEMEQCLFIEAKLPELLVSINSNQNRSPFELFTGKAPRRIRLRVFGCTAYVRKRKVNLRKLDSRSVKAKFLGYDDKSIAYILQEFSTKKIIKTCNVLFKEDEIQSFSAKDQKSHFWKVQTLILTMNVQMIKPPRNRLKIKWRKVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MDS7</accession>
    <name>A0A7D9MDS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063096</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038871">
        <property type="protein sequence ID" value="CAB4045338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MDS7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="96"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="119"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14704" checksum="29FC6299072A8BF2" modified="2020-12-02" version="1" fragment="single">HWKVCCENRSKTSRHDRSGQTSIIACFEKQAKDKEQSSHSECDPLSNNENDFDLENPGSAINLDNIECSDDFCDVPDLELYLCNNDQEILEIEVDITPETDDYDDSYSSSFDETDDGKDEFRNNKFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FM36</accession>
    <name>A0A6S7FM36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-oxoprolinase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088727</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000127">
        <property type="protein sequence ID" value="CAB3978597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FM36"/>
    <dbReference type="OrthoDB" id="3643at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017168">
        <property type="term" value="F:5-oxoprolinase (ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008040">
        <property type="entry name" value="Hydant_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365:SF2">
        <property type="entry name" value="5-OXOPROLINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="5-OXOPROLINASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05378">
        <property type="entry name" value="Hydant_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydantoinase/oxoprolinase N-terminal" evidence="1">
        <location>
            <begin position="11"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13609" checksum="540E03A5A23A9524" modified="2020-12-02" version="1" fragment="single">MDSKLLKGFSFAIDRGGTFTDVFAKTPTGKSIVMKLLSEDPANYPDAPREGIRRILEKETGISMPASEPIDPSYIKWIRMGTTVATNALLERKGERMALVINKGFKDLLYIGNQSRPQIFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNJ4</accession>
    <name>A0A6S7FNJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A011826</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000373">
        <property type="protein sequence ID" value="CAB3981295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNJ4"/>
    <dbReference type="OrthoDB" id="2021138at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4080.10">
        <property type="entry name" value="ADP-ribosylation/Crystallin J1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050792">
        <property type="entry name" value="ADP-ribosylglycohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005502">
        <property type="entry name" value="Ribosyl_crysJ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036705">
        <property type="entry name" value="Ribosyl_crysJ1_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16222">
        <property type="entry name" value="ADP-RIBOSYLGLYCOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16222:SF40">
        <property type="entry name" value="ADP-RIBOSYLGLYCOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03747">
        <property type="entry name" value="ADP_ribosyl_GH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101478">
        <property type="entry name" value="ADP-ribosylglycohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="29"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="76"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="124"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="529"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="531"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="532"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR605502-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="579" mass="63937" checksum="D45F216128BCA40D" modified="2020-12-02" version="1">MEDNNAKEIPAKPTSAILPAPKKDKKSETTSQDTPEVDSRSSLTDSDVKLEGVLSTTVTDKPQSDNELPKKDKKSGTTSQDTPEVDSRSSLTDSDVKLEGVLSTTITDKPQSDDELPKKDKKSGTTSQHTPEVDSRSSLTDSDVKLEGTLSTTDKPQSDDHQLKEAMALSLSDTSHDGVKLEDAAAVTTTDKPRCDDGDTLQATIVSVTNTDQTGGGAKLEGATALSARDEPRCDDKKLVDQIKGVLYGNCIGDAIGLLTEFMDKNEAQKHYGGKRVMKLFYRKDLEYNQKVADLHRCNWKEGDWTDDSDQMILILRTLVQNGGKFVEKDFAKKLRHWVRHGYEELGDTRGCGLGRTTASVLSHRDFLENPHKAAKDVWEGSGRYIAPNGGVMRTSVLGTMEFRDLDKVIENTRSACMVTHADPRCIASCVAVTIAIALMLQRKHNKGKHDIDAIMSTAHWYAEQELKETPQYKDELKHHMFAESLDKLELDSPQAIGYTFKCMGAGFWAFRQKDFREAIQAITMEAGDADTNCAVAGALLGCKVGFHKLPKSWVNGLCNRGWLDKEIKSYFTLLGLQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPA1</accession>
    <name>A0A6S7FPA1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">UDP-glucuronosyltransferase</fullName>
            <ecNumber evidence="5">2.4.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A013488</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>glucuronate acceptor + UDP-alpha-D-glucuronate = acceptor beta-D-glucuronoside + UDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21032"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58052"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:132367"/>
            <dbReference type="ChEBI" id="CHEBI:132368"/>
            <dbReference type="EC" id="2.4.1.17"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Membrane</location>
            <topology evidence="5">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the UDP-glycosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.17" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020000398">
        <property type="protein sequence ID" value="CAB3981525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPA1"/>
    <dbReference type="OrthoDB" id="5835829at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015020">
        <property type="term" value="F:glucuronosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd03784">
        <property type="entry name" value="GT1_Gtf-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000021">
        <property type="entry name" value="UDP-glucuronosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050271">
        <property type="entry name" value="UDP-glycosyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002213">
        <property type="entry name" value="UDP_glucos_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035595">
        <property type="entry name" value="UDP_glycos_trans_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48043">
        <property type="entry name" value="EG:EG0003.4 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48043:SF145">
        <property type="entry name" value="FI06409P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00201">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00375">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="449"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3981525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="485" mass="55344" checksum="9BF516FBE7F7BF85" modified="2020-12-02" version="1">MPYYSHLSGPANVGKFLQSQGHDVRIAIPPQMKEKMEKHGVQLLLFNGLGEFPEDQYLQDLIMKLYFEGAPSQQSELYEKDNVAVVTVTNTATKIVKDITLRKNIEKFKPDLIILDSNPVTIMLTLIPYKLDIPFIMMGSLASPQCKRTPILPTVFPMKFLPFTDQMTFQQRLLNTFVELLSYRQNPFIDSSLIEEYVPEKPRISLIDLQAKAQLWITRQHSVLDYNHPTMPNEKTVAHLQNLTSKALPPEFQSFIESADNGVVIVSFGSILNLPSQVKEKLLSAFQQTKYKFIMRTDEQHNNQSDKFMFRKWLPQFDLLRHHKTKLFISHCGSNGLQEALFAGVPILGCPIVGDQPNNAGKIVRKGYGLKLDLKSFSVQELVSAINEVTTNPKYKANVEKASAILKSERVPPIEEAAFWINHVLKFGGAHLRSYAQDIPLWKYLGLDIIAFCLLIWHVFVFLIIITLKYCLSRCCVSKQKLKDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUS0</accession>
    <name>A0A6S7FUS0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A073466</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000349">
        <property type="protein sequence ID" value="CAB3981073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUS0"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="402"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="494" mass="55875" checksum="5E532C45EEED553C" modified="2020-12-02" version="1">MDVFATRVRTLSKTCVFGEQTDEGIRDRATDKCVSKELRRRLLREPDIDLSKLLTISRAFEQSHFQAQEMEQPFTQPSDSINAIRPRYNTENSDGSRRETPSHINNTGASRGASNSSPYNQSKQEFARWLSQPCYCCGNTGHRAKDVRCPANEKHVEVATKLVILPRYGRSRPKPANYTSPPQNQALQVSEQNNVTSYSDDDECIFRVQQFPNLPTTNINVDGLSVPVVIDSGATVNIADIDTYYKLRTLRKVEIMPSNIRLFTYGSTIPLNILGTITVKVERNGKQILAQFVVVNNRGTGCLLGHKSATELDLLHVGNSVSIQSEEISAKFPKVFEGVGKLEDFQQTIHVDPKIHPVAQAPRRVPFHVRRKVEAKLDELQRLDIIEPLTGPTPWVSPLVVVPKPNGEVRICVDMRRVNTAVIRERYPIPTVEEILQDLTDACVFSKLDLRWGYHQIELDEQSRHYTTFLHTPVSIATSALCLVFLRHQKYTNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVJ8</accession>
    <name>A0A6S7FVJ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028501</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000390">
        <property type="protein sequence ID" value="CAB3981433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVJ8"/>
    <dbReference type="OrthoDB" id="10620909at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11535" checksum="2A440FC84359C3F6" modified="2020-12-02" version="1" fragment="single">MKRSAIVSGSTPGKPAVKTNKRQGEPSSRKSLFDFKTEKKDNINQPDQWSIEERKALVEYVALFTPVSQDQAFPGRRPKKQNFGISVLMPFHTQQESRKDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2X6</accession>
    <name>A0A6S7G2X6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053994</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001156">
        <property type="protein sequence ID" value="CAB3987324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2X6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="344" mass="37154" checksum="93E85E51848EF940" modified="2020-12-02" version="1">MASYEGRKSPTSEQEVYGDISEEDVAEYNDEGTQENDDGQMMNIEFDLVSENSVMTVHDGEVNECPAQEDNHMMVTESSLATENNVVMHNPVSEIHVDPPSQQNDDGEMMVAESTLAGENNVVKNEPVSEIHDGPPLQENSDGEMIVAESTLAGENNVVKNEPVSEIHDGPPLQENDDGEMMVTESSLAAKNNVVKNEPVIEIHDGPSLQENDDGETMVAETSLAAKNVVKNEPVSEIHDGPPLQENDDGEMMVAESSLAGENHVIVHDPGIEIHDGPPLQESDGVQSVQIGASPEIMVYDPDAGPALEDELGGIIIEEQSDENEQVELLVMSLDTIPAIVVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBG1</accession>
    <name>A0A6S7GBG1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000933">
        <property type="protein sequence ID" value="CAB3985876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBG1"/>
    <dbReference type="OrthoDB" id="2344127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="23440" checksum="8CEAE25E1192333A" modified="2020-12-02" version="1">MAVENVLVQFKERFGRYPKTAQFDDGKEFYNVGVKTLLKDHDVHYFSTRTFRKAALVERFNRTLKTRMWKYFTKNRTKVWVNILPALVRSYNNSTHRTIGMKPADVNEENKDEVWTRIYGYPRSSFPDPNFKVGDHVRVEIKHKTFEKGYEPNFDNEVYVVTAVFRGDPNMYSLKDPEDILGRYYEQELSLDLNKDGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKP3</accession>
    <name>A0A6S7GKP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002002">
        <property type="protein sequence ID" value="CAB3992215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKP3"/>
    <dbReference type="OrthoDB" id="5987807at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22758">
        <property type="entry name" value="OTU_232R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003323">
        <property type="entry name" value="OTU_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050704">
        <property type="entry name" value="Peptidase_C85-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12419">
        <property type="entry name" value="OTU DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12419:SF11">
        <property type="entry name" value="OTU DOMAIN-CONTAINING PROTEIN DDB_G0284757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02338">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50802">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="35601" checksum="2046D0DC2AC44328" modified="2020-12-02" version="1">MKNRKCRQKVKQFLKHSTPTSSVLNHIATNYKEYYLKFIHKHKFLSQSFAALKHIHKAKKRICTSHHLTTTCVLNSSTILKNAIFDNDKFCMSDKKLMMSGDIELNPGPLTNVSSKVKASLPAYNIVENRLEQLGLRPLDVGGEGDCFFRAISHQLYSDCNHHLDIRIAGGNYLRENPERFIESNIESSWMQYLENMSTPGTWCDNLVIQAVADILNLKIHIIESDENFALFNIIEAVAPQHQPTVVHIGHLGEYHYVSTISLQLGSTVSNVGKSNDKQKQKRKIYLKEYMKEYMKKKRSSETSQEKEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GL08</accession>
    <name>A0A6S7GL08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030345</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000888">
        <property type="protein sequence ID" value="CAB3985580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GL08"/>
    <dbReference type="OrthoDB" id="8300196at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="25454" checksum="65E7E0D5E7560188" modified="2020-12-02" version="1">MEQLRYEVLQEFKKGNFVVKWKESAFNEVSADHSLEWLNGILVNEEVELWALPYNLRWEIAERTHEMFGLVQEDTYSHNESAPARIVRDNKDEESLISVLEQHHVFSPTSHPECLFSIATKGLATVEIQESLLGAKDMGQKQVKDFVQQWLTEPLQQQPNNEQGDTKVQFTDTMHENNALLSIRCIKSPKGAKRKKRTRFYALTGVFYSVLSLLTELVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GPG0</accession>
    <name>A0A6S7GPG0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Carboxylic ester hydrolase</fullName>
            <ecNumber evidence="4">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A031123</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the type-B carboxylesterase/lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020002660">
        <property type="protein sequence ID" value="CAB3995414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GPG0"/>
    <dbReference type="OrthoDB" id="19653at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052689">
        <property type="term" value="F:carboxylic ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050654">
        <property type="entry name" value="AChE-related_enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002018">
        <property type="entry name" value="CarbesteraseB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019826">
        <property type="entry name" value="Carboxylesterase_B_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43918">
        <property type="entry name" value="ACETYLCHOLINESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43918:SF4">
        <property type="entry name" value="CARBOXYLIC ESTER HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00135">
        <property type="entry name" value="COesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00122">
        <property type="entry name" value="CARBOXYLESTERASE_B_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0719">Serine esterase</keyword>
    <feature type="domain" description="Carboxylesterase type B" evidence="5">
        <location>
            <begin position="1"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3995414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="23336" checksum="90A454244738FAFB" modified="2020-12-02" version="1">MKWVKDNIAYFGGNSKSITLFGESAGGASVSAHTLSKGSWELFDRAILQSGNMLMPWAIMTNSQIKGGLKWFLGKVNCDNDENLLECLRNVTEDKLKSVANSKEFWSIWIGPNVDREFISDKPQKIWEDGDVKNQEIIIGVTKDEMFMVLQNELLKSTNISYYLKYFEKLLKKHFNNSSKAVYEKARELYNYRNAFLLIWKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GR24</accession>
    <name>A0A6S7GR24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001395">
        <property type="protein sequence ID" value="CAB3988857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GR24"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17781" checksum="91B73658BF958DB4" modified="2020-12-02" version="1">MTVHKSQGKTLDAVEVHCGKEFAPCQLLRVRKLSQLRLVGFDSKTLIPIPNEVLTFLDNIQNSPADQEHKCCHIKPQLLNDNNNSDVDNFSEEEFAEEKLRELDDIAKSYFASIVQPDTVDLSELFEKLSSSTNFENIPNDFNFVEFMSTLKKADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSY0</accession>
    <name>A0A6S7GSY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078270</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002144">
        <property type="protein sequence ID" value="CAB3992886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSY0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="77" mass="8536" checksum="15582054270EBC8D" modified="2020-12-02" version="1" fragment="single">MKEILTSYGDFKADYVYGPAPPKPNTWLLNDLKQKKANCIITNDQETRDEEDGNEIPSGVPDDVPKIVAAQCGEIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTX2</accession>
    <name>A0A6S7GTX2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Carbonyl reductase [NADPH] 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A048802</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002967">
        <property type="protein sequence ID" value="CAB3996874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTX2"/>
    <dbReference type="OrthoDB" id="7289984at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43963">
        <property type="entry name" value="CARBONYL REDUCTASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43963:SF6">
        <property type="entry name" value="CHAIN DEHYDROGENASE FAMILY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G15350)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="105"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="134"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3996874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="43376" checksum="C46EE092A819C920" modified="2020-12-02" version="1">MSYGFQPFQTQNRSRVAVVTGGNKGVGYSVVKKLLKKFRGVVYLTARHEEKGLAACEHLKKEGLHAPKFYQLDITNREQIMEFRQHLQKTYGGIDILVNYASVPHKTSTGDVDDEEDEHEGEHDGEQQDGGEGNVEKKPESEKKNGPEENTVKQEIQVKIEVKTDVGEKKELTQEEKVADERRRLAESYRKHKIESNPPEEYWVPKVEVDPVIAHAELTMKTNVIGTLNVIHCFLPLFRAHGRIINISSSLGVLSSISNEELREKFASTYLLESELMDILKTYITDVKNDKTEERGWPKNVWVLSKLAMNLMTRILARDHKYDERKDLLITSCCPDLSEDLTPLTADQGAETPLYLALLSKGEKNLHGKIFKDKKIMEWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0I2</accession>
    <name>A0A6S7H0I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001580">
        <property type="protein sequence ID" value="CAB3989981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0I2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12540" checksum="028BE7C9182185A8" modified="2020-12-02" version="1">MRKQENESSDSQLQTCHRPASGDTVLLTSDEDKSMSTNEEESKNTNEEESMSTNEEESKNTNEVESKSTNEEESKSVNEEDRAEGQMYIEEKIHPVNTEIYYGPKQNEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6S0</accession>
    <name>A0A6S7H6S0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001998">
        <property type="protein sequence ID" value="CAB3992187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6S0"/>
    <dbReference type="OrthoDB" id="10591104at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="16880" checksum="57DBD98F8DAB60E6" modified="2020-12-02" version="1">MADEENNPGADVNVFILNVASADAADILTTSNAESTVSAEKKIEELHCEETLQLWLEKNSLAIFFDNMKKCGLTSISHLEDITEGDAESDLGMTKFQARRLLRLFNEWKAQRNHEKKGNIQQSTVQAFLHLLRITKLLLFTCRPRFKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKB6</accession>
    <name>A0A6S7HKB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087626</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005119">
        <property type="protein sequence ID" value="CAB4005186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HKB6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="6465" checksum="FBA4EBCF53F69D6F" modified="2020-12-02" version="1" fragment="single">MKGILLVALVILQLVLLSKGSLPKRSQSCPRNPKLEAWKKTVKQILAIKGVREKRQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYI3</accession>
    <name>A0A6S7HYI3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ORM1 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A043456</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ORM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003673">
        <property type="protein sequence ID" value="CAB3999801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYI3"/>
    <dbReference type="OrthoDB" id="1932233at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000303">
        <property type="term" value="P:regulation of ceramide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007203">
        <property type="entry name" value="ORMDL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12665">
        <property type="entry name" value="ORMDL PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04061">
        <property type="entry name" value="ORMDL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018147">
        <property type="entry name" value="ORMDL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3999801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17817" checksum="01C38D6F4184EEC9" modified="2020-12-02" version="1">MAEKATHSRFNPNESWLEGRGSWLTYGVIVCITHLAILSIPFIGTATAWTLTSITHCIATYYFLHYLKGNPFENSVDGGSQGKDRRLTHWEQINQGAQNTSTRKFMTLVPVIIFILASFYTKYDLLHFLVNTVALASALIPKLPQLHKVRLFGINRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I0Q0</accession>
    <name>A0A6S7I0Q0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038761</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007289">
        <property type="protein sequence ID" value="CAB4011854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I0Q0"/>
    <dbReference type="OrthoDB" id="5976830at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1800.10">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004211">
        <property type="entry name" value="Endonuclease_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038563">
        <property type="entry name" value="Endonuclease_7_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02945">
        <property type="entry name" value="Endonuclease_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1112" mass="129094" checksum="CD5767912843103F" modified="2020-12-02" version="1" fragment="single">GLGRKRWIAPYLQEFVEDADGGVYVGDVIRERLLVYLQETYIVMRRCRNKFKHHVRRCVNWNDRWEEFWYREEKKMENPADTMKAYAEMITKINDNRKLKRNIAAMRVVRMLLLIFQWKDRGSNWRVILVEKHEVDVVHFNPLVGSSFIELPAPLKSNKNGLINIVNTDDDECFRWCHVRHLKPKDKRATEITRSDREFAKTLNYNGIGFPVRIDDIPKIEKANEIRITVIMLKGEKMFFPRYTSKFDYKDHMELLLMEDNEGNTHYVLVRDISMLLSSLSKTQHKRFYCLSCLNGFNSQERLDKHSGTCREVNGTQKTMMPKRGSKVVFKNHKRQLPVQFVIYADFESLLIPVDGEGKCLRKTHDHEMCSYGFKRVCYFDGKYDGEYKSYRGVGAVGRFLSDLLGEVEECNKIIQSEFNKVAIMSVKDYDKLEKAVECHICGGKFSEGDKKVLDHCHVTGKFRGAAHNSCNLNFKLTGKIPVVFHNLRGYDGNFIMQGVAELGEKIEVIANNMQKYMSFRVGKQLVFIDSMQFMSSSLEALVGNLDKSRFKRMQSEWQGEELEMLLKKGVYPYEYMSCWEKFDDKSLPEKSAFYSSLYEEEVNDNDYSRACKVYKKFDCKSLGDYHDLYLKTDVLLLADVFEDFRRVCLDAYKLDPAHYISAPGLSWDAMLKRTGVKLDLLSNVDMYQFIEKGMRGGVSYIGHRYAKANNKYMSDYDPEKPSSYIMYLDANNLYGHAMSEELPYGKFRWIDVDKVKLEDYGKGKEKGLILEVDLEYPSELHKLHSDYPLAPEKMEISDDMSTGVKKLVTTLTGKTSYVCHVNNLKLYMGLGMKLVKIRRAFEFAHSKWLKGYIQFNTDMRTVAKNDFEKNFFKLMNNSVFGKTMENLRKRVDVKLMVDGNKLKKAVASPCFVRAKVLSGGLVAVKKVKEVLLLNKPVYIGMSILDLSKTVMYDFHYNHIRKIYGSRAKLLFTDTDSLMYRLHTDDAYKDAANFSDKYDTSGYNKNSPFYDETNKKVIGKFKDEAGGIPIREFIGLRSKMYSYEKDDGGGGKTAKGVKKYVIKKFITHEDYKRTLVEGLQMKHSMNVIRSNCHDVGTEEFPGESFRISNEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I1W4</accession>
    <name>A0A6S7I1W4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A016012</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007470">
        <property type="protein sequence ID" value="CAB4012334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I1W4"/>
    <dbReference type="OrthoDB" id="6019916at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031410">
        <property type="term" value="C:cytoplasmic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001764">
        <property type="term" value="P:neuron migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029865">
        <property type="entry name" value="KIAA0319-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013980">
        <property type="entry name" value="MANSC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011106">
        <property type="entry name" value="MANSC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46182">
        <property type="entry name" value="FI19480P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46182:SF2">
        <property type="entry name" value="FI19480P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23597">
        <property type="entry name" value="KIAA0319_N"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00765">
        <property type="entry name" value="MANEC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043758730" evidence="6">
        <location>
            <begin position="23"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="33"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="477"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4012334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="477" mass="53294" checksum="50A5AD34BE0D559C" modified="2020-12-02" version="1" fragment="single">MKRKSCYLFAGTLLILICVIRGGTKDSRHRHTNSTSISNSDSCETSPVRRNVTLRGGIKAGYFHKLAQYVAMELCVQLCCQEKGCDVAFMIGKNCYGVKCFSEELCHVVPANNAPRALMISKVDFRGEVYLQKFMTERLKCFQTSVEHNVTLKGGLQAGNFTAVGHVENIDACAKLCCVRDGCELALMVNNHCFMVNCLIKERCLSTPVMNKQFRTHIARVNRTKVIAKEQQTEIGGIYKSHNSAPGKTSKLMCKNGIVQYNQTLLGGFDAGKFKLLSHSANMSACIRLCCGEMTCDVAFMIERKCYGVVCRTLRLCETIPAKTSTMLNHLSPKISYITSRNEEVIKDKDNTFNSNKQVYCNSDKQVGLFIFGWAYIQGGLIFGMRFTVVGYIAQFEFFTNIPSAINEIKLISSRGPILNNCFFKTFYIQSLLNDKGISEHNATQSVIFCGNLGTFYLGCPIYMKPGRSQTGRKIEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I223</accession>
    <name>A0A6S7I223_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003478">
        <property type="protein sequence ID" value="CAB3998958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I223"/>
    <dbReference type="OrthoDB" id="8042009at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="67" mass="7801" checksum="CCDBF1FF1E7A7440" modified="2020-12-02" version="1" fragment="single">MASGNLQWAAPKPLKLDGNVSENFRKFEEHWTLFEKTELKGRSEDERCSYFLLCIGEKGREVHKTLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I640</accession>
    <name>A0A6S7I640_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">WD repeat-containing protein 4 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A086302</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">tRNA modification; N(7)-methylguanine-tRNA biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Forms a heterodimer with the catalytic subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the WD repeat TRM82 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004254">
        <property type="protein sequence ID" value="CAB4002091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I640"/>
    <dbReference type="OrthoDB" id="371245at2759"/>
    <dbReference type="UniPathway" id="UPA00989"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043527">
        <property type="term" value="C:tRNA methyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106004">
        <property type="term" value="P:tRNA (guanine-N7)-methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_03056">
        <property type="entry name" value="TRM82"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019405">
        <property type="entry name" value="Lactonase_7-beta_prop"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028884">
        <property type="entry name" value="Trm82"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16288:SF0">
        <property type="entry name" value="TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT WDR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16288">
        <property type="entry name" value="WD40 REPEAT PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10282">
        <property type="entry name" value="Lactonase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 6" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_03056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4002091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="391" mass="44072" checksum="47B01D77EB5B5DC5" modified="2020-12-02" version="1">MVVIKCSNNGFFAVICEKILRVYDLRNSSLVHKFSLATEESTTDTAESKDEENQLLNTTFTYGCIFSNSGKLLAAFADGKDLVVLRTEDWKQIGKRKVAKRPTAVLFTNKEDCVVISDKAGDVYSYKIAEENGLSNESLLLGHVSIILDMAISRDDRYILTADRDEKIRVSCFPNSYNIKSFCLGHTEYVWKIVIPEKLPQISVTASGDGTLRFWDYKLGKTIHMETFTNVQSDKSSNVVSCLTCSRTENIVFVGLEGSLSLYAFKINEKTTVEQISIVDLTLDGPPCCLAVDYSNRLWVVQSYKEQPLVVFEMSAEGGIYEFKRQSMSSLLTAEDVDLIYEGTKNRPCLLNLKKSKADPGSLDYFDRKRDRIEAKRKKDGTELESKKIKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6R4</accession>
    <name>A0A6S7I6R4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058679</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007188">
        <property type="protein sequence ID" value="CAB4011550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6R4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="16848" checksum="B0D9185131C076FB" modified="2020-12-02" version="1">MGSKIIAAYDDDYKKYYPENWSGITLEEQQNLFDHMLMYIVQKDLQNKCGGRLIDFDMEWVTQGVEIMDEYAHFYAGDLYTDIIFYGLDDIKWDNTCDGEYYRDTVVIKRLYNMYFEYYHNHTVTFNNVHTYMETFMEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I8Q3</accession>
    <name>A0A6S7I8Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004379">
        <property type="protein sequence ID" value="CAB4002532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I8Q3"/>
    <dbReference type="OrthoDB" id="3176171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022164">
        <property type="entry name" value="Kinesin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12473">
        <property type="entry name" value="DUF3694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="353"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="557"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="557" mass="63809" checksum="52E4E131D8C53700" modified="2020-12-02" version="1" fragment="single">IGVVVFASFLDYIENKPLVFEVFGHYYQQPSRLERKLSSPRLSELVPVREIKNARTAEVSKESQADPLLLRLPSPKRSQDPGLVYELLLRVQFLELAPSGEYVPCFVKHCHGNLNSGIVLLHQGIQRRILVTILHDNYPEIRWKGVAEIWMGNILPLSLRESDGTYQMTSSGDNQWLPLAPGQIHLSHPVESISFFKFEIPWDSSLHNSKNLDRVTYPGDLISITLFVSLQLEGFEQTVSLQKELHVAIYNRASKTVPSRSIWSQLFSSKPADNPDMNQCSGVYELLITPISEREERENTAVAYVRGEENLNNWRPRSSSLIEEHFKNQSKLLYIQEVCKVRHLLTLRSKLSTSEHDLNSTNSSARSEDSMCSDEGSKHTECESMINIEKTDKVHAILDKCIHLLTHSRLDRRDVKKFAQTTSGDSSHVSGMTTEMKAIVKNNVVAKKGYLAVLEDDSSRWRKLWMVIRRPYAFFYRTEQDQIERNIVNLSHTKVSCHEDDKDLQGNIISLQAKHRGYLVKPMNQKDKEFHEWLYAFDPLLAGTIRSRANSVRLQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IAW3</accession>
    <name>A0A6S7IAW3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A051272</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008289">
        <property type="protein sequence ID" value="CAB4014407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IAW3"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="30"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="204"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="102"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="224"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="237"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="38765" checksum="BA860F82DB742F84" modified="2020-12-02" version="1" fragment="single">MYNVTDDTFEESFSDQCEIAKELKNQYEKQASIHSETSTKHDESNTKSKNLHEESIGLYTVTKSGNLQTKSTNMHNPLGSSASCNRDSAEISRLNSKLDRFSENVTNKLQNLSVEINNIKENKPYSILVLDNVVNDLKEDKLVLIRKNDELREQNMDMSHIISDLKMANKNLESEKSSLLTALKLIQNDYQQTCTKTIVKNDGENNVELPANDKHLNTEASTGKNRKKNGKKSKSKPSTQNSSQQTADVDTSGGIVNTSSSKSTEQGKKTVVIAGDSIVKNTVGPKMSADDPNHHFIVKPFPGATVSDMEDFVKPLTRRTPDKMILHVGTNDLRSHSTPKIIADSIVNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBZ7</accession>
    <name>A0A6S7IBZ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008329">
        <property type="protein sequence ID" value="CAB4014499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBZ7"/>
    <dbReference type="OrthoDB" id="10568324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="13361" checksum="DAEAA67CD722ACD8" modified="2020-12-02" version="1">MSSKILLALGVVLAISALGSAQKCNVCAYWTTQPKEQQKCTSATVTCPAGTSYCFTSSFTFLNGTEAVKRNCGNPDFCGANACTRFIAALKLTSCSISCYNTSGNSATGVMVTKFTLSLMVIVGLILA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIQ9</accession>
    <name>A0A6S7IIQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027969</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009610">
        <property type="protein sequence ID" value="CAB4017577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIQ9"/>
    <dbReference type="OrthoDB" id="5984732at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17714" checksum="5CF69378C97973BD" modified="2020-12-02" version="1">MAAKALSFTEVVEQVADNAEDVYQNYADKYLSGPEEERIESETENTQSAAYALQAALKSSTLPEFIEPNCYISSNRKAAVISFTSLKSVINLFTIICGYTEMEVRKYCSRSLKSKGNAELIVNKVKDFAFIYKYKKGQFIISFNFGIWNPNGFPQHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IR83</accession>
    <name>A0A6S7IR83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023969</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010509">
        <property type="protein sequence ID" value="CAB4019529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IR83"/>
    <dbReference type="OrthoDB" id="10066002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31025">
        <property type="entry name" value="SI:CH211-196P9.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31025:SF9">
        <property type="entry name" value="SI:DKEY-286J15.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18082" checksum="57B2F444DFFE538C" modified="2020-12-02" version="1">MLDKTIISYYGYNTKIQLVLDEQKMNIAISLLPCILPTGRNGEKRCSIDEAMRSFLDVKPIGTNMPKLLEEASRSPFILAIGARESPNQVFVVVDGQGLEQPSLVKAVDVCFKLFYILDVHYPWQCAVTWEFIQKVLYGIEDKLKGKTSPAVIAMRAALNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3X3</accession>
    <name>A0A6S7J3X3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CST complex subunit STN1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Suppressor of cdc thirteen homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A027000</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
            <location evidence="2">Telomere</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014328">
        <property type="protein sequence ID" value="CAB4026655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3X3"/>
    <dbReference type="OrthoDB" id="77828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000781">
        <property type="term" value="C:chromosome, telomeric region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.980">
        <property type="entry name" value="CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015253">
        <property type="entry name" value="CST_STN1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042082">
        <property type="entry name" value="CST_Stn1_wHTH1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040260">
        <property type="entry name" value="RFA2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018856">
        <property type="entry name" value="Stn1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13989:SF33">
        <property type="entry name" value="CST COMPLEX SUBUNIT STN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13989">
        <property type="entry name" value="REPLICATION PROTEIN A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10451">
        <property type="entry name" value="Stn1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09170">
        <property type="entry name" value="STN1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0158">Chromosome</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0779">Telomere</keyword>
    <feature type="domain" description="CST complex subunit Stn1 N-terminal" evidence="10">
        <location>
            <begin position="42"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Stn1 C-terminal" evidence="9">
        <location>
            <begin position="173"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF09170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF10451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4026655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="39648" checksum="876CB75D846E6CA3" modified="2020-12-02" version="1">MENALPVKSWGLDPLYWTHVKLFVRDVLQLKNYSGFKGVYAISNHPIAQVLVVGYIVKVDKREKLTTYGVDDGTGCLSCCMWHNQNNDLVEATFGDLVTVMGKISVFREERQITASSFYIETDPNVEVFHWLEVMKLREIYEKPFEVSENPETKTVTKPWLKNELEIEIDRLEESLKSAIAEYLEITDALSFTLDTLCGVNKVMEIMRQLTSKYRERSSDKKVEMKQPLVSNPEVRQVIKQTLRKLDKDGIVYCKPITDYNHREYEFISIKKDLSPRIVNVIKEICHSQGESSCGIALNKIVSNLKSLEKYKNVPRDRVKVGLEHLMNNGDIYETRQGHYRIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J4F4</accession>
    <name>A0A6S7J4F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005986">
        <property type="protein sequence ID" value="CAB4007998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J4F4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12525" checksum="F478CA07B0237A82" modified="2020-12-02" version="1">MKVAVLDLYIAKRKLKHSKAALKREKVDIQIWNDDDIEDDEDKEDNDDPNSDRQTLKKRIFPIFCRPQDRGEFVELGWEEHEFLTLHEIDLRNMCCPKIDNIIIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5Y8</accession>
    <name>A0A6S7J5Y8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013853">
        <property type="protein sequence ID" value="CAB4025847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5Y8"/>
    <dbReference type="OrthoDB" id="5982943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="265" mass="31004" checksum="4D7FA56F8267532E" modified="2020-12-02" version="1">MVNALAYRESWRWKYMDDLTISETLHIVNNLCSSNLQQSSNDICEFVHEKKMMLRMFVCFKRVPPVIDNITINNVPIERVSTYKLLGVNLSSNLKWNEHVNMITKKAAKRIYSVRLLKRAGVADTDLVTFYSTSVRTVLEYACPAWFYSTIEYLREQIESIQRRIMRVIFPDTSYQEALDLAGIPRLCVRLEDLCDMFFSNIMKENHKLHGLLPPTYQTHYNTRSQASGIQFQLPTYKTNRSRNNFIVKSAVKWNNTIRKNIGNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8P4</accession>
    <name>A0A6S7J8P4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014162">
        <property type="protein sequence ID" value="CAB4026384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8P4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="91" mass="10102" checksum="97C3F509129DE524" modified="2020-12-02" version="1">MAAKTTPLAAKHTKIKIFLFVTRLYEYGCNTAMYLSNVIPNNISVDIPTVIRDNLCARTATKQFESPLISPERLARYKGIPKTPTTKSAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLF8</accession>
    <name>A0A6S7JLF8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034162</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017829">
        <property type="protein sequence ID" value="CAB4031691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLF8"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="10453" checksum="0D0F1727CF080FA4" modified="2020-12-02" version="1" fragment="single">MDAGCFTGAVFLDLSKAFDTVDHTMLLDKLRILGVDEDSLDWFESYLSERSQPTSVSDSISSPLLVSVGVPQGSILGLLLFVVYVNELPSLNLQSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPB1</accession>
    <name>A0A6S7JPB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Retrovirus-related Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A011474</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020132">
        <property type="protein sequence ID" value="CAB4034456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPB1"/>
    <dbReference type="OrthoDB" id="425619at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4034456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="21983" checksum="2B8D6489088C06CD" modified="2020-12-02" version="1" fragment="single">MKELEVSIGTLTIFHQFMVVGMRNTCILGADFLKSGRMVVDIANSKLTWPSGEVALVIETTAPTVNKLRVLIDNYSDIFVSGPNDPLGRTTLAEYSIDTGDSRPVKQRPYRVPVHLNTVVNKQVNDMIERGAIRSSNSPWSSPIVLDPKKDGDYRFCVDFRRVNSVTKKDAHPMPRIDEILDQLGGARYFTTLGLASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSC2</accession>
    <name>A0A6S7JSC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021242">
        <property type="protein sequence ID" value="CAB4035646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSC2"/>
    <dbReference type="OrthoDB" id="5860362at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="21176" checksum="B8913A4A73AD7157" modified="2020-12-02" version="1" fragment="single">PTDAAVSTQAPTDAAESTQAPTDAAESTLAPTDAAVSTQAPTDVDESTQAPTDAAESTQAPTDTAESTQAPTDTTESTQPPTDAAESTQAPTEVAVSTPGVTDVMSTSGPTELYYINLKVVNNYGYDVDVRTNTDIIQDYIVPNGEDRHIQEITETAGYFVIRIYDRRDGILILHNGESYVKITPKTSPQYEYNIVLGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTI1</accession>
    <name>A0A6S7JTI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003356</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020526">
        <property type="protein sequence ID" value="CAB4034907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTI1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11821" checksum="D5A32674CCA12DBC" modified="2020-12-02" version="1">MAVKRVKRPFNFPVGDSPGKPKNKIPAFPRPSSRKSLFSQKESTGLSKKPIPWSDNETTSLVQYICLYWKDAWTNKWPSTKDPEFWKGCADAVNKTCNSNRTGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTP8</accession>
    <name>A0A6S7JTP8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Down syndrome cell adhesion molecule homolog isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010641">
        <property type="protein sequence ID" value="CAB4019822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTP8"/>
    <dbReference type="OrthoDB" id="6418794at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050964">
        <property type="entry name" value="Striated_Muscle_Regulatory"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13817:SF166">
        <property type="entry name" value="NEURONAL IGCAM-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13817">
        <property type="entry name" value="TITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="431" mass="48138" checksum="0A6E48C2E5A8127B" modified="2020-12-02" version="1">MAMFKGVHLPNEKALFPDKPTNLTFTNIKSRSAEISWINPENTGDGVLTGFWIIIKKENSSILNIITKKVKKYKSDNLSPYTTYEISVAAGNKNGFIEGKTTSFTTSEDGPEGPPLNVTVIAESSSLLSVTWEPPKRDKRNGIIVSYTVCISHEESKPCFREYTTKNKMIVIDNLFASTKYYVRVLASTKVGRGPTVKVKGNLPMEKFICRHFYVLALELKDGQESQSPASYRNNELVTYTEAEKSTDPKPYIAAIVTSKDENMFILGDGGNTSNPTSRRHRSTSSDYYNGPLEPGTSYSIFQRIFIHNKGEYYSTDWSPASKTNEYSGGPRVLTKISSGDIKAKEGELVNLLCSAQGELPITSTWEKDQQPLESLVKIKQPHRSSFLVVTVQDQTSFGKYICLIRDRFKSTTTHTISIQKLKDTGTTAFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYY3</accession>
    <name>A0A6S7JYY3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A058360</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020021916">
        <property type="protein sequence ID" value="CAB4036328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYY3"/>
    <dbReference type="OrthoDB" id="10020333at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044773">
        <property type="term" value="P:mitotic DNA damage checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44167:SF23">
        <property type="entry name" value="CDC7 KINASE, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44167">
        <property type="entry name" value="OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="5 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="164"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="203"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="245"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="258"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4036328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="39845" checksum="0ADC2058D0DD1D60" modified="2020-12-02" version="1" fragment="single">ATQSAPRAGTSGFRAPEVLLKYPQQTTAVDVWSAGIIMLCLLSGKYPFFRCMDDMTAIAQIITVFGKQRVVESTKHLGKYMVTNSISSGYELKDLCQKLRAAKRKEHEESKTKCCSSCSKLLAKNKSNPSSPVSNLRRTSLRARECISKEGNAIFSPKADAEGNCQAGGIDRKDTISTKSSMVGDSKVKNISQVRGNQEENTSHVCTQNARNMQFGKARTEIKNPKPENLSKGYSDKTKVDEQLSESNDLRSNSVSDVKSHTLKEKTKARFLSEGDHPISEKSEDCPRDQTGSGTSREHLDGSRCVCDCGSCPEYVPISTYDLLERCLDLNPATRITASEALKHPFLRDSKNSRISSQPER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZ81</accession>
    <name>A0A6S7JZ81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RING finger 151-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A009976</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020306">
        <property type="protein sequence ID" value="CAB4034660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZ81"/>
    <dbReference type="OrthoDB" id="47172at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051746">
        <property type="entry name" value="Kelch_domain_containing_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4034660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="513" mass="58301" checksum="E9661CC4D02F747F" modified="2020-12-02" version="1">MASYIQGYDEERFATTVNRNFLCLICFNVLREPVLCPRNHHCFCRSCITKHLENSRRCPTCADELTLETLAEPQRMVKDYINELNIHCIYINRGCQEILQLQHLDNHEGTCGFTPAVCTNHGCGVTLNQRDLIHHQSELCEFRKLKCHSCGEMTKTLADMKKRMTNVETNMTDMKTDIEAVNNEVRGLKTALIEGFDEMKDVLVKMEDKKEENTRKVRNTASGDKENIVVAGGSGTNSVEMFNWRQRTWSPLQSLPKKRFGATSFVYNNHVTIAGGRSPGLVSDMIRMNFNPNPDLSMHWTDCPVKLPSKLERHSSVLYNDHLIVTGGYNGNGISDCIHEVQLVPPYTVKTLSRMPEPRRGHSTQLFDDNLLIVGGSTTDRYQDYLSSVVVYDIKKNECKQLAPLPYEVSLMATVRWGDNIVLMGGADKRGKVLHTVIIYNVKTEQSHLLPRMRCKRRGCTAVVIGNNIVVLGGDDERGRDLKSVEAFNFESYTWQELPEMSRARWFPTAVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4N7</accession>
    <name>A0A6S7K4N7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hormone-sensitive lipase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088362</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023281">
        <property type="protein sequence ID" value="CAB4037614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4N7"/>
    <dbReference type="OrthoDB" id="408631at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004771">
        <property type="term" value="F:sterol ester esterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004806">
        <property type="term" value="F:triacylglycerol lipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008203">
        <property type="term" value="P:cholesterol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019433">
        <property type="term" value="P:triglyceride catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010468">
        <property type="entry name" value="HSL_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23025:SF3">
        <property type="entry name" value="HORMONE-SENSITIVE LIPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23025">
        <property type="entry name" value="TRIACYLGLYCEROL LIPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06350">
        <property type="entry name" value="HSL_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hormone-sensitive lipase N-terminal" evidence="1">
        <location>
            <begin position="17"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="262" mass="30303" checksum="515D60E6AB604E5F" modified="2020-12-02" version="1" fragment="single">METYYIESDYEYLPGLFSSLTEVLVENRQYYSGINDCSKSREFSQCFEDLIEITGKTLKLLLEVAAVSPLFDYDPNTKGNGYRTIVRVVEMCFRRLHSLGEDFQKSRAGFLFRSDHYYKEIVSYLDLSKGLFKFLEFAKLLLEWSDGNDLFPPENCYDAKTMTECHLHEMEKECFYGRRLGFHFNTALRGFLTTVCISMASFGDGYAKHDGSFTVAAVSLLNGPKYLINPDLRAKRLISLSTLVDMEFCKAFWSLTERYGFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8P1</accession>
    <name>A0A6S7K8P1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A073254</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009359">
        <property type="protein sequence ID" value="CAB4017008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8P1"/>
    <dbReference type="OrthoDB" id="5984733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023779">
        <property type="entry name" value="Chromodomain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00598">
        <property type="entry name" value="CHROMO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="359" mass="42767" checksum="2A27B79D5F473574" modified="2020-12-02" version="1">MAEKYLSQIYYDPESPASFGGVDSVYRAVKNEGKYEISRNKIRQWLQKQDAYSLHKPVRYRFRRNRVIVGAMDDEWEADLVIMDSLSQQNNGYKYVLTVIDVLSKYAWVEVIKAKTGNNLVKAFDKIIKKGRKPKMFHTDKGTEFINRQFQTFLKKHGIRFFTTYNETKASIVERFNRTLKTKMWKYFTANNTLKYVDILQKLVKSYNRSRHRSIGMRPVDVNKSNENIVWQTLYGKGSKKSIQFKFNNGDQVRISKAKRTFKKGYLPNWTEEVFTVTKRVPRRPPVYKISDYDGEELEGTFYEQELQKVNKSDSDYYRVEKVIRSRMRNKRKEYYVKWLGYPDKFNSWVPAESVKDLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBZ0</accession>
    <name>A0A6S7KBZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Solute carrier family 41 member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A012001</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SLC41A transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031065">
        <property type="protein sequence ID" value="CAB4042895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBZ0"/>
    <dbReference type="OrthoDB" id="5791097at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:monoatomic cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.20">
        <property type="entry name" value="SLC41 divalent cation transporters, integral membrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006667">
        <property type="entry name" value="SLC41_membr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036739">
        <property type="entry name" value="SLC41_membr_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045349">
        <property type="entry name" value="SLC41A1-3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16228">
        <property type="entry name" value="DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16228:SF7">
        <property type="entry name" value="SLC41A_MGTE INTEGRAL MEMBRANE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01769">
        <property type="entry name" value="MgtE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161093">
        <property type="entry name" value="MgtE membrane domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="SLC41A/MgtE integral membrane" evidence="9">
        <location>
            <begin position="71"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4042895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="18728" checksum="35D6BEBF921F2D0B" modified="2020-12-02" version="1" fragment="single">EDFQELPLTPEEFGKLQKSEEKKKIELETKKLGGGLKRGGPWSSVDISKCGGPVQYYTISCRDISNVVVQCSVDISNVVVQYISNVVVQYISNVVVQFKLRQLSSGEISGVLLLLTADWLVHFIWKRGSDPDNVAIPYLTALGDLLGTGFLAVAFHILWLVGDRDSDVGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCD6</accession>
    <name>A0A6S7KCD6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">adenosine deaminase</fullName>
            <ecNumber evidence="3">3.5.4.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A035471</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.4" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020028300">
        <property type="protein sequence ID" value="CAB4041428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCD6"/>
    <dbReference type="OrthoDB" id="272271at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009897">
        <property type="term" value="C:external side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004000">
        <property type="term" value="F:adenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006154">
        <property type="term" value="P:adenosine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043103">
        <property type="term" value="P:hypoxanthine salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046103">
        <property type="term" value="P:inosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060169">
        <property type="term" value="P:negative regulation of adenosine receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001365">
        <property type="entry name" value="A_deaminase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006330">
        <property type="entry name" value="Ado/ade_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11409">
        <property type="entry name" value="ADENOSINE DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11409:SF43">
        <property type="entry name" value="ADENOSINE DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00962">
        <property type="entry name" value="A_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Adenosine deaminase" evidence="7">
        <location>
            <begin position="28"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4041428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="28934" checksum="C7C236A1CEE06BF3" modified="2020-12-02" version="1" fragment="single">MRCDLGMGESSDIKLIDILLDYESSMFTKRDIPLPAYDAKNLEDYVSLKEPKSLTDFLHCFSHFLPVLRGDPEALERIAYEFCEDIANNGVLYCETRYCPHLLANCGVDGVQCNGSTEQNCSPRKVVESVCKGIERGCKDFGVKVRTILCCMRHRPDWSLEMVDLCEEFRNHNVVGLDIAGDESMGEIPAIKEHIMAFQRAQELGIPRTVHAGEAGPAASVHEAIFLLHANRIGHGYHVLQDPELYKLVIEKQIHLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDS1</accession>
    <name>A0A6S7KDS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049529</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010068">
        <property type="protein sequence ID" value="CAB4018578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDS1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="33961" checksum="5DE3C954FCEDF3FF" modified="2020-12-02" version="1">MKRQITGSWLDGMEDSGIFKTMKRQWNIAIIGSRMDGMENSRIFKTMKRQITGSWLDGMEDSGIFKTMKRQITGSWLDGMEDSGIFKTMKRQWNIAIIGSRMDGMENSRIFKTMKRQITGSWLDGMEDSGIFKTMKRQITGSWLDGMEDSGIFKTMKRQWNIAIIGSRMDGMENSRIFKTMKRQITGSWLDGMEDSGIFKTMKRQITGSWLDGMEDSGIFKTMKRQWNIAIIGSRMDGMENSRIFKTMKRQITGSWLDGMEDSGIFKTMKRQWNILITGSRLDGMENRAGFSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEW1</accession>
    <name>A0A6S7KEW1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Gastrula zinc finger -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A000938</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032201">
        <property type="protein sequence ID" value="CAB4043367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEW1"/>
    <dbReference type="OrthoDB" id="6077919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000446">
        <property type="entry name" value="Zinc finger protein"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000145">
        <property type="entry name" value="Zinc finger protein 574"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000624">
        <property type="entry name" value="zinc finger protein 697"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050527">
        <property type="entry name" value="Snail/Krueppel_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24388:SF53">
        <property type="entry name" value="CHORION TRANSCRIPTION FACTOR CF2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24388">
        <property type="entry name" value="ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="13"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="13"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4043367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="492" mass="58728" checksum="99B46C90EBE0A852" modified="2020-12-02" version="1" fragment="single">MDLYISTESNNPYQLPDLLSSSDADTSTSYNSMLVANANVTEGHLPAHPEAVEAPIPHSNNLKDRICQICYMAFKTTTNLQDHKKIHSPLKKNDELACATCSFQTKKKKDFNKHMKIHLKDKPFECRICNKAFKRRTNVKRHEELHKEERPFKCTICNWTCKLRYILKMHMETHTEDKPFECRICNKAFKRKFDVKIHEKLHKEERPFECTVCDWTCKSQRNLRSHMETHTEDKPFECRICNKAFKRKFDVERHEKIHKEERPFECTVCDWTCKSQRNLRSHMETHTEDKPFECRICNKAFKRKFDVERHEKIHKEERPFECTVCDWTCKSQRNLRSHMETHTEDKPFECRICNKAFKRKFDVERHEKIHKEERPFECTVCDWTCKSQRNLRSHMKIHTKDKPFECLICKKAFKRKDYFNKHMTVHKDVAKETNSAVNMNPPVEYQNNNEAISKKTDDLDILYGLDRAKVAEIKEPLEKELANFNSLETNNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGN7</accession>
    <name>A0A6S7KGN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Interferon-induced, double-stranded RNA-activated kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A057039</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035817">
        <property type="protein sequence ID" value="CAB4044685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGN7"/>
    <dbReference type="OrthoDB" id="341578at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050339">
        <property type="entry name" value="CC_SR_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11042">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="77"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="348"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="357"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4044685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="487" mass="55989" checksum="DBA89E4E117D1069" modified="2020-12-02" version="1">MNAFAELKLIIKLLCLTFLNFLFVLALLGHITTQHVVSSDNLQYISLGRNSLFKDMDTTDNEEALYAEFEKALSKDYQIDGRLGKGAYGQVFKAKCRKDGKTYAIKMLTANNDRYQTRELEALIKLNLLEESKRNFIEYFKAWFLEVGNVQKLCIQMELCWGDLKSFVFKNRQFGPQVTQAQDPQFYQHVFQQILNGLVVIHSIGWVHRDIHPGNILIVNSNPQRISDIHVKIGDFGLARCIGYKGIQFNVSCGKTLHPQLEQCTPAREGDSIYSAPELFTTTYDEKVDLYSAGAVLYFISRYPEENENKWITELKNLIQGKVDINESLVYKDDKKLCSLIKDLRRRNPNERPSASDAKKYMFPEAKDSTDGKKAQKIKFFARKENEDLRTCSLGEFTFSALKAEVERRTRVKASQLRQEDMINCEKMRIVIDDDEDVEKIFENAAQKAQEGRYVVVVVTEKAEEYNTETRQISSGDIMMQSPPDTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGV8</accession>
    <name>A0A6S7KGV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088598</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028116">
        <property type="protein sequence ID" value="CAB4041310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGV8"/>
    <dbReference type="OrthoDB" id="10249691at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="52" mass="5880" checksum="2B7BD411943A6233" modified="2020-12-02" version="1" fragment="single">MASLNHSREVGDLLDRMTLGVVKTLENKPGVCDVRFLDKKPAEMSAIYSWEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIE4</accession>
    <name>A0A6S7KIE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dynein heavy chain 10, axonemal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036080">
        <property type="protein sequence ID" value="CAB4044757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIE4"/>
    <dbReference type="OrthoDB" id="447173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030286">
        <property type="term" value="C:dynein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045505">
        <property type="term" value="F:dynein intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051959">
        <property type="term" value="F:dynein light intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035699">
        <property type="entry name" value="AAA_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026983">
        <property type="entry name" value="DHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22878:SF63">
        <property type="entry name" value="DYNEIN AXONEMAL HEAVY CHAIN 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22878">
        <property type="entry name" value="DYNEIN HEAVY CHAIN 6, AXONEMAL-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12774">
        <property type="entry name" value="AAA_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11658" checksum="4F94C18B9BD5FB18" modified="2020-12-02" version="1" fragment="single">MDAREFEWESQLRFYWDQLPDNLTVRQCSGEFGYGYEYMGLNGRLVITPLTDRIYLTITQALSMYLGGAPAGPAGTGKTETTKDLAKALGLLCVVTNCGEGMDYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KM00</accession>
    <name>A0A6S7KM00_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031898">
        <property type="protein sequence ID" value="CAB4043261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KM00"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12687" checksum="46E2BA018D0E098C" modified="2020-12-02" version="1" fragment="single">MECVGVLSAPEDVISPANIPLFGILAENTAEPGQCYFCFEQIDENELLAMTMHCCQQKAHCRCLQMWATHYIGTDIETVRCGYCRAPFPDKELCYLCLQNKITGQELKETRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KP58</accession>
    <name>A0A6S7KP58_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015293</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036022">
        <property type="protein sequence ID" value="CAB4044744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KP58"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46966">
        <property type="entry name" value="Spectrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="12155" checksum="479A7041DF8B9C2B" modified="2020-12-02" version="1" fragment="single">GFLEELKRNEMSEFVKDSENMSDLNKQTIIKIRELQTRWSAVLAWATKRTVYLNTVIANWREFRQHEVTATEFIDGKEKDLQGIHEEVKAGSDELTKEKVGQLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KTV6</accession>
    <name>A0A6S7KTV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028298</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040166">
        <property type="protein sequence ID" value="CAB4045540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KTV6"/>
    <dbReference type="OrthoDB" id="6007857at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="162"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="169"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="179"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="23699" checksum="7E44CBABFB49188B" modified="2020-12-02" version="1" fragment="single">MAECPEPTEAVQSVAGETLSAIFKYSKDGRDILINISTNGDVQAMVRDVCKTVATLGALYTTYQLLKPLIDSAVTRGLGGERDQEVRDIKPGSLKVLLHCLTDERFLEVLDDYECGRLKDRLQKEFSQSGIEMKDMKVEILNMEEVSKTKKAINIRKNPVDLLLRPTRRQNFPNSTTDPTAQHTQQNPTAQQNPTRPNSTTDPTAQQTQSYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LR98</accession>
    <name>A0A6S7LR98_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Golgi-associated plant pathogenesis-related protein 1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Glioma pathogenesis-related protein 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A019799</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="7">Homodimer. Interacts with CAV1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Golgi apparatus membrane</location>
            <topology evidence="6">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025102">
        <property type="protein sequence ID" value="CAB4039229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LR98"/>
    <dbReference type="OrthoDB" id="10066937at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05382">
        <property type="entry name" value="CAP_GAPR1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.33.10:FF:000015">
        <property type="entry name" value="Golgi-associated plant pathogenesis-related protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001283">
        <property type="entry name" value="CRISP-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034113">
        <property type="entry name" value="SCP_GAPR1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10334">
        <property type="entry name" value="CYSTEINE-RICH SECRETORY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00198">
        <property type="entry name" value="SCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="PR-1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0519">Myristate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="11">
        <location>
            <begin position="30"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="208"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="289"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="529"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="327"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00037794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00063947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00069728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00075475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4039229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="581" mass="62466" checksum="5E7B5FE796983296" modified="2020-12-02" version="1" fragment="single">MLAAIARVSDTCHTCASLKKLPPQVVQHSTEEPPKVVGVSFAADVLKRCKQTIIVVRETTTSFTATSIIHDEKANTLRDALAKLCSELHPMEGPPAIIRVDPAPGFVALRTDPTLKRLGLSLEIGRVKNSNKNPVAEKAIAELEEEILRQAPNGGPISTVTLAIATSRLNSRLRREGLSARELWTQRDQFTHNQLPICDRKVIQEQHLQRKQNHPYSEKSKNRNRNASASPTINVGDLVYLVAETQPRSRYLVISVEDPWCVIKKFSGNQLRATSYKVKTTDCLIVPNRSISSTPYPRRDRDSSDEEVCEECPYQTSNVPPTLITPADNSTSPTTTQRPHANASLQIIMDIREQSSLRAFQNDALQAHNRYRQTHKVQALKLNRGLNRQAGRYAQRLAQTGFYKVKRDPYIGPGVGENLFVQCGNHITGSDVTKAWYSQVCGYNFDTPSKSRGYVDYFTQLVWRPTSHLGIGRAFGYTDGMKCTYVVARYFPAGNYLGHERKNVFRGQYNPAMCGGGFGGGGFGGGGGQEGGGGGGGFGGGGGQGGGQGGEGGGGGGGQGGGGGFGGGGSQGGGQGGGQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6A4</accession>
    <name>A0A7D9D6A4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009597</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000049">
        <property type="protein sequence ID" value="CAB3977466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6A4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="25784" checksum="260AB140C848C5F1" modified="2020-12-02" version="1">MSNWIHSRATGFIQDHGLNIFTDDVCNNESSGTDADVTSIAVEDVYDSTVEERPESTKTDILESEVDNLRTDLSHLTSAVIIDWFKKAEIIELQKSKLPNSVEVTEPHGSNVQPREATAAFRNLKISIHVSRHLKRDTHQSAISEDESMTIKMKNESNRNNAIALLVPKYTAVDDRIPIMKMRGFLLHRCGVDVGDINHSYKSPQKFVESVAEVVKDNVNYFLIVTKLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6I4</accession>
    <name>A0A7D9D6I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A087941</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000057">
        <property type="protein sequence ID" value="CAB3977608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6I4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043703025" evidence="2">
        <location>
            <begin position="23"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="174"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="20945" checksum="AEAA734696C60653" modified="2020-12-02" version="1">MSKLFISIVGILVLLSFSAISGENDKLSKDVTDILHDIFGEYVPQIGVDDEIAGLQFYGAAKQSSNHETGEETVRLGKNVEKPNEKRQTIDWSRSQTGVKNAGIAGSCCTGMWGRSLRNTKNGSFRKSSVNGLESPKSDKEIASSAGLTTISGPPSENRLPERKKPVRMLRKSLQPNNPSQYRKFSSKKLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAC4</accession>
    <name>A0A7D9DAC4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">PGAP2-interacting protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Cell wall biogenesis protein 43 C-terminal homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A047591</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in lipid remodeling during GPI-anchor maturation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Interacts with PGAP2/FRAG1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the PGAP2IP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000323">
        <property type="protein sequence ID" value="CAB3980781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAC4"/>
    <dbReference type="OrthoDB" id="68581at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006506">
        <property type="term" value="P:GPI anchor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.10.10:FF:000021">
        <property type="entry name" value="PGAP2-interacting protein isoform A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057315">
        <property type="entry name" value="Exo_endo_phos_PGAP2IP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051916">
        <property type="entry name" value="GPI-anchor_lipid_remodeler"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053912">
        <property type="entry name" value="PGAP2IP_TM_1nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053911">
        <property type="entry name" value="PGAP2IP_TM_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14859">
        <property type="entry name" value="CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14859:SF1">
        <property type="entry name" value="PGAP2-INTERACTING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23022">
        <property type="entry name" value="6TM_1st_PGAP2IP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23021">
        <property type="entry name" value="6TM_2nd_PGAP2IP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23226">
        <property type="entry name" value="Exo_endo_phos_PGAP2IP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="PGAP2IP first transmembrane" evidence="12">
        <location>
            <begin position="140"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="PGAP2IP second transmembrane" evidence="11">
        <location>
            <begin position="315"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="domain" description="PGAP2IP C-terminal nuclease-like" evidence="13">
        <location>
            <begin position="553"/>
            <end position="785"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00058459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00060979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00063490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00070285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00083370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF23021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF23022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF23226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3980781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="827" mass="92831" checksum="60D6051E8D0A7404" modified="2020-12-02" version="1">MPIHNTRGPGTTVTTPDDQGHQVKEFIGEINAELKKKLNDESILELEIERSEVDYRLGLPINPKRLPNLTALIAVKNTISTSTTSVERAFSSMNRICTKLRSTLFPERLSDLLCISLNRDVVDLLDLDEVVTAWGNMRSYIWWSLIHAVGAMIWFYPLNELEITGYEAFAVVLLSPIITNFSFVSRFISSHVGLAVMRLCSMVGVISFQASTTFSRLILLMFGCGCAMLWLCGAWWSKSPRERTLSFWGTILGFFLMLSLRICYVSLNPMWWSPTFNTLTCVTGVVMTVSQAVFISGHSSAHKSKNDSENRVSWHQWLRISIGFSSMFWLTHWVFGEVSLVSRWAGAGAPESGPSPNPWGIAVLIALSVGIMISPRGWTGSFVWWLFGCSGAAMLYYLPKHWSFTGGIILAIYVISIWPLMADKLVRCTPGSTLPVAMGLYIILILASVWVVAFNFVPGGELTRERTDILMAITMLLIGTGIATNIPVVEAKKKQGVKSSSKMAFLKLHGDRFLFFNTYVKIGLLFILTCGCSAMLVRYNNMRYNTPSQSHEKKFSAAVWTVHFGYDNQGWPSYERAAVLLNETGADVIGLLESDCSRPYLGNNDLTMWLAERLGMYSDFGPSTRDHTWGALLLSKYPIVESSHHLLPSPEGELAPALSATVNIHGRLVDFVVVHMGNDGDDLDRKLQAQELARIMDESNNPVVFLGYVTSAPGSRDYHALLNNGRRKDIDPSDGDRWCEYIMYNGLIRQGYARISHAGLSDTEVQLAKFLIPDEPNNYSDNERTTTDENKVSETSRFSKRFGDFYRGHYHAWQHHFHMSTPKYFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DHF7</accession>
    <name>A0A7D9DHF7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CxC5 like cysteine cluster associated with KDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047941</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000929">
        <property type="protein sequence ID" value="CAB3985836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DHF7"/>
    <dbReference type="OrthoDB" id="5970210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041539">
        <property type="entry name" value="CxC5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18718">
        <property type="entry name" value="CxC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxC5 like cysteine cluster associated with KDZ" evidence="1">
        <location>
            <begin position="173"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="334" mass="37449" checksum="DCDBF36959E4BFF2" modified="2020-12-02" version="1">MASKRPKVDFSPEAILREIRKGKELFNSINSLKSNLSVKKVSELLRLRCKENDIDAASLLSLMFGFDMVSWVMATIQHVPRVFSRRKNSCAKIIFEIANKLCQEKHLSLPVVDEMVKYIEEFVPELNVLETQQTRFEDALSSLNGKDGVNYGGFIAPPVEDCMLRGTVLTSPNALSSCTLYTVNGPKPCTNLSLRCQGCKVSYGRSMTHYSSGNASYYPKEIIRKDNLVEVTNVVYMEKKLYRWIPSLINHCFVSFEDFSISYNEVYCEEIKNNFKSACDALEAGKKSSQNQIAGFSNDFINVDVLMDDGTPDVDVPMICDSADDIISGINIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DK37</accession>
    <name>A0A7D9DK37_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001122">
        <property type="protein sequence ID" value="CAB3987115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DK37"/>
    <dbReference type="OrthoDB" id="5988050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12972" checksum="CA024441BB9CF81B" modified="2020-12-02" version="1" fragment="single">MLRDVDEVFLSQLQSNTEENANGVYEPLFLNVKDLNKNDEFDKNMLSGYRYEVLGGTHNFLATKALASKHPDCETFKGRCAPLFVGLSDQEALWVATKHNKTGSFRHDISFQEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DR98</accession>
    <name>A0A7D9DR98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001843">
        <property type="protein sequence ID" value="CAB3991400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DR98"/>
    <dbReference type="OrthoDB" id="5947431at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07381">
        <property type="entry name" value="MPP_CapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019079">
        <property type="entry name" value="Capsule_synth_CapA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052169">
        <property type="entry name" value="CW_Biosynth-Accessory"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33393">
        <property type="entry name" value="POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33393:SF11">
        <property type="entry name" value="POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09587">
        <property type="entry name" value="PGA_cap"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00854">
        <property type="entry name" value="PGA_cap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="517"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="517" mass="58607" checksum="51DE8D28AA3BC8BE" modified="2020-12-02" version="1" fragment="single">SDACLTVRTATNDELLRHGSGRFHAMLVQAYKNKPWNYPTMLSRILRLQVSRNGFGKLTKWYNFIGDYRSHRNVNPNENECLAGGKTKIYNIIETCQNNPEDVSISIIFVGDISFARCVRKYVDHGCNNYNDTMIKVAGIIREADIAVGNLESPFVTKMMLKDRFNGRKKIFLHADHRSAAALRDIKSTVISDTWKDPIFSRKHARVTSTHILKELHIITLPNNTTHATLAPKFAGFDIMSLANNHLNDYGEKPVNFTRNILSNAGIDTIGSNFGSYDSPQRSLIQTKEGIKVGFLGYCYIQSCFSVRKKYKAGPAIYSDHIAKRDVLQLKVTRLQTNIIVYMHWGAEYKLHPNRRQLSIAKYLHSLGVSAVIGAHPHVLQPHSRSTNHLTAYSVGNFLFPRINDCLTQTSASESEIFSSSIYVPRCLIICPQDKLLLDYKNISWNDPTKLSRILRLQITRNGVIGAKYLPVTIKFDHKTKTLQPTLSNDTQWIDVCSTRDEECLRQTSTSKDKVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E0G3</accession>
    <name>A0A7D9E0G3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029786</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003014">
        <property type="protein sequence ID" value="CAB3997064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E0G3"/>
    <dbReference type="OrthoDB" id="188035at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18400" checksum="75BD3C39C83990EA" modified="2020-12-02" version="1">MFWVKISQATAKGDLQKFSPWMVVAVTALGTAVITSFLVFTFILASLLRLPKKSILAVTVLSSARNSSIAIAVIENLPDSVGDKDLMFFPIIFVYLAMVVIINSFGCFMTIKEEENDIEQVMDTLEDRVDSADKLTLAINPLERLHDIPNTNDCVMLPIVQWCTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E285</accession>
    <name>A0A7D9E285_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019684</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003697">
        <property type="protein sequence ID" value="CAB3999893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E285"/>
    <dbReference type="OrthoDB" id="5982845at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="281"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="294"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="322"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="39010" checksum="B5FB21F336CBA3AC" modified="2020-12-02" version="1">MPYNCQLQYRPWKDNPADFMSRHPKPVNFINETENLAELYANYVCSNAIPKAMTREEVKLETKLDPLLQKVVTAISLNWTDPTVERYRRFQDELMVCDEVILRGNRIVLPQSLHNRAIELAHLGHQGIVKTKQLLCEKVWFPDIDKIVEANPLPKERLHLQAEPLKLSPLPEKAWTNVAVDFVGPFSTGEYLIVVIDEYSRYPEVEILTTTSAIPKLDAIFSRQGIPEILKSDNGPPFNGEEFENFANHLGFKHRKITPYWPRANGEAERFMKTIEKAIRAATVEDSPSTPSNSEKDEEIRSRDEKNKSTMKSYSDKRSRAKPNNITLCDTCPPTTTEIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E2V5</accession>
    <name>A0A7D9E2V5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">General transcription factor 3C polypeptide 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A020139</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003557">
        <property type="protein sequence ID" value="CAB3999294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E2V5"/>
    <dbReference type="OrthoDB" id="6021743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000127">
        <property type="term" value="C:transcription factor TFIIIC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004402">
        <property type="term" value="F:histone acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006384">
        <property type="term" value="P:transcription initiation at RNA polymerase III promoter"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044230">
        <property type="entry name" value="GTF3C4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024761">
        <property type="entry name" value="TFIIIC_delta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024764">
        <property type="entry name" value="TFIIIC_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15496:SF2">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15496">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12657">
        <property type="entry name" value="TFIIIC_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12660">
        <property type="entry name" value="zf-TFIIIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription factor IIIC 90kDa subunit N-terminal" evidence="1">
        <location>
            <begin position="26"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="Transcription factor IIIC putative zinc-finger" evidence="2">
        <location>
            <begin position="669"/>
            <end position="754"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="757" mass="84871" checksum="E6D25E7B8B48E854" modified="2020-12-02" version="1">MAIASSKVIQRIDVHHKASNIDGISWSKDNRLAVVTNSFVSIINITGVHADEKKKESRLQIKRSAIAVDHKPEKIDIDSDFSLWRLEPLSVAPYYSTAIIDPALSPTIMKQVCYEDVTCAKWSPVDCDRTGRSVLALLFRTNKLLLYIADKRSLHGWCEILDLSAKHADEMEKGNYFKDKSSLKGELPADARRALGEEKTWKNFTEWQRKKYLLNFTCIEWFPAVVSCLQQANNTMRKFAYLATIVKSGQLFIWQAQLPLVKNHSFMYRAVAGYSSMFYPSCLAWYGESDEQASYLACGNTDGIIKVFLMKIFPTNVGIPDISIVKAYSFCDDPDGITVDCMTWYRKDSKLYLACSKGPHVSLFHTQLMKEGALSKPIKQVITGIHLLNITGLAISPSGMLFSASAEGSVQQFQIGSRVCSTAMDCEVLAGHGYNGVSVCPNGVFMALYENKRKLFHYKKGATAVHGEVAIISLVPKEENVHELMSSASSVVDIASIRNRFIYQELFKADISDTVTLPADLCGFSQAYLQFLWNLLSSDPKFEKCTGRDSIELSTNDTMSSEKSDELQSTYCIEKIEKQVATFAMEKALKFILEYHEGKQRLYNTPVSGDITVKTICHWLVQRNPSGSVVDLLRKVWAICNSAITTSGTEQGTDGTYKYTDVCEEILASNNVSESCMCGHPIPLKEVRFGRCERGHVWPRCCVTFKLLDGTNARVCENCNAHALNRHPINSPYEDWTKHLLDVTSSCTYCGAWFEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EC09</accession>
    <name>A0A7D9EC09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Mpv17 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A019735</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the peroxisomal membrane protein PXMP2/4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005549">
        <property type="protein sequence ID" value="CAB4006591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EC09"/>
    <dbReference type="OrthoDB" id="430207at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061668">
        <property type="term" value="P:mitochondrial ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007248">
        <property type="entry name" value="Mpv17_PMP22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11266:SF8">
        <property type="entry name" value="MPV17-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11266">
        <property type="entry name" value="PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04117">
        <property type="entry name" value="Mpv17_PMP22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="73"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4006591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11423" checksum="05B2ED703BB51131" modified="2020-12-02" version="1">MTKINVDPTINKTLLIASVSIFNEGMAKLDGHSFERCWNEIKLKFWPVYKMDLSVWPAAQAVNFYVVPGQYRVAYVSFVALLWNIFLSYISHKKEDEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJ88</accession>
    <name>A0A7D9EJ88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017962</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006550">
        <property type="protein sequence ID" value="CAB4009717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJ88"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11801" checksum="84DA39CFDF44C9E8" modified="2020-12-02" version="1" fragment="single">ERLGNGETDSVLTSLRSQETSPQSPVMSKKSSNVEQKQKEAKEASERLIQMENEQRVKELEIQKLTAELQLTKQRTDDARKVAALNKSRAEEAERRSQVSDNDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EMZ8</accession>
    <name>A0A7D9EMZ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007672">
        <property type="protein sequence ID" value="CAB4012887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EMZ8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="224"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="242"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="31528" checksum="82B0FB4535195DCA" modified="2020-12-02" version="1">MSKAITQNRNESESNGKRDEISRSTEELNSIEGDLNLTESELNQNNSLVNLTKPSIKGGQARGYCKLFENGEVSIRWYSNSKTLTVKGEKADEIKEKLLNFDRKLSGEVKVYSESPKVANILEPADRNLHSRKLDALAEEISTIKENKENAAYGILILEETVNELKKEKYELNRENEKLKEKNKNLFQSLSEVRAKVIELQDESHNCPEANSARISITSRKKKKMEDLESENKNLRATTRTLQEDLDKSNREKREFTKVKKRSENVSITADTTISC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPP5</accession>
    <name>A0A7D9EPP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Neurocalcin homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A018030</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the recoverin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008148">
        <property type="protein sequence ID" value="CAB4014091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPP5"/>
    <dbReference type="OrthoDB" id="191686at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000009">
        <property type="entry name" value="Visinin-like protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028846">
        <property type="entry name" value="Recoverin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23055">
        <property type="entry name" value="CALCIUM BINDING PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23055:SF178">
        <property type="entry name" value="NEUROCALCIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13833">
        <property type="entry name" value="EF-hand_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00450">
        <property type="entry name" value="RECOVERIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="6" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0519">Myristate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4014091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="22188" checksum="F30973526C19840D" modified="2020-12-02" version="1">MGKQNSKLRPEVLSDLKEETDFNEHELQEWYKGFLKDCPSGHLTVDEFKKIYGNFFPYGDATKFAEHVFRTFDVNQDNSIDFREFICALSVTSRGKLEQKLKWAFSMYDLDGNGFISRHEMLEIVKAIYKMVGTVMKMPEDESTPEKRVDKIFRQMDKNFDGKLSLSEFIEGAKSDPSIVRLLQCDPAAGASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ES32</accession>
    <name>A0A7D9ES32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012068</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009359">
        <property type="protein sequence ID" value="CAB4017009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ES32"/>
    <dbReference type="OrthoDB" id="5962743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="19255" checksum="E4881435E9729EB2" modified="2020-12-02" version="1">MYTRAVAAFRASGSIHPVCPTHQKYAKLCVVKDTMKDNYGRPFFVCSERKNPCKFWQWGDVFEGPRPLCQHGMVCCERKVKKDGPNQNRLFYCCPKDDSCGFFEWKQQGPRVTNTGIVLFSNPLQYQYMIEETGETFNSSKSNTKEAYDEFRRFGLTSELDKIDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EUM1</accession>
    <name>A0A7D9EUM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC100197852</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043014</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008794">
        <property type="protein sequence ID" value="CAB4015651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EUM1"/>
    <dbReference type="OrthoDB" id="5985905at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="564"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="570"/>
            <end position="580"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="600" mass="69319" checksum="5898051232B5AE10" modified="2020-12-02" version="1">MLWSQELEVDRVKVSCGNENSLVGRVDVEVPTEVVNFSNTTEKGTPNNSRCSISAVIDCTRYSSLKKLVLVTGYVIRFIKNVRKRVKKQDDLVCEDVLTVSEYNAASHMWIKDEQLLMKEQDNCANLCASLRLFEDKDELLRLKGRFANTSLKHEEQHPVILRSKNDSYFTRLVILDAHEATLHHGVETTLAHIRRKFWIVKGRKSVKEVLRKCVTCTRYQGRPVRAPASPDLPHFRVDHLAHAFQFTGLDFAGPLFVKDGLGNNKSYILLLTCASSRAIHLELVPDMSVHGFLRGFKRFMARRGIPDLVINDNFKTFKSAEVKKFMTLQSIQQYFILPASPWWGGFYERLVRSVKGCLKKTLGKAFITFEELQTILCEIEVAINNRPLAYVSEDDLDEALTPFHLMHGRSMSTGKKVLTTDVVSVMSLEHCKKRLFHLRKLLKDLWSRFRSNYLNELRQMNIYRKEKGGKARMIELGDVVLIKDDDPTPRTQWRMGKVLNLVKGRDEKVRGAKLKVLSKTGKQTYVFRPIQRLIPFEIVETSRNDRRDDNSEGQLNETIVELPEIENSDENRKQRNDGRVRRKAAIEGQNMRRAREQYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EY33</accession>
    <name>A0A7D9EY33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049624</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010528">
        <property type="protein sequence ID" value="CAB4019564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EY33"/>
    <dbReference type="OrthoDB" id="5988694at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006758">
        <property type="entry name" value="A32L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04665">
        <property type="entry name" value="Pox_A32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="361"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="202"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="363"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="42890" checksum="048B17B64E3B55E2" modified="2020-12-02" version="1">MPIVGMTGSGKTQFLLNMLETEYNRVFDYIIIICPTIEWNMTYINWTHISDHGVIQIPCSQEMIDLVLKAVSTIFRGTQTLIIVDDCAASQDVKKRVSELVRLAFSARHYNLSVIVLTQQLSSVAKPFRENISRLVTFYNPSRRDTKVITDDYLSGVPQETITEITKILKDEKFTALDMMGTESEEEIFEAVKEVEEAAKVPQKKAKSTARKTKSSVDKSQTESKRDKLIELSRDGVIEKSASFIRKSNKDVVDRLYHEYESQRMSCASDFLSTLIISKFASILGSFGAVESSEKLSEELLSDKLLKDDVAYLTRTISPNIPFIGLISGGCTTAKHVVTHKWNKKEEPEEVSEEAKHLILHTECQTPENQSSGEEQNLKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HFB1</accession>
    <name>A0A7D9HFB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Thap domain-containing 9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A072136</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000559">
        <property type="protein sequence ID" value="CAB3982964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HFB1"/>
    <dbReference type="OrthoDB" id="6760869at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="3">
        <location>
            <begin position="185"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="4">
        <location>
            <begin position="349"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="433"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="89"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="442"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3982964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="454" mass="51214" checksum="1FF53E1AE9209608" modified="2020-12-02" version="1">MELLPLDMSKVVCDDDKLSEKQEGIKVTDDSSMINAELGSGIVTTSTREKRKHSEESDYIKEVPIPQKRACMGIKHDHTYSVSSHCRLKQKADNLLDKAKNLKRKLKTSHMKSNRIKRKVNSLTSVVSELKKEKLVSNDCASILETTFSEVPKELMKRLVTQKKKKNPGLPHPSVISSWYTAVDGEPGFTKEALTALKAKVLAGKRDGQEVLCALMLDEMSIRKHVQWDGKKYRGFVDLDTGIHDDSLPEATEALVFMAVSLNSNWKVPCGYFLVNGLTGEEKVNLTKDCLTKLHEVGVKVVSFTYDGPTTHQAMLKLLGARLSADNLQVYFPHPCDNNEKIYVFLDACHMIKLVRNTMSDWKVMKDSDGNTIDWKFIEELHKLQETECLRLANKLRSAHVDWKPQKMKVNLAAQTLSSSVADALEYTVKKSEGKQFQGTNQKDELSVREEVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HN53</accession>
    <name>A0A7D9HN53_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001422">
        <property type="protein sequence ID" value="CAB3989039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HN53"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="8773" checksum="9865A5AFA5ADC0AF" modified="2020-12-02" version="1" fragment="single">MRTTADSDSATLESDVENSYNTDNEVETDSASESDSDNVDDTCSKVGDEYESDLWAPFNAETAQQSLSEFEALTQNFTAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQ69</accession>
    <name>A0A7D9HQ69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">BTB POZ domain-containing 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A015699</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001721">
        <property type="protein sequence ID" value="CAB3990757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="9979965at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.820">
        <property type="entry name" value="PHR domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012983">
        <property type="entry name" value="PHR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038648">
        <property type="entry name" value="PHR_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08005">
        <property type="entry name" value="PHR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3990757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1583" mass="178675" checksum="1AE00E75B0916176" modified="2020-12-02" version="1">MASKYHDDWQSSKQTVLQRNAYMFDNELMSDVSFTCGESSRIFHTHKYVLATSSSVFFAMFYGDLAQKESPICLPDADEESFKEFLCYLYTDDCKITAENAIGILYLAKKYLMTSLTEKCCKVLEASIKPDNVFMVLEQAIRFDEQKLEAKCWDIVSKKTEDCINSEAFYNVGSHTLNVLLKSETLTVTEVELFKAVLKWVDGECSRQGINIDEDKTARRRVLGDSVYEIRFLEMSLEDFTKYVSCIHGLLTETELISIFQKFGGLDVAGLKWKEQKARRPYIVGFSRFDVANIFDWKWSYNGSKSDALTLTVNKAILFHGVRLFGDSSGSQYEVKFTVKDENVTGTYTSRQDDDGVWGYDVILPQPLTLQPDEVFTIVSTIDGPECYGGGKGKSSVTDDGIVVTFNNASTFSTNSTDKLIVMIFISMASMRFNGGAECAVPGSSDVSFTCGESSRIFHTHKYVLATSSAVFFAMFYGDLAQKESPICLPDADEESFKEFLCYLYTDDCKITAGNAIGVMYLAKKYLMLSLTEKCCKVLEASIEPDNVFLVLEQAIRFDEQKLEAKCWDIVSKKTQECINSEAFCNVGSHTLNVLLKKETLSVTTVELFKAVLKWIDGECSRQGLNIEEDKTARRRVLGDSVYEIRFLDMSQEDFAKYVSSTRILTEAEVISIFQKLNGLDVTGLKWKEKTKRRPYIVGFSRFDVANALCGCWSYSGIKSDALTLTVNKAILFHGVRLFEKDNDDEMITIIATIRGPTSHTGGNGKSSFYSSSSKKTVLQRNAYMFDNELMSDVSFTCGESSRIFHAHKYVLATSSAVFYAMFYGDLAQKESPICLPDADEESFKEFLRYLYTEDCKITAGNTIGVMYLAEKYLMTSLTEKCCKVVKESIKPDNVFMVLEQAVQYDEQKLEAKCWDIISKKTRECINSEAFCNVGPHILKALLKSETLTVTELVLFKAVLKWVDSECSRQGINIEEDKMARRRVLGNSVYEIRFLEMSQEDFMKYVSSTEILTEKEVISISQKLNGRFDFADVLDGKWTWNNNGRVDALTLTVNKTVLFQGVRLFGDSSGSQYKVKFTVKDEQVTRTYTSEKDNDGVWGYDVMLPKPVSLQPDEQFMIFARIKGPQSHRGKNGKSSVKLNDIVVTFSSNSSSSNERLCENKTNHGTIIRVTNAYMFDNELMSDVSFTCGESSHIFHAHKYVLATSSAVFYAMFYGDLAQKESPICLPDADEESFKEFLCYLYTDDCKITAGNAIGVMYLAKKYLMSSLTKKCCNVLEASIKADNVFLVLEQAIRFDEQKLEAKCWDTVSKKTQECINSEAFSVLKWPQCNALLKRETLSVTEVELFKAVLKWLDSECSRQGKNIEEDKITRRRALGDSVYEIRFLEMSQEDFAKYVSSTSILTEAEVISIFQKFSGLDVAGLKWKEQKKRRPYIASFSRFDVANALCGCWNNIGRADALTLTVNKAVLFHGVRLFGDSSGSQYEVKFTIKDENVTGTYTSEKDNDEITAWSHEPGLPAKQALAGLVIFIPPNYVASCLFSMIRAFAKDVNKWQPIDNISFDIIITVLNKIDSHSPASGSTTKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQX1</accession>
    <name>A0A7D9HQX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110055849</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001348">
        <property type="protein sequence ID" value="CAB3988584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQX1"/>
    <dbReference type="OrthoDB" id="10048659at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31912">
        <property type="entry name" value="IP13529P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31912:SF34">
        <property type="entry name" value="NOTOCHORD-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="767" mass="88296" checksum="8EE055244FC1EC34" modified="2020-12-02" version="1">MPWQCSICGEFTADTRERLVNHIGRCHGNDPNFHIVCGLDGCTTSFKKYFSWRKHLTRNHAEQSSQPEPEGNEDALNQDQNRHINRDELNTEDNARSAALYILKIQEQCSLTHSAVEKIIANTTGIVRQAISTVEMQVESCLRESNIDQQTIAKLKEIFGEDNVATNPFHNLETTTQQLAYFKTEFQLKEPKRIILGQTEVFRRKNGIIRQVQSNDEAHYIPLLESLKNLLSDEFILNEIESPHISTDGLIKDYCDGENYKTHPLFSLKPTALQIMLYYDDLETCNVLGSRDTGHSLVVNGQQRTIHGSIAYTSADNLGAQALGGFKESCSAHRPCRYCLGTLDEMKSKFHENDFVLRTKDGHDKQCDEVLTHGEHFSKTYGINRKPVLNESKYYHVIGGLPADIMHDILEGVLQYEVKELLKHYIKVEHLFTLEHLNHQIASYDFGYYNEKNRPSQITELKLSSADNSLRQHAVQMWCLGIHLPLMIGDMIPTDDAHWNLFIKLLEIMSICFSPTISADQMAYLQILIQDHHMEFCRLYPECSVIPKMHFMIHMPTLMLRHGPLLRAWCMRYEAKHHYFKHLSTVIGNYKNLSYTLAMRHQHWLCYMQQTGNHESSFLEKGLEIHSGSKVFAGDLRYFNELHQKVDQINEITEITKPKSISVHGTTYKVGCVMWVGLDEKEMPSFALVKDICVVETNLSGIWFVTEVLHTAAFSKHFNAYEVNNTKHLSVIKQQELVYPLPLHIITIKDQEDEKHFVCPKYQIPSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUP2</accession>
    <name>A0A7D9HUP2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DDE Tnp4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A006544</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001733">
        <property type="protein sequence ID" value="CAB3990838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUP2"/>
    <dbReference type="OrthoDB" id="2668416at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE Tnp4" evidence="3">
        <location>
            <begin position="13"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3990838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11852" checksum="79C2E290C9238900" modified="2020-12-02" version="1" fragment="single">DLNREICGVEMPPVILADPAYPLLSWVLKGYPRNEATRSQRVFNYRLSRARMTVENTFALKNEFLPDWADAEVLIEEPILPIYETSAPDAELFRDALAEYFTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HW86</accession>
    <name>A0A7D9HW86_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082371</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001640">
        <property type="protein sequence ID" value="CAB3990321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HW86"/>
    <dbReference type="OrthoDB" id="6358435at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031593">
        <property type="term" value="F:polyubiquitin modification-dependent protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd23519">
        <property type="entry name" value="Abraxas-like_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023238">
        <property type="entry name" value="FAM175"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31728">
        <property type="entry name" value="ABRAXAS FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31728:SF5">
        <property type="entry name" value="OS07G0540200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21125">
        <property type="entry name" value="MPN_2A_DUB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02051">
        <property type="entry name" value="PROTEINF175"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="262"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="314"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="315"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="331"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="356" mass="40777" checksum="935C3E4C4B20085C" modified="2020-12-02" version="1">MEIQISGCVFSSLFLELANSQGDIEGFLLGEIEDRTTSTVSDSQDVSVKHHRIFAVQEIVVCQGLFSFYDGVGRIHVEKLDRILGKKKQVALGWFKFRRNTRLCVSMREKVIHRNLLEQFGIKDSENFVFSVFSSQHAKNLATHTFRYSAFYCPKHYNRVFNGVPIQIINLGNTAQTEYKQDIAATSSTSKQYQNVIGSFSDEFLDNVGQLQQVKHARSMYKNMLGKLKGLKEAVHKSESQLIGLSDNIEILKHQLEKAMQEKRLKPEDTTSEDDLILLDDKSEQDLMSFEDLETEDESSQEATKHVVVAKHIYTHTTQETNSAETSVNHTRPERTNYANEDGHRSYDHQRKSPQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HYX6</accession>
    <name>A0A7D9HYX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002323">
        <property type="protein sequence ID" value="CAB3993747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HYX6"/>
    <dbReference type="OrthoDB" id="5977605at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="34836" checksum="7BE5C95A3190E7D7" modified="2020-12-02" version="1">MGKPKQADPEPELRKGLLYEMLFFMFLQGMDMGAAFNIWLEGRQAYDAYGKILNYKNTTNTTNPYKPKAVSYCTTTEWDMEKLHELYDLYNTVLMIYLVCLALAGLVFFLHFCMWLIAIILSLTKIDFMTEHMPQLVKGKAIFAVTESFFQDIPISCIAIELYLLRRGRDGLICYLCTHIPTCTKADHLDDLLSTSSGKLSFLLFAVALTTTWKGLTFMFRFTRTGVLDIFIIRALVSLFAAGIYNIVILTPAMVLLKYRYYTLPGVTKGFFADIIDRVMIIGALMWVIVLMGGCCCPLMSMIKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3D9</accession>
    <name>A0A7D9I3D9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Synaptic vesicle 2-related -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A069581</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003563">
        <property type="protein sequence ID" value="CAB3999318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3D9"/>
    <dbReference type="OrthoDB" id="6612291at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23511:SF5">
        <property type="entry name" value="MAJOR FACILITATOR-TYPE TRANSPORTER HXNZ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23511">
        <property type="entry name" value="SYNAPTIC VESICLE GLYCOPROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="69"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="134"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="189"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="220"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="292"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="347"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="377"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="401"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="435"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="465"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="553"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="485"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3999318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="608" mass="67945" checksum="1FD4CC5EE67979B7" modified="2020-12-02" version="1">MNLYVPFIWLKASSEKKKSMQTRVVKYKSIFENDDVTGTAGFRADFFKSRSIDGILDGIGLRLFHLKAFLILGLLNIVNSLEDFILSMILPSIKSAWNISSFHAGILTISISIGMIVGCWFWGWVCDKYGRKRGFIGSATFIVVFAFASAFSPNYYWLWISLFLLGFGISTTFETYVMTMELFPPKYRTMFSVLNSVFWTLGFLLSAVTSFELSVIGYRWTLATVSFPATISLVGIAFLSETPYYHLAAGDEQKALNVLQNFAPEMDLSNTKLNRKNESKNADFRRLFRSGYWKITVCICIVTFSLMSTYYVLMCTASDVVSRENTMSTINSHGEQDKLGTSSKGNLYFTMTWMNIPELMIIITVAIGCYFFSVKNVALTLILLTAMLQIGVLFFPNQKTVLLVGTMLSRSLVVSTIAVVYVYASLLYPTENRSIAVGACVSMGRVAMVAGPFVLHVEDKVRHAEDKVRGAEDNVPGAEDNVPGAEDKVPDAEEKVPDAVDKVPDAEDKVPDAEDRVPHAEDMVPHVEDKVPHAEDKVPHAENKVPHAEYKVPHAEDKVPPVEDKVSHAEDKVPHVEDKVPHAEDKVPHVEDKVPHAEDKVPHADDKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4H5</accession>
    <name>A0A7D9I4H5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Tyrosine-protein kinase</fullName>
            <ecNumber evidence="14">2.7.10.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A041059</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13 14">
            <text>L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10596"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:20101"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:61978"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.10.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the protein kinase superfamily. Tyr protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.10.2" evidence="14"/>
    <dbReference type="EMBL" id="CACRXK020003094">
        <property type="protein sequence ID" value="CAB3997425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4H5"/>
    <dbReference type="OrthoDB" id="28230at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004715">
        <property type="term" value="F:non-membrane spanning protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01238">
        <property type="entry name" value="PH_Btk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000052">
        <property type="entry name" value="Tyrosine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000053">
        <property type="entry name" value="Tyrosine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.505.10">
        <property type="entry name" value="SH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.40">
        <property type="entry name" value="SH3 Domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050198">
        <property type="entry name" value="Non-receptor_tyrosine_kinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000980">
        <property type="entry name" value="SH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036860">
        <property type="entry name" value="SH2_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036028">
        <property type="entry name" value="SH3-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001452">
        <property type="entry name" value="SH3_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001562">
        <property type="entry name" value="Znf_Btk_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24418">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00779">
        <property type="entry name" value="BTK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00017">
        <property type="entry name" value="SH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00018">
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    </evidence>
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        <source>
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    </evidence>
    <sequence length="617" mass="70169" checksum="ED2C0FFA5E64ADC8" modified="2020-12-02" version="1">MPYFESGDDRELKVDLMLKRSQGKKKILTAINYKERVFVLTPKQLHYYEGTTEKRGKIKGTVELIKVKAVEAVDVQAFDKPHCFQVVYHEYILYIIANNEAQKSDWIEAIQEECRKNKFLLSYFHSGAYMNNQWTCCSKSEKQGSGCQETFISLEKKGTDFSDKPLPPLPGNTASEGPNVVALYSFRGQETDDLSFEKGDEFTILKSEGEHWCLAKDKYGRTGYIPVNYVRQKGGLGTEVWYFGDIMRHVAEEMLLREGKEGTFLVRNSSKDGLYTLSLLHGDNVKHYHIKPDENHFYKISTRHCFPTIPELIEYHKLNSGGLVTRLRQPPASGATPPTVGLGHDKWEIDRSEIHLGNEIGSGQFGRVFRGVWKGSIEVAVKMMKPGTMSEEDFIEEAKVMKLFHHPNLVQLYGVCSKKPIYIVTEFVPNGCLLNYLRKKREMVLRKISVTAEMVIHIASAMAYLESKNFIHRDLAARNCLVGFNNMVKVCDFGLSRFVIDDEYTASEGTKFPIKWAAPEVIMYSKFSSKSDIWAYGILMWEVFSAGASPYPAMGNSQVVNYIMSGERLGKPGNCPPGIYDVMESCWCQDADLRPTFGKIFRKLKAMLGEDYADTFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGR1</accession>
    <name>A0A7D9IGR1_PARCT</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
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            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
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    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
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            <begin position="19"/>
            <end position="51"/>
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    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
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    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005633.1"/>
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    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="20836" checksum="78272BB3BAE1768E" modified="2020-12-02" version="1">MVKSRAELFAEINVTPPAKDSDNESVEGKEDTPERETKVGEKEEQLQAEKPPKKKRKTKKKDDANKENRPAVKDKLATVIGVGKAPRLPLSPVGNIPLPTTASTPAMEENLHPTIPSTPNASNNLPGRVNTISEDLAPLTTTPNFSNTLCGVQNIAHGGITNTSQDMIVPSTPDVSNCTLLDLDSIVSEDLAPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHZ5</accession>
    <name>A0A7D9IHZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087818</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
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            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006006">
        <property type="protein sequence ID" value="CAB4008054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
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        <property type="entry name" value="BAT2_N"/>
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        <property type="entry name" value="PRRC2"/>
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        <property type="entry name" value="BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="LP18708P"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="BAT2_N"/>
        <property type="match status" value="1"/>
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    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="296"/>
        </location>
    </feature>
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            <begin position="449"/>
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    </evidence>
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        </source>
    </evidence>
    <sequence length="2142" mass="242001" checksum="C2D916B2BBD38650" modified="2020-12-02" version="1">MSDRVGLKTKDNAAKKFSSLNLNQTYKGTKVESKATTGAPRHGLQSLGKVATSRRMPPPANLPSLKSENLGNDPTVALVPSGGGGWGSGKDKEASTTTTTTNKNASQGQATPAQPQAQQPSKATDTSQKATTGQQTNTGQTTSTNQTSAATKTWASSSSSVAGGQEKTSYPHQSQYFNQEFPTLGGGNSKDKLPEERASHPPYGQPPRNMHEPPWMDKGGSGPPPPKSSFALYNGAPYPGPPPRSGYGPQIYHRDGHPINSHSQDFPYMGQSRPPNYATHPAANQRGHPGSRITAQKAAKHMVKLEDSPSGYVRPSVVNEEDIRAMDSEDVEDGGWAGAQEEIDYSVKLNFDDDEPPSPGETKPAGPITEASQQRERVVNGDTNRTQVHGKRPLEPRRQAWAVPAEGHFQPQWNDPPKQGPYNMQGQYNAQRQWAGHFPPPQQRNAFPMGPPPGPQSPPGGRQQPQDQSRTGPTSANKPSSERSVSIEQARQRKVMEEDERKKQQEAASREKLRLLDARTRPVHIQTHEASVREQTGPCSPVSPAGSDAPVRRIMRRKDSGSIGDDDGSSVKSVESVGKEEKKVPENKNQTNKPRELRKTSSSDLQEERKSPALKTNDGERINHQEKDKIERKSAVTKDAKETSIEKSKVVGDFTMQKHGENREAAKVPTGDGKDIKKHVEDKEKRPERKSSESRPRSDEAFRKKILSETDELHDNADSESKKENLDKRGSRLSSKSDRGSSESVRSRDSIEKRKEDRRRPEDIKRKREDFERNEQPLNEQGNRAPNRDRLFSGRGRGTLGGKSHLRGHPKSYSHGRIDRTTTQRRTRTRNDSKDYADDEIKTVASEEKGRVNEKTEERHWVGGDRREPGNDRSVRRQNDGNRRQPDSDRQQRDDDRRQQDDSQRSNTEKRHRDGDRRNVEREKREPDDDKQQQTGDRRRKENPESRFYDSGRRNERNTRERDTRDDRSYKGSGRLPYRPQTSGEPLGRAERFRDKTKNRGGFGVPPQPKEQQKKNENEEKSKDESNSAKTKPISSTTESKKSDENETGSFKGKTSESVFVPPRTENWDVADSQDTIAKEVKTEGTLAPIQKTAAEVKTEKPTTTEGFSGDKKPTEKEVLEKPTDGKKQQNNKGDKVPTTAPTKNDQYESKTGERRERTVPNKEREQQNFSKSDSGDTKVEKYESKKGERRERIVPNKEREQQNFSKSDLGDTKVEKRRETEIYRDGRHRQDDRRPRPRDETRREQPKRNDERKAPVKSGAENWDSEINSRAEERKDVQRENRDATRQSDRTQDHTDRRNNSYSRDRKDQRDQRDQDKPDQRNRNERNRTDQRERTDRRDRTDQRERMDRRDRTEQREGNDRRENTDRRDRTEQRERVDRRYRTEQSDRRDRTDQRERIDRRDRTEQSDRTDRRDKIKPVSNEKLESNVDKPRKPGVKGEEQNKDIHPNESIPQKQDANRESERTEKQDEYLSSMKKQSDRFTVGTLSPGGDRRRYNETRRGDASSRRGSHGGTRGMRGRGRGRVISSGKPIGKGSAASKNDDENDSEDYHSAHSSVDSDESDSEEVFDKQDDGRRDDKKPTRSYYSSSRSRGSYSSRGRGRGSSQITRSPRKQPEKPPRFQRQEARSASRGRGKSNRGGFSSKDNWDENISKNRDSRNSDEGPLPKKRPPDTSYSNEKDSDGSYRGRKAVRGGHSGNKNSFLAKKQQEVVEGSSRKGGGRFGAKSTIPAALTTHGRRAKNEPAPADGDDNLEPPKKNPRRTEPQKVGIEHIDMSNIAGFIDIDDIAQPASEFEPASPQSDFVEVKSKRTQKEQRERAREEEERKRRELEKMMQDAMLKPKTNKSSLQNKQHSTSKPPRFARNTGVPSNVVSTLPEGNTLPSSVTPVAIPENNTITALASANVEQKRVSPLMLEKPSSPPPPPMFNAWTKPLSITPAKPPNEASAELPRITQPDPLAVGSGKPQRASGAQPKAEEPGLQIQVTLPATFQLAGQRDIGSQNSESRMFSRVDETDGGEPNVNSSLKKTSDENIAEQTESKKTDGTQSTGSNTQKEESKMNTHNVKTTESSVSDKNSENNKRQPTGNNWKSSRPPRFEKSVPGKRNTDGRRLKADTKDNGEPKSQPDTDKPKEVRTLAFIGLFRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IK07</accession>
    <name>A0A7D9IK07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015237</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006496">
        <property type="protein sequence ID" value="CAB4009567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IK07"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="95" mass="10039" checksum="86B84C161247CAEC" modified="2020-12-02" version="1" fragment="single">LRFDWFYDQSIVLFFADCAVELAVELAVELAVELAVELAVELAVELAVELAVELAGELAGELAGELAWELAGELAAELAAELAAELAAPLKLNPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQQ7</accession>
    <name>A0A7D9IQQ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069378</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007890">
        <property type="protein sequence ID" value="CAB4013445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQQ7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="73" mass="8377" checksum="299364CDFE8EF936" modified="2020-12-02" version="1" fragment="single">RNLALFDYSDGKYPRYQVDKVLPYQFEPKLGLQTSDSGDESDSEEQNESSDEDITMCLRSKMLGAFRIEAKGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ISP6</accession>
    <name>A0A7D9ISP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A046368</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007480">
        <property type="protein sequence ID" value="CAB4012359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ISP6"/>
    <dbReference type="OrthoDB" id="5945834at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF53">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4012359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="28376" checksum="95E2EF17A2D3B8A9" modified="2020-12-02" version="1">MISNMVFLISLFLFGMEVECKTVAKQLEITPRSCLDYLKRGFKSDGYYTIYDFKTDNCITVYCDMTSEAGSAWTLVMSYALKNRHMDQIARKTMQQDAPVNEHSPNWNLYRMSLSQMTHLKSQSTHWRSTCSFPTYKVDYTDYVRAKFTHFDIMTFLGDGICKKVEYINIRGHQCAQCTSKWWQQNSRYSPHIDSPSNGCQFVPTQGSVSSENNFGYYIEGVINKKFRCSAGPLSTTNWWFGGYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUV3</accession>
    <name>A0A7D9IUV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039562</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009605">
        <property type="protein sequence ID" value="CAB4017567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUV3"/>
    <dbReference type="OrthoDB" id="3936150at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12085" checksum="F4D05D746631347F" modified="2020-12-02" version="1" fragment="single">MATEELTRVLGHPGKFQVLLTALLSLNNVFVCWNHLGMAFLAAKTKHHCTVKNSSDIGHLVPLVKKNGKEQWDGCKLYSKYNSSEKVECSSGWTYYLPDREQTIISE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J437</accession>
    <name>A0A7D9J437_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Putative nuclease HARBI1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Harbinger transposase-derived nuclease</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A074499</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Transposase-derived protein that may have nuclease activity. Does not have transposase activity.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011493">
        <property type="protein sequence ID" value="CAB4021545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J437"/>
    <dbReference type="OrthoDB" id="5978645at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026103">
        <property type="entry name" value="HARBI1_animal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02086">
        <property type="entry name" value="PUTNUCHARBI1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00030126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00045850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4021545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="415" mass="47943" checksum="7B1584C16E8A4E1E" modified="2020-12-02" version="1">MAPNEMERRKVLAWFFYTRMKEKRKTIANYNGKPVCVPWLRSIKRRKMENLQAILAGAFYPRIREVWMRPRSSAWFEMVETYFTDDQWYDNFRVTKGTFAFILSKINLDISHKDTVMRNAVPAKRRLAITLYFLASTAEYKTIANLFGVSAAFVCICVKEVCHAVRKRLPTVVSFPEGENLLQIIRRYEEKWGFPMCAGAIDGTHIPVLAPSQSHIDYVNRKGQHSIVMQAIVDCYYLFRDIVVGWPGSVHDAHVLSNSSIFEKANSNKLFQGIPSKLIGDQNIHPLIIGDPAYPLLSWLMKPYPENANTPRIERVFNYRLSCARMTAENTFGRWKGRFIRFTKRVDIEVSCLGSIVAASCILHNICEVQNNAFLPHWELEHVHDEPVMSVNDHNANDAVDIRDCLAQYFILHPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGF6</accession>
    <name>A0A7D9JGF6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000517</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015482">
        <property type="protein sequence ID" value="CAB4028427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGF6"/>
    <dbReference type="OrthoDB" id="3049395at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="260"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="365"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="219"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="278"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="314"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="381"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1230" mass="137724" checksum="D88F488C749D9421" modified="2020-12-02" version="1" fragment="single">MSSNVSNICRVDQSQQDVNKCPDCNFVSRSQGGLAVHRSKCKNVVILQNVDCVYVERSFPEGKPIVCCLCDVSIGSIANFRRHFKSKHKKVKLMESARCSLCNDFLKDGRGAGVHLKRFHQIGSKDDYPISPTPIISSTNKPTISVHRKKNISKIKSLSKSPARFTTLNPNPFTTFLLLPFIHEPFTSHPPPNFTQTRDESNSYSPPRPSSPVVFTHSPDPSTTPFTHNPSPNPGVSQPRHNNQIWLEAEVVLSDCTNVDSYVPSQQDDLESEVAFSGRTNENSDSPSQHANFDPSVSLSGRNDGNSNTNTTESVHSSSEQASSNTSEFVRKWSNRISTTESFDDFCHKCDDYANAVVLEVKSSGANNSNRCGRPVRNARNRPNSRLPNPNRRPLISNPIQAGRIQTLFRLSNKRAARKILQDNNITYTGTKDQAQEYFTDTFSTSTVDLNELVSSLSDNVPSTDIDQSLMDQMSPKEIKDKLKSMSNSAPGKDKVEYRHLKLVDPDCKVLSLIYNKCLEEKKIPSSWKQSSTILIYKKGSSDDPSNFRPIALMLCIYKLFTSILAARISNFAINKDLISNEQKSAKPSEGCHEHSYTLQSVVADCKRNYKNCFLAWLDLRNAFGSISHDAIYSTLSHMGFPESLINLIKDIYTDSSMVVRTGKDEETDSIPIRAGVKQGCPVSPVLFNLSTELLVRVVKSRCNESQYIPFQLHGQPVYVLAYADDLVLMSRTRDGLQSLLDDVSLAANILNLKFRPDKCASLSLTCNKHEPSRVGDTTFKVQDGVIPALLKEESYRYLGVPIGLLYDAKDMNTITEKLIADLEKIRDSLLTPWQKLDAIRTFIQPGLTYALRTCPVTCKALEKYRKKTGLQDPFNERHIQSVVHAVKILSVSDPFVSNIAKNELKSVVSRCLKREAENDEVDQFLSGNLDGNFSNHMSCGNGQTLWSCCCISACALKVKVKSASENILISVDNFQTATNSKGVASYLHRSMLKRAFKLKSLPDQGKVARCLQSTKFPSTNSWCYDGTGIRFCDWRFIHRARTNTLPTNAVKSRFANGNTKECRRCHSNNDSETLPHIICHCHPNMNTITARHNKILERLSTVIQSGTYSIDQIVPDAPGNNRPDLVITDGNKVTIIDVTCPFENDEDALRLAAERKEIKYNYLVDHFNKSNKQAKVFGFVVGPLGAWYPGNEKVLDELNVSLRYRTLFRKLCCADSIKISRNIYVEHLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHH0</accession>
    <name>A0A7D9JHH0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039662</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015926">
        <property type="protein sequence ID" value="CAB4029074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHH0"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="14424" checksum="FD386303942913B6" modified="2020-12-02" version="1">MKSSPAQRLLNRRARTLLPTTAKLLQPQSIDSGTTVEKLAERKRQQAKYYNRGAVDLNPLDEEYEVRIKPFRLGRMGGSGGQMSPSKEMGSNEARTEMTCLPAAEDNGAVRRSGRARKPPSYLKDFVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JSX9</accession>
    <name>A0A7D9JSX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020586">
        <property type="protein sequence ID" value="CAB4034979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JSX9"/>
    <dbReference type="OrthoDB" id="5983179at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="284"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="321"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="327"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="41999" checksum="6C02FDB6DE263DD9" modified="2020-12-02" version="1">MKSLARSYIWWPKIDKDIEHLAKSCPGYQLQQNEAGKVPLHPWEWPTTPWQRIHLDFAGPFLGRMFLIIVDAHSKWPEVEIMPSTTSTQTIDRLRTIFARYGVPAQVVTDNGPQFTSAEFQLFLKTNGIKHITTAPFHPATNSQAERFVQSFKHAMKFEKQSASQLKTNMAKFLLAYQNTPHSTTGESPSVLFLGRPLRTRLDLVKPDLQRKVMNRQIDQAGRKGHSPTRQLSIGQTVMARNYSGKDKWLPGIVRAQTGPLSYEIKVGPNRIWRRHIDQLRASSVKVNDQSDDTAEPHPELGETGQNIAPAEDIDAEPDIELATNPPAVQQQETGRATTGSEQRYPTRSHQPPERWGLNCLIRKLFKKTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K1B1</accession>
    <name>A0A7D9K1B1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084576</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026032">
        <property type="protein sequence ID" value="CAB4039903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K1B1"/>
    <dbReference type="OrthoDB" id="10644963at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="236"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="337"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="240"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="301"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="337"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="402"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="445" mass="50119" checksum="05E577F04F273519" modified="2020-12-02" version="1" fragment="single">MSRFQEKENAIPSKRTFSEFDDVGLDDQGNEFKRLKTMQNDDDGDDDDQLIGNLFNCDEDDFNYQDEDDNEFEDNNEYAQDPEFDFDFNIPSPRSPEYLSPNNSPAHFTDDIDIDNNIPVSEAFPEAKVSQNECPLSTETNLQQSQIQGEELQRLPADDLQANCEQSQVPADDLRTKFEKSSADYVLVLEEIADTLKTLDDDFLQNVLGKEKYDSYKKSQIARNRLRAENRRLSARMKQRSLSISQNQNSTLNRNASLSQNITVNGGQSTPYNTSTRRVSDDSDFPVCGESFFDESPPVSRKSSSMLQQFRDSDDSQRNYTLPQDTANLQRNSMLQPAKESSNFATPVSSKWQTSSPAFQNQDLPDIIDVEDDEIPPRCPGPNLSKSSTPLAFNSRGCEQVTPRTGSSSTSTIRNMGTNERSSNAGPRKTPPKKTGNSLPDDGYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K2Y2</accession>
    <name>A0A7D9K2Y2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017548</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025027">
        <property type="protein sequence ID" value="CAB4039165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K2Y2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="19461" checksum="51F90026DC07B5EE" modified="2020-12-02" version="1" fragment="single">MENLGIGWSGDFNSLKQFVNDALKLVGEWSQPGGDRKVFTFGNSSISWRKSKSFLQLEGEESITIKKKICELMLNGEITSQRQTHSSSSPEMSTEEMESLRTGQLINSEAIQSLAESVAQVLSIVNELKTNSEYRANSDSQTNMKVMASHETRNEFEYANLNEDNPIVSKELAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KHW9</accession>
    <name>A0A7D9KHW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044092</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040594">
        <property type="protein sequence ID" value="CAB4045609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KHW9"/>
    <dbReference type="OrthoDB" id="6276451at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11109" checksum="6F8CFF8A322EB222" modified="2020-12-02" version="1" fragment="single">MYDDAARRKFLIDTGARVSALPATDADRQAGCRGPELQAANKSSIKTFGTRIVPVSFYGHNYRGNFYIADVAQAIIGADFLEEHQLLVDVHGQRIIDKQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KKR5</accession>
    <name>A0A7D9KKR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053907</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041191">
        <property type="protein sequence ID" value="CAB4045698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KKR5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10781" checksum="80314D3E9037F1B2" modified="2020-12-02" version="1">MQENCSRSFWLHKTQQKNRENDDDSSSAEGTLTVRVISENLDHGVYILTCHVLSQDMEPFLPKHVTVLLESDRRKHFDMNITSTCLRIYSPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KNV5</accession>
    <name>A0A7D9KNV5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020050487">
        <property type="protein sequence ID" value="CAB4046346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KNV5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13298" checksum="9EBB69D8704746CA" modified="2020-12-02" version="1" fragment="single">MAAILAHPGIGDGRPSDAWAELTTLNEGDTMMLRWLFLKQLPANVRTTIAPDAETLSTMEFGDRADACYRAYAGDSSPEPYDVSACFSGSPRNPPRPRTKTQHKRRKNSLGHCFIHDRHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L3N4</accession>
    <name>A0A7D9L3N4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011939">
        <property type="protein sequence ID" value="CAB4022360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L3N4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="9111" checksum="AA89505AC4239B77" modified="2020-12-02" version="1" fragment="single">LIHADESDFDRLDISCNKDSLDHEQGAIDTTQIGPIDMEISSSIDDLGSIECNVPVLQAEFVEGNSPSIRLLPSGYENEKGGTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LD89</accession>
    <name>A0A7D9LD89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015659">
        <property type="protein sequence ID" value="CAB4028704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LD89"/>
    <dbReference type="OrthoDB" id="10003658at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="262" mass="29582" checksum="BB96E6B2EF2AA350" modified="2020-12-02" version="1">MIQKRQWRKDHCDGHYAAAIFQYKSELAVKFREVATFACLDDMHRIKVGEPGFPVAAAERGRRVLVRDGASFEVGDHNFTKFSLVPSVALVNGIPSALEDSWYCEQVIVTLKEGAFEPSSPLRHAAELKQSLCQQNTAENPMLFLYTDGGPDHRITYLSAQVALICLFLSLNLDYLLATRTAPYHSWRNPVERIMSTLNLGLQSIGLMRQAGDETFEKDMHKCNNMGDMRKKASKDDSFRTASLDSVAPVKVLLSKYFKDWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LE21</accession>
    <name>A0A7D9LE21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017283">
        <property type="protein sequence ID" value="CAB4030996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LE21"/>
    <dbReference type="OrthoDB" id="5985404at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="32821" checksum="6C2BC59B61F99BBB" modified="2020-12-02" version="1">MEKIERNESTLSSKLAKDISTSYNSEQPDAVNEDETYSKITLGTEPTTSESEQRVLGVNWNFVEDQLVFDLSGIAELAKTCEPTKRNIVRLSAKFYDPLGYMPPITVQFKQMFQELCESKVGWDDEISHSIRVKWEKLEAELLQMKRILLPRCYFYNISERVISFTIHRFCDASKMTYAAVTCLKNKPFRASGSILWHSGSDWLGQTTKKLEDGDEQCVPPEECLAEMKITKPPSLSTLTLSNSSHGLNDIIRCERFGTLKRLLRVTAYVLRFVKAVQHKKDGERSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LG10</accession>
    <name>A0A7D9LG10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019121">
        <property type="protein sequence ID" value="CAB4033299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LG10"/>
    <dbReference type="OrthoDB" id="4369127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16901" checksum="6B59FBF7817B61C4" modified="2020-12-02" version="1">MNAPASFQRFMEQCLGELCDEIAIPYLDDVIVFSRIFDEHVEHLRTVLRRLREHGVKLKQRKCKLFKREVTFLGRVVSKDGYRMDPENINAVASLKNNTPHTIGDLRKMLGLLSYYRRYVPNFARKAKPLYDLVTQAATTDLCHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LIX8</accession>
    <name>A0A7D9LIX8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057092</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020289">
        <property type="protein sequence ID" value="CAB4034638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LIX8"/>
    <dbReference type="OrthoDB" id="5977361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15309" checksum="C74454EF45636B7F" modified="2020-12-02" version="1">MKLPGDNRWSLGTCVRALENRSFEVEVCGRRYRRNRRHLRATKEMAPPPNAKDSQIEPSEPIEKDLTPSLPVVEHSTPTNPLNHETENENQVGSSGSNGGRTPSESDAGQEETIPRRTTRVRRSPDWHKDYERH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LLW1</accession>
    <name>A0A7D9LLW1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Kinesin-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A080621</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Spindle</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10 11">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021568">
        <property type="protein sequence ID" value="CAB4035970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LLW1"/>
    <dbReference type="OrthoDB" id="2403182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072686">
        <property type="term" value="C:mitotic spindle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005876">
        <property type="term" value="C:spindle microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008574">
        <property type="term" value="F:plus-end-directed microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090307">
        <property type="term" value="P:mitotic spindle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051231">
        <property type="term" value="P:spindle elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047149">
        <property type="entry name" value="KIF11-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019821">
        <property type="entry name" value="Kinesin_motor_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47970:SF29">
        <property type="entry name" value="KINESIN FAMILY MEMBER 20B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47970">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KIF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00225">
        <property type="entry name" value="Kinesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00380">
        <property type="entry name" value="KINESINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00129">
        <property type="entry name" value="KISc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00411">
        <property type="entry name" value="KINESIN_MOTOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="4 11" id="KW-0493">Microtubule</keyword>
    <keyword evidence="8 11" id="KW-0505">Motor protein</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="12">
        <location>
            <begin position="35"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4035970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="280" mass="31808" checksum="54D9D1D57656169F" modified="2020-12-02" version="1" fragment="single">MKPKFFSDVITLTNAQESKEESKKQTVLAIAEHSTSSEDVSHDHDVSHEEFSIDLRSNEDIDERDQFALWISFAEIYNEQIFDLLEPLNVKEKKRRTVLKLGDDKNGHPYIKGLKHILVCNQEEAYKVLKIGQQNRRNTSTKLNNNSSRSHCIFNLKLARLTVNHQGEVNIIKVSQLSFVDLAGSERCSKTQNTGDGLKEAANTNTSLMVLGKCLEQLKYNQSHRSNPNNVPFRESKLTRLFQVFFCGQGKVSMIVNVSQCASAFDETFHALKFSAIARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNH8</accession>
    <name>A0A7D9LNH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061712</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021585">
        <property type="protein sequence ID" value="CAB4035988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNH8"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="210"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="773" mass="86937" checksum="D4EB838F85CF9463" modified="2020-12-02" version="1">MSDDESATSSGKDQPASKQPNSTTQSFNAPRSGLPPFLPFDPITDSATVSQRWKKWIRRFENLLISLREFDSTIRRGLLLTYVGEATNDIFDILPDTGTTYESAVDSLTQYFIPRGNKDVAIFEFRELTQETNETLTAYYRRLKTKATDCEFANEDEEIKIQIIHKTRDSRLRKKALRESMDLKALLAHGTSLEITDQQAQRLENANTDLNALERNRQPPASQPRGAFNRRRKPPPDGKKTCRNCGGAFPHKDGMQNCPARGKSCHNCGKLGHFAKLCKSSSKSVKHITPLKTPDDRYLQDSDDDNCFTLKSTPNKSPETQIKIGHTPVKVLIDSGASVNIIHTEIFERIKSENNHIKLAKTNAKIRAYGTDSPIDLSGEFHTTIKSTHGQSIDATFYVTTAKSQCILGCESSTALGLITLNINNIAQHEDPVIAKLLKQHEKPFKGTGNLKGVEVKLEIDKSIPPVAQSSRRIPHNMRKKVNAKLREMRDDGIIEKVEGATPWLSPLIAIPKKTGDVRLVLDMRVPNTALIRRRVQIPTVDEILRQMEGAKVFTEVDLSQGYLQLTLAEESRYITAFTTPDEGPHRFKRLIMVASPSGEYFHEIIHELIKGIPRCANISDNIWLWSDDRQSHYKQLEQLLTKLESRGLTLKLPKCSFSVPEINVFGHIVSGNGIQPDKAKIEAVNNAPPPKSASEVRSFLGLTNYCSRYIQNYSSITYPLRQLTKADAKFRWSDEHEKAFITLKQALTSAPVLAHYSLEAKTRVVVDRKPYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LYS7</accession>
    <name>A0A7D9LYS7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Spermatogenesis-associated protein 4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A038027</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">May play a role in apoptosis regulation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026758">
        <property type="protein sequence ID" value="CAB4040419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LYS7"/>
    <dbReference type="OrthoDB" id="62528at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051493">
        <property type="term" value="P:regulation of cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.418.10:FF:000061">
        <property type="entry name" value="Spermatogenesis associated 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010441">
        <property type="entry name" value="CH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052111">
        <property type="entry name" value="Spermatogenesis_Ciliary_MAP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12509">
        <property type="entry name" value="SPERMATOGENESIS-ASSOCIATED 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12509:SF8">
        <property type="entry name" value="SPERMATOGENESIS-ASSOCIATED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06294">
        <property type="entry name" value="CH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Calponin-homology (CH)" evidence="5">
        <location>
            <begin position="2"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00058372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00071322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4040419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16309" checksum="24AC8B39134442B9" modified="2020-12-02" version="1">MSGLQRDILKWIQSLDLSHPVRNSKRDFSNGYLIAEIFSWYYPQEITMHSYVNGTSLEAKLGNWSQLTRFFQKESFDIPKELVDGVIHCKPGAAQLFIQVIYTLLTNRSFKCVPANEEVDFTDFGYQNSLPLHARSTASQVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MCR3</accession>
    <name>A0A7D9MCR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039871</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037451">
        <property type="protein sequence ID" value="CAB4045053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MCR3"/>
    <dbReference type="OrthoDB" id="5986328at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15556" checksum="2DEA6F625A65FDC5" modified="2020-12-02" version="1" fragment="single">MAPLRPETIPREMEAVMKDWLESYRPVRQRTVRSETTKDKAGALPPAVYKSSDPQSSKVHFPEDQIQVIQPTPNITFVDESNVAVVVSGKDETELQIEQIDEYETDSDDGAPSSHDEDDEFGGVSELPIRPASVTRSGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FJ32</accession>
    <name>A0A6S7FJ32_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mitochondrial import receptor subunit TOM7 homolog</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Translocase of outer membrane 7 kDa subunit homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A034081</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion outer membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Tom7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000219">
        <property type="protein sequence ID" value="CAB3979685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FJ32"/>
    <dbReference type="OrthoDB" id="284357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005742">
        <property type="term" value="C:mitochondrial outer membrane translocase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903955">
        <property type="term" value="P:positive regulation of protein targeting to mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030150">
        <property type="term" value="P:protein import into mitochondrial matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012621">
        <property type="entry name" value="Tom7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46722">
        <property type="entry name" value="MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM7 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46722:SF1">
        <property type="entry name" value="MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM7 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08038">
        <property type="entry name" value="Tom7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="6" id="KW-1000">Mitochondrion outer membrane</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00014537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3979685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="55" mass="6158" checksum="839C8B98C893F50D" modified="2020-12-02" version="1">MVGWNKETKKRIQVVLSGAKTSFYYGFIPVIIYLGLKKGADQGMPEPTILSLLWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNE2</accession>
    <name>A0A6S7FNE2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034185</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000049">
        <property type="protein sequence ID" value="CAB3977459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNE2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="60" mass="6624" checksum="631A39AED7AE892D" modified="2020-12-02" version="1" fragment="single">TSQIKFICKSTVAEKGSPTMSFISFVLFGFVLVLTEHFVACNVLRETVSDEVEKRTVGVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUB8</accession>
    <name>A0A6S7FUB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NACHT domain- and WD repeat-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A006556</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000587">
        <property type="protein sequence ID" value="CAB3983188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2325716at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025139">
        <property type="entry name" value="DUF4062"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052752">
        <property type="entry name" value="NACHT-WD_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057588">
        <property type="entry name" value="NWD1/2-like_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19871">
        <property type="entry name" value="BETA TRANSDUCIN-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19871:SF14">
        <property type="entry name" value="DUF4062 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13271">
        <property type="entry name" value="DUF4062"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25469">
        <property type="entry name" value="WHD_NWD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50837">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1770"/>
            <end position="1789"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="37"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="55"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1773"/>
            <end position="1789"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3983188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1789" mass="203092" checksum="F5446883A3D50C36" modified="2020-12-02" version="1">MGSVPSKLLKLKKKKKEPEPEMNNDDETNQALSGDGVRSENHEHEVMIEPVPSDHDEEIENEEKDEDDAEQSSEEENEEQDDEEQDEEDEQEEEQEDKEETEEQEDEEQEDEMQDEEQADESEKEMEGDDEPEEEYTAWGGKKVKVEYSGTKLQALRGNVNIEYPEKTQIVRIFTSSTFTDTSVERNTLMETVYPKLKIFCQKKGFEFQVVDMRWGVRDEATDDHMTTELCMKELYACQKLSTGPNFVTFLGQKYGYRPFPPKIEESEFQQLVKAVDGSEDRATLERWFKLDSNAVPKQYILQRVTSVLPDYRNHSNPELKKAASSEWWSCFERMQMALRKAAIKVLDKNKQQKYVMSVTEDEIRRGVITATSPDKHCFWFKRVISDLDKNIGDKKAGLFVDKVWGKDAFDEEAQQYLNTLREVDLPNVLPKKNINIYNVKWSTQGIDPEHERSHDEYVKNLCQDFYSVLTKMIENGISEKLSEESNEEIFDEVFQHGIFCQKKCKAFHGRKPFLEDIKNGIENGSTTFILHGESGCGKTSVMAKLASSMKKWIGDPKATLVLRFIGTTANSFAIRDLLKSICVQLYKATGHQMEEIPDDLKSLKDYLNTCLELAAEKHPVILMLDSLDQLSGDDGGLQLEWLPKTLPSDVYMILSTLPEEQYVCLPKLKMHFPEETFKAIPKMSKEEAGSILDNWLRDAKRSLTSQQRQNVLNTFNKCPLPLFLKLAFDEACRWKSYTPENETNVPSTIREIIHSLFDRLERIHGKMLVSHALAYISGSKNGLTESELEDLLSLDDDVLNDVYQYWTPPVRRLPPLIWLRVRSDLGDYLVERGSDGARVSFWYHRQFIEVSRERYLLEQESVKVHSNMAEYFQGTWSGGKKKPFVNKQGEHLEMDRLVAQQPLMYDANEESVVFNKRKLAELPYHLVKSKQLNELKETVLCNYDFLLAKLRGMPCSLVMDDFRMAVNVFPEDEELQLLYDTIGLSVNALKLEPRQLPSQLIGRLFNMQEDASSSNTHPSITKLLQQLRSSHVPYFVPHAKCLTSSGGPLLHAIAEHDESMIDSICLSHDNSTVVTTVRGNEGLEIRIFNVRAGLLERKLTLTEPIPEVFLVWHIIMSRRDKQKLVMIGGRNILVFDLKSGEMVHQIEALSEDLAFNQTGSDIPPVALGNGDQSVAALTDKGIKIWNMETGSLEHEVPVKGVDTSGSMGALDASNEYVAYCKKDSTDVTIISINSGEIVQTIKSSVQKSSGSYVKFIKLTDEGKLVVMSSNSTELKVFDAASGKLLKNVVGFSANTTIKELLITSDGKKLICQDKYDLAIWDMESWKCRKVLNDMANIHSPNVKTNDGKIVVHANITDRIVRIYDASKDEGKEATADAASANQWVVNQINSLYPSCDNRHFITTGTANMASEISIWDVNQGKQVRVFKSLNFYPNVLRMVSPTLGVGYIYNEKMNHYALLDFAEGKMVRQLEGKACKRMYMMEFLDKDRMVSFTRGRRHLKVWNIQSGKVIQQIKLGQKHRLEAFLLSGNKKVMVIAQFGTYSGEMKDKTIPLIVYDFSTGKQHEIRENEQQLKFEAAGWSINGSISHSGRYMVNVNDYTSAILWDVTAGRKLHSLSSEQQPGAIFSSAIIEDKNIALTSFAGSKNGVFVWDIKSGECVKEIITVAQVNEIKPSVDQRLVFWKDMQGPNFFVHELESGRNLASFTSDQPIAPQVFSVINNHVVIGATGSIDPVIFCLRQGNEFGTTPVGSSVFEDGSDVTKTFVYDVNTLPPDPRDVDNDKDDDKGQAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXY5</accession>
    <name>A0A6S7FXY5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog</fullName>
            <ecNumber evidence="12">3.1.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A026768</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20629"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:47004"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 12">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11 12">Belongs to the RPAP2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.16" evidence="12"/>
    <dbReference type="EMBL" id="CACRXK020000341">
        <property type="protein sequence ID" value="CAB3980982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXY5"/>
    <dbReference type="OrthoDB" id="2590500at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043175">
        <property type="term" value="F:RNA polymerase core enzyme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008420">
        <property type="term" value="F:RNA polymerase II CTD heptapeptide repeat phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039693">
        <property type="entry name" value="Rtr1/RPAP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007308">
        <property type="entry name" value="Rtr1/RPAP2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038534">
        <property type="entry name" value="Rtr1/RPAP2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14732">
        <property type="entry name" value="RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14732:SF0">
        <property type="entry name" value="RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04181">
        <property type="entry name" value="RPAP2_Rtr1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51479">
        <property type="entry name" value="ZF_RTR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7 12" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 12" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="208"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="339"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="208"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="13">
        <location>
            <begin position="342"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="362"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00047761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00048336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU367080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3980982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="581" mass="66804" checksum="0CAD8E87030BAEBF" modified="2020-12-02" version="1">MSKSDKDSKKEKLRAAVQERVDKEEHAFRLVEKMVLLDSVDKEFFLNAGTYITVSQYKDVTEERAITKLCGYPLCNNRITQILKQKYKISVREKKVYDITERKHFCNNQCYKASKYFESQLSAEPVWMRGKTKLPGLKLLEDSEELTKKFSGSGEEVLMNARKNCDENKHAGVKHEDVEYEHEDVEYEHEDVEYENDHNDDENEHVHFEHENDNCEHEDVEGEHEDIGNEHENVDDEHEDVNNEHEHIDDNHVYNNIHKLIRFDNSDLGCVVERIGNVKIDLDFTDSDDDDDDDDIDNICDDHCADYKKKIDNNKETITENSDSCVHDDIRSTKMKIEVDSNNESSNQSKNQTRNIPKVENPQVSSDTNSGGPECTEQTGSEKEQQTRKQCVGKVHRVLVEWFSVETKKYLANSIRNTESGLFDDIKESYGAIEETKDSAKSVMLPSIDSKSQMAIRGKIVSEKLTKAMSPMLSKLSLTKADTSSQLICILKTFRFTNTNIVLKPSEWTLVALILLLVLVKCNPSLKRQLSSRQKDLHSLLSNAVDDEDDVDRLLGVFNFEECPEPPVVDGQQQFDMEELD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0J2</accession>
    <name>A0A6S7G0J2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069256</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000997">
        <property type="protein sequence ID" value="CAB3986314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5987961at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11319">
        <property type="entry name" value="G PROTEIN-COUPLED RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11319:SF35">
        <property type="entry name" value="OUTER MEMBRANE PROTEIN PMPC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1359" mass="152935" checksum="8C913A6F1CD12133" modified="2020-12-02" version="1">MCLDQGHPGIHLSKSVSFVSIRSRAYISCLHGNTWLVDGTKFKNGIRISFSGLTFLNTSLRFFDAFVAVNDTVFAETKLVSLDIEVFNLPRLDLSLKNVVFQQNTACMTIKPSIKSSKIFVNITNTLFYLFYLFYGNFSSNTPSILWLNSKENLINIQLRNCSFKKNTFKKYGLIVVVNKLGTTNFLLNQFRLEENSHTNPSIEEYDGLFRLLSAWAFMRLEYGLVYKTSSTFLTVTGNSSQINISNIQVDGFYSVTPGGGVVDVIQSDSCYLSIKDSSFRNGNNYGTGDGVLSIVVPNSMLTIQNSTIQNISNFAGATVLIQSLRSAYLQSTKHSKKFFVHLRIINSSFSYTEGGVVGVFAENLLATVGDSSFLRKAATYCGALCITTNDACTIDLHNVYFLENSADDGTIIQAIAPKESATFNLSMTNVIFVHNKIHACSQDLSGSIVLLWVRSTKSNVGFKNTRFMGNVAKFGGIVFLAFSQFTLSFVTLDTCIFRENIGYGGTVYIQGHVALTCKHSILDSNSFLPCQAGVMTLKLINSTIFFKNTTFVNNLCAALAVSFRGTTSLRIYDSAFVRDKYIGGYSAALVIDFQHFNQTNSHSGILRAFITRVLFQENIAATGSVLFVTSGEVTLTNCTFLNNFASFQGGQIVSAGRGSVDLAVVHSVFKQTIQKIIITNKQEFMITSFLRLYNSGTLFVYNTTFNWDTNSEEPLILVPKADRVSFDNASMSNCPVGHAIEKVSYSYFVNNNRHGTSLTLSCKACDYNFYSLQRGTARGLHVDDNFECMRCLRGAYCVPAIRAKSNFWGYQTSSNPPKLAFTICPFGYCKSPPANSGKYNDCQGKRTGVMCGVCSQGYTEALWSTYCTPVKDCHDHWFWVLFLALVFSMAILLVFKPPFVTYSLKQMFWFKRFAGSRTANIQANHDIIRSFSVDEETEQENIPLSSTEQLKQDKRQFSRFVEIIFYFYQIAQLLLSSSCLTEFFDTQFLVPVLGFFNFQPNFKKQGFLCPFPGLTPETKFGFKIAPVFGTLVAIFLIYALHFFISRMRGSLRPAVSPYLQASIKTIFRGYVTLATVSISLIRCVFVAGEARRFYNGNVLCYQWWQYASFTFNAIFMIPFIFVLAWISFKLHHDKITIQQFLLAIICPIPFLLLWMFRLVCPTPVVNVEENQNLNALKEMLLAPYRQAKGASERGALYWQSVLIARRFILVLIFCVVAEPSIRLFCMTLTCVSVLCCHLKVKPFQNSLANNLESLSLFFLVILGLVNLFKSVFVGSEQNIKRSLVAVVKVFQWLEMVMLGLFPAILLLLVCFAIISVFVRVLFMCFRSIFKCLFRPCAQRWFSRDSTRLLHVCDNNDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0N7</accession>
    <name>A0A6S7G0N7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">BTB POZ domain-containing 2-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A055369</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000213">
        <property type="protein sequence ID" value="CAB3979601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0N7"/>
    <dbReference type="OrthoDB" id="636773at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18281">
        <property type="entry name" value="BTB_POZ_BTBD1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.420:FF:000004">
        <property type="entry name" value="BTB/POZ domain-containing protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.820:FF:000004">
        <property type="entry name" value="BTB/POZ domain-containing protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.820">
        <property type="entry name" value="PHR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012983">
        <property type="entry name" value="PHR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038648">
        <property type="entry name" value="PHR_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08005">
        <property type="entry name" value="PHR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="438" mass="49195" checksum="BAF09DE2C5643427" modified="2020-12-02" version="1">MSLQPYNWQAGKTTVNDRVKFLFDNEILSDVHFIVGKGLQRRRIPAHKFVLSMGSAVFDAMFNGGIASPSDDVELPDIESSAFLALLKFLYTDEIQIGPETVMTTLYAAKKYVIPIMEDACVDFLKKNLRPDNAFMLLTQARLFDESQLATRCLECIDKNTCESFDAEGFTDIDYNTLLAVLKRDTLGLKECQLFEHAVRWAKQECQRKELSKTPANLRCVLSDALYQIRFPLMPVEDFAAGPAQSGILTEKEIVSLFLYFHVNPKPKVSFIDKPRCCLTGREKSVRRFSKVENRWGYSGTSDRIRFSVNKRIFVVGLGLYGAIHGPSDYNVKMQVINTETGLVCGENDTAFSCDGTPSIFRVMFSEPIELTPSIIYVASATLKGADSYYGTKGQRKVVCEVPDSKDENIVFHFSYATGNNNGTSVEDGQIPEIIFYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G173</accession>
    <name>A0A6S7G173_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Zinc finger 271-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A069737</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the krueppel C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000896">
        <property type="protein sequence ID" value="CAB3985648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G173"/>
    <dbReference type="OrthoDB" id="427030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000065">
        <property type="entry name" value="B-cell CLL/lymphoma 6, member B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000322">
        <property type="entry name" value="GDNF-inducible zinc finger protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:003288">
        <property type="entry name" value="Uncharacterized protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000045">
        <property type="entry name" value="ZFP69 zinc finger protein B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000744">
        <property type="entry name" value="zinc finger E-box-binding homeobox 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000446">
        <property type="entry name" value="Zinc finger protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000512">
        <property type="entry name" value="zinc finger protein 197 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000358">
        <property type="entry name" value="zinc finger protein 24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000540">
        <property type="entry name" value="zinc finger protein 263 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000761">
        <property type="entry name" value="Zinc finger protein 449"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:001289">
        <property type="entry name" value="Zinc finger protein 574"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000634">
        <property type="entry name" value="Zinc finger X-chromosomal protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24376:SF235">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24376">
        <property type="entry name" value="ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13912">
        <property type="entry name" value="zf-C2H2_6"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="18"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="17"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="18"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <keyword evidence="7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="466"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="678"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="766"/>
            <end position="794"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="477"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="522"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="572"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="594"/>
            <end position="607"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="615"/>
            <end position="636"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="694"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="766"/>
            <end position="785"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3985648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="881" mass="98051" checksum="454518EFDB741E9E" modified="2020-12-02" version="1">MKFPGETNQQGTQVDQTTFACVEAAQTTEQQAQVNYAVVPQTQSQPKQPKEKKVFQCQVCEKIFSHTGSLNRHARTHIEGTKFNCPDCPKTFTQQGNLMRHKRSHTGDAPFKCTVCEKTFRRMDIMKLHEKTHLDVKPHCCDVCDKSFTQLTNMLNHKKTHEKEPEFKCEACNAGFRKQTTLIKHLKVHTGIKAFVCDVCEKSFDLPSSLKVHQRIHTGERPYECNQCDRKFAQLGNLKRHKKTHSGVKPFTCEFCQKAFNRPDLLKSHENSHSENGFPCDQCSEVFTLSKDLKDHKKSAHPLANLAGIPCDECNEIFSMPKELKAHKKAAHPETKCKQCKAEFPDAAALEKHAQTHLREKPYKCAICEKSFSDPEGLIRHVTTHTKTKKEHRCDMCDKTFDQAGSLKQHMRKHTGEKPFSCEVCGRCFSQVGNMIRHKKRHSDNTPHTCGVCEKTFKRIDHLQAHQKTHPEDALETNPTISNNETSQTGQTTQGGEVRDDSQTDESSQAGETGIADEESQVGKNSEAIQTGETTQTGLTSQAGQVGNVSQTDESGIADEASQTSQVDETSDAGKTDEASQTHQVDEAIEMDETSQTSDVGEASQSDETSRAENENQTAQVNQTNHTIETSQTGQIDESGGTHHGDQIIPTSEAGRTDEPMQTDEIVQTASDVIHIEQIGDTVRPAEMDPTADTGETSEVTETNQFPETSQFVLITELGQASLLAHAGQFVPVGQISQADENDQVNQTSTIIAEALVGLTQVGQTESESNGGIQASVSPFKNTPPKTMRKKPHPCGQCDKWFEQPSALKLHERVHTGERPYQCEQCDKKFAQHGNMVRHLRTHSGARPFKCQGCEMTFARKDFLKLHESKCQAAEATVETV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G328</accession>
    <name>A0A6S7G328_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Major facilitator superfamily associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A027865</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. MFSD6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000971">
        <property type="protein sequence ID" value="CAB3986155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G328"/>
    <dbReference type="OrthoDB" id="5989317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd17335">
        <property type="entry name" value="MFS_MFSD6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051717">
        <property type="entry name" value="MFS_MFSD6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172:SF2">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="413"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="455"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="484"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="529"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="596"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="618"/>
            <end position="641"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="661"/>
            <end position="679"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily associated" evidence="8">
        <location>
            <begin position="14"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="280"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="743"/>
            <end position="774"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="743"/>
            <end position="756"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="757"/>
            <end position="774"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3986155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="774" mass="87131" checksum="B99DCE150D72AC1E" modified="2020-12-02" version="1">MRSKQPWQINKDLFIYKSFYFFYFGALGAINPYLPVYLRQIGLSAFAVGLLVGIRPIVQLASAPFWTVVADKFRKRKAILVMSIMAWLIMTIALVFVEPTEEICEFTAKNSSHDVLVNYTKHKTGFFKRSTDRPVVLPARLARSIDILRGSTLRTPSVLSSRTSKDFRKNEKLIPGESNFRESVYQGYNESKNHVPETKSGQINDELFHTSHKEKENTGTIFLLAEQKDHKHLANVLLNMTKRLPSDLKSNNMSAAQNVSRAAHNMSSTPKLLSNIIPSSDDFQTSAEGSTDGQNEVLNPFNMNGKSKSSAGQNWQSSLQLHTIRAIINQQTAESQYVKSKDKTVHSSEVKYKRKKKKPDRNRTLKATKVKGGTKNTGIKLAQSLDKTNPANETLKVIQTNLFKSNTNEMKRLFVILLVLIVVGEFLETPSAPLSDASLLEYLGENRIHYGKQRLWGSLGHGIASFLVGMLMERSRHLTCGEEFIDYTTSFSVFTIFMLVTLVISANFKFRYKDVEETDSSVLSTVLTVHYISFLTAVCYMGMCHGLIHNFLMWFLEDLGGSKTLMGLAISSRNSADLIMFFIVSKLIEIFGQIKIVFIALISYGTIFIAYSTMSNPWFALGVEFLGGFTFAASWTACTSYLAEAAPQESVTTMQGILQSVYWGLGLGTGSILGGHLIHTLGPQWTFRAAATGSFVIASLFAATQWKWQRENLDDSLGIYYYFSSGRDSEALLQEDTTDRTLKITKTKDQRNVEAKRKVRKEKHEKKYNKRENP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3E2</accession>
    <name>A0A6S7G3E2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DnaJ homolog subfamily C member 10-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000544">
        <property type="protein sequence ID" value="CAB3982816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3E2"/>
    <dbReference type="OrthoDB" id="5810603at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005788">
        <property type="term" value="C:endoplasmic reticulum lumen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051787">
        <property type="term" value="F:misfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016671">
        <property type="term" value="F:oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036498">
        <property type="term" value="P:IRE1-mediated unfolded protein response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03004">
        <property type="entry name" value="PDI_a_ERdj5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.30.10:FF:000087">
        <property type="entry name" value="DnaJ homolog subfamily C member 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052460">
        <property type="entry name" value="ER_disulfide_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035674">
        <property type="entry name" value="ERdj5_TRX_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44340">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44340:SF1">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00421">
        <property type="entry name" value="THIOREDOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="567"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="573"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="591" mass="67442" checksum="6E063401FD8E8D10" modified="2020-12-02" version="1" fragment="single">GEFFRGTRTTDSIINYILDSLDVVLVDLHFDQFDAEIDASDVPWLITFCDPTDETDCLSHESQIKISAVLNNMVTVGSVDCANEEALCKFLGRRSGVVFYPAKEVTPERETVVEEYHSQDVIQAVLGLLPNLISVDDESFKMVGLTPEPWLIHFGKGDVKALEMRKLPSLLPEFQVGHVDCVQFPALCEIHHVHKYPSVALFKQNGAYEWHHGRYTAQDIAVFARDTSSSKVFTLGPDSFPNPVTTGEENWFVDFFAPWCPPCMKLLPEWRKASKMYNDENNEVKFGTVDCTVHKTLCQQYNIRSYPSTVFYNNTMPHSFRGRHSVDSLIEFIEDTLRPSSQLLTPESFDALVGGKAKGETWLVDFHAPWCSHCQELAPVWNKLAKKLKGEASVGSIDCQKYNSFCTRHGIQSFPTIRLYPHSSEGVRRSVHYQGWHNLDSLHSWAFRYLPSIVTDLNSFDFDDKLLISESPWIVDFFAPWCGHCVHFAPYFEKLAKRLEGKVQFGKVNCDEHHHVCVEAGVRAYPSIIFYRGATNGRSQPSRGDHAFRSQDIDDMYDATMRLLQDLEDRKDKQKKKTAKSRKKTPAHDEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G449</accession>
    <name>A0A6S7G449_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcription factor SOX-9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A076044</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000629">
        <property type="protein sequence ID" value="CAB3983572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G449"/>
    <dbReference type="OrthoDB" id="1919336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22031">
        <property type="entry name" value="HMG-box_SoxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050917">
        <property type="entry name" value="SOX_TF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45803">
        <property type="entry name" value="SOX100B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45803:SF5">
        <property type="entry name" value="SOX100B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="114"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="114"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3983572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="387" mass="43730" checksum="9241047069C2B00A" modified="2020-12-02" version="1">MAERIESRSDILSSTELNDVISKTVNHVINETAELTNEAPSSSKRRKQNDNQVRRPMNAFMVYAQVARKKVAGKYPNLSYRKLSKTLGELWRMLDDEERRPFVEEAERLRREHKRAHPTYKFKPQRRRKKAEKQSEGESSAFAGNASIMNSTQCGPMLHGRNFTTHDDFNTAGDLLHSPYLPRNESANSVSTIWPFIQNNSSEHYFNSNIADTTRGFPSVSTITANSSVNFPNQRQYFDPMDHAKMSGHPGRPNSYSQFDPMDQKLSRQHDLGRANCSQNNSVVSLVTPEQPSDFSTTKFLNAGPSNNVCFSESYPHASSVDNLPYAGETYGLGNRGLSPFSRSTPVITSTNVLPQAMSSPYSRNMFTDLSARPTRNEPILNFMEHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9F9</accession>
    <name>A0A6S7G9F9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Reticulon-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A033517</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Endoplasmic reticulum membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000921">
        <property type="protein sequence ID" value="CAB3985779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9F9"/>
    <dbReference type="OrthoDB" id="567788at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.2480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003388">
        <property type="entry name" value="Reticulon"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046964">
        <property type="entry name" value="RTN1-4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45799">
        <property type="entry name" value="RETICULON-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45799:SF2">
        <property type="entry name" value="RETICULON-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02453">
        <property type="entry name" value="Reticulon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50845">
        <property type="entry name" value="RETICULON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="182"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3985779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="228" mass="25980" checksum="CC836F68761C9E2F" modified="2020-12-02" version="1">MSFMDILYWRDPKKTGPIFVACLLLLYSFQHFSVVTVVTYLLKISLLPTLLFRLVISLKAALTKTECEHPFKEGLELDIDALVGTSDKTTLPKFVKTILHECRRILLVEDVVDTVKVLAIVHVVSYLGDWFSGVTLLYLGLIATFTIPKFYDMYRDEIQKLIEKVSRMFEDVKTRVLSNIPSKSKSFSTKKPKGLKEPKNVEEISPALRESSLPSPEEASDEEKEKMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA75</accession>
    <name>A0A6S7GA75_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6589 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053560</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000485">
        <property type="protein sequence ID" value="CAB3982271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA75"/>
    <dbReference type="OrthoDB" id="5955918at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6589" evidence="1">
        <location>
            <begin position="303"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="497" mass="57878" checksum="1F2EC9D4083C1179" modified="2020-12-02" version="1">MLLDHIGQRFLERAVELVKSGYKFVFVLDNIDWEERVHDMRKDNQNTSVHAVATTIVFNRVPDEKLPDSEPQQDLRKCNVYQLVKLTASEIESIRKQYHRFVQDLLFEHFPFFSSYQSSLPNNSTCCRYSDEMAMKSETITMPVLMKDEKKYAECVDVLDKLEDWTHQKYTLLLDCANQVNQPLLLIQFVLRPYPHLQVRFLLHPYLQLPVCFLLSLYLPLPVLFLLYNSVVDLTNLPHISHLLHLVKIHCAELEFLVFGDQLTRIRLAGAKDLHAGCHTARQRLDHLYPFCIVDWHTKRSYLKDAVKSGNGEYLEVLRKQLLVHFFSTPGYEFAIEMLINILQYQVLLTEAEAHQCKWAATVNWNGGSGKNIEIDLFQENQNSEMKKLIKSMGANKSEQAISRAILSHSHKSALNDDTVILGDLRDLRPFKKVVGREFESFQDISANPTKKFDSAKFQTWIKRHTKNILLHYPVFDNDDEDDSEDDNEDVFDDIEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCK4</accession>
    <name>A0A6S7GCK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A083562</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001394">
        <property type="protein sequence ID" value="CAB3988853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCK4"/>
    <dbReference type="OrthoDB" id="5985261at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043658164" evidence="2">
        <location>
            <begin position="23"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="164"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="213"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="286"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="298"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="342"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="402"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="416"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="438"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="456"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="474"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="504"/>
            <end position="515"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3988853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="566" mass="62666" checksum="E07D95542B741A84" modified="2020-12-02" version="1">MKPLLAVSILVLGIFHINLSSAYSDKAALGARLIRSLIKPKPKADEKTDGNKQTDTLSKEMKKQMKRIDALEDIFIGSSGSPGTKKVVKEDSSRRSWVDDTQALDDDLMKDDTKRNVESLQNAVLAKRRARRDESKDDKQAGSKKASDNNDDTSLEKELENDSKGTTGFSDNTDLVSPISKKSEVPEKPDVSENSDLGGDLMGGTGAIQGDLESDKNEVKNEDSEKSAAKDDDKRSDSDDENSKKNDKNSDKDENSENDEKRSKNEDKNSENGDQSSKNEQNSSEKEEDSSEKEEDSSENKDQDSNNDENSSKKDEQNSEGDEKRSGSEAKSSEDEQQSEVEGGKSSDDDKTSDGGKRSEEGKSSNKGKSSDKAENDKKASDDSEKRSDDVKNSDDGKHTDDDDDGDDDDEDDEDDKAKSEARDWDKKSKIPVPLDDSGIHSDEKKPPFADNENVELEHDSSEENFEKPEEDSSEKKPDLVSASEGDKKSEKKSDTDFYFSNDGKGDDESKEDTANKKLGCRTVCAPLMDYETCAVPRCDYKVGTIKDLCEYLCHHQKEHCEEVCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCM3</accession>
    <name>A0A6S7GCM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044364</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001544">
        <property type="protein sequence ID" value="CAB3989748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCM3"/>
    <dbReference type="OrthoDB" id="5531344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="34141" checksum="B7F5966D26A285B9" modified="2020-12-02" version="1">MAEVLQVFELYLKKMAGECVDFRVNYDKLPSFVENSLGQAKFWQLLCQFVETLQAMLNERTKSKTTQEQDIPEDIKSIKPEIQYAERMDASLVQITASKAEIDRRIAAFLRKKQLDVDIHNQREFCNLLNTENEYSCARVDAVFLPRVGQKSHITVTDADRENEIMESDNTVTVDTMLYSLPSKRQKTSDSAEELPYGVQERLDNMESHLKLSVKSVEHGVYSRIKKLEEKILYLEGLSPEYFNYKSASRRLQTNRQTRNTDQLASSYTNDIDARMLKLKEKLLSEKQTRKKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFQ6</accession>
    <name>A0A6S7GFQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004878</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001596">
        <property type="protein sequence ID" value="CAB3990073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFQ6"/>
    <dbReference type="OrthoDB" id="5958863at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="202"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="209"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="25250" checksum="4474B0E2E3C2F412" modified="2020-12-02" version="1">MPQYKPESKQEMKITKGLPRAYDCSHSKHGCCWDGRTPAFGPAGKGCPQCRDVYKDFCKRTKKLCDCPMVADYCRITCKLCSTGKKRRGTCQSSTYNCCWDGKTSAKGAKGEGCPKIKDDPIAKCSKFESECLRNPYYMWTKCRDTCLKNLPPIEPFLQGLGPVSDLGIPPSACGQPFPGIPPGQSAPGTLYPYPGMPHGLNGSTMGKKTSRKNIKLLEKKHRGSNYKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJH7</accession>
    <name>A0A6S7GJH7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A051421</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020001873">
        <property type="protein sequence ID" value="CAB3991553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJH7"/>
    <dbReference type="OrthoDB" id="5982348at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="4">
        <location>
            <begin position="225"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="3">
        <location>
            <begin position="953"/>
            <end position="1063"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="107"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="107"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3991553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1154" mass="131850" checksum="A5D455C4C56B37FC" modified="2020-12-02" version="1">MLPYYSLEDSLNSLFSNSQYQYCLLTINSNCVSIIKTSEGLYKVFDPHSRDTYGIPDPNGKCVLVSIDSIGNLVTYFQNTIPVRSVTPFEIKGVTVELMAFESAEQTDTSGQKANTNRASYKRRQTTESASHKQAWLENARIYKKRKQPEKEVRNLQNQGDYLERFDITNGGIYEQAWAKFNMQKFSKSIHYIVAKCTICKEAWPVKASSKISETYVCQRCSRDKKSPRKFSFENSMIPSPQPVQLQGLTQVEEMLIAQALPIMRVYIKPGGQRGYSGHCVNLPQNITELATSLPRYPRALSVILVKVKGKNNTFKDVKVRREKVHNALLWLIQNNPLYAELEIDTDALNSLPENGVPTDLMAVETEDDIINDSDMMPDEGPLTDNPDEDIVYNNSTELVVFYQLVNRKYKKRKLLETSCQSGIFLKQNPGEAHLTIDELREMAAGAKWHWFRYEYQGRGSIHCHGTAKLNNDPGLCQLTQTQTALKGFLSQKVKDENSILIDTTELDQDIEAGQKAADTVCQYVDWLLSTVNPNPPDENIWIRPNIHPCQKCHGDITDEEQNSDYIDLLNMVQRHTRCSTSYCLRKKSNESELKCRFHFPFVHCPQTKLEFEKVNSKDDNIHYKARVVTRRNDSRVNNHQQVQLQGWRANCDIQVVIDHYACVEYLAKYAAKGEPRLSVLKDAFNNIMQKVGNNSDPHRAIKKVVMKTMGERDYAAQETMHHLLSLKLHSSSFEVIPVSLNGSRKEGSNFALYCKYQLLRYKPWTKTQSDVWGGQENPTDELLIDAWKEYLQTPSAQEPVPDWLEKLQCIVQSQHDTGDQSCDDQGNTREEWMILSDLNTPFENLEQLPVLANEWHHDTNHYSEQQVNEMPTWIKTMRQDHVVNADYDVVDINSFSEMQKLGYDIVKMFHYRKTHCVSLLLVLLALLPIGSRGRNDLTGQSLCRLQESSHGIEYNIIDEYSILGQVTFGWIDKRCKQATGFHNKILGGKSLILFGDPGQLPPVADKPLYHAKPSSAVGEQGFQTYRMFDRVVKLTVNQRVQGMSAEQIQFRELLLRLRKGESTVDDWKLLLTRQPSAVTNLCDFQDSTRLLYSNEQVANYNHQQLTKLKHPVAQIRACHSSATAAKIPSEDMSGLEPIVFLAKGAKVMLTMNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLN1</accession>
    <name>A0A6S7GLN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Delta B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060173</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001704">
        <property type="protein sequence ID" value="CAB3990672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLN1"/>
    <dbReference type="OrthoDB" id="10266706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="115"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17684" checksum="ED00D7DEA4E315D7" modified="2020-12-02" version="1">MNKLIFLDVTSLKTNIIAQFREPTYEVCGLNCADYRFCVAFNYKEKSEGHEWNCQLTNTTQHNFDNNASRKKRVWTFIKDNVDRSQVALCRGEVNECHNGGTMIWDPEKPFKCLCKKGYEGEICEKGDNNINEYEGVHSTRDLKAYIYSHAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUY2</accession>
    <name>A0A6S7GUY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055936</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002736">
        <property type="protein sequence ID" value="CAB3995818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUY2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17780" checksum="72ED613872CA1D9B" modified="2020-12-02" version="1">MADPWTKCCQLGGQIELSSQNRQIASNSRKRSVFNCRGVHLPKLRRQELQFERFIYVSRDNKIMEEREKTEQNNRDQSHDQERTQPASSDTNLSDVVGQMPSRVANVACAAIQRRPTQTDQTFMTPQEIGLILRQIGDEMDKLASGGTGNRTEKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H281</accession>
    <name>A0A6S7H281_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043207</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003405">
        <property type="protein sequence ID" value="CAB3998653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H281"/>
    <dbReference type="OrthoDB" id="5970727at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05162">
        <property type="entry name" value="PWWP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06080">
        <property type="entry name" value="PWWP_MUM1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035504">
        <property type="entry name" value="MUM1-like_PWWP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048795">
        <property type="entry name" value="PWP3A_3B_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000313">
        <property type="entry name" value="PWWP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20886">
        <property type="entry name" value="PWP3A-B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00855">
        <property type="entry name" value="PWWP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63748">
        <property type="entry name" value="Tudor/PWWP/MBT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50812">
        <property type="entry name" value="PWWP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="212"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="304"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="348"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="494"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="637"/>
            <end position="696"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="226"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="310"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="359"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="391"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="494"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="507"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="651"/>
            <end position="666"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="667"/>
            <end position="682"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="856" mass="97169" checksum="0F28131D0F93D2C9" modified="2020-12-02" version="1">MFSVDDIVWAKSSVAREIFWPARVIESDSDLEDIKYKKNKPTVACVTFLAEGTFEAIKNSSNVQRFNCDRKEVFLKKGRNLKKQGKRLQFESAVKEAERYVKLHGKRKRTPTKYFYCTPDTKKEASSPQTRRRVSVATTSIVNKTETKPSPQAKTKCSLPTILEESGEMLVSNVSTSTEQNKIDNCKEKIVTKRGRKRKNIELDCENKDNNMSLVSSRHRTRGRPRSNSLNEPSTSRTSHKIDPKLENGCNSSLQSNSVNKATITKATCENCLGIESTDNAACEKTNRKRFSFKSNIKECLRKKFKSSSKGKPESSTVCKTDSKIKQNDNLETISEECESKRDGMMLKWAGNENGNSETDGKDSTAFRKETKRPRIALCEDGRENEAPLPNNKSGLKKQNSSRQNTTMDGSESSFSKNNEIRKAADSSTKAKQSLDACLESLNAPSYRNANGLGHSELDGIQPRVSCDDSGLACDKTADMLRCNENENKFESFVEKGENADVKDKESDEEDNAKDDCSSDDESLPEAFSFSPGTKTNFRPGDVVWVKHQKDPFWPAQINREASSNKKTHVYVKFLPKSDRRGIKVPKKNVKLFTEDHETFLRYKNQEVDPSSLKEFNEAVEQGEKILVRRVFPDQVSDVSDDDGLPSPSNDKQDKPVVEADKPADEKPEDGESGFDSSETENLEVAGNGRTPRKRKQVTRYSNILKELHWCKQRLLDIYREKFASTRHKTFKYGTVTEKNSLKHRAGFGPIQDEETCEAIIKLLKSWYDVETKDFSVTIDYICDVWLPEAMIYYIQINDSLSAEAAEKMYLDQARHVDKQDVEETRSWLKNKKIDKATMEETIERAKQKLLYALST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4S6</accession>
    <name>A0A6S7H4S6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071352</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003169">
        <property type="protein sequence ID" value="CAB3997716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4S6"/>
    <dbReference type="OrthoDB" id="2423195at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031248">
        <property type="entry name" value="RNF213"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605:SF16">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605">
        <property type="entry name" value="RZ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1120" mass="127123" checksum="EDE04DC2B9CF36CE" modified="2020-12-02" version="1" fragment="single">MADVLSSNSSEEDDAVTNPIQLAINKGANITEPDRAAISRKRKIVKNSGKYKASRMKNHSKNDTCVWDRLKDFPGQHFVNENGQLRCNACSEIISIKKSSIEKHVQSKKHVNGIASIAKSKKENQTILECLKKQDIRDRASGSTLPEDMRLFRFEIVETFLLAGIEISKLDIMRPFLEKYAGHRLTGASHMKDIIPSVLEKAREKIKAEIQNVQEVSMIFDGTARLGEALAIVIRYVQENFKPTQRLICLEVLAKPLKGSELAQRLMSCLVVNHNFGPNLVLATMRDGAAVNGAAIRQLSFFYPNIFYVTCFSHTIDNVGTHFKFRVLDIFFRHWISLFANSYNAKLLWKERTGQSMRTYSNTRWWSKWEVQKQVYEYFGDVVPFLRENENLSPATRQHLLEIIDNPRDLQDLRLELAVIVDAGVQFVKATYYLEGDGPLIFSCYERLSAVSNAIGANFPSTSAIAREIANGDVVVQNQLITQATACVQPGLLFFQEKFSVQFHTIVRAFKVARLCCPVQVQQLKPDAATLEEFSNFPFIANSSTVEYVFEGILRVSDLYLQLCEVGEISNLTWKTKFRCSKIEGCREELLDNIDKTCETMENKLKQWKKNINGERHKCYSLNHFTMKQILNLRKELAKACIGLVAMDELPLQTFMLLEAVNKAIDPLLLANVLRKMIPENSIFLTEEGFKDEQKYFANDTGGEEILLENVEEEIDVIQPIMRKRKNSLETFTAAKETLEGMSMNYSEEYLLAALEHCGRRATEDELVAWVASDDYDEETVTMLCEKAKKNPRLSDLVKDVFGPEFQAINDEETFLCNMTANETEIERPQIVLKPYVNNEEDTYLTLEILAALLDRLSESESDYVRRQLPSVLKEGEPNLLLVPKGEVFGCVLSLFMGANDQPLPTDEEVIVCDENTTAEEIELLWRRAVVDESGLLFCLANADLLDYDVSQQAVRSLILLTQNHSRYHLVVICSIENEDKSHMVASIDQFRRQFPLLAPMRGIQHYLKEQLVVSDAKMVGDVQWAPAATVDMEKLSVRVVQSSRAGMGKSLVVKHLAEQLTNLPNNKKLREDLMLSLCPTIPVHGISVDSDCVTRTLRSHAVKRDIPVSRIFHLDMSQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBD1</accession>
    <name>A0A6S7HBD1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Aquaporin-8-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A060830</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the MIP/aquaporin (TC 1.A.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003830">
        <property type="protein sequence ID" value="CAB4000407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBD1"/>
    <dbReference type="OrthoDB" id="3222at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015250">
        <property type="term" value="F:water channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00333">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1080.10:FF:000019">
        <property type="entry name" value="AQuaPorin or aquaglyceroporin related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="entry name" value="Glycerol uptake facilitator protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034294">
        <property type="entry name" value="Aquaporin_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000425">
        <property type="entry name" value="MIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022357">
        <property type="entry name" value="MIP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19139:SF284">
        <property type="entry name" value="AQUAPORIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19139">
        <property type="entry name" value="AQUAPORIN TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00230">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00783">
        <property type="entry name" value="MINTRINSICP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81338">
        <property type="entry name" value="Aquaporin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00221">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="71"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="105"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="149"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="181"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="224"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4000407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="28289" checksum="1C8AD1C9D914D6F7" modified="2020-12-02" version="1">MEGNSSKSTEKGTNGTAEKRSSVSSSRKQSSVFMKYVRPCFAEFLVVLIFVFVGVCSVANASSFIPLVHGLAIIVLAFLAGGISGGHINPAVTLGVLLAGAISPLLALGYVLSQLLGAIVGAGFARVVLAKVVYENINGGAHSLGTDVTIGSAILAEILATSLLVLTVLMTAVDSKNKVPIAPLPIGFSVAVGIYGIGSVTGGSLNPARSFGPAVMGSYWSDHYVYWVGPILGAILASAIYRIVLASPDRLLFCKGSNVQPSHTDVELGSTARLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNU6</accession>
    <name>A0A6S7HNU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">cGMP-dependent kinase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046678</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005401">
        <property type="protein sequence ID" value="CAB4006069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNU6"/>
    <dbReference type="OrthoDB" id="63267at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000961">
        <property type="entry name" value="AGC-kinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24353:SF111">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24353">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00133">
        <property type="entry name" value="S_TK_X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51285">
        <property type="entry name" value="AGC_KINASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14274" checksum="40E5624150D2FC9D" modified="2020-12-02" version="1">MYELLTGSPPFCGSDPMKTYNIILRGMDMIEFPRKITRNAHVLIKKLCRDNPAERLGYQKGGLKDIMKHRWFDGFNWEGLRQRKLTPPIIPKVKSGTDASNFDEYPPDDEVPVDDLTGWDRDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HRR1</accession>
    <name>A0A6S7HRR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006058">
        <property type="protein sequence ID" value="CAB4008214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HRR1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="412" mass="47799" checksum="43B11DF1F21BC70E" modified="2020-12-02" version="1">MDDFGEYDDYEWDDWEETNLDNDDLHETGLEDLDRQDDELWMTDFKRNNEDDTSTKRKRETNLLYTTGSSVQLKSEHMKKLFTENYNLNPNDGPNSRNLFSRLDVVDKYWLTFDNVKVAFIDRNGNYFLSKNTSNVQGLKDFRTAFEMATEEHRKTLNSITEEETGGGDNTDAISNDVRDEIHRENIDDNIEFHDRVLQLHRDGKFTEQETRKLVGITRPKGKPEERIKYLKIEREKIKQDYKDESDPERKDIFREALEIIEQNIDDAKLEMYERPESEEGIHRVREKFGEDTRTKFEKFTVWARENLGVLSAIAISIAGIITTVVVAGKKTLVDAAKGVGAVGKALAKVAKAALPVLVPILNMLATILKWGAQGLEFLAKNLWLVAILIATFIYDYYKKKKENFLFHLSMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWL5</accession>
    <name>A0A6S7HWL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035928</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006116">
        <property type="protein sequence ID" value="CAB4008413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWL5"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="431" mass="48682" checksum="71AF2DD03702E278" modified="2020-12-02" version="1">MSKLFKSPTTRSYKNYNPSLFSSDLVTKSDRLLSILSNTNVNTILETFKDVLHSTLDVHAPLKTFKIRNRSCPYVNNEIKELMKSRDLHLRRFQLTRDEGDWVVYKEYCNNVKTKIKAAAKDHTFNEVREHKHNSRSLWKIINNIIPSKEKETQVYSKDPKTVAKEFNLFFTSVGRNAAATAESLAKDNNVALSNPLSNVITYPSDQLFNFQSVTCTEVQRIIMAMPSNKSPGPDKIGMRVIKDCLPIILGPLTHMINCSLMTSTFPDLWKISEVIPLLKEGDHEIASNNRPLSLLEVVSKVCEKVVLNQFSSYLKEFNRISSHQSGNRSLHSTETLNIFVTDTMLEAIDNKNLTALILLDLSKAFDSVSHSILLHKLSCIGASPEAVKWFQDYLTGRSQYVRIGSTKSSARPITHGVPQGAILSPLLFYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HY18</accession>
    <name>A0A6S7HY18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclin-dependent kinase 5 activator 1 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072778</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cyclin-dependent kinase 5 activator family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006764">
        <property type="protein sequence ID" value="CAB4010376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HY18"/>
    <dbReference type="OrthoDB" id="7676799at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030426">
        <property type="term" value="C:growth cone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016533">
        <property type="term" value="C:protein kinase 5 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061575">
        <property type="term" value="F:cyclin-dependent protein serine/threonine kinase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019901">
        <property type="term" value="F:protein kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007411">
        <property type="term" value="P:axon guidance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004944">
        <property type="entry name" value="CDK5_activator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23401">
        <property type="entry name" value="CYCLIN DEPENDANT KINASE-5 ACTIVATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23401:SF0">
        <property type="entry name" value="CYCLIN-DEPENDENT KINASE 5 ACTIVATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03261">
        <property type="entry name" value="CDK5_activator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="32218" checksum="F62B896F5432E72F" modified="2020-12-02" version="1">MGSNHSLNRKEILQEYGVVNHANNKEKNNNTSSVPTLIDSMGKENVILSNHDVQLATAYLHKYAHVSKRRMKTIFMPTATKNTNSTNENKTLKPAQANSAIIPATTLNNTHKTKTQNISNAKAALTSSHFTMKCLGTFVCARYLRMLPHLSINDVITWLKSVDRALTLSGWQDHAFLTTPNITFIYMLARDSLPENVQSMNQLKSELLTILYMAYTYSGPEISYPLKPFLCDKNRAEFWTRCVWITNNLSGDMLKIHKDSQFYEEVQIELATYGCLFQRSKRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4H4</accession>
    <name>A0A6S7I4H4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088934</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007857">
        <property type="protein sequence ID" value="CAB4013364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4H4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="13275" checksum="622FF6C2D615518E" modified="2020-12-02" version="1" fragment="single">KYILNYGARLLRITFRVDSQQLQIMKKRQYLLRRKQEIPTLVDDRREQNISVETLADDRVIADVIETQIKMAERDAEWKKAAEVLNIYSLIIHILVVLFTFCLVFIDARHDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRX4</accession>
    <name>A0A6S7IRX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015119</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011780">
        <property type="protein sequence ID" value="CAB4022064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRX4"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16122" checksum="8E4F98F4A12D750A" modified="2020-12-02" version="1">MGELSTLKYLKYGVPQGSILGPLLFLIYINDLPNCLHHSTARMFADDTNITVSGKSIKEAEVAVNADLNNIREWLLSNRLSLNLVKTEYLLIGSRHNVNMLEEQPRVFIGDEPIKGVQVTKTLGVKIDQFLTWDSHIDQISKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J340</accession>
    <name>A0A6S7J340_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A072253</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014111">
        <property type="protein sequence ID" value="CAB4026276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J340"/>
    <dbReference type="OrthoDB" id="2401965at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.640.10:FF:000003">
        <property type="entry name" value="Molecular chaperone DnaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.640.10">
        <property type="entry name" value="Actin, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.34.10">
        <property type="entry name" value="Substrate Binding Domain Of DNAk, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029047">
        <property type="entry name" value="HSP70_peptide-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="HEAT SHOCK PROTEIN 70KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00301">
        <property type="entry name" value="HEATSHOCK70"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100920">
        <property type="entry name" value="Heat shock protein 70kD (HSP70), peptide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01036">
        <property type="entry name" value="HSP70_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4026276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="464" mass="51604" checksum="2122D3B55F67C11C" modified="2020-12-02" version="1" fragment="single">MAIIKEDGTRQDIGIYVDDSDVDPCIPSIVAFAQNGELLVGEEALRQAVVNPHSTIYEVKRLMGRSYYDDPDHKFVYRVRPTLKSHSLKGVRAAVEIPCGKFRKKLVQPELISALILRHVADHAQRYLGVAVKDVVISVPAQFDDAQRKATMDAGLIAGLNPVKIVNEPTVAAFAANSLTEKLLAANDEIDNSEEEKQRHTIWAVVADIGGGTTDYALMQIQGSYYKVITTDGDKTLGGRDIDIRLTEVMTRILEEKYLGFDLTSSEFQQKLRIECENAKIVLSEKQQYSLTVEYVDQDERTENLPLEHLLTRVEFEEYISGIVEAMIKPLHSLLTRAGGSITETVGQGIKAENIEDLYLVGGTSHIPKLKELLLSYFSNVKNVRHKDPVQLVSRGAAAFGAALTGLVQVGKMPRIDAVPLPISIAVDMDDMHVIFERNRLYPCIEKRTLTTYTNNQNAIVIKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9T9</accession>
    <name>A0A6S7J9T9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107355137 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002759</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014759">
        <property type="protein sequence ID" value="CAB4027368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9T9"/>
    <dbReference type="OrthoDB" id="5956617at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="342" mass="39643" checksum="FB68E8CEC0571336" modified="2020-12-02" version="1">MLSDEQLDEQISDILKVFPNCGYRRMRGFLTARGLHIQWRRIEDSMKRVCPEGILMRCLQFNVLKRRIYNVRSPLSLWHIDGNHKLIRWGFVIHGCIDGYSRQITFLHCSCNNKAQTVLQLFLDAVDVFGLPSRVRGDKGVENVDVAWHMFTHPMRGPDRGSFISGRSCHNQRIERLWRDVFSGCTHIFHSLFHHMENEGILDIGNDLHLYALRYVFTKRINNSLKTFAEGWNHHPLSTEGNMSPAQLWVWGLRNQLIDMELNDVEINDYGIDDDGPSPNPAWSEDASFPDVIEVPDIYLPIPPDEVDSHLAQFDPLASSQYFGIDIYLQVLTHLINIFDDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBA4</accession>
    <name>A0A6S7JBA4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026713</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014839">
        <property type="protein sequence ID" value="CAB4027501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBA4"/>
    <dbReference type="OrthoDB" id="5952622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="29714" checksum="5B9D10535EB83077" modified="2020-12-02" version="1" fragment="single">MDVREHMADVFTANQCLYVHCLDLEVERILHLKSVPCIELYMVMAHVSFPEKLSERLAVLFLHSEENVSKLREQHSPAIIEIKSSCVHTIENEGPDEGSTIMLVFTFDVMVNNSIAAQVLPPRMPSSEEDDIVSMPFLKLDSCKCNCTSFPELSDVLLEEGKRNACDVSNEAEAMEAANMAEDTSATAILSANNISASEANSTDCYPESEVSYSETFTLKGSSFHKDFQRVLRSCKQMLLENIPVELKLCNEPVNVNDENAIVAKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEL4</accession>
    <name>A0A6S7JEL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008683">
        <property type="protein sequence ID" value="CAB4015361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEL4"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="16522" checksum="5A5FE2C51EE8C3C7" modified="2020-12-02" version="1" fragment="single">EIPWDILSSIPSNDQKLYFLTSIINYGLNLIMPERSIKVHPNDRPWVNSNLKSLINRRQKAFASGNVTLFKMLRNKVNRERKRCRKSYYQSKVHNLRNTNPRDWWREVKQLCGTSKLNNKSVKDRLHQDLWQETDINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JF10</accession>
    <name>A0A6S7JF10_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Reverse transcriptase RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A065816</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017163">
        <property type="protein sequence ID" value="CAB4030826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JF10"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="98"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4030826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="27104" checksum="6855E289CB7B1EF6" modified="2020-12-02" version="1">MNVFGHKFLSRGIHPDKKKIESVVNAPAPKTTAEVCSFLGVVNYCSRYVKDYSTTTYPLQQPLKEKTKFHWGEEQQSSFVKLKDAITRAPILVHYSISAPTRIVVHASPWAVGAVLLQQQSDCTYRPIAFGSRSLTETEMKYSQIEKEALAVVFGCEHFHIYLYGKSFEMDTDHRPLEYIFKPKSTGKPAPARVERWLLRLQEYDFTVIYRPGPQNLADALSRLPNKIPISNMESCAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHL0</accession>
    <name>A0A6S7JHL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tyrosine- kinase ITK TSK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006134</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016291">
        <property type="protein sequence ID" value="CAB4029614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHL0"/>
    <dbReference type="OrthoDB" id="339325at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005126">
        <property type="term" value="F:cytokine receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004715">
        <property type="term" value="F:non-membrane spanning protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007259">
        <property type="term" value="P:cell surface receptor signaling pathway via JAK-STAT"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019221">
        <property type="term" value="P:cytokine-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051286">
        <property type="entry name" value="JAK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45807">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE HOPSCOTCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45807:SF7">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE HOPSCOTCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="25947" checksum="4776F2C02DBAFEA7" modified="2020-12-02" version="1" fragment="single">MQNEEDGSGFPTVITRSQIVKMDEDSPKTDSIDIYGDFFPEKQETVDGKKTQKTKYQTKDPVDDKSDIHEASTVISVPIPEILPDDLDINENCKYAIGPKTLSIMGKLNGRMVTVKKYQRTIPDCEISQLLNDEYETIRCLYHPNIALLIAICNGPTTMEQYLVFEPLEYHFLHRLLFEEKAKLEEDSILKIAHDVANAMQYVYNMGFLHCYLGAHSVIVTRDYTAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJX3</accession>
    <name>A0A6S7JJX3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Deleted in malignant brain tumors 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080906</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017468">
        <property type="protein sequence ID" value="CAB4031248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJX3"/>
    <dbReference type="OrthoDB" id="536948at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.250.10:FF:000011">
        <property type="entry name" value="Scavenger receptor class A member 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071:SF18">
        <property type="entry name" value="DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071">
        <property type="entry name" value="SRCR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00530">
        <property type="entry name" value="SRCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00202">
        <property type="entry name" value="SR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4031248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14562" checksum="A7AFF7CE847F794B" modified="2020-12-02" version="1" fragment="single">MVRCVFQQASYYVLCQMSTGATFSAKSDLNIRLANTKSNKTGRLEIFHPSFGWGTVCDDEWDDTDSRVVCRQLGFSGVNATGKKAYGGQGTGSILFDDVKCTGDESFIWDCSHRGWNVHNCDHSKDVGVDCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JKZ2</accession>
    <name>A0A6S7JKZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Terminal uridylyltransferase 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008819</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019012">
        <property type="protein sequence ID" value="CAB4033176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JKZ2"/>
    <dbReference type="OrthoDB" id="5989357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45889">
        <property type="entry name" value="IG-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45889:SF8">
        <property type="entry name" value="IG-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="475" mass="52373" checksum="003E64E616208275" modified="2020-12-02" version="1">MDMFQFFEKGMRGGRIGEKEDCWDNSDYPKDSPYYSAHNKKVIGKFKDEAAGVPVIEFVGLRSKMYSYVKESGGGGMTAKGKVHLPPGGNRLTFAPGTTAKIKWSFDAKISKVIFRAWYFTSSDSAAEEVIAYIDRDFDIEIVNSSLPGVGIEKPATLVLENVDSSYNGTYGFQIATPGEQGSIFEVAVFIAITPTVKVNCSSSITVNEGNDVICVCEGKGGNPPADVMWFSDVIWFGTRIDLTANVEQTLTLSNVDAPEELCFKEEAVVGESFTIKCEAADGHPEPISYTIIHNNTEVVSTEKTYTIPVVNKSHAGLYKCIAENKLGKISKDYNLSVIDQLITRTTGTTNANFPTTNNSGKAGNKTDDGKTVVAWHILVSLVSGFIMGILISYIGVCCRRRFSHRKHQSKPEPQTPKDTSIYQELDLAKMNSEDNYQSLMVNSANNQPEREAVYMDLNQGTRDDDNQYQKLNLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVZ9</accession>
    <name>A0A6S7JVZ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036106</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020882">
        <property type="protein sequence ID" value="CAB4035268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVZ9"/>
    <dbReference type="OrthoDB" id="8962263at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="15837" checksum="8D41216CB46CCA37" modified="2020-12-02" version="1">MKNLHLLFGNTNVKSGKSSKKVAELIFLIKDHENPEVVCSSSRRPNMKGVPLLCIDKTYAYLMCSGNLVCKVELQKVMEAALALIGLFYLLDVDYPKAHELGLTMLQNLVFQDLSTPDDLFNTFQSPKKAYLDFQQNSSGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXM2</accession>
    <name>A0A6S7JXM2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045826</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008332">
        <property type="protein sequence ID" value="CAB4014508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXM2"/>
    <dbReference type="OrthoDB" id="5986507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13516" checksum="A7469ACDE34DF75F" modified="2020-12-02" version="1" fragment="single">ETSLEDRIKRHPRLTFAKAPARDQNWPHHCWLEQIESLLTDLVSTWEGMLVVTGDMNIHCISPNTPLTRSYNEILQTLSLHQLVSKPTRVTQTSLTLIDHIASNCPHRATLTNVLPCPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZX2</accession>
    <name>A0A6S7JZX2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087799</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024373">
        <property type="protein sequence ID" value="CAB4038585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZX2"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="328" mass="37053" checksum="E9E8B3D0C34853EA" modified="2020-12-02" version="1" fragment="single">NAKDHLLDLINCSQNGFIPGKSCTTQLLAVHDYIGSLLDAGKQTDVIYMDMSKAFDKVNHETLLNKLNNCFNIFGNLLCWFKTYLLDRRQRVTVLGATSSEKPVLSGVPQGSILGPILFLLYVNDLPDAVKNSKVSSFADDTKVFKCIDSISDASLLQSDLNSLGNWSTNSGLVFNQDKCKLQQITRKKNPIDFSYEINNKLLEISSEEKDLGIWVTAALSWSKHTFDRCAKANKLLGFLRRSAVEVKNPNTRRTLYLAIVRPALGYATQVWSPQSIELVRKSERVQRRASKFILKLPFTCHKWYYNCSEGNLAKTIYSLKAYSIIFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4V2</accession>
    <name>A0A6S7K4V2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016757</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026842">
        <property type="protein sequence ID" value="CAB4040476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4V2"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24017" checksum="04C6DA2B636B6397" modified="2020-12-02" version="1" fragment="single">MVQRCPQTANCLQQTNEVSNEVINPCINLSNRYSALSADKNEVSDRNARDAVRNEVEHTYANTHRSTQTPNRKQNQSHNTEMDRKNSTQHRDNQTKQRTDHRNCPNVVIVGDSMIKHIEPAKLRQGLKSGVTFRTFAGAKTEDMKYYLQPTLKAKPSHLILHVGTNDLSGKSPEEIAQNISELGKAATEQVPGLKLSISEIITRSDREDNDQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K601</accession>
    <name>A0A6S7K601_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon TX1 uncharacterized 149 kDa</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027514">
        <property type="protein sequence ID" value="CAB4040946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K601"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="155"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="168"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="221"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="252"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="549" mass="61149" checksum="F6CCD5B57567C35B" modified="2020-12-02" version="1" fragment="single">MLVNVQPGQDGQMGKHYARLSYGIPNEAIADALKPYDKFIQIKMDSFHGVYVGVRQVQTCFWCHQTGHMTKDCPNHARTTGNIINADGPLTTVNRASTSTVPDERIGAHGTGNPPSSCKDSDNSDDEDEFVDVLEELPLPEGEGGQQPVSIVLGNRTREPDDSDVFDIPEKRVDRNPDEVDPISMDHDANGVAIPFERTTSVQRNVHTPSIDLGTPSIEAYEEGDEEDGGNDNMETSMAKDNEYPNIPENGSEFSTAQENDTRTTPSTQIPPNLSRKENLDSESPSPIDLITFAVPETHSISEEEFSSWLDHATSSGCNKFGYKCISSPGTILSCGVAILYNPSYDVVSCSRDQDGRILCAEFSKDVYKSSFLSLTAWWDAGKARLKQYIREFSKKKAVSRRKLITSLEHTLFHLNRRLLNGDEMLPIIEDVKRELEAAHRDEARGARIRANVQWAEEGEASTKYFFGLERKRGQSRIFTSVKNMAGTVVSAFVGIARAWMGFYGLLFTSQSLDRIEQGSFLNSLSLKLSRAEQSLCEGDEEHWMPWLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KA98</accession>
    <name>A0A6S7KA98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Actin-related 2 3 complex subunit 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A065338</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ARPC3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029803">
        <property type="protein sequence ID" value="CAB4042275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KA98"/>
    <dbReference type="OrthoDB" id="200404at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005885">
        <property type="term" value="C:Arp2/3 protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034314">
        <property type="term" value="P:Arp2/3 complex-mediated actin nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030833">
        <property type="term" value="P:regulation of actin filament polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1760.10">
        <property type="entry name" value="Actin-related protein 2/3 complex subunit 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007204">
        <property type="entry name" value="ARPC3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036753">
        <property type="entry name" value="ARPC3_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12391">
        <property type="entry name" value="ARP2/3 COMPLEX 21 KD SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04062">
        <property type="entry name" value="P21-Arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69060">
        <property type="entry name" value="Arp2/3 complex 21 kDa subunit ARPC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4042275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21558" checksum="B5BBF5DE763A9C83" modified="2020-12-02" version="1">MEANQPSWFMLNLNDIIVNFHCWMLKASLSLLLISMCDGSTDIIEEAIYYFKANIFFKNYEIKGDADRVLIYLTLYITECLKKLQRCQSKEQGRKELQTLAVTAFDIPGDSKFPLNAMYQKPNSRQESDQMRQYMFLIPKQINHQSGGCVLQKENSWTKVSLALVNKTVLLKYGWVKHNEMKLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAJ0</accession>
    <name>A0A6S7KAJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077799</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027136">
        <property type="protein sequence ID" value="CAB4040698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAJ0"/>
    <dbReference type="OrthoDB" id="6141491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="377" mass="43125" checksum="D137B1741D52EE43" modified="2020-12-02" version="1">MISGNKLKSYVGKENGVVRWKYFGCEIEKFIQISEGNLEKLLNDPECVHENVVYFICECLKNTCAQAQARNLDTTLIHDSSFIDQFNAKIKPFLATAATLNWTPWYNHETDSIHLYQFSISPGYAEKEIRISKTSKWTFYTYGVEREKSNIHVFKNVSETLNSVKSLVDLLNSLKTLKLCDGCGTTETCKELNVDNENGISYRRRNGQEGISVENGAMRSTDCAILVASTSPSCQSCQKAKHYLRTLRSRKTVAESKTDVTVRALNELLKFMKTDGFVTEYGSNLYLNLKKISQDHVESYFSAQRQMCGGTQNMTGYTYGYNINSLTTLRSSRLLMKKQTNVYEVSEYLPYLTNTEQLPKRQANDSIWDTVQWFMEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAY0</accession>
    <name>A0A6S7KAY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Latrophilin receptor A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A037290</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024960">
        <property type="protein sequence ID" value="CAB4039110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAY0"/>
    <dbReference type="OrthoDB" id="5959886at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15039">
        <property type="entry name" value="7tmB3_Methuselah-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4039110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="492" mass="57017" checksum="42BB9312A700ACA6" modified="2020-12-02" version="1">MIVSSTLYGIIRFELELTNEQTLRLGKANYSNDAISQFENDRAYSTNNLPLHRLLLFSGKFNVTVEGIFNGMKMKETFTVFKTTSRQLACIQKQTYPKGTYTSIQNGKYYYINSTGKTFPRKQVFFEDDTNKSISVCEQIVFSSCVGRRINLTSEEYVKFDNLSIFYNRTKTIKDFGEYEIEGGQISMCIPETYPQLSPSDSLVIQTYLTWVCVALSLVFLFLVIQTYVLFPELRTLPGKNLLSLSMSLFLVQLLWLIPERWYPPTLCYIVAVIKHYLFLVSFVSMAIIAWYTHSVFASKEVQRRRPEKKNIYKYSAIVWGLPAMFVLVCAVVDQKDIYAVYVNELWCLFDNVQAQKYLFVLPVGVILLFNIIFFGLTVFRIQRVHSGTRLVHPDQSHRTMLWIYLKISALMGFGWLFGFINLLAGKSTLVFSYLFVIFASIQGVYIGLAFVVKKHIWQMYKKLLRKNPERFKLEVSSKLLESLKTCKETTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBA3</accession>
    <name>A0A6S7KBA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045853</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027606">
        <property type="protein sequence ID" value="CAB4040998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBA3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9261" checksum="D1480ED195FCE6B5" modified="2020-12-02" version="1">MEKKWMNYFGNHSGFASRPTPRGPSDLAYASLRDHIYPHRQEPRTEERTGGSHSEWLKKFRSDLTFTSGSGHQTSTYPFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCR9</accession>
    <name>A0A6S7KCR9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070959</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013551">
        <property type="protein sequence ID" value="CAB4025342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCR9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16569" checksum="C54CEC15C9B00130" modified="2020-12-02" version="1" fragment="single">MSNEKKTATSSRRFLNLYEKALAEHKDKAKSVVEEETGGEASGVNAEEIFEDAGKEFRQEVINAGDNLVEHARELGERGKITTQERRKFAGVTAPKGPPEVRIKALREQKKVFETNIELETDPERRQIMQEGRDVAKQGIDNANLEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEE8</accession>
    <name>A0A6S7KEE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085177</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027870">
        <property type="protein sequence ID" value="CAB4041164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEE8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="14775" checksum="14A8C02FA982D19F" modified="2020-12-02" version="1">MPDDDPATDLLVALGKPGDDPATDRFDALGLFENQNSPNDLPETLSPEVVWGRENLIGFLESPTESESIATSRPGEETIGLSMDPLRTACSSVCSSGSPQYPPMQYSTPKRVSDDLSGSNTTDTILDFSSAKLISFEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KF48</accession>
    <name>A0A6S7KF48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069663</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028295">
        <property type="protein sequence ID" value="CAB4041424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KF48"/>
    <dbReference type="OrthoDB" id="5982225at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="254"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="270"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="293"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="304" mass="35447" checksum="AB402ACE7947808C" modified="2020-12-02" version="1">MTSLARSYVWWPNMDNDLENKVRTCNNCQINRKNPPEAPLHPWEWPSRPWERIHIDYAGPFLGKIFLIMVDAYSKWLEVHPTNVATSRATIEKLRSTFAIHGFPKTIVSDNASNGLAERAVQTFKVGMKKMSNKESLETRVSRFLFKYRITPHSTTGITPAGMLMSRKPRSRLDVLHPDVRQRVQDQQKKQKELHDQHAVDRQLRPGDLVYSREYGKQQKWCPGVINTQTGPVSYTIQLEDDREVYRHQDQVIHRETPDENENDVRDPDTNQQPVLDQQVVSEENAVPAARYPQRDRQTPDYYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KHA5</accession>
    <name>A0A6S7KHA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A042537</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038349">
        <property type="protein sequence ID" value="CAB4045246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KHA5"/>
    <dbReference type="OrthoDB" id="5956704at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004126">
        <property type="term" value="F:cytidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016554">
        <property type="term" value="P:cytidine to uridine editing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050610">
        <property type="entry name" value="APOBEC_Cyt_Deaminase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13857:SF26">
        <property type="entry name" value="C-U-EDITING ENZYME APOBEC-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13857">
        <property type="entry name" value="MRNA EDITING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18750">
        <property type="entry name" value="SNAD4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4045246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21490" checksum="3610D59DA181EB9F" modified="2020-12-02" version="1" fragment="single">YQYGENGWLWPSATIVLSIGKITSTTKENPFNWARSNAMGRHAEERFLDELETEISKHHEVTKIEAKLVQNYSPCSVCAHALIEFKKKMQNKNIDFSLTIKFANFYRHTLAPNKEGLMNLLRNDVKLELLQGKDEWEAFLNYENIELTNDQYTKLLEMATSEERTNRETNDVKILSVIEFEAIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQ73</accession>
    <name>A0A6S7KQ73_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038418</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016742">
        <property type="protein sequence ID" value="CAB4030263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQ73"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="203"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="426" mass="48778" checksum="4AD20D577C3916D0" modified="2020-12-02" version="1">MQPLTFKKHALCVFSPYHFTLATQSRSGDDCGVDYRKYYIYMLNDVAQKLRSGQDWRSNKSEVDYIYYKLDRLEHMLSLTAQLVNIDDRIYCNISAAKCLVGHLLQDENEESVINFNMETTLTGNRGRPRYIISKEQLQYFMEYGFKGHEMAIMLGVSEATVRRRLQDFGLSSSTNFSSLTDEQLDTIVSGIKKDLVQSGYRMIQGAVEKFGLPSRVRTDKGVENVDIARYMLSHPARGEGRGSHITGKSVHNHRIERLWRDVFYACLFKYYWLFKHMEDTGILDVNNDLHIFCLHFVFIPRIRQHLSHFASGWNHHGLSSEGRKTPLQMWIRGMFEGNGHRASREFWESEDWTAFGIDWNGPTPSPQWGSLGDSSAIIVPELVLSFSEATANANLQSTANPVGETNNHGIDLFVQAISIVQQLHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LAV4</accession>
    <name>A0A6S7LAV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger 862-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011172</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020449">
        <property type="protein sequence ID" value="CAB4034812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LAV4"/>
    <dbReference type="OrthoDB" id="5979408at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF9">
        <property type="entry name" value="ZINC FINGER PROTEIN 862"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="485" mass="55018" checksum="41B9DACE6D0C8405" modified="2020-12-02" version="1" fragment="single">MNGEPHKLALKLEDEEMFKAKPGPLPAYAATPLGKAFFKLNENEKVRVKKLIEIAYVVAKEEMPFTKFVAIAKLEKRHGVELGQTYLNDHACADFVDTIAEIYEEELNQMLKRVHYYSILVDGSTDARSKEKEVIYILYVDPDTGRQRLRFLSLQKVEHATATDVLALIKKAFEHHGVDSLKEHTVGFGADGAAVNLGVRGGVSVLMKDGEGIDWLVTVHCASHRLELSIADALKSTVFSDINEMLQNVYSFYKRSPKKMVQLEGLGEALEMAVSMPVKASGTRWLEHKIRAMNWISKNYGLLIAPLNHLTEDESFTSADRQKFKGMYTKYRNAKYPLFVEYFIEILVPAAELGLIFRREKIDVVEAVRAVKKFFRIMNKLSESSEVVFTTGRVSNFFSNLTNQEEQFIYKDVNLSHIEQAKNSLKSANDDILSTIIECFKGRFDDITNTDNLFNALVKILDTEVYPEQGLDDVYGEDEVKLVID</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LGC2</accession>
    <name>A0A6S7LGC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A062764</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Required to protect lysosomal transporter MFSD1 from lysosomal proteolysis and for MFSD1 lysosomal localization.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Interacts (via lumenal domain) with lysosomal protein MFSD1; the interaction starts while both proteins are still in the endoplasmic reticulum and is required for stabilization of MFSD1 in lysosomes but has no direct effect on its targeting to lysosomes or transporter activity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Lysosome membrane</location>
            <topology evidence="9">Single-pass type I membrane protein</topology>
            <orientation evidence="9">Lumenal side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GLMP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017765">
        <property type="protein sequence ID" value="CAB4031599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LGC2"/>
    <dbReference type="OrthoDB" id="6264340at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029382">
        <property type="entry name" value="NCU-G1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31981">
        <property type="entry name" value="GLYCOSYLATED LYSOSOMAL MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31981:SF1">
        <property type="entry name" value="GLYCOSYLATED LYSOSOMAL MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15065">
        <property type="entry name" value="NCU-G1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0458">Lysosome</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00044960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4031599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="37657" checksum="332BAF9D79DF48AC" modified="2020-12-02" version="1">MGSQRSFWALLCVCFFVVMLVSVDGNRKLFTKVFPCPTSNCTHDSSIIWVKANTTDNNSTIHYLWTTYPVPTIVVAYTTLQDVELLVDWSKLTNDSSRMLGLRFEPAVEYTFGFAIPRIYEYDDDDDNVDLNDNTYMVVHEFTESTKWQVDFDNSTAQVTYTAHDSIIFKFIASHSEDRESELPHQKYTADSNRFSLTLNRMNVSTNSTRFAVEINYIVDEGYKPDITTEKNFDDEYTPAVFKTVYGKVGGKYGKAYSQWKPIAYTKAELGRKYQTKALEGGVENVVNRSWNIGEVAMHELYKIYGLNVSFGLAKDGFYQKHKYLIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LMG8</accession>
    <name>A0A6S7LMG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056421</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024535">
        <property type="protein sequence ID" value="CAB4038742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LMG8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="416" mass="46267" checksum="ED40B3CE2922860C" modified="2020-12-02" version="1" fragment="single">DKVAQAEDKVPHTEDNVPHIEDKVPHAEDKVPHAEDKVPQAEDKVPHAENKVPHAEDKVPHAEDKVPQAEDNVRHDDDKTPHAEDKVPHAEDKVTHAEDKVPHAEDKILHAEDKVPHAEDKILHAGDNVPHPEDKVPNAEDKVPHAEDKVPHAEDKVPHVEEKVAHAEAKVPHAEDKVPHAKDKVSHADDKVPHAEEKVPHAEDKIPHAEDRNFFRKFFKKLGHQSSPYIDDSLLTGQTYDDCADNVIDTTQLIDNLGFIAHPDKSVFIPTQELDYLGFTLNSKTMRRDNASATENPRRSSLRDPSDLILANTDMVAESNEHDCPTANCLAKKQAKIDISIFKAHSTRAVATSAANLNQLPIDIVMVAVNSVIHSTSRLLQTVLDSSAVKSLVDARGNHDPEEKYFSEAITETFRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRF8</accession>
    <name>A0A6S7LRF8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028599">
        <property type="protein sequence ID" value="CAB4041613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRF8"/>
    <dbReference type="OrthoDB" id="5985199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00057">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00231">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01285">
        <property type="entry name" value="FA58C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20519" checksum="F260538CD03026DA" modified="2020-12-02" version="1" fragment="single">MSCANYPLFCIVEEDMVSLGIQSGSYSLSGSSTKRIKISWNNYYSYYAGNARLHGSSAWMPGYTRPGQYLEINFGSSKYITGIATQGTGRWNENNFVRSYSLQYYDGKNWIGYKEFGEKKIFPGNTDVSSVVKNFLSVPTAMQKLRIYPESWNNEIALRIELYSNPSISTQNCIQYTPTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS82</accession>
    <name>A0A6S7LS82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC111338505</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044767</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027223">
        <property type="protein sequence ID" value="CAB4040769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS82"/>
    <dbReference type="OrthoDB" id="6020762at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF13">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="407" mass="47949" checksum="A58F3F750A3C513A" modified="2020-12-02" version="1" fragment="single">FLVDQNEITDEESDDEESISSTDSEEIDEKELITFYFNRGFSYNEIIQFLAKQHNFSISYRTLCRRLKSYGLYRQGFNEQVNSEDILEIVRRRITEIINGPGSCGGYRTVWHTLKMEGLQVPRIVVQEILKELDPEGTERRKAHRLKRRQYHNPGPNHSWHMDGYDKLKPFGFPVHGAIDGFSRKILWLNVTRSNNSPDNIAQYYLNAVGEFNGCPKVLITDMGTENGLAASIQCYFRDELEAHRYVPSTRNQRIEAWWSFFVRNRSSWWRNHFKDMESEGMLDCAAEISMECLWYCFAELIQKDLDFVKEHWNCHRIRKSRHDTRSGRPDSLFFLPEHHGAINLLSMVPQEEIDYVSQHVVYRNSRNEYQEYFDYVMATLGLNRPTKWEEADNLYCQLMAIAENGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LW65</accession>
    <name>A0A6S7LW65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036086</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043821">
        <property type="protein sequence ID" value="CAB4045959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LW65"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="252"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="262"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="33499" checksum="DFEFE6BD36A08690" modified="2020-12-02" version="1" fragment="single">MASDSQSTEGMSGRTADNVMRSLKSYRSHLTRTIVTTKRFIPVVTASIGSSSALSNAKERLISRLNEVEGYFTKILQLTIEAQEFDPTNAEKLDSDLDNDRARTDDLGEKMEKLSLKERQSYLKVLLDTDLNSRLSTTITNETEIFGPESCIAMLQNDFNIRYPLVTRRLEYFNRKQGNDELFTDFLAKSKELANLAEIDNLKKDDVLTFNALRGTTNRELLDEFLKIEEPTLERIEKTAKLYEGKRTTKAKLSDETNQVMKVRETKDNARGRGSGRRGGNNERSKTKGSKSRSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9I7</accession>
    <name>A0A7D9D9I7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribonuclease inhibitor, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A055526</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000200">
        <property type="protein sequence ID" value="CAB3979459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9I7"/>
    <dbReference type="OrthoDB" id="9428285at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050637">
        <property type="entry name" value="NLRP_innate_immun_reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45690">
        <property type="entry name" value="NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45690:SF19">
        <property type="entry name" value="NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13516">
        <property type="entry name" value="LRR_6"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00368">
        <property type="entry name" value="LRR_RI"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3979459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="482" mass="53545" checksum="335843D7D73B451F" modified="2020-12-02" version="1">MSGSDYHDCIMAFTKGLTLNESSITLKNYGNLLVLKCLREVDDEYIIKKACETTDLKLLARLHSSHTFLSATDWEAVTFVCKHLNSLVDLELTDSSRNAYPFMSVGKLLEQKCLERLVLATGKSTSIELAKEVLDAMMKSNCPLNHEHVKLRHLCLTICMTDECVSYLCTFIKNGHASHLQVLKLSDNGITSNGVSQLCEVLNDVCCRELTSLNLNGNDIGNEGVRMLCHALIEGHCKLKELFLDTCSLTAGSLHHLCEVLCDEHCKLTAISLKNNNIGDEGIRILCADALRKQQCELTILDLDSCSLTANCMHAFCDVFQDKHCKLTNLSLSDNDIGDECLRILCTGSLRGEQCKLTRLNLSFCSLTANCILEVCKVLVDEYCKLSELLLSANAIGDDGVRMLCTNALKEEECKLTALSLDYCDLTDKCVPLLCETLQHGNCKLTELALASNEFTEEGKNLLCNVERNECCKARGFRFGEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFZ0</accession>
    <name>A0A7D9DFZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sodium potassium calcium exchanger 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022569</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000790">
        <property type="protein sequence ID" value="CAB3984816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFZ0"/>
    <dbReference type="OrthoDB" id="5962822at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004245">
        <property type="entry name" value="DUF229"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974:SF39">
        <property type="entry name" value="E2F TRANSCRIPTION FACTOR CC-MB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974">
        <property type="entry name" value="FI08016P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02995">
        <property type="entry name" value="DUF229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="909" mass="104380" checksum="024ECA44DCDCD95A" modified="2020-12-02" version="1">MKHRVGFRFQTNRLYKETRQTIDLELPNAESETNPVKFLVKEPIESTITPTEPIESVDPTSAVFPTFETYEEMLQDDTHASKNRKFPVYSACTRQGLRKPLARSMSKKSKVPKCRGRQLTPGDCTDVVKYFGEYGSVKAGQCDTNNAIKICTVSEEEIQVSCDASPCKHKRISLGLFSHTIGKIEWQLVRDINRLSVLLENRIMSSEFGRGFALLKCEDGQGIQVLTFPKRLDRMEAVQKQGKRRFNINIVLEDSLSRAHFYRTLLKTSSTFRDIIYNQSIPSTLLEFEKVQSYASSTYSNLQRLFISQKYWNSKTHCGYRIKEFLANNTKYCTYGVEEMFSRYKKAGYSTLLQEDNCWYDDWGSFLDPRKGLARVKNEKSRLSRWKDFVQIVKKSGRGQKVDDYGMSILTCDVYKNYKVTNPFSSRAVPNICFAGRHYGSFFLEYVKKYTELNDIAAQPFIAYTHLLTSHETNGRRIVNDDESLADLFYHAAHLRNTVTIFTSDHGAKATDFAAYTTQGRQEVFQPLLFIIIPHEVSKSLGPEAMNALVVNQNRLVGLEDLHHSLVSILDMDPNIWATHKEDHPENWDLHPGSDKKKWVLHADPHRDVNVGVTPTRLRGLFKPVPLDRTCEQMKLRSDVLCLCEGMDKSVSNDSETVQWAAEFALGTLNNRIQKQYTTALRSKPEGLASGFYGYGACQRYTGTGIMRARHTVAGLEQKLFFSLLAKPFIRKTEEIFDVQVSFAMKDKANGITLNDMIRVSPYNKYEKCTDKGVDPKLCACHADRRNNTLWRNELYLKTTTQENFKLKPRTQILDQPCLAIISRVRRNNIGAGRWQNAIETYEAVNACPDVTYKLTISFKKARKTQISLKYPKSVTLLPRTVTFLLTAKNEWKYGTFIPRFKFEKMEKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKC3</accession>
    <name>A0A7D9DKC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037234</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001151">
        <property type="protein sequence ID" value="CAB3987295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKC3"/>
    <dbReference type="OrthoDB" id="5949401at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="293" mass="32800" checksum="8F9B2A2B9E9121E6" modified="2020-12-02" version="1">MGLLFITTLVVVLQNAAQPSESLSVTNYGTKQISMMRHGEKYATNRPCYAWEDVQPKYHGMTHIRGINDKVGSFIFDVDAPVFVYLAVDSRYPYIHGIAFENTHDKFMLGGCHSRTPFHIYRSKKALGPGKVVVKFNASRMTGVLVRDARLVQPAAELKIAPLSSTHAELSMVRDGEKFSTNRACYTMTNIPPRFYGLTHVRLLNDEKSISFQINVPAIIYVAIDSRYPNILPSTFVFTGEKIVHAGCHSPTDFPVYSQKFAPGNVAITLKKLRMLAVFVEPIVDNTFKSGIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DMB0</accession>
    <name>A0A7D9DMB0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NADPH oxidase 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A037465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001365">
        <property type="protein sequence ID" value="CAB3988695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DMB0"/>
    <dbReference type="OrthoDB" id="167398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019900">
        <property type="term" value="F:kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019722">
        <property type="term" value="P:calcium-mediated signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045198">
        <property type="entry name" value="CNBL1-10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23056">
        <property type="entry name" value="CALCINEURIN B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23056:SF110">
        <property type="entry name" value="CALMODULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00450">
        <property type="entry name" value="RECOVERIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3988695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="27807" checksum="6580BF353EE6BE7F" modified="2020-12-02" version="1" fragment="single">RDGKKKNNKTCRWFTEYFEDVCGKDSDIHLAEFRSALDDETFTENVFDLLDSDQDGEIDINYLVSSLDLLERASTDTKWFLWIEERINISMAEVRKLTFNRFKKALHLEKTFFAERFFTLFDDNGDGMIGMKELVAGLELLTNGTVADKLTFLFRVYDIDGNGYLSEDEMRTVLTSCMEESKLKFDEQQVDELMEVLFEEIETNHKGEIGLEQFKAFLSKHPGVTEHLSIRYQNCARY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3B5</accession>
    <name>A0A7D9E3B5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tubulin-specific chaperone D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040657</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003627">
        <property type="protein sequence ID" value="CAB3999614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3B5"/>
    <dbReference type="OrthoDB" id="10253476at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016328">
        <property type="term" value="C:lateral plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048487">
        <property type="term" value="F:beta-tubulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034333">
        <property type="term" value="P:adherens junction assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070830">
        <property type="term" value="P:bicellular tight junction assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000226">
        <property type="term" value="P:microtubule cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007023">
        <property type="term" value="P:post-chaperonin tubulin folding pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007021">
        <property type="term" value="P:tubulin complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058033">
        <property type="entry name" value="ARM_TBCD_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033162">
        <property type="entry name" value="TBCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12658">
        <property type="entry name" value="BETA-TUBULIN COFACTOR D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12658:SF0">
        <property type="entry name" value="TUBULIN-SPECIFIC CHAPERONE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23579">
        <property type="entry name" value="ARM_TBCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25767">
        <property type="entry name" value="ARM_TBCD_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tubulin-folding cofactor D ARM repeats" evidence="1">
        <location>
            <begin position="129"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="395" mass="44633" checksum="311BA09633C7D419" modified="2020-12-02" version="1">MVPFDMSRFDGDIAQTSDQKPITERILDFAKVYLNVVDKCRDAAALVIAKFVTRPDVKTRYLPEFLTWSLDYLSKIDARTQAGTNKMTGILSTLALLFKHGKRADLITHARTVRETVESCDILTVNNSLLRKLYVKLIQRLGLTFLKPRLAAWRYKRGTRSLSHNLAKSVQEKTITDIQVMENENELDENFDVPEDIEDIIEILLIGLKEKDTIVRWSAAKGVGRITGRLPKELADDIVGAVLDLFSFQETDSAWHGGCLALAELGRRGLLLPQRLSEVVPVVLKALLYDERRGAISVGSNVRDAACYVCWSFARAYDPVEIKPYIEEIARGLLIATLFDRDINCRRAASAAFQENVGRQGTLPHGIDILTKADYYEVGKRKNTYLTIRWVGHYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBI2</accession>
    <name>A0A7D9EBI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Poly [ADP-ribose] polymerase 15</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A048317</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005513">
        <property type="protein sequence ID" value="CAB4006456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBI2"/>
    <dbReference type="OrthoDB" id="406099at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990404">
        <property type="term" value="F:NAD+-protein mono-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010629">
        <property type="term" value="P:negative regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070212">
        <property type="term" value="P:protein poly-ADP-ribosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01439">
        <property type="entry name" value="TCCD_inducible_PARP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="entry name" value="Leucine Aminopeptidase, subunit E, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052056">
        <property type="entry name" value="Mono-ARTD/PARP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012317">
        <property type="entry name" value="Poly(ADP-ribose)pol_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453">
        <property type="entry name" value="PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453:SF67">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00644">
        <property type="entry name" value="PARP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51059">
        <property type="entry name" value="PARP_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="726"/>
            <end position="748"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="726"/>
            <end position="747"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4006456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="850" mass="96875" checksum="A06C442504C524BC" modified="2020-12-02" version="1">MKRMRTVADSDSATSESDVENSYNTDNEVETDSVSESNFDNVDDTSSESKRERNAANLRTWSKTEDLETINFLQDMKYFAQLRKDFPDVTIDVFAENLVNNVRIQEQRCQDKEFDEVIEKYRKDLSKLQKHSVAMGLGETNIWDIIVRKEAQNYIQDILVRDKIEAKVTPSEDGSKFVQIVAFNAMDIDRAKGVVAQTFIHETVLIPHDINLSTKAGELRELEQFCSQIQRGKPIKVQVIVEGSRRLVELVGVADIMNETKSAVENVLQDKRIKVEHFQMTVSDNIWDFLHHQFGSMIKPIEKQLDNCYVIINLAEKPKVLLLEGTTDGLRKCKETLQQLIQTIVQKDEIITSPDVQSLFASEVGKYQLKLIEKDLDVLIKKSQFMDLLFPSENATVSQSQMHRNGGVKITMRNGRIENEKADILVNSAIQNLKINTACLGALKKRGGREFIEKCEQHTNIPQGDIVCTSGGNLACQYVIHAVCKNWNNDEPAKSEDFLRHLMKKILEKCIELGASSVAMPMVGAGKHGYSNDLVSEIICDEVAQMFTEKGSEFSLNNIRVIIFEENEIQGTKSFSIDSPNKIILHFIGLQQHVDQSFAKVKIFVDTLNQNKKKKQEKEMHRSSSSVSINLPSFWEQQLKEKIVLVELEESSDEYKEILNHFHENWNYKKNIMKPSVKKIQRIQNPDLYYGYCVKKKSMEGRENEMRLFHGTSTENIPQINCQNFSRSHTGATGQTKRSNPSASQKHGQGVYFAKETSYASRFCKDDDNEKADVSSKDLQMYVVKVLVGEFTIGTREMKTPPLKNDPANPGLPFDSLVDNLSNPTIFVIFNDNQCYPEYLITFTRLSTVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EK66</accession>
    <name>A0A7D9EK66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027088</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007304">
        <property type="protein sequence ID" value="CAB4011890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EK66"/>
    <dbReference type="OrthoDB" id="421040at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12135" checksum="4487988D443E8000" modified="2020-12-02" version="1">MHKWYNEPEILPAIGLSDHLSVLATPAVQAKQPNNIIKKTVKHLKTADPSKWWKAVKNLAGYTSDKSFHSVINDNRILEGKDLANAINESFVAVNKSMPLFPNSINNSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELD2</accession>
    <name>A0A7D9ELD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033686</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GID4/VID24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007216">
        <property type="protein sequence ID" value="CAB4011634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELD2"/>
    <dbReference type="OrthoDB" id="62at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034657">
        <property type="term" value="C:GID complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005773">
        <property type="term" value="C:vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045721">
        <property type="term" value="P:negative regulation of gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007039">
        <property type="term" value="P:protein catabolic process in the vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018618">
        <property type="entry name" value="GID4/10-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14534:SF3">
        <property type="entry name" value="GID COMPLEX SUBUNIT 4 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14534">
        <property type="entry name" value="VACUOLAR IMPORT AND DEGRADATION PROTEIN 24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09783">
        <property type="entry name" value="Vac_ImportDeg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00061469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="23931" checksum="794CD2F28C1A64AD" modified="2020-12-02" version="1">MPGLKIRCDPLPPKTNQPGLPRSLLYSGSRFQGQQKSKGNSYDVEVVLQHVDEENAFLCGYLKIIGLTEEYPLLTTYFDGEIICDKHPFLTRKWEADEEVDRKHWGKFLPFYQFAKHFNSDSFDFSQLNNLDFAFMRWKEHFLVPDHTIKDINGASFAGFYYICFQKSTATMEGYYYHKTSEWFQTLNLHHVPDHSQSIFEFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EM23</accession>
    <name>A0A7D9EM23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023278</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007965">
        <property type="protein sequence ID" value="CAB4013645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EM23"/>
    <dbReference type="OrthoDB" id="5969324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="18298" checksum="14716C8C285CE3F2" modified="2020-12-02" version="1">MEKYCVSCHMKIEENSYACKCGHVHETERKWIRGKRYSVYREELYSKLTVQELQQKYKTPKTKSGMQTHKISPKKRTRKSKFVKLPKRRKNQYGGKPRHVYDTSADAGHSHKNSEKFGDNSENFCPTRWNFEFALEDINRRFLKQSLFWIRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EMY9</accession>
    <name>A0A7D9EMY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A033630</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008193">
        <property type="protein sequence ID" value="CAB4014194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EMY9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="134"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="34"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="146"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="156"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="168"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="20574" checksum="B332EA18985D6843" modified="2020-12-02" version="1" fragment="single">MQGEAGVSVKYEVARILNEKLKFEEENYALKEKVNNQSYLISELSAKVKDLENERSSLLTVVRILQTEADNATQEWKTVEPRRQNQTDKSRIGHATTVKDGKYQTTNRYEILSDTTAADSEVNEIVDYHERNNESRRMTAKHRYGKSSNVSMHMQTTSTSSLTRTNLKPKEIHHNQQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ES21</accession>
    <name>A0A7D9ES21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A022949</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mab-21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008088">
        <property type="protein sequence ID" value="CAB4013949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ES21"/>
    <dbReference type="OrthoDB" id="5952992at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1410.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046903">
        <property type="entry name" value="Mab-21-like_nuc_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046906">
        <property type="entry name" value="Mab-21_HhH/H2TH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024810">
        <property type="entry name" value="MAB21L/cGLR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656">
        <property type="entry name" value="CELL FATE DETERMINING PROTEIN MAB21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656:SF42">
        <property type="entry name" value="CYCLIC GMP-AMP SYNTHASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03281">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20266">
        <property type="entry name" value="Mab-21_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01265">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Mab-21-like nucleotidyltransferase" evidence="9">
        <location>
            <begin position="259"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="Mab-21-like HhH/H2TH-like" evidence="10">
        <location>
            <begin position="330"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF20266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4013949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="445" mass="51603" checksum="125275CB4584ADE3" modified="2020-12-02" version="1">MTQASSVDYSTLKYNLLKMWLPVTGVRTPVDLWTRNFENYFGDKVYCVMQDWLRQNNKETTPDFLCKPHFENYFDSRPPFEIDEVILSGSCSEGLFLYSREPSDRDFMCVLKNITFSLEDQQNGCLWLREDTPFVYAFMTSDETQNLWCAFLDNADKGTRKHRLSSRKLKEKLQENSQKTANNNICSAIFGRDEEVTEGAAMTISKPEFGTSDWNRLVDFLTKFLNNPINEELGGEIEYWVSNGGLPDLFYTRAAQASDVVLAIFCEGWPSCAREWITRKRLWPDMNSVEKISNNGYHIVPKSSPDGDFRLSFSCVETMLVETLIPLQRRVMRAFKAVVKYHENTWSPNLKNIISSYHLKTIAFWHFERTSQESWTEDTLVHHLVALLEELAEALRIQNLPMYFMPKVNLVQDVDNPEVTLDLMEKISQLSQNFCAMSEAINNNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESN8</accession>
    <name>A0A7D9ESN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="19">Retrovirus-related Pol poly from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A067320</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The aspartyl protease (PR) mediates the proteolytic cleavages of the Gag and Gag-Pol polyproteins after assembly of the VLP.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009114">
        <property type="protein sequence ID" value="CAB4016427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0229">DNA integration</keyword>
    <keyword evidence="16" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="14" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="14" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-1188">Viral release from host cell</keyword>
    <keyword evidence="15" id="KW-0917">Virion maturation</keyword>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="217"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="798"/>
            <end position="820"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="18">
        <location>
            <begin position="237"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB4016427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1382" mass="158065" checksum="AC881B2C094476A5" modified="2020-12-02" version="1">MAEITKIDKLNGKNYQSWKYNVKLVLMERGLWGFTQEGKEIPPDEDATNAVKNAFQLRSDKAYSLIALNVEKHLQIHISSTTDPLAAWTNLKKQFEFVSVTQVVRLNRKFYAATMEEGGDLMKHLTYMTSLAEQLREMEEDISSKKFATVVLGSLPESYDNLLTSLNARKAEELEWDNIKGLLIEEYLKRKEKFENNKSDNALLTNRKSYMSRGRNYDRRRHGEHSRNWTPVDYKPSWNTNKGGDTLTPAAQQQRDDGRARNILCFKCNKAGHIARNCPLNYRKGGNKGEHSKLAEGGGVALISSTGNSNDWYVDSAATKHMTNRKDLIINYTQYQTPVNIYLGDNTCIKALGEGMVKLYTQNDNTFYLELHKVLYVPMLAKNLLSVPAMASMGAKVSFDDEKCVVYKEDKEYVIGKLVDGMLYTVNPVEFAHPTTEPLDMWHQRFGHLNNGYVNQLMKNDMVTGMMYDESKQVEKDCKGCSMGKMHKNPFPKASLHRASRPYEIIHTDICGPMQVESIGGSRYLITFTDDYSRYAVAYFIKKKDEALTKFKEFVNYVENQDGNHNKVKILRSDNGGEYKSNSFSKFCTEKGIVQQFTCPYTPEQNGVAERLNRTILESARSMIYHANLPLVFWAEACNTAVYLHNRSPTVALKDKTPHECIFGEKPDVSNLKVFGCMCYVHIPDSNRRKLDQKSYEAIFVGYPTGTKGYKVYDVKRRKFMISRDVQFLEKKFHNFENPKNDFAFDQKERIEVPDDEKQTDELFDLDRVDELDQTFNEDHDEFRVDPVVETNINLNETMEQPVNPENDEPVGESETPSTSKTYEERFMENVKNLGTVRQRMIPSKFRDNACPVVESLTSEVDDPESVQRALNGKYAKEWKDAMISEYSSLLENDTWELVPPSDDQNVVGSRWVLKVKRKEDGSIDRFKARVVAQGYSQTKGADYDEVFSPVARHTSLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPDYLCKLQKSIYGLKQSARCWNDTLNGYLKSRGYRKSGADGCIYVKSVKKDGGRISFVILGVYVDDIIPVSNDIQMLNSEKKALSERFKMDDRGEVHYLLGMLIKRDRKARVTTISQRNYVERVLSKLGMESCKPVSTPLEPGTKFSKLSNEDEKFDTQTYQQAIGCLTYLSVISRPDISAAVGALSQFMAKPSKNHWIGVKRVLRFLKGTLDYGLKYSADENPTLVGYSDSDWAGDINTRRSTSGYVFQVANSTVSWSSKRQRTVAKSSTEAEYIALSLATQEAIWLQRLLYDVGFKIRKPITIFEDNQGTIELAKNAKYHNRTKHIDICHHFVRERVQSKEINVVYCRTDDMKADILTKGLARSSYEKLRDLIGITSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8I3</accession>
    <name>A0A7D9H8I3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000042">
        <property type="protein sequence ID" value="CAB3977335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8I3"/>
    <dbReference type="OrthoDB" id="6005351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19857" checksum="9E8561F5455B7DD4" modified="2020-12-02" version="1">MTEFATCSSAIIIPEERLDVKANCFWLRGATTFFDVRVTHVNSKCNQGRPTQMIFKEYLNEKKRKYQQRVSGVEMGSFKPLVFGTNGGMGIECQMFLKQLAQKLAEKDNERYAVVIAWLRTRISFEILRPVNVSVRGSRSPFYRKELEVVDDFGLNRPRPVEFFIFFFKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HHK2</accession>
    <name>A0A7D9HHK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A007443</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000330">
        <property type="protein sequence ID" value="CAB3980848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5975244at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20397">
        <property type="entry name" value="Tudor_BAHCC1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001025">
        <property type="entry name" value="BAH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052429">
        <property type="entry name" value="BAH_domain_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043151">
        <property type="entry name" value="BAH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048924">
        <property type="entry name" value="BAHCC1-like_Tudor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056841">
        <property type="entry name" value="TNRC18_BAHCC1-like_SH3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047419">
        <property type="entry name" value="Tudor_WGE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12505">
        <property type="entry name" value="PHD FINGER TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12505:SF24">
        <property type="entry name" value="PROTEIN WINGED EYE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01426">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21744">
        <property type="entry name" value="BAHCC1-like_Tudor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24912">
        <property type="entry name" value="SH3_TNRC18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00439">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51038">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="40"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="257"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="320"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="531"/>
            <end position="682"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="813"/>
            <end position="919"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1156"/>
            <end position="1191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1519"/>
            <end position="2101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="2236"/>
            <end position="2368"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="987"/>
            <end position="1142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="54"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="124"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="163"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="180"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="205"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="220"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="264"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="320"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="353"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="373"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="394"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="531"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="588"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="605"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="632"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="659"/>
            <end position="680"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="815"/>
            <end position="862"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="863"/>
            <end position="883"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="884"/>
            <end position="901"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="910"/>
            <end position="919"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1164"/>
            <end position="1177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1179"/>
            <end position="1188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1519"/>
            <end position="1536"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1539"/>
            <end position="1548"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="1549"/>
            <end position="1558"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1564"/>
            <end position="1576"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1583"/>
            <end position="1594"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1628"/>
            <end position="1649"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1650"/>
            <end position="1659"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1663"/>
            <end position="1672"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1694"/>
            <end position="1704"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1808"/>
            <end position="1835"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1901"/>
            <end position="1910"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1911"/>
            <end position="1921"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1936"/>
            <end position="1946"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1951"/>
            <end position="1961"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1968"/>
            <end position="1977"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1978"/>
            <end position="1987"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="2000"/>
            <end position="2009"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2026"/>
            <end position="2035"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="2036"/>
            <end position="2053"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2074"/>
            <end position="2087"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="2088"/>
            <end position="2101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="2250"/>
            <end position="2260"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2265"/>
            <end position="2276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2307"/>
            <end position="2333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="2352"/>
            <end position="2362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3980848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2560" mass="294019" checksum="E9FD6C2619628F48" modified="2020-12-02" version="1">MQHPLAGAMFHGPMFPHMALPPEAHFYYPSMYPPHPFALGNPPVYAEPMITGSGKRERTGAETDRKEYRDTESETRDRNESSSKRDGSPKTWRTEAPETMRKESVIKSVVKETTENGKTSNEQRTNKESSRNIDQRSVKLDYQRKDDREGMVSSSTNKFPIGRSEERSPPILSRGHDVTTRPSETSHQSFVSSSPLSGKSVDNPHYTNGTPSYSYLSPRKAYDPLSSHRRDMRARDVDRRGYMDTCKDDARVIMDKGGINGVKDSSEKVRDNEETKSRNSNDRDELAYAKFLKRGDRFYGDRNEKRLRYSEELMNRHARREEAIKRDRRREESERGRSPPSNETPDRVKPNFPVTTTHSVETIMNGRPSPAKPSERSNDETRAKNEWSAQMSERVPEILDPKRMEVASRDDMSREQRVLSRGQSREDQESRGQQSRDDHEPRGQQSRELDRESRDREQRLRDQSSEKDNVKIAERERRRYEAAVNEHLRAGRYFDPRLVNPGFVDHRGIDARLYAANGNLRGIDPRKYDPRIRESMDMKSKRILDEQSDEKHRSEERIPRRNETSNDRTVPEHLRVSHNDDGRPRSAPQCSTRSVSPQVNGADGKQSRTEIKSRGLDTASHPETTEAKRNESGNTIGQSMPSKTRSPPNNDDVVVSKGNGSNESSRSSSVSRPGTESSVSNAMRTGFGNLVMTPSGAGYPNLQMLNSDPYIQQLLLAQSEGRLPMFFPMPNGMFPHPGADASHGLNEYMLKAWEMLQDPSIQMHLANRLAMQEKALLSYPPHVMTAEQQQFLELQKRQQQQLQQLHQQQQQIQQEKLDSRRAKEAEQDLKVKSEEAETKQLQEKREQEEAAKRRKEEEEKQAKAFQKQLQEQQRLRQQQQQQQFSQPNEQQVPKPVNSEQQKQTRKEGLQSEQEQSVVKQSQLLKHEQMRKQLQQQKDREIFQQQKQEKDIQQNQQFLLQQTVKQLQKQQQQQKEHKLVQQQQKDDEQRLQQQNLLLKRQMEVLQQQQIQFMQWHQQQQQQQQQQQQQRQQQQQQQLQQQQQLQQQQQLQQQQQQLQQQQQLQQQQLQQQQQLQQQQIIIKQEVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQIIIKQEVLQQQSEQQEQRKNIPDQTVSFENSSFKQQPVKDESKPTDIQKVNLPTSESFVKEERSRFQFPEPRLVQDVQLPRTTLSPPVVSEPLPTVTDVGARHDIGELSPNCVSAAEVLSRFRSSGALRFLENGVWEEAEETESPAHEMHLSTSSTPQGDEIRFTFHENPENTDEVLENSAVKPEPVMAVGNPGQTRCRGDLSELVRAVEQFGVPDEMECGNSGGDLTPELCVKTEEDLLSDGCDAGELSPLSDYGENDCWWWISRSPCVPSARRIPQYLEDKENICAQMKRSEKNRQNICENINRLRKEAKRGLTKATKDRYATLANNHKLILDAESVLNSACTNIKAATEIDGLQEILRDQLLSIQKTYRERHRELARLTPKNKDKHEDSPVKRGPGRPRKRKNFSNSKSNMNNEPDMSAANSPAADQTEMGSPSPEANPDDDIEEGGEAEETKCETDPVGICEDNGQEEDTKLVAVDEAMQENENHDSLTKNTWPEHGEQLHEAEPDERPDEAEVVSKKKAKKKRRRIISDSDPENASRVSETSDNKPKKAKKTKKTSKSKTSEGEGERKKRSKPKQGDDDVFASDNGEQGLNLLAEYSIAASGENQDGKVSPKKRKRSTVSDDAPTSKQRPKKPAKLNLKSPPKDDSESANVEIPTKLTEQPMKDPELVTKKAPIEYPENVEKSSDKTCKTRPLTLPCLSTNDEFFPRRSERIFLSSSSSVNSPTTTGGFEIPTVNKKKPKTPSGKIVKKKDQEYPDQESAIEESSEKETSGENCKKKKKVKVKQQEDKKKKKLKSKRKGSLGEFTDEEYDEQTFVEEIKQLPKRNRHAPRRYIEYDSGEEKVDDAETSVNEQAAEDEENAESDAEKTGAECDVNTEPPEQEHSEHEPSEVESETADDTNAPQEEEGLGTTVEENAPENVESDENNVSEEKDTACEEKAEKEDGELDDEKTTEDVEMANVENEKGKAPFPWMFSMAELSKGQKMLLPVEGVYYPGRIDAIHVPDLYAIILDGERGRRPHYRSSDQLLAEAVKDVQPLSLDDIPITTRVCAYWSQQYRCFYPGLVSEVPEDEKIGRNSCWVEFDDGDSGEFPLPDVRMIPPDFPQENNDSESNSGLPEPNRPKKSEQRTGDEGLDDDLVSDSGDSTVENGHDRTRDKRRRDKKEYERKPTKYRTFSEDSKTSRSERSNAKRKVKSNLGKDYTREEGDTRDDEGEMEWSGDVFSDEGPLRRKRFTKYSPADTSGGEEPEVLVFPPDRIWRWAGKPCPNRRKRGGRKVFYKSIYRGDEHISVGECAVFLSSPSKNPNLPYVGKIIKMWERFNGSKVVRVKWFYHPEETKAGRRPSDGKNGLYLSSHVDENDVQTIAHKCEVVQLHDSKNHRNTKSSTDSDSDVTNNNIFWCLGTYDPLTETFPSDND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKR8</accession>
    <name>A0A7D9HKR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054476</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000795">
        <property type="protein sequence ID" value="CAB3984863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5983947at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="206"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="237"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1599" mass="180611" checksum="4A21CFDDC18DDA60" modified="2020-12-02" version="1">MNVEDKKQERSMVKMVVTVAARRLIGAYNRDCEYDILKDSMFELEKLFDEFCVINEEYELIVSDEKYAEHRVVNGEDIRTYRDNIKRCYEEARSVFVSVKTTIEQKARQQSAGPVKVFLENDICRIHELITVVDESFKLDNVNMAALQPDKSDLQSILNIICDNMAKLGSIETQEEVNLIQEEVDAIIRAINTNIPPEDTETINTMSPPGNQHQHPPENTETINTMSPPGNQHQHPPETINTNTPPDINTNTPPEDTDTINTMSPPETNTPPETISTTSPSVINTNIPPEPIYTATHPEIIDTPAIETNTIPPMLPINAPPINYSSPFGTQVTTNITKANTPLPTLPGTSTGFCLNTSAQTFISSTTFHSESSSTSGQTHLSQQCQNPTNLSTGFPAFAMPMGSNLPRVASSYYSNHNQTRSNLSTSPMYTTPSGHQPTVPSINTRPSHQDFTIRLKRMALPTLFGLRKDWPEFKAVWKSMAESASYNKTALAHELKNSVKGEAKHRIKSVFVTKPEAYDIMWEKLECHYGDTTASVQAALEDLQRLKPVKEEDYKALVELVDEVESAYSQLEELNQLNTLTMRDVDNLTDLLPTHLIVDWRRKYLDLSSAEKLQPFTPLMKFLDRERSVVARLAENQHFKKRGNDNARGGYSKTYHVERGAKHGKRTYYKKLNCPKKLPCSSCGSDQHHSLLCIPPKLSKDSGEKSKTGDDENKELASYTVGSDSMALYPIHQATISDSGRKVSVFCDGCSSASYITHRAEERVKAKKVKKLSLDVTTMGNVEKTYNTWQYEFPINTSAGKKVTITAFGMERITGQVSKLDPKVLVKLFPEYDPETLQRKSTHVDVLLGCDYFGLHPKQEEARCGDNLSIMNGALGICLQGAHPDLIEETRYDTNLAKKIHDVNVKVETYKTRLDSHPEFHPNHTRECSVNVSSSYSHRKDESQIDNFIQGEKLATEISPQCGGCRCNKCPTVGHTYSFKEEQEFKLIQENLEYDEVNQCWKTSYPWLVDPQSLHDNYHTALATLERTERTLKKDDQWAKTYKRQMDDMVDLCVARKLSSEEVKSWTGPVFYISHLAVVNPHSNSTPVRIVFNSSQAHKGVSLNACLAKGPDSYMNNLQHRPPDIYVIQRVNMGDTPAPAISTEAVYKTAELYREDSPQAANLLKHSSYVDDLIDSRPSKPDALKIAKEAEDILAKGGFAVKCWKFSGETQPRVKEELLKLDLPEKSVESLDQGLIMLKGTDENLRVLGLGWNPKKETITYEVTLNFSSKRRGVRTGPNLLESDLPSALPNVLTRRIVLEQVMKIYDPLGLISPFTLMAKIYLRETWSRKLGWDDPLPAELCNKWSNFFTALFKLQRLCLERCLRPGNSDGRPWLIILSDGSDLAYCFAAYIRWKLDDGSYWCRLIMAKCRIAPINKLSTPQMELNAAVLSKRGRKVIEKEMRFDFERVLQIVDSEIVLSMIHKTSTRFKVYEGVRIGEIQAATGGDLTCWAWMSGQHNTADWLTRGRAPEELNNDSHWWNGPPILYRPIEEWGLKFNPRKEPLPGEKKVHVVAAASVEALLIDYERFSNINKAIWVVARLLNIAKKKSFKGGRTLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWD2</accession>
    <name>A0A7D9HWD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039942</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001967">
        <property type="protein sequence ID" value="CAB3992038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWD2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15162" checksum="FED586EE69761D37" modified="2020-12-02" version="1">MAEAEHDNALQCEDREKQLVRELVKFNIYGEQTTLDGIIEAAEKNLKETQARVKELKTLFGGELNEDQKHLGIVPSSSKTNEVPVSSTEVDMDDENIPENKESKSVNDSLRKLHRRRRYKYCCQGLPAISKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWW7</accession>
    <name>A0A7D9HWW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006339</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002037">
        <property type="protein sequence ID" value="CAB3992381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWW7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="10410" checksum="D8A9B8CA32CB6858" modified="2020-12-02" version="1">MRLTVEEKRKMRNERKKRKRSHKSELKRAALIKDALREVQRKTDEQRSIASKYYKLWRRSVETNKKLQNKLDNRESSIKKVYKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I1G9</accession>
    <name>A0A7D9I1G9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Neural cell adhesion molecule 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043990</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003496">
        <property type="protein sequence ID" value="CAB3999022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I1G9"/>
    <dbReference type="OrthoDB" id="5982521at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="35198" checksum="DA8FFFB881C7A37F" modified="2020-12-02" version="1" fragment="single">MDGDAERICKRCHGCQVVGDFRAPEPMQRTEPPSGPWKDVAIDLLGPLPSGENLLVISDNGAQFVSEEFEDFLTESGIQHRKSPPLWPQANGEVERENRTLLKSLKVAHVENKKWKDELNKFLLAYRTTPHSTTGVSPAFMMFGRELTTKLPELRPDKNILNESIRDRDWNKEVAGKEYADKHRQANQNPINPGEKVLLKNSKTSGKLDPKFETKPYIVQTKEGQELTVKSDEGVADKQTIPNDSVEFATALRNIRYLCPTLNWAVNFPKNTTTLVNTVITSSLIVVTIVVMLKRACNPARRVYDGTYATFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I456</accession>
    <name>A0A7D9I456_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nephrocystin-3, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061378</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002789">
        <property type="protein sequence ID" value="CAB3996059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I456"/>
    <dbReference type="OrthoDB" id="5960303at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049945">
        <property type="entry name" value="AAA_22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691:SF3">
        <property type="entry name" value="HTH-TYPE TRANSCRIPTIONAL REGULATOR RV0890C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691">
        <property type="entry name" value="REGULATOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13401">
        <property type="entry name" value="AAA_22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ORC1/DEAH AAA+ ATPase" evidence="1">
        <location>
            <begin position="291"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1140" mass="128669" checksum="199D9331469F6334" modified="2020-12-02" version="1">MAVKPFSEEELNFFKFSSIVLDEVPTMLRQTFITMWDNKISTLPGYQVWDDSAMVRNLLLTREGGKADIPTNKSINEWDCTALFKATIYSNTFGLTTCKSTKTLCQQYLKGKKPSPFHSSVISLSGNPDETVTLAIDQLRLLRNTLCHIPKPKISKVDFNYYIQLAKDAFTATGVPVVRIDDIGCLKEEDFPTAKVNDLIDGMKTELQETNKFLQQEVMEEISGFKYAQATFLQDIDEKLEDVKMDIIDQASKNANFQTIPDSCVPPLVPDFVGRNEECQAVGKSMMSQSTRLFSIWGSPGFGKTSTAIATGNQLKSQGESVYYFSFRGVNTMKEFTSKLLSLFGRSTELNRNVNITPADELLRAFRSINTRVFVILDNIDDLLTSSDKKEAVINFTTDVLHRCPNVCFLTTTRESLEFISLRLQGFDSLRLKPLDAQSSETLILKFLPLSTAVDIQSQISKMCGHVPLAIRLLCTLIKDCPREFLDEISHGSEGLLDVIDDPDYLSHDARLKQLIQVSFDKLSTVEKEAFVCLSVFDGAEFGLDAGIAIIGGGKLQAKRNIENLKRKSLIDVNGDREMYTVHPLIQSFALEKGEKEMKDVLVSSKARFVEYYIELFHHLNSRFTKGDSMIAFKTFFVEEQRILSSLTNGLNDDVLLQKVVDVLQKCEFFLDSLYPNSLWKLNFYTSRLCPSRTISVLPPEDDETSRKISLLPISVQGKLLCYKGIYELSNGGGETAAQSIEDGLLQLSNDSEHVILKILAFHFLTIYYKCTGNSVRCEQYRAKAVETCTVNSAFLLLPLFGKPWINGEELDATFSSNQPLIAWAIARLCLWTRNYPWADLDTELGNMLDEFSKQISRLSILVWTAEVCTLLQLCDMAYIHLRISGNSSDVETTIKGIQKDVENMEDERYKNAKDVDETQERLLSLHERLAAYYHTIAVQRFGKGESVLEFFLKELEIRQQLPLDGKLAECYRCVGREQNSRQQYRSALESYKCALQTLQALHGEIHAEVATSYYNIGVVQDNIGDSESSLQSYFCALKISLGLYSGHHPHALMIQERINRHPFCLLPRDKEEHCGENTTHMNDVAPTKCSSALKGKTFTPTNALSYHKQNTEINPESELYRVLGGNGQHSETVQCCFFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I460</accession>
    <name>A0A7D9I460_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Dispatched homolog 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A071751</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003992">
        <property type="protein sequence ID" value="CAB4001059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I460"/>
    <dbReference type="OrthoDB" id="193905at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007224">
        <property type="term" value="P:smoothened signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052081">
        <property type="entry name" value="Dispatched_Hh_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45951:SF3">
        <property type="entry name" value="PROTEIN DISPATCHED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45951">
        <property type="entry name" value="PROTEIN DISPATCHED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="49"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="121"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="193"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="134"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="198"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4001059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="29920" checksum="8B6E53867EBE7537" modified="2020-12-02" version="1">MAKKEGISGNEEMQGRKGRIIGSVHVEMKNFGAIASQSNVLSYIQFGQFVMIVMSVSWAYATFVFQAMCCILGPEKNSGQMMVPKHKTRYKRLKACLCCANDDLDHYKMVRKNDSTEVINAKRSSTLLKEEGEPSTSTEQGETSTMAEVYTDKGGPSTSTLADQDEPSTWPGPGGTEDTFVQAIDQVGSCKLFTTHDDSEDSDDDAGDDDSKNDSNDGDLLEPSSQTETEEEPMMVDKTVSSDTEPEDENVTYGKRCANYTCSFYVSQGWVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4M3</accession>
    <name>A0A7D9I4M3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018795</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003115">
        <property type="protein sequence ID" value="CAB3997505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4M3"/>
    <dbReference type="OrthoDB" id="1607513at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15543" checksum="5B38EC03D835F526" modified="2020-12-02" version="1">MLPCLLSASKYVTISVVKPILHRLTTVELACEEYDLPLTCDLKNEILQRLKTRYEKSDLSNMLVVVIFLDARYKADFITTEPTTGTTDEAEDATQVIQSQLHVVKEELLKQAVFLSVLGLESTPSPSPSTEPTKEEVET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I688</accession>
    <name>A0A7D9I688_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NmrA-like family domain-containing protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A039026</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NmrA-type oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003378">
        <property type="protein sequence ID" value="CAB3998522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I688"/>
    <dbReference type="OrthoDB" id="300709at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05251">
        <property type="entry name" value="NmrA_like_SDR_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.25.10">
        <property type="entry name" value="UDP-galactose 4-epimerase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051164">
        <property type="entry name" value="NmrA-like_oxidored"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42748">
        <property type="entry name" value="NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42748:SF7">
        <property type="entry name" value="NMRA LIKE REDOX SENSOR 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA-like" evidence="4">
        <location>
            <begin position="5"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00040296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3998522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="25884" checksum="40ECFEF11C46EBA1" modified="2020-12-02" version="1" fragment="single">MSMHLITVFGATGAQGGGVVRALLAGGKFKVRGITRSVESEKANELVSQGVEMVQANFDKPETLYEAIAGSYGVFLVTNFWDGMDGARETRQGKGVIDVCLQEGVKHLIYSGLESAEKMYGFVVEHFESKARVEDCMMEKAGSMIWNSVRTPGYFSNYLTLVKPKKLDDGSYVFALPMEGKPLYLMDVADLGECVASIFNEPENYGGKIIGVATEFITVEQFCDVLNKVLAPRVFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9I0</accession>
    <name>A0A7D9I9I0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Anaphase-promoting complex subunit 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058912</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005061">
        <property type="protein sequence ID" value="CAB4004966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9I0"/>
    <dbReference type="OrthoDB" id="308440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="28925" checksum="8F4F6164A50B76EB" modified="2020-12-02" version="1" fragment="single">MALLLEQVKKLYDAGLLSNIRITAGMVLSALSQCRTTDPQSMATQCQLLVYYADSIYENQEYKRAEKYYQSALQLKKNLVKKKYRPPSSTPVVSEVDVRYKIYLCQMKLKDYKSAQKTLDDIPPKQRTPQITMCLAKLYHKMGVERPAIACYKDVLRSCPLALEAAMGLLELGQSATEVTSLMTVCLPSIGNLEWLLTWLKAYSLKTTSKFTKAAQQFKTLEAQHLRDNVDILCSLAECHWQSGDSNNAKALYKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICE9</accession>
    <name>A0A7D9ICE9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">omega-amidase</fullName>
            <ecNumber evidence="2">3.5.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Nitrilase homolog 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A053068</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-oxoglutaramate + H2O = 2-oxoglutarate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:32963"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16769"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.1.3"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:32964"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2-oxosuccinamate + H2O = oxaloacetate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:59412"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57735"/>
            <dbReference type="EC" id="3.5.1.3"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:59413"/>
        </physiologicalReaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.3" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020004445">
        <property type="protein sequence ID" value="CAB4002777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICE9"/>
    <dbReference type="OrthoDB" id="10250282at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050152">
        <property type="term" value="F:omega-amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006528">
        <property type="term" value="P:asparagine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006107">
        <property type="term" value="P:oxaloacetate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="entry name" value="Carbon-nitrogen hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23088">
        <property type="entry name" value="NITRILASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23088:SF30">
        <property type="entry name" value="OMEGA-AMIDASE NIT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="Carbon-nitrogen hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00036637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00039118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00041576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4002777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13201" checksum="A17E5CBDAD5405A7" modified="2020-12-02" version="1">MAQLYAKQGCKLLLYPGAFNMTTGPAHWELLIRSRAVNNQVYCAAISPARDTEASYVAWGHTTLANPWGEVVAKCEHQEDIVYADIDLNYLEEVRSQVPITSQRRHDLYSVENTQTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ID57</accession>
    <name>A0A7D9ID57_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Testis-specific serine threonine- kinase 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A083804</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arrestin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004803">
        <property type="protein sequence ID" value="CAB4004080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ID57"/>
    <dbReference type="OrthoDB" id="5984109at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050321">
        <property type="term" value="F:tau-protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000226">
        <property type="term" value="P:microtubule cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000658">
        <property type="entry name" value="Protein CBG12184"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.640">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014752">
        <property type="entry name" value="Arrestin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011021">
        <property type="entry name" value="Arrestin-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011022">
        <property type="entry name" value="Arrestin_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346:SF82">
        <property type="entry name" value="KP78A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346">
        <property type="entry name" value="MAP/MICROTUBULE AFFINITY-REGULATING KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02752">
        <property type="entry name" value="Arrestin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00339">
        <property type="entry name" value="Arrestin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01017">
        <property type="entry name" value="Arrestin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="709"/>
            <end position="730"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="815"/>
            <end position="841"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="944"/>
            <end position="979"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="827"/>
            <end position="841"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="949"/>
            <end position="966"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4004080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1003" mass="113185" checksum="A6C8E19DCD5755AB" modified="2020-12-02" version="1">MEAEAIEYEEDLHQDADAVDVRKIICEDQDRPVFTAGFAITLSCVVYLKKAVGNPQIHLEVKGKVRVQYEGRILDDSSHSTSGLRKSKRRKVREKMIFILPVVLSPAFLEAGEHVVPITFDLPYNLRTSFESPMGSVRYWIQPNTTYHYVATADAFYFDVNGLNCFIQRGIPREKTYAESVRGMFFSKSPVEIICSVEWEGCEIGESVPVTVKVHSSHKKIKYVNIDLCREVSNFLGDPRIMVVSSAKVKLNSVFKTLKSWKGNFVIPDDLRPEAFQIKGFFSVAYHLKFTALTTFSNNFSVSIPIKIGNKLPSMENLAIDKSKWKELEEFYEQTGLKGYTSIMIEECLGRRIVRPATEYIHISPLSPDVSTEKPPITIEEIDCERRGYKLTHKTLGVGAYAKVKLAYVSPNKKAKHPCLRTNLDNKDDNRVAIKIISKKNAPAEYLEKFMPREIDALNATCRHRNVITLYETFRSETKIYLVMEYAAKGDLLEYINSKTRRGQPLTEVKAKFLFRQLVLGITHCHQRNVVHRDLKCENVLLDENDLIKVTDFGFATRYPTSKCQFLDTFCGSYAYAAPEILSACKYDGKLADIWSLGVILFAMTCGKLPYNDKSLKYLIEQTKKKVLFPEKLNLSSELRGLIHGILVYDANSRMSLHEILFHPWLAMTKVPKQAPSCTATRKIYRSENEGENKPTPCVTGTGTVALERRPRPLGVPRPQKKPRRPPVPSPVQFLVATQRENSIRKSAIPSGTWSPLSSTPEPGHVAKIMRDRNNNDVMKLLMTAGPERPATPTRLYKLAPSEQRQKVITAYQAPTSSPVVRPRTGASAQGNQGNKMTSAAQDGGNKYAAMKSGVFLRTFHTLYRCNKAEDEIKEQWNDEAGLDIQQAQPRNVDYGSSDKYNFPPVSGRAGHEENYTHQYHQRASSCRRYSAWKTPITSSKNRKLAILSRSGKNSSSGTRSSRSAGYEASRERGDTSPCCRKTFASVSQPKQLVSKLTVHVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IED2</accession>
    <name>A0A7D9IED2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071542</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004701">
        <property type="protein sequence ID" value="CAB4003701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IED2"/>
    <dbReference type="OrthoDB" id="5987412at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="234" mass="26561" checksum="DD9B703EEB06873E" modified="2020-12-02" version="1" fragment="single">MSASQETCPFCEKEFGSEETVVIGKKGADGINNASDKRGDNIIVAPKTRVHKSCRANYINQNYIDSHKKTNQLECTPSVVKRSARVSVGPYDSSTDCLYCGNKIVKFEFGVKNDDYGCVKTDCFADTILSICKTRADEWAFTIQGRVQYYGGDLHAADCLYHRSCDINFRTLRDIPKQHRVGPSENKRSRKLGRPSDTDQEEAFFRMCAFFEDNDEEQLSITDLANKMEEYLHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IH52</accession>
    <name>A0A7D9IH52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NACHT, LRR and PYD domains-containing 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A035425</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NLRP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005342">
        <property type="protein sequence ID" value="CAB4005883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IH52"/>
    <dbReference type="OrthoDB" id="120976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.80">
        <property type="entry name" value="Gap junction channel protein cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038359">
        <property type="entry name" value="Connexin_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050637">
        <property type="entry name" value="NLRP_innate_immun_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45690">
        <property type="entry name" value="NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45690:SF19">
        <property type="entry name" value="NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13516">
        <property type="entry name" value="LRR_6"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00368">
        <property type="entry name" value="LRR_RI"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50837">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4005883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1197" mass="136367" checksum="6C5357CD2100604C" modified="2020-12-02" version="1">MDSWQPFIPLSSKSYSKYGRIILAVVFVLSAILIGVGYDLNEKANFRCNPNTTIAADLTAKNFVETNCYINYEKKHHRSLPVSSFVVINFGLILVMSVVYAGIANSKVEKFDTKSSENIYESWQLESSRDARIFVFPLYIVHLLLGRVIPLVLFILLIHPANFPVQFQCPWPPETSQLSTATNHNERSRNLTNVECVNPLGDKFETLATSVLCIDCFIATLAIIEVVYLLNWYRHDSDFGSDIEFCCMYLLEKRDLTIQQILKRIRKTIREDECFLNVNFGSDRRLQFRGMHVLGDLKFQFLIHEEIESKRFQRHEIYNVYLEHGDRDLVKNRLVHLFPSENTNPYSTTNSNTATNDKISNPDTLKTYDKILIIGRAGIGKTTVAKAILYRWAKSKLLEDKVVIFLRFRSFRKNKTTILKKMLRQGKGIPSGSNFEELYKFILANPKKIVLIFDGLEDIELDSKSFLQEQDEETTDDDHEEPMSMFTIYIKLLKDKLLPGAKIITTSRRDNAEYICNYFKIQFQRRLELLGFSKHDIKEYAKGFCQSKTDVCAQIWTTIKNNPEFLNLCYIPEVCDLVCLTLKECFDCPKPGRDIASLIPKTITELYQRATRVIIWETQKYKRPFGLFGTTVYLTSKLPSSPENFMKTLKRLAKFKLESSEKSFQLEAEDVSQNIISCGLLTPLPDGYYSFIHITMQEFLAACHIVDEMKDISDVTSFLSSLKDYLEKSNWHLVVQFVAGLLGEKIRTKEIDVPKDSISRSFLQWFRFLTPVKNAKNANENYKRTAILVIKFLNEMQDVQIEELCAKEMDGGGKKECNLSCLNIAPIDCIALFQFLVRIGNLNKLNLMYNQISYLGCLGLAKLIDKNVNLTSLNLTNTSLGDKGIKIICHNLNNRIRRPINLFLNSNKITAKGIKSVCDVIVRRKLNLTNLSFRGNKMTVDGAEAFSTALTHSNCMITELNLGGNELKSAGVNALCQALQHGNCKLLNLNLSNNSIKYEDIKSLCDVLKIGRCRLTTLYLNGNNLTVHEIEPLVDALRNKNCTLKKLDLSNNQLGDAGAESLSHALTDENSCKLVQLVIGNNEINDRGFEILFRALKNGNCQLTELNLYSSKLGDTGVEHLCDAIKDENCKLTTLDLSFNEIRQMGVHHLCDALKHKNCKLTNLQLVGNNMTSQDSQNLGKSKKHRRGLPLIFLEAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IKJ9</accession>
    <name>A0A7D9IKJ9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DnaJ homolog subfamily B member 9</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Endoplasmic reticulum DNA J domain-containing protein 4</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A082867</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Co-chaperone for Hsp70 protein HSPA5/BiP that acts as a key repressor of the ERN1/IRE1-mediated unfolded protein response (UPR). J domain-containing co-chaperones stimulate the ATPase activity of Hsp70 proteins and are required for efficient substrate recognition by Hsp70 proteins. In the unstressed endoplasmic reticulum, interacts with the luminal region of ERN1/IRE1 and selectively recruits HSPA5/BiP: HSPA5/BiP disrupts the dimerization of the active ERN1/IRE1 luminal region, thereby inactivating ERN1/IRE1. Also involved in endoplasmic reticulum-associated degradation (ERAD) of misfolded proteins. Required for survival of B-cell progenitors and normal antibody production.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Interacts with HSPA5/BiP; interaction is direct. Interacts with ERN1/IRE1 (via the luminal region). Interacts with DERL1.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006338">
        <property type="protein sequence ID" value="CAB4009102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IKJ9"/>
    <dbReference type="OrthoDB" id="552049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051787">
        <property type="term" value="F:misfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:protein-folding chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036503">
        <property type="term" value="P:ERAD pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="entry name" value="DnaJ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018253">
        <property type="entry name" value="DnaJ_domain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051948">
        <property type="entry name" value="Hsp70_co-chaperone_J-domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44360">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY B MEMBER 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44360:SF1">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY B MEMBER 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="Chaperone J-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00636">
        <property type="entry name" value="DNAJ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="J" evidence="7">
        <location>
            <begin position="69"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="238"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="249"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00040158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00041533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00045428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00046365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4009102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31906" checksum="6A54314E5A67B8CF" modified="2020-12-02" version="1">MQSHVVKIFQHNIQSSSLLLGYFTCQFYQEYLRYSRIKSLLMQCENFVVIAAVFGAFVTELNLVLAGKDYYKILGVPRDSNGKQIKKAFRKLAIKYHPDKNKEKDAESKFREIAEAYEVLSDEKKRRQYDKFGEDGLKGEGFRTGSFDFDDFFKDFNFGGFGRGNYDNRRGDDNRRGGNGFKFSFGGGFDDFFKMDDDDDDYFEEEDSMFGGGFGDGFGDFGDFGDSFFGHHRNNHGDSMHSRQMYRESPNSGSQKQNCRTVTRKMGNMVTTFTECT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IV76</accession>
    <name>A0A7D9IV76_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Hexosyltransferase</fullName>
            <ecNumber evidence="15">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A032956</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>3-O-(N-acetyl-beta-D-glucosaminyl-(1-&gt;4)-alpha-D-mannosyl)-L-threonyl-[protein] + UDP-N-acetyl-alpha-D-galactosamine = 3-O-[beta-D-GalNAc-(1-&gt;3)-beta-D-GlcNAc-(1-&gt;4)-alpha-D-Man]-L-Thr-[protein] + UDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:37667"/>
            <dbReference type="Rhea" id="RHEA-COMP:13308"/>
            <dbReference type="Rhea" id="RHEA-COMP:13618"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:67138"/>
            <dbReference type="ChEBI" id="CHEBI:136709"/>
            <dbReference type="ChEBI" id="CHEBI:137540"/>
            <dbReference type="EC" id="2.4.1.313"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2 15">Golgi apparatus membrane</location>
            <topology evidence="2 15">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 15">Belongs to the glycosyltransferase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="15"/>
    <dbReference type="EMBL" id="CACRXK020009725">
        <property type="protein sequence ID" value="CAB4017835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IV76"/>
    <dbReference type="OrthoDB" id="2139606at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008194">
        <property type="term" value="F:UDP-glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006493">
        <property type="term" value="P:protein O-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002659">
        <property type="entry name" value="Glyco_trans_31"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214">
        <property type="entry name" value="BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214:SF219">
        <property type="entry name" value="UDP-GALNAC:BETA-1,3-N-ACETYLGALACTOSAMINYLTRANSFERASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01762">
        <property type="entry name" value="Galactosyl_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="13" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5 15" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11 15" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00047667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU363063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB4017835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="37305" checksum="49F3E4894A58C6EC" modified="2020-12-02" version="1" fragment="single">KEIVSVNFTVESPGTQVNGSRFKTVPNYILPKDFQASIVIENSKCISHGCRKCERFTDIQDNGGLFKTLKVRRFSSDVGSFPEIEETTPDEKCVHGTGTFMYLAHDDTQGKSLTKEQRQNRILEWQQLKQEENVRLQEESKTFSDLLFVPNVDVYRNLPSQLLGFYRWIAENVPFSFALKTDDDCFVDLENILQEMEEHKLKNKFKLWWGSFRSDWLIERQGKWAEPDYPGVTYPTFACGAGNVLSADLVHWLAGNADSLKRYQGEDVSMGIWLSAVGPTLYKDQRWSCFEECYPGMFTSPEHDTESLLDMWENFQSCGNPCKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWZ5</accession>
    <name>A0A7D9IWZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ras-related Rab-10-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A008176</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the small GTPase superfamily. Rab family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011087">
        <property type="protein sequence ID" value="CAB4020710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWZ5"/>
    <dbReference type="OrthoDB" id="9989112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001447">
        <property type="entry name" value="Ras-related protein Rab-1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050305">
        <property type="entry name" value="Small_GTPase_Rab"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47980">
        <property type="entry name" value="LD44762P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0636">Prenylation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4020710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11250" checksum="73673BF0797B5D44" modified="2020-12-02" version="1" fragment="single">MAKKSYDYLFKLLLIGDSGVGKTCILFRFSDDAFNTTFISTIGIDFKIKTIELEGKKIKLQIWDTAGQERFHTITTSYYRGAMLIMSAIMCNNNWSTTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IY55</accession>
    <name>A0A7D9IY55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008983">
        <property type="protein sequence ID" value="CAB4016128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IY55"/>
    <dbReference type="OrthoDB" id="5980364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="36253" checksum="B367BA5AEC2DBBAA" modified="2020-12-02" version="1" fragment="single">MAVEKALISAGMDILSSTVGLVAGKVYDHLTNKLKDGDVANEKLRQMIVRDLNDIKSKLDCISLKDLGASYTFLREGVRVLNLALDKWNEDQKASEGPADEATRVMNDTASGILNAALSLPQAIQRLKISSNKRFADAQDRFKKSRERATDAFNNKALSIKDRIMACKLRVAASILESGLEDPEVAITACLLTLEELHGLPEIQEMFAVFLKGGLKSMLKKAERLENIMSVLFINHALYDFASKYSSKSANPFTWPEIELKDRTFHPILNTHEILTKTSSSEEFVQQLKRVVVDWRAYGKYLAVNSRGEIILLDKDKITVIYNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6W4</accession>
    <name>A0A7D9J6W4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Histone-lysine N-methyltransferase 2C-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A056899</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012371">
        <property type="protein sequence ID" value="CAB4023208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6W4"/>
    <dbReference type="OrthoDB" id="308383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45888">
        <property type="entry name" value="HL01030P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45888:SF6">
        <property type="entry name" value="HL01030P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00628">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13771">
        <property type="entry name" value="zf-HC5HC2H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="423"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="429"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="442"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4023208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="533" mass="59931" checksum="439E2AA365193E60" modified="2020-12-02" version="1">MNDNICEQFRDCVCCCLCNNDGRSVFGQGKIIQFARFYEDCYSSGEQRESFGMHNQLFSNDRMLDDHSRSGYPMLKRSASHDSVHASVRNFERAHKRRRTNSWEETGDQLISPPSEDTLSQFGYDKKKTLSEICDARGDLWVHEKCATWTAATANSEEKLSVTNLVGKAIATACTWCKHYGASVCCAVPHCNNVFHLPCAVAAGVYQNVRSLKAYCLDHPQVLQNIAFCSTCNCPGEVGNILFCINCGYQAHGQCVSPSTRVTPAVRLGWECRRCKRCQVCRHLIEVKRSLTCRSCDRGYHLSCIEEGRNPQIDQFAAVWQCKKCRRCQSCGKRIPNAQIPVKGNEDMLCDECQTLKSRGRCPLCNKGFCPPSSATVAVQCDTCKKWLHMTCAEVDQDTYNRVQNDDELIFVCESCNQEELSSTASQANEDEEKPEQDTDTEVNSGDSSVENSDQISIFQELRSKHIAIQEEVTQATTSWSTSEPLQWSRLRLAYSFEYYYTKQQVGAMSKMHSRVSETITSPTLPSSAESSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J9C1</accession>
    <name>A0A7D9J9C1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049622</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013338">
        <property type="protein sequence ID" value="CAB4024976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J9C1"/>
    <dbReference type="OrthoDB" id="5948131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19548" checksum="1638DC1EEF6BE191" modified="2020-12-02" version="1" fragment="single">MIDKWAKAINEGYMNGVVLLDLRKAFDLIDHSILLQKLRMYKCSTNSVNRFSSYLQNRYQSTSVNGKISSKLPMTKGVPQGSILGPLLFIVFINDLPLSIPHGDIDMYADDSTITTSAKTINQLNENLNQAMDEVSNWCNDNKMMPNTDKTKCMLITSWQKRLHIPQNEDLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDE5</accession>
    <name>A0A7D9JDE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A080500</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014784">
        <property type="protein sequence ID" value="CAB4027414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JDE5"/>
    <dbReference type="OrthoDB" id="5987069at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041249">
        <property type="entry name" value="HEPN_DZIP3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039:SF17">
        <property type="entry name" value="FUNGAL STAND N-TERMINAL GOODBYE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18738">
        <property type="entry name" value="HEPN_DZIP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="DZIP3-like HEPN" evidence="4">
        <location>
            <begin position="29"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="5">
        <location>
            <begin position="238"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="659"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="180"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="660"/>
            <end position="669"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="670"/>
            <end position="682"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="692"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4027414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="692" mass="79781" checksum="210843D28DF30DE7" modified="2020-12-02" version="1" fragment="single">MDYITRLSKLLLDKGTKALRVTLDDIHNPAKLPGILNAKKIELLKLKPLVINDTQWDLLFPPTGNPPDSKTFDVTLLSVLLRNICGLPHPKASIWKNMPPDKDRTKVANITRVRVFRNQVAHACPTEIDEAKFENLWQKISESLVDLKIPKQEIDDSKTSPLTTEEEIYVQNLKKIALQEEESKNMLDDLIAKVKRIEQQLSHNERKIDSVEEQRLRKFAKQEFRSLIRRKVQYFHPGTRDWLLKKVESWFTAGDESILLLITAGPGFGKSVFAAKLCDLFEEKNKLAACHFCEFLNSNLGDPVMLLESLASQMCENVPGYKEKLLDQLRRHNETGNLNETFQIYLQNPLDDLKGETRLIVIDGLNERASDDKNKMANLIARKFPCLSKCVKILVTSRPERDLQTLNCIQIVRIEEYKEENNSDLLQYLNDCLPSLAAKDEIDAPKHDHHHSIFLSAIVEKCEGSFQYAFHAQDELGKRKDLDTMTFEEILSFAPKGMDVVYEEYFDCLQAELEAVTNEKPDLLKLLELLVASETPIPLTFVARVLNLVPDSVEMRNIITQVNRAISCLLYVWDDLVTFSHNSIYDWLLGKGYCNLKYTVKISDSYNRLRQLCMQVVREIEDELRWGYEPNITSEVKYVMDFINDYEYLMARKTKIDNPMQPQTSQSVLRQREDVETIKSPEKAPNLSGKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPD2</accession>
    <name>A0A7D9JPD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A011976</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019272">
        <property type="protein sequence ID" value="CAB4033474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPD2"/>
    <dbReference type="OrthoDB" id="6236007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="174"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="203"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="125"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="203"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="239"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="269"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4033474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="307" mass="33908" checksum="C86F3DE7A141CB56" modified="2020-12-02" version="1" fragment="single">LVVAKDECYTNADCYNDFLQLRIVCCKNARDVDRYCQPYNCEGRYCLTHGDCGGEGACCMKNKCTNSQNCPRCNSSSDCAVSEYCCVRAQGNVCRRSCVGERCDENSDCTGPKEYCDSDNVCAKSTSSTTTTKKTPEQKPTQTPEQISKQTPDQIPDQNAPTQKMNSCTSTAPFPPYAIVFIILLAIIVLILGYLLYDRCKTKSRRETQNDVERNRQTRSLPPVPRTQSLGRAPPPTPSNDCHATNGQNISQTRPRTPPPTPDYGGHATNDQNIEQTGSRAQPPPSSSQTHPYAYADCRFINMPPGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K5X9</accession>
    <name>A0A7D9K5X9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028096">
        <property type="protein sequence ID" value="CAB4041294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K5X9"/>
    <dbReference type="OrthoDB" id="269822at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004435">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate phospholipase C activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00275">
        <property type="entry name" value="C2_PLC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001192">
        <property type="entry name" value="PI-PLC_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10336:SF209">
        <property type="entry name" value="PHOSPHOINOSITIDE PHOSPHOLIPASE C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10336">
        <property type="entry name" value="PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2" evidence="1">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15667" checksum="3F94224843DF3DA0" modified="2020-12-02" version="1">MRLDSPKIAKGQKLTVQVISGQQLPKVSGGSRGEIVDPYVTVAVHDVLEEKQLFQTKVINNNGFDPYWNETFQFRVINPEMALVRFAVYDQDVGKDDFIAQFSLPFTSMKQGYRQIALNGRGTKSLFPASLFVHVQIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8B5</accession>
    <name>A0A7D9K8B5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Heme O synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A031989</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029083">
        <property type="protein sequence ID" value="CAB4041882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8B5"/>
    <dbReference type="OrthoDB" id="5211at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008495">
        <property type="term" value="F:protoheme IX farnesyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006784">
        <property type="term" value="P:heme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="entry name" value="UbiA prenyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006369">
        <property type="entry name" value="Protohaem_IX_farnesylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43448">
        <property type="entry name" value="PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43448:SF2">
        <property type="entry name" value="PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00030253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4041882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12183" checksum="AE5559D770FCD917" modified="2020-12-02" version="1" fragment="single">SSHALMFGVAAGASGLTILLTQVNGLTALLGASTLILYTTVYTPLKRLSIANTWVGSVVGALPPLMGWTACTGTLDPGAFILGGILYSWQFPHFNALSWNLRADYSRGRLWVRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KCM3</accession>
    <name>A0A7D9KCM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TNF receptor-associated factor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A089756</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032163">
        <property type="protein sequence ID" value="CAB4043354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KCM3"/>
    <dbReference type="OrthoDB" id="6499288at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049342">
        <property type="entry name" value="TRAF1-6_MATH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21355">
        <property type="entry name" value="TRAF-mep_MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4043354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22869" checksum="42309B672CADB37D" modified="2020-12-02" version="1" fragment="single">VFPDVFTKRELNGLCLHCTNQDCLWYGTYEALEGHSTVCEHALINCIHSQCKMKFQRSHQGEHLKIECEYRNVKCDFCGQDVTFALMKEHIGTSCEGAPLTCKYCKEDVLRKDIENHERRDCDEVPATCEFQAVGCNHDKKKITMMLLDQGNGDHMIDAFHSDSQSSSFQRSKSDMNIASGSPLFMPLDSLNNRQYIKDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L689</accession>
    <name>A0A7D9L689_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Thyrotroph embryonic factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A043061</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014644">
        <property type="protein sequence ID" value="CAB4027177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L689"/>
    <dbReference type="OrthoDB" id="6022300at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14695">
        <property type="entry name" value="bZIP_HLF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004827">
        <property type="entry name" value="bZIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046347">
        <property type="entry name" value="bZIP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040223">
        <property type="entry name" value="PAR_bZIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11988:SF27">
        <property type="entry name" value="GH27708P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11988">
        <property type="entry name" value="THYROTROPH EMBRYONIC FACTOR RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07716">
        <property type="entry name" value="bZIP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00338">
        <property type="entry name" value="BRLZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57959">
        <property type="entry name" value="Leucine zipper domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50217">
        <property type="entry name" value="BZIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="250"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="316"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="18"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="162"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="250"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4027177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="39746" checksum="28E34D4F84E9328B" modified="2020-12-02" version="1">MTAPDSNTPHTVIQGRKGSYYESESAESGYSATEYSNNTGSDEWTNNSKQPSLANTISTNNANFTHILNKHGNTNSEENTGETSYFDMQKNPYFQAGYPDARAYYGWLPAGFSPMRLPALIYPHSFLGFAPTVAWMKNNDNATGRVENIEKIDRWKGKHGASSISSETSQGSQDSTAITDKDKVEYDFETVREKTQSIHSDEDEGLVLDERETLKRRRQKEIEKLQTQTIRPQPERSSVIQENVSVQAKPSVVTHVQDSSTNDEQEQIKSAKRGRASTRQIEKTDQYWDRRKKNNVSAKKSRDARRQREALINQRSAVLETENLRVRAELATLREENTRLKRELNSLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L807</accession>
    <name>A0A7D9L807_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ornithine decarboxylase</fullName>
            <ecNumber evidence="7">4.1.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A062474</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-ornithine + H(+) = putrescine + CO2</text>
            <dbReference type="Rhea" id="RHEA:22964"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:326268"/>
            <dbReference type="EC" id="4.1.1.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Amine and polyamine biosynthesis; putrescine biosynthesis via L-ornithine pathway; putrescine from L-ornithine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer. Only the dimer is catalytically active, as the active sites are constructed of residues from both monomers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Orn/Lys/Arg decarboxylase class-II family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.17" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020014988">
        <property type="protein sequence ID" value="CAB4027735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L807"/>
    <dbReference type="OrthoDB" id="5978053at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004586">
        <property type="term" value="F:ornithine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033387">
        <property type="term" value="P:putrescine biosynthetic process from arginine, via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="entry name" value="Alanine racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022644">
        <property type="entry name" value="De-COase2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022653">
        <property type="entry name" value="De-COase2_pyr-phos_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000183">
        <property type="entry name" value="Orn/DAP/Arg_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002433">
        <property type="entry name" value="Orn_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11482">
        <property type="entry name" value="ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11482:SF6">
        <property type="entry name" value="ORNITHINE DECARBOXYLASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02784">
        <property type="entry name" value="Orn_Arg_deC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01179">
        <property type="entry name" value="ODADCRBXLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01182">
        <property type="entry name" value="ORNDCRBXLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="PLP-binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00878">
        <property type="entry name" value="ODR_DC_2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orn/DAP/Arg decarboxylase 2 N-terminal" evidence="10">
        <location>
            <begin position="44"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00034138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00046672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4027735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="21646" checksum="8520FF6F7A5F1657" modified="2020-12-02" version="1" fragment="single">MKIVANENPKVSVFEDGVSIKEVITTLMQNNKSEDDAFYCVDIGDILKKHEKWKYLLPRIEPFYAIKCNTDPVILELMVNLGIGFDCASQVEIDTMLLSYGVEPNRIIFANPCKQLSHIKYAVANGVDLMAFDNEMELQKVKALAPNSRLLLRILTDDSRSLCQLGIKYGAALDQCQHLLKVAKQLDLNVVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LEY8</accession>
    <name>A0A7D9LEY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086668</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017677">
        <property type="protein sequence ID" value="CAB4031500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LEY8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="18783" checksum="7053D57F4E1EB586" modified="2020-12-02" version="1">MSILFGYDYFDTTTEDLDILKQKLAVVEKGQQGNTAEVVKNSDEIVKLNSLGKNYVQYDFTQTPGYPPGFLQPSNIPDADKGNAKFIRFNVSDGNNTATSSPLYGFYVGSAGTIVLFTRDQSSRIIQVSFTFFVTGDTTNSMVQIFGLESRDVNVTGRTGTTTISCFLMTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHJ0</accession>
    <name>A0A7D9LHJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Leucine-rich repeat-containing 19-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A066511</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018789">
        <property type="protein sequence ID" value="CAB4032895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHJ0"/>
    <dbReference type="OrthoDB" id="5971645at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051432">
        <property type="entry name" value="KCNMA1_auxiliary"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46473">
        <property type="entry name" value="GH08155P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46473:SF10">
        <property type="entry name" value="LD45603P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="12" id="KW-0407">Ion channel</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4032895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11629" checksum="F56C6FAF7283EF0D" modified="2020-12-02" version="1">MNWITKLDADLFSSLNTLRLLSLRKNIITKLEDEIFSGLANLQYLYLDNNELIDIGSSVFGTLFGLKVLISSRAYDCEFSKSMQEYSYLKEKSQGSGGMRLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LWN2</accession>
    <name>A0A7D9LWN2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083568</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027034">
        <property type="protein sequence ID" value="CAB4040612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LWN2"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="642" mass="73071" checksum="4A83070D9971E044" modified="2020-12-02" version="1">MTEAEHDKALHEIFEWFSLIGLTFNKDKCEFSQSQLTFFGFVFSGDGISPDPAKVSAIHNCPPPNSIKAVRSFLGMVTYCAIFIPNFSDLTEPLRKLTRKNVPFCWTSRHAKSFNAVKDALTSATVMAYFDQTKETELITDASLFGLSAILTQKVPGSDQRNVVAYISRSLSDVERRYCQTEREALAIVWAIERLHIYLYGGHFTLITDCKPVELILNNPQSRPPARIERWNLRLQDYDFNVRYTKGLDNPSDFLSRHLPVNNTTDDRQFQTMADNYVCFLTQHAVPRAMTLPEIQQATVANSTLQILSNLITTGKWHLIDSLDVQSNPNPNVKVLDLKACEKIKTELTLNEHDGIILRGSRIVLPESLRLKAVQIAHEGHQGLVKTKQLLREKVWYPGIDKLAKHTVDTCLLCQANGPNSHQEPLRMTMLPPQPWHTMNIDFCGPFLGGSYLLVIIDAYSRFPEVEIVSSTSAKSTILKLEQIFATHGIPKVLKSDNGLPFQSHEFSLYLKELGIKHKPSSPLWPQGNGQAENFMKPLVKAVKSAHHENKDWKREMFKFLLNYRATPHSITGKSPSELLYNRKIQTKLPHVTVENDSSLHQEVKERDERLKKNQKEYADSKRRVKCADIKKSDLVLVRQPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2N9</accession>
    <name>A0A7D9M2N9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032633">
        <property type="protein sequence ID" value="CAB4043560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2N9"/>
    <dbReference type="OrthoDB" id="10473615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="243"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="249"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="304"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="39247" checksum="A45BBB2536F38594" modified="2020-12-02" version="1" fragment="single">MNVEDKKQERSKAKMAVTVAARRLIGAYNRECEYDILKDSMFELEKVFDDFCVINEEYELIVSDEKYAEHRVVNGEVIMTYRDNVKRCYEEARSVFVSVKTTIEQKARQQSAGPVKVALKNDICRIHELITVVDESFKLENVNMAALQLDKNDLQSILNIICDNMAKLGSIETQEQVNLIQEDVDAIIRAVYNCIRKINLFLHEQQAFVKSLHIETATLPSETNIPPENINTVFPPEINTNIPPEDTETINTMSPPGNQHQHPPENTETINTMSPPGNQPQHTPENTETINTMSPPGNQHQHPPETINTNTPPDINTNTPPEDTDTINTMSPPETNTPPETISTTSPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M8M6</accession>
    <name>A0A7D9M8M6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon opus</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031276</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034352">
        <property type="protein sequence ID" value="CAB4044240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M8M6"/>
    <dbReference type="OrthoDB" id="7323790at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="34233" checksum="37C0618216573AA2" modified="2020-12-02" version="1">MDSFHKPSALSFDGNTSENWRRFKQQFQIYLVASGSEDKDDPIKIAILLNFAGEDAIEVFNTFEFSAGDDKKLDKLIEQFERYCNPRKNVVFERYQFWKITQRDSETVDQFVTRLKNKVKSCEYTSVDDMVRDKFVFSIQDLTVKERLLREEKLTLEKAISMARAAEASKGQIKVMNARAQSSEANQSVNVLRYDANQGKGQIGSRREKTKSEKCGFCGMVHALRSCPAFGKTCNYCKKTGHFERVCRAKQRQRDSRLREVNVLGEFEDSEVSEDDLLTFSVESNNEGSSKNDWHGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FI41</accession>
    <name>A0A6S7FI41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A072328</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000181">
        <property type="protein sequence ID" value="CAB3979255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FI41"/>
    <dbReference type="OrthoDB" id="5981889at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="19981" checksum="688C455B67062649" modified="2020-12-02" version="1">MTPETFENLLNIVGPHIRKQTTNYMNPISSQQGLAICFSYRVGASTVGASTCLVNQCMKVPTKNEWQALAESFNNKWNFTNCVGAIDGKHITFQAPPNSGSLYFNYKGTFSMVLMALVDANYCFTVIDIGSYGSNSDGGIFSNSLLGQRLAENQLNLPVPIDLPGASLLGKVNSIWFFCISLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FT25</accession>
    <name>A0A6S7FT25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019119</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000536">
        <property type="protein sequence ID" value="CAB3982738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FT25"/>
    <dbReference type="OrthoDB" id="10589085at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="11977" checksum="8B98E78B260A704A" modified="2020-12-02" version="1">MSESESDQDLNVSQYDVEDDLNAYGSPTYKAQEAAVCRTHVIAKVVANATVENDRDAHAEEHKCADRCSCERRQVEFIGTLTVGEKDKVLLELLSNYGKGTRLDTPNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUJ5</accession>
    <name>A0A6S7FUJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional coactivator YAP1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A046669</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000234">
        <property type="protein sequence ID" value="CAB3979839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUJ5"/>
    <dbReference type="OrthoDB" id="3045089at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035329">
        <property type="term" value="P:hippo signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00201">
        <property type="entry name" value="WW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.70.10:FF:000012">
        <property type="entry name" value="transcriptional coactivator YAP1 isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.70.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001202">
        <property type="entry name" value="WW_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036020">
        <property type="entry name" value="WW_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051583">
        <property type="entry name" value="YAP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17616:SF8">
        <property type="entry name" value="TRANSCRIPTIONAL COACTIVATOR YORKIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17616">
        <property type="entry name" value="YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00397">
        <property type="entry name" value="WW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00456">
        <property type="entry name" value="WW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51045">
        <property type="entry name" value="WW domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01159">
        <property type="entry name" value="WW_DOMAIN_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50020">
        <property type="entry name" value="WW_DOMAIN_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0010">Activator</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3979839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="421" mass="46652" checksum="E27D5F790FE3D980" modified="2020-12-02" version="1">MALKDNKAVVNIQGDSENDLEALFRVIRPNETVGLKKEPVLPMRMRKLPPSFFTPGPGDIEGRQEVKPPPQINPGTGLVIAHSRAHSSPASLTVPKSSKKAVNPMQVLHMRSQSYDASETNTGVVGPLPPGWEAATTSDGQKYFMNHMDQSTTWQDPRKTRSTSNLTANQQQFTDGWQQAITPGRELYYINHMNRSTSWVDPRLSSMNTGQNRTAVPPAQPAHNNGIDKLQLHRLQMEKQMLQRRQQQLLQQEIVIKRGLLTKEDDSSSMLMNLSREAFMGIPNNEPQPQPTLTSRHIREESADSGLGLGTFYPGSDLDVVSGNFDESLHENFGSKENLQQQNNNNNNLRPGQLPDCFDLMPSSNVDVGLMDGTDSVIGMDTDDLGVGLDQINSDFMLSDVEAALGPPNKIDSFLSNLNWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVZ5</accession>
    <name>A0A6S7FVZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Component of the counting factor complex</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the histidine acid phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000474">
        <property type="protein sequence ID" value="CAB3982167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVZ5"/>
    <dbReference type="OrthoDB" id="10257284at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07061">
        <property type="entry name" value="HP_HAP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033379">
        <property type="entry name" value="Acid_Pase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000560">
        <property type="entry name" value="His_Pase_clade-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050645">
        <property type="entry name" value="Histidine_acid_phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11567">
        <property type="entry name" value="ACID PHOSPHATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11567:SF202">
        <property type="entry name" value="LYSOPHOSPHATIDIC ACID PHOSPHATASE TYPE 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00328">
        <property type="entry name" value="His_Phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00778">
        <property type="entry name" value="HIS_ACID_PHOSPHAT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="415" mass="47691" checksum="A76E39D88EF752D0" modified="2020-12-02" version="1">MKLFLVFVSLAITAFSYSVADLPPYCGVDIEEYPKAEGTLRQVHLVTRHGDRIQASAGQCWKGDEHTWDCLLTEATVPTINRDQHYLRVERLYRKVFYTGREEVPGNCALGQLTSVGFKQQLDNGENYRKVYVDSGFLLKNFSSVEHRVRSTDIFRTLQSAQMFMTGLFPPSQPVEGRSGIMDINTMDATYENMYPNSKLCPKSEEYLLAYFKSADFLDHYQSVSVQLVKDLQTALDDDTFAYNGIFQLFDCLNVFKCHEVAIPPGITQELYQRVTDEVTYVFNRMYAYPSMQEAAKVGIGFFVKEMFKEVADMMDNESKLKFILYSGHDTTLMPLQLAFNISDGVWPPYASQMIFEIYQMSDNSFYLRILYNGKVQKMPFCNNKEMCDMDTVEKHLATIEPESVEKNCQTSMKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G207</accession>
    <name>A0A6S7G207_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071399</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000918">
        <property type="protein sequence ID" value="CAB3985765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G207"/>
    <dbReference type="OrthoDB" id="5960386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="177"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="295"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="299"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="40843" checksum="FC189EF7A234A769" modified="2020-12-02" version="1">MNAMETEDVGAISYLDSAERNGIENEYAGNVSTKGCGDCEEMNAGCVDGGEASSVDIGNTGETGIFCPRAKHNCPFPSCKASVVHLPRHMRQVHGWSKVDSTAVLGTFDLRNPRPGPFSAEKKRKHARKVCPVPSCGSIIKRIHNHLAQKHKIKRGRSPRFVKLVKKTEKYEPAVVDCEMTSSHESSVNSSDENQSEDQWKMKNPSSSKVYETVYDSEDSVQYDWILNNIVKGGGKKGGKDVDDRSYDEGKCGGGDCGDGEGKCGSADCDDEDIGGDEYDGGYCGGGEFGGEDNVSGGEKFGGGDSDVNEFGGGVSGDKGSYGGNEKRCTENVGDSVDVEGDNDGGTAAANLLSNVDDKVLLSNFKDWLSSPDGGRKYTKCAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5H9</accession>
    <name>A0A6S7G5H9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Neogenin-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A048846</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001133">
        <property type="protein sequence ID" value="CAB3987198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5H9"/>
    <dbReference type="OrthoDB" id="6021834at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.10:FF:000004">
        <property type="entry name" value="DCC isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.10:FF:000107">
        <property type="entry name" value="Myosin, light chain kinase a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.10:FF:000189">
        <property type="entry name" value="Neogenin isoform 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44170:SF54">
        <property type="entry name" value="FI24025P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44170">
        <property type="entry name" value="PROTEIN SIDEKICK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00014">
        <property type="entry name" value="FNTYPEIII"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="653"/>
            <end position="681"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="662"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="957"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3987198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="957" mass="106773" checksum="5D9A9642BA1A10C2" modified="2020-12-02" version="1" fragment="single">MSTRDFHAHSVLVCIFWKSVKAWDCYGINDTSRASFLEVFMERTSRMKSFIVAFVYITSVPILAKRYIEFNEEPSNLVVMRNKPATLRCNITAKNNLIISWHKDGIKLDLTNDTRRTILSHGSLYFKTIIRQKKLSPDAGVYRCVGETKVNGRSFKILSRKARLTVTGMSKSFVVTPQNLTVSEGETALFECKIKRSRPEAKIKWSKEGKNTDLTLNFRFVVFPSGTLEILSVMQSDAGSYICKATNEEMRRSATAKATLTITSASTTPKPNKFLVKPSNVIVLHNEDAILECIITGYPKPQVEWYKDGTKITLTQNGQYSKYGASSLNVSGAQAADSGKYECVMGTDKAEASLQVLVPPQFKVLPTNIETVEGKNIVFPCEATGSPKPKISWYKNGDMIDAVQFEHIEVNDDGITIMEVLESDEGIYQCFAKNDGGEIEASAQLNIKGPTTTPPTTVATTTLTTMQVTTRAPSIKMLAPSAPKNVKAAAENTTAIRVFWQEPDQPHGKIKKYTVVTHKVPDGGNPEFKSMPETQDTQLVVSNLEPGTLYQFVVYASNEYKKGALSKSVGEYTAKRKTPALEPPRDVQVTAISSMALKISWKPPLNALLVIKNYSIEYRDIDRNTPWRIESSLRHGVVLLKLRPYTKYSVKVTAHTDGGPGQTSSVFSARTKSGKPNGPPEDIKLVATNDILVAKWSPPSDPNGNITGYEIQLKNENSGNVSNFTTKKNNKVFMNVEKSATYALRVAAVTEAGRGDFSQWMRKDMPAPPITEDVVPGKPTNLRTHVVLGMVRVSWDPPKESHIIVRQYVLSYGKMTPDDTFKRLPNTTTSYLLQKLQSGTIYIIRVRAKNAKGQGLEALERITIPPLKQSSGIYNLRAVPIKKRTLKLSWIDPTINLRPNVVYHVKFEKDGTWRQFNVTKRTSLVVKNLRPGMTYTFYAKKNDESKFVTVSNSTREE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8N8</accession>
    <name>A0A6S7G8N8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P2X purinoreceptor 7 intracellular domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062414</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000786">
        <property type="protein sequence ID" value="CAB3984796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8N8"/>
    <dbReference type="OrthoDB" id="5956414at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="88"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3984796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="29062" checksum="1A01912326E08564" modified="2020-12-02" version="1">MSSTDASSEASSFASENEYLSEYDEMSGIEGLEADISEAEQIETLDDVTAEITAADSPVVSSDDDAYAWVDDPVADEEWTEQYEENMRANEVIKDEMLKRLHGTTELNEWCKCGNCSLEFLSNWQECNCCCELDGCQESLSSEIVQQDLGDEDNIVCITQHPGFRPVCLEKWSLRMAAWTYKTKGKQRYKQLAGEERFLRSVAYRKFTRMVYGVIGKTRIPLPACAYHAIRKKFPLTKDESFTGFEIDEDDEIFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBL4</accession>
    <name>A0A6S7GBL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038834</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001322">
        <property type="protein sequence ID" value="CAB3988433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBL4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="42413" checksum="E975B1F4F365B6D0" modified="2020-12-02" version="1">MKRKKQEEAEPIEEHDSGFVGPMTLFDTFPHNDTFAEMRTLELLPNPSTENAEIYTFMHNRQDYGVIDMEDAKLSAKLRLVTSANGNAQAATVNACVNIALLRYGWKTKAVYLNNQLITPQSSKENELEYTHDFLTTVPSEYLDDKQINLMIRDTPGHMDVITNLHHSTNATGNTNIGARQRYNAINRAVIHTCIDKLDLLGRVKRYVPTSFDIKVVLTRLEKTKVIYGTAAECTLLDLRMREECRYYKITHRYVAIPVPQNSRHIQHKDIFNGARPTRLISKIVSQDRYNGSHILSPYHVAFPDIARFAVSINEAEIPPVITNSAEAYVNLRQTLDRRHSEMPCTYNEYVSDYGMMVSHKFYPIQQAEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFF1</accession>
    <name>A0A6S7GFF1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">unspecific monooxygenase</fullName>
            <ecNumber evidence="5">1.14.14.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A085605</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 13">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Endoplasmic reticulum membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Microsome membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 14">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.14.14.1" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020001576">
        <property type="protein sequence ID" value="CAB3989963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFF1"/>
    <dbReference type="OrthoDB" id="1055148at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004508">
        <property type="term" value="F:steroid 17-alpha-monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042446">
        <property type="term" value="P:hormone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042448">
        <property type="term" value="P:progesterone metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289:SF21">
        <property type="entry name" value="CYTOCHROME P450 1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="6 13 14" id="KW-0349">Heme</keyword>
    <keyword evidence="11 13 14" id="KW-0408">Iron</keyword>
    <keyword evidence="15" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 13 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0492">Microsome</keyword>
    <keyword evidence="12 14" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="10 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="13">
        <location>
            <position position="426"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3989963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="529" mass="60097" checksum="98125F4913BCA2D7" modified="2020-12-02" version="1">MNIVSGSLLQLLLQNPSILVLLFATTCILLVMRRVQENTGLPPGPFSWPIIGNLHLLGSAPHERLTELAKTFGDVYRLQLGSRRVIVLNSLDCVKETLVKKSSHFSSRPPLSSLQASDMDGRSVAFGPYGAIHLKNRRLAHLALHSFMLDHEQLSSLTNDCVKRLCKRLAGHNQHFDPAFDVEQSIAELNLKTMFGGQVKENDRDELCLLLKSSSEFIKNNNINNLVDFLPWLSPFLEDSVQLLKGLVQKLVNFVKKIYLEKKKSYIGHVKVRCVADALIRCYESGSNERFVALGEELDLHEDNIVALLTDLHLYKELSNVVGENCISVNDKHRLPFLEATVLEILRYSTVLPLAIPHYAEHETTVGPYRVPQDTIIFVNLWAINHDERVFKEPFKFDPSRFIDENGEVNRARFSSIPFSTGTRKCLGHLLAQLQLFLLLGELVFLLFRSQLALVNVLVTYLLNYSCSYFLVVLYTSIELNYLVVQVCHPNLGLFFDHNLLKLMFTQDNRTCYAAELTRGLCTSWTQRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFX1</accession>
    <name>A0A6S7GFX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002018">
        <property type="protein sequence ID" value="CAB3992304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFX1"/>
    <dbReference type="OrthoDB" id="5954387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19679" checksum="948C1925CFBA9986" modified="2020-12-02" version="1">MEHIILSHVSKHLAYHDILINEQHGFRKLFSCETQLITAINDWAKSINQKKQTDVILLDFSKAFDSVPHLRLMSKLDHYGIRGLSANWIKAFLSNRSQVVSVNGSHSHPQPVISGVPQGTILAPVLFLLYINDISENIKSQIRLFADDGIIYRDINNDQDHVTLQEDLDNLNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLX5</accession>
    <name>A0A6S7GLX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027994</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001726">
        <property type="protein sequence ID" value="CAB3990792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLX5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="39158" checksum="A8114AAB9CA9AA81" modified="2020-12-02" version="1">MCKQPSPKYVDQSSQTVDPNREQCLCVDLLSEFDNMKINFEIILTRVDALQSLANTQTICFNNYNIVHLESVLDGEGSKSTKSEPTISLIEKEKNSEIEVLKSKINSLDMKLEKCLKDYDANSNQSPIVIPQEPIVSLQPPIVPPQAPITPSLHVNKRNQDQTPELQISGHANKVFLNKLPLCDTQGFNCKQANYLNETSLLPQDVMTPYQSLGSNSPLLSNRSRKCLGKIPNGHRHGIYQSKTSNLELSLLPQHVLSPCQSLESNSPLLSNRSRKFLGKIPNGHKHGICQSKTSSLRDFTQPQRKIAPFRKSPANYRPPRIVLEKQSMEWAVYLQFVSQMTHKSTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTY7</accession>
    <name>A0A6S7GTY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032781</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002672">
        <property type="protein sequence ID" value="CAB3995478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTY7"/>
    <dbReference type="OrthoDB" id="10048910at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="22365" checksum="23594CAD316F4785" modified="2020-12-02" version="1" fragment="single">MTAVFRSSKEPVEIAAQMQRGNGNPLGDEFCFIDAEHDKVKGMKTINLSVQHPVLKECVTIASMDCTSESTETLCEFWRQLNNALREYTDDMTYIFDPEGIITDEHGGNRESIRRELKPGMVARSKSCELHFYDCAHKVSKANWSEKSRKKLITMAHGIYTAETPGTYEASYENGSYAGGLEQKRKDVISLRRQLDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWU6</accession>
    <name>A0A6S7GWU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002873">
        <property type="protein sequence ID" value="CAB3996458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWU6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="77" mass="9090" checksum="6D8653C1A52E1692" modified="2020-12-02" version="1">MNTLSHKLHQIFVKHLIICRKSGETERRWTPIILNSANFPSGTSEGLKRENTWEYRREPQVSRPRRHQSAQAILKPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H235</accession>
    <name>A0A6S7H235_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034454</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003659">
        <property type="protein sequence ID" value="CAB3999735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H235"/>
    <dbReference type="OrthoDB" id="5982168at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025048">
        <property type="entry name" value="DUF3987"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13148">
        <property type="entry name" value="DUF3987"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="316"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="318"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="38818" checksum="D536FB9E427BC22A" modified="2020-12-02" version="1">MKRLLQCYDGSHWYESKGNTNKRMGVPSAALALSCFTQPNAFLRLVMPKLVSNSNGLLDRFLVCLPFAKSAPISERIEASKKLKETNLTSLEKLYERIYAKHNNSDNVVYSLEEEALDIYVRHSQNNQSPQDGADGNAKNDKNIIRLAAIIHVFFNILEQALDQRVQEVPINISAQTLTAAIALAGYFEKQRAILKQAAKLGEVETKSSIGPEEIQEAIILHPGPFVTAKLVYRKFSSRIRPDTEAVKNEMSYLEEIGLGKMAQVDRSDFFFKTLPTDVQNDSLSKFGISSEEYKDIFNNVDSALTDRQRLRAEISDPNEQFAQYTASQEEQLPIGLGNDDESAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H5J3</accession>
    <name>A0A6S7H5J3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Craniofacial development 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A018945</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003250">
        <property type="protein sequence ID" value="CAB3998019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H5J3"/>
    <dbReference type="OrthoDB" id="5949761at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.210.20">
        <property type="entry name" value="THAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038441">
        <property type="entry name" value="THAP_Znf_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027805">
        <property type="entry name" value="Transposase_HTH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF133">
        <property type="entry name" value="SI:CH211-262I1.5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13613">
        <property type="entry name" value="HTH_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00692">
        <property type="entry name" value="DM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="127"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="127"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3998019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="35440" checksum="CDD673B5630953C0" modified="2020-12-02" version="1">MADELAAAAGGKIAAKKKKMGHKCCAAANCNFRSDNRPDLSFYEFPKDDYLKKKWEVKMRRGDATFKNIANKFCCSAHFLPSDFKQSLTGHRRVKRGAIPSVFKWAPVTSDPRGERLKLRNEMIAKSKSEQQTEHGPDEQQLAGSSISSYSSGRNMVVFGPRTLEEFINEKKEEAEQLKAELTRAKEKEYIFTFGLERFSGSNEDINFYTGFPDYQTLIEFWKYIEPNSSRLTYYSYLKNSTDVNFNNAFPYLNLTKKKFPGSSVGAQRSLQPIDEFWLFLTRLRVGLLERDLAFRFNISVPTVSDIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H5L5</accession>
    <name>A0A6S7H5L5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073583</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003973">
        <property type="protein sequence ID" value="CAB4000975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H5L5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13975">
        <property type="entry name" value="gag-asp_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="417" mass="46792" checksum="851E91641CE571BF" modified="2020-12-02" version="1" fragment="single">MTEIKQACYDGTGDVDLWLMKMKFYCSTKKFEGKQEAHAIASKLEGAAFLCIARLDDELQDDPKEVKAALRKEFDKESIDHEKAVDELRDLRRKGGETPAQLAWRIEKLMAKAYPEIKSDSKHRDLNLTQLSEELDRLELIYKTTAPKVNLEVNNFKTTGEADEISLRKIIREEVAAALSKENDGSRETEDETKPAKKFITLTGTVVQSGSREFKHEFICDSGAEVSVIPTALAQEHYMKIQPTTRHVEMANGTHAECRGVVQTSVTVGTNNCILSFFVVSGVQNGILGLDSLGKLGVSLNTRKKLATIDGAQPVLQPEVDTPQEILKCCHIRDAESRDIKPFEEIFIWGKLEDKNEKFTRDSYIEESSMGENNPSSQYDPVPEVSVGEQLTTQQRQNLEVLIRKNTQVFDYPGNSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HB77</accession>
    <name>A0A6S7HB77_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ADP-ribosylation factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A087616</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the small GTPase superfamily. Arf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004088">
        <property type="protein sequence ID" value="CAB4001446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HB77"/>
    <dbReference type="OrthoDB" id="2011769at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030010">
        <property type="term" value="P:establishment of cell polarity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00878">
        <property type="entry name" value="Arf_Arl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000412">
        <property type="entry name" value="ADP-ribosylation factor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024156">
        <property type="entry name" value="Small_GTPase_ARF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006689">
        <property type="entry name" value="Small_GTPase_ARF/SAR"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11711">
        <property type="entry name" value="ADP RIBOSYLATION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00025">
        <property type="entry name" value="Arf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00328">
        <property type="entry name" value="SAR1GTPBP"/>
    </dbReference>
    <dbReference type="SMART" id="SM00177">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00178">
        <property type="entry name" value="SAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51417">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="190"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="190"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="201"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="26"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="131"/>
            <end position="134"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4001446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="25567" checksum="92AAEEC64CED5510" modified="2020-12-02" version="1">MGNLLVVSLDRLASAVSSPCHVVMVGLDNSGKTSLMYKAKLKELIKVHPTMAFNVECVNATKKLKYKIWDIGGRESNRPLWKAYVRKTEGVVFVVDSTDSSRFEEARHELFNLLNSESAKLNQVPVLVLANKQDCIGALSPDMLANELNLSALNERHLWHVEPTSAYVGEGFVEGLKTLGRMIAQCRGEHLKDSNEEKTPKPLRRNRSSKKKRSRSRKGSTGSYEGILI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HD31</accession>
    <name>A0A6S7HD31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042139</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002316">
        <property type="protein sequence ID" value="CAB3993721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HD31"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12181" checksum="B863922EDD1E9E54" modified="2020-12-02" version="1">MLGTIKNNKNARNNKNMKNARDNKDSDNGRNNKKRKNGRNDENRKNTRDRKNARDRKNARDRKNARDGKNARDSKNTRNDKNRKNAKDGKNTRDSKNAMASEGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HDT4</accession>
    <name>A0A6S7HDT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065319</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004043">
        <property type="protein sequence ID" value="CAB4001253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HDT4"/>
    <dbReference type="OrthoDB" id="5989324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="464" mass="52783" checksum="50D3591C252B6EE9" modified="2020-12-02" version="1">MWERDRLKRIAVLTNEESAWFNFKNLKNQVNFKIRENKTQYYNSFFNDNLGDCKKTWNGINTILSKNKNLTHTEKVVVDDAVINDPLGVSNAFNRHFTGIGPKLAAKIPVNLNANYDHINKPENEFELLIVSELVVSKLVEKLSTRKANGLDNIPACLLKASAPTTISSLTYIINLVIHTGTVPHDWKRARVTPIHKEDCKMDPNNYRPISVLSVVAKLFEKVIFDQTYEFLCNNNLLSDAQSGFRPLHSTLTALLDITDKWYSNMDNGLINAILFIDLKKAFDTIDHEILLNKLSRYGFKCKTIELFRDYLTGRTQITVVNNIPSDSSDITCGVPQGSILGPLLFLLYINDLPNCNLISDGHLYADDTSLTYADNDINQLLFVMNGDLLSLRNWLNINKLSLNTLKTKCMFIATRHKLATLPSQPTVAIDGNIIERVKKYKCLGLELDECLMLVYSKFYFVME</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEF4</accession>
    <name>A0A6S7HEF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004856">
        <property type="protein sequence ID" value="CAB4004285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEF4"/>
    <dbReference type="OrthoDB" id="8058550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19744" checksum="AA83BB4B648A58B7" modified="2020-12-02" version="1" fragment="single">MDRQEVCFLVLLDLSSAFDTIDHKTIIDVLEYQFGVTDKALEWIKSFFSNRKQRVDIDNNYSEVCDTDICLHLMHGYADDTQLYVSFRPDCDANQKSTLSVMEDCISDVRAWLVSHKLMFKDTKTEFLVIGTPQQLSILEIGAVNVGGVQIKSVDSVRNLGSWFDKHMSISVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HER4</accession>
    <name>A0A6S7HER4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HECT-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="3">2.3.2.26</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A062158</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.26"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.26" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020004443">
        <property type="protein sequence ID" value="CAB4002769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HER4"/>
    <dbReference type="OrthoDB" id="5983847at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2410.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050409">
        <property type="entry name" value="E3_ubiq-protein_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026870">
        <property type="entry name" value="Zinc_ribbon_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11254:SF440">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE NEDD-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11254">
        <property type="entry name" value="HECT DOMAIN UBIQUITIN-PROTEIN LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13240">
        <property type="entry name" value="Zn_Ribbon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00119">
        <property type="entry name" value="HECTc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="HECT" evidence="7">
        <location>
            <begin position="606"/>
            <end position="681"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="31"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="41"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4002769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="681" mass="75820" checksum="1856D1277D58EE61" modified="2020-12-02" version="1">MFCSHCGKSNLTDANYCHKCGSKITGNKVNIPDGETISKRASTSSATGNTSTPPTTFAQFRARKEDDRNKHFKKKDGKRVKLDGKSVESSEVKINIGIMILKDEALIVKRGFTLPLTVPATITYDDLLTKAVEKHHRFNKGVIKHDKTMFYYLLYGDKSKATNLPGCNEPFTLKRYKEEIDKAYTRITLYLCPCSDHIASVWNEFDCNCDTDGSDTSELQSQQPTLAVEPEPTLAIEPEPTLAIEPEPTLAIEPEQPPTTIEYQCPICFLRFPIQQIEEHADNCSEWLAESEEPVELIESSGSDVEELKDPEPDVSQHKKLLKEQIVRCAKDLSTEVKRVTVRRKFIWEDFKNARKSKIQPLSNLKVVFAGEPCIDDGGPKRELFSELLTVMQRTYFTNGYPVLSTMAINSGEFKLCGEIMGMSVMQGGPAPHFLSSPIVAHIVGMPLSTDGNKNHKYKSACESLSTASTDEQVKQLLTSDAILDILDEIGYRGIPQRETLSTVDVIVQAICIKDQLSEFLPALLQIAHGLEGCGLLEVIRRAPIIWKPVFGNGNSFQITADEFLEQLDAEYCDSQIKKDAEIDTFKFFCDAIQNIDGGTANVQLRDFIKWLTGTYTTPPLGFPKRFSIKFVHGCPADCACRPTASTCAISMNIPVHINNESIMNEMIASAVQESHGFGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGJ9</accession>
    <name>A0A6S7HGJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger SWIM domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025483</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002600">
        <property type="protein sequence ID" value="CAB3995110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGJ9"/>
    <dbReference type="OrthoDB" id="5976446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052579">
        <property type="entry name" value="Zinc_finger_SWIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048324">
        <property type="entry name" value="ZSWIM1-3_RNaseH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048325">
        <property type="entry name" value="ZSWIM3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31569">
        <property type="entry name" value="SWIM-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31569:SF4">
        <property type="entry name" value="SWIM-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21056">
        <property type="entry name" value="ZSWIM1-3_RNaseH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21599">
        <property type="entry name" value="ZSWIM3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="842" mass="96829" checksum="B7939CE8D332435D" modified="2020-12-02" version="1">MADDTSLKLGQIFSSFEEVKAAISRYEKKNYVNLYVSDSRTISSTIKRTPSKVIKAELQYSHINYACVAGGRTFKSKSKGTRPNQSTFRKDCNMEVKLRATKDCNFLEVAVLNETHNHECDEQRRLGNETLSKTDKLLKMKCNKKVLQNHLQTISGKVVTCRDISNMKAKLSSSKSNRNDIEKLVKKLRENEGATAEVVVDEENNLLGIYYQDKPMKIAYDSFPEMLFIDATYKLNELKMPLYIMLGEDGNGESEIFCTFIVSNEEKPTIQKMVQIFKNHNPTWTETKTVMTDKDFVERQVFKEEFPNVHLSICLFHSQRSFRREVTTDKMGITPEERNLCLEIFQKMSYAKNEEEYQSLYADLEKASVPSVLEYFKSNWHENHREWVEGLKSANLTFLNRTNNRLESLNQKIKTVCTRNTGLDQFYEELLVVFQSIRTTRDHRAITFLQKRPVCLYAEGTAEARYMTLLHLDTPYAFGYVVQQLQLATKVKNVHRKELGITDDFEVDASSGKLTVSDCHCDCAFFTVMMLPCRHIFAVRSILKKDAFDLSICATRWTVAYYKSKHHVLKSRGHEFSSTPDEMSPICVQQPATKKIMSQHEKYRKTFATCQALATCASEFPMREFHQKNAILEMILAAWRNENVEIQPDKSVPLADVNTTQPQAVCSQIKIPPVMPKRGRPKGADLTVIGIPRKRKEKKSSGKDKPTPFMKKHATDKDKVMLSWLLSKDDVTSALSGGIIDETAVEVRPEKVHPGLIDENVNVSRLRPYFNKDAWLLVNQIIAQVRQDPTWLCNVCKCDVEEDCVSCDSCLNWFHFECVTLKNAPKAKYWFCRKCHSLCKNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHG0</accession>
    <name>A0A6S7HHG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3,5 -cyclic phosphodiesterase pde-5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078032</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004389">
        <property type="protein sequence ID" value="CAB4002570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHG0"/>
    <dbReference type="OrthoDB" id="295473at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004114">
        <property type="term" value="F:3',5'-cyclic-nucleotide phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1300.10">
        <property type="entry name" value="3'5'-cyclic nucleotide phosphodiesterase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023088">
        <property type="entry name" value="PDEase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002073">
        <property type="entry name" value="PDEase_catalytic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036971">
        <property type="entry name" value="PDEase_catalytic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023174">
        <property type="entry name" value="PDEase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11347">
        <property type="entry name" value="CYCLIC NUCLEOTIDE PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00233">
        <property type="entry name" value="PDEase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00387">
        <property type="entry name" value="PDIESTERASE1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00126">
        <property type="entry name" value="PDEASE_I_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51845">
        <property type="entry name" value="PDEASE_I_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="315"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="321"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="41061" checksum="27CE208C6B1EA516" modified="2020-12-02" version="1">MEELDPIPEDLWSFNFNFYQDSDYLLKLAIIMAEQVLETCEISVDTDTLHRFMLTVRKNYRPLAYHSWSHGFSVAHILWLIFTQSPDTFTVNEKLGMFFGAVCHDVDHRGFNNQFLQLIKSPIGLLYQTSTMECHHLDHTLYLLQHDDLNIFKNIEETQHSEIMAVIKQTILDTDITLFTLSHMELEPIVYAGEFDFGNERHRKLFKHELITAADLCAVAKPWNIHRQSVKKVFEEFYTQGDLEKQMGHTPIPLMDRDKKNEVPKSQVTFFSAMGIKCYGILYEILPCTEPLLENARDNLEEWKRLAGISENTEPKNVPMKRFENLMHGRRDSSDEYSESTSQNNMPDVANE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHT8</accession>
    <name>A0A6S7HHT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050913</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004818">
        <property type="protein sequence ID" value="CAB4004146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHT8"/>
    <dbReference type="OrthoDB" id="6779418at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13518" checksum="492DD29F109A8971" modified="2020-12-02" version="1">MDEKSGTVIPPNLVQCNFVHLSADNIDILDETLDGKNTFHATQIAGWQRGAENSSLLDGVNPSKNRSLDIPESMDKIETIVARKSNPVFIKAVKTTWYDQAEDKKECKQAAKATDLKRMDGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLC4</accession>
    <name>A0A6S7HLC4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Aspartyl aminopeptidase</fullName>
            <ecNumber evidence="5">3.4.11.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A000082</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of an N-terminal aspartate or glutamate from a peptide, with a preference for aspartate.</text>
            <dbReference type="EC" id="3.4.11.21"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Tetrahedron-shaped homododecamer built from six homodimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the peptidase M18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.21" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020004960">
        <property type="protein sequence ID" value="CAB4004647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLC4"/>
    <dbReference type="OrthoDB" id="9880441at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.250.10:FF:000001">
        <property type="entry name" value="Aspartyl aminopeptidase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.250.10">
        <property type="entry name" value="Aminopeptidase i, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001948">
        <property type="entry name" value="Peptidase_M18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023358">
        <property type="entry name" value="Peptidase_M18_dom2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28570">
        <property type="entry name" value="ASPARTYL AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28570:SF3">
        <property type="entry name" value="ASPARTYL AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02127">
        <property type="entry name" value="Peptidase_M18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00932">
        <property type="entry name" value="AMINO1PTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101821">
        <property type="entry name" value="Aminopeptidase/glucanase lid domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13 14" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="10 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 13" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="8 13" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 13" id="KW-0862">Zinc</keyword>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4004647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="188" mass="21039" checksum="17B1E8880366DA10" modified="2020-12-02" version="1" fragment="single">HVMTKTIFKQIHQKEHADIPSAGTSKYFVTKNQSSIIAFAVGGKYTPGNGFSIVGAHTDSPCLKVKPNSKVDKHGYMQVGVECYGGGIWNTWFDRDLTVAGRIMIKENGNLTHKLVHIKKPILRVPHLAIHLQRDINDKFSPNLENHTIPVLATQVAEQLQHPSEASTNQKKNEPSQCRVRWILITTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3K1</accession>
    <name>A0A6S7I3K1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SET domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A041997</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007452">
        <property type="protein sequence ID" value="CAB4012286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3K1"/>
    <dbReference type="OrthoDB" id="16287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005700">
        <property type="term" value="C:polytene chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042799">
        <property type="term" value="F:histone H4K20 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043516">
        <property type="term" value="P:regulation of DNA damage response, signal transduction by p53 class mediator"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.270.10">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051760">
        <property type="entry name" value="KMT5A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001214">
        <property type="entry name" value="SET_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046341">
        <property type="entry name" value="SET_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46167">
        <property type="entry name" value="N-LYSINE METHYLTRANSFERASE KMT5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46167:SF1">
        <property type="entry name" value="N-LYSINE METHYLTRANSFERASE KMT5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00856">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82199">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SET" evidence="2">
        <location>
            <begin position="113"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4012286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="19959" checksum="43FF2A1439D370AB" modified="2020-12-02" version="1">MSVYRRRRRQDPNLQEDKAKWFGNGKEDNDQDGFEIRIIPGKAMMPQRNPKMVRSLEDLSTKGQTKLKKFMSKLMRRRRQDPNLQEDKAKWFGNGKEDNDQDGFEIRIIPGKGRAVFATRFFEKGNFLLVYGELITEKEANEREQRDRKNVPIYRYFFRLNSKNFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I512</accession>
    <name>A0A6S7I512_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Centromere I-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A010815</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
            <location evidence="2">Centromere</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CENP-I/CTF3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007356">
        <property type="protein sequence ID" value="CAB4012039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I512"/>
    <dbReference type="OrthoDB" id="6347512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000939">
        <property type="term" value="C:inner kinetochore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034080">
        <property type="term" value="P:CENP-A containing chromatin assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000070">
        <property type="term" value="P:mitotic sister chromatid segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012485">
        <property type="entry name" value="CENP-I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48208">
        <property type="entry name" value="CENTROMERE PROTEIN I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48208:SF2">
        <property type="entry name" value="CENTROMERE PROTEIN I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07778">
        <property type="entry name" value="CENP-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0137">Centromere</keyword>
    <keyword evidence="4" id="KW-0158">Chromosome</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4012039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="41168" checksum="BE9218BB8A0D7059" modified="2020-12-02" version="1">MQNTRVTLDQITSFKDFLKHIDKLQFPNQMGCILESRYLQHLLVVTQNEAAVIRLNFWLQQALYEELVCAPSGVTRERVTKFLEALLNFVSFYQKPLASLESCLAQYLLTWNGVDYQTLIFLLVSQLQIKPFQKLNDLVLEPIRKLFFCSSVEFKCQVLSCLTEMLLTLARSTLVTAMEEDKPSQSTSATPLSVNDLPMSNNETRETCLVIKGLIGFVNRICTVASQMESDHILLQHCILCFFEQVSILHKNYPSVWLFYIPSSAIIYRLLFASNPMAVSRLCNLIVNYKETFESLKRAQLSSAEGDVFDGLENTQEEGIKFNPSLIRGKTRTVYLEFLRRQNLHGVIRFLNTFIKQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5X6</accession>
    <name>A0A6S7I5X6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC109479539</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024243</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004167">
        <property type="protein sequence ID" value="CAB4001742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5X6"/>
    <dbReference type="OrthoDB" id="5986190at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008773">
        <property type="term" value="F:[protein-PII] uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005105">
        <property type="entry name" value="GlnD_Uridyltrans_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19959:SF119">
        <property type="entry name" value="FUNGAL LIPASE-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19959">
        <property type="entry name" value="KINESIN LIGHT CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03445">
        <property type="entry name" value="DUF294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="872" mass="100299" checksum="BDDB92848A439297" modified="2020-12-02" version="1">MDEMVGGNPFHCKFDSELKENELKNLRNEVKKSLEPMECRRSSKNTESLNKCDVRQMLKDETEEIERLSDRISVRMKQFLAALINESLDLLGTPPCDHEVIVLGSLARNEMTPYSDFEWAILTNSEEEECKVFFRNLKNLVYLQIINLGETILPSMNFKAINEEWFYDDITTRGVSFDGFLPQACKTPLGNMPLGKRLEFELIENMPQFELIENMPEFELIENMPAFELIYTPEKMANFQNNDWYRKNWKLGDTLLTFSPLQPDKHILVDAYRREMAKILSCPCDSACCKHDTSCGAWPTRGSCRGLRTLCEDVSRYGDVVIGNNVLDDGKIYDVKKEIYRLTDRVFAALAKCYEVDASGTFAILDELYRREIILSETRDNFASASAIAIKLRISTYLKAGKQGEQLMASSNYETETSAYYMPNSEELFHFFFIAIPLYEELKKLKAAGNIPPSLKQSSFFDDSDATMGHIYCRLLNYDEAFKCYDRTLQQDPENLSIEIRRISIALCITKGTEEMDKIRENLDTLLCKIDQSWSEPHQKITPFVRRMDFQEIQQLLEVLLVASSFFDCPKYSELAGNILSQKSTIRKDSARGGTEWVELVLMEIALQRYLPESSDQQHLIYIVTSKMSSLIDEEGVSIKSIRWLNRLGEILLEMRNLDKAYRCFQRALSMERLLYQTKPNMNTMTSLYFLGTTSFYLSMCRESKFYFESLVQLFESFGRPSARLMDVKKAFLYLALVSQILGNSAEESVCYFEKGIKATTGSRNDAELKLDCLLYCYLADTWHAQHNQEQAWKSALEGKACIRKIVRVQVRAQTTCHLANTLAKIQKTNEGIEILKEEVQELTSQSQMKEKALCLTKLGKLCFEQGLASDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I8E0</accession>
    <name>A0A6S7I8E0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060493</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007820">
        <property type="protein sequence ID" value="CAB4013269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I8E0"/>
    <dbReference type="OrthoDB" id="5987296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="126"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="265" mass="30587" checksum="FAFC17D3663EB629" modified="2020-12-02" version="1" fragment="single">RIRRCRSNDFLIAGFGNIEEEVNVSLEKNERVFFEKCREWNLKLNKSKLKRAQSSVAFMGHLLTSEGLKPDPAKVEAILEMPSPTDVKGVKCFLGMVNYLAKFLPLLSDMTQPLRKLEDKDFEWCWLEQHEKAFKTVKDYLAKTAVLAYYDVTKEVTIQCDASETGLGAVLLQEDQPIAYASRALTETQTRYARIEKELLAIVWATNKFDQYILGREIVHIESDHQPLKAVFAKPIHKSPKRLQRMLMALQNYTLEIHYKKGTLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I8S7</accession>
    <name>A0A6S7I8S7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004479">
        <property type="protein sequence ID" value="CAB4002901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I8S7"/>
    <dbReference type="OrthoDB" id="299997at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46478">
        <property type="entry name" value="VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46478:SF1">
        <property type="entry name" value="VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26336" checksum="72ED2B829380EFC6" modified="2020-12-02" version="1" fragment="single">MPQVTRKPVRVPKTMFAPSRVEIKQSSEEKRPIRAKLRVSSSRESRVNHDKPWENMSLAGALPPLATTVTSINQSHELESTRNVEAAEASGNQTSSDWLVRHSLESEGLTIDHLMKQGILIRPPAGYPDTTPHLKFEAKVIKQFEFKLARLVEECQKRIDWLMEGSRKIFGLLKGQRVAILIDTSDANCGYGRLDLLQQSLQGLINEQLVNKDQLYLLSFGSQVDPIWEAIHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9V8</accession>
    <name>A0A6S7I9V8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051250</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008331">
        <property type="protein sequence ID" value="CAB4014506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9V8"/>
    <dbReference type="OrthoDB" id="10054888at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4014506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="289" mass="31992" checksum="A85D5626AE0BC2C4" modified="2020-12-02" version="1">MSHDSISAAKNVSKENKNTDPAFDQVIDEMSKHTSRLWNSVELQNASTVLHLAGDSEDDTQDLLIGKLAKSIRDEVHQIDHDKSRVTCSYDEILRFKKSAALAATKDIKLSGINHGGLGLIQAVADNFDADISSQNGNMSTHSLAMLITQPSNASDDDLSTRESIQRVKKSEMSEDIDFEIPVLCSAILSERRAKVLDIAFLRDVTNTEACLEYNGYNTRLTRQQGVSMQPKTTAVYLTLIHMTSSDPDTIMTAVHEAKRLSKKRGQKNTIFTSDQQLYRVVSAMGISK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IAW5</accession>
    <name>A0A6S7IAW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A072601</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008149">
        <property type="protein sequence ID" value="CAB4014093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IAW5"/>
    <dbReference type="OrthoDB" id="6102375at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051941">
        <property type="entry name" value="BG_Antigen-Binding_Lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713:SF6">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713">
        <property type="entry name" value="FTP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="381"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="262"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="381"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="436" mass="48982" checksum="E492827FD4524F6E" modified="2020-12-02" version="1" fragment="single">SPTLGTKQKIWCDVHTDGGGFALVGMKDSPVSWTVPSNSTPVDPQGPPHWSSDLGDVKVMDFRVQFSTDKGFEGTKADWFYRLNSQRDFGDIFSVNKGCPDLQAGIGNIEFVKDLSTQSVLTNNFKCSKFGPHTHHMLGWGKMNYCLRNPCKNGYAILDVINLQYDNFGAYSYSAVSSFSGMNHNSTAFVGCDHGKCCACFGPKGIAHKGSCSGKRKSFLNEGTLTVSDKESFDKIPDVPGLLSYRKDDKQLYVNQGSKWQALSTEQEFEQTKKQIQSQEKKIQSLENEANIQEMKLQNQEKNILNQKNKTNIQEKKIRNQDNIIQIQGKKIQGQVNKINIQENKLQSQEKKIQSQGKRIRKLEKENQDWHLIINLAQNKPASQSATTHNAPARRAVDGNKNPNFGEYSCTHTPLTNSPWWRVDLQNGVGYSVVTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IET1</accession>
    <name>A0A6S7IET1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004234">
        <property type="protein sequence ID" value="CAB4002018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IET1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="8"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="167"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="334" mass="37878" checksum="F251245A69CF7216" modified="2020-12-02" version="1">MDTEGDGSESLPSSSSNPSESGKRKSYIASKGRTRIYLYEQFIPWTELKGELNFATEKQLADFLMKAYLSGQESAVKWVMFSTPVRMNEDVTATKTHDEHSRRQLLSESTISELSRHDEKTLTALEHPEVEDSDADDRLDLDKMEQTRSSLHDDEKTLTALEHPEAEDSDTDDSLDLDEIEQTKSALINDVMDKTFPEEEVFDMLLGEDDEFEDPELSLIEDNPQHADFPNTPKDSIPVPNVLPLKLSEMEKCIVFTDKILELLQKIHGSHCNRPGCCKTWEFKKPYVGSCLVVTWKCSSGHFGGSWSSQPMFNKMRAGNLLLYPAFSCLEIHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INL4</accession>
    <name>A0A6S7INL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A039730</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Cu(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29036"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the polysaccharide monooxygenase AA13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010079">
        <property type="protein sequence ID" value="CAB4018599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INL4"/>
    <dbReference type="OrthoDB" id="64893at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004302">
        <property type="entry name" value="Cellulose/chitin-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052282">
        <property type="entry name" value="Starch-active_LPMO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36575">
        <property type="entry name" value="BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36575:SF2">
        <property type="entry name" value="CHITIN-BINDING TYPE-4 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03067">
        <property type="entry name" value="LPMO_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0186">Copper</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034311"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4018599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22295" checksum="06D19AFD042A0D59" modified="2020-12-02" version="1">MKTAFMLAIFSTTLLALVHGHGYIIDPPGRASRWRKGFPGPPNYDDNGLNCGGWSQQWEVHGGKCGVCGDEYGIANPKFVHPGVWANNPPIVKTYQAGQIITVKVKITAAHKGYFTFRVAPLTSVPITQLQLDQHVLMLPTGEDRWVLGDRPAAEYTMNLRLPTGLRCAHCVMQWWYTTANNWQGERPESFVNCADIKIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQH7</accession>
    <name>A0A6S7IQH7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052557</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005959">
        <property type="protein sequence ID" value="CAB4007922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQH7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12191" checksum="F4C14B841B3669DF" modified="2020-12-02" version="1" fragment="single">RCIKQPSRCCRCWQVYEGKIANILWHCIEYIQNELTLKCCDNSGNYKRTCTVKVDSEHIKRSGTHFSTSRLRLFKIDPAFNSLIVVFEVCWRAPHSNSRLSPPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQV8</accession>
    <name>A0A6S7IQV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A051450</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010775">
        <property type="protein sequence ID" value="CAB4020086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQV8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:001228">
        <property type="entry name" value="Zinc finger protein 236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="10">
        <location>
            <begin position="138"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="148"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4020086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17958" checksum="4A95FD98CC4EA3F4" modified="2020-12-02" version="1">MNDVTLIKSLPERVLRLHVATTKVNDQTCLGDTIKPAVITALAHFWRSCMTFTMKIAIGVPHVEQNVYTEWESILDSLSASELERLENDAILECALPDDPFESFTNEDWQRVDASVRQNTGYRCDKCDKVYKHSSNLSRHKRTHGHNKRENSGKLKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYM0</accession>
    <name>A0A6S7IYM0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070664</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012178">
        <property type="protein sequence ID" value="CAB4022823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYM0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="26824" checksum="A4E579F6A2449995" modified="2020-12-02" version="1" fragment="single">CRKVESLGKSMSCGKGEYAVKYYTTGFGGCGTRKTSAGQDGKRGCRGFAGKMFGNVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSGFAGKVSGKVPYTPWSRGKNVAICCKKIGRDNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J145</accession>
    <name>A0A6S7J145_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007060">
        <property type="protein sequence ID" value="CAB4011182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J145"/>
    <dbReference type="OrthoDB" id="418309at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="541" mass="60876" checksum="8BF5606FD593F87B" modified="2020-12-02" version="1">MEEGVPRSSIPTHTIIVDLIPNASGPCSSSIIRHGTFLRQKLSVKVTETKRTSAGNPADIAALFNNYFTSIFTTDPNIENYSSDALPYQSNNTIIEDITLSEADVFSVLHNLDINKAQGPDGIPARLLKETARQIAPSLTALFNKSLNTGVLPRDWKLANVVPVHKKDNKEHVENYRPISLLSLISKALERCVFNKIKDHVFEQINNGQHGFVPRKSCVTQLIEVFEYIGRELDLGKQVDVIYLDMSKAFDRVSHMQLLKRLRDFGFGGNILNWFRSYLKDRRQQTTVLGATSSALPVTSGVPQGSILGPLLFLLYQNNLPNSINHSKIATFADDTKIYKVINAKADASAMENDLANFQTSSANANLLLNTDKCKTLRITRKRNKIDHTYKLQDSALKTTDCERDLGVWTSSTLTWSKQVLHQCAQANKSLGSDILPHPQNSSQRTRSTNPNCLQFQTSACKTSTYQKSYLIRTTRVWNTLPMDLTINSMATLKDFKNKLLIYYKTALDKCYDVDDPRTWKSVCLKCNQARDLTRPIKCCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3B7</accession>
    <name>A0A6S7J3B7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Succinyl- ligase [ADP-forming] subunit beta, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A026075</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014151">
        <property type="protein sequence ID" value="CAB4026356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3B7"/>
    <dbReference type="OrthoDB" id="1552at2759"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042709">
        <property type="term" value="C:succinate-CoA ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006104">
        <property type="term" value="P:succinyl-CoA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.20:FF:000002">
        <property type="entry name" value="Succinate--CoA ligase [ADP-forming] subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.20:FF:000040">
        <property type="entry name" value="Succinate--CoA ligase [ADP-forming] subunit beta mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013650">
        <property type="entry name" value="ATP-grasp_succ-CoA_synth-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815:SF1">
        <property type="entry name" value="SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT BETA, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815">
        <property type="entry name" value="SUCCINYL-COA SYNTHETASE BETA CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08442">
        <property type="entry name" value="ATP-grasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="ATP-grasp fold succinyl-CoA synthetase-type" evidence="10">
        <location>
            <begin position="5"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4026356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20069" checksum="10662725C79CC323" modified="2020-12-02" version="1" fragment="single">MYITVGADDLVLKAQVLAGGRGKGVFEGGLHGGVRIVFSPEECKEYAARMIGKKLFTKQTGEKGRLCNKVLICERLYSRREYYFAITMERSFMGPVLVGSHQGGVDIEKVAAEHPDAIFKEPVDINKGLGLEQATKFARTMGFSESCVPSAADTIMKLYQIFIERDALLIEINPMAEDSLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCR0</accession>
    <name>A0A6S7JCR0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA polymerase delta catalytic subunit</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A064345</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9 13">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020015518">
        <property type="protein sequence ID" value="CAB4028498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCR0"/>
    <dbReference type="OrthoDB" id="2414538at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043625">
        <property type="term" value="C:delta DNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008296">
        <property type="term" value="F:3'-5'-DNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006287">
        <property type="term" value="P:base-excision repair, gap-filling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045004">
        <property type="term" value="P:DNA replication proofreading"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006297">
        <property type="term" value="P:nucleotide-excision repair, DNA gap filling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05777">
        <property type="entry name" value="DNA_polB_delta_exo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000004">
        <property type="entry name" value="DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006172">
        <property type="entry name" value="DNA-dir_DNA_pol_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006133">
        <property type="entry name" value="DNA-dir_DNA_pol_B_exonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050240">
        <property type="entry name" value="DNA_pol_type-B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10322">
        <property type="entry name" value="DNA POLYMERASE CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10322:SF23">
        <property type="entry name" value="DNA POLYMERASE DELTA CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03104">
        <property type="entry name" value="DNA_pol_B_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00486">
        <property type="entry name" value="POLBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B exonuclease" evidence="10">
        <location>
            <begin position="1"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4028498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="35683" checksum="8687A39A1341FD66" modified="2020-12-02" version="1" fragment="single">MVDTAVVGCNWIELPAGKYIIRNDNVKTSRCQLEVDIAWDQFISHPCEGEWQKIAPIRILSFDIECAGRKGIFPEPEKDRVIQISNMVIRQGEKDPFIRNVFTLNTCASIIGSEVKSYKNEKDLLQEWSNFVKEADPDVITGYNIVNFDLPYVLNRAIALKVLKFPFIGRIKEDKSTVSTTTFQSRAYGKRENKVINITGRVQFDLLHILLRDYKLRSYTLNSVSYHFLQEQKEDVPHSIIADLQNGNEQTRRRLAVYCLKDALLPLRLLEKLMCVINYMEMSRVTGVPFSYLLARGQQIKVISQLMRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJ18</accession>
    <name>A0A6S7JJ18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073638</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009216">
        <property type="protein sequence ID" value="CAB4016682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJ18"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1050" mass="120741" checksum="61A0936DFE867261" modified="2020-12-02" version="1">MLLTCVVCSFCDEDFVALGRHSWRCKQRINQAERDPPDATTRQVPVMQSPNVPVSSRTVVKCCCGKICKGARGLKMHQRSCQVIHGLNDELCADLEEQITTDNSENISENEHNGNDINTVNYDSFPELKKGINLPKNYSEWSTANDYFKCALQPSDPITLQDLNSKIKLLNDAIYSYFANNYGHTETVPDKNMVAKYKEYTVKELKKALQNLKSKKGELSEIKYVSRTLRDRLRNNGNDADDLNDSESFNHNKYLERSFWGYVKNIINRKNAVLPSFNMTDYLSYFSKSLAKINPNKLFVIPSWIPKLSDPAVQFNLDLPTYQQITNVIRKMKSSGSPCPLDQLSIISFKHCPYLRTYLTELIHDIWLSGTVPTEWKRACTILIHKKGNNNDPSNFRPITLESIPLKVFTSCLRNAVYSFLASNNFVEHNIQKGFTPNLSGTLEHTAQMADIINKARIRQRSVVITLLDLKNAFGEIHHNLIQSVLDYHHIPDHINFQTSIITSEFRTPFMTVGRGVLQGDCLSPLLFNMCFNTFIQHIKAEKYRQFGFSFKLLNPIHWFQFADDAAVITGQESENQHLLNRFSIWCQWSDMIIRVDKCSTFGIKKAITKSVQYLPKLLISNQLIPKITIGESFQYLGRYFDFHMSNDNHKTELTTLLNELMSDIDSKPLHPKNKLLLYSRYVLSKLAWHFTVATLSKTWVTENIDSIANKYIRRWLEVPISGTLSTVFLTNNKFGLSIYPPSVKFIQCQTVLRKALKSSPNESTNDLWRATSNHTNIQYDAYNSTKEVLKDFRSGHENKLLNQLTSQGSFFCSVTKFALPQLSKVWSVAQSKLPKNIYNFTIRYINNSLPTRKNLNRWAISSNSDCSFCLSPETLLHIVAGCQFYLDRFTWRHNSVLNFLAHQLQTVDGSTLYADLNGFKSPSILTGDTYRPDLLLSCSNGSLYVVELTTGYETNLKNNVKRKKDKYRELLRQLGKNFNQVKFINLSISSLGIFAEECYTFLDMLDSIGLDKNHQMYCVRKMMTIAIRTTYYIFCCRNKEWENPDLLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLA9</accession>
    <name>A0A6S7JLA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017899">
        <property type="protein sequence ID" value="CAB4031788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLA9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13129" checksum="214F118EB54B5755" modified="2020-12-02" version="1">MGGNALLKSGIYFNKTRLKNGTIFFKYIAEEIVEELDLKIVEDDEMKEEVEDEFEEDDEGEGEEGVEDEGAGMEGFTKSTEQTKTSYNEWVAPHGTLPFEQLIRILIFRGGLEALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLQ9</accession>
    <name>A0A6S7JLQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Myoferlin-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A021365</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017906">
        <property type="protein sequence ID" value="CAB4031801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLQ9"/>
    <dbReference type="OrthoDB" id="10059618at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061025">
        <property type="term" value="P:membrane fusion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007009">
        <property type="term" value="P:plasma membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037721">
        <property type="entry name" value="Ferlin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12546">
        <property type="entry name" value="FER-1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12546:SF33">
        <property type="entry name" value="SPERM VESICLE FUSION PROTEIN FER-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="50"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="68"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4031801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="21171" checksum="5E5466D2F63DE186" modified="2020-12-02" version="1" fragment="single">LLGKAKLFLESLVESKENKIHVDVNLTDGYGNPTEYKFSCDLEYTCPTSNGTEADNDKENGQEDAETDSTKEGWDSKRSEEIKKQRFSLPDKPLDFQIRIKVVEARQLEGNDINPVVRVTIGNKRRQTRVRQSTNRPYYNQTLFYSFSAITPNELFGKEIKFEVFNSRLLRSDSLIGVFKVSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRH2</accession>
    <name>A0A6S7JRH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045135</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010186">
        <property type="protein sequence ID" value="CAB4018831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRH2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="143"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="195"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="195"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="214" mass="24138" checksum="6B9ED84DE39ACD56" modified="2020-12-02" version="1">MATVIPVQSTWGLITIGLGYLIFGSMLTALFFFLDFMDADKDVDYSHDHAQYWLGFPAIILGIIVLFGGGQISNKSKIIRVCLSIYCFITSIVSIVLEAPDWMRYLSDNRSPDQICKLAMIAVPGLQREMQYSEYSCKRRTSYAWSVGFITVSAVLLINYSVCSILLHVWLAIKDQMAYKMPDYPAYTVKENNKTAKTKNEKTDGSANMGFEEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JS68</accession>
    <name>A0A6S7JS68_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Huntingtin-interacting 1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A074527</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010279">
        <property type="protein sequence ID" value="CAB4019061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JS68"/>
    <dbReference type="OrthoDB" id="8178130at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030136">
        <property type="term" value="C:clathrin-coated vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030864">
        <property type="term" value="C:cortical actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035615">
        <property type="term" value="F:clathrin adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032051">
        <property type="term" value="F:clathrin light chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043325">
        <property type="term" value="F:phosphatidylinositol-3,4-bisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080025">
        <property type="term" value="F:phosphatidylinositol-3,5-bisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007015">
        <property type="term" value="P:actin filament organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048268">
        <property type="term" value="P:clathrin coat assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006897">
        <property type="term" value="P:endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011417">
        <property type="entry name" value="ANTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013809">
        <property type="entry name" value="ENTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008942">
        <property type="entry name" value="ENTH_VHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030224">
        <property type="entry name" value="Sla2_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10407">
        <property type="entry name" value="HUNTINGTIN INTERACTING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10407:SF15">
        <property type="entry name" value="HUNTINGTIN INTERACTING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07651">
        <property type="entry name" value="ANTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48464">
        <property type="entry name" value="ENTH/VHS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50942">
        <property type="entry name" value="ENTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENTH" evidence="2">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="210"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="41240" checksum="3192121C024E4223" modified="2020-12-02" version="1" fragment="single">MSWKAMTVTYKLLREGHPKVLKESAAQKVTFADLSNYWKHSPEGSYGKLSHLYIIVIMKKLDFHAKYEYIPGTIQPNKSEAIKYPTRDPNYFFELAIDIFDQLDACLDLFDAVSKSLNPYKSNSQIQAVQCRICPFPMLIQECSAFYNLSVEIMYRLHRKLTHDMLTGHRNRFYPMFRRLQKFFFDAGALSYVMALISVPKLPHEPPTFVGAEPKPVEAPKPVKRVEEEPPPRPVKQTDLLGMNSAPHEDQRDKLIEQLTAQIKRLEEMLFNEERKSKEMEDALRLRISELRAELLELRETADQMAKENNDLQSRLQEEMKLAEQGKPAEEKFNKIKQMYSKLRTEHVQLLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSJ7</accession>
    <name>A0A6S7JSJ7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Leucine zipper transcription factor-like protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A050056</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Regulates ciliary localization of the BBSome complex. Together with the BBSome complex, controls SMO ciliary trafficking and contributes to the sonic hedgehog (SHH) pathway regulation. May play a role in neurite outgrowth. May have tumor suppressor function.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Self-associates. Interacts with BBS9; the interaction mediates the association of LZTL1 with the BBsome complex and regulates BBSome ciliary trafficking.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LZTFL1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018952">
        <property type="protein sequence ID" value="CAB4033104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSJ7"/>
    <dbReference type="OrthoDB" id="313412at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903565">
        <property type="term" value="P:negative regulation of protein localization to cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026157">
        <property type="entry name" value="LZTFL1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21635">
        <property type="entry name" value="LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21635:SF0">
        <property type="entry name" value="LEUCINE ZIPPER TRANSCRIPTION FACTOR-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15294">
        <property type="entry name" value="Leu_zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00026004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4033104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="32930" checksum="C285AB1F7911087A" modified="2020-12-02" version="1" fragment="single">SDIGINDHHQETIINYLRFARYNRGQCLRSVDACFEEYKDSHVVEDTYTLEEVLEMLESLQSVVRGEVESELINTAHTNVLLLRQVFSQAEKWYLNLQADISELENRELIEEIAKFEEREFSAKKSVSQTSASSKLAQKTKLVPLSDGSGSALLQMKITHVTRKKLAATCDFENIDKEVKSAIIQNCLSKRLRRYALLDSEVTLAKILAKGRAFELSESQVQISVNTSPINMVIDTGASIDIIDELAFNTLQKQRPIALQRSKTQLAQTPRRIPFHMRQKVSDALDTLEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JW91</accession>
    <name>A0A6S7JW91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085169</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020975">
        <property type="protein sequence ID" value="CAB4035361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JW91"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12401" checksum="D1BC158D3E9C2A19" modified="2020-12-02" version="1">MADLLLQKELSSDERFRLLVTNVPVEMAGEKPPANLSKVGITLSTRRRLTSTGSNEAYSSSQARSMPRACITFPVNRVDANRLLVDKIIPTFRRVCWRKKFRPFPQEHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0E0</accession>
    <name>A0A6S7K0E0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085663</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020743">
        <property type="protein sequence ID" value="CAB4035130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0E0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9823" checksum="DAD41BE7EE6A06C1" modified="2020-12-02" version="1">MDSNKCKGNSLIHGISINNKGKFIWKDSFEELKKVVEEFLPTTNGEWGCPGGDVKQYKSVDLDLRWHPSTRSITLNGKLKESIDAKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1A5</accession>
    <name>A0A6S7K1A5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011605">
        <property type="protein sequence ID" value="CAB4021761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1A5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="6575" checksum="B52F612C09FBE828" modified="2020-12-02" version="1" fragment="single">IDPDKMSFHRGHHTITIFPKGEPGRKFVVSTGVEDNKIVKLYDYLCSIKIGEGVSFEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K600</accession>
    <name>A0A6S7K600_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Translation initiation factor IF-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A014861</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012372">
        <property type="protein sequence ID" value="CAB4023211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K600"/>
    <dbReference type="OrthoDB" id="6374441at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="530"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="539"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="562"/>
            <end position="571"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="597"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="620"/>
            <end position="630"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4023211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="630" mass="70890" checksum="D0554D40D16ACD15" modified="2020-12-02" version="1">MINQNQHAWQQFDKSKPTCLATDWSKNGIGFWSFQKHCTCDSTDTFCCPTGWKVTLVGSHLTHAAESRYAPIEEALAVADALDKTRFFVLGCTDLTIAVDHKPLLKVFGDRSFEDIPNGRLRNLKAKTLRYRFKMVHVPGVKHRAADALSRHPTGPTNPERMLLPDDVAATTDSEATFPFNDLGYFFLAGIRSQDPPRNYNPDDQLASSALAALSTMAITWDRVKLATTSDHDMTQLITLIESGFPQLRHELPSNLQEYYPFRDHLHTIDGMQYLVIVDRYSNWPIIERAQDGAKGLINCLRRLFATFGILDECATDGGPEFTAASTCQFFKDWGVNHRLSSVAFPHSNCRAEIGVKTVKRIITNNTDTRGSLDTDSLQRAILQYRNTPDPSTNLSPAQCVFGRPIKDFIPILSGRYIPHPTWRDTLSAREQALRNRHMQASKRWSEHTKRLPPLKVGDHVRIQNQTGPHPTRWDKTGIIMEVRQFDQYVVRVDGSGRVTMCNRKFLRQYVPVGILPPRHTIMDDLRHVTTPSADTPTLPNPQPMLPEQPQPNHNGEKPRNLPNPIPPPSIPTDVNPLPITAPNVVPITLGTPPPTADQQATDNQVPSRNKKSPLALRRLLGHNRKGLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7C1</accession>
    <name>A0A6S7K7C1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006797</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028112">
        <property type="protein sequence ID" value="CAB4041305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7C1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17655" checksum="D77EFFC2ABF43D82" modified="2020-12-02" version="1" fragment="single">MTNIADSVFETATAEISPVKTCEIITDNNPAVTESTPLKYLSWSYNTFTNDMKGVKADITVMQKQITSINNVINSTNAIIESISKVLDSTENRQISYDTRMETLLKEFSIILDEKNRAINERDITIKQLQANLSEIENERNSLNLKNLPTKHVDNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMV2</accession>
    <name>A0A6S7KMV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032353">
        <property type="protein sequence ID" value="CAB4043431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMV2"/>
    <dbReference type="OrthoDB" id="6022146at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="12084" checksum="6249D38A5B71AC97" modified="2020-12-02" version="1" fragment="single">ELKKFISKECGLDISSSTIRRIRREKLGWKYENTRYCQFVREPNKVKRLSFCLDALARKDTFEDVIFTDERTVQIEQYARVSFRKDGTQAKRKGRPKHPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KNE1</accession>
    <name>A0A6S7KNE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018971</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032634">
        <property type="protein sequence ID" value="CAB4043561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KNE1"/>
    <dbReference type="OrthoDB" id="5958745at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00186">
        <property type="entry name" value="FBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14305" checksum="7B7BC30F5AA31808" modified="2020-12-02" version="1" fragment="single">PQQSCASFYGSGEREDGVYTIDPDGFGTFKVWCDMQDGGGWTVFQRRQDGSVDFYRGWSDYKVGFGNLTGEFWLGLDKIHRLTKSTTQSFLRIDMWDFNVTHAHAKYKNFCVASESDGYKTKHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KU29</accession>
    <name>A0A6S7KU29_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A010297</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040698">
        <property type="protein sequence ID" value="CAB4045630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KU29"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF31">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 6-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="297"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4045630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="39796" checksum="B1A5FBFE28272814" modified="2020-12-02" version="1" fragment="single">EGRVPHAEDKVPHTECKVPHTEDKVPHAEDKVSHAEDKVTDGEDKVPHAEDKVPNAEGKFPHADDKVPHGEDKVPHTEDKVRHTEDKVRHAGDKVPHTEHKVPQTEDKVPHPEDKVPHTEDKVPHGEDKVPQAEDKVPHTEDKVPHAEDKVPHAEDKVPLTEHKVPQTEDKVPNPEDKVPHPQDKVRHAEDKVPHAEDKAAHAEDMVAHAEDKVPHAEDKIPHAEDKVPHREDKVPPTEDKVPHAENKVPQNEDKVPHTKDKVHHTEDKVPLSEDKVPHAEDKVSHDENEVPNAEYKVPHAEDKASHAEDKVPHAEDKFSHAEDKARLTKDKVPQAEDKVPHPEDKDLQAENK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LA00</accession>
    <name>A0A6S7LA00_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Anoctamin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A003028</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the anoctamin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020236">
        <property type="protein sequence ID" value="CAB4034582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LA00"/>
    <dbReference type="OrthoDB" id="296386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005254">
        <property type="term" value="F:chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007632">
        <property type="entry name" value="Anoctamin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049452">
        <property type="entry name" value="Anoctamin_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12308">
        <property type="entry name" value="ANOCTAMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12308:SF73">
        <property type="entry name" value="ANOCTAMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04547">
        <property type="entry name" value="Anoctamin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="272"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="333"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="domain" description="Anoctamin transmembrane" evidence="7">
        <location>
            <begin position="264"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU280814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4034582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="415" mass="47442" checksum="AA440A75510D9A60" modified="2020-12-02" version="1" fragment="single">KGSITGAVFLDLSKAFDTSQQSTVVHSTNDSVLFCSAKTTIELEQKLNSDLQNLSRCPLNRVGSFKYLVNQRLDIIRRVKHLLTVESRRTLVNSLVMPIFDYADFVWVSSASESLRSLNWQPLTSLSNHAQGSFPATTLETNRTYIWNAAPLKITFHGTHSCAALRSRFAYIVRTHTDREDGQKSLSIRTDRLAYMLMHGVYSDALCIHTPSKMDPTHPDSSDEECVGNASFLSSLSDVKEDDPRKNLNDTWLKWKKFQPLWKIRNYFGEQIALYFAWLGLLVSSLWIPMVIGLTVALWGFTNAIEESKNGNDTLSVGETVQGWLRDSFDNDATPFFALIICLWGTIFLELWKRKTAELAYQWDVSDFEEQEPNRPQFYGTEIQKDPITGRDVWVYPLVKKYKKRFGSLSVLLFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTI2</accession>
    <name>A0A6S7LTI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034680</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030566">
        <property type="protein sequence ID" value="CAB4042659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTI2"/>
    <dbReference type="OrthoDB" id="7302968at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="174"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="31915" checksum="446A6E3006374E99" modified="2020-12-02" version="1" fragment="single">LEDKGKVTWVSSLTHDTTVLHGGDPQPITSSTPQFNLSDIRQAQLKDNVIGKVYSFVNRKQRPTSSQRAEESPDTKLLLHDWPKLFIEKDGVLRRQNNSHDQIVLPRPYHRTVLRELHDNMAYLGSERVLPLARDRFYWPRMQSDVEHYVRNICRCVKQRPPRLKTRAPLQPVITTTPFELVSIDFVHLEKSSGGYEYILVIVDHFTRYALAYPTRNKAAKTVAENCTTTTSFALGSQPKSIMIKVENSRTNCSKPWKNFAALVIVVPHLITLKEADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DID1</accession>
    <name>A0A7D9DID1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008961</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000995">
        <property type="protein sequence ID" value="CAB3986293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DID1"/>
    <dbReference type="OrthoDB" id="5982130at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="22441" checksum="BD460058CC7A667F" modified="2020-12-02" version="1">MDVDFAGPLTYKLTKKEEGKCYILIFTCATSRAVHLELTNTKSAEEFEVKLNAFIARKSRPKLIVSDNGGACKATALWIRKICKIERLQDYLARQEVWWRFSLSMSPWWGGMYEHLHKDIKKALYKVLERSTLFLDQLQAIVINIEKNVNNRPLTYVESEQEEKQVLTPNNFCGDKMCIPLLTNQTRMMENKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKK0</accession>
    <name>A0A7D9DKK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074784</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001238">
        <property type="protein sequence ID" value="CAB3987810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKK0"/>
    <dbReference type="OrthoDB" id="6343797at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="386" mass="44134" checksum="EEF617519517DD20" modified="2020-12-02" version="1">MSSAEDTFIYDSGIEMSHDEMEALADALPTMSKSSQATNYAELGESKDSFGNEYRVILKCSKYDGLKICKMKKPNHLLISHRPKTTISRIQNPSTATPTTSNECWSECFDKFYINKNDWKKIANIICDFCCDAYSVLNSSSPAGIDVIPPTPLPTTPVEQKQLEPAKKQKYNNTKSGEAKKKKTKVLQMDEEATSEVRVQFNTPQELCCATKIMLAFMCKYKKGCEETIAQFGNVMNEQFPYPYKDFLVMLKKASNDFELIKKAARLLKGETLTKEQKNLYTLHAKKIHRIKRLKIRVYNKNEQWSIDLADLNELSGYNNQYRYILVCVDVAMRYTFVKMLKTKSGKNVCAKFEEIIHENGPPKKIQADEVTEFNDIKKTGTKIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLL6</accession>
    <name>A0A7D9DLL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001359">
        <property type="protein sequence ID" value="CAB3988653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DLL6"/>
    <dbReference type="OrthoDB" id="6083831at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="424" mass="47140" checksum="29C9E6998B32954C" modified="2020-12-02" version="1">MSDDSQSIAPQPEREGTPDSSPPPLRSERFYSKESSTTITDDLIELSRKAFSTALSREKWLELVQSYSTINDTDSFLIAPKVEAVVLPTNLGISPFVAATPVEVSISTHDNQPNEDGHLLTDNWKTITQDNLVLQTVVGYKIPFTSAPRKWRPRITTTRSSIQQKRMETAIQTLLKKAAIKAVQPAESQFISSLFLVEKVQWKGEIRPIINLKPLNRFVEEWSFKMEEGFRVPMPPIRVEISPSTLHQANDSSHSPYPEFGNTNCHLPGRHSHLTSGSQCSVIYLQEGCEPSRGSGIPHQPEQMFSVPISAAYLLGNNTQHCHNVPVFADREAGSHPTGSTPATYQRQEYTTGVSSTPGTHEPCSSEWHLVGFSALQSTSEGSLSWDPKSSQDVNDISMQHHYSRHSTKVHSGRGLLPFKLKAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DMX1</accession>
    <name>A0A7D9DMX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nephrocystin-3, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023011</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001345">
        <property type="protein sequence ID" value="CAB3988572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DMX1"/>
    <dbReference type="OrthoDB" id="5989885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691:SF3">
        <property type="entry name" value="HTH-TYPE TRANSCRIPTIONAL REGULATOR RV0890C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691">
        <property type="entry name" value="REGULATOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="23"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="863" mass="96692" checksum="03B4DF765220B185" modified="2020-12-02" version="1">MVPYFIGRQQKVEEISRALTSTSARLVSVSGPPGFGKTSLAIAVGHQLRQLGLPVYFLSLRSIKTAEELISNLFNTFAHTSSDLTGRERSKLCGLLSAIPSNICIILDNADDLFESSGETSQHVLDLLEKIFSHCKNVSFLLTTRISLQSVLGRKFAGHTCVGVASLGRKSAQMIVRELVPPADESECCRVAMVCGDVPLAIKLLCGQIVDEKKSISQFLDNFSHFSKKLPDLLDDPDAPNDQRLKVLFESYFKRLSREEQEGFVCLSVFVSEVFDEQAAVNVIGGDEDTAKKTLVRLKRKSLVEANSSEAGLFSFHPLIRSFGSEKAADDMKEIAREAQRRFQSYYVKLFEDLNNQFLAGNSLLAFHDFEFNNENMVHSLSEGLQNEGVCHAIFDVLSDADLFLDTIFYFEHAQIFQEIYKLAIAKAKEQRKFKAVHQLLIAKAFSQITWYDGATLPLLKEAEEIEKQNLLLPSEVARGKRMCYHGIHLLSHKATAKGEEMIETGISLLSSENTVLKVLCSQILVLITRHAQKSSYHRNIVLTECANRPSLYDFFKAIQEDDCADENENENSKTLSQPLILPLALLINNTAECYDMKKVMYKLGLPVSKLLKEVEAEARNDHLSLPLLFIVENTLARTKVKQESPATLQLALDNFIQENGRLNPDAAARYYNIGLILDTQKNYDAALTCHYEALDIRLKLCGLNHADTARSYIEIGHSQLMKKDYESALESFEQALDIGQNLHGKIHPDVSSACNQIGATKCCLKEYDSALHWHQQALDIKVALYGKEHASSANSYSWIANCQCEMQDYDSALESCQHALDIRIKLFGQENEATSDSYDQLEFIRSLKKVCESSLELQSKIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DUP1</accession>
    <name>A0A7D9DUP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MAM and LDL-receptor class A domain-containing 1-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A024225</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002199">
        <property type="protein sequence ID" value="CAB3993158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DUP1"/>
    <dbReference type="OrthoDB" id="6380398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06263">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd13840">
        <property type="entry name" value="SMBP_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00190">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.10:FF:000120">
        <property type="entry name" value="Putative serine protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051560">
        <property type="entry name" value="MAM_domain-containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031877">
        <property type="entry name" value="SmbP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033116">
        <property type="entry name" value="TRYPSIN_SER"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23282">
        <property type="entry name" value="APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23282:SF142">
        <property type="entry name" value="MAM DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00629">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00137">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50060">
        <property type="entry name" value="MAM_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00135">
        <property type="entry name" value="TRYPSIN_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="927"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3993158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="927" mass="102339" checksum="FCED75EFBF1545A6" modified="2020-12-02" version="1" fragment="single">DYVPHTEDKIPHSEEKTRHAEDKVPHAEDKVPHAEEKVPQTKDKVPHTENKVPHTENKVPHGEDKASHADDKVPHAENKVLHAEDKVSHAEDKVPHTEEKVRHTVEKVPHAEDKVPLTEDKVPHTEEKVPHAEDKVPHGEDKVPHTYDKVTQAEDKVPHAEVKVPHSEDKARHAEDKVPHGQEGSSRTRVRRMKGPKIFFMIFTTTEKPGQNSKLICTPCCDELFCLIHFDNEGSYGSSLHWLNKMQGVKTFLTPSPVTSQLKGRQIPAWLEVSVLVYTFDLRIFILFSGQSRMSKKGQRYKTPVLYVEFRSVHKKHDRVENSVNSSLTKGLNQANCTFDKGNICSYQNGAGQFNWMVNGSRTPSGGTGPSSDVSGRGFYLYIETSTPRQFGDKATILTPNLNGSQCMTFSYHMNGKDIGVLNIYANNQRIFSKSGNQGNEWVGVKTSILQRGSYMVKFEGVRGRDYQGDIAIDAISFTPGSCSSQTPTPPPPTTQAGCGKAKLFLDKVVSGQTARPNSWPWQVSLRNVGSSNHFCGGSLISDQWVVTAAHCVLGRSASSLNVRLGEHNFNLNEGNEMDSRVVQIIVHPRYLDDNFNYDIALVKLSRRVPFTPQIQPVCLPQQGVIVDEVSGQGCYITGWGRTGASKPGATVLQQARLPVISESKCREHMGSQVTRQMICAGFGGNSTVSGCFGDSGGPFVCRDKSSNRWILQGAVSWGTRTCSAGHNEFTVFARVAEFAIWIKQQIGNVQPLPPLPHPSSVNCSFDNGNICSYQNGPGQFKWTVKRGSTPSSGTGPSSDVSGRGYYLFIETSSPRQFGDNATILIPYLNGPQCMTFSYHMHGSDIGVLNIYANNQTIFSKSGNQGNRWVGVRTQIIQSGRYMVKIEGIRGRRWQGDIAIDVISFTPGVCSTQAGIFLVALPSFQGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DYH3</accession>
    <name>A0A7D9DYH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059178</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003098">
        <property type="protein sequence ID" value="CAB3997441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DYH3"/>
    <dbReference type="OrthoDB" id="5977287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="284" mass="32601" checksum="153027679501D2A9" modified="2020-12-02" version="1">MNEIWTVIMSTYNQGGDISVILAQYARESQTRERHVSFLLKMYQEEIQKLKSDVPKNTLSNKQKNTIKEEMKVLEKICDANIRGSSEDDPSTNITALLFKDILEAVQLRCPLIHDMLESIIISNPISRNILKTNTHKMICGLQILGFMSNIRNSKTRNCFPMIFGLLCISYGAGKQFVDMLQSMGLSLHWNTIMSFLDKRLTEFQSLIDKCAPTSKPVILLMDNVNMYHGNRRHHRLFKVLGPNMWNFTVRGLLVPNLTEIEHLFQCEESAEKAQCSEPEKLMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E4Q0</accession>
    <name>A0A7D9E4Q0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084811</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003996">
        <property type="protein sequence ID" value="CAB4001077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E4Q0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13308" checksum="898227B10D71875D" modified="2020-12-02" version="1">MAASYDMGWQKRGKGHNSSTGHGAAMGLATHPRVLIKRSASPLAFGQHGVIRRCWRPRCSANFLNSRLVNGGPLSLFKTSGIPCLEKIASNFGITALADVEVKISTSGKRLYSSITTMIYSPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E833</accession>
    <name>A0A7D9E833_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067851</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004755">
        <property type="protein sequence ID" value="CAB4003887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E833"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10431" checksum="395E398EA046AC2B" modified="2020-12-02" version="1" fragment="single">MAGRSCISNLIDTLDYVGSCLDSGGHIDMIYMDMSKAFDKVDHDVLIRKLQKDYGFGGNLLRWFRCYLENRKQRVTVLGATSDLLPVTSGVPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJL4</accession>
    <name>A0A7D9EJL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006242">
        <property type="protein sequence ID" value="CAB4008830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJL4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14448" checksum="1E0358A147AD4676" modified="2020-12-02" version="1">METDEMFLLDDSSQGNLQDSNIAQHNTINLETITDCTVDNVIFEEETTLALFKRIIHRFRNMMSAETVRNFKKLNQLKKSSALRQGLQAKPRKSKKVRWSCNNSKYDKRPISKLCYTLFAKGTGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELJ1</accession>
    <name>A0A7D9ELJ1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">sn-1-specific diacylglycerol lipase</fullName>
            <ecNumber evidence="14">3.1.1.116</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A060426</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>a 1,2-diacyl-sn-glycerol + H2O = a 2-acylglycerol + a fatty acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:33275"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17389"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:28868"/>
            <dbReference type="EC" id="3.1.1.116"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="13">
            <dbReference type="Rhea" id="RHEA:33276"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.116" evidence="14"/>
    <dbReference type="EMBL" id="CACRXK020007055">
        <property type="protein sequence ID" value="CAB4011176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELJ1"/>
    <dbReference type="OrthoDB" id="438440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016298">
        <property type="term" value="F:lipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019369">
        <property type="term" value="P:arachidonate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046340">
        <property type="term" value="P:diacylglycerol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00519">
        <property type="entry name" value="Lipase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052214">
        <property type="entry name" value="DAG_Lipase-Related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002921">
        <property type="entry name" value="Fungal_lipase-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45792">
        <property type="entry name" value="DIACYLGLYCEROL LIPASE HOMOLOG-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45792:SF8">
        <property type="entry name" value="DIACYLGLYCEROL LIPASE-ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01764">
        <property type="entry name" value="Lipase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0106">Calcium</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Fungal lipase-type" evidence="15">
        <location>
            <begin position="365"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00024531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00026104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF01764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB4011176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="634" mass="70870" checksum="7D60B9D9503507B0" modified="2020-12-02" version="1">MPSLTLFGRAWRFGSDDFTFPGVAGVLLRGSWLIILSVIFGISYGDIPDCNEGKLAKVYFWMMIPLLLIEFITEIIITAISMRGCVMDTAQRSSITKFIYMRLVMFVPEIGLTLAGSVWIFNPGSDCDTDIVWSIRVLIGFQWAVLIIVLIFVAILFNPMGKVDSEGKTLFHSTTAFQQAIESQLENTCCCPGASAGNQRQAFSDIARGLAAVFSDVDLVPSDIAAGLILLNREQSRKAQEEREGSRQWVKDRLVAVDDTDTWGKFDESYYFYYFALGSYGWPLYCYMHPCCGLCQLCKVCKCGCAQMFRGIVVEGDECCKANTSGLISQLPSKDDVEQVFTSFKNDVYQTAFCVCIDHNYKKVVVSVRGTLSLKDVLTDLTAETDDLELVCDKGCEEKCFGHRGMAKSARFIMTKLEQENILGSIFLRYPDYSLVIVGHSLGAGTGAVLALLMKERYENLKCFAYSPPQVLNLKAAKYCEDFVTSVIVGNDVISRLSIHSVDILKKEIVDALQHCQMPKYQILLGGCWRILCECFCDCSNDAGETSHLLGRDDNFVYNVNVDTNEVPTPDTDQFEKLYCPGRILHLIERKSTFDLIHGDRDAFEKIAIVPNMISSHVPDNVKKAFDVVQSQIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EN52</accession>
    <name>A0A7D9EN52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007295">
        <property type="protein sequence ID" value="CAB4011871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EN52"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="166"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="192"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="217"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="243"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="268"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="294"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="319"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="345"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="394"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="44469" checksum="C42D5B856DD3185A" modified="2020-12-02" version="1" fragment="single">DNPSRLESSGKKPKVPDKPHGDISHDKNQAGSDHNRAEQTKFTTIPSGNFDKINPEYIFVKSNDSGGGDNALAAFTTDMQHSTHDIHSDTYAQVDNSSHQTRKKPPPIAPKPYPKSKDNVDAPHGGKTDMQHSTHDIHSDTYAQVDNSSHQTRKKPPPIAPKPYPKSKDNVDAPHGGKTDMQHSTHDIHSDTYAQVDNSSHQTRKKPPPIAPKPYPKSKDNVDAPHGGKTDMQHSTHDIHSDTYAQVDNSSHQTRKKPPPIAPKPYPKSKDNVDAPHGGKTDMQHSTHDIHSDTYAQVDNSSHQTRKKPPPIAPKPYPKSKDNVDAPHGGKTDMQHSTHDIHSDTYAQVDNSSHQTRKKPPPIAPKPYSKSKDNVDAPHGGKKKLPPIPKPYGAHKDDEPSQPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENU0</accession>
    <name>A0A7D9ENU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PREDICTED: uncharacterized protein LOC107356592</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A082412</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007586">
        <property type="protein sequence ID" value="CAB4012644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENU0"/>
    <dbReference type="OrthoDB" id="5953963at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2410.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="HECT" evidence="3">
        <location>
            <begin position="255"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="126"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4012644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="372" mass="42447" checksum="C9B99151E2BAF4AD" modified="2020-12-02" version="1">MPFQDENNIPEVECIECGALVPMSYLKKHISEKHGVEINPVKRQHTLDWSSLQSDSNDKEHVDINECDENLPVPVFMSDTSRYHCWKRSMLQTEEINAALSRASGDVNAAAESLLGVEDDEDVEIVESSPTSSSEISDPKAAIAKFRKLEDNPPPPSLNDIPDIELRKCISELESSPNDKTLPEDLKSQLEPYLLDAGLDPHNQDRKFPVQGLMLYNVINKRHLEIEDICKGVEELKLITYLSKWPVLGDLIFPREHERHINLTEFQEKSRFEDNEENKLTEEFFYKYLDLIHQRKGAGLMELCSFWTGINKLASSTNHESMLVKFDASIDLPIVETCFNSMTIPSKFDNFEDFAKMMDIAIKYGSKGFTSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EXA8</accession>
    <name>A0A7D9EXA8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Kinase suppressor of Ras 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A018376</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011029">
        <property type="protein sequence ID" value="CAB4020575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EXA8"/>
    <dbReference type="OrthoDB" id="774951at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000034">
        <property type="entry name" value="Kinase suppressor of Ras 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051681">
        <property type="entry name" value="Ser/Thr_Kinases-Pseudokinases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329:SF253">
        <property type="entry name" value="KINASE SUPPRESSOR OF RAS 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000654">
        <property type="entry name" value="Integrin-linked_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4020575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="35289" checksum="E6A06339EC0D1259" modified="2020-12-02" version="1" fragment="single">SHLSEWTVNFNDIELGDWIGGGRIGDVYKGNWHGQVAVKLIEIKEPTVIQLQAFKMQVQTFRKTRHENLVLFMGACMEPPKLAIITSLCKDHHLYRRIHGLKETLPVNKVMLILKQIAQAMSYLHSRGVVHADLKTKNIFFENESKVVITDFGHFRLAAELKLEETRSGVVKFPYGWVYYLAPEIIRSLSPNQKLHRKLFTKESDVYAFGTVSYELFATVWPFHECSLESIIYQVGKGAKQSLSKLDVAREMKDLINHFWSYHPGKRSDFKLISKILEKIPMTKGRLYRSPSQPVSHMLRAVEADF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F0C1</accession>
    <name>A0A7D9F0C1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nucleoporin NUP35</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">35 kDa nucleoporin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Nucleoporin NUP53</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A011147</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nuclear pore complex</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nup35 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011153">
        <property type="protein sequence ID" value="CAB4020849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F0C1"/>
    <dbReference type="OrthoDB" id="79252at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044613">
        <property type="term" value="C:nuclear pore central transport channel"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044615">
        <property type="term" value="C:nuclear pore nuclear basket"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005543">
        <property type="term" value="F:phospholipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017056">
        <property type="term" value="F:structural constituent of nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051028">
        <property type="term" value="P:mRNA transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006607">
        <property type="term" value="P:NLS-bearing protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006999">
        <property type="term" value="P:nuclear pore organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd15546">
        <property type="entry name" value="PHD_PHF13_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000095">
        <property type="entry name" value="Putative Nucleoporin NUP53"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007846">
        <property type="entry name" value="RRM_NUP35_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21527">
        <property type="entry name" value="NUCLEOPORIN NUP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21527:SF6">
        <property type="entry name" value="NUCLEOPORIN NUP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20826">
        <property type="entry name" value="PHD_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05172">
        <property type="entry name" value="RRM_Nup35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51472">
        <property type="entry name" value="RRM_NUP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0509">mRNA transport</keyword>
    <keyword evidence="11" id="KW-0906">Nuclear pore complex</keyword>
    <keyword evidence="12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0811">Translocation</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="6" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="177"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="15">
        <location>
            <begin position="184"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00030250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB4020849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33410" checksum="BBA78B2ACD452ECE" modified="2020-12-02" version="1" fragment="single">FPPSASSFLLQQFSQYGSILKHEVASSGNWMHIKYQSKLQAKKALSKNGKIFGNNMMVGVKQCIDKSFMFETGKENLPTSATTSLSVSSDVAVPSPSRKTPIRPLTAAYQAASSDIEVSGTMDDRNFANTLPQLHVEVGTICPEENVPEPKKQRRSLEEFNSFCSYVLAYEARLQEERRRRQSPKSSGEESTSSSTDSAYSESISSPDSSDERLLDNVDEEYDSGDESWNKVTCFCEKPFAGRPMIECSECLIWIHLSCAKIRKSNVPEVFVCQKCRDARHTMRRSQRVKTTPSPKRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAQ1</accession>
    <name>A0A7D9HAQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000078">
        <property type="protein sequence ID" value="CAB3977890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAQ1"/>
    <dbReference type="OrthoDB" id="6109579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="21058" checksum="690345EC1258B73A" modified="2020-12-02" version="1">MLFKIRKVKVNLSISVAHEITLKKGPAIYPVCRVECKSFIVPAGNPSLRKDNLFNGLVPKTLVFGLVESEVFNSALKKNPYNFQYFNVSAIGITVNGEKMPFKPLQLSCGAAPKYIEAFSTLFSGTGKCTTTQEMIYPEFRKGYAVYAFYPTLDMCGASPHFNVVQKGNLAIDIQFCIAPANAVSSYVMKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HBM0</accession>
    <name>A0A7D9HBM0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053622</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000207">
        <property type="protein sequence ID" value="CAB3979545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HBM0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13245" checksum="BA21C0B5C7D5D123" modified="2020-12-02" version="1">MSVCNSRITALEAHSSETVSQSGSHFCVDAEHEDATIVLNWKIWLLRHQIWPPDSTIKSPEMTHESPDMDILATETDPKLVDPANEHHNSHLYNPDDLAIAWSPSETFTSFLKKNFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HLX1</accession>
    <name>A0A7D9HLX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cyclin-dependent kinase 14-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A030960</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000782">
        <property type="protein sequence ID" value="CAB3984768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HLX1"/>
    <dbReference type="OrthoDB" id="1732493at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030332">
        <property type="term" value="F:cyclin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004693">
        <property type="term" value="F:cyclin-dependent protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000611">
        <property type="entry name" value="CMGC family protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050108">
        <property type="entry name" value="CDK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24056">
        <property type="entry name" value="CELL DIVISION PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24056:SF189">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="121"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="10"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3984768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="464" mass="52918" checksum="04245790D768852E" modified="2020-12-02" version="1">MAMSPTHSGKAAEDEITVFEKDTNEHGINETASVRKRSDSKIKKLRRRLSEGLRLSLPIALGKEQTFQDDHIDSVFPHVEPPSQTAPVKKTAVRRVHSDITSLQTPQPDFLPVRTRERLRRTYSENPDDGQPRPRSVSFTSPPESPFGKMINYHKLELLGEGSYASVFKGISNITKQTVALKEIRLQPEEGAPFTAIREASLLQELKHANVVKLHDIVHTKDTLMFVFEYLHTDLSHYLEKYPSGLHPHNAKLFLLQLLRGLNYCHDKRILHRDIKPQNLLLSENGELKLADFGLAREKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFGEMLSGRALFQGQKGPSDQLNKIWQLLGTPTKDSWPEVVNYPEYSKGNQTAFYPRRICTIIPVFQHDLVGEDLLKRFLRYEPKRRISAEDSLKHPFFQDLPRALFCLPGRLSVFSLPGVELVRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HR93</accession>
    <name>A0A7D9HR93_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004751</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001754">
        <property type="protein sequence ID" value="CAB3990920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HR93"/>
    <dbReference type="OrthoDB" id="5986507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="50"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19832" checksum="D59D5F40E53E796F" modified="2020-12-02" version="1">MIEDDLNLNLTHTSASQDSSNLECIFQTKTSHLKIMHLNTQSMVSTFNEFLLTVNSYPLDIIALSETWLKDNPQLMEYVPIPGHATEFRHREDIKGGGVGVYIKEDIKYKRHLDIEKLHPELEHLWLEVPGRNIHSKALVGVMYRSILVGVMYRSIRMLSTAKWLESLELVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTS3</accession>
    <name>A0A7D9HTS3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A055231</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001915">
        <property type="protein sequence ID" value="CAB3991777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTS3"/>
    <dbReference type="OrthoDB" id="10394756at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF46">
        <property type="entry name" value="INTELECTIN-1A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57414">
        <property type="entry name" value="Hairpin loop containing domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3991777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="342" mass="38566" checksum="C45066D63E23FC48" modified="2020-12-02" version="1">MYYCIMTVCSSIALLVILVNAICHAEACDRTESGVIFRDALKGRRLKNNLLRTVTTLSVVECSLECLRESCCQSVNFGKDFNIMMEHDCELNEAKASTSPGDITRNDSYIYYEIMDTGNGVRAETCGKGLGSSKDFPGKSCKDIKEHTNTTITKEYWIKPIPTAKPFLAYCEMELHEGGWTLVYRYTFTNYTHFYISNNSVNLRPNWPAPKANVDISTVPPCKDTFGAIQFHLWQYIGREFFVRSNINDWYICKPNAGSLVGKTNGTISCQHVRNIVGNCAETILPDEIVWEGSGPVLKGFRSIYRFDGSTTKWFPTHNSCKASIKNHKKGVPNPYGQIFIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HV04</accession>
    <name>A0A7D9HV04_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Meiotic recombination DMC1 LIM15 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A024055</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RecA family. DMC1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002444">
        <property type="protein sequence ID" value="CAB3994358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HV04"/>
    <dbReference type="OrthoDB" id="10251254at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000794">
        <property type="term" value="C:condensed nuclear chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070192">
        <property type="term" value="P:chromosome organization involved in meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000730">
        <property type="term" value="P:DNA recombinase assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042148">
        <property type="term" value="P:DNA strand invasion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006312">
        <property type="term" value="P:mitotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007131">
        <property type="term" value="P:reciprocal meiotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19514">
        <property type="entry name" value="DMC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000239">
        <property type="entry name" value="Meiotic recombination protein DMC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011940">
        <property type="entry name" value="Dmc1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016467">
        <property type="entry name" value="DNA_recomb/repair_RecA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010995">
        <property type="entry name" value="DNA_repair_Rad51/TF_NusA_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013632">
        <property type="entry name" value="Rad51_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020587">
        <property type="entry name" value="RecA_monomer-monomer_interface"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003301">
        <property type="entry name" value="PRK04301.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02238">
        <property type="entry name" value="recomb_DMC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22942:SF30">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN DMC1_LIM15 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22942">
        <property type="entry name" value="RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08423">
        <property type="entry name" value="Rad51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005856">
        <property type="entry name" value="Rad51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47794">
        <property type="entry name" value="Rad51 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50163">
        <property type="entry name" value="RECA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0469">Meiosis</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3994358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="33835" checksum="7B1ABA51416E8296" modified="2020-12-02" version="1" fragment="single">NVADIKKLKTSGICTIKGVQMTTRRKLCQIKGISEAKMEKIKEAAAKLNSAGFVTALEYSDARKMCFRIATGSDELNKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVSAQLPGANGYSGGKVIFIDTENTFRPDRLREIADRFNLDQNAMLDNVLYCRAYTSEHQFELLDIVAAKFHEEPGVFKLLVIDSIMALFRVDFCGRGELADRQQKLAQMLSRLQKISEEFNVAVFITNQMTADPGATMSFQADPKKPIGGHILAHASTTRVALRKGRGELRIAKIYDSPDLPENEATFAVTAGGIADGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWA1</accession>
    <name>A0A7D9HWA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062633</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001954">
        <property type="protein sequence ID" value="CAB3991978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWA1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="entry name" value="Serralysin-like metalloprotease, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36493">
        <property type="entry name" value="NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="553"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="669"/>
            <end position="1246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="343"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="384"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="433"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="686"/>
            <end position="741"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="742"/>
            <end position="762"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="763"/>
            <end position="811"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="819"/>
            <end position="846"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="860"/>
            <end position="922"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="938"/>
            <end position="1021"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1035"/>
            <end position="1062"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1077"/>
            <end position="1112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1126"/>
            <end position="1154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1182"/>
            <end position="1238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1246" mass="128607" checksum="2C2E2B66378FF0BB" modified="2020-12-02" version="1">MSAKIVENRDFLSLAEPWLLSFGLLQSDKIVDTKVMTRSHTVDRNVKSIRVYMENGFENWNLRGFLAVRTRFLAVRTRFLAVRTRFLVVRTRFLAVRTLREVPDAEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVTGGEDKITGGEDKVPDGEDKVPDGEDKVPAGEDKVPGCEDEVPGGEDKVPGGEDKVPGGEEKVPGGDDKVPGGEDKVPGGEDKVPGGEDKVPAGEDKVPGCEDEVPGGEGKVPGGEDKVPAREDKVIGSEDKVPAGEHKVSGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGDDEVPGGEDKVPGGEDKVPGGEDKVPAGEDKVPGCEDEVSGGEGKVLGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDEVPGGEGKVPGGEDKVPAGEDKVTGSEDKVPAGEDKVLAVRTRFLAVRTRFLAVRTRFLAVRARFLEVRTRFLEVRARFLEVRTRFLEVRTRFLPVRTRLLAVKTRFLPVRTRFLAVRTRFLAVRDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPAGEDKVPNCEDEVPVGEGRFLEVRTRFLEERTRFLAVRTSLLAVRTRFLAVRTRLLAVRTRFLAVRTRFLAVRTRFLVVRTKAPGGEDKVPGCDDEVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGCEDKVPAGEDKVPAGEDEVPAGDDEVPGCEDEVPGGEDKLSGGEDKVTGSEDKFPAGEDKVPGGEDKVPGGEDKVPGGEDKVPGCDDEVPGGEDKVPGGEDKVPGGEDKVPAGEDKVPGCEDEVSGGEGKVPGGEDKVPGGEDKVPAGEDKVTGSEDKVPAGEHKVSGGEDKVPGGEDKVPGGEDKVPGGEDKVPGCDNEVPGGEGNVPGGEDKVPGGEDKVAGSEDKVPAGEDKVSGGEDKVTGSEDKFPAGEEKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPAGEDKVPGCEDEVSGGEGKVPGGEDKVPGGEDKVPGGEDKVPGGEDKVPGCEYEVSGGEGKVPGGEDKVPGGEDKVPAGEDKVTGSEDKVPAGEHKVSGGEDEVPGGEGKVPGGEDKVPGGEDKVTGSEDKVPAGEDKVPGGEDNVPAGEDKVPNCEDEVPVGEGKVPGGKDKVPGGKDKVPGGEDKLTGSEDKVPAGEDKAPGGEDKIPGGEDKVPAGEDKVPGGEDQGSWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HX68</accession>
    <name>A0A7D9HX68_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">WD repeat-containing 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081847</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002767">
        <property type="protein sequence ID" value="CAB3995955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="338622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049916">
        <property type="entry name" value="WDR72-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44099">
        <property type="entry name" value="RABCONNECTIN-3B, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44099:SF4">
        <property type="entry name" value="RABCONNECTIN-3B, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="661"/>
            <end position="683"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="890"/>
            <end position="917"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="661"/>
            <end position="676"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="898"/>
            <end position="917"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1442" mass="159728" checksum="CF8AF9DCF34F2C12" modified="2020-12-02" version="1">MSTSAVVPLVFWGSTPPKHVVTCILVTYDQKTVITGSKSGQLGVWDIRHLDGGEVEVIAKSLIFGHNDLVSALACACVGLENQSAVISAAENGELCLWDVDDGLCIQTNTIVGAHTNLLPFHVSTGGNKEWRVVCHGYYLDVYVVDVLTLEVLYTLSSSASSNWLAAACVVRPPRRQEDVLVGITLSGTVKIWPLKRNPENKATEAMYDQMLSQMTGVKALHVVCNPFSQRTILIVSAKQWQMYDVSNFQFLTAMPAVSGATWSAADYIQSNCVLIWSKKGKAYMYKLPERCCPEKQVVPAGQVSVRLSEEDGQPQLIHTFQDRCQEKTFNGSRMMFSFGRREPFHKLIVEGNANGRVNIWRIDEIVQKLENNEESFGKSLEAIPCSETSSYSDVWKSSTKPCGLLDSLDGGQKPVKITSSLFLAAQGKIACGRQDGSIIIISATKAAITQFLTKDNTNPAAWPKYQKLIGHRSKVTCLLYPYGEYDRYTPEHFVSGSADFTVKLWNLTSGALLTSFSANGGEILRLTCTPPKCSIRIQHCVCSIAQDHSVALLNLRDHRCLLLASCHRFPVQTVRWKPAEDFLIIGLSDGSVYVWQIETGNLDRYVTGDAAVDILNAFDDESSKSSTDGSLRSRTVFTKKLSHIATNIPKMPSQMSLRKIKRTRSSSPRLRKRAAARSPVDSYQEMSKSVPVRVTSLKTGPNESEIHVMLFDMEALICHLLVEETKTQKLGSNTRKVNKDHTKHVSFTSGNQVSPHLKFLEEIHDGAQLLVSCLHSWGLDSEIDETCISRLGLLQPVKPVSFGLLTHRKLSLIVPGWYSNSARMSGSSQNVSGGNVHDSAVGTSVTGNMKFFESRWEFCSALTTQHSLSIVALTNTLMSMAQISFLPRFDKGPTSPRRSENTTKVPEMESTSHDENPSVAIGSMIRANIKAGWSRLATLYCCLLPDKLDMVCYRPPLLHVLARRWQDRCLEIREAAQAILVTELRRINFEGRAKVVETWVQYLPQEIEGSSILMESSDSDSDLSDSGGVSVTEDDFSEDVLNVLDGAKKLFQYDASRRQATSIIMLAVIGSEFQKDLGTLTNNKAEKTSNNGQKKIGFQGELLLPSRVVYLTGRALMFILLKSQSQSPRTLSYTSMRRAAIDLIGRGFPLWEPYMDVSAVLMALLELCPDNRSHVASFSKGLPLSSAADSQRSARHALTLISTARPLVFITTLAKEVARSSSAQASLSFNQASPAAIAVYSHVRHQPSSADIQHSSTLHRSKKEILRVLELMIEKTQQEVIKLLPEVVQILVHCIEPRHLKERGLMEIFPALFKFHMISYCSNTRRLAVGSKSGQLTMYELRSAKEQVIPAHSSAITAVQFSKDSKLLATYSYEEAKINFWQASSSLFGVLGSGIKCIRSTTVSKDVKITPVNLRQTKLVWVNQKSVVLLLPDSTQYKFTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I126</accession>
    <name>A0A7D9I126_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002578">
        <property type="protein sequence ID" value="CAB3994992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I126"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="31352" checksum="CC5C2B41681416A0" modified="2020-12-02" version="1">MSLNPGKTKIMKIYSQSKFPDLSPITIEVNNNNVKEITSAILLGVTLDQHLKWDRQINTIYKIINSRLYLLKRIRSYLTFQSRVQLYYALIYPHLLYCSTVWGNANNDRITCLLKLQKRAARLILEQSTEVPSIVLFRKLNWIPIFNLIKMRKILLVFNTLKTSWPPDLRKLFVFVRDSHPIPARSSITDLKVPSVKTTQAKSKISISGASLFNSLPSELKDIENHSIYSYKKKLKTYFFQLNYEVDHVNKFRCIDCKHITRCQCYSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I286</accession>
    <name>A0A7D9I286_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peroxisomal biogenesis factor 3</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Peroxisomal assembly protein PEX3</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A036185</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Interacts with PEX19.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003105">
        <property type="protein sequence ID" value="CAB3997463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I286"/>
    <dbReference type="OrthoDB" id="45930at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005778">
        <property type="term" value="C:peroxisomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030674">
        <property type="term" value="F:protein-macromolecule adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045046">
        <property type="term" value="P:protein import into peroxisome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006966">
        <property type="entry name" value="Peroxin-3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28080">
        <property type="entry name" value="PEROXISOMAL BIOGENESIS FACTOR 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28080:SF1">
        <property type="entry name" value="PEROXISOMAL BIOGENESIS FACTOR 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04882">
        <property type="entry name" value="Peroxin-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0962">Peroxisome biogenesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3997463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="374" mass="41964" checksum="439226B8365D8E17" modified="2020-12-02" version="1">MFSSLRGFFERHRRKIVITGALLGGAYALGKLAHWKLSDWYETQQVEFLAQSKKQLHFDGNQKTCNTTFYSLLPGLQDAIFELVDSEAITEKLKNKPSDKLLLWEQLKILSFTRTVTAIYASSLLAVFLRVQLNLLGGYMYLDVEGVADEGTSATPEESRRVYMSDPTQKKYLGIVRYFLEAGVKDLVGVVQNVVEGVLGSVSLKQKLSYHDIKRMLGQIRQCLKFSSPEQLIEGSTTSQLKISSIVLPKDSLSETDVIFSQLLNETADILESEDFQVVFNTCLDVGFMFVMKQIKSSFIVDQQDTPPDMICSIEDGLCSIHLPLAKICPIVNGKATEVFSEDKNDYLHDVVSLECVKSFAANIYEAFSSKPRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I321</accession>
    <name>A0A7D9I321_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002654">
        <property type="protein sequence ID" value="CAB3995385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I321"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="333"/>
            <end position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="820" mass="92971" checksum="6C86E9976A03E9B9" modified="2020-12-02" version="1">METIPNQDKQYDYNVHCPVGNSDRPLTEIIELCEDVISIDPDNSLNKTLQENCSLLKTPTEDQQSVTLKSTHCNEAAESGCEINTITNLANGESPETYQSNEELSHSMPAKTVNSTLKTQSEKPGPSKQVRAKSSELVFGQTPKQNTANKVKGHKSIKCTKRLSKEIYYDNNISGLIDKSEINCNPGVPVRHAEWVGRLPLIESSYKSASLRKSTTFNDFQRSCKRNFRKSRSNHRPRDWQRYLEFVRKTLHPRVTRPPIRLRTTNNLENHRDYCAVPSLFVTNLRNRKTVHAYNNLIPLQASENHTSRNACSTPLTPNDQISVPSSLNIVHLNIRSLRNIVHLTEVKELVKLNNIDVLTISESWLNSSVTNREIAIDDYKIHRLDRLHKKGGGVCAYIKKNIKATVLKDLSKVSVSNFHQLWINLQCQKNKSIIICVTYRPPDTSLNCFEDLLKSNYVQALTLNKQILVLGDLSCNMLENGQERRALTNFSTELNLTQIIKTPTRITATSQTLIDVILVSSTALVLENGVINTSISDHLPVYVLLKLKAPKMPACYSTTRSYKNYNPSLFSSDLVTKSDRLLSILSNTNVNTILETFKDVLHSTLDVHAPLKTFKIRNRSCPYVTNEIKELMKSRDLHLRRFQLTRHEEGDWVVYKEYRNNVKTEIKAAAKDHTFNEVREHKHNSRSLWKIINNIIPSKEKETQVYSKDPKTVAEDFNLFFTSVGRNAAATAESLAKDNNVALSNPLSNVITYPSDQLFNFQSVTCTEVKRIIMAMPSNKSPGPDKIGMRVIKDCLPIILGPLTHMINCSLMTSTFPDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4G3</accession>
    <name>A0A7D9I4G3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050982</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002832">
        <property type="protein sequence ID" value="CAB3996263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4G3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13610" checksum="8D3C32818FFAD1F8" modified="2020-12-02" version="1">MTEPIVNPDPTPNVTTGPPKKVKDPRRVEAGKRLAKISQQAKKVKKAREEENLKAEVRESCMTESDGGGWISVEKLCMILGLGIGLGSLYLTWKSRDENPVRQMNEIVGDHRKNLLLTCLIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8E1</accession>
    <name>A0A7D9I8E1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064855</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004835">
        <property type="protein sequence ID" value="CAB4004211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8E1"/>
    <dbReference type="OrthoDB" id="5976044at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="10881" checksum="12E24A39D4164D43" modified="2020-12-02" version="1" fragment="single">MESCADRYVHYLAEQLTPIAMNTEEIREHSKTDPELIQVRQCIENNQAHKLPPQYKPLEQELSIADNIILRGNRIILPTKLRSKAIKLAHEDHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBC4</accession>
    <name>A0A7D9IBC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028938</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004017">
        <property type="protein sequence ID" value="CAB4001163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBC4"/>
    <dbReference type="OrthoDB" id="411615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43383:SF2">
        <property type="entry name" value="AMIDOHYDROLASE 2 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43383">
        <property type="entry name" value="NODULIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="330" mass="37955" checksum="7B70D7E5C3F3AC23" modified="2020-12-02" version="1">MSPDNPNFVSPNMDFEDDRSNDEATKIPVQPRVGGNDKTPVVQNPHQVEENPEEDEVALPRESRNRRPPEQYGLSYTFNITKEENIQEPKSYNEAIRSPHAENWRKAMQAEYESLMDNNTWTLVDEPEDQQVLPGKWVYKVKYGANGQVDKLKARYVAKGHAQIEGLDFFDTYAPTCKPETFRILLATAARKDLYLGQMDVKSAYLHSKIEEQIYLEQPEGFVKKANSGQKLVCKLNKAIYGLKQAAKNWYEALTSLLLKKGFKRSCNDCCLFVRKEENGTFSYVLVWVDDIVVARETEEAINKIKSMLNENFKLDDRGDLNWLLGMQIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDC5</accession>
    <name>A0A7D9IDC5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004622">
        <property type="protein sequence ID" value="CAB4003416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDC5"/>
    <dbReference type="OrthoDB" id="10070745at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19763" checksum="E9D884047A10D4C2" modified="2020-12-02" version="1" fragment="single">RNASTFSARLYRNYQHSTFDENSELVKNLDDDFSFEELNVGLAYSDEPLADEEWLAKQQAKKERLEIEEKLCKRLDGSCRTKRCGNCGIELLTNGNKCYCCCELEGCEEAMNCKEVIKEVKGVQNAKCVTQHPGFSPVWLQKWSLKQASDRYKTKNKDKYKQIAAQERLDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IL16</accession>
    <name>A0A7D9IL16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073998</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006033">
        <property type="protein sequence ID" value="CAB4008139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IL16"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="17787" checksum="23E98B1C374397D0" modified="2020-12-02" version="1" fragment="single">MAVRTRFLAVPGGEDKVPGGEDKVPGGEDKVPCGEDKVPTGEDKVHGCEEKVPTGEDKVRGCEDKVHGCEDKVPGGEDKDPGGEDKVPGGEDKNPGGEDKVPGGEDKVPGGVGNVPGGEGKVPTGKDKVHGGEDKVPGGEDKVPGGEDKVPGGEDKNPCGENKVPGGEDKVPGGVGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J2K1</accession>
    <name>A0A7D9J2K1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A063745</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010805">
        <property type="protein sequence ID" value="CAB4020150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J2K1"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4020150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="430" mass="48467" checksum="6F96888C91735C18" modified="2020-12-02" version="1">MANNCQVNLAGKLLLVGDDEVPLVGQVRPVVNGLTRIVVRRTVAVPAMSEAIIPGKLKKCGEQRTWAVLESVANSKRNLLVARTLVDLSADDLPIRVMNLTNGYISLKKGTEIATCEPVACVRNLEHQPSKEEDSATIHKDKGGFVHLVDLYRRRKTFIGEGHKTQLIELLKEFQDMFSSGSNYLGSTSITTHKIDVGEAIPVKQRPRRLPIKQREESNKLIEEMRSQGVIERSQSPWTSPIVLVKKKDGSKGFCVDYRRLNKVTKRDSYPLPRVDTTLDAINGSRWFSTLDLKSGYWQVRMEESDKEKTAFTAGEGLWQFIVMPFGLSNTPATFERLMERVLQELLWTVCLIYLDDVIVHARTLAIQFSNLRTVFQRLREAGLKLNPKKCHLFQRTVRYLGHIVSGSGIAVDAGKTDTVSKWPEPKNKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JSI7</accession>
    <name>A0A7D9JSI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021231">
        <property type="protein sequence ID" value="CAB4035634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JSI7"/>
    <dbReference type="OrthoDB" id="5985308at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="16"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="30392" checksum="58F5706DFB3A92FD" modified="2020-12-02" version="1" fragment="single">MALQQQATAQRQSIGSKSISSKVSKSSKSSKKEKAKMDAELKRLAATQAEEAAIFEAEMEKKKIEIEFQTGEKVRKLKAEAALAERKAELMQEYDSDDMSSSNDENGSDRLPPPPITQLIKGEQTELWVKSCSSQTADKQALDNLESPERVNNQPKKYFENTCNRNKVETNTAGQKGHVTFNERGKNRSSARIIPEISKNQISDAQAVMLKVNMLQAMQPVKFDGNPSDFPTFRKRLIDNLEDGVLNDSQKIEFLPKFVSGDAYETVKRVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JUF2</accession>
    <name>A0A7D9JUF2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020907">
        <property type="protein sequence ID" value="CAB4035294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JUF2"/>
    <dbReference type="OrthoDB" id="6013776at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="26733" checksum="87A108029E0538B4" modified="2020-12-02" version="1" fragment="single">MHMYFCAPKAYAPFGLSDHNTIVAEPNVIAPKGNNKKIIIRLDYRASRKAEMGRYLGLFDWSQLFSPLDSSEEKWLVFHEVIHNGLNLLMPEKRMEVSTVDAPWMNKKLKTLIAKRQKAFNKNGNGSLDFKYYRNLVNRERKACRGKYYELNIQNLKGENPKRRWSEAKRLSGMKEKNSDLSSQIKIDEFSNFPQREQANIINTAFLEPIEEYRLVVPPPCRDLEESTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JUQ9</accession>
    <name>A0A7D9JUQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">E3 ubiquitin- ligase DZIP3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A014327</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021638">
        <property type="protein sequence ID" value="CAB4036038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JUQ9"/>
    <dbReference type="OrthoDB" id="5983427at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039:SF14">
        <property type="entry name" value="NACHT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="2">
        <location>
            <begin position="51"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4036038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1144" mass="131173" checksum="3888C90E33054AEA" modified="2020-12-02" version="1" fragment="single">DFVDSSVDSLPLRSSAYEAENSGRYSKVVKNLSRFDFTPHIDTLCSKFLEGTRKWVLEQIRAWFNDTSCENRVFIIRGEPGMGKSVIAAVVSHEMAAQLAGSHFFQYDNTTYNNTCLFLQSLALQMCGVIPGFKQALTNQVFENFSYDFNEKSAENLFTLLFADTFAEMSDPGSGSFLIVIDGIHDIESSSQREFVDLISNHFHKLPNFIRFLITTTSEEKIENLNPLYLEIDEEMKRKDLKIFIESRLPQSILDRELVVPQVVELSGNLMLNARFLCEIILSQCESEKYILPKTSENVFQQYFTMLENKWENITNFSRETFVSLLSVLLVAREPLPIAFLETAFLDKFDVPSCNLNSILLNDMSLFIMNDDHISFIHKSVKDWLLHHYNVDSQYGHKILAKVCVEYLDNVKNFRIKTRTLFSTAKVGFALRHCIYHMLQERDKYINFVTTYAVDLYVLYASICVNIDTAIENFDSIINHEEYESLCDQTKENLNQLLQLLLTFQFVLRKRPHSFFQLVLNETTQDLSSNASEFLKSFKQFQYFEVVRHGPEPIQEYFECSAFPYTSIDVPCQKNNDVLCLKVSNQIYVIQLVSTNPYKILWTTEELSNDQICSSCIAFHPSTNVVLPGRLDQVLSLIDGSWQQGPFSCEEKCFFTNCCFSSDYTMMVTTYDDSSLVVWDLVNAVKVKNIECPSVPNSFSFSASGNFLAAVDTSFILVHDVENDFMIKETISLQALRFRDHAKLICTFRSDAWLLETDNSDIYVVCPDGSTFRGYPLVNLKELYLPHNSKALTDCNEVSNFGYKTSWITEARKGYVKKEGGNIALDRCTFIPLDDNNALAISNSNEESQSTCLLRVDLSKFKKVKSSISRDSTIVYQHDPNSQKFSILRFLNGEWQFSEEFVKPVIAFAVVLSGVFLVTSGTELEFWNTDCSNCLKSFPQASKINRCETVSNHTIACITECEVNFIDSRNEEVVSTTSLSPNEEVLACSSKYDVVISELHSWSTEAFFVRNNERVGTFYVYFDVFKAVYSPDARMLVVASVGGDISIIDIDNLKYYSWMSSFSLILSDSIHFVNDMYFVYVERIKEVKKRYLLYLCDDCEIVTCFSLKDEPKAISMNPEIQTLVVSFQASRFTEFKIHLAERKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0D0</accession>
    <name>A0A7D9K0D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025447">
        <property type="protein sequence ID" value="CAB4039480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0D0"/>
    <dbReference type="OrthoDB" id="7763192at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="494" mass="56106" checksum="740270916681B018" modified="2020-12-02" version="1">MAVIKDALPYILPTLTQIVNCSLETGVFPTAWKKAEVIPLLKEGDYEIPNNNRPVSLLVAASKICERVVLKQLTEYMTKKKKFTKHQSGNRKLHSTETLNIFISDLILQSMDRREVTALLLLDLSKAFDSLDHFILLRKLSNIGISKPALFWFKSYLTGRCQSVRIASVLSDECEITRGVPQGSILGPVLFNIYINDLPGVPKESNLESYVDDSKIYLAFSIRDAELAAMKLTEDMRRITAWCCLNSLLVNPEKTKLLILDTRQMLEQEPENFQITILGENITPVAVAKDSGMILDSCLSYDEHIASVVSSCIAGLGQISSVKHIFDRKTLILIINSLIFSKMYYCSAVWSNTSQRNIEKLQAVQNFAARIVTGTRKYDHVTPVLQQLGWLPVKYMLKLREAIFAFKCLKGLASLYLREKFHVRSDVHGVNTRQKNILDIPMYRSAASQRTFHYRVVSLWNSLPQSLENIDTLTHFKVEYKRMLLEEFLTVSGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K135</accession>
    <name>A0A7D9K135_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038414</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025291">
        <property type="protein sequence ID" value="CAB4039369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K135"/>
    <dbReference type="OrthoDB" id="5987622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="14757" checksum="8DA52CACA16A5711" modified="2020-12-02" version="1" fragment="single">CEKKLASKEKVACNLDSATSSESDVELGNESVEEVESCYPENNTSVNACVDSNRKERPELVVISSDDEMGQQVNKKYLPKKDKRKRMKADLLDELADSLSGLSSAENTPAKKVRVASLKVEDTELLCRNLFDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K7Z2</accession>
    <name>A0A7D9K7Z2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088242</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029542">
        <property type="protein sequence ID" value="CAB4042140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K7Z2"/>
    <dbReference type="OrthoDB" id="9995434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="entry name" value="Creatinase/methionine aminopeptidase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="entry name" value="Creatinase/prolidase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050422">
        <property type="entry name" value="X-Pro_aminopeptidase_P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43763">
        <property type="entry name" value="XAA-PRO AMINOPEPTIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43763:SF6">
        <property type="entry name" value="XAA-PRO AMINOPEPTIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16189">
        <property type="entry name" value="Creatinase_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="234" mass="27074" checksum="D30622E12456F827" modified="2020-12-02" version="1" fragment="single">PLKEKNITLVGVRENLVDKVWPNRPTEEAKKVAVQPYKYTGKYWYDKVKDVQKEMKKVDATAHVVQELDSIAWLLNVRGKEIPYNPVFFAYVIVTVDKVLFFVNSSKISDTEVQKHLQLSTCSGKTYCITQMAYDSIADELKKLSADDTAKIWLSPKDSHALRLDVPTEKVYKEWSPIRLMKGKKNDVELKGMRYANLKDSVALAEFFLYAEEQVKKKAKITELSLEKKMEEFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAD0</accession>
    <name>A0A7D9KAD0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063167</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029937">
        <property type="protein sequence ID" value="CAB4042343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAD0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14985" checksum="BF8FB18C4CFA553C" modified="2020-12-02" version="1">MERIEQSQKSRNVVTIHEIMHAGAKTLPLEIRYTSCEIESLANKTRKIVHANNLKRFSIDYDIDQVYEKSEDTESSECDFDEIGNILPNPEERQNVQRNDDGANVMHGYNLRRNRRMPDRYGIPVVDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAU1</accession>
    <name>A0A7D9KAU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A012340</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030922">
        <property type="protein sequence ID" value="CAB4042828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAU1"/>
    <dbReference type="OrthoDB" id="8626508at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003112">
        <property type="entry name" value="Olfac-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050605">
        <property type="entry name" value="Olfactomedin-like_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23192:SF87">
        <property type="entry name" value="AMASSIN-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23192">
        <property type="entry name" value="OLFACTOMEDIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02191">
        <property type="entry name" value="OLF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00284">
        <property type="entry name" value="OLF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101898">
        <property type="entry name" value="NHL repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51132">
        <property type="entry name" value="OLF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4042828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="26225" checksum="FA385FD55C2033EE" modified="2020-12-02" version="1">MRDPLGLLGPEKIWYMNGYNGNKVLEFEGMNHFKAGQISKTYILPHNFDGTGAVVYGRYLYYNRANSKYVVQYNLTTGTVTRLVIPNSSIKPRTHYYQWGGYTTMDLSVDESGLWVLYAYESNSGKLCATQLDPLTMSTLHTYCGISSESMNSMGNAFVACGVVYSIDSYNSATTTINYAYDTTKSSGTNPAIKFVNKFTYNSMVTYNPREKVLYSWNNKRQITYPLEFEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KV80</accession>
    <name>A0A7D9KV80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011162">
        <property type="protein sequence ID" value="CAB4020873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KV80"/>
    <dbReference type="OrthoDB" id="5984319at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12985" checksum="3D5081F9DC5BC1C9" modified="2020-12-02" version="1">MNVLPCFRGRARECLPFVANKVGFIQSQTNPEQWQYIGTRDNPAEMCSRGSKAAHLIDSVLWWRGSQFLPKTELEWQLKNIVNEGGIGRKMEYTLTCLVQPTVSSSSPSWRLNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6Z8</accession>
    <name>A0A7D9L6Z8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015618">
        <property type="protein sequence ID" value="CAB4028642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6Z8"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18364" checksum="623A8F6285852E9D" modified="2020-12-02" version="1">MSPALFNIHINDIENSIPDGLAINICKYADDCTQDEVVSQDSSSHMQEALEAVQEWSNRNKMTINSKKTKDMWICFNTAIPAPEPLVIGNEAVERVNSHKLLGVWHQNNLKWNCHVKNIVRKANKRMFSLRECRRANLPTEVGITSYESKIRPVLEYAALI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LC03</accession>
    <name>A0A7D9LC03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hippocalcin 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A014562</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016104">
        <property type="protein sequence ID" value="CAB4029338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LC03"/>
    <dbReference type="OrthoDB" id="191686at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000003">
        <property type="entry name" value="Calmodulin A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028846">
        <property type="entry name" value="Recoverin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23055">
        <property type="entry name" value="CALCIUM BINDING PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23055:SF192">
        <property type="entry name" value="EF-HAND DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00036">
        <property type="entry name" value="EF-hand_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00450">
        <property type="entry name" value="RECOVERIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4029338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="20334" checksum="00ED4BC51882824E" modified="2020-12-02" version="1">MTFWYLLFAVDMGKEQSKLKPRDLHELTTMTKFREQEIKIYHKEFPKGSKSGTVTVNDLKKLCSNFFRDGDPSEFAEHIFRIFDQNGDGVLDFHELIVSKAILKKGDVNERVKWAFDIYDIDGNGYITRNELLGILTAIEKFISHKITEHLQQLRQVRYLNVWTRIRMGRYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNP1</accession>
    <name>A0A7D9LNP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-directed RNA polymerase II subunit RPB3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021313">
        <property type="protein sequence ID" value="CAB4035717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNP1"/>
    <dbReference type="OrthoDB" id="5965440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005665">
        <property type="term" value="C:RNA polymerase II, core complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006366">
        <property type="term" value="P:transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.12">
        <property type="entry name" value="DNA-directed RNA polymerase, insert domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.10">
        <property type="entry name" value="RNA polymerase, RBP11-like subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011263">
        <property type="entry name" value="DNA-dir_RNA_pol_RpoA/D/Rpb3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036603">
        <property type="entry name" value="RBP11-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036643">
        <property type="entry name" value="RNApol_insert_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050518">
        <property type="entry name" value="Rpo3/RPB3_RNA_Pol_subunit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11800">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11800:SF2">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01193">
        <property type="entry name" value="RNA_pol_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56553">
        <property type="entry name" value="Insert subdomain of RNA polymerase alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55257">
        <property type="entry name" value="RBP11-like subunits of RNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="DNA-directed RNA polymerase RpoA/D/Rpb3-type" evidence="1">
        <location>
            <begin position="20"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="68" mass="7867" checksum="7BD42032661A3D90" modified="2020-12-02" version="1" fragment="single">MPYANQPIIRISELTDENLKFIVENTDLSMANALRRIFIAETPTIAIDWVQIENNTSVLHDEFIAHRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ME12</accession>
    <name>A0A7D9ME12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003198</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020050582">
        <property type="protein sequence ID" value="CAB4046351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ME12"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="69" mass="7710" checksum="0A4A6E9836B0BC4C" modified="2020-12-02" version="1" fragment="single">LIGAERELKEAWDKIDRSELHKSGLQNGLTWKFGSADSPWYQGAVESLVKAAKRAIVFAVGKRRLTVPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNW8</accession>
    <name>A0A6S7FNW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000977</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000129">
        <property type="protein sequence ID" value="CAB3978623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNW8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="17138" checksum="989927EFFE0EA3A8" modified="2020-12-02" version="1">MALKGGGEKNAKRQKSSDGGVVDRRTIELVRKLFNERDREKREQNIEEIAKMVVARNDKRSKISKLAEMVKKTKTLYKEKRNYNIEDRDFIELAALVQSHKNVSVPKKAFSVRQIRTHERFGYNEYIFDVNVGSEHMGSLPDFFAFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G445</accession>
    <name>A0A6S7G445_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070355</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000575">
        <property type="protein sequence ID" value="CAB3983096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G445"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="593" mass="67456" checksum="31716BB88BA99223" modified="2020-12-02" version="1">MWKVIRGCLPSKDSEKPVYKKDHKKLANEFNEYFASVGKIAADKVKRLAEVNNIQMTTALPPARHRSSLDLFEFRTVTPDEVRTIILNSPSNKAPGADKINIQFIKDSLEVILDPVTDIINCSLMTSTYPSMWKIAEVVPLHKEGDPEIASNNRPISLLSCLSKICDKVALNQYTEHLTNHRLLTEHQSGNRKKHSTETLNIAVTDMLLEAMDNKKLSIVILLDMSKAFDSVDHNMLLQRILNLGVSSAVHKWFESYLSDRWQYVRIGTTSSAPVALSYGIPQGSVLSPFLFNIYTDSLSSVPKSCSLESYVDDSKTFLSFSLTHMEHSLLHIEEDLHRIFEWCCNNSLLVNPGKTKMLVVGTRQLMNQLESPVYINFMGENLAPVTEVKDLGMLLDSHLTYDKHIQALSLSCISKLRQIGRVKHNFDQSTLVTIIDTLVMSKINYCSTVWSNTSDGNIKKIQLIQNCAARLITGVHKYDHISPTLNALGWLSIKEHLLYRDALLTFKCMNDKAPQYLCDNFEPRNRIHNRDTRRNGDLDIPKYRTSIGQRSFKYRGTKIWNGLDTELKSISDLNNFKTKLKTILIEKRCLSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G639</accession>
    <name>A0A6S7G639_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A005706</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001167">
        <property type="protein sequence ID" value="CAB3987398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G639"/>
    <dbReference type="OrthoDB" id="1681765at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3987398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="24049" checksum="2CB408ED6FB3DCFB" modified="2020-12-02" version="1">MVDRANSKIGYAIDKNLLDIPTPHIIENSGSTKEYPYVFAADDAFSLKTYMLKPYPGGISELSQRIYNYRVCRAQRVIENTFGIMATRFRVYRRPIIASVDIARNVVKATIALHNFLIITQRSQDMYNYCPRNFPDQNGTRGRIIPGQWRQEVGTTCLSRLQRNARGSNNSSRSAQQVRDDYKDYFNSPEGAVIWQNNAVTATTDPFDLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8R8</accession>
    <name>A0A6S7G8R8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">G2 M phase-specific E3 ubiquitin- ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A021223</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000444">
        <property type="protein sequence ID" value="CAB3981920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8R8"/>
    <dbReference type="OrthoDB" id="2384350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="21908" checksum="14A3D788FD795F27" modified="2020-12-02" version="1">MPSRSDCSYDLYVDLLDNLDAHEDDDIQRAIQESLNDEQIVDPKAPLTDLQELLKEHKLSCTRSGDPNEIIVRRTKLLESAYRAVKSKMFDCCKELVVQFSGEDAIDAGGPQREFLEGSEGKMTFTHNLKLLENKYWLAGRLVGMSLIHDGPGLECIHPIVYQLMCGLPCDVYDFDVTLITDHDFVETVQRVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEH8</accession>
    <name>A0A6S7GEH8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Vesicle transport protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A024710</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Membrane</location>
            <topology evidence="2 9">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the SFT2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001600">
        <property type="protein sequence ID" value="CAB3990095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEH8"/>
    <dbReference type="OrthoDB" id="660759at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007305">
        <property type="entry name" value="Vesicle_transpt_Got1/SFT2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011691">
        <property type="entry name" value="Vesicle_transpt_SFT2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23137:SF36">
        <property type="entry name" value="VESICLE TRANSPORT PROTEIN SFT2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23137">
        <property type="entry name" value="VESICLE TRANSPORT PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04178">
        <property type="entry name" value="Got1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="65"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="130"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="18"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="18"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3990095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17229" checksum="A256CB8269705CCC" modified="2020-12-02" version="1">MDLESKISSLKNYVKLSTQDDREAAHKNEESSNSNAEANGWWGTISNKAQEPDPWLPGLSKTQRIVGFFMSLLLGMFCFGMAAMLIPFIILKSRKFVALYTMGSIFTLGSFSLLWGPYHHFKHLISVERLPFTVTYFGSMSATLYVAIFVSIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMJ1</accession>
    <name>A0A6S7GMJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026841</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002217">
        <property type="protein sequence ID" value="CAB3993248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMJ1"/>
    <dbReference type="OrthoDB" id="9973512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="35548" checksum="878889BB1C2E1BA0" modified="2020-12-02" version="1">MTIIGIKKQAPICFVTKLIEQQFSIQWDTDSVNGVKEPEDFNFYTFCDVQKLKKARNGNDEQMGGKTKHLKYDPRRAHVMVKLYRYCRANTIMEYSVKGLCPYVYIRTRRGWNEWNPLGGTNTFKSAEHSHFSWMNNHIYDYISSHAIKIKENGIEKALKKHTLYWAVVQDGDFLPGTHLQLNVIGKTQVYVGKANNGINGRWLADANSHCKMMKICLGNVQEMTTYEPLRVHGIQLVDARILLAKLRGEQCALFVMNTYNKDAASVLEEDEKAHIKGELPGNGDENVELLTQCPDWKPKYMAYGMNGRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GP80</accession>
    <name>A0A6S7GP80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein LOC110056377</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A036409</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002269">
        <property type="protein sequence ID" value="CAB3993483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GP80"/>
    <dbReference type="OrthoDB" id="5952546at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6589" evidence="3">
        <location>
            <begin position="427"/>
            <end position="910"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="732"/>
            <end position="751"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="331"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="732"/>
            <end position="741"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF20231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3993483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="977" mass="111293" checksum="972128FC560980D5" modified="2020-12-02" version="1">MSAKEKIDAENYENICLSCKNDEIKKYRVLVNSGRSQYNFLEIFREKFGVFLECLCEIYPRCFLCRRCVQEIKRLVSAENTINAVNKYFNELFKERELESISKIEGKRLCHNTSFEIPTSKKVKTYLAYNEQGGNSHSSQQYSSSLFSIQPQIAYPNHMFIPQPYAGLAVGSVTVQSQRLPLAMNHNNFDIQNEGIDFVNASATSTPKKRQVPTNTEPTVVTVSVKYPSKSKQKQLRGDFAKLGKALVHENNVGIANTVTKLIHLREKSNKEDANWCPGMAMAGSVLLKQRNKHMNAMAAIIGMTLKTSSTSTVISTFAKLKLSCCNLTILKKMDALRQNHDEMLQNAKQQIEESYKDGKFGPSSHPGFSIPFDNIDVTIGRRHMTIAHQNQDCHWVNHIYVQNRVSGNYLPASGCSQDIDKLDNIDILVSSQDEKKQKFEYGILVSRFLVEHFKQFEFLKKVCILHITHRYTKEMGTKSVKEHLGIIFKNENANDEMIEILKQLQSYLLCHTNEDEMQFEPQILAGDQLTVEQTINVKQSVSNGYKAEDRLEGIIMQLGDWHTGLKILSSVSNGYKAEDRLEGIIMQLGDWHTGLKILSSVSNGYKAEDRLEGIIMQLGDWHTGLKILSARVIAAAMNVLGFESLTAAPSKFPIPEGLHNKPRSEQIKYLNDAAGKIVDELVFTHEDSDHLIDGILTTQERENMVRNQQLTTDKRFPCRFEGCDKSFKYDGKSRQKHEQTHNPPPQIPITDDHIDDTKDDVYSYNCALLAHGLFFHNFLDAVKEGDGRRIMRQYKYLLLYCKADNNHSVKYALECLYQMFLVNGLLSPRDAHRYIWNRSVNNNGMVGKNIPLDLEVEHSNKFLKQAIKNLGPNVTPAAVSRICEAEKSTRMILRNLQESICHKGKSGKHTARSTDKDLKVIVDKLVENHVFTKQDGRCYKSLCGFVRNPLSQLDMSIIFNWINEHKKNVKLNIKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVU7</accession>
    <name>A0A6S7GVU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036767</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001358">
        <property type="protein sequence ID" value="CAB3988650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVU7"/>
    <dbReference type="OrthoDB" id="10627501at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="215"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="215"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="225"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="32496" checksum="FC1C00B1244E5D0F" modified="2020-12-02" version="1">MASERMFDDSIIIEDYFASPLKSGHENPTTTTENINLVCLGNEFSWEGTLDGLKAFIQNDLELEGNWSSPGGDVKVYTGPKYTINGMEDLKRSLGSFAMIVTKTYCCCRELADEVKRIEGDIKLLKNGVKTHEANETLQCCMGACKNEETRLRDYLEAANATIKDLTPKVQNLESEKSSLLTTIIIIQEDNSQRTNNMHTEKDPHKNAWVEVKNNKKKKHKQNAKQKEQQNEPPIRSDAEKLVAKTNVVCGKKPEAHHQRQLDQAIRPKMMRTSTLREAIQALSQQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H172</accession>
    <name>A0A6S7H172_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001800">
        <property type="protein sequence ID" value="CAB3991167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H172"/>
    <dbReference type="OrthoDB" id="2344127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="20674" checksum="EBC98DE51576EE18" modified="2020-12-02" version="1">MSVLGKNLQKHDVRYFSTNSDKKAAIVERFNRTLKTMMWKYFYSKGTYNWVDVLDELTNNYNHTKHSSITTTIPNTASQTKTKYGLRYTGYEANFTEDIFKVVKVFRGDPNMYEIESHDGEPIIGKFYEEELSAVDKKDDVYRVTKINGTKINGATFKDIKIIISKNGKMIYSTDKNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H725</accession>
    <name>A0A6S7H725_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Helitron helicase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001993">
        <property type="protein sequence ID" value="CAB3992170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H725"/>
    <dbReference type="OrthoDB" id="416437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="153"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="38078" checksum="47D8F0897E186506" modified="2020-12-02" version="1">MIKLEVSQKSVLDKIRDLPDSNDRRKFRIAYQYLTNSSDSSYSHFIQLRQQIVEGEGQLNCFDFSATVGIECTLWPNIYPFTKWCESTISGKQIRLSPKKAFSTKVFSEITDYALHYELLQWQYDRALFKVVSGAINTACFSNCSPARALDTKPFSKTYWQWQHRYLLDAVEQFGLPDAFITISPYEWSFPFAKWVYCARQSTGMGPTQLAAYETFNITHTLEQVVRGYLCGSTSQKWSQHVFNYNKIATEKNVKTFFYCFEFQERGTVHLHMLVWLKNITKADHQLLRADIPHSHPELAFLVQKLQPSDKKSHCLNLQYEGIILSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HA22</accession>
    <name>A0A6S7HA22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051396</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002177">
        <property type="protein sequence ID" value="CAB3993070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HA22"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="53" mass="5673" checksum="AD6438084DC8D4D3" modified="2020-12-02" version="1" fragment="single">MIPWLSRHPTAITKISTPVFFNFLAFATAKTTAKTTAKTTATATAKTTAKTTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHF4</accession>
    <name>A0A6S7HHF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032678</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004784">
        <property type="protein sequence ID" value="CAB4004006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHF4"/>
    <dbReference type="OrthoDB" id="8059405at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="60" mass="6845" checksum="08CA5CC5AF9FF517" modified="2020-12-02" version="1" fragment="single">KPKDAWKIIHRILSPNPKPLRVEPDELTTTGILKGSVSAYLRGHNTTTVMLAMRDDIYRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHQ4</accession>
    <name>A0A6S7HHQ4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">KRR1 small subunit processome component</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">KRR-R motif-containing protein 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A057029</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Component of the ribosomal small subunit (SSU) processome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Nucleus</location>
            <location evidence="1 8">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the KRR1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004532">
        <property type="protein sequence ID" value="CAB4003077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHQ4"/>
    <dbReference type="OrthoDB" id="441223at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd22393">
        <property type="entry name" value="KH-I_KRR1_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd22394">
        <property type="entry name" value="KH-I_KRR1_rpt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1370.10:FF:000011">
        <property type="entry name" value="KRR1 small subunit processome component"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1370.10:FF:000014">
        <property type="entry name" value="KRR1 small subunit processome component"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="entry name" value="K Homology domain, type 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041174">
        <property type="entry name" value="KRR1-like_KH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048550">
        <property type="entry name" value="KRR1-like_KH1_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048548">
        <property type="entry name" value="KRR1-like_KH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048549">
        <property type="entry name" value="KRR1-like_KH2_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024166">
        <property type="entry name" value="rRNA_assembly_KRR1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12581">
        <property type="entry name" value="HIV-1 REV BINDING PROTEIN 2, 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12581:SF0">
        <property type="entry name" value="KRR1 SMALL SUBUNIT PROCESSOME COMPONENT HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17903">
        <property type="entry name" value="KH_KRR1_1st"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21800">
        <property type="entry name" value="KH_KRR1_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006515">
        <property type="entry name" value="KRR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 8" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="5 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 8" id="KW-0698">rRNA processing</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="239"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="284"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="239"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="284"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="336"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4003077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="43238" checksum="9468EB405923094B" modified="2020-12-02" version="1">MAEEESVSEVPSKKNRFRKDKPWDHEGIDHWKIEKFTAEDNRHGLLEESSFATLFPKYREKYLREVWPLVEEKLKEHGIKCQLDVIEGSMSVYTTRKTWDPYIIIKARDMIKLMARSVPYEQAMRVLNDSVSCDIIKIGSLVRNKERFVKRRQRLIGPNGATLKALELLTECYIMVQGNTVAVMGSYKGLKAARKVIEETMKNVHPIYNIKTLMIKRELAKDPALKEESWDRFLPKFKKNSVQQRKKPKKAKKIYTPFPPPQQESKVDKELASGEYFLKEKEKRFKAQEEKKNKQAKAEGVRKERREKMFVPPEEEKHVKREHKKDSNTEVDVQAFKKKIKASQKRKNSGLIDSKTTNIKEKKRKKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKC4</accession>
    <name>A0A6S7HKC4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Autophagy-related protein 2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A062388</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a 1,2-diacyl-sn-glycero-3-phospho-L-serine(in) = a 1,2-diacyl-sn-glycero-3-phospho-L-serine(out)</text>
            <dbReference type="Rhea" id="RHEA:38663"/>
            <dbReference type="ChEBI" id="CHEBI:57262"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(in) = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(out)</text>
            <dbReference type="Rhea" id="RHEA:38895"/>
            <dbReference type="ChEBI" id="CHEBI:64612"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Preautophagosomal structure membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ATG2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005284">
        <property type="protein sequence ID" value="CAB4005704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HKC4"/>
    <dbReference type="OrthoDB" id="18982at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061908">
        <property type="term" value="C:phagophore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034045">
        <property type="term" value="C:phagophore assembly site membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032266">
        <property type="term" value="F:phosphatidylinositol-3-phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043495">
        <property type="term" value="F:protein-membrane adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000045">
        <property type="term" value="P:autophagosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000422">
        <property type="term" value="P:autophagy of mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061723">
        <property type="term" value="P:glycophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006869">
        <property type="term" value="P:lipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034727">
        <property type="term" value="P:piecemeal microautophagy of the nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061709">
        <property type="term" value="P:reticulophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026849">
        <property type="entry name" value="ATG2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13190">
        <property type="entry name" value="AUTOPHAGY-RELATED 2, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13190:SF1">
        <property type="entry name" value="AUTOPHAGY-RELATED 2, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13329">
        <property type="entry name" value="ATG2_CAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0072">Autophagy</keyword>
    <keyword evidence="6" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="8" id="KW-0445">Lipid transport</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00018070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00024615"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4005704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1077" mass="121033" checksum="666C673CC68478BF" modified="2020-12-02" version="1">MLLVKSTPYRFGNDLLLWEPSLGPDAKKPDYNAVLASNWIDVDIAARLKNGKNVQNNFQMCRSAINQDSYSSDEDDSDVSDQQKILHTTEKKPTNTLALTLNSSKLRIAMFSRTKIENNEDGFGKLLLHFDNAQLFYVLDYKGQPNLCYINAQAQACSLHHAIHVDEVERDMDNTIFVPGDLYRTLYESDSGVKVTGSKTNMDNTRAMLSLAVKSYWDVDRNSKDIVVALSLSGGTLRHRMVNEGQMWILQMIDYFGVTDEEVLGFIPPVVVTMLHVHFWDCALYYRPLHIPYQVLITIEGFSISSNITLDSKTSILRFIIDNAVLLISNNKDETMNVVKDYISVADVDLFELSLNTVNDDEKNSPRRTLTLSNNIVHVRTCSDSLSAVLDIVRYIVSDGDFPQDSTVRIQSNDVLNGDEQTEMFDDSPVEQRISEDGCLHDLMSDAMDESSHDMHDFVDGGNEEFKARSQSKTDVFHFPDESQITSSHEKGSHTPSNEIFDDEWPDDDFEILDHPEKEQEVVCNGPEVTSFCDEIKIIPDHFTVPVGGVDQLKPPSNYPTPLLVYTVKEMSILWLIYGGSDFQTNKHNRRSERKFWAENGRTFHEDDDVDDDPVVIGNHGNKKRSSSTKVNWKTNGGESRDINTLVEVQLNKVRFQYEEYPAETKQAWRQVLLIQDVEIRDRLSSSQINKLLYQYSTEARPKQTHSNMISMKMLGLRPDDGLSSQEGCLRVSLKPLRLNIDQDTLQFIINFCKDLSSAEDTNPQEAEPQLAIAPSSQDIAVEKDLDEPPLSSTPPSSSSSQDTPIFFRLVEFSPDVPIRLDYHGKHGMDMGQRSLAGVLFAFAQLNCSEITLRRLCHRSGLMGFDRVLSYALNEWANDIKKRQIPGILGGVGPTYSFVQLVQGVKDLFWLPVEQYRRDGRIMRGLQRGASSFTTSSAMAFIELTNKLVQVVHGAAEVAYDIVSPTENIPPGSHGKIVKRRLNSEPADLRQGIANAYNVVTEGFGKTASNIVQVAKEEHENKGMTGAVGGVLRHIPSAVVQPIILATEATSNVLGGVRNQILPDARREAAEKWRVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLS9</accession>
    <name>A0A6S7HLS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Engrailed, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A032077</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 3 4">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004822">
        <property type="protein sequence ID" value="CAB4004160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLS9"/>
    <dbReference type="OrthoDB" id="6159439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050720">
        <property type="entry name" value="Engrailed_Homeobox_TFs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24341">
        <property type="entry name" value="HOMEOBOX PROTEIN ENGRAILED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24341:SF6">
        <property type="entry name" value="HOMEOBOX PROTEIN INVECTED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 4" id="KW-0371">Homeobox</keyword>
    <keyword evidence="2 3 4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="DNA-binding region" description="Homeobox" evidence="3">
        <location>
            <begin position="52"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4004160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="21508" checksum="08E18DEF15E2C0E2" modified="2020-12-02" version="1">MADNWEDVVEYLLRNRRLREMVDDVLNSLDEISPDCRFTTDENRKHEKKKKNKRRITKPDLIQKQRLLKEYQMIKYLTQERKKELARELNLSQVTVKNWFQNRRRREALLKRNKTVNKMRRMSIRKNDDGVPCLVPRNVDIKISEVLKSETRQLNYQNNLPGFVVTQDENGICLLHEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVA1</accession>
    <name>A0A6S7HVA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Metallo ase inhibitor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A063650</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the protease inhibitor I35 (TIMP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006149">
        <property type="protein sequence ID" value="CAB4008527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVA1"/>
    <dbReference type="OrthoDB" id="6041373at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008191">
        <property type="term" value="F:metalloendopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002020">
        <property type="term" value="F:protease binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051045">
        <property type="term" value="P:negative regulation of membrane protein ectodomain proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.370.10">
        <property type="entry name" value="Tissue inhibitor of metalloproteinase-1. Chain B, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001134">
        <property type="entry name" value="Netrin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001820">
        <property type="entry name" value="TIMP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008993">
        <property type="entry name" value="TIMP-like_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027465">
        <property type="entry name" value="TIMP_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11844">
        <property type="entry name" value="METALLOPROTEASE INHIBITOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11844:SF25">
        <property type="entry name" value="NTR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00965">
        <property type="entry name" value="TIMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00206">
        <property type="entry name" value="NTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50242">
        <property type="entry name" value="TIMP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50189">
        <property type="entry name" value="NTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0481">Metalloenzyme inhibitor</keyword>
    <keyword evidence="4" id="KW-0483">Metalloprotease inhibitor</keyword>
    <keyword evidence="5" id="KW-0646">Protease inhibitor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4008527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="27978" checksum="6007157B0D8C61FE" modified="2020-12-02" version="1">MLILCFILIASFTTTLMACSCKGFHPQEHFCQDDYVLRIKVVGSLKVDRSDETPYTPGILRFEKIYYPIRIIKIYKGNISGLTHLKPLRRHSNKVRYISRLYVPSRISSCSLSLTKTRIYVVMGQIHQGVLHHGLCNWRSTWKHITHAQLNGLKKHYAKGCECSIRTCPTREWCKKSQLPTECRWVSNDGFGVSQCVDRWQVCRYNRISRSCKWRQREHPNFKKCVNQVRWPKKLENS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HY44</accession>
    <name>A0A6S7HY44_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002166</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007097">
        <property type="protein sequence ID" value="CAB4011285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HY44"/>
    <dbReference type="OrthoDB" id="7477527at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21328" checksum="6B25194FBC42AB2A" modified="2020-12-02" version="1">MRVTLTPEKTVNLKLCLHTLKHPKLTIRELAHLIGILVSSFPGVQYGPLHYWSLEMLKSEALKSSKGNFEALVSINNECVEDLQWWVDNIERPKADITIHTDASKMGWGAVVNKTAIGGRWTSLESQEHINSLELKALFMGLKSFYRNLQHKHVQAFMDNTTAVAYVNSMGGTKSTQVNKPCKGSLELVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYT7</accession>
    <name>A0A6S7HYT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002558</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006608">
        <property type="protein sequence ID" value="CAB4009897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYT7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="59" mass="6743" checksum="CFFC91B908A10975" modified="2020-12-02" version="1" fragment="single">AGTPVKQVRSKKDGCKPECHKETAAKVHGDCQVKDRPKVTTRREDRLVINRTLRRRTST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3I2</accession>
    <name>A0A6S7I3I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450 20A1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052389</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006766">
        <property type="protein sequence ID" value="CAB4010380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3I2"/>
    <dbReference type="OrthoDB" id="1470350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052666">
        <property type="entry name" value="CYP450_20A1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24280">
        <property type="entry name" value="CYTOCHROME P450 20A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24280:SF4">
        <property type="entry name" value="CYTOCHROME P450 20A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="336" mass="38504" checksum="2AF61B57705F8A8C" modified="2020-12-02" version="1">MRVSTEKRHISTEKRLSVTEQRQYSTEKFDFHGITTHLYGEGASFYGEGKGNLEDMQDAGSLHEFLITLHEEYGSLVSFWWGTQLVVSLASPEMFEEVKALFDRPKLLFEAFSDLIGHKSIQYANGAEGRKRRHLMDEGFSHTAVAYYYDDFVKVANELCDKWASQPSDQHIPLSQHMLALSMKAVALAALGSGMKDEKQLLQMSKAYHVCWKEEENVLKGNLPEEGDGRKENFVKNRDYLRGVVKDVIRGRRGQKDKEDRIFLDSIMDADFIDEEELVHQSITYLIGGFHTTGNTLAWCLYFLATHEEVQEKLYQEFVDVLGDETITAQILPQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3T4</accession>
    <name>A0A6S7I3T4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Leucine-rich repeat-containing 28</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010677</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004084">
        <property type="protein sequence ID" value="CAB4001431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3T4"/>
    <dbReference type="OrthoDB" id="2021138at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050715">
        <property type="entry name" value="LRR-SigEffector_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45752:SF187">
        <property type="entry name" value="LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45752">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00364">
        <property type="entry name" value="LRR_BAC"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="1">
        <location>
            <begin position="79"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="381" mass="43477" checksum="11F39B9F84AC6E09" modified="2020-12-02" version="1">MAIKIFLAMDQYSGIIEQIKPAVKPNQLQYLLEIAKVENYTNLYINYENLEEIPREVLEITSIQGLFLKRNLLKSLPPDLWKLPLLKTLYLPSNQLTSLPEEIGKCVNLERLNIDSNCLKLFPKTIGELTKLKTLQASSNELEFIPPEIGQLKSLEILELMNNSIQCLPEELSKCTNLRSLFVDGNLIQELPRILLTLSRLQDLSLSRNYISHLPHELNRLCKLKSLVLDNNKDLTVIPASVFGIPHLQILGLHGSGSSNVGQSVVEILAEYSNIQEFRKVMGNVVTLLELCLRNAPDTKQQELLPKPLQTLLKTPKGCCHLCSQRYYVNAFFETCDSLYSQVLTLIQDKLYTQIKDSNCYFIFCFCSYNCFKEFVVAQSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I765</accession>
    <name>A0A6S7I765_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent DNA helicase PIF1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A027281</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007576">
        <property type="protein sequence ID" value="CAB4012613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I765"/>
    <dbReference type="OrthoDB" id="10057854at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048998">
        <property type="entry name" value="STPR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21107">
        <property type="entry name" value="STPRs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STPR" evidence="3">
        <location>
            <begin position="148"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="DUF6570" evidence="2">
        <location>
            <begin position="404"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="213"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4012613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="654" mass="74854" checksum="04789F8AB2F7C4F2" modified="2020-12-02" version="1">MQYGDPFAGDLFMANTALPYYSIYNALTNLFAETQLNYQHCLLTIGCNTVAIFKTSEGTFKVFDSHSRDLYGIPHPFGKCILASVDSIESLVIYFQSTVPPGNETPFEVKGVTVQLNCDITQISGLASSESEKEHVKQKCSELTESQKQSRLQNARKYKKAKQAAETETEKQTRLGNTREYQKAKRASETEDEKQTRLENASEYRKAKQASETQHEKQKTLKNARECQKAKRASETEHEKQTRLENAREYRKAKQASETEHEKQTRLENAREYRKGKQASETEHEKQTRLENAREYRKAKRAFETDHEKQTRIENAREYRKTKQASEKEKQTRLGNQDYLNKFDIEKDGSIHEQSWAKNNINKFSKSIEFFINQCTICQEAWPLNSTPRSPDCYICSRCARDTKSPRKFSLENAMIPSPVPTELQNLTQVEEMLIARALPIMRVYIKPGGQRGYSGHCVNLPQNVKELATSLPRYPKDLSVIIVKVKGKDNSFRDVAVRREKVHNALLWLVQNNPHYAKLQINEHALNSLPENGIPADLMTVETENEIISNDDVMSDLGPPTENPSEDIVYTNSTDMNSFLPVGEQQEQEIEAVRNQLSANEPMPWPTIESEPLNEYQISHLATMAFPTLFPDGKGDPTNQSILRNVPLQERIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I849</accession>
    <name>A0A6S7I849_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A081024</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007385">
        <property type="protein sequence ID" value="CAB4012110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I849"/>
    <dbReference type="OrthoDB" id="438545at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015179">
        <property type="term" value="F:L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950:SF652">
        <property type="entry name" value="TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="140"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="183"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="210"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="248"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="282"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="330"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="375"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="398"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="435"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="23"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4012110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="469" mass="51087" checksum="B2E20FE91D13F514" modified="2020-12-02" version="1">MGKNDKPKFMKSKVATSEESKISPRQPSQYGGLSSGSIQITDISDDHVLTSESSGENSRTQVHGLPLHRAVVVVANAALGAGMLNFPQAYDKSGGLVNALTVQTCLVLLIIGSFFILGYCGRLRRTANYQDTIRDFCGPIAQVICQINVVLYMFGCNVTHMILIGDQLTKVIDHSGWYFDRKIVITVVCCAFILPLCIPEKLKVVSYSSLIGGIGAVFVCCIVVSRYYTGGYSPGEGASNSSWSSTQIFAAVPVICFGFQCHVTAVAVYAELRRPTLTRFGLVTFLATLICTVLYSLTGSYGYLTFKHHVNSDVLVNYRHDDGVATSARVFIVIVVFSTFAICQFVGRSAIIGLWLKMRKLTAAQVEDYKNKRRVITSLIWFFSSLGIAVIVPNIAEAIAIVGALAAHFIFTFPGLCLIQLMLQDGRTMEAKRKIGLTIGITYVVIGMFLFGVTVTAALMTDIEGKYLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9U0</accession>
    <name>A0A6S7I9U0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bardet-Biedl syndrome 7 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049539</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008714">
        <property type="protein sequence ID" value="CAB4015434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9U0"/>
    <dbReference type="OrthoDB" id="414590at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034464">
        <property type="term" value="C:BBSome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036064">
        <property type="term" value="C:ciliary basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043005">
        <property type="term" value="C:neuron projection"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008104">
        <property type="term" value="P:intracellular protein localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056332">
        <property type="entry name" value="Beta-prop_BBS7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16074">
        <property type="entry name" value="BARDET-BIEDL SYNDROME 7 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16074:SF4">
        <property type="entry name" value="BARDET-BIEDL SYNDROME 7 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23743">
        <property type="entry name" value="Beta-prop_BBS7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BBS7 beta-propeller" evidence="1">
        <location>
            <begin position="22"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12468" checksum="CF6E32E12AA24AD4" modified="2020-12-02" version="1">MMQLNLNQVDYLQVDVTSPKSMKLLPSGAKRGIQKVAVADHSGVITCFGMKKGAVQMVFKTLPTSSISRLELGGIDGPSREKIFVASGAEIRGYNKKGKQFLGFDTNLTESIQSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IA82</accession>
    <name>A0A6S7IA82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004586">
        <property type="protein sequence ID" value="CAB4003281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IA82"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14279">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003892">
        <property type="entry name" value="CUE"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51140">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="21781" checksum="884B4B7418317E41" modified="2020-12-02" version="1">MQGTDLQTIQEILPSASASDIESALLYVNGDVAEAVQHLLPESYLYEAGLDPDELHSGRKIVIDGLIMYQVIDKRRLELDELAKVMESDSSNNVHMDNINRYQVSSFKMSNAKRVPVERLDFSIYKPSANQVAFSSTEERLPLWIKAMELRYKHGGSVFNNKITTQWEEHDDTDDDTKCDKVLINLTSHYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IFX7</accession>
    <name>A0A6S7IFX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107331191</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071498</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005091">
        <property type="protein sequence ID" value="CAB4005081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IFX7"/>
    <dbReference type="OrthoDB" id="5956617at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="367" mass="42045" checksum="D06EAFE4F5357D9E" modified="2020-12-02" version="1">MFDISLSTVRRRMREQGLSSTQPFASLSDEELDSIVSEIKLSHPQCGYRMMIGHLRSRGLKIQQDRVRTSLRRVDPEGTTVRWMAAIYRRKYSVKGPNSLWHIDGYHKLIRWKMVIHGGIDGFSRVPVYLSCSNNNRADTVFELFEEAVNCWGLPSRIRSDKGGENVEVSMFMLTHPHRGPGRGSMITGKSVHNQRIERLWRDIFYQVVCLFYNLFYHLESCDVLDPDNNAHIFALHYVFIPRINKCLAQFVQSWNAHVLSGTGGKTPMQMWIEGQLQMGSSQKGSVFEELTENEAEVFGIDWDGPLPTNLCNGADYEGNTIEVPSVDLPLTQEQFHQLQSQISPHEPGSNYGIEIYMRVLQFLSQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ILZ8</accession>
    <name>A0A6S7ILZ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038108</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010814">
        <property type="protein sequence ID" value="CAB4020164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ILZ8"/>
    <dbReference type="OrthoDB" id="5948924at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="428"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="552" mass="63220" checksum="0A2463B30C579931" modified="2020-12-02" version="1">MEVKIHIETEFPVPYKTTDLKINLENLESIGDMKKKLQPLLSVAACDMSVYHKTQVLLSPKLENRKKISNLYVREGDTFIVKFISVCKLHFLSKFLDDMRAFVKDVCETFSEGDKIKECIDWNDDTASAIDNCYRTVLRSLEECAHNEFVPWNCRSTIANRHYFAQEGGLELLARIYNFASKKRYPLGVSDRDLQIATYFNLKQNELEVFCLQCLWNFSEIKEDRRMVLRSIGLEPFIHSLLKVSPDADDGVEHVYINQASVGCLAQYVELPDIQQILAENHEVLSKLLWLTSNGSDSYQKEVAANTLFCCSNHPKAARKIIENQCYRSVLEKAQGLELAREDLSALPFTTAVAYFFCLFLANIQTLPEENLLPYDEIQQINQVLEAFLHVVTPSKIGRFQEEHSYVWISLIPFLQLALAGPSRPFGTENERLQTRPQVSVDPRSEIGTQPGEKSCDAEISNNREIGPYNFSPAEKIGLFCLCHLANTPENRELFKKEKLEDYLICVCWFAQRCPEVADLTPKLDGFERLEPPRLESIAKAYLSKCFGEKIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMV7</accession>
    <name>A0A6S7IMV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054324</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010191">
        <property type="protein sequence ID" value="CAB4018843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMV7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="29714" checksum="ED077EC081DB02A8" modified="2020-12-02" version="1">MTTKINKDKDRKSTMQFKRQRIQKHLSSSAQTARKEAKEGTTYQTGVGLNLNTDTNSTKTNLGKGIPEPEIQVNDEAMSSEQFKEIENIVPPYTPRPQVKKIQFDENHYYNFLVFDTETNSTEYVLPTHDIDFYASRVNNLEIRTIEGFMDFWFADSLTLFKQLVKCQCPQLKNADAFELSTRTIVDHSQLVTTNHAVKDMEYLDRRYQNMQTFNEIMFNPHTNNSFLTKNIAEKIAGASLTYKDLNEVYIKYGKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN31</accession>
    <name>A0A6S7IN31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045228</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005705">
        <property type="protein sequence ID" value="CAB4007122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN31"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9070" checksum="AEC70A91BDFF88EF" modified="2020-12-02" version="1">MAEEFKKGTVDKDGVTEEKTAFETGIRESQRERIPTLKGERIPTSAITMRLFNCIQSMAKTSEYSRSRSGRFSRCVCVTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J735</accession>
    <name>A0A6S7J735_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A063188</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013841">
        <property type="protein sequence ID" value="CAB4025821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J735"/>
    <dbReference type="OrthoDB" id="6125049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4025821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="437" mass="50359" checksum="B734289AEB003140" modified="2020-12-02" version="1" fragment="single">RANENNLRFNGDKCEFDKPSITFYGHVFSKQGISPCPKKIEAIKSLKPPANVSELRSYLGMITYCGRFIQDLATLTAPLRKLTKKDIKYEWKESQQHAFDTLQERLNEKTTLSYFDPSKDTKLIVDASPTGLAAILIQNTPSQNDETVVAYGSRALTEVEQRYSQTEREALAIVFGCEHFRLFLYGIHFTIYTDHKPLVSIFQNPNSHCPARLERWRLRLQSYNFQIHYCPGHDNPSDYISRHPMNTTSMTSQDSENSEYYIQFIAESTTPKAMTLQQIREATQNDPTLQHAAHIIQKNLWHTLDTTTFSKDTDIDIRELKLLRNVKDELTVSNDKNIILRDTRIVIPKSLRADAIHLAHVGHQGIVKTKSLMREKVWFPLIDSLVKSAIDSCIPCQATGRPKPPQPLLMREIPKENFDTVYIDFWVRYQVEKHSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7B8</accession>
    <name>A0A6S7J7B8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077203</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014199">
        <property type="protein sequence ID" value="CAB4026438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7B8"/>
    <dbReference type="OrthoDB" id="6417614at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12143" checksum="FDF1FCFCD4263521" modified="2020-12-02" version="1">MINLLRHKPYLELLGTSEPDQQQALLETASAEQVHCLCLCVENVMKRKYLMPKHVMKKLRPYKNEMLRLADGGKCGRRKKRILVQRGEGFLGLLLSPILESLAELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9A3</accession>
    <name>A0A6S7J9A3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Guanylate-binding 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074152</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014305">
        <property type="protein sequence ID" value="CAB4026614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9A3"/>
    <dbReference type="OrthoDB" id="2135133at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1000.10">
        <property type="entry name" value="Guanylate-binding protein, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003191">
        <property type="entry name" value="Guanylate-bd/ATL_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02841">
        <property type="entry name" value="GBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Guanylate-binding protein/Atlastin C-terminal" evidence="1">
        <location>
            <begin position="19"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17629" checksum="DB68C5859F91164C" modified="2020-12-02" version="1" fragment="single">LKCVTYDHDGRCCGGLLYTFLTHNREKSEKFCNDIIDGLIKKDLEPLLQNINHTSSFEVIHSVIKGIENKYWSRAIGPAAGDVFKMFHTSLEERKKRAMKVISQLADYNNEMEKERSEKLRMEMARREAEQEKERLERQKEAQAQQHLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9N0</accession>
    <name>A0A6S7J9N0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013731</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008044">
        <property type="protein sequence ID" value="CAB4013841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9N0"/>
    <dbReference type="OrthoDB" id="6244150at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="822" mass="93281" checksum="52A787768A8F76B7" modified="2020-12-02" version="1">MRVDFACLQQTHASSHKSIRKWFCNTGYKVVSSSVSNKSCGTAILVRDTHKVNKVIRDEEGRFVQVHLAADEHLLSFVSLYAPNKNPEHNRFFSSIPELIDLSRPTFICWDFNSVLDCALDRKRWSTYTGSQTAQYQESGPALQSLLSATQTYPLWRTLHPGQTAYSWTHGSGQFASRIDMVWAPTVFQDNIKECEYHPSFLGHHSYLLVKFELKQNFRGPGVWKFNSSLLDDPEYCDLVAFWQSMEGSDEYSSLLDWWDQGKYYLREVTRTFSKAKAEDGRSRKSSLTRQMHKLQRLFEAGDSSAFAQLCEVQEDLRTIALHEAQGAQTRARCQWAEEGESSSSYFFGLEAKHQARQKVSAIRDPVSGQVCHDPIDILGIWQRYYASLFTAQQCDAVAQDEMLTKVTRKLSQGERDACEGLLTEQESFSALSGMPHGKSPGSDGFPMEFYLRFWQSFGTDLVRVLNVAYETGQLSTSQHRGLIIILYKKNDRLETKNCRPISLLNVDYEIATRAISGRLLAVIGTVVGTDQTCGVPGRTISENLSFIRDLIEYVEREDLPVALLSLDQEKAFDRVDWGFLLCILDRFNFGPSFCNWIKLFHTDVESAVVINGWTSTFFKPSRGVCQGCPLSPLLYVLCIEILAVNIRTSPRVTGVYLPDSIEQYKCSGYADDTTIAVTTDESIKEVFNIYDTFEEASGAKLNRGKSKGMWLGAWKSLTDTPFGLSWVKVLPPLGASFSVGDYSIPTWEKPVAKLESRLSAWSGRSLSLQGKTTIINSLALSQIWHLCHVFAIPAWASKRIKKALWSFFFFFFFFFFFFFPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9T3</accession>
    <name>A0A6S7J9T3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcription factor Adf-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A003789</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015840">
        <property type="protein sequence ID" value="CAB4028945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9T3"/>
    <dbReference type="OrthoDB" id="5984255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004210">
        <property type="entry name" value="BESS_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006578">
        <property type="entry name" value="MADF-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039353">
        <property type="entry name" value="TF_Adf1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12243:SF67">
        <property type="entry name" value="COREPRESSOR OF PANGOLIN, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12243">
        <property type="entry name" value="MADF DOMAIN TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02944">
        <property type="entry name" value="BESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10545">
        <property type="entry name" value="MADF_DNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00595">
        <property type="entry name" value="MADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51031">
        <property type="entry name" value="BESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51029">
        <property type="entry name" value="MADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="145"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="215"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="37997" checksum="3DBE1C03467C694C" modified="2020-12-02" version="1">MEIQHENGGEEFSRERLMEDIRQYPCIYDKYDKDYPDKIAKTNAWAAIAAKYGISPIDADKKYKTMRSSYTRYLKKKRNTPPGAKPPPLPVAFVNLDWLASHIDHKETAVKYTANGGKDGYYSDYLTDAEDAYHSSYDEIMREENNSSDMIEIPNSSVTSRPRESLKPEPAASHGLHVRESLIKPESASNQVLHVKDNLRPDPLPSPILHVSTSEYQSSRAATPPITNHTNQASSTQTPQSNGAKSITMYYNRQKDSHNDAVLNLIPLESVKPASAAPTPPPSESVGKRKRIEYDDEDELFLLSLVPTLKRLGPRNKTIAKMRFQQVLFDLEFPASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JB32</accession>
    <name>A0A6S7JB32_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">26S proteasome non-ATPase regulatory subunit 5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A079393</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the proteasome subunit S5B/HSM3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008266">
        <property type="protein sequence ID" value="CAB4014352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JB32"/>
    <dbReference type="OrthoDB" id="10250600at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043248">
        <property type="term" value="P:proteasome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019538">
        <property type="entry name" value="PSMD5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13554:SF10">
        <property type="entry name" value="26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13554">
        <property type="entry name" value="26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10508">
        <property type="entry name" value="Proteasom_PSMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0647">Proteasome</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="502" mass="56870" checksum="C84F518796FCB175" modified="2020-12-02" version="1">MEAKIAQHVQILSSSTSGENVLKSLQDLNIFVDSRNLNSEQLLMLIPPSLLFRRLALNHTSEIGYCTSLLKKLLNYMKPEMIITEYEVEAMQGVNHPSVEVRELCLHQVERSAQTNSGVLKIIQNLDLVNFIIRNLGHSHMGCATVASNIVLCVSRHGDGLALLLDSHHHAEFLELMRKSHTVCFRVYELFVKMFEANQNAYEQFKPIFTNLADEINSDDVLIQMNCIELLTDLVNINEAAYRFPEEAGVNQKLYSILMSVESNPLAALLVPAIIKFFGFLSITNPVFILDKYPQFYEFIFNCITSNDPSLLAVAVDTIGAIGLSNEGLAVLFQNESRRNIMLVIGRCLQVADEQMKVHFLDCLASLFASGDTSDKNTLDLIHSLYQKLDANPLQMLFQVLKQPFNSVRKSCFKTFYNLVSYQWMLADINNIPGFFEYLLDRRTENEKECQELKYEVIKKMSLSPAVSNVFDKPSVLKLKQFVRDGAFYVGSEVSVSVDETQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCE0</accession>
    <name>A0A6S7JCE0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063202</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016455">
        <property type="protein sequence ID" value="CAB4029846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCE0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="120"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="19969" checksum="377753E346F3E4C7" modified="2020-12-02" version="1">MKESFNPKDRAITRVRGQIEILLSNVENAQTVEIQLQRYDDAWRKFEDAHNGYLSLISPHSLVFSDAVQQYNQLYTEKAIFSNRVSKYLQNCEENPINHVSPNVTLSTIQKEHVYAESVTSDRSSVSKASSQSSRSSTQEKRVQAAKAKLALRLAEAERHRVLEGEFRLEDIER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGG7</accession>
    <name>A0A6S7JGG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006985</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015250">
        <property type="protein sequence ID" value="CAB4028110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGG7"/>
    <dbReference type="OrthoDB" id="5988423at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="500" mass="57686" checksum="EF2336191160887D" modified="2020-12-02" version="1" fragment="single">MSLLDTTLKDLEEKSTEVVALQREINDINAALKEEKWYSSALKEEVDKLEAEKQERLEAFQNLEQEKHKCTKEFEEKLKLSEQEKTTEVNELKQNLVHALEAKSGSQEEQLSLVQKSSEMNSELVALQSKLKDEEQTRISLEKSCEGMKEELEDKSKTIGDLETQLGERPTAEHVSSLQTHINSLEEQLKNTKLEKESERLELSEKYENTVETTKRLEAKVNELVIEKSSKVEQLQSLQTALEAASGYRKQVEENQGEKQQLVLSMQHELDQTKVAVKEKEQFVEFLQKQLEETKENYQIELNAKDEAKQEVRRLQNLSEEQERQSITRESKLVELEKSLDQSKADISRMEEERNDLIQKIEAGEGISTAINQLNQEKDQLEERLNDCEKQMECQAKENAAKIEELHKRNNEITEELEQSRLDENKLSVSLKEKSDELQNISGNLEETKSELQKKSEVLVAVEASKVAEKNVLEEQIISVQEALQQKIAEHSALQQEHTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JI62</accession>
    <name>A0A6S7JI62_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020753</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016463">
        <property type="protein sequence ID" value="CAB4029864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JI62"/>
    <dbReference type="OrthoDB" id="5988746at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24373" checksum="00D0450542E0D0C0" modified="2020-12-02" version="1">MEEQPGTDEQCRQNKESEPEIVGFHLDNSFNTFDLEPAELDKDNTSSIMPDSSANSEKHGCTEVSIDSACSVGNELETTLRHPTTVNKDDYSGINCKVQAENSVGCVTKLGKAIEFVMGKTNEVLQFDKARQKYKQFPADKLYYDAFMRKVAVMETRVSKQQRETRVKLSQWERDFFINNNCKVATEKDIAACSHAQLLRNKLKYAKAILSKLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLK8</accession>
    <name>A0A6S7JLK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Zinc finger BED domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A036481</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007319">
        <property type="protein sequence ID" value="CAB4011938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLK8"/>
    <dbReference type="OrthoDB" id="1607513at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003656">
        <property type="entry name" value="Znf_BED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052035">
        <property type="entry name" value="ZnF_BED_domain_contain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481:SF9">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02892">
        <property type="entry name" value="zf-BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00614">
        <property type="entry name" value="ZnF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140996">
        <property type="entry name" value="Hermes dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50808">
        <property type="entry name" value="ZF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="112"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="112"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4011938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="645" mass="73458" checksum="BA7CE9910A9526E5" modified="2020-12-02" version="1">MSKNTYARLSFQYGNIKSEHNVLRAIVVETIVNSIEVLEILEEGNSADADANYAAVDSKRQRSAVWDCFRKLTDAANTTGASKCSICSENVKHGSNTSNLFKHLKLKHQEQYKEAEKKRKLDEENNAKKQSSKTKKQTTIIDTMLHGKYSSTCTRRRKIDDAVLKMITSDLQPLSVVEDAGFQSLLHLLDPRYKLPSRRTMTRMLPDMYSKRVKEIKQELEQISHVALTSDLWTSRATESYLTVTCHYLTSSWVLQSRVLETFAFKSSHTAENIAASFLRVAKSWEISEKVVAMVTDNAANIVAAVQITGWKHVKCFAHTLNLVVSEAIKTDLINGIRKRCRQIVTFFHQSTKATDKLKEIQAQAQVPDHKLVQEVDTRWNSTFYMFERIIEQHEAVMTTLCLSNCNDLCFSISDVEVLKAAVAILKPFERVTTEISADQYISISKAIPLAKSLQHLTSASIHKDTTLASEMSAQLRRRFTGVENVHLLAHSTLLDPHMKKLAFSSFVAARQGEQWIVEEMKQHVPAVPTDEQTEVTEQQRDVGLWDLFDKKVADRQLRATSTLTIERESTRFFDDKLLARDKDPLTWWKENEKDYKILSNLAKKYLCIPATSVPAERLFSKAGELVSIRQSKNVDMLLFLNKNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXE6</accession>
    <name>A0A6S7JXE6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000174</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011074">
        <property type="protein sequence ID" value="CAB4020681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXE6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15143" checksum="157EC9710532DF70" modified="2020-12-02" version="1">MIGFEISLIKTSVAKDLKLKGKDVVVTLIKVGCQEEELHIKVYRVTVQSLENQSCHTIEAIAIPSDNDEISFVKIDELTTKFGLSRGDIGRGTGDTDPYWRNEKSRKSCGTPFPSRLGDPWCYSNSKPVNNLKPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZM6</accession>
    <name>A0A6S7JZM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A041604</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011352">
        <property type="protein sequence ID" value="CAB4021281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZM6"/>
    <dbReference type="OrthoDB" id="10056831at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054465">
        <property type="entry name" value="Integrase_p58-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22938">
        <property type="entry name" value="Integrase_p58_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="152"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="439"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="527"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="454"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="468"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="536"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="548"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4021281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="586" mass="68067" checksum="784A748D5314AAE5" modified="2020-12-02" version="1" fragment="single">PGRSHGNADGVSRIPQDTREVQSGHVCNASNGNDETSPWCLRWTAKELSLHQHEDPEICRAIGWVKDGKRPPKEDITRMGPLMGKLWSKFDQLTLVDGLLYRIFENDNEVKRSDKEKILLERLAVRCRDALQELSDMRRTKWTVEKTMVLDQPGYPMERVAMDIIGPLPKTPDGNRYILVVVDYFTKWPEAYAIPNQEARIIAQKLVDEWICRYGVMQRLHTDQGRNFESAVFKEIIDILGIKKTRTTPYHPQSDGLVERMNRTLKDILSKLVNERQDDWDRCLPQALLAYRSTVQTSTGFSPHFLMFGRETRIPVDLMTPEPPQAEVPLTTSEYAEKLRKRFERTYELTRVNTKKSSERYKDYYDAKAKDTTCNVGEKVWLYVPFVKKGKNLKLSRPWRGPYTIVKKISDVVYRIEKNANKRNRLVVHYNRLKPCFERPLKSLPNRPPNETKLQSKETPETRKENVENCSGQTPQTEPPTNGGNDEDEWTVRYFRRNLRQSRPSRAINGEEHGQNLPDEVQEDVQHLPDELQQDGPLSSMEQNNQRDGSDETLREPVEGNEGQSQAPPERPARTRKNPAWLRDYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7P1</accession>
    <name>A0A6S7K7P1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Slit homolog 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063521</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023577">
        <property type="protein sequence ID" value="CAB4037890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7P1"/>
    <dbReference type="OrthoDB" id="694479at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050333">
        <property type="entry name" value="SLRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45712">
        <property type="entry name" value="AGAP008170-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45712:SF22">
        <property type="entry name" value="INSULIN-LIKE GROWTH FACTOR-BINDING PROTEIN COMPLEX ACID LABILE SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13537" checksum="E309A95FD3F9D246" modified="2020-12-02" version="1" fragment="single">DLGKNNLSSLPNLNIRRFKLEGLNLDENNFTVVPTTVLSKMKNLRILYMMDNNIQEINESWIHENLRTLELDRNEIKKFPRLMMPRLNKLSLRDNKIEEIPENALKNTKMLEML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KA10</accession>
    <name>A0A6S7KA10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022794</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029679">
        <property type="protein sequence ID" value="CAB4042205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KA10"/>
    <dbReference type="OrthoDB" id="5972337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="265" mass="30367" checksum="6A428C70C510D705" modified="2020-12-02" version="1">MDKEIKNKAKNARRGAKGSLTRAMNVTNELIEASRSKSEVKQAFEELRRAHEGLVMKHEEFTMLLDDEEFEEAEKWMQVCASEYVAFTMRYHDYIKKIDEDKSKQNVSDSVVGESSEENNEESNDSQGSNNLIEQSTVSNENNHPSTMQNPEMMQHSPSSAKPFTVKHEKAKLPVFTGDVRQYFIFKSDFKHAVEAQYSERDTLTVLRSCLSSEPAKLIEGISSDLNAAWKYLDQNYGDPRIVSDTITLDLERFRSIQPGEDHRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGJ6</accession>
    <name>A0A6S7KGJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A070696</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031592">
        <property type="protein sequence ID" value="CAB4043138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGJ6"/>
    <dbReference type="OrthoDB" id="5982777at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050637">
        <property type="entry name" value="NLRP_innate_immun_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45690">
        <property type="entry name" value="NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45690:SF19">
        <property type="entry name" value="NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50837">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4043138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="614" mass="70600" checksum="E62842ACCC2D8E6D" modified="2020-12-02" version="1">MEVPETSIRLENIDDLFYPNRDTMKEEFPRSILVIGRPGIGKTVLTEKILRNWANGIDEYYYDTVAFSFKFRWLNENFNKLANISLKTFLRFGTRLNEETFESIYEEIAKEPEKAILIFDGLDEYHGDLISCLDQSRLIPNDPNTDTSAINLFIKLVLGDLLKGATVVVTSRPTADGFYSRLEFDRNVEIIGFTSDKIEEYVSRFCDNNNTSDLKTKIWNHIKTSSELLNLCYIPINCFIVCVTLSGRLIDSDQRNETGALPTTLTELYQTAIDHFEKHNHRSADRNSTAHEALKKLQRLAFLGMESGQLIFDQVLFDVKMKTSGLLNSLSNPIFPLQTQFCFIHLTIQEFLAARHVTETFVPLQIKKFISDHVESGKWHLIIHFIAGLLSKKRFHREYKDCIFAIGESLQVTHGKIELNYNEVFVMKCLREVDDEEIVKEVCETTTLNDVVKLHNGLYHVSPSDWAAVSYICKHMKNLANLVLSTTVDEYYLLEVLQLLRKRCLNQLQLSGGRFDTVIDVERVFSALMELNCTLDHKHTKLTSLTLHDFGMTETGLLMMCRFFRNGYASQLTCLDLNCIGIRTHEISELREVLNNGHCSNLTYLDIGNELIRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJF3</accession>
    <name>A0A6S7KJF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076606</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029751">
        <property type="protein sequence ID" value="CAB4042240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJF3"/>
    <dbReference type="OrthoDB" id="7698392at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24268" checksum="821F63463B4F3F4A" modified="2020-12-02" version="1">MKPVLFYLRKLAHQSSLYIDDSLRTGQTYDDCAANVIDTTQLIDNLGFIAHPDQSVFIPTHELDYLGFTLNSKTMQVTITPGKKLNLIETCKELLTKEYPTIREVARHILSGNHAMIMVDNTTAESIIREMGTSLCTGSARLNHLCDNASATESPRTSSLRDPSDPILANTDMVAESNEHDCPTANCLTKKQGTIIPPQPTQQNIWNMNSLKLPKNCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KU97</accession>
    <name>A0A6S7KU97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034075</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041154">
        <property type="protein sequence ID" value="CAB4045690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KU97"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="68" mass="7750" checksum="2C0B5D6DC9A11BBB" modified="2020-12-02" version="1" fragment="single">YLIGTGAYDWYPDPGSERQQQASRSPRQFMLQLIVTLLARSYIGSFDAIGPQWFRARADNARAPVLNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LIL1</accession>
    <name>A0A6S7LIL1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carnitine O-palmitoyltransferase 2, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083616</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the carnitine/choline acetyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023280">
        <property type="protein sequence ID" value="CAB4037613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LIL1"/>
    <dbReference type="OrthoDB" id="240216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004095">
        <property type="term" value="F:carnitine O-palmitoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="entry name" value="Chloramphenicol acetyltransferase-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000542">
        <property type="entry name" value="Carn_acyl_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039551">
        <property type="entry name" value="Cho/carn_acyl_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22589">
        <property type="entry name" value="CARNITINE O-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22589:SF16">
        <property type="entry name" value="CARNITINE O-PALMITOYLTRANSFERASE 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00755">
        <property type="entry name" value="Carn_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52777">
        <property type="entry name" value="CoA-dependent acyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16458" checksum="019CF3512C8760BC" modified="2020-12-02" version="1" fragment="single">MGYYRQHGKFVGSYESCSTAAFKHGRTETVRPASLATVACSQAFDRTHKAGVDEMTSLIQKASEYHNQLIKEAAMGFGVNGYVFKFERRNLNPCKRNKSISRLCRSLVMKFHNNIIKNRPFVRNLSSLHTWFPTRKIVNEGPQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LP45</accession>
    <name>A0A6S7LP45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021830">
        <property type="protein sequence ID" value="CAB4036249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LP45"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6265" checksum="150E4A2DDD4B5DEC" modified="2020-12-02" version="1" fragment="single">MPRASQKRSQAASQAEESQGSQKRGRKRRDPTDDGEEGGTQSSQAKNALSKSEMDRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LT64</accession>
    <name>A0A6S7LT64_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029515">
        <property type="protein sequence ID" value="CAB4042129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LT64"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="33668" checksum="31C1F8C50B04858E" modified="2020-12-02" version="1">MAETPMSENITGKDTDASKRLFCDAGLTPTKNQNKKSREEDSSGRTLPVQEIFRVKDGSSIEIDQAMIAMQNYIGRTIKQNQLNKAIIEAFGNTVTRKRIKVGSRIGGEDKRAVVPMYVNLQKIDCLSQNSATTPCRCSTLEKENEMLKEQIAHMKERITDLEKENATNVKDSEKIEKEIKILAKLSKLDLKGSLEKLDELDKMIPSTVFSSIASNVKEQCPVISSLLETLAVGQHTSRNCGKNEDYKFKCALQVLSAINEIRSQKSDSDLSILFGLLLIANGAGKGIIQFLHPFGLTKSYSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D7P7</accession>
    <name>A0A7D9D7P7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061863</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000020">
        <property type="protein sequence ID" value="CAB3976927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D7P7"/>
    <dbReference type="OrthoDB" id="10068942at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="222"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="535" mass="60510" checksum="CE3392AE538B354A" modified="2020-12-02" version="1">MDLFKQAQKEYFSRKEQQLDAEACEHQLDIEACKHQFINLSQTNVSSCRRDGGSQFVCRLRQKALTCEFADVDETIGDQLIEKCKNAKLRRKFLEKINASLKDMQDRYARAHEAVEIQMRSLEQSDSQQSEDGQINAVGQFGKKNQRGNKDGVHGNNTSGRYGRGTFGQKTGTDQRCFNCNRVCHFARDTICPARDQRCNECGIRGHFSACCRKKNSKIPQGWNQEEDESRKKKVYQVDDEENPRTREDYAFVVGENRTGAGEITLMIGGIQLDGVLINSGASCYLVDYETWTNWKNNNIDCQSTKSEKKLFDYGQKEPIEVAGTFVAEIVCKVSGEKSIEEFTVIKGAGKPLLGKSTTEKLKVLHVGPFYGAQVCSIATEGSDTDIREEYADTFVGVGKLKNYQLKLHINKDVKPVAQGVRRLPFGQRGKVDEKLDDLLAKDIIEEVPNSPTEWVSPLVVVPKPDGDVRVCIDMRKANEAIARERHPIPTNEKILYDLNSATVFSKLDLKWGFYQIELEEQSRDITTFVTHRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DI59</accession>
    <name>A0A7D9DI59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001004">
        <property type="protein sequence ID" value="CAB3986356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DI59"/>
    <dbReference type="OrthoDB" id="5983996at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="213"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="213"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="241"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="269"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="31962" checksum="41C2001C69546D10" modified="2020-12-02" version="1">MVCDEVILRGNRIVLPQSLHNRAIELAHLGHQGIVKTKQLLRKKVWFPDIDKMVEANVKMCLPCQASTQGTSSPPEPLKPSPLPEKAWTNVAVHFVGPFPTGEYLIVVIDEYSRYREVEILTTKSTKAANPKLDSIFSRQGIPEILKSDNGPPFNGENTVSYITPYWPRANGEAECFMKTIEKAIRAATIEGRNWKKAMYIFLRQYRATSHSTISVSPSEALNNRKLKTHLPDSPSTPSNSEKDEEIRSRDEKNKSTMKSYSDKRNRAKPNNITLGDTVLNRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIP2</accession>
    <name>A0A7D9DIP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038794</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001032">
        <property type="protein sequence ID" value="CAB3986550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIP2"/>
    <dbReference type="OrthoDB" id="6286413at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="26168" checksum="7F183335BE8C32ED" modified="2020-12-02" version="1" fragment="single">FVLRAGSRCARNSSICQRIKTNAANILPQVSRGTTALLVVAVKVHGADGREITTYALLDQASEASFIHANLAKKLNLKGSRENQASHGSRLLARDVIVTDSLDVQLKAAPTRNDVRAWKHLSDIDFPEVELEDILVLIGADNPEVFITHEIRAGGVEEPWGFKYKLRWALMGPTNRPQTSQVDVHLLQRSNADVEDIAFKDDVNRFFYEDDLGVVTSIKKAMSVEDKKAEKMMEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DK40</accession>
    <name>A0A7D9DK40_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Major vault protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A032726</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Required for normal vault structure. Vaults are multi-subunit structures that may act as scaffolds for proteins involved in signal transduction. Vaults may also play a role in nucleo-cytoplasmic transport.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">The vault ribonucleoprotein particle is a huge (400 A x 670 A) cage structure of 12.9 MDa. It consists of a dimer of half-vaults, with each half-vault comprising 39 identical major vault protein (MVP) chains, PARP4 and one or more vault RNAs (vRNAs).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001235">
        <property type="protein sequence ID" value="CAB3987791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DK40"/>
    <dbReference type="OrthoDB" id="6125719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08825">
        <property type="entry name" value="MVP_shoulder"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.550:FF:000005">
        <property type="entry name" value="Major vault protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.560:FF:000002">
        <property type="entry name" value="Major vault protein-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.570:FF:000002">
        <property type="entry name" value="Major vault protein-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.550:FF:000001">
        <property type="entry name" value="major vault protein-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.560:FF:000001">
        <property type="entry name" value="major vault protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.570:FF:000001">
        <property type="entry name" value="major vault protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.479.30:FF:000010">
        <property type="entry name" value="major vault protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.560">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.570">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.720">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="entry name" value="Band 7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.550">
        <property type="entry name" value="Major Vault Protein repeat"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039059">
        <property type="entry name" value="MVP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041139">
        <property type="entry name" value="MVP_rep_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043023">
        <property type="entry name" value="MVP_rep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021870">
        <property type="entry name" value="MVP_shoulder"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041134">
        <property type="entry name" value="Vault_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043179">
        <property type="entry name" value="Vault_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040989">
        <property type="entry name" value="Vault_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041136">
        <property type="entry name" value="Vault_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002499">
        <property type="entry name" value="Vault_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14165">
        <property type="entry name" value="MAJOR VAULT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14165:SF3">
        <property type="entry name" value="MAJOR VAULT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11978">
        <property type="entry name" value="MVP_shoulder"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01505">
        <property type="entry name" value="Vault"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17794">
        <property type="entry name" value="Vault_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17795">
        <property type="entry name" value="Vault_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17796">
        <property type="entry name" value="Vault_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51224">
        <property type="entry name" value="MVP"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="7 10" id="KW-0687">Ribonucleoprotein</keyword>
    <feature type="domain" description="Major vault protein repeat" evidence="13">
        <location>
            <begin position="60"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="repeat" description="MVP" evidence="10">
        <location>
            <begin position="66"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="Major vault protein repeat" evidence="11">
        <location>
            <begin position="124"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="repeat" description="MVP" evidence="10">
        <location>
            <begin position="127"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Major vault protein repeat" evidence="11">
        <location>
            <begin position="175"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="repeat" description="MVP" evidence="10">
        <location>
            <begin position="179"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="domain" description="Major vault protein repeat" evidence="11">
        <location>
            <begin position="228"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="repeat" description="MVP" evidence="10">
        <location>
            <begin position="232"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="Major vault protein repeat" evidence="13">
        <location>
            <begin position="282"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="repeat" description="MVP" evidence="10">
        <location>
            <begin position="288"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="Major vault protein repeat" evidence="11">
        <location>
            <begin position="333"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="repeat" description="MVP" evidence="10">
        <location>
            <begin position="337"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="Major vault protein repeat" evidence="15">
        <location>
            <begin position="391"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="repeat" description="MVP" evidence="10">
        <location>
            <begin position="396"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="domain" description="Major vault protein repeat" evidence="14">
        <location>
            <begin position="466"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="domain" description="Major vault protein shoulder" evidence="12">
        <location>
            <begin position="528"/>
            <end position="645"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF11978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF17794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF17795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF17796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3987791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="863" mass="96723" checksum="D980EFCA15DEBFBE" modified="2020-12-02" version="1">MSRTRQSPPGGSEEGSIFRIPPYYYLHVFDQTTNVTKVELGPKTFIRQDNEKVVFGPEKMITIPPRHYCVIENPAVKDDEEKPVYDDNGQIKLLHADQEVRLTQDPFPLYPGEVVKENVAALKIVMANSALRLRAVLDIEDKDEKRVAGDEWLFEGPGTYIPRKEVKVEENIQATVIQPGQAIRLRARKETRDRDGTLRVTGEEWLVKKTGAYLPGAYEEVIDTVGAYVLNDKKALHMRALRTFTDEEEETRKNGEEWLITSKDTEAHIPNVYEEVMGIVDITTLTNRQYCVILDPVGEDGKPQLGQKKLIKGERSFFLHPGEKLENGIQDIYILGEDEGLILKANETFKDTSEEDEKKVSLRRPGDRWMIRGPCEYVPPVEVEVVAQRKAIPLDENEGIYVRDIKSGKVRAVCGQTYMLNQDEELWEKILPPAVEDLLSQGRDPLADRGTRGTSGERIKRDKTRVISYRVPHNASVQIYDYKEKRARVVFGPELVMLGPDEQFTQLSLSGGKPKRPNVIKALCLLLGPDFCTDIITVETADHARLSLQLAYNWHFDVRDKSEKESEKLFSVPDFVGDACKAIASRIRGAVAGVQFDDFHKNSAKIIRTSVFGLDENHKIRNSFSFPANNLNITSVDIQSVEPVDQRTRDALMKSVQLAIEITTNSQEATARHEAERIEQEARGRLERQKINDEAEAEKSRRDLLELQAQSAAVESTGQAKAEAQSRAESARIAGEADVSQAKLKAEATRIQADSELERTTKVVESEIKNNKIRDEMEISKAKQMSGIEIEKFENMVKAIGPDTIKAIANAGPQMQVKLLQSLGLKSTLITDGSSPINLFNTAHGLIGGQLPSISGDNESTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DK78</accession>
    <name>A0A7D9DK78_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A029170</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020001052">
        <property type="protein sequence ID" value="CAB3986663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DK78"/>
    <dbReference type="OrthoDB" id="5977244at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346">
        <property type="entry name" value="MAP/MICROTUBULE AFFINITY-REGULATING KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346:SF94">
        <property type="entry name" value="NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11" id="KW-0464">Manganese</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="15">
        <location>
            <begin position="1"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="222"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="14">
        <location>
            <begin position="237"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3986663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29117" checksum="A458DD2545881E95" modified="2020-12-02" version="1">MILEYCVGELQEMLESIESHKFPIWQAHGANIKPSNLLLATDGTLKISDFGVAERLDMFAPDDTCRTSQGSPAFQPPEVANGLESFSGFKLDIWAAGVTLYNITTGLYPFEADNIYKLFECIGKGEFTMPSDVDSNLENLLRGMLKRDSSERLSLQDIRQHNWVRKKHPALGEYVPMPPLQDGDPYRSMSVVPYLEDLHCPESGSLIDEDDTVTDTLCVPDAEEPHDVESPESTQVLKKKKSKKKGSFVSLLPHSCIHGNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DL27</accession>
    <name>A0A7D9DL27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022552</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001335">
        <property type="protein sequence ID" value="CAB3988511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DL27"/>
    <dbReference type="OrthoDB" id="8923991at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd19757">
        <property type="entry name" value="Bbox1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="18033" checksum="3BBE93D27B1D9708" modified="2020-12-02" version="1">MVFYILSDKNANKELVHPEFQDENPRRDLEAIIEECQDVVGQTENSPSAWQKRMTNLDENWQNVRETIFESAVCSFAPPSSSIPCCKCGTSEAMLRCCECGINRFLCVNCDDEVHLSLPFHNREVWFNGYFQHILPTETISEEKKIIHVGMCYYSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLG9</accession>
    <name>A0A7D9DLG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042571</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001279">
        <property type="protein sequence ID" value="CAB3988095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DLG9"/>
    <dbReference type="OrthoDB" id="6089225at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="626" mass="70529" checksum="57CB5C2C7375DEC3" modified="2020-12-02" version="1" fragment="single">WKNPWHPGLHSSSFDLITFAVPMEIEGLRQEHKQCINSGTPKERGVLEFTNLPPPKERGVLVSRLAMTDETSSGATVNVLSKRTLAGCFRKPIEKKLVKTNTTLVMYNGSEVKPIGKTRIQVINPKNNKKYGVEFMVVEENCKSILGAKASQLMNLLAVNKENIFTTESNVKDVPKFITKQHLIEEYPAVFQGQGTLPGTLHLEIDESISPVQLPTRRIPLAVKDKLKAELNRLGDVNVIAPVDTPTTWISAIVVTVKKNGDIRLCIDPKPLNKALKRNHYPSPTIDDILPDLAQARCFSVLDAKNGFWHVRLDEPSSFATTFGTPWGRYRWLRMPFGISPAPEEFQRRVNDILLGLPGIKVIADDILVYGSGATDEEAYLDHDKNLRGLMERCREKGLKLNPDKIQLQLKEVSYMGHRITSNGLKIDPEKTKKFAPKLAEITTPLRDLIKKGNEFVWEEHVHGKALDEIRQILSEPSVLRFFNPNVMAVLQCDASMNGLGACLLQNNQPVAYASRSLTPTEVQYAQIEKEMLAIVFGMERFESYLYGRNVKVESDHKPLESILKKSLLSAPKRLQTRRARTPENSAIYLSVKKFKMSAKNIKIAANGRSYDFVNKLRLGVIRFKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DWW4</accession>
    <name>A0A7D9DWW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002244">
        <property type="protein sequence ID" value="CAB3993352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DWW4"/>
    <dbReference type="OrthoDB" id="10057240at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47272">
        <property type="entry name" value="DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47272:SF1">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 3-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19370" checksum="4A4FB8096A314497" modified="2020-12-02" version="1">MPRKNSKVCFEDVFESILSRNDCEVENLSSDEEVDDTDYVASNNHDGSDGDSSDDNSDDNDSDDVESGENGDSADPATQQKQKKTFRWRKKDMPPSDGSFDLAKDDIEEIKSPLEYFRQFWPDEINNLVVEQTNLYSTQKTGTSINTNNKETEQLIGMHLKMGISCTGHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DYS9</accession>
    <name>A0A7D9DYS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010721</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003067">
        <property type="protein sequence ID" value="CAB3997295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DYS9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="17304" checksum="68452A155C4EF4B4" modified="2020-12-02" version="1">MPPKNPENTIASKNIVQAKELFDQQHPKRKRIQIQPQIYDVPRGVGRPSRFDTLSKLANESCGKSKIYSQDFILLALDGTEKKRKTVLTKSTTTITCSSTNDYVMYEYITDCRRKALDIIKEQKEKLEKINILEKRLMDFDSDYEPNTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DZ55</accession>
    <name>A0A7D9DZ55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A069934</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002806">
        <property type="protein sequence ID" value="CAB3996138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DZ55"/>
    <dbReference type="OrthoDB" id="6159421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3996138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="17320" checksum="CF344B5F12DA3AAA" modified="2020-12-02" version="1">MADASDSVSGSEDEFNSPESPGPSTLKQSSKSTRKDSGAANPVTEKTMRAEVKVATMLVQHNIPLAVADELTPLFQDIFSDSEIAKNYSSRRTKTACIINGAVAPFFQQSLVEHVKNNPFSIAINGSSDNAVEKMNPLTVRIFYVSVYILSFIPFMLLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E131</accession>
    <name>A0A7D9E131_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Deleted in malignant brain tumors 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A004128</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003243">
        <property type="protein sequence ID" value="CAB3997994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E131"/>
    <dbReference type="OrthoDB" id="5986976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000013">
        <property type="entry name" value="Membrane frizzled-related protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251:SF37">
        <property type="entry name" value="CUB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251">
        <property type="entry name" value="OVOCHYMASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3997994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18230" checksum="C5EEC05B32E5D0F1" modified="2020-12-02" version="1" fragment="single">TCRSISTLRLPSGNIKGPGYPGRYPNNTAYCWRIYVPRYYVVKLNINYLNMEACSGCTCDSVEVFDGPSERSKSLGKYCARSWRVTSSGQYLFVKFTSDSEVTGDAFSASYYKAVRGSDSGSGNNNNNNYNNVNSNNNSGAGLCKFQVSSYIQPISYPEQCLWAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3W2</accession>
    <name>A0A7D9E3W2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070573</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003991">
        <property type="protein sequence ID" value="CAB4001053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3W2"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="29170" checksum="5A638D3F7EDF482F" modified="2020-12-02" version="1">MEGFTLEPLLADIGDQIDPYQFAMKGCSTTQALVFLLHNVLETLDRGGSLARVFFADFSKGFDLVDHGVLVAELEKLNVRPAVVGWIRAFLTRRKKCVRIRDKMSSFKCLNGGIPQGTKLGPILFAVLVNSLLRDWNFRIKFVDDLTTIEFIPRCSRSVTPLLVNDIYDYASTRGIRLNSKKCKEMIINFLQYKLPFQDALQVGGNTIERVSSYKLLGVICITISHGIYTVIIVLRKLIRESIYCVYYGQQGLGFNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E6B7</accession>
    <name>A0A7D9E6B7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041571</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004461">
        <property type="protein sequence ID" value="CAB4002828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E6B7"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="461" mass="53060" checksum="7C926BBB023995DB" modified="2020-12-02" version="1">MTVGRGVLQGDCLSPLLFNMCFNNFIQHIKAEKYRQFGFSFKLLNPIHWLQFADDAAVITGQESENQHLLNRFSIWCQWSDMIIRVDKCSTFGIKKAVTKSVQYLPKLLISNQLIPKITIGESFQYLGRYFDFHMSNDNHKTELVTLLNELMSDVDSKPLQPKNKLLLYSRYVLSKLAWHLTVATLSKTWVTENIDSIANKYIRRWLEVPISGTLSTVFLTNNKFGLSIYPPSVKFIQCQTVLRKALKSSPNESTNDLWRATSNHTNIQYDAYNSTKEVLKDFRSGHENKLLNQLTSQGSFFCSVTKFALPQLSKLQTVDGSTLYADLNGFKSPSILTGDTHRPDLLLSCSNGSLYVVELTTGYETNLKNNVKRKKDKYRELLRQLGKNFNQVKFINLSISSLGIFAEECYTFLDMLDSIGLDKNHQMYCVRKMMTIAIRTTYYIFCCRNKEWENPDLLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAT4</accession>
    <name>A0A7D9EAT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005306">
        <property type="protein sequence ID" value="CAB4005756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAT4"/>
    <dbReference type="OrthoDB" id="5989789at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="142"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="27075" checksum="6D5E68F6C7E41A70" modified="2020-12-02" version="1">MAQTDVPADMKDFMEKYLSQMCRQLTSVVDDRFTLMKRELSAETSATLDAISSKKARLDKHVFKSKGNEQQYQHQLGLLDTFDGVATSLENHDTDKAMSLLQEGKAAIHGRIKLIKLADKSEHGWQTVAEYVTNELAENSDDEKRIDRAERNAEKKAKKKAKSTSAAKARQPFTFSKAPAVPNSLRPSFTRPPFPSYNMPLGNQIDPCYKLSIVFELIGGSHCCTFHNCFGLSVFYSIELD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBK6</accession>
    <name>A0A7D9EBK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005164">
        <property type="protein sequence ID" value="CAB4005334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBK6"/>
    <dbReference type="OrthoDB" id="5971890at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF19">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="320" mass="35775" checksum="102D7E88544064EE" modified="2020-12-02" version="1">MAQQNNTCFGVLEPFDGGDFIDYSERLNAYFIANNIGQVAAEANEAAKQAADKRKVAVTISVMGKSTYSTLKDLCLPDFLAEKSYEEIITILKGFYKPKVLEVAETYRFHQAVQTESESVPQYANKLKRLAVHCNFGTYLTRALRHQFVGGVRSRSIRKKLLSEDRTFDQAVKVAQADELAEKESKELLLSAERTKTTQAHSISNKKKYSFKGGEANKAKPVEQGKTCFRCGSTQHLADKCSHTYTRCNYCKKAGHLTKVCFKKKKADSKAKAHNIVATHTDESSDSDSDMNSVNGTPLTIFMQNVNSVGQKSRHNTNWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EER1</accession>
    <name>A0A7D9EER1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005799">
        <property type="protein sequence ID" value="CAB4007439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EER1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="18132" checksum="86EAE37804428CE7" modified="2020-12-02" version="1">MQVYNLRENFRAVSELSRPVFNDICHLKRRRSSQLADSTANFKATKVIHLTRDMLLVTLLKLCGDVALNPGPVQLNLQSPISKGLKICHWNIQRLTTTKQDEIKISLTENSNNSNKIDILFLSETFCTNKTPDYLYAITDYKLFRKDRIVTQNESDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJI1</accession>
    <name>A0A7D9EJI1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077474</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007008">
        <property type="protein sequence ID" value="CAB4011037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJI1"/>
    <dbReference type="OrthoDB" id="6762797at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13730" checksum="3063454F36B6D489" modified="2020-12-02" version="1">MADFLGNNTIFNPNNSAYRRGHSTTTTMLAIRDDILRAMKRGEVTIAVLADFSKAFDTVAYQIVLSKLHRLGFSNTSLKWLISYLTDRKQYVQVDDRSSERVGVTFGVPQGSILGPVKFIRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELZ6</accession>
    <name>A0A7D9ELZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075407</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007966">
        <property type="protein sequence ID" value="CAB4013646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELZ6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12316" checksum="08D9AF999D12A465" modified="2020-12-02" version="1" fragment="single">WNRTALTQNTSSPFNTLAGEENISRYQVDNFKATNMKRVPMEQLDFTIYKPSSNLDAFCSNEERLPTWIRAMKLRYCKDNLEFAEDKIAVQWEESENPNDETTKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ETZ4</accession>
    <name>A0A7D9ETZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009226">
        <property type="protein sequence ID" value="CAB4016704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ETZ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20378" checksum="AADAF4634872E95C" modified="2020-12-02" version="1" fragment="single">MDEKTKAATDLETRLTQLSLAVKRSQSIIESGKRVAINRHLEALQTTAKEASRCKLAVEAIKIVEKEDQTVINEWSNEIDAKFDAADEATIRLEKWLADADKAEQFVTQEEQLKFELKLHEKKLQMQAELAQSSVEKPETQKFIESTPISSTEAKAVKRILGTTTAIDGDRMNDLLEAYSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EXL7</accession>
    <name>A0A7D9EXL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058297</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009763">
        <property type="protein sequence ID" value="CAB4017908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EXL7"/>
    <dbReference type="OrthoDB" id="5961134at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15069" checksum="9ECB039720616B0A" modified="2020-12-02" version="1">MVDHFQDLLISLEDDEQVTGYTEALAWNDGQDSIANTEGNDKETGSYQSPDLTLAGALGWLTGQKHVPINEDNLKIHVDFDHDCMTRNNLHTVCFPVVGACVRNVTLPVEHMKTSDDFKRVFLIAFSKGQSFGNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H6U6</accession>
    <name>A0A7D9H6U6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aggrecan core</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A060502</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000020">
        <property type="protein sequence ID" value="CAB3976916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H6U6"/>
    <dbReference type="OrthoDB" id="9946071at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000506">
        <property type="entry name" value="Adhesion G protein-coupled receptor E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039">
        <property type="entry name" value="FIBRILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039:SF57">
        <property type="entry name" value="FIBROPELLIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 5" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3976916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="42499" checksum="5249693F334721BA" modified="2020-12-02" version="1">MLCFAEFTCKVDAIYYATSSAIKGVFSDGNSTVTILSESNVKLNYDSLSERLLYYDDDNLIIVKLDGSNATIIASLSTILRFAVDHTTRNVYYITNLFRNVRSIDLDTGADNLVSSDLGSGVEDLDTDPNNRSLVFAGASNGDIVRYFLDNGAQEVVYNNNRSPRFLSVDSEYEVIYWIDYIAANDSYFLMKTYFNGSISQVNYYYPCTTSSIKIAIGRDDFYVMDSTRGRIDRFDRRTVSLQNTFYLGDTAEEFTIVQDLDECCIGGYCHDNATCTNTPGSHFCTCKEGFIGNNTHCEDINECETQAPCHANATCKNVDGSYYCACSGNGFFCEDECKDLMLIEKNQLASAAWKLTGEDEKQVFKSSSDDLESWLLAKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HRA9</accession>
    <name>A0A7D9HRA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">F-box only 43-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A042696</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001824">
        <property type="protein sequence ID" value="CAB3991310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HRA9"/>
    <dbReference type="OrthoDB" id="9984940at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045835">
        <property type="term" value="P:negative regulation of meiotic nuclear division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007088">
        <property type="term" value="P:regulation of mitotic nuclear division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22086">
        <property type="entry name" value="F-box_EMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047147">
        <property type="entry name" value="FBX5_43"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15493">
        <property type="entry name" value="F-BOX ONLY PROTEIN 5 AND 43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15493:SF9">
        <property type="entry name" value="GH14043P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="2">
        <location>
            <begin position="244"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3991310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="423" mass="48152" checksum="1306074D89ECE59F" modified="2020-12-02" version="1">MAQGSFSGETRMLSRSMEQMCVNTPVGKKATKRNGDSFESDLSAPLSPPQTIDTKQKRERSESLMLCHTNDMVATKRRLRSRSRLDLGPEDIPSAYMSPPCSSKTRDRAQSRSHNQNEMFCHPEEFTKCLAFNVEASSVYMTPASEPREPLQDKDMNKIDPENLSSFHQELCQSDSSSDEETIPCLEDKTRLKLNFDQYAAEALPQGKPAASLAITPDHSKIIGRRMGDKKLDFIKELVNMNCEEICKQIFCNLEPRDLQRVASVSKLWRRICKKDRIASPRLDQFISGRKQHVMRKGKENLGHHTKFDYSVPPRHPFSVKDHNTIWTPDQKQLTTAIEAVKTNILLTYDRIKCPLCGSPSRKSANDMCECDECKEIFCSLCQHKVDKNHKSGKCGIKMTKSKNVKGKEPIGSKKSKDRLKRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUR8</accession>
    <name>A0A7D9HUR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063193</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001761">
        <property type="protein sequence ID" value="CAB3990961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUR8"/>
    <dbReference type="OrthoDB" id="6014843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20162" checksum="9306E7C1CB349C9C" modified="2020-12-02" version="1" fragment="single">MADKETTPTKVYSRLDISPASKNRICVICSLSVENADVRRRLFCPSSQNWQKTKACLSLEFLLGVELDRNSVLTDIICRKCFDRNETLVKKIVNVREGFECSKKKLYSERCTAYTKRMGKDDADDVWPTARKSLFQADCGVKNPSCPAMTLLKTRLVSTETVSGSTKEKGSESLSVSSVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I0V3</accession>
    <name>A0A7D9I0V3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A001485</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts as a defensive agent. Recognizes blood group fucosylated oligosaccharides including A, B, H and Lewis B-type antigens. Does not recognize Lewis A antigen and has low affinity for monovalent haptens.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the fucolectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002580">
        <property type="protein sequence ID" value="CAB3994997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="547680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042806">
        <property type="term" value="F:fucose binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010185">
        <property type="term" value="P:regulation of cellular defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001868">
        <property type="term" value="P:regulation of complement activation, lectin pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006624">
        <property type="entry name" value="Beta-propeller_rpt_TECPR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051941">
        <property type="entry name" value="BG_Antigen-Binding_Lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006585">
        <property type="entry name" value="FTP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037524">
        <property type="entry name" value="PA14/GLEYA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713:SF6">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713">
        <property type="entry name" value="FTP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22633">
        <property type="entry name" value="F5_F8_type_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19193">
        <property type="entry name" value="Tectonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00607">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00706">
        <property type="entry name" value="TECPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51820">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3994997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1415" mass="159702" checksum="C22DC6635B6557ED" modified="2020-12-02" version="1" fragment="single">VVSGIKPSSQVPYADNIKVKWTPLSQPMKQIDTGITSYVWATDSNNDVYYLNGSRFEQVPGKLMHVSSGAAGIWGVDPQNEIFFREGVDRDHPIGSEWEKIKGKLLKIDSGPTNIVCGISLSFKTFCREEITYANPTGTKWQRIPGRMKYISCGDYGCWAVNKYNSVFFTSQVKNWSTKWIKIGCYHMVQIEAGPNGQVWGLNAKNELFARIGVDQRFPSGFLWKKIEAKNLVSVSIGKMGKMYGVDAGNTVHVGSIVQEKSPGRVLMNTAIKRCLAPDSLPATEGTGVIHTSTCSDSSALFRVLDSGAIQHVQSGLCIHLSGNGECLQERELAVLKQDCSNPRYFFNYTGKGFRIGQYCLRPWSFRRPDSTTLTIYSYDSCNIPETTYEFVDIVKGCDLQCLRYIKDGKENTNSFAEFFKRSEAEVKILASECSKFISTLKQEIPELYKDLLSTFFPVDPKVVENLEILVNHFGMEKMKAYPSLFLATAFIRRNMGVNASEPAVCGGTGIHIGGEPAIDEEDAEYKLSLSKSELASFLDDEDYRAQQAIDKEKEEDEKSGINTKDEVSAVQQLIDHLEGKYYYKFWTPESLKPVMDLCGVDGESEIKFPPRGDGMSGIEYLEYYFSRDPALLPDENLKFPWPLALALNIQTSVRQCNWIWRRLENGERTVRYSKYTFDYDKNNVKCKASDWNPCSVPRIIEDGGVCGRQSTLARVTNHCLGIASGGIKQPGHAAGYSYTKSSSSYQFQVFQGITSIMNTYAVWDLVDNQHFPEPKLNAEYHKGLANAMNHGYESYRNGRIALLIFSRIYDAELRQNSRHLLVQALEGNPHMMDIWMKLIHDITGNSALPIERENVFTRIPEKCPTNFHNSLRNRLIVIINKHLNKYMQMYVEVLFRLISPPSCCSKGQPKYLNILRSALSNEQRELVKEYLFDGYVSCASKSASIREVVKTIQETIVSKAALLELDVLSELLHTIQSIASREDAKVEENKKILIDFFTVVCDVFSRIHVTASAWVIGAHYRACVEMQLEFLNNHTEGSLFQTVFVAWTKLQDNSTKPTRTWNEYYLKNWLYGRTGDIIPLLVGVKESVDGGLIREIKVNIAKNKTTALSSTWKDETTSERAVDGNTDNLIAGESCAVTGRQNNPWFQLDLQKSTEIYGLLITNADANIANGFRKFEIHIGDNLDGHGVTNPTCGNFHSIRRGQTRAFYCDPPLVGQYITINVFATNQVLAICEIAVYDSELTSYRIKGVKLDIWYNIPTKYIQQLYNDPRYPENPDLTSKLGTFDYLNRGDEYGGRLSAVYQPTISGNYTFYVACTDECDVFLRDGESGGTLQKIISLKKATKYQDWNASADQKSLPIHLEKRNLYELVATLKEKGGRDYITVAVELPNREFLAPIPAERLFIDTKEESIEVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I868</accession>
    <name>A0A7D9I868_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A057281</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004795">
        <property type="protein sequence ID" value="CAB4004054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I868"/>
    <dbReference type="OrthoDB" id="1935146at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034388">
        <property type="term" value="C:Pwp2p-containing subcomplex of 90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045161">
        <property type="entry name" value="Utp18"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18359:SF0">
        <property type="entry name" value="U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 18 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18359">
        <property type="entry name" value="WD-REPEAT PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="3" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4004054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18381" checksum="63EDC9CD70CFC8AC" modified="2020-12-02" version="1">MDDTDTMQIGKDSEDNQWLIVIKENVVHLNKEDDLLEAKSPAWVDEDDSNVRVDVTSENRLKKFRDGGDDTISGDALKKKLETQFKKIYGVPAWASETLRSAKQSDEEEDQEDNEILQRAGSFISKKIGHLPKGIIDIGNMKDANCSKPFDVSEVFFTCIAKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9F2</accession>
    <name>A0A7D9I9F2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Interferon-inducible GTPase 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A063111</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class dynamin-like GTPase superfamily. IRG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003683">
        <property type="protein sequence ID" value="CAB3999840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9F2"/>
    <dbReference type="OrthoDB" id="422720at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000541">
        <property type="entry name" value="Immunity related GTPase M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030385">
        <property type="entry name" value="G_IRG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007743">
        <property type="entry name" value="Immunity-related_GTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051515">
        <property type="entry name" value="IRG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32341">
        <property type="entry name" value="INTERFERON-INDUCIBLE GTPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32341:SF10">
        <property type="entry name" value="INTERFERON-INDUCIBLE GTPASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05049">
        <property type="entry name" value="IIGP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51716">
        <property type="entry name" value="G_IRG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3999840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="426" mass="48857" checksum="882E829E64EBA7E1" modified="2020-12-02" version="1">MGKAQSKDEEYSEEFQEAKRQIEEKGVAGAQAMMRETLIGWKDIKIKIGVTGNAGVGKSSFINAIRGIDDEDEENDDDKSGARAAKTGQIETTMKPASYTYPESPNITLMDLPGIGTPTYPDLDIYCERVGLETYDTFMILTSTRCTKLELELAQKIKSMGKSFFLIRTKIDQDKKNEKRRKKPDIEAMLKRIRAYLYEIVKDFGIREDEIFLISNHKRDKWEFSRLVEAILGKLPAHQKEALTLSLKILSKDVVIGKVEILRSQLWKASLIFHLTIVVESELYFRPMLDILSALSIDHDESKTAHLARSERVVLAFLGRRTEFFRSQLGLPEEDSDEFEKMKPKFQERMRKFYPNEEDESFWARCFAIDISNITSTCRPSGRLTKVEKILNRVLDEMQQLSLDLLDEAATHTQEPRTGDAKQSET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAC2</accession>
    <name>A0A7D9IAC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A061312</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the H-rev107 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005222">
        <property type="protein sequence ID" value="CAB4005507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAC2"/>
    <dbReference type="OrthoDB" id="5976215at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016410">
        <property type="term" value="F:N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008970">
        <property type="term" value="F:phospholipase A1 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004623">
        <property type="term" value="F:phospholipase A2 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070292">
        <property type="term" value="P:N-acylphosphatidylethanolamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1720.10">
        <property type="entry name" value="endopeptidase domain like (from Nostoc punctiforme)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051496">
        <property type="entry name" value="H-rev107_PLA/AT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007053">
        <property type="entry name" value="LRAT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13943">
        <property type="entry name" value="HRAS-LIKE SUPPRESSOR - RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13943:SF77">
        <property type="entry name" value="LRAT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04970">
        <property type="entry name" value="LRAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51934">
        <property type="entry name" value="LRAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4005507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="20222" checksum="898772ED5549688C" modified="2020-12-02" version="1">MEYDLVRVNVCECLPPGTQIAVKGLLKNLDPRLKYLYPVVSPDGYYYHHGVHLSSCEVIHFSAEENKADAKPRKCDINEFRSRGEDRGALYKVVYKNKERVLPLNQTVAKAEEVINQPDKWPKYHILDNNCESFACWLKTGQKKSVQASNAISYAIPTVACVGLMVVLVAILYIQYSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBG7</accession>
    <name>A0A7D9IBG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrator complex subunit 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045786</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004181">
        <property type="protein sequence ID" value="CAB4001790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBG7"/>
    <dbReference type="OrthoDB" id="2434995at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="37618" checksum="4287ACAB454E5902" modified="2020-12-02" version="1">MKDEKLKTYLPMSLTFFVSIFHVRKEERRQPLRTRVFDFLSPKFAAFLERQRLHSIPAKRPTVQKVQRNESRQLKWVDEKLCKDQTTGNVFLLWEAETGCKTRHGDGYYRAFNHVAQATSNDRCPVKFYKEFCRRGPDEMKTAESPFYLAIKRKRMPQNPKYLREKKLDHPENSEELASVLKSFYAEVRKKDWSEYTKNSLCYIRFGLNIYFKSVFNNDIIKDKEFEEANGVYEAHCVYLKKRGLAKTEHKPPIADEDIKKLYESSVFNTDSPATLQNKVFFEIMFFCRRRRQNFGELKSDDFAIKTNPQGNDGCQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICE2</accession>
    <name>A0A7D9ICE2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004857">
        <property type="protein sequence ID" value="CAB4004286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICE2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7028" checksum="3FAE5F3B63681661" modified="2020-12-02" version="1" fragment="single">ASMSLEIEEKKFASGGFRDAFLTTCDDSSSTLKGKWVVNKYLEESIKTVQDTLKLSVEAHTQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ID34</accession>
    <name>A0A7D9ID34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine- kinase Tec</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004446">
        <property type="protein sequence ID" value="CAB4002779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ID34"/>
    <dbReference type="OrthoDB" id="7699712at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="43485" checksum="90EB5191D4DA7417" modified="2020-12-02" version="1">MGTSHNDTCNSIALEICEFCMQNQIRLTATHLPGSCNVVAGRESRTLYKDAELNKQFKNYCSYWPDPEASHIDAFLIFWEKLNFYGFPPFSCLLKTLRKIIQERAKGIIVIPNWPTQDCFQQGLSYTSINTARSALSALLHRKDNTIPFGQLPLVKRFMKGIFELCPSFPRYEAVWDVNKVFDYFRQKCNVSDLSLKELSERLTTLLLLLSGQRSQTIHLLSIASMELSPTRCVFQVKEKVKQSRVGYHIAPIVYEEYPKEPALCILMHIKEYIKRTQKLRDPELSQLLISYVKPNKPVSRETIARWCKNVLKSAGIDTKRFSCHSTRAVSTSLAAEKSGDIDKIISSVGWSNAKTFQTFYKKPVEQTFNLGTIILNSLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHV8</accession>
    <name>A0A7D9IHV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005366">
        <property type="protein sequence ID" value="CAB4005950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHV8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10687" checksum="6983F96BAABEFB8B" modified="2020-12-02" version="1" fragment="single">MPSHHKFSRSELIRLHSKTLQVSRNVVSLLKAFNIFKHQRGKGGGRRKKAEQELSRIPVRITWRSANKINHTERRPRALTSIPRKVNSNVRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQP9</accession>
    <name>A0A7D9IQP9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MBD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A087093</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007881">
        <property type="protein sequence ID" value="CAB4013425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQP9"/>
    <dbReference type="OrthoDB" id="5947716at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.890.10">
        <property type="entry name" value="Methyl-cpg-binding Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001739">
        <property type="entry name" value="Methyl_CpG_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01429">
        <property type="entry name" value="MBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MBD" evidence="2">
        <location>
            <begin position="37"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="91"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17207" checksum="42D1C289450DC1DF" modified="2020-12-02" version="1" fragment="single">MAATTSSVDAESNIGKNLNLSRGVGFGSRLNFDIEKLVSLGWKLNERENSSGGRKRKMVTFIDPSGKRFKTGKDVERHMKEINLWDNVKWENNDDKDDLRNESSEEENANEFGANLDDTDVEHDFSSDASIHDDDDYTLAEESFNAGDPISNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IV80</accession>
    <name>A0A7D9IV80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047762</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008119">
        <property type="protein sequence ID" value="CAB4014024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IV80"/>
    <dbReference type="OrthoDB" id="432234at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18792" checksum="FD0DF5A57A8371E5" modified="2020-12-02" version="1" fragment="single">EKTREEWMILSELNTPFDNSEQSPESTYDWHLDRANYSQQQIQEMPTWIKTNKEEYTIDEQYDVVDINSFSEMQKLAYDIVKSHFDDISSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVAATTVIYRIKQETIKRFVKLTVNQRVQVMNNKRRFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWZ7</accession>
    <name>A0A7D9IWZ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071984</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010229">
        <property type="protein sequence ID" value="CAB4018946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWZ7"/>
    <dbReference type="OrthoDB" id="10055717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="323" mass="37216" checksum="A0187073E405EABC" modified="2020-12-02" version="1">MFLGAVGWYRKFIKNFSTIARPLTWLLEKDVTFTWGKEQDDAFDTLRHELVKAPVLAHPDPTRPFVVTTDASKVGLGGELSQEDAQGQLHPVAYFSRALTKRERSYPTYDREVMAMRDTLKHFRYYLLGAQVVMRTDHKPLLKILEQKDPFGRRATLMRDIAEFEPRIEFIRGQDNHMADALSRIGWNVKWEERDEDTSKVATIGGSQDEIGPCKDVRLDINDFQVQQERDPTLKPHISTHRNEHGLFTRDHKKQVLLPASLVPTILSLAHDETGHQGADKMLARIEPHYWWPKMKAEVENYAKTCQRCAATLAQGHRKAPIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZK0</accession>
    <name>A0A7D9IZK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010726">
        <property type="protein sequence ID" value="CAB4019991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZK0"/>
    <dbReference type="OrthoDB" id="10236861at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="20778" checksum="8023FB72D30021BE" modified="2020-12-02" version="1">MAARADWIKAGSPRQRSNIFYIKYKKLKCEYRREQRKAVWEYERKELSDIGNLQDLDNEKFWRLLNNKACRKNKKNKKMALEVNGKIITDSQQMADLWANYFEQLATPSEDNENFDRIHRIEIENGVNDLVKKSENALGCRFTAPLTTQEISEVIRSLPNGKAPGYDGITYEHLKFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3I8</accession>
    <name>A0A7D9J3I8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080680</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011279">
        <property type="protein sequence ID" value="CAB4021122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3I8"/>
    <dbReference type="OrthoDB" id="6155276at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="276"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="33887" checksum="FB9D18FD9204630C" modified="2020-12-02" version="1">MEITVAEKIEIEKSRILTIIKGKESLESLTVAQLAEEYSTRYKCAIACYKGEFVSVEVFLKYACGVNIIDEKVCLSTSSTNIASSSEKATGETSSSVHLVLKRQFSPFFGFSDGDKNKGVTYNVWRFEVESVIKGAFYPDEAILEQIRRLLQGEAKAKIVGFGSETSCESILGKLDQFYSDVGTATRDELLAEAYQMKQGGNEEVAAFMSRLDSCLRWAKRRGTEILPDDESVERQLQMLFWGGIKESIKDKARHKKDNCKTFAELITAARYGEKELGSNHSSRKFARANQAIYQEPGQKSPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J5Q3</accession>
    <name>A0A7D9J5Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009232</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012039">
        <property type="protein sequence ID" value="CAB4022572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J5Q3"/>
    <dbReference type="OrthoDB" id="5986047at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11969" checksum="9552C51CE20385A5" modified="2020-12-02" version="1">MLLDNDIVQGKIIKGWLRGIKYAFEAMQFITMTKGLYTPRVVHQIIYGQFVNHKGGAGNNYAKDLKMEDIVRNNKDSSNELCANKTLKVVQRSLSAESTAHMHADK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J752</accession>
    <name>A0A7D9J752_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A019965</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012414">
        <property type="protein sequence ID" value="CAB4023283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J752"/>
    <dbReference type="OrthoDB" id="9934809at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027897">
        <property type="entry name" value="DUF4559"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15112">
        <property type="entry name" value="DUF4559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="665"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="257"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="507"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="269"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="286"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4023283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="757" mass="86663" checksum="6E6FD72D35D1EB7E" modified="2020-12-02" version="1">MTKTLLDNCLACQTNVIQQPPEPLHMTDLPLDPWQNLSVDLCGPLPSGDMLLVIIDEYSRYPEVEILRSTSANTVIPKLNRILATHGIPAEIKSDNGPPFQSHVFAPFAQHMGGEDADTASKAKPHTLQVGDTVLVRQKRLNKLYRCTTHNISTITQVQTSPFKTQNLRMTAMNDPIPEPPTERKYPARENKRLPERIYAAANDLETEWAVIKGVSSFAGREDMTEPWQIFASTMAASVVYNMFKYSVVLEDWPRNKETQDDEPWSAPVASNNTNTSSQSPEFDDESHPSKSETTVKPEADLIEQHLLQMKIGHRNWLAVGQALVPLCLGLRKYAEREMKKLHALITTNVGGVKCYCTCTYGKKPKPRGPAHPHGRPRTRCIWARELKNHHVFPQKEEISWHQSVGSRWDDPVHGYWEIAKLFMSDLGGNWATTTDPATTDFGSLLSLLMFCNHFKIRQSRLEAVKYWKYTWIRTRSQTFTDKEKKDAFTDIDNLMTDRQLESIKEVQDCRQSIKEIEKEEKDLKISWNQQLKEAREEIKIKETKDEIKVAEGEVKETKEEINETKEELEVGEEEIKETKEELKETKGKIEVAEGEVRETKEEINETKEVKVAEEETKGTKEEIKETKGKLEVAEGAVKETKEEINEIKEELKVAKDKIGVVRTILLSFFRNILWLLWFLTVFLMFCDRSVMVDDGFTSPTAMINLPISQFLEFNSSHLAYKREKLEMIFRKNETVAGVLVTVATGTLPEILHRISF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J936</accession>
    <name>A0A7D9J936_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A019408</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013067">
        <property type="protein sequence ID" value="CAB4024496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J936"/>
    <dbReference type="OrthoDB" id="5989761at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00504">
        <property type="entry name" value="Ubox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="194"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="208"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="228"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4024496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="545" mass="61568" checksum="8BB1E8E6F3C6CD78" modified="2020-12-02" version="1">MANASTTPNDTNTAYLDHFTCNICLEVLQEPVQCVKNEHYFCKKCITKHLTRSQTCPVCQDALTPETLRPIPRTVASLLEQFQSPRCRYASRGCTSAVRHEALLSHREECGFAPVQCSHEGCEATVNRQDLVSHQQACEFRLVTCEDCHEAMRQTEYRKHTCVLRKEVDENKRELVEVKRILREIQDEQLRQGVETQRLASRNPRRPSATQGQQSNNLLQPAREVRQPNPTRGQQCDNSKADSASPNLFSQVSSMSSPIQNQATVNRQIFVAGGDNKSYEIFDWSTQEWTLYEDTLFFDHEDGLSFVYDNKVMICGGNKTNRVECLDIASVSSDVFPLLMPSRGKGILCGDKILTFSRHSVSTISLKSPFEITNFASYASKKGRDRPHCVAFVNENAVVLVGAKLGDDVLMYNPTTQVIMNLAPLPYQWSDMAAVVHDGNLIILGGCKQYGEISNDVLMYNITNQTCRKLPSMLERRSHFAAMIMGDKIIAIGGRTYSSENHHHQMFHCQTPLNTVEYMVLGEDRWKKLPAMHCQREDATACLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JJ02</accession>
    <name>A0A7D9JJ02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A075130</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017097">
        <property type="protein sequence ID" value="CAB4030731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JJ02"/>
    <dbReference type="OrthoDB" id="5990438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="70"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4030731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20820" checksum="5AA4B113CD455436" modified="2020-12-02" version="1">MKKIRDAKRPRTKKKVKAFLGLIGYYREFIPNYAVKAVPLSDLTKKAQPNQVIWSDAQEKAYSTLKTELTRLGAVLLQEHDGKLSPVSYASRKLTESEKKYSTIEIECLAVVWAVRKFLIFLYGTEFTLQTDLQPLVYLKTVKFLNNKVMRWAMFLQNYGIKIESIKGVDNVGADYLSRVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K183</accession>
    <name>A0A7D9K183_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066308</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025978">
        <property type="protein sequence ID" value="CAB4039865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K183"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="29492" checksum="A3BDCEB315AB5DE6" modified="2020-12-02" version="1">MASGNLQWAAPKPLKLDGNVSENFRKFEEHWTLFEKTELKGRSEEERCSYFLLCIGEKGREVHKTLTFATPETETNQEGATTWKRTTNELKSAFKTYCNPRKNITFERHKFNIRNQDENESIDQYVTVLRTLAATCEFETLHDGLIRDRIVCGIRNQSIKERLLRESELTLQKTLDICRASEVSRKQVKSLSDQSSANVDALGKDQRKHNYRGNFRNHNNKPETENPQTNPTVIVVEFTSQNLALHTGKSAITVKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KHU2</accession>
    <name>A0A7D9KHU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069138</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035380">
        <property type="protein sequence ID" value="CAB4044554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KHU2"/>
    <dbReference type="OrthoDB" id="5958943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14050" checksum="EBAAFDAD77BD1426" modified="2020-12-02" version="1" fragment="single">NNKLEYIFYSNATHISYVSVDGGESTAVLSAQSANLGYDEQNYRLWYYDTVAATLHKANLDASGLETVSVPSTFGQFAVDGVNQSIYYLNDNDDTVKSIDYIGNHFPEIGVLQGGNEFQDIQIDPHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KWD4</accession>
    <name>A0A7D9KWD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030936</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011494">
        <property type="protein sequence ID" value="CAB4021548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KWD4"/>
    <dbReference type="OrthoDB" id="5986638at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="29144" checksum="80372E7538350507" modified="2020-12-02" version="1">MAENADIDLCKFFLEEIPSLYNQAQRTLHCNDINVLEFFERRLDDHIHVIKAVIDQCQQMTEMRVNEELIELLLTVHRQVNCLYENVQELCFMHRDYHLELGFVCPVEQIEHAGRPRFHVPPQMISGLYDIHRSWVEVAREAGVSYRTLLRRRHQYQLPVAQIRGPRNNFSEISQDHLCDAVTQVLHLLPNAGETYMIGALRSRGIFVQRWRIREAIYTVDPVSRALRRQRAVTRRSYNVPCPNALW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXL6</accession>
    <name>A0A7D9KXL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA-binding 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A030887</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011238">
        <property type="protein sequence ID" value="CAB4021041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXL6"/>
    <dbReference type="OrthoDB" id="29221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd16162">
        <property type="entry name" value="OCRE_RBM5_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12313">
        <property type="entry name" value="RRM1_RRM2_RBM5_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.10">
        <property type="entry name" value="Zinc finger, RanBP2-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041591">
        <property type="entry name" value="OCRE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036443">
        <property type="entry name" value="Znf_RanBP2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13948:SF3">
        <property type="entry name" value="FI21118P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13948">
        <property type="entry name" value="RNA-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17780">
        <property type="entry name" value="OCRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90209">
        <property type="entry name" value="Ran binding protein zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="373"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="213"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="407"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="426"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="642"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4021041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="642" mass="70404" checksum="45FB6EE3CBF9A0FB" modified="2020-12-02" version="1" fragment="single">IHEILASTKLPYKDVRVVKTREGYSRGFAFVEFLDMETAKKWIDDCKGKLVIEDDSVIMDFSRSKMAVESHRDWVCSKCGTQNFSSKRRNTCFTCNTPKDENDETKELGSTPCKVLILRGLDILTTEETIRQSLASFTSTPIFDVRLIKDKLTGTSRGFCFIELGSIEEATQLREELQAASFTVDEKVLVISYAKFGTNPSKSGTVAVGSCSSSATTSISETPSTSSTANPSRSKFAANAIAQARAAAQMGHTTDPQMGSSMDHYSTAETTFPATQAASSTVQDTAVSSEVSSETSTVTPVDSTAQTPAPQAISSYVYDTASGYYYDTTTGLYYDPTTQYYYNGTTQQYMYWDATTQQYVTVVSSASTSDTQAATSAVPAQPPSEAENTATSKEKQKKAKSLNAKKIAKDMERWAKKQAKNKEAARPQATAQATQDTVKESTYQYDPNDLKGASPLAALSELDDPVATSAPPAGMNYLIFKYDKSANKPSTSCVRTACPKLSTSLKQAVNNLLVRTTLTPFLAFCGKSLLRAQNQSNFHKIFTKCSPVHAKYEKLDETRRRTTRLKISNYRKINTQRICISAQMRAPAICMRCVALRPNLTLRDAFCFNCDVGGFARAHYGTWNCLVTCCSSQITSKLLSNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KZV2</accession>
    <name>A0A7D9KZV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062989</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012692">
        <property type="protein sequence ID" value="CAB4023806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KZV2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="66" mass="7483" checksum="C7771471A22A7A7A" modified="2020-12-02" version="1" fragment="single">MKVSEAKRNEDNSAETQEKCKKNAINVIKPKKNAINVITKVDTSEKTVSRMAKIADYFQNPKNFPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1D6</accession>
    <name>A0A7D9L1D6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041019</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011446">
        <property type="protein sequence ID" value="CAB4021461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1D6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="24139" checksum="C3108BA12CC12255" modified="2020-12-02" version="1" fragment="single">TFQESCWFGGANFANKPKKKEKRMDHFDVRTAPDAIPRQLMRRRESTSSDFIQAGCDEFKLSSDNSPTDNFKKLIISLSVRGKSKNRKKQLNVSMEEYSYQFNVKIVGMPLKAEKESPETTANLCLQLFAALGVKDISLQDIDIAHRMPARRASSHPNSIICKFVWRLAKNKVMEARKEVSKLQAVQLGFSSGIPVEHVNIYDHLTPRLHTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L5Z5</accession>
    <name>A0A7D9L5Z5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Multidrug resistance 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A088361</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014182">
        <property type="protein sequence ID" value="CAB4026418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L5Z5"/>
    <dbReference type="OrthoDB" id="6515795at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015421">
        <property type="term" value="F:ABC-type oligopeptide transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090374">
        <property type="term" value="P:oligopeptide export from mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394">
        <property type="entry name" value="ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394:SF27">
        <property type="entry name" value="ATP-DEPENDENT TRANSLOCASE ABCB1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4026418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="18498" checksum="BABE925728B838D5" modified="2020-12-02" version="1" fragment="single">MSSEKTSLLDASTSDDSKVGFKPSSKTSDTNGDVKLVPVGQLFRFADGTDKFLMFLGVIGSIIFGAIAPVQCVLMGELVDDFVDFTICHNNINCTDPPDLQDSMTTIGLWYVGFSIGNFVFAWMGMGLFGLSAERQAHKMRLALFRSALHQEIGWFDAHTGGELMNRLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L7M1</accession>
    <name>A0A7D9L7M1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072041</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015590">
        <property type="protein sequence ID" value="CAB4028597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L7M1"/>
    <dbReference type="OrthoDB" id="6009357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.90.10">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029034">
        <property type="entry name" value="Cystine-knot_cytokine"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15399" checksum="5781D37B61E8E5CB" modified="2020-12-02" version="1">MIHVNKSVARMEHGSSNLRKFLNYDEERISWLRQKRTHAYRNPCKKEENVVYTSSLDKTNSCQNCTYFPSTLKEVKCSTGHGLNVRGKTSCNYNIDGDCINIVATIKVIKAYSKNQQVERDVHLKVGCACMLPPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LD93</accession>
    <name>A0A7D9LD93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062228</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016931">
        <property type="protein sequence ID" value="CAB4030523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LD93"/>
    <dbReference type="OrthoDB" id="8300278at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19730" checksum="EF2DE36B8FD3DE20" modified="2020-12-02" version="1" fragment="single">MGRKQRVVVDGVSSSYLDVTSGVPQGSIVGPLLFLVYVNDLPDAAKYSKVPMFADDSKCYRVIETSHDTQLLQSDLQSLCNWSSTSELKFNLKKCIGIRFSRKRLIESPEYSLNQEPITLKPSQKDLGIIISNNLKWSPQITSIVSKANQMLGFLRRNCIHLTDTKCRRSLYLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFW9</accession>
    <name>A0A7D9LFW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024791</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017997">
        <property type="protein sequence ID" value="CAB4031938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFW9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14440" checksum="CBE1D2F1FC7B5A94" modified="2020-12-02" version="1">MDNIDIIFDELERNEIDIDKQTLSFHINTILDRHRDLYRAVNVRDLNLDQIYREINVTNFGCIIAYLALVCVQNDSEESIRHNIQKTIEACRIFTIPKHKRSKRPILITLSLTLTLIALYISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVZ7</accession>
    <name>A0A7D9LVZ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023196">
        <property type="protein sequence ID" value="CAB4037537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVZ7"/>
    <dbReference type="OrthoDB" id="5989563at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="184"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="25818" checksum="2FA66A9BC941C64A" modified="2020-12-02" version="1">MACEEGIEIESAIYDMLQAYRQTPHPATKSTPYEVLMHRQVRTRLEHFPTEVYITQDEVKKNDKTYKQKRKQYHDKRHRVKTHTIKCGDAVLIKREKKRKKHTPYEPYIYVVTSIKGSTIRARRVKDGKVKCRDASKVKPLRTAQLSKANDETASVKVPSSYEATTSRTTFQDTDSSNIRDTTSETIDTTSETTTATSENNLRRSERLKKSTYQGKYKDYIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M131</accession>
    <name>A0A7D9M131_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methyltransferase 15</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063507</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008460">
        <property type="protein sequence ID" value="CAB4014824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M131"/>
    <dbReference type="OrthoDB" id="5988477at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13148" checksum="E026317C7C6DD271" modified="2020-12-02" version="1">MSTDGSNDKDLDKMNPITVKLFDINASRAVTRFLDMGVTQGVDAAKASTIFEAIDEVKTDNSIPWKNCIAFSVDNTSANLGQFNSIKTRVLERNPDCYFFGCPCHILHNTAGKASSQLKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FK39</accession>
    <name>A0A6S7FK39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Synaptic vesicle 2-related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A042821</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000255">
        <property type="protein sequence ID" value="CAB3980085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FK39"/>
    <dbReference type="OrthoDB" id="4139357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23511:SF5">
        <property type="entry name" value="MAJOR FACILITATOR-TYPE TRANSPORTER HXNZ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23511">
        <property type="entry name" value="SYNAPTIC VESICLE GLYCOPROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3980085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="502" mass="56628" checksum="3284D39289692504" modified="2020-12-02" version="1">MMSRIVDRFNNRLGRARSPTDDVGARYTSLPHETVELEGLTSEENLESSGPTFTPDDAITYIGFGIFHIKLVLVLGLVWMVEGMEIFVMSVLAPYLRCHWGLSYYEETLLPILTSLGMMISSPVWGWVCDVYGRKKGLYISSVWFIYFAFLSTFSPNYRWLLFLRFLVGVGIGSLPQVSTILAEYTPAKARGKVLTFITVFWSIGFIFAASLSLWLMIDYGFRVLLAALCVPGLLFLWSFYWMPESFRFYAVSGQGDKALEMLKHIAKANGSCLPPGNLTVTPVSAVKKRGSLIDVVRSGYFRMTVTLWLIWFISIMMYYSSVYVTTEIFDRYDDNICHETEGEKICKCKVFNRKDYIDIIWTSAGEFPGVIMTVLLIDWLGRKRTMYVNAFVAIGCQSLLFLCLNRTGATVLLMVIRCILVGYSAVVFVYTPEAYPTSIRAMGMGSGYVFGRIGMLTAPFIAEALFHISFQATKFFFVFSLVIGFLAALSLPFDTMGKVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FKE3</accession>
    <name>A0A6S7FKE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Integrase recombinase xerD-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A031027</name>
        <name evidence="4" type="ORF">PACLA_8A041973</name>
    </gene>
    <organism evidence="4 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000084">
        <property type="protein sequence ID" value="CAB3978007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020015917">
        <property type="protein sequence ID" value="CAB4029060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FKE3"/>
    <dbReference type="OrthoDB" id="10039881at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052925">
        <property type="entry name" value="Phage_Integrase-like_Recomb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605:SF6">
        <property type="entry name" value="TYR RECOMBINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="141"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3978007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4029060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="323" mass="36686" checksum="8AE3EF204AA8966D" modified="2020-12-02" version="1">MWKGICLKDPELRSLAGDIPGILLRDRAPRTVRKYQDSFQRWHTWAESKDLCSLPATGQEIALYVAFLLRTARTMSTIHSAVYAIAWAHKKAGKKSPTEHTLVKQMIEASRRIVGLKPVNRKQPLEAKHVKAIIVKFGDGNLGQLQIATLITLGFSAFLRWDDLSKLERQDIAMENDHMKIFLVKRKNDQYREGSWILVARSGKISCPVKLLEKFLRMGKHSQQDKLFRKISHTSNGMQLRKSPLSYSRALELFKMQISSIGLNPSAYGLHSLRSGGTSEAAAWGIPDRLIQRHGGWRSEKSMNMYIKETHNTLLRVSQSLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL46</accession>
    <name>A0A6S7FL46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A050252</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000295">
        <property type="protein sequence ID" value="CAB3980495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL46"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="205"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="156"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="22"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3980495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="425" mass="47744" checksum="777702F2803ACE84" modified="2020-12-02" version="1">MSADDTEPAVNIIEPVESAEGSARDEELTVQDKLRDTRKKNERLRMTKTLAEQVYELKKRSGAHASESAVPNGAPGVVTSSDAARELALSGSAREHLLESQIEQLSIQDLSNIIASLMVLCEKQQEDMTTLKAQNNEISTVSRTRQTENDNLNTVNRTLKTDNENLRIDNKKLQDENEQLYQSGINLAFENISWFIENENLKEKPQGDEVYANDNENRSAEDGETSTQVEPPELVRFSIALNCPVSCGYSVVFFILYMMGFRLCIRRFIAEVQCALNNKFREAKLEVGKCSLSLTEFLKVGLIDEMFARSITDEYKIGDALREAKERIQGQLHPAAFMIEYEEGPDGRKPIGHCVAVMPDGKVIDVEEGKYWEANSESRISYIYVVNVKESEVIEWQHKCALQKCEAECTVCSECLLGSLDGSSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL95</accession>
    <name>A0A6S7FL95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040677</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000083">
        <property type="protein sequence ID" value="CAB3977982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL95"/>
    <dbReference type="OrthoDB" id="6506929at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026049">
        <property type="entry name" value="C2orf42"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13518:SF1">
        <property type="entry name" value="C2ORF42 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13518">
        <property type="entry name" value="PUTATIVE TREBLE-CLEF ZINC-FINGER C2ORF42 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="841" mass="93782" checksum="12872E43A03A1DC9" modified="2020-12-02" version="1">MSSKMVENSTNICDATTDTKDKGLLLVTVREGSSAPLVLRRFSEDGKVVLGLEQVIQGGFRKIEPKPRSESKEDECEDNIGGHTQSPRLLDSRSTRRGVRICPACQGRVGYRSKVCKHCLKSSGNSNKCTTNVKKRRVGQQKNKRKTKNTTRRVREQSGLAQENSEECHATVSIDNFDVPMSDPNPDETLLYVHVPTTTSTLETISNIDSHISGTANRTLSIENDCQILGIVNSNNDDVVYKAQTRLEVDKEDESSFNKVKTGLVEEQRVDRLGEVNNSGHELSQNLDNETCNQEFTLCRNNSIPSLPDMTVGRDDEELSQDEDLGQDSNNITSNVVDTISDSSANNVTNKVNDVGNLGTLADGVESTANDVQHQTNVMKTLIDYREKLATDAEICNGSTCDEDIPSKEGLSIHRISEDLTSEDVNSKVVPLNENSSPPIILVDVNSIGSISVTTTDDNSQSADANSVQASENPFVFENTDVNFSTENGNGEGPVDILAEIKVRSEQRGNVKRKKKPKVWQELRNRRKKARVSTVQFIRIEPKPFVDISEDSRKNKQGNVKQNRLLSSNPTRRGVMLCPLCQRDVGCRSRTCKYCKVAISLYSTKSPLDQKNLLAVELCEETSPEYTIFSVKKTLNASEDRCFVKKVKTTAEKGLPKNDRISEVFSCDCVGNVPTEKPSCEHTICMYKGPKITQARNITLTPSKIGTLPIDVFFKHKLGELWDKVKDKEFPLVQQVCQNILVVLDVDSNVERTPSSCIHVRFEKIRRRSISELHIFCSGMTCSAWNEVEDGEKDCPVTCIHYCVSLWAIASDNDLQKYLKIFLDATQVYLHSEVFDNVLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPK7</accession>
    <name>A0A6S7FPK7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Meckel syndrome type 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A057731</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Cilium basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000073">
        <property type="protein sequence ID" value="CAB3977816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPK7"/>
    <dbReference type="OrthoDB" id="10263520at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036038">
        <property type="term" value="C:MKS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010796">
        <property type="entry name" value="C2_B9-type_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12968">
        <property type="entry name" value="B9 DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12968:SF4">
        <property type="entry name" value="TECTONIC-LIKE COMPLEX MEMBER MKS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07162">
        <property type="entry name" value="B9-C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51381">
        <property type="entry name" value="C2_B9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0966">Cell projection</keyword>
    <keyword evidence="3" id="KW-0970">Cilium biogenesis/degradation</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3977816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="562" mass="64455" checksum="E82F92DD1FC1EEEC" modified="2020-12-02" version="1">MAEDLENVNVGHYRSLDLPKNLALRVKLRKVTAASSIPVASASRLGSTAESLRNVEDLGQEAIEMARMGRSSHEATSGDQEEIIVKWQEKLFSQREEVFYSNRPNCYSVLQEQYHRDITNLRHKNGRRNHKIFTYVDNDDYANTEEVCKTMTTDPSEMPHYLTNNMVHVRRRNIDRRSARNRLGHHGPRTNIVTDDQRELAKQNSHVISTPFKIMYIMADLSLDDRVGTLDDEYILCSIKIDGTGQITIKPDLNSSKSPYRIQTSGDLKEVYEYTLEHASQEVTRDEKEQEIKSYDELYNRHAMYLASQVGSEFHPLPQAGVLNTSIFGEIVSAEDFEYDGLYVHFFMELPKYWSSQGSPHLSGVTHTCFVKATEKSNVAHFSFPFEFHISYQPPENDHEDFIRWPTLFLEVLSVDQWERFRTEGYGYITVPNKAGTHEITVNTWRPTGNGLVPKMRRFFIGGSPELEDVTYVKQPAGSEDHKVLSKFGFKTATSGSVRVKLNIVQQYQGFMESQKTKKKVRTMIHGVRGFGVMESLAQVLDAFQRARKRMQTARGTLPSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GD09</accession>
    <name>A0A6S7GD09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040504</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001508">
        <property type="protein sequence ID" value="CAB3989555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GD09"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="375" mass="43149" checksum="11273FCB5ADB62CF" modified="2020-12-02" version="1">MVVETKTRDSNEIFRHIVKPDDMKAALLVHGGDKILSIDENRAEPEGDLDKYKKLIAKIEHNQSIAQYELELRRLAKECDFHGHDEEMILDRLKLTCKDESLQAKALENNWTLEDFLKYATTKQDVEAQRNEMKMEIKKESLEVRRLADKRFSRGKSQKQYSFINRENTRKPMNDVKENRTCTKCGRDKSHSTCPAAEKECFNCRKIGNFRAQCFSRKPDSRSKQVKAAGLHGGSVMNDVQQDSVDSSDSDHEFYKCIIVDPDTGADVDLISVKDFKRIHDANPEIKKQIKKPKQKIYALNGEELEVIATIKDAKLSNKNAEILTDLFVIEDGIHKFPLLSERTVMNFGMIKYSAEGEFVKKVDARRSDDKEKKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDJ6</accession>
    <name>A0A6S7GDJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083337</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001165">
        <property type="protein sequence ID" value="CAB3987389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDJ6"/>
    <dbReference type="OrthoDB" id="6144055at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="384" mass="43211" checksum="21EADA07BDC86A2B" modified="2020-12-02" version="1">MWKTINKLTNKQSKTTVISEIQNDNQNLTKKHEIADALNSHFNEVASRLVNNMPQSSRTFESYVTRSDTQFTIQNVSLTKVHKLLSTIKTSKSAGHDRIPGKLLRDAAEVIAPSLSAIFNASINTGIFPEDFKIAIISPIHKAGSKTNCDNYRPISVLSSVAKIYEKLVTEQLEIYLETNHILAEQQAGFRKNHSTQTSLLNITNQWLMNMDNGLLNGVNFLDLKKAFDCVDHNILLKKMHCYGIRGHTLAWFQSYLSSRIQICKVDQTMSKTRTVKCGIPQGSNLGPILFLLYINDLPNCLTSSSASMFADDTNVSTNGKTNDELQERINVDLENIHQWLLANKLTLNKDKTEYMIIGSRQRISNLVLTDPKIELGESVIKRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDW2</accession>
    <name>A0A6S7GDW2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cytochrome b-245 light chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Cytochrome b(558) alpha chain</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Cytochrome b558 subunit alpha</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Neutrophil cytochrome b 22 kDa polypeptide</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Superoxide-generating NADPH oxidase light chain subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">p22 phagocyte B-cytochrome</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">p22-phox</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A065592</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="14">Component of the phagocyte NADPH oxidase core complex/cytochrome b558 complex, composed of CYBB (heavy chain (beta)) and CYBA (light chain (alpha)). Component of the phagocyte NADPH oxidase complex composed of an obligatory core heterodimer formed by the membrane proteins CYBA and CYBB and the cytosolic regulatory subunits NCF1/p47-phox, NCF2/p67-phox, NCF4/p40-phox and the small GTPase RAC1 or RAC2. Interacts with NCF1 (via SH3 domain). Interacts with SH3PXD2A. Interacts with DUOX1, DUOX2 and TPO. Interacts with NOX4; this interaction mediates superoxide generation. Interacts with calprotectin (S100A8/9). Interacts with GBP7. Interacts with NOXO1. Forms a heterodimer with NOX3 and is essential for activity and cell membrane localization of NOX3. Interacts with NOX1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the p22phox family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001618">
        <property type="protein sequence ID" value="CAB3990188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDW2"/>
    <dbReference type="OrthoDB" id="2445232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007732">
        <property type="entry name" value="Cyt_b558_asu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15168">
        <property type="entry name" value="CYTOCHROME B-245 LIGHT CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15168:SF0">
        <property type="entry name" value="CYTOCHROME B-245 LIGHT CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05038">
        <property type="entry name" value="Cytochrom_B558a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 16" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="91"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="146"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="15">
        <location>
            <begin position="162"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00032067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00033347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00050017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB3990188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19197" checksum="C36B5B665CE56E67" modified="2020-12-02" version="1">MGKTEWAMWANEQAVASSIVVFIGGVLSWIGKFKRWQIAIYAVVAGILIFLIEYPRGKRQKGRTKERIAQRLLTPVVQSLGPFGRNYYVRFVFYLGLSIPCGFLLSTLLGGACLCISSIIYLGAALAGEEWKPCIVSYEAGQENVSTLPDAPNQPPPRLHQVTRSTENLYENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIN6</accession>
    <name>A0A6S7GIN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055294</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001478">
        <property type="protein sequence ID" value="CAB3989379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIN6"/>
    <dbReference type="OrthoDB" id="6237065at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd10283">
        <property type="entry name" value="MnuA_DNase1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051675">
        <property type="entry name" value="Endo/Exo/Phosphatase_dom_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21180">
        <property type="entry name" value="ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21180:SF32">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="41207" checksum="774A9ACF1578C13E" modified="2020-12-02" version="1">MANQSETEQIDLRPEDIVEAFRLPLTVEKRQQVKAVPTKYKGRTVIRIGSWNMLSFTKQKAANPGIREVMCMTILENGISLLAAQELAEEGALEMIRDELNNPTTPNHKLWKGHRGKWECITSEVAGRMYRASECNGFLWDTSRNVELKDHGLLERKQRRKRGEKKDFARKPFIGYFKVYRFDFVLLSVHLKATGLENEDIERLQGEIDTIPNIFEAIKDSMPGEDDIMVVGDFNLTPTDKSFDDFREAGFVNAIEDGTHTNISPTRLDGSMTYDNLWIKQSGRADRQEYTGRSGVCRANQTHQWIPSNSSKSVPGVPSDHCMVWAEFFYGKDYDKSKGDDLSLKESKRFKMGDSGDEDES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GPN0</accession>
    <name>A0A6S7GPN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A061635</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001041">
        <property type="protein sequence ID" value="CAB3986600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GPN0"/>
    <dbReference type="OrthoDB" id="432528at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051746">
        <property type="entry name" value="Kelch_domain_containing_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3986600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="498" mass="55943" checksum="18CDF13E4BE59B12" modified="2020-12-02" version="1">MASNYPLGYDDERFQSIVNQNFHCLICYNVLKDPVMCRRNEHYFCRGCITEHLRRNSHKCPTCADELSVETLQDVPRIVKNYLNELSIRCDHYDRGCRELVQLQNLKRHVAECRFTPVVCGNQGCGETISKRDRTYHESELCQFRKLKCHNCGEISTMAGMKTEMANISTKIANINTNQADTSTKLAKMNTNMTNVRSGTASGGRENQHIFVAGGVGSKSVEIFNNQQRLWSLLKPMTEIRRWASSFVHNNHVTVAGGACDDRAEDNMIRMNIHPVPDLSVNWSEFAAKLPAKLYTHSSVVYKDSLLVTGGCNADQDVISDCIHEVQLKPPHTVKPLSKMPESRLHHSTILCDDSILIVGGRKSGNCEDNLSSVLSYDIRKNECQQLPALPYPVSNMATVKWGENVVIIGGTDKAGKPLNNVIIYNIKTGNSHMLPPMLHKRKGCMAVVIENTIVVLGGANERRNLLKSVEGFNFERFSWQELPDMKETRCQATAVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRZ0</accession>
    <name>A0A6S7GRZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032446</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002110">
        <property type="protein sequence ID" value="CAB3992722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRZ0"/>
    <dbReference type="OrthoDB" id="6773285at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="107"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="111"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="34289" checksum="2E4B133DCF35B400" modified="2020-12-02" version="1">MPENDDCQNNEVEHVAPRVVVVEDEGAESNQSTIIVDENCSNCEHYREELNNLLIIVNEMKKKQDEDRGNSESEMAKTDAKLKSLIEDNNKMAAEIQALKINVEETSNDNAVDKMEHSKSTDKKVTESANNNITQSQNRFEALDDENEEEASDGNQINSDVNAQISNYRAKQQEKNMKSFNEKNFMDELLNQHWEYIYFFGKNPNAMWELWKELFLEVLNKHAPLQHRKTKSSKVAWITNNIKGLINTRDKLKRKAIITKLETDWSNYKKVRNQVNIELRDAKKNYYSSKLADHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GV24</accession>
    <name>A0A6S7GV24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007201</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002668">
        <property type="protein sequence ID" value="CAB3995455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GV24"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14208" checksum="41E55D36C2FDE9F3" modified="2020-12-02" version="1">MENQLEVEQEDSPGLQLINCKVLWYNAIIRRCVDKKAKTDPEIENTVKKMQCARDKDVGTNAPFVNKSHHFDPVFLELLTPLFNRLSEEVVEGVRTRTFTECGTDVQSTKTEGSSLLRQQQPQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWC3</accession>
    <name>A0A6S7GWC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001395">
        <property type="protein sequence ID" value="CAB3988860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWC3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="17139" checksum="25EEDA08F598CA78" modified="2020-12-02" version="1" fragment="single">MGELTTAVEDDKILSHFNEVLAPYVLENQVFNKNPSLGTPSSSQDRYIVAKVEESLPKVIEGMSEDEVKQFLHTDRQANIENRNERVVAIRLGKLSECMEKRGIQKTWNEKEVRDSVENLKLASNVEIQQQDRGLIWTRFLCQPPKQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H190</accession>
    <name>A0A6S7H190_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Adenosine receptor A2b-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A015281</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001653">
        <property type="protein sequence ID" value="CAB3990410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H190"/>
    <dbReference type="OrthoDB" id="5949920at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246:SF27">
        <property type="entry name" value="ADENOSINE RECEPTOR, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246">
        <property type="entry name" value="OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3990410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="37697" checksum="3100396408B7C077" modified="2020-12-02" version="1">MNSSDDIIYITCIHPDKVYHFGPAGSYSLINIPLIVINSLLLLFTILGNFTVILAYFRNTSLQSVPNMLLITLAFTDLFVGVVAQPLFMAALLRDVLSSKPLCWLALLSSVTLKFCGGASFLTLSLIISLERYFAICHPFKHRLWVTKTKVKRAIFILWLFLLALTGSLLLGFNYNVYFVILTLMTFTGIVVLTFACCGILMKLKTRRERHVSVDDIDGRIRSHVSPSTTSNEAEKRDYKIAVTMFYIIGAIVVCYTPMFAAIIYAQVIGNRDKLYLKYFYPIAMTLIFLNSSLNPVIYCLRNRKFISAIRNLCGVSRNEANSSAYTISSSNFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H637</accession>
    <name>A0A6S7H637_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003591">
        <property type="protein sequence ID" value="CAB3999446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H637"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="194" mass="21993" checksum="B74F05BE1212BFA0" modified="2020-12-02" version="1">MKVISALVFFIIFNFVNVHGKPVSSGNNNQTCPKKLEIERLPDNVERDMETLCKMVQCNKSRKGQLSTLFPKMKSMLSNFSTLKKLGKDKIVERLYFFHNILGDGYGLFGKKKSNQLMKVKTINIVIQIKALAEILQKNTGCNPGKPGNGFIFNLPKDKPLSGNNSSFLYHFAALLKEMLPEFEKNVVEQLKFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6E5</accession>
    <name>A0A6S7H6E5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfotransferase domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A068185</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfotransferase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004051">
        <property type="protein sequence ID" value="CAB4001295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6E5"/>
    <dbReference type="OrthoDB" id="205623at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11783">
        <property type="entry name" value="SULFOTRANSFERASE SULT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="34382" checksum="1C9F3F1E0A63348E" modified="2020-12-02" version="1">MSSEKSADVSAEMLLMMQRMSVLTTDEGVHRGLSFKPRSNDVLIVTPPKCGTTWMQQIVHQLRSGGDMSFDDICDVVPFIELAYDTEIDLEAEHKHQPRCYKTHAWYPSCPKGASKYIVIYREPCAAFYSHFNFFKGWLFQPGKVLLDEFVKDYLLALGIPKKKMIFASFFVHLLSWWEHRNDSNVLFLFFEDMKDDLESVVRMVAAFIGIQDEERIKKAVNMSSFEFMKKNERMFSNVRLARCRNKSCGIPDDVVASKVVTGSATKGRELMDHKTKEIIQAKWLEVVGKQTGFQNSKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8J4</accession>
    <name>A0A6S7H8J4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027925</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002028">
        <property type="protein sequence ID" value="CAB3992341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8J4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13266" checksum="90D7176A63DA174C" modified="2020-12-02" version="1" fragment="single">MSARFVVSKTDGGIPETIQENAEDTENVEIIVEDNKELDGNTNIRNDIFGGVNPEDECHAPLYNKQDEDTTTGTLPLYEADMLKRPKVSILLSQLASYEAVQAAPTQVDQEGKTALKRKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBW7</accession>
    <name>A0A6S7HBW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Kinase suppressor of Ras 1-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A033598</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004601">
        <property type="protein sequence ID" value="CAB4003335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBW7"/>
    <dbReference type="OrthoDB" id="774951at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd20812">
        <property type="entry name" value="C1_KSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.60.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046349">
        <property type="entry name" value="C1-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002219">
        <property type="entry name" value="PKC_DAG/PE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051681">
        <property type="entry name" value="Ser/Thr_Kinases-Pseudokinases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329:SF253">
        <property type="entry name" value="KINASE SUPPRESSOR OF RAS 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00109">
        <property type="entry name" value="C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57889">
        <property type="entry name" value="Cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00479">
        <property type="entry name" value="ZF_DAG_PE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50081">
        <property type="entry name" value="ZF_DAG_PE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="197"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="197"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4003335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="611" mass="69144" checksum="539DAB64F4926788" modified="2020-12-02" version="1">MEVEFKSHSFTKVLLCRKRCNHCEKIIRFFGLRCRNCRIKCHKSCSIMLTAQSCYPCCNKRNRKLKSAFLKRNFGGNHLKSERELNEKNLDNTRNVPALKWRLGPQHAYCVSNLQACSGLHSNGTNLARPPVNLTNYIYQRRMHVSAEDVCGSCDNLEQNWPVGNRSRFLYSSGTHASSLHPPSALSSGYSSVNQSCASSAGTGSQRSRSPTPDQFETLREESPLRETKKFGYQLGESCSSKGYGLERGEELVVCGGGDRHPSNSPVRGSPVFFLESDDESSGEWDGGDRLGSLKTRNGLKKSLKELEIRYSDLEIDSKVGVGPNGPVYRGRWHGDVMVHTRKASQREEVEEFRKEVFLLSMIRHENVMLFMGACFEPPNLAVVVSLRKCLSIHNHLHCQESRWSMATRLNIMLQVAQGMSYLHAKCITVPSLRTMNIFLESKVKLCINDYTCLHHQVKRGGYGSVPQGHLTYLAPEVISKVDVDLSSGRILDTTVRTRKMDVYAYGTVMYEILTDKWPFANLCPETVIWMIGKGLPHSLTKVKGPDSVKELIKSCWSHDPHQRPGFVHITQVLKQRNISTNCISRRHSISEPEKMQYVGKFTDYCPIKRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HD54</accession>
    <name>A0A6S7HD54_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">WD repeat-containing protein 76</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A055067</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the WD repeat DDB2/WDR76 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004296">
        <property type="protein sequence ID" value="CAB4002236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HD54"/>
    <dbReference type="OrthoDB" id="9890280at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000001">
        <property type="term" value="P:regulation of DNA damage checkpoint"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050853">
        <property type="entry name" value="WD_repeat_DNA-damage-binding"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14773">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 76"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14773:SF0">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 76"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4002236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29256" checksum="7615286C9202644F" modified="2020-12-02" version="1">MCFHPTRNDLMSCGADGTFKRADFNTCVFDEIYASNDRGINSFSYPYNSRETFLLAFTDGHMTVLDTRESKSKNTSHLCHTKAIKCIDCHPANEYLFCTSSADATVAIWDLRRIKGMKSKLGTFQGHNRSVTSAYFSPLDGKYVLSTSWDDTVKVLEQTSSSKLEVKRNFRHFNQTNRWLSAFKATWDPRNGRGFVIGSMLANRRIQFYHVEQRTKAPLLEMFNENFTTIASTNVFHPSKNIIASGNSSGKVFVWSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIF4</accession>
    <name>A0A6S7HIF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062006</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004806">
        <property type="protein sequence ID" value="CAB4004089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIF4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="135"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="452" mass="50780" checksum="1E52851642CFCFDA" modified="2020-12-02" version="1">MENSAEEMTVKYVCAVCEFLVEAIRCQHEHTVTTQLGDRLAEFYRSLFTQRDGILPVQQIRPDLQAGVPANGNRRSGTTTTQNTAATTTTTATDNPTAPKRRRVRTGRGGPGIARKCVVTERQKHRRRQKGMANAPPPAPSPPTLPPTPPPTQPQTLPPPPPPRAQTPPPTGEPSRKTPRAQVLDEFNKKKRIENFKELAGVTDKEGYDPHELVLWKKDLRGWQLLEESFEEPLRDKWRALRSMPKIASDPRLIDAFFEFASLANGFANQAAHMTGYLVQEVLQVGDQNGFAPEQVLDDLVALLDAKSYAMYCRHLEECKCGACEAILQYDDDCGQGEVKGRPSHCVRVEPWAQMVRKFSRGLSGTTLRNCEYFFASTPKMSPPMLSLATSTDVQACTRRYMKWYLQGLQRITRTTRSSGSDALHLSIYVPRWPRCPAILSQCWMVTLTIWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJW9</accession>
    <name>A0A6S7HJW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041116</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002598">
        <property type="protein sequence ID" value="CAB3995107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJW9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="115"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20889" checksum="426FA6140C7DA019" modified="2020-12-02" version="1" fragment="single">FHEEDVAGQYDELLLIWDFDVDVLLSTTAMPLAPNYPPDNDDDENSGTCPLLDITRTTCSCSRFPIIGKVLIDLAVFKVPETQMPNNFPPDLDDEFEDQLDEVLEQRLPDIHVSDIDEQDAKQEQNADLEQNDEQEIDEAEQFAELIFMKGTTFHGHFQEALHACKQLMLEGNTPEGHVSHCRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HM84</accession>
    <name>A0A6S7HM84_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sex-determining region Y protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Testis-determining factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A013316</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Transcriptional regulator that controls a genetic switch in male development. It is necessary and sufficient for initiating male sex determination by directing the development of supporting cell precursors (pre-Sertoli cells) as Sertoli rather than granulosa cells. Involved in different aspects of gene regulation including promoter activation or repression. Binds to the DNA consensus sequence 5'-[AT]AACAA[AT]-3'. SRY HMG box recognizes DNA by partial intercalation in the minor groove and promotes DNA bending. Also involved in pre-mRNA splicing. In male adult brain involved in the maintenance of motor functions of dopaminergic neurons.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus speckle</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SRY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005368">
        <property type="protein sequence ID" value="CAB4005956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HM84"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016607">
        <property type="term" value="C:nuclear speck"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007548">
        <property type="term" value="P:sex differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd22004">
        <property type="entry name" value="HMG-box_SOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.30.10:FF:000002">
        <property type="entry name" value="transcription factor Sox-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050140">
        <property type="entry name" value="SRY-related_HMG-box_TF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270:SF161">
        <property type="entry name" value="SEX-DETERMINING REGION Y PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270">
        <property type="entry name" value="SOX TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0010">Activator</keyword>
    <keyword evidence="5" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="4" id="KW-0221">Differentiation</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0726">Sexual differentiation</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="HMG box" evidence="14">
        <location>
            <begin position="14"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="218"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="223"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00045821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4005956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="31530" checksum="9374D385E7476C93" modified="2020-12-02" version="1">MTSSVPSDELGEKIKRPMNAFILWSRERRRELANEDPNMHNFEISKRLGIEWNRLDAKEKKHFYDEAQKLKEEHRKNYPDYKYHPRRKPRRRFSPINPSPQYRMAYYLPPECVEKGYPYQPGYPAYPRHHWFTNTMLPSIPTPDTPFLHDMRYYTQPHLVMNGGVPAAYYGIHDIPSSLPQQREATIESKECPMEMLSRFTPSGLIKREELLRRAAESSLEFKTGKTSEEETSKHSGYHRHMSSAHVCLGCQGGVSTFYQGIRSSTVASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPY1</accession>
    <name>A0A6S7HPY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086826</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005802">
        <property type="protein sequence ID" value="CAB4007454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HPY1"/>
    <dbReference type="OrthoDB" id="5989453at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF1">
        <property type="entry name" value="TESMIN_TSO1-LIKE CXC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24370" checksum="16CBD079A194347C" modified="2020-12-02" version="1" fragment="single">MSDQDKTDWSRCVVCQELYKKADSLNERADQNENEISPESIVLAELVSYIEESSESVFKLADLAKVYQSHLQQLGRPSTARINSTRLKERILTHLPSLEDYSEGRDVYLAFREKLGKIIRGAHVVDSDKEAIHLVKAANIVRKDMLTTTNTFNGSFDANCQENSVPKSLLSLINMILYGPNIETQSCNPTANQPGVTIAQLLQYNCYARRRGTKQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWU9</accession>
    <name>A0A6S7HWU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003196</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006369">
        <property type="protein sequence ID" value="CAB4009187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWU9"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15845" checksum="B98E54EFE5B146AC" modified="2020-12-02" version="1">MVLNWFRDYLNNRTQKVVIEGVCSGWTHMTSGVLQGSTLGPLLFVIFINDLPNAVPQTTKVALYADDTKSFRGITSEGDSCDLQQALSNFSTWSSNSNISFNESKCKTMTVTRKKQPIPFIYHLDLFPINKEKKKKISVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWW3</accession>
    <name>A0A6S7HWW3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006899">
        <property type="protein sequence ID" value="CAB4010775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWW3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="97" mass="10866" checksum="D149C6CAF08BD52B" modified="2020-12-02" version="1">MFKESIKFLAHFTPHSFRTYKLNKGLVIKKLCFKECRKLESLGKFVACGKDETAVKCRGASQMYNGKGCKINSCGFGEGNDFSGKIEAICCKETEHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXI7</accession>
    <name>A0A6S7HXI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018158</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006228">
        <property type="protein sequence ID" value="CAB4008783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXI7"/>
    <dbReference type="OrthoDB" id="427480at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18468" checksum="E68599E13C46F73A" modified="2020-12-02" version="1">MDVGEYYGIFSCMLAARTWNTVVSGMKRTPYSQNEMQELRNSVSMYLTDISSILNRVPRQLLLILKTNDLLRGIDHQLETSKTSRSFVTMSKCCAEAVAKEELKTCRTWCERFMVYGRWSVDSARIALYQVSVQDFSVSTEVLASVATNLVSLFAISMLFGIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I642</accession>
    <name>A0A6S7I642_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Tyrosinase-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A079408</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007794">
        <property type="protein sequence ID" value="CAB4013186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I642"/>
    <dbReference type="OrthoDB" id="6132182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1280.10">
        <property type="entry name" value="Di-copper center containing domain from catechol oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008922">
        <property type="entry name" value="Di-copper_centre_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050316">
        <property type="entry name" value="Tyrosinase/Hemocyanin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002227">
        <property type="entry name" value="Tyrosinase_Cu-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11474">
        <property type="entry name" value="TYROSINASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11474:SF126">
        <property type="entry name" value="TYROSINASE-LIKE PROTEIN TYR-1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00264">
        <property type="entry name" value="Tyrosinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00092">
        <property type="entry name" value="TYROSINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48056">
        <property type="entry name" value="Di-copper centre-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0186">Copper</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyrosinase copper-binding" evidence="3">
        <location>
            <begin position="72"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4013186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="38458" checksum="962A340593AA592C" modified="2020-12-02" version="1" fragment="single">MPHREFEGNKIKLEGIRNEFLSILILPFYGHLAAESPCEHRIRRDIMSLSREERRRYIHAVKAMRTDPRTSKRYYDLGHVHVDHFCKVLHCKVFFLPWHRWFILQYENLLREIDPNITLVYWDWSMVMVNPFDINLWDDNEWSFGGDGIGVNHTVITGPFKEPEWQMIPPYGPDADLQLRRYLHFTYPAPGIASALHLAILLKLKPHEFQEWLTIFQSWHDNVHNKAFGWESTMSNTYSAWTPEFFLHHTFVDKYWSEWQEQGYDYKYISFYMKQTRYMQGTHYLPRDLADLKYQEGNVCVTYQKSLNDWIHKMLRSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I8K4</accession>
    <name>A0A6S7I8K4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048791</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008135">
        <property type="protein sequence ID" value="CAB4014066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I8K4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="54" mass="6338" checksum="ED8730578D137D1C" modified="2020-12-02" version="1" fragment="single">MQHCLQISEDCLLQHIQREHYQAVIWKRETTPIIDAPSPTDHGWKINEEGNIDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ID75</accession>
    <name>A0A6S7ID75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Growth differentiation factor 6-A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A011479</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the TGF-beta family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004782">
        <property type="protein sequence ID" value="CAB4004002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ID75"/>
    <dbReference type="OrthoDB" id="5987191at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005125">
        <property type="term" value="F:cytokine activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008083">
        <property type="term" value="F:growth factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.90.10:FF:000001">
        <property type="entry name" value="Bone morphogenetic protein 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.90.10">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029034">
        <property type="entry name" value="Cystine-knot_cytokine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001839">
        <property type="entry name" value="TGF-b_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001111">
        <property type="entry name" value="TGF-b_propeptide"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015615">
        <property type="entry name" value="TGF-beta-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017948">
        <property type="entry name" value="TGFb_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11848:SF263">
        <property type="entry name" value="PROTEIN DECAPENTAPLEGIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11848">
        <property type="entry name" value="TGF-BETA FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00019">
        <property type="entry name" value="TGF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00688">
        <property type="entry name" value="TGFb_propeptide"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00669">
        <property type="entry name" value="INHIBINA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00204">
        <property type="entry name" value="TGFB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57501">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00250">
        <property type="entry name" value="TGF_BETA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51362">
        <property type="entry name" value="TGF_BETA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5 8" id="KW-0339">Growth factor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="278"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="284"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="295"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4004002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="423" mass="49059" checksum="3D74CE0CC3CE9FCB" modified="2020-12-02" version="1">MGSLLRILAISRTRFAWSVLRTILFVAVIKSLDARRLQTSTGPKYAKLHGPFNGVKNRDHFASEETTRQMLNVLGMDELPKPRQGIIPHEYMIQIYEKMSRRKPRANGVNTIRGFVDVGNDDSKGRMKFHQIYAFNISALPSSEKVISADLRILRLPTRLQWKYAWAHGTQYRAKLYFKKIVAHVWNGQIYTHAQLVLLDSVLFDIKDKHSENWKVFKVLNALRLWKNDSNFVHHLELQVESVRTGYLMPAYAFGLTDKGRPHYKRALLVTFTDDGKTPETNGKRNKKSRKKKVELKSEEESTNRVKRSIKRRKRIKRKPLCNRKKLYVDFTLLGWSEWIIAPRGYNAYYCQGVCKYPIPEHLKPTNHAIVQTTVHSSDRRRVPPACCVPHKLSGLGMLFLDRGDSVVYKKYENMIVESCGCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IEY9</accession>
    <name>A0A6S7IEY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067255</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009569">
        <property type="protein sequence ID" value="CAB4017494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IEY9"/>
    <dbReference type="OrthoDB" id="1292175at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="36629" checksum="968830DB93D3612A" modified="2020-12-02" version="1">MPDTTPDVSHLDQISLIIRHVDEQFQIYERLLKISEINDKTGDGFAAKVISMLKDLQLSTAGIQFQCYDTTASMSGAYNGAQAKLSERLGWTIPYITCLGHKTNLCVEHSCKALLMIEEFFTTLQDLYNFLTRSTSRFGKLKGNIDALQEGLVMKNLSKTRWIGRAESIRAVWVSYEIVIDTLDEVRNCEDSDRDAIKTASNLSDRIKSFEFYLSMLFMKNIMYKTKIVDLEVQEIDKDILASLDVMCQTRDAMIRIWEDDLGLDGIVTAAVENCNSFGIDAEYEFSKKHVHDDHPDALTRTQTMLMYHYSTNITDKKCSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IUE4</accession>
    <name>A0A6S7IUE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067192</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012260">
        <property type="protein sequence ID" value="CAB4022994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IUE4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="177"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="359"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="511"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="198"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="255"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="284"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="359"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="393"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="430"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="450"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="612" mass="68653" checksum="58E9810FAE23200B" modified="2020-12-02" version="1" fragment="single">YGIERIASDIQAVNLDGVVHLFKGVSAEEVARPTGPVDLLIGYEYAGFHPQLERRNGHLLLLKNQFGKCIGGKHPSIKETHQTSALTSARAYHVNAINVEDIYNIEGLGVACSPCCGGCKCGKCPKGSNDYTLKEERELKLIESKLTFDDEEKKWTAEYQWIRNPQELPDNRRAAMRDANEEELNSEIEQNNEITSDVEERQVDEERPHVGQAHESHESREVEETQRLVKVNGEGSRSSERNEIRRRQAKRVVEPSNTTRQIVTQAGEKRKGSPDVQLLGRKRKDTDGRNEQKNVVDKKETAARDVIARQDIDTRKNDVRVQNKRRVVRAVGDTNLIAERNIGATSDFLITKVIRAKNDGGARNDEKAKESSGTRMSAEQRNEGDMTSNTTEITRKDVAAHNNSDSKEDAGSVLSGEESDNSNTTHVHIRNGDLRNSDARESQKGGGKTLTDTSRNNEASSKAIRKSLENYSFSPCVIKDTPVEMEGFETKRKFWLHDVKVRGLIETSSDESDSEMVAGHEERVGSTRLSMTDTRTDVRSGRDVRGARMDWRLGRVPKFKSGNDGKVRNVKVQYKNPKSGEPINKYGGQDYVTVERAIHRLVVILPADHDDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZT8</accession>
    <name>A0A6S7IZT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020938</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006935">
        <property type="protein sequence ID" value="CAB4010861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IZT8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="247"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="129"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="151"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="261"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="291"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34300" checksum="E6D43DF234737484" modified="2020-12-02" version="1">MWNILSDDPVESDDEDDGQEFVLTKTIKKKTGRRTKWTEEMLNDFIDIIVSSEYYKKKLIFMNTKTQRNGEMYEAILKQLEKRCVKRGEKVPFTAQQLTSKFKKCVGMCKQAALTIKSATEIAIEPSALGNTSGNSTEEVGDSDIMESEDTATKGSDEHEGKDKLFIPIKPNKTKKKEDVAVEALQVLNKVVERDHTKELIDFMKDQMEKSQEHELKVLKMNISSESIPQPRNVHPRGIESVYQQPHMPTHCHWNSGSTFQSNLQPSPNQSRPSSSLSSSSSLSFNNTEPMAHEQEPTYHSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7Q0</accession>
    <name>A0A6S7J7Q0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030179</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007850">
        <property type="protein sequence ID" value="CAB4013342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7Q0"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="37409" checksum="A835030CFCEE5234" modified="2020-12-02" version="1">MKKLKLRIATQNVKSLIKRKHREYLAKVEDSLSSNPKHFWSYHKAILYRRTSPSTIITYDGATAKTASEKANLFNQYFSSTFSHPSTDNAVNEVTSSHSFPLKTDMLLSNITLCVEEVSDCLNSLDTTKACGPDGIPSRLLKECCQQIAPSLCTIFNHSLICGRFPSEWKSANVTPVHKKNSKEPAENYRPISLLSISDVLYLDLAKAFDSVDHQILVEKLKCYGVAGRLLDWLTDYLNGRTQRVVIDGAVSQWVPVTSGVPQGSILGPLLFVIFINDLLEFIPNGTNTALFADDTKLHRNISSLTDCEGLQQALSNINIWSQQSNMKFNSTVPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBY1</accession>
    <name>A0A6S7JBY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068312</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015320">
        <property type="protein sequence ID" value="CAB4028208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBY1"/>
    <dbReference type="OrthoDB" id="6782434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="18078" checksum="7A56EC7F0BD77932" modified="2020-12-02" version="1">MSTFTPAKDNSLFIGFVTKTQLCKLIEEGDISPALQNALYKSVRAFYVRTLEYAIDNLPLNDDLLENAKLVNFNRREYAELSEVEYFVNRFELLLSFQSPQEMDKLSEEFVEFQLLCDDDIRKQIYGKKPQLKLTLLTRRATTEWMLFGITFHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFF3</accession>
    <name>A0A6S7JFF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016215">
        <property type="protein sequence ID" value="CAB4029508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFF3"/>
    <dbReference type="OrthoDB" id="5100512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="2">
        <location>
            <begin position="3"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="205"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4029508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="612" mass="69633" checksum="87242DD76706B38C" modified="2020-12-02" version="1">MSLPRYPKDLAVIIVKAKGRENTFRDVTVQKRKVHDALVWLINNNPHYSELIINEDALNSLPENGVPPGLMTVDTDDDIVSDDNCSPDVGPPTDNPSEDIVYNDSTEMSSFLPVGEQQQQEIEAVRDQLSENEPMPWLSVENEPLNEYQVSHLATMAFPTLFPDGKGDPTNQGLLRDVPLQERIKHLLKFAEILMVNGYTVLPTTPRFFYWAFNMIQRKRILQQSGIFLKQNPGKAHLTINELREMAASNNANVFMSKVSRYVGNIAGTNAYWNRIGEELKAIITSVGAPTLFFTFSSADMHWPELHALFKADTDNELGDSTSHWFRYEYQSRGSIHCHGTAKLNNDPGLCQLTQTALKGFLAQKFKDENDCSDTTELEQGIEAGDNEHYRAKIVAKRNDSRLNNHQQLQLQGWRANCDSQVVIDHYACVEYLTKYAAKVIKKIVMKSLGARYYALKLHSSSFKVMPVSLNGSCRVHDAASIDEGESCTDYSLLDVYANREQYESSQNIINMNFVQFATTYKVDNNELTKLPENIIPRIFPTYSPNPKGPNFGLYCKYQLLRFKPWRTTQNNAWGDQEPTDEVLINCWHEFFPTPYGQSNVPDWFDKLQAVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLA8</accession>
    <name>A0A6S7JLA8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045833</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009516">
        <property type="protein sequence ID" value="CAB4017362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLA8"/>
    <dbReference type="OrthoDB" id="5967731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="403" mass="46927" checksum="C8B69B868469944E" modified="2020-12-02" version="1">MLPDLVYSYNHSVHHSIKTKPVDVTAENEKKVWYTLYDDLNVVKNVKYKFRIGDQVRISKMKRTFEKGYLPNFSKEIFTISKQMPCDPPVYKLKDLDGEELKGTFYEKELQKIIKEDDVYEIEKILKKRGRGNNPQIVGDTSAQLLRSIPVEGKYGDIITKTFTNIQYVPVQTKSFGDVKILLRNDTCDPVPFEQGKSRMLGLKRMELARFGEEMKWIKVEEIGEKGRLELIKIIHTVFEDVLKCNSEQLDSLLGKIQTILDSKTMSQNEESMKAKEKSEQGLKQLKTQYEKLLVEQEKLKDQINTVQSQNETTEDITITSESVTQQDKPQSAFLNMKTSMLHREFKIQGQIGEPGHKDKLAYQSLISQIEIGLQRVTQKRKLPMLLLELFRLVYNYEVIWRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLC9</accession>
    <name>A0A6S7JLC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Centromere kinetochore zw10 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084083</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019164">
        <property type="protein sequence ID" value="CAB4033336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLC9"/>
    <dbReference type="OrthoDB" id="534815at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990423">
        <property type="term" value="C:RZZ complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006888">
        <property type="term" value="P:endoplasmic reticulum to Golgi vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007094">
        <property type="term" value="P:mitotic spindle assembly checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046362">
        <property type="entry name" value="Zw10/DSL1_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055148">
        <property type="entry name" value="ZW10_C_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12205">
        <property type="entry name" value="CENTROMERE/KINETOCHORE PROTEIN ZW10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12205:SF0">
        <property type="entry name" value="CENTROMERE_KINETOCHORE PROTEIN ZW10 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22766">
        <property type="entry name" value="ZW10_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ZW10 C-terminal helical" evidence="1">
        <location>
            <begin position="5"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="10043" checksum="25E92FDF959DFCD3" modified="2020-12-02" version="1">MGIFIQKSPEVFQIPAEEIPEAVDVWKKFLELRCIIDSSLQNIEDRWKDGKGPLAQEFSCNEIRGLIRALFQNTDRRANVLAKIRPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXV7</accession>
    <name>A0A6S7JXV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008442</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019851">
        <property type="protein sequence ID" value="CAB4034130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXV7"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="218"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="27845" checksum="7980C75B78A6012B" modified="2020-12-02" version="1">MDANSPPWIDREVTHFIRIKYSVFFIRKKYSVLKKYRKCRTEYRKRKLCQISQIIKYLVKRKHRDYLLKIQDSFRDNQRLFWSYHKAVFDHRSTQTPAISYKGKLAETTSDKAELFYCYFSYVFQPSKYNQHQASKFSSSQLRIDAQLLEMDFSEHNVANCLRNFDTSKASGPDGIPVRFLKECSQKIAPNLCSFFNLSLQSSWIPSEWKSADITPINKEDSKEPGENYRPISLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZD6</accession>
    <name>A0A6S7JZD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065671</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022903">
        <property type="protein sequence ID" value="CAB4037277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZD6"/>
    <dbReference type="OrthoDB" id="413122at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="242"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="527"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="312"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="347"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="380"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="395"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="420"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="474"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="527"/>
            <end position="542"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="579" mass="67037" checksum="227872CBF2B37EA4" modified="2020-12-02" version="1">MHIAHRKIKQLARSTENEWYRNSMYSVSLLVNARTLHKFVTILEDTVVCLSCKKQTKMCLVSFRKHSGRLNHMEKESNINLKDFETEKESVTKQNQEDDIENETKPGNPLVDYFETKLSDIEKRVEKDSMQAPDALADNRSYSPQFLTFIKKYLTEMPLWSGVLLGRLDRYRKDPCTTKEREVNNFLSFSSANTKSEGYIEGAMRNLKQEDFSGRKRLRADTFVHENYSRIRRRLRDYEKWGKKDPETPKHNPRLGQFQQSPKIPLSSKPDFKKGKSKRKIHPSCSETHRKPNQRVNACSYDEQKPDKMPSKINTGVSSEQENASRGVKCAPKPVLKNEGPAKSRLTRKEKTENGKKWTECIYIHDGDEEDNAERDISTKRNLSSTDESINSRNENSHDAEEKLGKKDPGMPKQNPIVGQFQQFPTIPLSTKPDFEKIKSKRSVHPAGSESHIKKTKKVNACSYNEQKPGKMSSKMNTSVSSEQENASRVVNCTRKTVLKSKGPPKSRLTRRERIENRKKCTEWIYKHDGDEEDNDRRDINTKRKSSTQSSIKSKRKKLNKLINSFDDEDDYLEKFVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9P5</accession>
    <name>A0A6S7K9P5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032701</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012999">
        <property type="protein sequence ID" value="CAB4024382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9P5"/>
    <dbReference type="OrthoDB" id="8046321at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12774" checksum="A3348C69D45A1CF8" modified="2020-12-02" version="1" fragment="single">MFADDTNVSFAADSLEELPSVINSELERLKSWLITNNLSLNIAKTEFMTIGSRQRINATQGSMTIKLHSTEINKVDTVKSLGVHIDKHLSWSTHIVKITKKIASAIGALKRIRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAE3</accession>
    <name>A0A6S7KAE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064222</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009539">
        <property type="protein sequence ID" value="CAB4017418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAE3"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="372" mass="42799" checksum="66286D307C8EF6AE" modified="2020-12-02" version="1">MTHVYDSWDRTTDENYETYVLGGFNKNWFNQEDSALLRSYADICGLTQTVSEATRTVNTARSTTTTCLHLIFTNSPEQNMSNCKVISVGFTDHDLTVLSIKSKIPKGPSKVVYKRSYKHFSAEKFINDLKLILFWLVESSDDPNEALDTFLNLFRDIADIHAPIRKYTVKSKPAPWITQNIRDLMLMRDAAKREAKVSGFPSDWAVYRKLRNHVVKVDRESKRAYFLEAINNTKKDPKSMWKTINNLLGRSNCPILSIPTYAERNGEIYTKPKDIANHFAKLFNEKMKKYRFEMSNPIDVEYVTKSITEIMTGKNCRFEFSSLSLLEVHSCLAKLPNTKVTGIDGIDNFLLRIASNIIAEPIRYIFNCSYAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBT2</accession>
    <name>A0A6S7KBT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013408">
        <property type="protein sequence ID" value="CAB4025092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBT2"/>
    <dbReference type="OrthoDB" id="6114255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="30382" checksum="3EF3483577E858E6" modified="2020-12-02" version="1" fragment="single">YVRKWLEIPISGTLSNVYLTSNKFAQCQTVARNALKTSPNHSIKDLWKTTSESKNIQYDVYTSTKEVLKTFTSGQEDKLQNHLILQGSFFSNVIKFSLSKLNGIWSKSQSNLPKNIYNFTIRYINNSLPTRKNLTKWGILSNSDCSFCLNPETLLHVVAGCQTYLPRFTWRHDSVLNFIAQTLQPVNNSNLFVDLPGYKSPSIVTGDTFRPDLLLSINLDCLYILELSVGYESNLQTNVDRKRRRYEDLITQQKKQFKSVKFVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDS7</accession>
    <name>A0A6S7KDS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074899</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014154">
        <property type="protein sequence ID" value="CAB4026363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDS7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21420" checksum="6DE6DC2AE3444604" modified="2020-12-02" version="1">MAGMSSKRCVDEQLKNWTAEELKAQGVGIYPEREYACEQCRGVAIFDDHHDALCDLTPEQFAKLRVMAEDDDDDDERGERLKNYKENYAETMTPLEYWLYCREQEGKGDFTPTTFADDDEEDDDDDDDDDEEVEVVATEKKTWFYPNSEGLYYCDICGNDPDQPCEHTSPPCEDLGHLFGSNCKTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEY9</accession>
    <name>A0A6S7KEY9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ZMYM2-like/QRICH1 C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A034869</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028193">
        <property type="protein sequence ID" value="CAB4041364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEY9"/>
    <dbReference type="OrthoDB" id="5988392at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021893">
        <property type="entry name" value="ZMYM2-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12012">
        <property type="entry name" value="DUF3504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0832">Ubl conjugation</keyword>
    <feature type="domain" description="ZMYM2-like/QRICH1 C-terminal" evidence="4">
        <location>
            <begin position="12"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4041364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13401" checksum="FA19037E89F2D241" modified="2020-12-02" version="1" fragment="single">ETDHKLNCRELTTAEEDKFFELGLFGKHDPEVLQRTVWWVLSLHFGFRARDESRKLKWGNVSNSKDPETGSELLLWKAERGSKTRHGDGQQRKQPTTNGVLFSYIVHFPSIDQMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KM38</accession>
    <name>A0A6S7KM38_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033793">
        <property type="protein sequence ID" value="CAB4044014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KM38"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12661" checksum="D75B1982BA1DACCF" modified="2020-12-02" version="1" fragment="single">MATRSHASKRAAQISTNTRSKTPKKPVLEKAKKTINANKEDRDNLHEEKPMNVENMFETIMSKLEYAYAEVETLKKENAEPKKSDSETKERLAKVEEQNSALNSRVIDLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L785</accession>
    <name>A0A6S7L785_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase</fullName>
            <ecNumber evidence="7">3.5.1.26</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Aspartylglucosaminidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glycosylasparaginase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A079124</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Cleaves the GlcNAc-Asn bond which joins oligosaccharides to the peptide of asparagine-linked glycoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H2O = N-acetyl-beta-D-glucosaminylamine + L-aspartate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11544"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15947"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:58080"/>
            <dbReference type="EC" id="3.5.1.26"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Ntn-hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.26" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020020628">
        <property type="protein sequence ID" value="CAB4035023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L785"/>
    <dbReference type="OrthoDB" id="188713at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005764">
        <property type="term" value="C:lysosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003948">
        <property type="term" value="F:N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.20.30:FF:000003">
        <property type="entry name" value="N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.30">
        <property type="entry name" value="(Glycosyl)asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000246">
        <property type="entry name" value="Peptidase_T2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188">
        <property type="entry name" value="L-ASPARAGINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188:SF6">
        <property type="entry name" value="N(4)-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01112">
        <property type="entry name" value="Asparaginase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00050421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00053295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00066729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00078726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00079301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00080645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4035023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="21440" checksum="75413363A24E3842" modified="2020-12-02" version="1">MWKSWKENKCQPNFWKMVHPDPKTSCGPYEPDNSKKYSDGSQDASFATEHNHDTIGMIVMDGAGRVAAGTTTNGANHKIPGRVGDSPIAGAGSYADSEVGGAAATGDGDIMMRFLPTYQAVENMRNGMSPGRAAEDAVLRIAKHYPNYSGAIVAANVDGEYGAAAHQWTTFKYSVCSPMLDPHCQYFPVKPVSHHTQTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LE54</accession>
    <name>A0A6S7LE54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107347374</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022181">
        <property type="protein sequence ID" value="CAB4036573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LE54"/>
    <dbReference type="OrthoDB" id="5954791at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="140"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="394" mass="44573" checksum="05E50F6BFEF3BFB2" modified="2020-12-02" version="1">MFNTQQQFTIKAEKNKEFDKSCLIDTFNVGSGNIADCLEHCLENCRCQSFQIRQNTECQLCSSHKKENSSLLHDKDDCVYAMYEMRHLTETFQKLEGQCSGMSCSMKYNCCQQSDLCPNNKICKPINSQEQLWKRFTCECPEGYHGDNCDQPITSCQEYGRGSRKSGMYKVVDSVGDPLYEVYCHFDSDGAWTLVHSCSFANANGSDSQFKKSLSDNFAVGENGLEWSGYRLRKTRMESIKESSTFLQFTCDYEKHRDMEKLDYVQIRLGNISQDVLELNNNHTSYVTIGEGHGKIGGYDLNGCQVKLHQRPKRPLHVHIRHSIPDGKCKVSANDSSCTNGDKYFDNYASPSDCVKKVHRCVQNANSTTQLWFGMREVRNDTSSLGSSGGSSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LMR0</accession>
    <name>A0A6S7LMR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045297</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024932">
        <property type="protein sequence ID" value="CAB4039083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LMR0"/>
    <dbReference type="OrthoDB" id="2527451at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="19255" checksum="828464DD844DF524" modified="2020-12-02" version="1">MYTRAVAAFRASGSIHPVCPTHQKFAKLCVVKDTMKDTYGRPFFVCSERKNPCKFWQWGDVFEGPRPLCQHGMVCCERKVKKDGPNQNRLFYCCPKEDSCGFFEWKQQGPRVTNTGIVLFSNPLQYQYMIEETGKTFNSSKSNTKESYDEFRRFGLTSELDKIDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LNH4</accession>
    <name>A0A6S7LNH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077643</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021183">
        <property type="protein sequence ID" value="CAB4035589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LNH4"/>
    <dbReference type="OrthoDB" id="8931242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16246" checksum="83BE685A116588A8" modified="2020-12-02" version="1" fragment="single">ATTSHVGNQNQSPAEELRAIFRRGTSSQQQQDINATIPRFNSRFSYQSRGRRNATRRLNSNEGKQKTTGKRCGQTPAKQSFCREVVLLRSPDDTKGVRGHSKAALHRAGNVISAFKFEKSWCFSTVCEELNKAFPQLGCINTMPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LT92</accession>
    <name>A0A6S7LT92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034754</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029726">
        <property type="protein sequence ID" value="CAB4042229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LT92"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23032" checksum="6F3F38D73C35CEEE" modified="2020-12-02" version="1" fragment="single">MAVAQRALHLICMLLYLYLCFKNLTRCKKCNSLDVYNGNVFYSSNIAAKPNIASFVRLPRQPRSCSGSASLTPNSTRVIVACRLLTKASISLLLIQMSNDVESQPGPVVDRKGIKLCHWNIQHLTDSKFEEIRNLLTCPSKELFGLDILILSETFCTEKIPETFYSIPGYKVYRKDKTGKSGGGLCVYVKNSVQAERRIDLETKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DDL2</accession>
    <name>A0A7D9DDL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LINE-1 retrotransposable element ORF2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079763</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000475">
        <property type="protein sequence ID" value="CAB3982174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DDL2"/>
    <dbReference type="OrthoDB" id="5968622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd15489">
        <property type="entry name" value="PHD_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00628">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="194" mass="21949" checksum="A5A1D1EDAF7D5E28" modified="2020-12-02" version="1">MMSRNKYGWLFTLVLFLLCIGQDQDIRVIGGKEDRDGGLNGITIVYTFEFNATILSGKYHTVHGLLRKGYMKTRIRFYANSVAGFQLTKLLECGDICPNPGPKAKSSQRLKCVHCERTIACNHRTVSCKDCGLHFHFKCAGLTLRDYHKMEQNLKQQWMCTACLFSVLPNNLDMSMVSSSSNSISDKYDDLDQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DG88</accession>
    <name>A0A7D9DG88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Src substrate cortactin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052923</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000789">
        <property type="protein sequence ID" value="CAB3984813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DG88"/>
    <dbReference type="OrthoDB" id="5971719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="82" mass="9411" checksum="73C6FCD15EA44947" modified="2020-12-02" version="1">MWRSAAGHNVQLDNADDDDWDTDPDFVNDVSEKEQRWGAKTVEGSGHMESINIKDLRQNVTQDHQKIKKDEASKGYPFDVHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E0B0</accession>
    <name>A0A7D9E0B0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">SPC3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A000731</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Probably involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S8 family. Furin subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003347">
        <property type="protein sequence ID" value="CAB3998414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E0B0"/>
    <dbReference type="OrthoDB" id="6017542at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016485">
        <property type="term" value="P:protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07655">
        <property type="entry name" value="F-BAR_PACSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04059">
        <property type="entry name" value="Peptidases_S8_Protein_convertases_Kexins_Furin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.260:FF:000006">
        <property type="entry name" value="Proprotein convertase subtilisin/kexin type 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.850:FF:000001">
        <property type="entry name" value="Proprotein convertase subtilisin/kexin type 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.200:FF:000021">
        <property type="entry name" value="Proprotein convertase subtilisin/kexin type 5a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1270.60:FF:000009">
        <property type="entry name" value="Protein kinase C and casein kinase substrate in neurons 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.60">
        <property type="entry name" value="Arfaptin homology (AH) domain/BAR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.850">
        <property type="entry name" value="Peptidase S8, pro-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027267">
        <property type="entry name" value="AH/BAR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031160">
        <property type="entry name" value="F_BAR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001060">
        <property type="entry name" value="FCH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034182">
        <property type="entry name" value="Kexin/furin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002884">
        <property type="entry name" value="P_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023827">
        <property type="entry name" value="Peptidase_S8_Asp-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022398">
        <property type="entry name" value="Peptidase_S8_His-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032815">
        <property type="entry name" value="S8_pro-domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038466">
        <property type="entry name" value="S8_pro-domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42884:SF23">
        <property type="entry name" value="FURIN-LIKE PROTEASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42884">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00611">
        <property type="entry name" value="FCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01483">
        <property type="entry name" value="P_proprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16470">
        <property type="entry name" value="S8_pro-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00055">
        <property type="entry name" value="FCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103657">
        <property type="entry name" value="BAR/IMD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54897">
        <property type="entry name" value="Protease propeptides/inhibitors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51741">
        <property type="entry name" value="F_BAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51829">
        <property type="entry name" value="P_HOMO_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00136">
        <property type="entry name" value="SUBTILASE_ASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00137">
        <property type="entry name" value="SUBTILASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0165">Cleavage on pair of basic residues</keyword>
    <keyword evidence="14" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6 15 16" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 15 16" id="KW-0645">Protease</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 15 16" id="KW-0720">Serine protease</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="8" id="KW-0865">Zymogen</keyword>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="307"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="980"/>
            <end position="1003"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="17">
        <location>
            <begin position="312"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="17">
        <location>
            <begin position="324"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="17">
        <location>
            <begin position="334"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="17">
        <location>
            <begin position="350"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="17">
        <location>
            <begin position="360"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="17">
        <location>
            <begin position="980"/>
            <end position="994"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="13 15">
        <location>
            <position position="526"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="13 15">
        <location>
            <position position="577"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="13 15">
        <location>
            <position position="754"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="18">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00055784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00076619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR615500-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU003355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB3998414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1068" mass="120092" checksum="A77EA3B9D2D29A3F" modified="2020-12-02" version="1" fragment="single">MANVTGNENGQAHSEGYGVVSNFNFWEVNCYKTTIKRMEDGSKLCDDFMKMVNERAEIETMYFNKMKSWAKKWEDNHKKGPEYGALKTAMFGIMIEGDQLADVHYELREKLVNEVHQSVNQWKKDNYHKSLMSFKEIKNAEDGFSKAQKPWARRLDEVNKCKKTYYNSCRNHDNGKQQQLEGKGKGMSEEQLKKLQDKVEKFGEDVKECKVKYEDALRDLTGYVPKYQDDMKYQFNKCQEFEELRKSFFESLLLGYHKAVTREEYNTRMTAIYQHLLETLKKTDTKHDLEWYASIFGTDAKLDVPEYEEYDPSTSNQSSAANIQDDKGKDDNTSAKQNKSGVCTTLPSKTKAKGQKRSRAKDEKLGKEPKLTKGEWQQIHKFEDALKDEDGKLFYTDSWAVQFTDPAEVELADRIAAKHGFVNLGKVGSLQGYYHFKHIGNSFRGKRSTHEKTTMLMSEDEVLWAERQHVLNRNKRDGVPTDPKFQDQWYLFNQGQSSGPAGVDANVMPVWRSGITGRGVVVSILDDGVDSTHPDLHDNFELLVHICCVLKDQKASYDFNDMDADPHPRDTDPDNCHGTRCAGEVAAKANNSICGVGVAYNANIGGVRMLDGQATDVLEGSALSFQSNYIDVYSNCWGPKDDGKTFGKPGKLAQEALKQGALKGRDGKGNVYVWATGNGGLTDDDCNCDGYTTSIYTISVGCIGDHGLSAYYTELCSSTLAVTFNGGSHREKEENKIVTTDLHHKCTEEFKGTSSAAPLAAGMIALALEANPNLTWRDVQHVIVESAQVTSPVDEGWVSNGAGYHFNHKFGFGRLDAYQMVKKAKTWKNVAPQKLCKGPSSDTQQEIPAGGTLSVTIDTIACANTKDDIEKLEHVTLTMSFQHRRRGQVSIDLFSPSGTRNEMLSTRRYDDSRNGLHDWTFMTVHNWGENPKGVWIMNVTDNINVMGKHLNAGTFVQHDTSKQAADVEDLEQEVIDDQKKTEELERRKTGKDTTRPAQENSRYPEGVKKTHNLAVPNRLELGKVDTKLDGLKIRGQSHSDRVLEGQNICLSALASVMVLMSHNREASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E1C8</accession>
    <name>A0A7D9E1C8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chondroitin sulfate ABC exolyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A086874</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002872">
        <property type="protein sequence ID" value="CAB3996450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E1C8"/>
    <dbReference type="OrthoDB" id="5950258at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006027">
        <property type="term" value="P:glycosaminoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.10">
        <property type="entry name" value="Polysaccharide lyase family 8-like, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039174">
        <property type="entry name" value="Chondroitin_ABC_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011071">
        <property type="entry name" value="Lyase_8-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003159">
        <property type="entry name" value="Lyase_8_central_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37322">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37322:SF3">
        <property type="entry name" value="CHONDROITIN SULFATE ABC EXOLYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02278">
        <property type="entry name" value="Lyase_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="Galactose mutarotase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49863">
        <property type="entry name" value="Hyaluronate lyase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polysaccharide lyase family 8 central" evidence="2">
        <location>
            <begin position="35"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3996450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="336" mass="37714" checksum="DF1213144B8F285B" modified="2020-12-02" version="1">MYGAVENDEQLTQNEDFRKLTRVRNDDAAFEKIKFNFTKSVFFYNSLIVCLGSNINSTNSEPYQTQTTLFQDKYTTSITVIYINGKMKLLKDDFSQILYDSAAILDTNGNGYYIPKGSSANIAISRQKSKAPNGKTPTEARYATVWLDHGINPVSASYEYAILVATDVAGIEAFQKAQISDSPVYEVLHKNSAAHVVRFTDKTASPSKTYGYSFFKKNVRLTEGPIRHVSAECIVMAQIDRVNFSNINISISSPDLNYNTSKVLIHSKDNGINEYFYMRSQPVNISAYLSRPVILDRVLVNGKPVEKSLYGHYIAVKPDDPQQPALKGREIVFKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E2S4</accession>
    <name>A0A7D9E2S4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A008623</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003569">
        <property type="protein sequence ID" value="CAB3999355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E2S4"/>
    <dbReference type="OrthoDB" id="6013509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043646983" evidence="2">
        <location>
            <begin position="26"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="208"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="224"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="344" mass="39190" checksum="67B081B6E07B38D8" modified="2020-12-02" version="1">MYCFRRHHYNKSVLIWLFLVKYWEGNEFCTDIFNLFNNHSNIIDESVVEYVHSVIRRHTKDGASEKTLADTMKAIFGCGLRQENFRSTFTPARNYVFSRVQLKYLHTRVAKILVSIFSKICSSPGESYLLPKSKGQPRDCTMFILPTLFGEKPVKSYMLPLGFQCEKKPDINSRCDYICVAPEDADWQIFEGCWHSFHKESANSSFVNGGNQDNLGVDVQTSDSDSDDDSNELECDNLGINTNESNIENTLNNINLSLMQLRPQSPSNTSVNSNEQCDVDSSTLLTNVQTTTNCSLRETRCTRESLDEEQINYCAPEILEHPELGLIDNAEEKNISSTILQTFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E6F2</accession>
    <name>A0A7D9E6F2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">histone deacetylase</fullName>
            <ecNumber evidence="2">3.5.1.98</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A020610</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the histone deacetylase family. HD Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.98" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020004287">
        <property type="protein sequence ID" value="CAB4002204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E6F2"/>
    <dbReference type="OrthoDB" id="1918432at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016581">
        <property type="term" value="C:NuRD complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140297">
        <property type="term" value="F:DNA-binding transcription factor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0141221">
        <property type="term" value="F:histone deacetylase activity, hydrolytic mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031507">
        <property type="term" value="P:heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.800.20:FF:000003">
        <property type="entry name" value="Histone deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="entry name" value="Histone deacetylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003084">
        <property type="entry name" value="HDAC_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000286">
        <property type="entry name" value="HDACs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10625:SF10">
        <property type="entry name" value="HISTONE DEACETYLASE HDAC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10625">
        <property type="entry name" value="HISTONE DEACETYLASE HDAC1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037913">
        <property type="entry name" value="His_deacetylse_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01270">
        <property type="entry name" value="HDASUPER"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01271">
        <property type="entry name" value="HISDACETLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="Arginase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0678">Repressor</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00061569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4002204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="47130" checksum="17EBAFBA91C3E404" modified="2020-12-02" version="1" fragment="single">MANVYPAGKKRVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANLEEMTKYHSDDYVKFLKTIRPDNMTEYTKQMQRFNVGEDCPVFDGLFEFCQLSTGGSIAGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLRYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDIRDIGAGKGKYYAVNFPLRDGIDDESYEQIFKPIITKVMEIYQPNAVVLQCGADSLAGDRLGCFNLSLKGHAQCVAFVKKFNIPLLMLGGGGYTIRNVARCWTYETSVALDLDIANELPYNDYFEYFGPDFKLHISPSNMPNSNQQDYLERTKQRLFENLRMIPHAPGVQMQRIPDDHVLGNDSEAEDEEEDRKPDKRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E7P0</accession>
    <name>A0A7D9E7P0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A037787</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004684">
        <property type="protein sequence ID" value="CAB4003629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF31">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 6-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="10"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="832"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="868"/>
            <end position="999"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1040"/>
            <end position="1509"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1561"/>
            <end position="1756"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1775"/>
            <end position="2158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="396"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="515"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="592"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="606"/>
            <end position="832"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="871"/>
            <end position="999"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1043"/>
            <end position="1154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1161"/>
            <end position="1253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1263"/>
            <end position="1366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1367"/>
            <end position="1376"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1377"/>
            <end position="1401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1418"/>
            <end position="1509"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1568"/>
            <end position="1735"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1742"/>
            <end position="1756"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1789"/>
            <end position="1983"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1984"/>
            <end position="1993"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1994"/>
            <end position="2038"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="2046"/>
            <end position="2150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2158" mass="246991" checksum="937FB3134FF3D75B" modified="2020-12-02" version="1">MVLHTEDKVPHTEKMVRHYEDRDLLSDDTVPHAEDKVLHSEDKVPHSEDKFPHSEKKVHDPEDKVPYAEDKVIHTEDKVPHSEKKANDSEDKVLHSEDKVPHSEDKDHPSDDKVPHSEDRVLHTEDKVPHTEKKVPHSEDKVPHAEDKVIHTEDKVPHSEKKVHDSEDKLLHSEDKVPHSEDKDHPSDDKVPHSEDWVLHTEDKVPHPEKKVPHYDDKDLHSEDKFPHAEDKFPHAEDKVLHSEEKVSQSEDKVPHPEKKVHDSEDKVPHSEHKVPLSEDKAPHSEDKDHPTDDKVPHSEDKVLPTEDKDPHSEDKVPHSQDKIPHSEDKVSHSEEKVPHCEDKVPHPEDKVPHSEKKVHGSEDKVPHSEDKVPHSEEKVPHSEDKVPQSEYKSPQSEDKLPHTGDKVRLSEDKVPHSEDTVVHTEDKVPHSENKVPHSEDKVTHSEDKVPHSENKVPHSEDKVPHSEDKVPHPEDKVPQSEDEVPHTEDKIPHSEDKFLTLRTRFLTLKVVPATEDKDPHSGDNVPRSEDKVPHSENKVPHSENKVLHSDDKSPHSEDKLPHTEDKVRLSEDKVPLSGEKVPHSDDKIPHSENNVPNSEDNQVSHSEDKVLHTEDKVPPCEKKVHDSEDKVPHSEDKVPHSEDKVPHSEDKRPHSEDKVPHSEDKVPHSEDKVLHTEDKGRHSDNKVPHSEENVLHTEDKAPNYEDKAPHSEDKVPHSEDKVAQSEDKVAQSEDKGPHSEDKVPHSEDKVPHSEDKVPHSEDKVPHSEDEVPHTEDKIPHTEDKVPHSEDNVPRSEDKDKVPHFEDKGPHSEDKVPHSEDKVPHSEDKLPHFEDRFLTLRTRFITLRTRFLTLNTIFLTLRTRVPQSENEVPHTEDMVPHSENKVPHSEGKVRHTEDKFPHPEEKVPQSEDKDKVPHTKDKVPHSENKVPHSEDKVPHSEDEVPHTEDKIPHMEDKVPHSEDNVPRSEVKDKVPHFEDKGPHSEDKVPHSEDKVPHSEDKLPHFEDRFLTLRTRFITLRTMFLTLNTIFLTLRTRVPQSENEVPHTEDMVPHSEKKVPHSEGKVPHTEDKFPHPEEKVPQSEDKDKVPHSEDKVPHTKDKVPHSENKVPHSEDKVPHSEDKDKVPQSEDKVPHSEEKVPHTEVKAPHSEDKVPHLGGKVPHSEDKQVPHSEGKVHHSEDKVPHSEDKGLHTEDKVSHTENKVPDSEDKNPHYEDKVPHSEDKTPHSEDKVPHSEEKVPHTEDKASHSEDKVPHSGGKQVPQSEDKVHHSEDKVPHSEDKGLHTEDKVSHTENKVPDSEDKDKNPHSEDKVPHSEDKIPHCEDKVSHSEDKVPHSEDNVLHSGDKVPHSEDKVPQSEGRHVPHTENKVPQSEYKSPQSEDKLPHTEDMVRVSEDKVPHSEDTVLQAADKVPHSYNKVPHSEDKVPHSEEKVPHSEENVHHNEDKAPHSEDKAPHSEDKVPHSEDKVLHTEDKVEHSEKNVHDSEDKVPHSEDKVLHSEDKAPQSEDKVPHSECRFLTLRTRFLNLRTRFFTLRTRVGTLTTRFLTLRIRFLALRTRFLTLKSGSSPRGQEDKVPHSEDKVLHTEEKGRHSDNKVPHSEDKIPHSEDKVPHSEENVPHTEDKAPHYEDKAPPCEDKVPRSEEKVLHSEDKAPDTEDKVPHSEDEVPHTEEKIPHTEDKVPQSEGKVPHTADKFPRSEDKDLHSEDKVPQTEDKVPRSEEKVPNSEDKVPHTKDKVPHSANKFPHSEDKVPHSEDKVHHSGTMFLTLKTIFLTLRTRVPQSDNEVPQTEDMVPHSENKVPHSEGKVPHTEDKFPHPEEKVPQCEDKDKVPHSEGKVPQTKDKVPHSENKVPHSGDKVPHLEDKYKVPHFEEKVSHTEDKAPHSEDKIPHSGDKVPHSEDKQVPHSEDKVHHPEDKVPHSEDKGLHTEDKVSHTENKVPDSEDKDPHSEDKVPHSEDNVLHSGDKVPHPEDKVPQSEGRNVPHTENKVPQSEYKSPQSEDKLPETEDKDTVLQTEDKGPHSDNKVPHSEDKVPHSEDKVPHSGENQVPHSEDKVHHWEDKVPHSEEKVLDTGDKVPHTENKVPHYEDKVPHSDAKVRHTEGNVSHSEDKVLHTEDKVPHSEDKVPQSECKVPHTGDKFPRPEDKDLRSEDKVLTLRTRSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E7Q2</accession>
    <name>A0A7D9E7Q2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004383">
        <property type="protein sequence ID" value="CAB4002547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E7Q2"/>
    <dbReference type="OrthoDB" id="7990652at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="17628" checksum="236F678C2ADED9CC" modified="2020-12-02" version="1">MLKIAEEKKKECPHAVTTLERDRYADDLIHSCPNTEEAPESMEEVDKVLATGSCVGKEWLCSSNVPSAAKTDTPKSPIVSENETNPNMLVVSLNGEEETKTLRVVLKPRKDVLSFASREIKIEKLKKRSVLSSISKLYDPLGLASAVTIKAKAPCKRFGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EHU7</accession>
    <name>A0A7D9EHU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006589">
        <property type="protein sequence ID" value="CAB4009841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EHU7"/>
    <dbReference type="OrthoDB" id="5951576at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16260" checksum="E01953808DA4F0A4" modified="2020-12-02" version="1" fragment="single">NSKTIMGSKCSILNDTEHDVWITHGINWPSFAAVVNFLLSLATVGTSAVNKNAGKAVVVFNGLIGNLLLFGMNESEKIKTDRTLAELIKPGKKYTWSGTLSLHMRVYVMNDKLQLDERVCFTGPTADSENVYPISTYFKKLDVTTNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIL3</accession>
    <name>A0A7D9EIL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048386</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006417">
        <property type="protein sequence ID" value="CAB4009326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EIL3"/>
    <dbReference type="OrthoDB" id="6782675at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301:SF11">
        <property type="entry name" value="GIY-YIG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="378" mass="43057" checksum="4177A517F6B96338" modified="2020-12-02" version="1" fragment="single">MVDQDSLSKLDQAISSRCGHLRSTIIERHEKKSRWRSTSDSEHSIMNKWVVNVSQRNLSNNEIDLLRKGLNFVGTPRRVPKKEILASVEQGIKDLTEEAKNDIRAGVFSILKHAKPLSTQNLTRGERKAVKDLKSEDTIIITKADKGNAVVIMDKAKYTEQVNEMLGDQTVYTRITDKRRNPTKRTETDLENILKELRRSKNITDREYWQLRAFDSSPATFYGLPKVHKVSLICNQDHYTLSESSVDVIPLRPINSNIGSPTYSLSKYLAKLLKTFCAKNEFSISNGKEFADFAKSQTLGTDETIVSFDVVSLFTSIPVPFALHIVQKKLKETDSWKSHTALKEEQVVKLLKFLLNNCYFKFNETHYHQKSGCAMGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EM48</accession>
    <name>A0A7D9EM48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A020793</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007064">
        <property type="protein sequence ID" value="CAB4011196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2196114at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00022">
        <property type="entry name" value="BIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1170.10">
        <property type="entry name" value="Inhibitor Of Apoptosis Protein (2mihbC-IAP-1), Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051190">
        <property type="entry name" value="Baculoviral_IAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001370">
        <property type="entry name" value="BIR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46771">
        <property type="entry name" value="DETERIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46771:SF5">
        <property type="entry name" value="DETERIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00653">
        <property type="entry name" value="BIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00238">
        <property type="entry name" value="BIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57924">
        <property type="entry name" value="Inhibitor of apoptosis (IAP) repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50143">
        <property type="entry name" value="BIR_REPEAT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="223"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="333"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="456"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="621"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="1389"/>
            <end position="1426"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="239"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="249"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="470"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="486"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="503"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="532"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="543"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="582"/>
            <end position="597"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="598"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="638"/>
            <end position="652"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4011196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1822" mass="199985" checksum="E73DD2CA77AD3DC0" modified="2020-12-02" version="1">MVSLLHNSTSKGPPLSSTSALLSQVTSLLPASSTDQNDAVSNKRKMWSEVNRRKTFNNWPHKDYKWAVPDTMAQAGFYHQSDRRTYPNSVDRAVCFTCNVGLVCWEPTDEPWSEHERHSPKCPFVRGECTENVPLSVTIATSPAQFHNEEKQKISCVSSPTSVPLMATSTAEGQIVVWDIRDELQVRTRLRLKLDDKILSNDIGELDDLLTADVMSDVIEESTKETLEVEPENGGLGSSGKASGASTSKPDKSTTTKDDMSEPQKSNCEESTGVPITLTSVGILRNNQERDNEAETPVFQTVLPEAMVITCVDTSLDISQPARPHLLVCEIPADKNRSGTPSKLPKSDGNKGKSKSVSYSTQLSFESEDEYYDPLFSVPSVFQSINSPLKDVGFSKSGAEKVDETKVVKDAKVVQCLGIDEIGSDNLKVSQVIPYEDGGHILFVLTRRKENCDQEACTDSHCPSKDNTSKTESISASLGNCDNSDDNASSSALPTSSGGSDSAPSTKEPTAGTTNGAPFDAEEDTDNKESYTDLNNSSSSVRPDSELSNEKTNGDKNTKNPVETEVEVATRNFAGNSECVTEELKSSDNTKYPKETSDPAGSGASVGAGAMSNVDLLKCTENNSSEDDRSDNIKYQGTSTESILSSESPSQSDTEPIKSQAIISSALHLLNSEHSIDENISSSVPKYSPTENTISPVFERNYSVCLLLYKTKKDKGRTLLEDKPCKTLFTTSTEDSLHDMFLLPDDAEDSFMPTSVEVNDVKKVYLAGISADGSLAVLDGLTLETVTRFSPDNSEPGQHIQRAIFCSGLGSFCMCTEGGRLHFLHLVKKSKLAEELASASASQASGVEKQASEPTSSIPLEDLSLKTLKSLVEMTTFENLVPRYTAIVPIFWSEIQQEQQQRRHPQHLLQNSQGDASCHTRTWRLQKKGLVGGDQLFKLMLPRPSYVGHVDITFTINKSAASKNNLQVILLKPRNSSLRPKPAQAFTLSGAQPTNDDVICGPIDLTRNLMPYGDKGHVVLTSASLLKTKVRSLHVVFKSEVKTSGKGEESSGGRNGFSDLEEISITVRSLNAHFNPDVFGVLLDTRSFCPRLMDIVCEEPNSEVSGQEREDLQWFALELLCWIAGISVHQPVSKESLASEVVERLPMFIESCLLSSSRSIAHKCSRLVVLCISQLSSSDQGSEAKSGVLKAFLELLPSTLSSESSGGIYWFFTLLTGMLTADDVDGAGRSCMELLMNIAQRLDSKLTYHDRVLRTSFSLYGTPLDPTIFDVSMETMGLFATSKLSDDLLNPKNIGKHSQEVDEIDLMDYIIAKNSSRTLGTSSKMEQLLSSMYGILEVEPLDFSCSSMSDGCKIDYCQGSGPQGGGSNGIGSLYYPSTSVDIPAPMSALQDHVQQLKEHEKLLSKLQKQKQQLEEQHQELEELGGMLFSPMNAAQKHSLYEEAWAKDMSSPHQYKFHAAFGGMKTVGLFGGKAPSQAASVKTNTSPVPQTRTSFQLPVPKLLTIEKLQTGARHFVVLDFGQSVRLTDIFIPTCLDLSSLVIDIWVDSEEKDLSRVAVSTDIGSKPLLLTDLLPPLTCRYLKISIFARHGTLRTKLILGEYFGYPVLSETGVTEAQPKENEDASREAYLNLMYDDVFCQYGIACSRLESVLNSTEPGALMSSANDKSRKDETTVKQAYEVCMSLQLRLNFLEQSIQRINRRQSGNQTFPRLSAGENVGTVIEHASYSKLKVISDWLVHVLVSLFGVEAPTDNSRMQWTQDITFETCQSLFTTFCVKGSSVSRARVGAVLLRTCGEQAWWGEFLAWVMERFFSLEQTLMFSQER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EW82</accession>
    <name>A0A7D9EW82_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tetrahydrofolate synthase</fullName>
            <ecNumber evidence="3">6.3.2.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Folylpoly-gamma-glutamate synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Tetrahydrofolylpolyglutamate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A049665</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>(6S)-5,6,7,8-tetrahydrofolyl-(gamma-L-Glu)(n) + L-glutamate + ATP = (6S)-5,6,7,8-tetrahydrofolyl-(gamma-L-Glu)(n+1) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10580"/>
            <dbReference type="Rhea" id="RHEA-COMP:14738"/>
            <dbReference type="Rhea" id="RHEA-COMP:14740"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:141005"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolylpolyglutamate biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the folylpolyglutamate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.17" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020010635">
        <property type="protein sequence ID" value="CAB4019810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EW82"/>
    <dbReference type="OrthoDB" id="5212574at2759"/>
    <dbReference type="UniPathway" id="UPA00850"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="entry name" value="Mur ligase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="entry name" value="Mur-like, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001645">
        <property type="entry name" value="Folylpolyglutamate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01499">
        <property type="entry name" value="folC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136:SF5">
        <property type="entry name" value="FOLYLPOLYGLUTAMATE SYNTHASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136">
        <property type="entry name" value="FOLYLPOLYGLUTAMATE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="MurD-like peptide ligases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="MurD-like peptide ligases, peptide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01011">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00030876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00047493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4019810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="414" mass="46647" checksum="EEB73568D9CE0EEF" modified="2020-12-02" version="1">MDHGTAEVSGTLVEKAVATLNTLQISKESRDQTKVKRPQHSPLTQAERFAEIRDLPVDQLDKLAAIHVAGTKGKGSVCAFCESILRNCGYKTGFYSSPHLSEVRERIRINGKPISKELFTHYFWDCWANFEITKKRYGTFLVFMAFHVFLKEKVDVAVIEVGCGGEYDATNVIRQPVVCGITLLDKDHLHILGGTVESIAWHKAGIFKAGVPAFTVPQEPASMKVLSERARERQACLKIVPDLFANTERNFPALGIEGKHQHQNASLAVHLCRTWIERRNDAHNVVLHEVNSSSDSQSPPYADAFSLPEGFKEGLAKAFWPGRTQCVEREDFTFYLDGAHTRKSIEACTEWFCEKSKQERQRKSHKTMARILLFNFKGDRNARSLLEPLVKCDFDYVAFCPNLLKDEPQSTTSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZM3</accession>
    <name>A0A7D9EZM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A076955</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The aspartyl protease (PR) mediates the proteolytic cleavages of the Gag and Gag-Pol polyproteins after assembly of the VLP.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010722">
        <property type="protein sequence ID" value="CAB4019984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZM3"/>
    <dbReference type="OrthoDB" id="1930928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="15" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-1188">Viral release from host cell</keyword>
    <keyword evidence="14" id="KW-0917">Virion maturation</keyword>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="777"/>
            <end position="801"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="16">
        <location>
            <begin position="779"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="1047"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4019984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1047" mass="119747" checksum="3D891D0E44CF5339" modified="2020-12-02" version="1" fragment="single">MDALRWLQENNQLYNDINVCEDWETYWEEDDADLWNAMTRASGIQVISGPDIRAALIQYFQTTDEKRHYMGFLEFDDTTFTNSLSTEEQQLQEFELYVNRLRNGEWADNLAVQGVVDMLNVNIREATNQIEDEEDIIAYDYEQTSKLRGIPYDTLLQDEQQLVNDDSTYSIAPGENQTPCAFLMDEKFEELANPSKYPYGRGGLSTKRQRKITARKYFNQRLLHKDGRFASDIDYLLAAQYTVEAKQVRDDMQITLRQTRGQSFQNRTVNAGLVKSSDNLQAMIRTDTAFKFLKNVRGSPAYWKTVLLDLLAMVRQLGMPTWFLTLSAADMQWPEVIQSIARQYGKVMTADDVKNMPWVEKCKWLRSNPVTASRQFKHRLDQFFKEFTGGKANPIGELQDYMIRIEFQARGSPHAHTIIWIKDAHKLDANTDEEVISFIDKYKTCVIPDENTDLRNLVLSLQKHTNQEVLRKVRELMEDKNIPEEITLQSLLQKANVEPHLYERALELMKSGIECVSLVIKNDNYIIMTTTTNSTGYGPRRGLLFDGNESKYELWEVKFLGYMRLQKLYKVFVRHTSEKDPPDASTQADAFAKLVQCLDDRSLSLVIRDARDDGRKALEVLRQHYQGKGKPRIISLYTELTSLKKEENEPIVDYVIRAESFATALRNAEEAISDALLIAMVLKGLPREYNTFATVVVQREKQMTFAEFKSALRSHEESAKTHGGKPASAGENIMLTKQKFDGNCFKCGRKGHKSVECWSKTSERWCSNCKNITHETKNAGRRKMRRRQQPRKQRQDTINISGINNKSNSSLLVDTGATSHIINDKSKFVDFDKEFNPSAHVIELADGSKANVVLGKGNAKVKLYDVNGNAREVMLNSALYVPSYDQNIFSVHAVIERGASISLDKQVKQLKCPDGTTFGMEQKGKMCQFRNRSPDERATAPLDFVHCDLAGPIDPVGRDGFKYALSFVDDYSGIIMVYFLKCKSDNPEALQQFLADAAPFGRVKRVRSDNGTEFTNHKFKSILRENGIRHETSAPYSPHQNGTVERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC66</accession>
    <name>A0A7D9HC66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">M24 family metallopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062088</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000100">
        <property type="protein sequence ID" value="CAB3978272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC66"/>
    <dbReference type="OrthoDB" id="4215474at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="entry name" value="Creatinase/methionine aminopeptidase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="entry name" value="Creatinase/prolidase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050659">
        <property type="entry name" value="Peptidase_M24B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46112">
        <property type="entry name" value="AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46112:SF2">
        <property type="entry name" value="XAA-PRO AMINOPEPTIDASE P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="Creatinase/aminopeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="Creatinase/prolidase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase N-terminal" evidence="2">
        <location>
            <begin position="17"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M24" evidence="1">
        <location>
            <begin position="154"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="393" mass="45029" checksum="FF0585891E2A13EF" modified="2020-12-02" version="1" fragment="single">KADEVQPTFSAQEMIRRQDTLRRHMETAGLDACVFTSHHNVFYFSDFLYCKFGRNYGYIVTKEKAISVSACIEYGQPWRRTFGDNIVYTDWHKDNFFHAVKQELGDVKNIGLEFDVVSLDEYRKFSDAFPNTNFQDVGESAMCMRLIKSDEELELIRQGARIADLGAEAAKKMIREGTREYEVALVGTEVMVKEIAKTYRHHELRDTWLMLQSGINSDGGHNSPTSRQLEKGDIMVMNSFPMPAGYHSAVERTLFLGHVPSDRHMELWEINCKVHRRGLELIKPGARCCDIANELNEIYLEHDLLKYRTFGYGHSFGVLAHYYGREAGLELREHVEAVLEPNMVLSMEPHITIPQGEPGAGGYREHDVLIVHDHGSENITKFPFGPEYNIVNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HEX4</accession>
    <name>A0A7D9HEX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Vacuolar sorting-associated 53 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A043585</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000398">
        <property type="protein sequence ID" value="CAB3981520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HEX4"/>
    <dbReference type="OrthoDB" id="10261632at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007234">
        <property type="entry name" value="Vps53_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04100">
        <property type="entry name" value="Vps53_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Vps53 N-terminal" evidence="2">
        <location>
            <begin position="42"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="26449" checksum="AEE579191F073EBE" modified="2020-12-02" version="1">MAEAEELGEQDSHFSKPIVYSPEVEQAISEVFHSDDPLDSKDFNAVDYINTIFPTEQSLTNLDEVANKMKYRIRTRVATHPIFGKVNNSDGKNTGNVSNHRQPSKVRNYAIEDCKEKHSTFLHPQRLSETPEPSKDLPKDSSNLSTESRNEEFNVEATSKESNNGYVRIKGENQSAVKVASTAGLAVVPVKVKAKGTGKMIETYAFLDSGSNTSFCTEKLLNQLDLDGECQHGSGVFIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HEZ2</accession>
    <name>A0A7D9HEZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein K02A2.6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054057</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000349">
        <property type="protein sequence ID" value="CAB3981066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HEZ2"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28606" checksum="D004632E52CBB4CA" modified="2020-12-02" version="1" fragment="single">MMVNGVIHVTSTPLWPQGNGDVERQNHTLLKSMRIAYAAGKDWRKELNKFLMAYRTTPHTTTGASPAKLLFGREFRTKGSIEQTRTGLFADDTKFELEKGKIYADRKRQAANRQIKTGDLVRVKNAKPKNKLSSMFEDALYKVKNKDGNEVTVESEDGVQYRKNSVHVKRYETEECDGEEIARYDITDCYKMDIYHHEYNTREPKTLQNKTQRKLSEDVCEPVSPRVSSIFLRSVAVSARELYGLCDVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HFS5</accession>
    <name>A0A7D9HFS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060879</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000642">
        <property type="protein sequence ID" value="CAB3983674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HFS5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24498" checksum="6CD3E7D950B2D64B" modified="2020-12-02" version="1">MKLEKCLKDYDANSNQSPIVIPQVPIVFPQPPIVPPQAPITPSLQVNKRNQDQTPELQISGHANQEFLNKLPLCDTQRFNCKQVNNLNETSLLPQHVMTPRQSLESNSPLLSNRSKKFLGKIPNGHRHGLNQSKTSNLETLLPQHVMSPNSHKHGIYQSKTSSLRDFTQPQRKIAPFRKSPANYRPPRIVLEKQSMEWAVYLQFVSQMTHKSTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMC2</accession>
    <name>A0A7D9HMC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075952</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000980">
        <property type="protein sequence ID" value="CAB3986221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HMC2"/>
    <dbReference type="OrthoDB" id="5969387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="18272" checksum="BECDF05A5701C12C" modified="2020-12-02" version="1">MAKTNKQSSKSQVMIKVMKWTDKHDLELIKEILTERPFDNPQGSRRIGLVWERIVDNLNSRADIVFNLKDIRAVRDRYNLLAKKYKKKEREEINAVALFESQEEEREKEKTAKDEDRSKQKMPDWSHLKLLEKQQKEKHQETIRSEPRKQLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMH4</accession>
    <name>A0A7D9HMH4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A036075</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020000710">
        <property type="protein sequence ID" value="CAB3984224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5982348at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 6" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="5">
        <location>
            <begin position="477"/>
            <end position="601"/>
        </location>
    </feature>
    <feature type="domain" description="Helitron helicase-like" evidence="4">
        <location>
            <begin position="742"/>
            <end position="916"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="3">
        <location>
            <begin position="1430"/>
            <end position="1624"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="251"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="254"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="309"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="338"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3984224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1876" mass="214052" checksum="3B97D6283273663C" modified="2020-12-02" version="1">MSGYIVYVALLLRMANDVEENPGPTIYDVVDPTKTICADFSQGNTKKFRQNAGKQCLAMSLTAIIYNHITNANQWDSTILNSIMCAGNILYSFISNSVKKSYLLLTDVPEMVSVFDCIYCMEYGDPFAGDLFMANMTLPYYSIDKALNNIFAETHLNYQHCMLTIGSNTVASLKTSEGTFKVFDSHSRDLYGMPHPFGKCILTSVDSIENLVIYFQSTVPPGNETPFELKGVTVQLNSDITQINGLASSQSAKECVKQKRSEETKSKKQSRLENARKYKKAKQAAETDKQTRLQNVSDYKKAKQVVETQSEKQTRLKKATEYRKATEYRKAKRAAQTENEKQSRLENAREYRKAKRAAETEDEKETRLGKVRNYEKRKRAQETEIEKQARLANQNKRKRLHGSTQITSQQDYLSKFDIEKDGSIHEQSWAKFNINKFSKSTEFFISQCTICKEAWPLNSKPRSPDCYICSRCARDTKSPRKFSLENSMIPSPVPTELQNLTQIEEMLIARALPIMRVYIKPGGQRGYSGHCVNLPQNVKELATSLPRYPKDLSVIIVKVTGKDNSFRDVAVRREKVHNALLWLLQNNPHYAELQINEDALNSLPENGIPADLMTVETEKEIISNDDVMSDLGPPTENPSEDIVYNNSTDMNTFLPVGEQHEQEIEAVRNQLSPNEPMPWPAIESEPLNEYQISHLATMAFPTLFPDGKGDPTNQSILRNVPLQERIKHLLKFAEFIDSNWVYRFANHPRFSYWAFNMIHRKRILQQSGIFIKQNPGEAHLTIDELREMAASDNSALLMSKVSRYIGNIAGTNAYWNKVREELKAIITNVGAPTVFFTFSSADMHWPELHALFGANTGNATTEARRQNVINNPHIVDWFFTQRLEKFVQHWLYDTLGAKWHWFRYEYQGRGSIHCHGTAKLNNDPGLCQLTQTALKGFLAQKFKNENDCSETTELDQDIEAGQKAADTVCQYVDWLLSTVNPNPPDEDMWIRPEVHPCQRSHHDIPEHEKQSDYVDLLNMVQRHTRCSTSYCLRKKSSETELKCRFHFPFDNCPKTKLEFEKVHTSGDNEHYRAKIVTKRNDSRLNNHQQLQLQGWRANCDIQVVIDHYACVEYLTKYAAKGEPRSPILKQAFNSIVQNVDSNTDPRRVIKKVVMKSLGERDYAAQETMHHLLSLKLHSSSFKVMPVSLNGSRRVRDTASIDEGESCTDYSLLDVYANREQYDSSQNIINMNFVQFATTYKVVNNELTKLPENVIPRIFPTYSPNPKGPNFALYCKYQLLRYKPWRTTQNNAWGDQEPTDEVLINCWHEFLQTPYGQSNVPDWFDKLQAVIQTQESEEPSEEQEPTREEWMILSDLNTPFDNSEQTPESTYDWHLDRANYSQQQIQEMPTWIKTNKEEYTIDEQYDVVDINSFSEMQKLAYDIVKSHFDDISSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRGVTVHSLLKLPIGSRGKKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGYNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQVQFRDLLLRLRKGNSTVDDWKLLLTRQPSNVTNLCDFEDSTRLFYSNEQVANYNHEQLTKLEHPVAHINARHSSAFAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPLCIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSLKSSANLQYRLEEENRLDQLAQATSSAFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZL8</accession>
    <name>A0A7D9HZL8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034706</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003070">
        <property type="protein sequence ID" value="CAB3997306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZL8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="62" mass="6485" checksum="59B01BC3F5DB47EF" modified="2020-12-02" version="1" fragment="single">MDNLAVDDDLAGDNQAVDDLAVHDLAENNDLADDNLAVDNLAANDDLAINYNLAGDDDLAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I034</accession>
    <name>A0A7D9I034_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="28">ATP-binding cassette sub-family C member 5</fullName>
            <ecNumber evidence="6">7.6.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="29">Multidrug resistance-associated protein 5</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="33" type="ORF">PACLA_8A065944</name>
    </gene>
    <organism evidence="33 34">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="33" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="33">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="22">
            <text>(2S)-2-[5-amino-1-(beta-D-ribosyl)imidazole-4-carboxamido]succinate(in) + ATP + H2O = (2S)-2-[5-amino-1-(beta-D-ribosyl)imidazole-4-carboxamido]succinate(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66752"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:167466"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="22">
            <dbReference type="Rhea" id="RHEA:66753"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="24">
            <text>3',5'-cyclic AMP(in) + ATP + H2O = 3',5'-cyclic AMP(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66184"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58165"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="24">
            <dbReference type="Rhea" id="RHEA:66185"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="27">
            <text>3',5'-cyclic GMP(in) + ATP + H2O = 3',5'-cyclic GMP(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66188"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57746"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="27">
            <dbReference type="Rhea" id="RHEA:66189"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="21">
            <text>ATP + H2O + xenobioticSide 1 = ADP + phosphate + xenobioticSide 2.</text>
            <dbReference type="EC" id="7.6.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="26">
            <text>N-acetyl-L-aspartate(in) + ATP + H2O = N-acetyl-L-aspartate(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66744"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16953"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="26">
            <dbReference type="Rhea" id="RHEA:66745"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="23">
            <text>N-acetyl-L-aspartyl-L-glutamate(in) + ATP + H2O = N-acetyl-L-aspartyl-L-glutamate(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66728"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:76931"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="23">
            <dbReference type="Rhea" id="RHEA:66729"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="25">
            <text>N-acetyl-L-aspartyl-L-glutamyl-L-glutamate(in) + ATP + H2O = N-acetyl-L-aspartyl-L-glutamyl-L-glutamate(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66732"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:76935"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="25">
            <dbReference type="Rhea" id="RHEA:66733"/>
        </physiologicalReaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Apical cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Basolateral cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasmic granule</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Endosome membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="20">Golgi apparatus lumen</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="33">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.6.2.2" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020002482">
        <property type="protein sequence ID" value="CAB3994524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6500128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016324">
        <property type="term" value="C:apical plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016323">
        <property type="term" value="C:basolateral plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005796">
        <property type="term" value="C:Golgi lumen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008559">
        <property type="term" value="F:ABC-type xenobiotic transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18592">
        <property type="entry name" value="ABC_6TM_MRP5_8_9_D1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18599">
        <property type="entry name" value="ABC_6TM_MRP5_8_9_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03250">
        <property type="entry name" value="ABCC_MRP_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03244">
        <property type="entry name" value="ABCC_MRP_domain2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1560.10:FF:000012">
        <property type="entry name" value="ATP binding cassette subfamily C member 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000074">
        <property type="entry name" value="Multidrug resistance-associated protein 5 isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1560.10:FF:000015">
        <property type="entry name" value="multidrug resistance-associated protein 5 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000605">
        <property type="entry name" value="multidrug resistance-associated protein 5 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF447">
        <property type="entry name" value="MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="30" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="13" id="KW-0967">Endosome</keyword>
    <keyword evidence="19" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="17" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="18 32" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="34" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0677">Repeat</keyword>
    <keyword evidence="15" id="KW-1278">Translocase</keyword>
    <keyword evidence="10 32" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="16 32" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="209"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="293"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="326"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="750"/>
            <end position="773"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="807"/>
            <end position="831"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="880"/>
            <end position="901"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="907"/>
            <end position="926"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="32">
        <location>
            <begin position="992"/>
            <end position="1014"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="31">
        <location>
            <begin position="398"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="31">
        <location>
            <begin position="695"/>
            <end position="721"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="30">
        <location>
            <begin position="659"/>
            <end position="686"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="31">
        <location>
            <begin position="398"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="31">
        <location>
            <begin position="429"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="31">
        <location>
            <begin position="695"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="31">
        <location>
            <begin position="706"/>
            <end position="721"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004463"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00004554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004608"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00009726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00023769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00034018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="ARBA" id="ARBA00050661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="ARBA" id="ARBA00050745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="ARBA" id="ARBA00051604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="25">
        <source>
            <dbReference type="ARBA" id="ARBA00052576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="26">
        <source>
            <dbReference type="ARBA" id="ARBA00052708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="27">
        <source>
            <dbReference type="ARBA" id="ARBA00052963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="28">
        <source>
            <dbReference type="ARBA" id="ARBA00069159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="29">
        <source>
            <dbReference type="ARBA" id="ARBA00082793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="30">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="31">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="32">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="33">
        <source>
            <dbReference type="EMBL" id="CAB3994524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="34">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1332" mass="147755" checksum="2A07B0813A0EF83C" modified="2020-12-02" version="1">MLLSWITPIMKKGFKKPLELDDLGKLPRNDSASFNYRRLQKLWTEEVNKKGLENASIGKTLFRTAKTRSIAGAMLFLLALITSFVGPAFLINRILKFVEAKTDPVEKGIILVVGLMISEIARSWIQSLSFLVNIRTGTRARSMVWTMVYNKMSRLKNAGDKSIGELVNICASDAQRVFEAFSFGPFVLGGPIALIIVIAYTTYIIGPSALLGCFIFLIMFPIQGVVGRISGKFRAKAVRVTDQRVKLMNEVLSCIKLIKMYAWEKSFAKVIGEIREKEKTVLAHSAVLQSLNISMTSVVSTFATVITFIVHIYTDNNLLASQAFTVISVFNTMIFAFAILPFAIKAIAEARVSMKRLKSLLIMEEHEPWATKPEDENVVVEIKSATFGWNEVKLKEQKKITPGEEKNGKQTKDSVSKGKDRSSATNGSRSGGGRGGPPGRGGPAPEEFKTQLVKTLFDVNVTFNKGKLIGICGGVGSGKSSLINAILAQMNLVEGSVSVNGSMAYVAQQAWLMNASVKENIVFGQVFKPVRYEKVISACSLKQDLDIFPHGDQTEVGERGINLSGGQKQRISLARAVYADKDIYLLDDPLSAVDSHVGQHIFDNCIKGTLADKTIIFVTHQLQYLSHCDTVILLKAGRVAEMGKYETLMQDEKDFSVLINNYHQRLEAEENEDEDEEENTSKLLEEIVRKRTLSTQSIGDNQPNATEEKKEMNDESKMNGVEKGKDNLMKAEDRKKGGVSFSTYIRYCKAAGGFCVAASVVLILLTITLLRIFTDFWLGRWINDGNGNSTESDLSPGELNDNPDLDFYAAIFGSSLALLMFLLVVKCFIYVNTVLRASSNLHNQVFRAVTKSPMEFFDTTPIGQILNRFSKDIDEMDTRLPFLVEALVLNLSLLLVTIILIAVLFYWFIIALVFFIALFIFLNIVFRRSVRELKRLDNISRSPIFSHISASVQGLSTLHAYGKTEEFVEKFEKLLDGNTLPFFMFACSHRWLAVRLDIITIGITTVTALLVVLLRDNVPAAMGGLAITYAIRMSGTLQFTVRLTAETEAIFTSVERLLHYIDNLKQEAPSSIPDKKPADVWPAKGSLSMVGLKMRYREGLPLVLKGITCNIKAEEKIGIVGRTGSGKSSIGVSLFRLVEPADGTICIDGVNILDIGLDDLRSKLSIIPQDPILFIGTVRYNLDPFHAHADEDVWIALERAHIKDTISNLPLKLQAPVVENGENFSVGERQLMCMARALLRNCKILMLDEATAAIDSETDAKIQDTIREAFKDCTMLTIAHRLNTVMDSDRIMVMEQGQIVEFDKPSALLANKDSLFGSLVAATEKSHQNKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2W1</accession>
    <name>A0A7D9I2W1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030476</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002738">
        <property type="protein sequence ID" value="CAB3995823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2W1"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="59" mass="6481" checksum="CCADB690B71FB9BC" modified="2020-12-02" version="1" fragment="single">GSILGPLLFLTYINDLPQCLKHSTARMYADDTNIDSTVETTTGTSIREIVTHANDDLNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6C5</accession>
    <name>A0A7D9I6C5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003795">
        <property type="protein sequence ID" value="CAB4000275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6C5"/>
    <dbReference type="OrthoDB" id="6781885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="819" mass="92921" checksum="43A100E90AF0C131" modified="2020-12-02" version="1">MGKLIILLGDLNCDMLKPTPGSASLIKMTKELNLNQLIKSPTRITESSQTLVDVIFVSSPRLVVNSGVIETCISDHFPVYVSLKLKTDKSPPNHITTRSYNKYDPDLFAIDLASNRDRLVSIFRMDNVDEKLTIFNEIFLNTLDKHAPVKTIKVRGKSCPFITPEIKTSMIKRDQLHSLFRKTRDHYDWLNFREARNFTKTALVNAQKEYVLKEVQQHRNNTGSLWKVIKENIAYRKRESVVYSKEPKLVAEEFNHFFSTIGVNAAKKASTLIQDPSVYPARNLSDVNRTDNSYPEENDRFSFTPVPCSEIRNIILAMPSNKSPGKDKVSMRVIKHSLPVIFGPLTDIINCSLSSSSFPIAWKEAEVIPLLKDGNHEEASNNRPLSLLTFLSKICEKVTLNQFGSYLMKNKKLSTHQSGNKKHHSCETLNLLTGDTILKAKDGKLVTALTLIDLSKAFDSVNHTFLLTKLSNVGASPSVVKWFESYLTGRTQSVRIGSTVSTPLPVSYDVPQGAILSPLLFSIYTNDLPSSAHHSKLESYVDDSKILLSFTVANVDCLKQQLEEDLYLIANSCSKNELLINPGKTKYMLIGTRQNLQQLPVDMTINFLNETITPVSFAKDLGMTIDSYLTYDQHITNLVSSCMNSLCQINRVKKCFDKEALTLIVSALVMNKMFYCSTVWSNTSSTNIKKLQLVQNLACRIITNIGKFDHISPGLRELNWLPVKEQLLREAIMMYKCVNELAPHYLSDLFTKRSDIHQRDTRSHDSLQIPLYKTSAGQRSFHYRGVTLWNDLDIKFKKLDSLKTFKNELKRSMLEQIYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9L0</accession>
    <name>A0A7D9I9L0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031342</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003961">
        <property type="protein sequence ID" value="CAB4000921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9L0"/>
    <dbReference type="OrthoDB" id="10343073at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13634" checksum="9B6DEAD64A50003D" modified="2020-12-02" version="1">MKSLSVLVVLCFAINLSFSQVFRRCELQVYSEGLQCKCCNINSYLCSHHCCPLTHKCRHGRRPWCEGPGYSDENPGDRTQAIDKERADYDECDNDQAKSYQYLHSRRLTAFHVSHSGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJR1</accession>
    <name>A0A7D9IJR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023298</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005749">
        <property type="protein sequence ID" value="CAB4007281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJR1"/>
    <dbReference type="OrthoDB" id="5954791at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="260" mass="29490" checksum="A5B0807C704A7DF9" modified="2020-12-02" version="1">MSCSMNYNCCQESGLCPKNATCKPINSLQQPWKRFTCECPDGYHGYFDSDGAWTLVHSCSFANGLYNQLKKSLSQNLHVGGNALVWRGYRLRKTRMESIKKSSNFLQFTCDYEKHRDGEKLDYVQIRLGNISGDVLELNNDHTSYVTVGEGYGKIERYDLNGCQVKLHQRPNRPLHVHVRHAIADSKCKVSANDSSCTDKDKYFDCYTSPSECVKKVHRCVQNANSTTQLWFGMRKDNAAQLPPLDGKTSGRSVESYTVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IK98</accession>
    <name>A0A7D9IK98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041926</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006553">
        <property type="protein sequence ID" value="CAB4009726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IK98"/>
    <dbReference type="OrthoDB" id="5977502at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="28699" checksum="3189379154714CFE" modified="2020-12-02" version="1">MSGTHFYLTLPSNASLDVFPDNKTTEYRVKLPQPIDLDGNWEVGLYSISYPYTWYTLRDISADTNFLYLSSTDRWISSAAIKYGHYETMEEFTKGMNDALKQEIGNNTDIYLTYSALTGKVTVHLKPKCKLFLLDKLSLILGFGGKEVKIDKTGESPHVVDLNIFSTIYTYCNIVQPQIVGDTSAQLLRSIPVEGKYGDIVTKTFTNIQYVPVQTKSFGDVKILLRNDTGDPVPFERGKVLTTLHFRQHTYFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9INF3</accession>
    <name>A0A7D9INF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001104</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007916">
        <property type="protein sequence ID" value="CAB4013528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9INF3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="516" mass="60131" checksum="4B5A65B14EFFEC14" modified="2020-12-02" version="1">MASKGNKRQAGDEGKVVDKRQKGNDGGVVDRKTVELVRKLFNEFDREKREKNIEEIAKMVVDRNNKQNLSKLADMVKNTKSLYREKRNYNIEDRDIVELAALVRSHRNISLPRTSFSVRQIRTHERFGYTEYIFDVNVGSEHMRSLPDFLVNLRSVFDYLINTMMYYAGSNTDKARFFISNAPRTPFSTAVLNVTDFTTDMFFNIFEKHMQSNAQEIINNGWNTTVSLYIFPNTRTSRQQHVKKRKKQSRMYKYLGKNDTESGSGKKNDVALKHGREVRHGVFQIGKANVKNSCLALALLVGKSYLRNDTNAQKLKRNSNLTLSDLYTDEDITNVYTTSCLPVGPVRIKQLQYVYEKYLKPDGLDLVVFSKNQADSIVYDSRLHDNQRLHRITNDVIFLWLNEKHYDLVTSPYTFSRLNLGKFCFSCMRYFRRFEIKDTHVCIASLTCHRCYANTTKCIETPGFVQQCTMCDIIFYNPDCFRNHLVQRVFKTFVNGKLTMETPCQRVFFVLFVTNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQW9</accession>
    <name>A0A7D9IQW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019682</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009208">
        <property type="protein sequence ID" value="CAB4016655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQW9"/>
    <dbReference type="OrthoDB" id="6140287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="309"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="352"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="309"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="357"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="374" mass="42372" checksum="1A3360F229B35163" modified="2020-12-02" version="1">MAEDTSDMEKELLIEEEQHQSDEDLSTNERFMELLSKMNDNICALGVSLNKRKHESFVSDQPSTNTAVSAKKAKIRSLSESVSDNESDSEALLGDAEQGRHHNANGNDENNSNEDEQQTANMADVDDPLLDEIAQSLDETERTGDPVSDKLALIANKRWNHKLSDDQLKEKAEKYPRPANCDKVVSPRVNPEIWAKLTRAVRGEDHKLFRVQTQLSTVTNLVVQATDMLLKAKSDPKSLKIDDLVRMNTDAVALVSHASHELAQRRREIIRPHLHRDYIELCSQEVPVTSLLFGDDLQTELTRIRATNKIGNTTNPSSHAPSQRRIYKPSTSNYGNKQPPFLWRGAQSYRRLENNNRRGQNRGQNRARFGPMKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IX03</accession>
    <name>A0A7D9IX03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023342</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010240">
        <property type="protein sequence ID" value="CAB4018969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IX03"/>
    <dbReference type="OrthoDB" id="10000497at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="8235" checksum="535466EC3EFFB96A" modified="2020-12-02" version="1" fragment="single">MKKLSNSDVLKNLDEKLKHLEPSEREDLKKIIGDYNHLFPVVPSRTEMIYHDVKIEDTARQSDCGLLVKIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IYE1</accession>
    <name>A0A7D9IYE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004031</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008991">
        <property type="protein sequence ID" value="CAB4016146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IYE1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="124"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="350"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="150"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="358"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="45347" checksum="7619FB2FB5355321" modified="2020-12-02" version="1">MSSHHKRKRSHSRDSTHRSSKSKKSSSSTEQSDHAKIDEEMLLQLRAISSTVSDLKSNMEVCNRRISQLEDVFTSENMTHSHSEKQPEPCRDGDTLSILAGNDNPENFEDLAIEPPEQAIEPSEQAIKPPNSAVQLNTSDDICGDRIDPSKQQSVELSNASEGQPGLYDPEAVTTSWSPSQEFKDFLEKNFRRKLSFDHICDILEEQAIPQVDSLVAPTLDPPMLSHVSYQNKKFVQERDKELAVVQRAMLNITGPLCTLHDRLENNLPVSPTELKLLVEQSLCLVGSANSQLSVLRRKKVLASINKSKIDLANQPLPNAQRWLFGDDFPSIASKEAELSRGLAKNLAPTAPKIYNQDPKQPSRSFSQSTKYNTQNNRGQFSRTPQSRFQRPPNYHTTSNSGRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IYE2</accession>
    <name>A0A7D9IYE2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022533</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009065">
        <property type="protein sequence ID" value="CAB4016300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IYE2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="103"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="18383" checksum="49E9E9D7D726CFD3" modified="2020-12-02" version="1">MEDKSEQIQAQVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAEPKEPSSNDSMITYVGVAIALVSLVLAYKSHQRETKELEPKYIPETVEMSKESKMTKEVYNAVLLTAGAVGISMASKKLLKEPLGTPENVKGMAKLAVSVSLSSLLVSYLKDKKYLPDDPFKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J049</accession>
    <name>A0A7D9J049_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067185</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010249">
        <property type="protein sequence ID" value="CAB4018985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J049"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="13819" checksum="6706C42FDD5E9767" modified="2020-12-02" version="1">MVDGMVTEYLYINRGVPQGTVLGPVLFSIMVDDIKTADPSNALVKFADDLTLGVPGNESGDTSRSEAACLQDWAEENRMPLNLEKAYDMVVRRHTSVVLPELIPSIKRKTWLKLLGVTLQDNPCN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J540</accession>
    <name>A0A7D9J540_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Angiopoietin-1 receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A083761</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10596"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:20101"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:61978"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.10.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endomembrane system</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011791">
        <property type="protein sequence ID" value="CAB4022081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J540"/>
    <dbReference type="OrthoDB" id="5961875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048468">
        <property type="term" value="P:cell development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007169">
        <property type="term" value="P:cell surface receptor protein tyrosine kinase signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050793">
        <property type="term" value="P:regulation of developmental process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00192">
        <property type="entry name" value="PTKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001512">
        <property type="entry name" value="Receptor tyrosine-protein kinase erbB-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050122">
        <property type="entry name" value="RTK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416:SF622">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00109">
        <property type="entry name" value="TYRKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0829">Tyrosine-protein kinase</keyword>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="317"/>
            <end position="559"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00051243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4022081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="559" mass="64160" checksum="0E83B8BCAA9AA6F3" modified="2020-12-02" version="1" fragment="single">MQEVLDAMNDWELRNKMKLNAEKTKDMWICFKAAIPEPPSLKIGNDTIERVNSFKLLGFGLIIPLNGTRTLKKLLRKQKNADFTYGNVVEKICQPNPNMGATDEHNKLAIIDNIFITTPKIFICKNSEEFEYNAENYCFVTYLARLPSENIVMFRTRVHCRMCTKNFKIDHFIPPSIYPKIKCSNKSKYRRDANVLTCLNNDPSYEFIGEDKSLSDFQTLIKHSFLLNFLHELLSFLNQVKSLVLTLSNNYNTVMKTFENNDDEFQSYHEKHANSKESPKTRCHELQQLNTDIESNTEDVSYVVLLEDWDILPNKLNVLDRTLGAGKFGIVKHGLYTPSENDYPMDVAVKMLKENATEQERLDLVEEIKILKKVNEEPHPNIIRFIGACSIEGKLLVVTEFCPGGNLRKFLIKNRANYVNIISRLTNRQLLTMALDVANGMVHLSAQKVVHRDLAARNILIGQENIAKICDFGLTRDIRSAEEYVRHNQNLLPVKWMAVESLVRGRFTTASDVWSFGVLLYEITTLGEEPYKNISPYDIINHVGCGCRMSKPSHCSDEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8H9</accession>
    <name>A0A7D9J8H9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC763146</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012875">
        <property type="protein sequence ID" value="CAB4024168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8H9"/>
    <dbReference type="OrthoDB" id="6021232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="190"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="714" mass="80996" checksum="612211538B964606" modified="2020-12-02" version="1">MAAAKIDYNSNMPIFRPLTFLKRSTTYVLRKAELSYSRCREIFKQALESLGYDAKNYGLHSLRAGGITAVVQNSNNTVPERLLKLHGRWKTDAAKDMYIQETVSKRLQGKEGQIKYLTQETLDKIVERREQWLCLSSEYKDFTKVAKKSFEFIPESLNVNDIGKNYLYHYACYHNFTDISKFERAKKTWSNAGRKHQGDSPSEKEEEVKPTPEKVPQTTRQSFATAHATSASGSSSVLPKSCLICKQLRPIFFTDKVNGCSLQDFFPVAMEIKKLLQESKGIYADWPPDSHDLTLQSARKSIPVKLCNFLAWAMGFSDQPLREERVQISGNEQTKLVSIAQDLIYAESKGRKFTHKSLALGMTVRQITGSVRLLRILHGLGHTASVATVYKRDTALAIASSRGQDIIIPRNITPGIFATVVWITTTSTKKLSLKRELPMWRMELCCKTGTQPWEIMSLQSSDISIDDKSYQDEQQFARNADFVYTLSRKYASESGLLFPGWTGLNTQVHKEIPTVTNIGYLPVIDAPVTDLATVNALLKHSVSICQRLQLPEIVLVFDEALYAKAQMRRWKNEEYKNRLVIRLGDFHTIMSFCSAIAKIFKDTGLEDIMIESEIVAPGSVKGVLSGKHYNRSVRVHKLIYEAMQRMRFEAFEKSIASSASNQFDSVGISVLEDSERESFTEICTSKQVNDAKRAYDTFVEKRSESYVCPLVQIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBW4</accession>
    <name>A0A7D9JBW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014077</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014136">
        <property type="protein sequence ID" value="CAB4026320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBW4"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="617"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="617" mass="71375" checksum="3FA17D9E0752E60B" modified="2020-12-02" version="1" fragment="single">MIELYPANCSKFLLSLFYRPPNSEEDILIELRDSLDRLDESCQLVLVGDFNLPNIDWSLDFPSPTSKGSFKEELFCEIITDQFLYQKAVGPTHLHGNKLDCVFSNSPKLITNVNCTNPTDLFPTDHYLIEFDIKVCFQKAKSIRRTVYDFNNANFDGAREHLMNVPLDSAISNNSDIDECWKAWKDLFITAIDKFVPIKTVVDTNTPPWIDRDVKHMIRKKYTALRHYRQKRTEGRKRKLRQLTQETKDLIKQKRHQYIEKVQDSLAKSPKLFWSYHKHILRNRNSPPANTYNNSTATTPHKKAELFNAFFASVFLPKSSSQDENLNMTQKTYEIISDIQISQNEVEQYLNHLDTTKAYGPDGIPPRLLKELSREISTSLCSLFNMSLTTGRLPMEWKHANVIPIHKKDCVEPVTNYRPISLLPIISKVLERCVFNNIYPFVRVLINNVQHGFLRNRSCITQLLGILHDIGKNLDRNKQIDVLYLDFSKAFDSVDHDILLHKLQMHGINGTLLRWFENYLNDRWQRVVIDGAASAWSPVTSGVPQGSILGPLLFLIFINDLPDNVSPSTNSALYADDSKLYREIKSVEDCQFLQDDLAKLEKWSTDSKMRFNTEKCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JK58</accession>
    <name>A0A7D9JK58_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A047378</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017571">
        <property type="protein sequence ID" value="CAB4031368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JK58"/>
    <dbReference type="OrthoDB" id="5982216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4031368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25640" checksum="11C89571B6AE95B2" modified="2020-12-02" version="1" fragment="single">MEDDEQGYDVNRFVGEVREDLLCSVCQDVPKDPRLCQNKDHIFCLAHISRHLHENSHTCPVCRDPLTPETLRRPTGFLKNYLEDLKIKCDHHDRGCPDVVRLEDLQRHVDQCGFEPVMCGNEGCGTEVNKSDKENHENFFCQFRIVKCRDCKNSKARENGIKASQDEIKASQAGMKASQDELKACQDEIKASQDEIKASQDEIKASQDELKASQDEIKASQDESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JL29</accession>
    <name>A0A7D9JL29_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014924</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017287">
        <property type="protein sequence ID" value="CAB4031003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JL29"/>
    <dbReference type="OrthoDB" id="5986507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="721" mass="82492" checksum="BDA327D55A449240" modified="2020-12-02" version="1" fragment="single">TGIIPAPTIGDHDAVFACVNVRVRRFQPRYKWIRLERKFVTEEFLQDSANLPFSVIYGLESPDDMVNALNTLFSESIERHAPLKRIKLTRPPAPWMNANEIRKLQADRDRLRFEAHKANSDDSWKAFREVRNKIKSVINKTKRNFIKTALSSNRPKEVWRMIHRILHPNKKPLHADPDKLNDYFINTNERTLGTKPAALSDLLEFIDSLSDSTTPQQSFSLRPVSHREVLCEIDKLRSDTSTGIDNIPVKFVKLAREHLAGPLQYIINNCIARSAFPEAWKIARISPIPKIDQPLCEADYRPVSILPALSKMIAYIEERVLLGATISGFRKGHSTTTVLLGIRDALIRASKKGEVTLMVYADYSKAFDTVQFRCVLTKMHGLGFSKSFLHWMINYLTNRQQLVQINDSKSSLLTVQFGVPQGSVLGPAIFNLYVADLQEKLQLPCYQYADDTSFYTHSKVCDLDSAVKDVNDAIVRLVDYSQCSNLALNSSKTDWMLVSTPQMARAHDLGDRTFSIKCGDKFLERIKCKNLLGIYLNEHLSWSSHIDYLLTSCYGILAVLKKLKNLTPFHVRKTLVESLVLSKIDYASPVFHPLPIYQQKRLQRLQNSCAGFVLRRFARQEDLATLNWLNISKRMDFNILKLAYKALHDDSFPEYLRLSLHCVNAYSLRSSSAPVLDIPKESGTFQDSAASIFNKLPEEIRNINNYRTFCRCIKKHFKNSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JQX6</accession>
    <name>A0A7D9JQX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019665</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019987">
        <property type="protein sequence ID" value="CAB4034286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JQX6"/>
    <dbReference type="OrthoDB" id="5985347at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="16168" checksum="41F3545429A1DD26" modified="2020-12-02" version="1" fragment="single">QGKEVRVVYLDISKAFDCVWHRGLLKKLESLGICGSLLHWFESYLQDRMQRVVLEGQSSEWKKLYWGVPQGSVLGPLLFLIYVNDITDDLESKPFVYADDTTLFEVIDDPVESAENLNNDLAKISEWSDKWLVTMKPLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JWI2</accession>
    <name>A0A7D9JWI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028761</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022327">
        <property type="protein sequence ID" value="CAB4036715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JWI2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17993" checksum="566AA7177C186256" modified="2020-12-02" version="1" fragment="single">MSKIVDKKLLELTGKIKALNFAIKKSDEVIDSTKTEVLTRQISSITNRIQAIYALKEEIEEIKFTDNDSEENIRDWAEEVESRISEADNKVSEIRERLNEIKETERAAAEETERVAIDIKRQKQLEFEKQKFELEQAAKDEERKRELKHKTEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JX42</accession>
    <name>A0A7D9JX42_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001167</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022620">
        <property type="protein sequence ID" value="CAB4036993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JX42"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20115" checksum="AD1C2913C0BD7DD2" modified="2020-12-02" version="1" fragment="single">FGFRTSRSCELAVTHLTDKILTNIDNKKLNGLLLVDFKKAFDLVDREILILKLRMFGCSSLVLKWFTSYLSDRYQRTYFKNTLSDMRPVKIGVPQGSILGPLLFILFINDLPSQLSHSESTMFADDTTVLTEGSSIHDLNVKLNLVAQDLSTWTQQNRMVTNTLKTKTMLIHSPPTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JYJ0</accession>
    <name>A0A7D9JYJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A027485</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023399">
        <property type="protein sequence ID" value="CAB4037721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JYJ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043658187" evidence="2">
        <location>
            <begin position="29"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="98"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="119"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4037721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18223" checksum="ECA888503A31700E" modified="2020-12-02" version="1" fragment="single">MTATQCSCTSVSILFLMLVCFISKLLEAKRKLPHEENCRARKIPRLAKDVAVTNEQSDSLSFFQKVTKFVGSFWPSSFKENNPLDNNTTTGERKNGPNSHSSINKSRISSAVRSATRSSPRRRRQRHRTTNNDSRMLQQLHVTSPLRRSPRVVTLHSPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K4F5</accession>
    <name>A0A7D9K4F5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087114</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028018">
        <property type="protein sequence ID" value="CAB4041246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K4F5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="19434" checksum="AD7C1B7B98201479" modified="2020-12-02" version="1">MPLNNYTPCMNVDQRRDETELITSYFQQGFTNVEKLEFLKLHGIEFSSSTLKRRLQSLGLRRRIPADEQVSQEDIERMVEHELSGSKCNVGYRKMWKHVMTKYGIAVQRDVIRKCLGWAQVVGKFLQRLRDFDLYNNSDPVQVDLIRFCFMDILRDELHKIAEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXK1</accession>
    <name>A0A7D9KXK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011223">
        <property type="protein sequence ID" value="CAB4021012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXK1"/>
    <dbReference type="OrthoDB" id="10037790at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032981">
        <property type="term" value="P:mitochondrial respiratory chain complex I assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033617">
        <property type="term" value="P:mitochondrial respiratory chain complex IV assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014807">
        <property type="entry name" value="Coa1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47148">
        <property type="entry name" value="CYTOCHROME C OXIDASE ASSEMBLY FACTOR 1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47148:SF1">
        <property type="entry name" value="CYTOCHROME C OXIDASE ASSEMBLY FACTOR 1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08695">
        <property type="entry name" value="Coa1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15095" checksum="8C8642F9CB4A6F4D" modified="2020-12-02" version="1">MSYEKLRKIAIYGAVASISAAFILHHKTQANLAAGGYYQLTTEAVKQHQQTNDILGSPLRFAYMNLSRRDIRITKDQAQIVVPIRGSKRSGNVYSKSSKRNDRWYLDNVEVEVNQSEGKRIKVVSEDSFTDNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L142</accession>
    <name>A0A7D9L142_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine- kinase endoribonuclease IRE1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001011</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012630">
        <property type="protein sequence ID" value="CAB4023694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L142"/>
    <dbReference type="OrthoDB" id="63989at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990604">
        <property type="term" value="C:IRE1-TRAF2-ASK1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070059">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036498">
        <property type="term" value="P:IRE1-mediated unfolded protein response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045133">
        <property type="entry name" value="IRE1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954:SF28">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954">
        <property type="entry name" value="IRE1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30768" checksum="4C8CC44955D5164C" modified="2020-12-02" version="1">MGTSVYVGILENGSEVAVKRMLMDSCKDAAENEKNILSLINTKKSPFIVSYRHFFKDTRFMYLVVDLCEETLDDHVHSQNLHHLRIHGRRLIKEMLTGLKFLHDQGILHRDLKPSNILVDVDGHIRLADFGISRVLNEDETTAHTDSKGTEGWMAVEVIQTIDQIGRGRFKKKSDIQSAGMVAFFILTKGGHPFGSIKYERMTNIVAGNPVYMVTLDGPDARQFISSLISHTIRDRPYAHEALLHPFMNNIDYEERARAASILFLEEYHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L4E4</accession>
    <name>A0A7D9L4E4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089504</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013571">
        <property type="protein sequence ID" value="CAB4025381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L4E4"/>
    <dbReference type="OrthoDB" id="9991317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000127">
        <property type="term" value="C:transcription factor TFIIIC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006383">
        <property type="term" value="P:transcription by RNA polymerase III"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039340">
        <property type="entry name" value="Tfc4/TFIIIC-102/Sfc4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23082:SF0">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23082">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16681" checksum="1C1A156F61A036DC" modified="2020-12-02" version="1" fragment="single">VARTFYKVGRFSDLEYIIKCAMSSAQFSGIKIYQRELDFLGVTACYCNGNLTAAFNVIRVVLLRNADCKHLWNMFARMMVGNGDSKHQKFCLRLLLKNPESFSLQMINGHNALTSGNYRYALGKETTRLKITRILIKVHITSIYLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8X9</accession>
    <name>A0A7D9L8X9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Multiple epidermal growth factor-like domains 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049389</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015068">
        <property type="protein sequence ID" value="CAB4027858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8X9"/>
    <dbReference type="OrthoDB" id="5971175at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="633"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="633" mass="70081" checksum="05EAFCF685E92BFD" modified="2020-12-02" version="1" fragment="single">MKNFLVCSVLLLAFFNNRVQGKCNPLCGTGVYTHAGTCQPSGRCLCFWGWTGPNAQYTTNNRILADYCRIPCHYTPDYKNPDCVNSNQTGECKVPTSTTPTMPCDPKCGNPPYFGRGICLSDGRCLCWWGWTGPNACYVEDGTYRNRIIADYCAKACHFTPYVRNPKCLNGSWDGGQVTKTTEKTPTEVQITAPNRKCNPLCGTGVYTHAGTCQPSGRCLCFWGWTGPNAQYTTNNRILADYCRIPCHYTPDYKNPDCVNSNQTGECKVPTSTTPTKPCDPKCGNPPYFGRGICLSDGRCLCWWGWTGPNACYVEDGTYRNRIIADYCAKACHFTPYVRNPKCLNGSWDGEQVTKTTEKTPTEVQITTAPNRKCNPLCGTGVYTHAGTCQPSGRCLCFWGWTGPNAQYTTNNRILADYCRIPCHYTPDYKNPDCVNSNETGECKVPTSTTPTKPCDPKCGNPPYHGRGICLSDGRCLCWWGWTGPNACYVEDGTYRNRIIADYCAKACHFTPYVRNPKCLNGSWDGEQVTKTTKKAPTEVETTAKIPCDPLCGTGVYTHAGTCQPDGRCLCAYGWTGPHAQYTAGNRILADYCRVPCHYTHDYENPECVNSNHTGDECKVPDSTTPTTPCDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LBM2</accession>
    <name>A0A7D9LBM2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FP protein C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016340">
        <property type="protein sequence ID" value="CAB4029688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LBM2"/>
    <dbReference type="OrthoDB" id="7484295at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057251">
        <property type="entry name" value="FP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25298">
        <property type="entry name" value="Baculo_FP_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FP protein C-terminal" evidence="1">
        <location>
            <begin position="216"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30834" checksum="66927BCF672E8CA7" modified="2020-12-02" version="1">MPETIKSLKIENDSLKSQIVILQKDFKSFQEAMDKKLAKLPRVCNDKTVNLSDSEAEKSLNFLGNQVDDMSRFREFAEKEFKQLNKRLEGVAKKSAELSDAIDDIQKYSYQYNVKLLGVPECNERETAATSTELCVRLFNGMGVEVKAHDIDIAHRVPHRNAFATGPKPIVCKFVRRVVKDEVIRQRKEASKVKSEALGLSSDASLCNVLVMEHLTPKAQNLLTEAKRFSKQHNFKFCWVKNAKIYLRKNEESRHIFINNLSDLEGLNVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHH4</accession>
    <name>A0A7D9LHH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039484</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018702">
        <property type="protein sequence ID" value="CAB4032794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHH4"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18668" checksum="3C4CB189F8A6F1A8" modified="2020-12-02" version="1" fragment="single">MDNYRPVSILPVVSKILERAVHTQLYKFMVDNNLLSPYQSGFRKRHSTETACISFTDSIRRGMDQGMLTGSVFIDLRKAFDTVNHGLLLEKLHGYGVTGGELDWFKDYLSNRKQLVDYLNTYSDPLPLNSGVPQGSILGPLLFVIFVNDLPNAVNSCSILMYADDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVY8</accession>
    <name>A0A7D9LVY8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CxC5 like cysteine cluster associated with KDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067097</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027774">
        <property type="protein sequence ID" value="CAB4041111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVY8"/>
    <dbReference type="OrthoDB" id="10011386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041539">
        <property type="entry name" value="CxC5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18718">
        <property type="entry name" value="CxC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxC5 like cysteine cluster associated with KDZ" evidence="1">
        <location>
            <begin position="160"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="28961" checksum="6F754F0B8E577B73" modified="2020-12-02" version="1" fragment="single">MAQSKKKRTSGMFDFDNMLSKFEEEKRNLNTVRERLKAVNKVDLVRLMSDACMLMEDEALQLLAAKLSIEGLLNLRNAVQHVPKNIPRVVNGVSLRSTFMFTTFKSLPSQHMGIKNMSMEDFQTYVKFVETYCPIFLSEKKECDNLWKLTQAQHLPYNTFLTPPVARCVQCQKDLTVRNNPSKAKLFTLEGPIPCTKITLECRCCAYVYGICNYSDESGSRFYPSTYNIELIEVSNVTYFDAKLYKWFPSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MDF9</accession>
    <name>A0A7D9MDF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077679</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035984">
        <property type="protein sequence ID" value="CAB4044734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MDF9"/>
    <dbReference type="OrthoDB" id="5946438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11882" checksum="D3597DB88E0A9722" modified="2020-12-02" version="1" fragment="single">SLQQGRMGSDQCKDLGVVADQYDAVICVGVFTAGHVKGKGLDDVVHVVKPGGLASIGVNGNAADDPRYQYHEKMNQLTVEGKWKLISKYYEQHYLKEGSAWFYVYQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FIJ1</accession>
    <name>A0A6S7FIJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Collagen alpha-4(VI) chain-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A017111</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000199">
        <property type="protein sequence ID" value="CAB3979445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FIJ1"/>
    <dbReference type="OrthoDB" id="5986259at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005581">
        <property type="term" value="C:collagen trimer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007154">
        <property type="term" value="P:cell communication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01450">
        <property type="entry name" value="vWFA_subfamily_ECM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038081">
        <property type="entry name" value="CalX-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003644">
        <property type="entry name" value="Calx_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050525">
        <property type="entry name" value="ECM_Assembly_Org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020">
        <property type="entry name" value="COLLAGEN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020:SF20">
        <property type="entry name" value="PH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03160">
        <property type="entry name" value="Calx-beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00453">
        <property type="entry name" value="VWFADOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141072">
        <property type="entry name" value="CalX-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-0176">Collagen</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3979445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="522" mass="57030" checksum="66EAF0C0B75ACED9" modified="2020-12-02" version="1" fragment="single">MDVKIIACMLLFLGIIEAADKCNTPIEIAAVVDVSDNLSPSNLPDVQNFLKRVANIFHVSSHASHMSVILAGTQVRVAIGLQDTGANRNKFPKAVDKSVKPLGGAWSLDRGLKLVKEDVFTTESGVRDFLPKVVFIITNGKQSNGDSDVLESRAKDLHDMGVYVYAVGIGDGVSRDELVLMVKNASEQLYQVDGFKDLDGLAVKISNDICQRNYIDSLAVCKTKVDVGFIVDSSGSISRTGYLNIKNFMKSIAVYMGFKPNRTHVGVVLYSKTAEMYSRFGSQHTMRKLFRILLKMPHLQDVTRIDLGLHIADTQLFTTEAGMREDVKKIAILFTDGEQTTDGVTDLIPLKEAANKLKERGIVVFAVGIGMGARRGQLLEIAGSGEYVIMLESFTELQQSAIKIATSTCQQVEGRPVINFTRSVYDVNEDRKAVVGIYVTQNKVIAPLTVSIHASPATAGNGDFFATVKNVTFQLGETRKQIEIEVVDDRWVEPTESFVLSLASSSPAILGEPSSVNIIDND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FMM7</accession>
    <name>A0A6S7FMM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A004475</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell projection</location>
            <location evidence="1">Cilium</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000034">
        <property type="protein sequence ID" value="CAB3977189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FMM7"/>
    <dbReference type="OrthoDB" id="2123594at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001669">
        <property type="term" value="C:acrosomal vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005879">
        <property type="term" value="C:axonemal microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027012">
        <property type="entry name" value="Enkurin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052102">
        <property type="entry name" value="Enkurin_domain-protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21490:SF0">
        <property type="entry name" value="ENKURIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21490">
        <property type="entry name" value="ENKURIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13864">
        <property type="entry name" value="Enkurin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51665">
        <property type="entry name" value="ENKURIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0966">Cell projection</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3977189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="269" mass="30696" checksum="13B78E5968F4FE04" modified="2020-12-02" version="1">MSTALAMGYLGARSRQQEESIYNLIPTIPPTEAKPPRYKSKFAETVRYDLRTNKTNAKTMGPAKVQLAKPKEFLAKHSKDKIIPEGKSQFSYPDAGSRKPAVPKHTDKPAIMGVKSNKNFITTNAVENIMSIPKKAEKKYADTKIGATHQLEPSGLTPKYRNKKDFGKTPQYLEMRKKEIEHAQIEYDAYIRERFRQGAMQQLSEGERQSIIDGLKTNWEELHHQYQGLSVVTDTAPKKARKESLEAQMKQLERDIETMEKHKVIYIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FP99</accession>
    <name>A0A6S7FP99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000384">
        <property type="protein sequence ID" value="CAB3981398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FP99"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17619" checksum="96C514998E9021EE" modified="2020-12-02" version="1">METTFPRGTFKLGTVCFYKDTCGKATKQLVCINEYESFNRRIKTFKIKNLQRDTFMNREDCNIDIDCISKTISCLYWSEYTLDFESLEYFLQVCQTIEDKRVIAISMIALFGTIYSDFIIKELSALLYGKSYAVELWKDGIMSFKTLKIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FTS7</accession>
    <name>A0A6S7FTS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000612">
        <property type="protein sequence ID" value="CAB3983434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FTS7"/>
    <dbReference type="OrthoDB" id="5948131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="876" mass="101698" checksum="4740B56C5795C256" modified="2020-12-02" version="1">MISESIRHRKKSNIIFCFSETHLNSNWSDDGLQIREFNFIRKDRTYASGGGILIYIPETINFQYRNDFSLQENNYPLEFIWLEFKHPNSKPFLMAIMYQPGNNTLWRDKLNYVLDMADNEHKEIIMLGDLNKNFQDKHSYQQLHVLTSQYQLKQLIDAVTRPISGKTIDLIFTSKEDNVIKSGVLDIGMSDHLPFFISRKINSRISIKHGLHTTISYRRKKDFIASDFDNDLVGEIPLSLYEIFDDPNDLIDCWYSHFMKILDRHAPLIKRRVRNNKLPGWFNSEVRCFSRKRDYFLKQFLKTKNSDTWCTYKKWRNRTVHIIKKSKEDYYKNLLTDNVHNPRQLWKILKDILPTNDTVSQLTLNINGKEISDPIEVGDLFNEYFFSIADNFDISLLNNPINTHLPIATNHIKFTIPLITIDDILNLAAELDQNKSTGLDGIPAYFIKSSIYSIAPIILRICNMSIKNGIFPNMWKKARLIPIYKTESRTERNNYRPISILPILSKLLERHVANSDVKFLTENDILSSCQHGFQAHHSCESTLILICEHLLDNIEQGLINGIALIDLSKAFDLVDHRLLLQKLEQYGITPIALKWFKSYLNDRYQVVQIASSLSNPALIKSGVPQGSILGPILFLIFINDLPSYVGSSKPFLFADDSTLISSGSDLHELSVSLKSDMTSVSRWTNHNKMSLNPGKTKIMKIYSQSKFPDLSPITIEVNNNNVKEITSAILLGVTLDQHLKWDRQINTIYNIINSRLYLLKRIRSYLTFQSRIQLYYALIYPHLLYCSTVWGNANNDLITCLLKLQKRAARLILEQSTEVPSIVLFRKLNWIPIFNLIKMRKILLVFNTLKTSLKTCCNKSFYRDTFFIPCTSLFYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2L3</accession>
    <name>A0A6S7G2L3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A077453</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the DEAD box helicase family. DECD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020000261">
        <property type="protein sequence ID" value="CAB3980141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2L3"/>
    <dbReference type="OrthoDB" id="196131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd17950">
        <property type="entry name" value="DEADc_DDX39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18787">
        <property type="entry name" value="SF2_C_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000111">
        <property type="entry name" value="DEAD-box ATP-dependent RNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000168">
        <property type="entry name" value="DEAD-box ATP-dependent RNA helicase 56-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47958">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE DBP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00038213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3980141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="431" mass="49343" checksum="2A83D712F8D8C991" modified="2020-12-02" version="1">MAADHEDGDVSELLDYEEEEAEAPNAGTVAVKDTKKDVKGAYVSIHSSGFRDFLLKPELLRAILDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGQVGVIVLCHTRELAFQICKEYERFSKYMNNIKVGVFFGGINIRNDQQTLKANCPHIVVGTPGRILALARDKSLNMKHIKHFILDECDKMLEQLDMRRDVQEIFRTTPHEKQVMMFSATLAKEIRPICKKFMQDPMEVYVDDETKLTLHGLQQYYVKLRDNEKNRKLFDLLDLLEFNQVIIFVKSIQRCMALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKVLNDVQDRFEVNIGELPQEIDITSYLEQAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G492</accession>
    <name>A0A6S7G492_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A074012</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endosome membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Late endosome membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Lysosome membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
            <orientation evidence="3">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the CDIP1/LITAF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000635">
        <property type="protein sequence ID" value="CAB3983622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G492"/>
    <dbReference type="OrthoDB" id="4713066at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031902">
        <property type="term" value="C:late endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006629">
        <property type="entry name" value="LITAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037519">
        <property type="entry name" value="LITAF_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23292:SF6">
        <property type="entry name" value="FI16602P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23292">
        <property type="entry name" value="LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10601">
        <property type="entry name" value="zf-LITAF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00714">
        <property type="entry name" value="LITAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51837">
        <property type="entry name" value="LITAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3983622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14497" checksum="A27EFD2E48684211" modified="2020-12-02" version="1">MEPDTTAKTQVSSHEQPPPYQASQQQVVYPPSAQHNVTTNTTIVAQPTVVPIMATMLFGPMPVGMTCPHCQAQIVTSTSYEPGMLTWLFCGGIAVVGCWLGCCFIPFCIDDLKDCRHTCPNCKNFLGVYRRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5R7</accession>
    <name>A0A6S7G5R7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Major facilitator superfamily associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A005251</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. MFSD6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000722">
        <property type="protein sequence ID" value="CAB3984317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5R7"/>
    <dbReference type="OrthoDB" id="515887at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051717">
        <property type="entry name" value="MFS_MFSD6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172:SF2">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="65"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="96"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="126"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="332"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="373"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="415"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="454"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="480"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="522"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="554"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="612"/>
            <end position="631"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily associated" evidence="8">
        <location>
            <begin position="61"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="201"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="212"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3984317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="662" mass="75049" checksum="26FFD233424EA6A9" modified="2020-12-02" version="1">MASPRQSPNLHPIKFTRNPELKNSPDDISQLFQNAEDDSSETGNKRSSVTCSSWFGEPDLMVYKLFYLFFYAATALFAYLPLYYKKSLLLDHHHVGILMGIRPFCGFLGAPILGSFADKFNKYKSTLYTGLLTYIIVYLSITFVNGVPKDCNVQARINHTNTSHKLIGETKFLNEEKQSQTLKVYNTEKFVQHLANTIAQRNDPLLNDEQSRPSFPESSNVDKSGGNWKLLDKPVYFSEDVKQLPHGRVVFKKFNSNDQVRVDTMNVEANSGDMRYGIPDTGDNMTQEIGDYDQYWLYAPETAGEDTWPIDVYRNEPHKNSPKEDKKIRNHIFLIILLLMLTAELIGAPILSLADTATLQTLKKEPYRYGRQLVWAAVGFGIMSIITGSVLHYTVSKKDEINNCPEKMGERYKPVFYSCCALLLIAFFTTFKFKFKTYEGKENGRCSFFDCIKYFNNVEYLLFAFLAFFTGLSAGLTDSFLFVHLIRLGATPLVLVVTTTVQSVSKVIFFYLSPMLILKYGYFPIIYAGMLTSVVTFLYYSFLISPWMVVPIELLSGLSYSCVWATLVSYVGAPPKIGATLQGIVHSLHIGLGRGIGGLFGGMILLRYGFDILFQSFSLTIVIVVAVVSLVRYRRKDEVEPIWSKLWDYSPVAPYDTLADEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GI94</accession>
    <name>A0A6S7GI94_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000778">
        <property type="protein sequence ID" value="CAB3984731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GI94"/>
    <dbReference type="OrthoDB" id="10071804at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034632">
        <property type="term" value="F:retinol transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026612">
        <property type="entry name" value="STRA6-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14752">
        <property type="entry name" value="RBP_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17981" checksum="C0115AB11C288026" modified="2020-12-02" version="1">MAVALLTYLCMLIIAATIFRDYDFPKNAISINNRNVSINNRNVYLVFSYFWFFVGLPMGFNAYICYLHVQTAYRNPVLRVFCQILSDETRHNKEREWTCSAQARARWFLALTLARNPQLASDRKPGGVEAPQPVQGGCVKHGDVKIEVGRYGLIQDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKB3</accession>
    <name>A0A6S7GKB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024968</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001190">
        <property type="protein sequence ID" value="CAB3987537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKB3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="370"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="370"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="839"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="839" mass="95138" checksum="DFCB987016AEC63F" modified="2020-12-02" version="1" fragment="single">QCSQNWYAVLTVLEQSLLELKRRIIVIATVYLRSDNAGCYHCAPLLLSLPSLGKRVGVNISRYDFSEAQSGKDLCDRKIAPMKSHLHRYINQGHDVVSAQQMWEGLNSGGGVRGCYAALFNKDMMHGSQLRRLLQDFHYGAVCRSISFAYACEAVLADSTNRCSPRRRNDSIRSSLDEIYIPRKLSSSPFSGERYETSCKLLEGRHDLVLQVYLTHVSRCKFTGIWCKENIEKHNSILLSLLRQRRHKNTNCIFPDLLSAVNSMLNSGAETNILPMSIYQQLKHESHKLGKPTMKLTAYGGAELPNLGSCFVFVKVPDIQKLWKIQVQVVDVNGPMIIGNKSAQNLGLLKLNWAIYVGNHDNSFNRHISNTSATTSNQPSISAKQLNSTTSPLDDNPPDVRGKRPFPLTKEYLLEEYSDVFTGVGCFPGDPYHIEMIPDAVPVQHAPRQVPIQLQTPYKDELDKLVESGILSEVQNEYTPWVNSTVVTQKPNGTIRLCLDPRDLNKVIKRNPYYVRTIDDVIPKVSGATHFSILDARCGYWQVELDEESSRLCTFNTPWGKYRWNRVPFGLTCSGDIFQEKMDATFGKLDGLSGIADDTFIYGKNEAEHDQRIIDVLETARKNNVRFNPDKFQFKVEEASFFGLTWTPGGIKPDEHKIKSIRDMPSPSNLTELQSFLGMMTKKDRLLLRMSKTNGSNSEGYNDAKQRQQIKNSFSCVKMFRNPRKKTWTPGKVIQESNKPRSYVVETPNGGEVRRNRIHLKPGRDAVELRRNSNAEAWSHIILNGRDAKSNNCDQKLKTDMGVKVVVLRHDDHDQEMKALFSIQQTDLTSIELSWNVII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTN1</accession>
    <name>A0A6S7GTN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002256">
        <property type="protein sequence ID" value="CAB3993402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTN1"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="332" mass="37805" checksum="D410E494C6A101C7" modified="2020-12-02" version="1" fragment="single">MDREIKTPVVQTCTSQQLRRKALRTEMTLQQLLDQGRAYELSHQQAQEMENNNTESVNQMKTAPTRNYFSKNFNSQRQRQKQESTKLCYFCSKPYPHPGVCPAKGKTCRLCGKLNHFAVTCRSSPQKQQHRHHESDKCQTVKYVNEENASDITNLAKVKFIIDTGATVNLLEEKDFEALKPEIKLQHSSINIYPYKSDKLLRVLGKLTATVYVESRKRIDAAEFFVVSNNGRLGGSLLSYNTAKHLGLIAITNAVDTAKNTTVSCNVAIPEELFNGVGKLKDHKVKLHIDESIPPVAQTHRRIPFHLRKQVEKKLEEMEKDDIIEKTEGPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GYG9</accession>
    <name>A0A6S7GYG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002646">
        <property type="protein sequence ID" value="CAB3995349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GYG9"/>
    <dbReference type="OrthoDB" id="5951866at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004622">
        <property type="term" value="F:phosphatidylcholine lysophospholipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00229">
        <property type="entry name" value="SGNH_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383:SF5">
        <property type="entry name" value="SGNH HYDROLASE-TYPE ESTERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="33493" checksum="C32A0264467CBC51" modified="2020-12-02" version="1">MTVRSLRASPYARTINKYCLYFLAADLVLICVVVYFWYSLCNGSFCTTMPRKPRTNILAFGDSITKGFVKHEPVETYYPYSESLMKTLNRVHSKDVIFVVENHGLNGDRAIGTAQARLRAALREKQYEWVIIVMGTNDLSRYFKSDNFKKLYENDSVFLDKLFDNIKKLCEMALRTNAIVILGTITARQCEEQTQICDSLMANREALNAKIRNFVMDTKELLILADFDKELQYKTMSEKKRKQYWQDDVHFTETGYEAMAKLVYKKMLPYLPEMMQQPHESKNFTNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HA02</accession>
    <name>A0A6S7HA02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047271</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002105">
        <property type="protein sequence ID" value="CAB3992701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HA02"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28526" checksum="0601077EDDF6A17C" modified="2020-12-02" version="1">MKDAVSNILEQFNNCFGKYPKFAQFDQGTEFYNKEVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDLTDNYNSSVNRSIKTTPDSVNDSNWTEVWKTLFSHNLGKPSEPKFSIGESVRISKYKSVFTKGYEATFTEELFTVTEVYHGHPNTYTIKDSADEPIIGRFYEQELYSAEGREPDFRIEKVLRRRTVKGKKMALVKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCQ5</accession>
    <name>A0A6S7HCQ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A009885</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002289">
        <property type="protein sequence ID" value="CAB3993587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCQ5"/>
    <dbReference type="OrthoDB" id="498204at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005759">
        <property type="term" value="C:mitochondrial matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.110">
        <property type="entry name" value="Aminomethyltransferase beta-barrel domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1400">
        <property type="entry name" value="Aminomethyltransferase beta-barrel domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.9.10">
        <property type="entry name" value="D-Amino Acid Oxidase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="entry name" value="Probable tRNA modification gtpase trme, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GcvT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCVT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847:SF193">
        <property type="entry name" value="PYRUVATE DEHYDROGENASE PHOSPHATASE REGULATORY SUBUNIT, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847">
        <property type="entry name" value="SARCOSINE DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="Aminomethyltransferase beta-barrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54373">
        <property type="entry name" value="FAD-linked reductases, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103025">
        <property type="entry name" value="Folate-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="2">
        <location>
            <begin position="57"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="FAD dependent oxidoreductase central" evidence="5">
        <location>
            <begin position="420"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="domain" description="GCVT N-terminal" evidence="3">
        <location>
            <begin position="474"/>
            <end position="749"/>
        </location>
    </feature>
    <feature type="domain" description="Aminomethyltransferase C-terminal" evidence="4">
        <location>
            <begin position="768"/>
            <end position="843"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3993587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="850" mass="94263" checksum="E047D4C5EEB655AE" modified="2020-12-02" version="1">MQNACKHFTNLTRKYSLFGRSVLRGRSYGFEKRFARKLSNAVRTADNDVEVPSSSQVVICGGGVVGCAVAYHLAKLGWTDVILLEQGSLACGTTWHAASLIGGMKNQSVETKIASYGVELYSQLEEETGLGTSWKNCGSLLMARKEDRLTFLKRQHGKARAFGIASEFISPSEAGEKWPNMRIDDLLGVLWFPNDGVAMGSDITQSLAKGAKMHGVKVVEGIAVQSIETKNNAVSSVTTDKGTIDCEIFVNCAGQWGREVGLKSNPVVNVPLHSTEHFYIVTKPMEGIGSMFPVLRDPDGRTYYREWNGGILAGGFEPKAKPIFYDKIPDKFEFQLFAEDWDQFEVLLKEIVHRLPQIENAEIRQMVNGPESFTPDGKILMGAVPEIDNYYIACAMNSHGIVSAAGVGRAIAEWIENKGPTMDLASVDIRRFSRHQGNKTYLRDTIGYIVGYLYALPYPLSEPPAARNMKSSPLYDILQAQGASWSRVMGWECPAWFARDGVDPKDINETFGKPEWFDVVRAEVEACTSGVAVADISPTLKIEISGSSAVNLLQYLCSSDVDVSSGRAVRTLIMNSNGGIESFCTVYRLAHDRFYLIDSITQMTRLLHWISKYSKNYENVTVTDMTSHYSGLSLIGPASTELLQSLTQTSLDVEDFPLNTVKSIDVAYASDVLVVRGNDDWKLFMPPEFVRNVYHQVVENGKKYEIRNVGLYALNSLRIEKGIPAWGSELSHSILPQNAGLNSLVDLSKKTEFISDRGILSEDPSKQRLVHVTMRCYDDDNFPWGGEPLLHEGNIVGMTTSASYGFQGNKHVAMATVELPDDDVRHRDFELEIASRSYPVDVSFVSFENE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HD36</accession>
    <name>A0A6S7HD36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Nuclear receptor subfamily 2 group C member 2 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A062540</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the nuclear hormone receptor family. NR0 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004010">
        <property type="protein sequence ID" value="CAB4001127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HD36"/>
    <dbReference type="OrthoDB" id="40902at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000122">
        <property type="term" value="P:negative regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.565.10:FF:000011">
        <property type="entry name" value="Nuclear receptor subfamily 5, group A, member 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.565.10">
        <property type="entry name" value="Retinoid X Receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035500">
        <property type="entry name" value="NHR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033544">
        <property type="entry name" value="NR0B1/2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000536">
        <property type="entry name" value="Nucl_hrmn_rcpt_lig-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001723">
        <property type="entry name" value="Nuclear_hrmn_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24081:SF8">
        <property type="entry name" value="NR LBD DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24081">
        <property type="entry name" value="NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00104">
        <property type="entry name" value="Hormone_recep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00398">
        <property type="entry name" value="STRDHORMONER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00430">
        <property type="entry name" value="HOLI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48508">
        <property type="entry name" value="Nuclear receptor ligand-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51843">
        <property type="entry name" value="NR_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0678">Repressor</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4001127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="269" mass="30921" checksum="7249B7437984DC2D" modified="2020-12-02" version="1">MGKKQKNFLCCFQCNIRVFISAVQVERCRPTLKDNQLALIGSFKSKLAENCDFGFNMEFPEDKKLTMEYVYELATRLLFHSIDWVRFTHSFKTLNQSDQVVLLRNCWTDIFLLSFVQCAKICPLEATLSLMKQNIEKVGSELDKTDVVQVEHINKVKDLLLTLERLELTATEFALLKFICLFNPDASGLTGVQEVEQMQEMAQSELQEFVRESHSSNQSRFARILLRLPAIKTISSMKVEEIFFSPLIGEVRIDHILPAILNNNGSNQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIF8</accession>
    <name>A0A6S7HIF8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sodium bicarbonate cotransporter 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053324</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002554">
        <property type="protein sequence ID" value="CAB3994857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIF8"/>
    <dbReference type="OrthoDB" id="1735926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008509">
        <property type="term" value="F:monoatomic anion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005452">
        <property type="term" value="F:solute:inorganic anion antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015701">
        <property type="term" value="P:bicarbonate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050801">
        <property type="term" value="P:monoatomic ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.930.10">
        <property type="entry name" value="Mannitol-specific EII, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013769">
        <property type="entry name" value="Band3_cytoplasmic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003020">
        <property type="entry name" value="HCO3_transpt_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016152">
        <property type="entry name" value="PTrfase/Anion_transptr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11453">
        <property type="entry name" value="ANION EXCHANGE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11453:SF47">
        <property type="entry name" value="ANION EXCHANGE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07565">
        <property type="entry name" value="Band_3_cyto"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55804">
        <property type="entry name" value="Phoshotransferase/anion transport protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Band 3 cytoplasmic" evidence="1">
        <location>
            <begin position="7"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3994857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="35990" checksum="311EEFF2F7ACAC04" modified="2020-12-02" version="1">MSCGRPNGFVELEELVHRDGARDEWEETARWITLEETVESDRWSKPHVPCLSLQGLQNVRDILETCPIVTDLAETEMTAIVEALVNEMVRFGTLEADLRDSVVSLLLLNHRHKNQTKASPLSRRLTRHFSIDVPEEDKDPVPVDEDPVTFSRFSCPCVCLQVCHKKKNNASEGGSTGHGTLATSRDMDLAEFRLPEKSESTTVLVGSVNYLKHPISIFARLAEGCLLGNLMEVNVPVRFLFVLLGPEDEQNKYHETGRSMAAMMSDKFFLSLVYNFKAYSQTNGNVLKLFLYTNKANATALITIVPFLLFLLWLRFLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMG7</accession>
    <name>A0A6S7HMG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004302</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005517">
        <property type="protein sequence ID" value="CAB4006474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMG7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7121" checksum="2093343600211A68" modified="2020-12-02" version="1" fragment="single">NKPVKQVYDCKTLGVTADQYLSWKNNTENICKKITSGISAFPQIKEFVEKDTLVSVCNSIVLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMG8</accession>
    <name>A0A6S7HMG8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">5-demethoxyubiquinone hydroxylase, mitochondrial</fullName>
            <shortName evidence="8">DMQ hydroxylase</shortName>
            <ecNumber evidence="8">1.14.99.60</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Ubiquinone biosynthesis monooxygenase COQ7</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A021695</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the hydroxylation of 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) during ubiquinone biosynthesis. Has also a structural role in the COQ enzyme complex, stabilizing other COQ polypeptides. Involved in lifespan determination in a ubiquinone-independent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>a 5-methoxy-2-methyl-3-(all-trans-polyprenyl)benzene-1,4-diol + AH2 + O2 = a 3-demethylubiquinol + A + H2O</text>
            <dbReference type="Rhea" id="RHEA:50908"/>
            <dbReference type="Rhea" id="RHEA-COMP:10859"/>
            <dbReference type="Rhea" id="RHEA-COMP:10914"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:84167"/>
            <dbReference type="ChEBI" id="CHEBI:84422"/>
            <dbReference type="EC" id="1.14.99.60"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
        <text evidence="8">Binds 2 iron ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Component of a multi-subunit COQ enzyme complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Mitochondrion inner membrane</location>
            <topology evidence="8">Peripheral membrane protein</topology>
            <orientation evidence="8">Matrix side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the COQ7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.14.99.60" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020004991">
        <property type="protein sequence ID" value="CAB4004763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMG8"/>
    <dbReference type="OrthoDB" id="275371at2759"/>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031314">
        <property type="term" value="C:extrinsic component of mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008682">
        <property type="term" value="F:3-demethoxyubiquinol 3-hydroxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016709">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008340">
        <property type="term" value="P:determination of adult lifespan"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000377">
        <property type="term" value="P:regulation of reactive oxygen species metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01042">
        <property type="entry name" value="DMQH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01658">
        <property type="entry name" value="COQ7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011566">
        <property type="entry name" value="Ubq_synth_Coq7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11237:SF4">
        <property type="entry name" value="5-DEMETHOXYUBIQUINONE HYDROXYLASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11237">
        <property type="entry name" value="COENZYME Q10 BIOSYNTHESIS PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03232">
        <property type="entry name" value="COQ7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="Ferritin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0408">Iron</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="8" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="6 8" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_03194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4004763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="208" mass="23558" checksum="5A8994DB9B786FED" modified="2020-12-02" version="1">MAISRSVIFQIFHRPSAISCRCLCTSSKRRLSRADPLIDKILRVDHAGEVGANRIYEGQMAVLGSSKSAPVIKEMWEQEKEHVKKFDELLPKYRVRPTALLPFWNVAGYVLGAGSALLGEKAAMACTVAVEEVIGEHYDNQLRELLEDPEHLDKHEELLDVITKFRDDELEHLETGLEHDAMQAPFYSTMKQVIQLGCRTAIWLAEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HP62</accession>
    <name>A0A6S7HP62_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Helitron helicase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072761</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005069">
        <property type="protein sequence ID" value="CAB4005000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HP62"/>
    <dbReference type="OrthoDB" id="5988894at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="48"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="551" mass="63647" checksum="543659BC74220283" modified="2020-12-02" version="1">MKLLLGQSQVALRKCKLGNRTLNAGQLKTPEGLESLIRHDEGYKFLRALRGSPPYFEKAKKDLFAMIRQLGPASLFCSFSSAETKWNHLLRILGKLIDHKDYSDKELDNLTWDEKCRLIQSDPVTCARHFDYQFNTFLKQFLMSDIAPVGKIKDWFYRVEYQQRGSPHIHMLIWLENAPVFGVDKDEDVTAFIDKIITCGKPENDSKLLEFVNRQTHKHSHTCRKNAQKICRFNYPQPPMRSTQILYPLDDDTSRTVIRSRKDVWKDIKNKLNDLKEGEDMTFDQLLKDLDVSEHDYILAIRSSLNCPTIFLKRSPNELRINNYNPACLQAWRANMDIQFVLDVYACAMYIVSYISKAQKGMSELLCKVCAEAKQGNSSIKQQVRDIGNKFLNSVEISAQEAVYIILQLPMRKSSRNVVFVNTSPSCDRVELLKPLSEIEKMSDESEEIHSGGLLQRYAERPDCLQNTTLADWAAWYDSCGQRKYKKTLKKSDVDHLPLEDEDENNDDELCDENTESCISSKKSIKKRTQARIIRAFGLIKKLNKKNIIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXV7</accession>
    <name>A0A6S7HXV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">MAM and LDL-receptor class A domain-containing 1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A020631</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003613">
        <property type="protein sequence ID" value="CAB3999551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXV7"/>
    <dbReference type="OrthoDB" id="93664at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00190">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.10:FF:000077">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033116">
        <property type="entry name" value="TRYPSIN_SER"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24252">
        <property type="entry name" value="ACROSIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24252:SF7">
        <property type="entry name" value="HYALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00629">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50060">
        <property type="entry name" value="MAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00135">
        <property type="entry name" value="TRYPSIN_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3999551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="34566" checksum="E43B0433AD58E393" modified="2020-12-02" version="1" fragment="single">MYGASTGSLIVYQNMGSQLMELFKKSGEQGNQWKKVELQINNGSRYSVVFSGVTGSSYQGDIALDEISITSGQCSGSPGTPKPPSGSCGQKGYGLSDFARIVGGQEATPGEWPWQVALLRGTSPFCGGSLVSNQYVITAAHCVRSTDWNSVTIRVGEHDMRVNEGHEQDISIARNGITVHPQYNQLTQYNNDIAVIRLSRSVQFTQRIKPVCFNSGIDFTGQRCYISGWGRLQSGGSTPNVLQEAQVPIVTPQQCKESYGSSSITDRMLCAGYSQGGTDTCQGDSGGPLVCQHSDRSWYLTGVTSWGRGCASAGYYGVYAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HY89</accession>
    <name>A0A6S7HY89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phospholipase D1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A038634</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1,2-diacyl-sn-glycero-3-phosphate + choline + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14445"/>
            <dbReference type="ChEBI" id="CHEBI:15354"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57643"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="EC" id="3.1.4.4"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003226">
        <property type="protein sequence ID" value="CAB3997917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HY89"/>
    <dbReference type="OrthoDB" id="14911at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004630">
        <property type="term" value="F:phospholipase D activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009395">
        <property type="term" value="P:phospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060627">
        <property type="term" value="P:regulation of vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015679">
        <property type="entry name" value="PLipase_D_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896:SF76">
        <property type="entry name" value="PHOSPHOLIPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896">
        <property type="entry name" value="PHOSPHOLIPASE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56024">
        <property type="entry name" value="Phospholipase D/nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3997917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="9345" checksum="0098EAE804AFD8A2" modified="2020-12-02" version="1" fragment="single">ELTVFCWTHRKQSEWMAEIVRTMADTGSDWTKEHAYDSYAPQRQSVPAQWFVDGEDYFYAVSKALDEAKEEIYITDWW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6Y6</accession>
    <name>A0A6S7I6Y6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009338</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007666">
        <property type="protein sequence ID" value="CAB4012867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6Y6"/>
    <dbReference type="OrthoDB" id="10068383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="17903" checksum="0A7A550C53CCB72E" modified="2020-12-02" version="1">MNITDKKQRAMPLHFAGPAVDEIFDTLSDTGEAKDYDKAIEALNAYFIPHVNTAFEEYNFRHAKQNQSETLDAFHTRLCQLSQNCSFTDVDKEIKDQIVVGCSSQKLRRKALREDPTLKNLLDAGRAEETSQIQAQFVEKQESSQNINAIKTGALEKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICS5</accession>
    <name>A0A6S7ICS5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="6">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">DNA 3'-5' helicase BLM</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A009727</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020008457">
        <property type="protein sequence ID" value="CAB4014813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICS5"/>
    <dbReference type="OrthoDB" id="10261556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032284">
        <property type="entry name" value="RecQ_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018982">
        <property type="entry name" value="RQC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16124">
        <property type="entry name" value="RecQ_Zn_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09382">
        <property type="entry name" value="RQC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-0347">Helicase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00044542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4014813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="30649" checksum="B3BAEF55DB91A35C" modified="2020-12-02" version="1" fragment="single">MAYHLKQRGVKAVYYHGQLDLFERNNNATTWLEGRSDVMCVTNAFGMGIDKRDVRFVIHHSMPKSNEEYFQEAGRAGRDGSSSSCILLFRFQDRGKLLKHISEIEDDAHKLNAKKRLDEITKYCVDNKCRKQSMLNYFGQTSQTGLCQMCDVCLNSLDSSTSQDVTSHAMDLINCIIEILGVLAKVSPKCIIKVYRGHRTKDIVEKGLHTLPSFGKGKAIFKNDKGAFKLIHVLIAMGFLSENLHNAKDANMTPFITVEDHSDLSNGIRTIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDT2</accession>
    <name>A0A6S7IDT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010661</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008773">
        <property type="protein sequence ID" value="CAB4015587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDT2"/>
    <dbReference type="OrthoDB" id="5976606at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="390" mass="45141" checksum="F6193BA106F87EC8" modified="2020-12-02" version="1">MDSLSKQNNGYKYLLTVIDVLGKYAWVEPIKTKTGESLVLAFRKLIKKGRKSEKLYTDKGTEFTNRMFQKFLKENNIRFFTTHNETKTSIVKRFNRTLKGKMWKYFTAKNTVKYIDIIQKLVKSYNHSRHRSIGMKPADVNKDNEGFVCQKLHGEEPHKSIYYKFNIGDQVRISKARRQWEVALIGLHFPYTWSTIRKGVQQTFLYKNGSSPYQTVVLKDTHYSSIDKLTKELNASMSKEEQTKVKFSYIRSSCKFLVDVKHGTTVWVTSDIATILGFDQDTCTLIEKKTLSPYVADINGGFSSMYVCSDIVDVQFVGDVKVQLLMIVNIEGEYGKNIHASFRNLQYVPVKVNSFESIEIHIKNDRDESVSFASGKSTLHFRQKISQYFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDT6</accession>
    <name>A0A6S7IDT6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Guanylate cyclase soluble subunit beta-1</fullName>
            <ecNumber evidence="3">4.6.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Guanylate cyclase soluble subunit beta-3</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">Soluble guanylate cyclase small subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A011285</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Mediates responses to nitric oxide (NO) by catalyzing the biosynthesis of the signaling molecule cGMP.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.2" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020008607">
        <property type="protein sequence ID" value="CAB4015159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDT6"/>
    <dbReference type="OrthoDB" id="6127067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008074">
        <property type="term" value="C:guanylate cyclase complex, soluble"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004383">
        <property type="term" value="F:guanylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019934">
        <property type="term" value="P:cGMP-mediated signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070482">
        <property type="term" value="P:response to oxygen levels"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.450.260:FF:000002">
        <property type="entry name" value="guanylate cyclase soluble subunit alpha-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.1230:FF:000005">
        <property type="entry name" value="Guanylate cyclase soluble subunit beta-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1520.10">
        <property type="entry name" value="H-NOX domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.260">
        <property type="entry name" value="Haem NO binding associated domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018297">
        <property type="entry name" value="A/G_cyclase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038158">
        <property type="entry name" value="H-NOX_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011644">
        <property type="entry name" value="Heme_NO-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011645">
        <property type="entry name" value="HNOB_dom_associated"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042463">
        <property type="entry name" value="HNOB_dom_associated_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024096">
        <property type="entry name" value="NO_sig/Golgi_transp_ligand-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45655:SF2">
        <property type="entry name" value="GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45655">
        <property type="entry name" value="GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07700">
        <property type="entry name" value="HNOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07701">
        <property type="entry name" value="HNOBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111126">
        <property type="entry name" value="Ligand-binding domain in the NO signalling and Golgi transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00452">
        <property type="entry name" value="GUANYLATE_CYCLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0141">cGMP biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="10 16" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00037442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00039698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00041698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00043208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU000405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4015159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="641" mass="72743" checksum="C987D04BE5687F49" modified="2020-12-02" version="1">MYGFVNHAFQKLIELEYGVEVWEEICDQANIDGDDLYSFDERRIYNDQDLSDLVSIACEVLGIKRNELMEQFGQKFFEHCHSSGWKKILPCLGGNLRDFLSGLDNLHEQLLVRYPGMQAPSFRVESKHGSDVLTVFYYSIRDGLHYMAVGMIKAAAKQLYQSDVDVSIDSYDKDEGCAKFLVRPKDFTGAIKLLPRRRQSRMVREDCQVAAYKSTIGTSTFCRAIPFHIMFDRNMVIFQAGISMRRVLPTLVVGRTTVHEVFEIVRPPIRDEFEAILSRTNSVFLLKTVEGILDSTTLSTVSEDDRENIESPTMRFKGQMLYLEEADCICYLCSPMVLNLDGLNEKGLYLSDIPIHDATRDLILLSEHRNAECALTQRLQIVTDKLQQTARELKKEQQLADKLLYSILPPSVANELRLKRPIKAKKFEVVTVLFSGIVNFAQHCNDITEPMEIVNLLNNVYMTFDNLMDTFEDVYKVETVGDKYMAVSGLPTKCNTHAHHVAKMALDMMDAANSILIRGQPFKITIGVHSGEVVAGVVGQKLPRYCLFGNTVNLASRTETTGEKGMINVSEPAYKCLQSPRDPSLKFECRGPVAMKGKKEPMITYFLSRSSSREIQNSTSNTNIRVVIKNSDSKRRMKPRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKN2</accession>
    <name>A0A6S7IKN2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A028900</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009935">
        <property type="protein sequence ID" value="CAB4018277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKN2"/>
    <dbReference type="OrthoDB" id="5987682at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776:SF4">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="64"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="395" mass="44882" checksum="FE9D18ADDF7F50BC" modified="2020-12-02" version="1" fragment="single">NHFTSETITNRVRVPLSNPASPNVSALSWSLTSKTTNDTASAHLTKKSDNSLSTLPGLKLVPLNIRSLKNNAHFLELRKFTKFNKIDVLTVSETWLNTSVTNKEIEIEGYKLHRLNRLHKKGGGVCAYIRKDIKSLVLKDLSYISETNFHQLWIKLQHKKSKSLLVCVSYRPPDNPLDCFEKYFKPNYVRALTMGKLIILLGDLNCDMLKPTPGSASLIKTTKELNLNQLIKSPTRITESSQTLVDVIFVSSPRLVVNGGVIETCISDHFPVMDNVDEKLTIFNEIFLNTLHKHAPVKTIKRERIYNSYPEENDRFSFTPVSCSEIRNIILAMPSNKSPGKDKVSMRVIKHSLPIYLKLSTVIYTNDLPSSVHHSKLESDLFTKRSDIHQRDTRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INS8</accession>
    <name>A0A6S7INS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083014</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009986">
        <property type="protein sequence ID" value="CAB4018400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INS8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="307" mass="34796" checksum="2419871881EA0600" modified="2020-12-02" version="1">MKLNIELLQSRTDALQSLANAQQVCSPITDCLRNIEILRQELSEEREITQKIEFVFKVFKGENLNVDAFGGQNCKSEPKVTNKEIPKRDETIPEFQCTEDSPEEISLIINNKPNYEADEYSVNAKYDKSSITPEFSVTAPVSESTCIALHKPTKQTREPITQSKRPVWLSKLPLINCPESILNHTDNNLTRSRKSEYKVANKESPKRDETIPEFQCTEDSPEEISLIINNKPNYEADEYSLNANYDKSSITPEIKCVEASLENSCLIVDTTLNSESKPKTVRKQSFAVVPTLPKSIKGRSKSKPNFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPA7</accession>
    <name>A0A6S7IPA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062572</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010198">
        <property type="protein sequence ID" value="CAB4018859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPA7"/>
    <dbReference type="OrthoDB" id="5946384at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16891" checksum="8AA0FE01957A4813" modified="2020-12-02" version="1">MPWIPTQQYRLAVEKEILERYFPGKVQWIDPTVSGKTRIEIEMTSNSNQIYRLRAYVPPDYPNSLPDLVVAGSPKPMPNWGISDTKHTLGTRDGCLKICHYYSKRWNPEHTFYEIFVKGRVWLEAYEGHLKTGKNLDFYLGHMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWG9</accession>
    <name>A0A6S7IWG9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Hexosyltransferase</fullName>
            <ecNumber evidence="10">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A059294</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Golgi apparatus membrane</location>
            <topology evidence="1 10">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the glycosyltransferase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020006610">
        <property type="protein sequence ID" value="CAB4009902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWG9"/>
    <dbReference type="OrthoDB" id="115198at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047220">
        <property type="term" value="F:galactosylxylosylprotein 3-beta-galactosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006024">
        <property type="term" value="P:glycosaminoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006493">
        <property type="term" value="P:protein O-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002659">
        <property type="entry name" value="Glyco_trans_31"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214:SF3">
        <property type="entry name" value="BETA-1,3-GALACTOSYLTRANSFERASE 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214">
        <property type="entry name" value="BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01762">
        <property type="entry name" value="Galactosyl_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="8 10" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4009902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="307" mass="36281" checksum="60EB54EA835DB45B" modified="2020-12-02" version="1">MLSNPPRMPKEELFLFVGIVSAPSRLDRRNAIRETWIKECQCNPDAVCRFFTDGQDPKGQALQGENISKLENESRVYGDILLADAPGGINFAIKYLWMLQWVHERYDVRYFLRLDDDYFICFRKLMAELKFRPKEKFLWGWLHCSHKVATWLDESFYLVSGDIVESFVSRRDTLLCHVFESQAIGYWIKNISNLTTFADNKRLLHASQKGFSTEKDVVNRGEICHSVLGIHQSYPEKMRMLWRTYEKENKPIAYQVPSISYNCKYPLAMDHKFFRRSKFWFAKLKLCKDNPIWNRSGEYKGRNGPHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWK0</accession>
    <name>A0A6S7IWK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000976</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006620">
        <property type="protein sequence ID" value="CAB4009932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWK0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="10180" checksum="EFF59F1C91BB83AA" modified="2020-12-02" version="1">MGGLSSRRSHRTSTINATRATQNAAPAVDLPPLATPQTSTPPVPSSGNVLSRSFRLWCQPWLLKWPGKWLRFFLPKFPVQCQLQQYLLYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXG8</accession>
    <name>A0A6S7IXG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Polyphosphoinositide phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A071831</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006703">
        <property type="protein sequence ID" value="CAB4010181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXG8"/>
    <dbReference type="OrthoDB" id="6018167at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043813">
        <property type="term" value="F:phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046856">
        <property type="term" value="P:phosphatidylinositol dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043573">
        <property type="entry name" value="Fig4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002013">
        <property type="entry name" value="SAC_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45738">
        <property type="entry name" value="POLYPHOSPHOINOSITIDE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45738:SF5">
        <property type="entry name" value="POLYPHOSPHOINOSITIDE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02383">
        <property type="entry name" value="Syja_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50275">
        <property type="entry name" value="SAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="162"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="775"/>
            <end position="839"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="169"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="182"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="217"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="784"/>
            <end position="807"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="808"/>
            <end position="820"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="825"/>
            <end position="839"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="839"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4010181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="839" mass="95602" checksum="4106BCCB77B0DFDB" modified="2020-12-02" version="1" fragment="single">MRTDFQKVEYDSDQIKQLLAMINDGNTPKNPKAYDKDSTGLHRTVSAFGIVGFIRFLEGYYIILISKRKKVAQLGGHTIYKVMDTCMVPIPNETVRTKYHHDGESKYLKAFQNVDLSSNFYFSYTYDLTQSLQYNMSLLERSYSKCPSCECQCHLKTETLNENEKDNHTSPSSQPSEINTKFNKECKDRTNLDSGKVTLNTKEKDSDSSSTSQPSQINTKSSKACNTIKDSPKSTQLKADSTDVEDGRGKFQLKGKSLCKECARKRVQHHHTVLGRGKACMKFVWNKHMLKDLDTIVHSDWLLYITHGFIGQYYISVYGRPLYLTLIARRSNEYAGTRFLKRGSNDSGFVANDVETEQIVHDASTLSFKNGGYTSFVQLRGSVPLFWSQELQHGVVPKPQIQVDRSDPFASAASQHFNSVLQRFGSPIIVFNLVKRKERKRHEQILGEEFERIVDYLNQFLPPQHKIKYIWFDIARYSKNKDVKVVEKLQQYAEQFVESVGFFHSGQDLYANEIRPDERWLKVGGYRNEHMFGREQTGILRVNCVDCLDRTNIAQFVVGKHVLGLQLYALGVIDKPVVNFECDAVRLLEDLYEDHGDTLAAQYGGSHLVHRINTYLKSAPWTSHSRDIYQTVRRYYSGAFTDSEKQQAINLFLGKFIPGENCLPLWDHPTDYYMHHVSNQDGGNSGLPAGKSYTKWFDDEVVATLPLSCQEVSSRNSTSLAEERDKLDKEDSNDLFRDYYQPDELSELELLFSFNLPSSYRLFMPATEIEPSPFVVRATGGGTANQRRPSTKPSSLQRATSPTNEYLSSDSDSSSTSDSDILPSGKKDSYTNKGGVRFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J4Q9</accession>
    <name>A0A6S7J4Q9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012803">
        <property type="protein sequence ID" value="CAB4024020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J4Q9"/>
    <dbReference type="OrthoDB" id="5985905at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="36333" checksum="2F36CF646256C171" modified="2020-12-02" version="1">MSLQPDLCGILLRFRKKKIAVTSDIEKMFLQISLREQDRDSHRYLWRDLDLEASPKVYRMTRVTFGVIASPFLAICTTQEHVQRNKELHPEVCDEILKNTYVDDFAFCREEVNEARELQQSAKELMAQAAFNLTKWSSNSRELLEVIPEEDRAPNSLINLNQSFPENCSITKALGLKWDTNKDTLTYIIEIGQPQIETYTKRHVASCAAKVFDPIGLITPFTVRSKMLLQSLWTQGIGWDDEIPTETCRKWTQWLKEINDLENLAIPRCYVELPMNRYSRLELHAFGDASDLHMHLQSIYELCLLRDMFQPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5P2</accession>
    <name>A0A6S7J5P2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026633</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007586">
        <property type="protein sequence ID" value="CAB4012641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5P2"/>
    <dbReference type="OrthoDB" id="6082704at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="28131" checksum="E06DFE5FCEEA000B" modified="2020-12-02" version="1">MENISKMAEQRKSKESIKIAEQRKSKESIKILTKKNLNNSVEFGNTELAHPGPKGAVNNGTQPRSFAAVASGSNEDNEQVTIVSVIDCEQSEGQINTVLVNDDDSNKGESANDPGPPSNNTDCPKQSQVIRSSKTSENQNEASLVDSKEFIGVERRNTKRLYLGGVKDGVHASTIKEFMQGKGVQPTFVRMMKSRRSSTVPVRRNVRASDIKEILEPNFWPKNVYAREWLSKDKWEKRSVKSNRDPSREPPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J6B7</accession>
    <name>A0A6S7J6B7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A031125</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014891">
        <property type="protein sequence ID" value="CAB4027585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J6B7"/>
    <dbReference type="OrthoDB" id="116078at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4027585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="471" mass="53565" checksum="821C2919C81F152B" modified="2020-12-02" version="1">MAMVEPVVGQHLSHLVVLNTLVRPSSPFCVRVANLTNDDLWIQPRTRIGVLHAVSNIESGVEFKRVSVNEEMVTVQDSENTSIPDVVDNTECPCNGLSPEQQEKLDALLNKHASVFSKSDDDIGYTETVKEHIQKLLDSSVIRESHSPYASPIVLVRKKNGSLRLCVDYRKLNLRTQKDSFPLPRIDESLDALNGAQWFTTLDLTSSFNQVAVEEKDKPKTAFTTPFGLFEYNRMPFGLCGAPATFQRLMQSCLHDQIYQLLLVYLDDVIVFSKTFDEHLERLDKVLTRLAQQGLKIKREKCSFLRKEVSYLGYVVSSDGVSTDPDKISVVKNWPVADPLHELQNRCLHELKLKKHLLVPFPKRWEIVYQQAFDRLKHLLTTAPVLGYADLSQPFILETDASHQGLGAVLSQELQGKRRVIAYASRRLRPTERNMDNYSSMKLEMLALKWTILNVLATDFPQSSKKSWTHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JA31</accession>
    <name>A0A6S7JA31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamate synthase [NADPH]</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006961</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015911">
        <property type="protein sequence ID" value="CAB4029055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JA31"/>
    <dbReference type="OrthoDB" id="5957032at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051394">
        <property type="entry name" value="Glutamate_Synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43100">
        <property type="entry name" value="GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43100:SF1">
        <property type="entry name" value="GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="1">
        <location>
            <begin position="21"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="27472" checksum="AFB575D9CB425DB5" modified="2020-12-02" version="1">MDFLEKNQKKQLGYLDDDVTDARDKNVIVIGGGDTGVDCVATCVRQNARKITTFELLNEPPKNRTDVNPWPQWPRVFRIEYGHEEVAIKYGKDPRQYNTLSKEFLGDDQGNITGIRTVKVDWAKDVSGRWAMVEIPDSEYIYKADLVLIALGFTGPSKTLAKELALKMDMRSNFSTERKSFNTNLENVYAAGDCRFGQSLVVTAIAEGRQAARQIDLDLMGTTSLAGRGGVIMNNVNDSHANTRSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JDG5</accession>
    <name>A0A6S7JDG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028674</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008545">
        <property type="protein sequence ID" value="CAB4015032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JDG5"/>
    <dbReference type="OrthoDB" id="5978872at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="460" mass="51622" checksum="B26B9FC1A08C5892" modified="2020-12-02" version="1" fragment="single">MLKKYNFFNFVENCTKLLFDSFDSSVNQDDALSEVDKFAYLKGLLVGPAQTTIAGFTLTATNYKEALELLKTRYGKKTAIQRAHIQALMNIKPVCNERDVRRLRELYHACETNCRSLKTLGVDESSYATIVVPEILDKLPESLRLTITRGAREGKTRCVYCLQEHLSQDCKKIQNAGERKQILRKYGRCFICLKRGYISSNCLNTSKCRACSKRHHSSICESHANGSVTADVVHSTHSCVGSANRVALQTAQALVMGGKENVRVRVMFDSGSQRSFVTSKEKVEGKFREVFELSVAPVQGGESVNIEVYGVDSISQIKNEHVETRKKDYPHLQGLWFSDVCKDKNVLEIELLIGADYDYLWLFQEGRTVRGKSDEPVAVQTKLGWVLSGPLKSSSEDDDGPTSCAQVSVNLIGHVTSSKNRSLEACVEKLWDYETLGIKHEEEASELLNDSIHFNGQRYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEQ4</accession>
    <name>A0A6S7JEQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040976</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017080">
        <property type="protein sequence ID" value="CAB4030706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEQ4"/>
    <dbReference type="OrthoDB" id="2436455at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="88" mass="9877" checksum="4B7D32EB70ACB30A" modified="2020-12-02" version="1" fragment="single">MRKAKSKYFCDKIQASSQMGDSKSGWAWINSLLGRKHKNANINELKVNDDIISDDKSITETLNEYFINIGMKMAAESACQSTDALNDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHM9</accession>
    <name>A0A6S7JHM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A056069</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017962">
        <property type="protein sequence ID" value="CAB4031886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHM9"/>
    <dbReference type="OrthoDB" id="5982216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027370">
        <property type="entry name" value="Znf-RING_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13445">
        <property type="entry name" value="zf-RING_UBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4031886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16459" checksum="D12A13489AFC83D3" modified="2020-12-02" version="1" fragment="single">MACCPTEKEYGYEHSRFEKDVDENFHCSICYNVLKEPRMCRNNEHIFCLACISEHLKVNSQTCPECNEHLSVDTLRRPRVLNNYLSKLKINCDYASRGCPELSCVEDLETHVGNCGFAPVLCSNAECRMEINKRDKVYHETE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJ29</accession>
    <name>A0A6S7JJ29_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Pentraxin (PTX) domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A041007</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016693">
        <property type="protein sequence ID" value="CAB4030184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJ29"/>
    <dbReference type="OrthoDB" id="547680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051360">
        <property type="entry name" value="Neuronal_Pentraxin_Related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001759">
        <property type="entry name" value="PTX_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277:SF161">
        <property type="entry name" value="LAMININ G DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277">
        <property type="entry name" value="PENTRAXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13385">
        <property type="entry name" value="Laminin_G_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00354">
        <property type="entry name" value="Pentaxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00159">
        <property type="entry name" value="PTX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pentraxin (PTX)" evidence="7">
        <location>
            <begin position="113"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="118"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="556"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4030184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="556" mass="61370" checksum="433BDCA6D388F873" modified="2020-12-02" version="1" fragment="single">SDCVKKNLCNGAGRCLADSCEPAGFKCECFDKYCGKYCQCECYDYDINFEKATANNFIDLGTIDTNFNELTFSAWIKFDPGFIKYPLVSYVTENSIETFALGFRSDNTSGTTREDASGDASGDASGDTIGYTRLDISNVTSNGTSRETSGETDRRTIAEYFGNLFGQHVRTITIPINDGYWHHVGFAWSGVTGEWILLIDGVLWATRNVFTGKTIPSGGVLTIGKIIDNGVTYHLVGKISRVNLWSKAKTGGEIEEIAKSPGSRDGDLISWFTLKDLISDLKIIRPSKAAFSGNSTNYDITLPLAIVNYPGPSKTMNFLSSCLWFCGNTGSENTRIFSYDALNSFVFGISSGTSLTSRISGFSSIRTVASGFQRWHFLCIQWNGIEGTVTYFYDGYRAKIKVQNEMLKTQLPKGKNFSIGLSDEIGTLTQLNIWDYEIAASNVIAMSSGGFNVHGSVLSWSSLAKYAPHARINWNTEIYLPGFTILARRTKWCNDQFPGASCTGELLARLGGYPPRTNMKWRCYCPSSLLGAKFTYDFSTESPSYHYGHSSLIVLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLF1</accession>
    <name>A0A6S7JLF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015019</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007306">
        <property type="protein sequence ID" value="CAB4011898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLF1"/>
    <dbReference type="OrthoDB" id="5969818at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="590"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="590" mass="65786" checksum="8FECC555FCE8AC4A" modified="2020-12-02" version="1" fragment="single">MRALPTVMPEVYDAFLAGHFSVQMSKSNPFGQNEADKTIENTINRDCKTSGGYIGFSANFAATQRWVLNNSRRSSYRRLFREHVSLLSTENKPHKELSPSHIRSDMEAVANVVDVLENVFCNPWNRDVVHLISLSTGISATPEVRDDLLQANEKGKSASRKFVEQRCSSDESVPFFDPLTKLKLKSFKYLKAVTKVRSKDAVIPIKLDRDVFARMALLGQFRKIDMRLVFTYPLGPLPWALADPYGLPRKTNKAKLAQQLEKQVVIKDCYPLDATSIYDGMAVLQKFKPPPGATFAVLAESLFTMLTSNSSKRIDVVSDIYKDISIKNAERSKRATGPVGITYKNILPGYRVKNWSKILSVSANKTDSSEARVVPELRSNHEEADTRMVLHAKHAGGKCVIYSEDTDVMILLIGHAHNLGKCYLQKGNGSKRRIVGISEIADQLERQVADGITKQEACEALMGLHALTGCDTVSAFSSKGKLRSMQMLVKNHIYANTMKDIGKEWSVSDDTFSATEEFVCHLYGKKGKSVDSLRYELHYAKGGKVAPEALPPCQSSLRLHVSRANYQAAIWRRATEACPDIPSPHGHGWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JT35</accession>
    <name>A0A6S7JT35_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like RNase H domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079546</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019108">
        <property type="protein sequence ID" value="CAB4033284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JT35"/>
    <dbReference type="OrthoDB" id="8948150at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="10527" checksum="AAD3AE046999FB92" modified="2020-12-02" version="1">MNDANRTCTLSLDEISIKTHLHYDSEKDEVIGLDDDGDTKSDLMATPALVCGIHGLWYLWHVVFKKIGSSPLHTTWLTAAVTVRRSRKSSMLLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JU32</accession>
    <name>A0A6S7JU32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A054786</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010707">
        <property type="protein sequence ID" value="CAB4019952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JU32"/>
    <dbReference type="OrthoDB" id="5988361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="81"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="81"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4019952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1145" mass="129321" checksum="73BC82DBADD3F02F" modified="2020-12-02" version="1">MLRNGELGQICNDQNQRSAFHQDLKAIRMLLVVVGVFILCWGPYFITMLPLLYYENSNESDSRSLSDQLSDKRRSLITEKVKMAEGPKRLHDPPTGQTPGKKPEKRRSGVSGRFLRKSLFQSDTDLEQGVEQKNQKVQTTCTWKDEEVSALVEYIALYYSPDENSFNVWPAGKNDELWGKCADAVNCYNIGNKRSGDACRNMVRRYLKEKFPTIASAEEAYGISYFGEKVSNAGQSVPSTPHVVSGHTTSARSPLLGFSPLRDADFTKLPGCILDIVSSGFSNLTPRQREQLLIHLFQKWMVEDINPRLDATFVPPQLLPLVANAMSVLRAGNKDNLIYHAALCFGEQRHGDVGPRMPLDRMPFGLIAHNLKFFASNQVSNLQAPDDYKSWCQSMYALFGNKWASMHLGPMWSYELESEHVSVTNDSSLSLDIISQALQETFGDDSDVVSMENPLPVLKNVQDTSIADDVAKSGRAIKGDPLKAKINIAGPSSRTIRRMTENNDYSKGTEIQTSALKFLHNAYPNGRWWLKADGTDIQEGLRESMRNEWSGDVDLGDGKLGIKYSKYLEYLKLVSNIRLKDRASSDNIKVDLQQMCSKLSTESEFLTNGHADAKKDYKSVQDMANSTEKALFACAWNVEEFSKLLEKNAYLLQSLKNLISIIDSGNTHSVNIGTTLVNLRKELQDYVKGITSKTRVAASHILIFMVSDELRNFKPYAIPVRVLKYSSLTDKNARDLKEELKTAMEDIGMVTVGFVTDGEFNSLRTQGKDRPVSVIQLIMDAKNEARAIPAKEIEKFFKSVKKEGVVLPVKGHNAIPLGDVQWLAEYMNGEPKVSFLNAIRILRRKHFPFFYDPHPWVAGKTESKSDCLKSLMAMYLFKNKVSMYCAQGVNFQDYLYVPEVSERTGEPQQEREDHNHVLKRIAGSLRKGHIPNVDLQAFVKAMNNAETGLTYTALTGKRKQSVGDAEKLLSHAVAKWLKANGFLNEGRFVEIVSNWHKASDGRGLAEADRKKCNLAMLDYILEDWMPWYKEERDYSTLDVNRPIRGIRGFTREVVVALTTNIESQEFRRRYGLEKGLLPEHSRAGSTDDVEGIFAFLHALLGPIFDEKDFHDAFPKVISEYTKKCDPDLPFYYYTGSNDRYNDGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K048</accession>
    <name>A0A6S7K048_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cellobiohydrolase A (1,4-beta-cellobiosidase A)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A031867</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024472">
        <property type="protein sequence ID" value="CAB4038686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K048"/>
    <dbReference type="OrthoDB" id="410592at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007154">
        <property type="term" value="P:cell communication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030001">
        <property type="term" value="P:metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051171">
        <property type="entry name" value="CaCA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038081">
        <property type="entry name" value="CalX-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003644">
        <property type="entry name" value="Calx_beta"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11878:SF65">
        <property type="entry name" value="NA_CA-EXCHANGE PROTEIN, ISOFORM G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11878">
        <property type="entry name" value="SODIUM/CALCIUM EXCHANGER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03160">
        <property type="entry name" value="Calx-beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00237">
        <property type="entry name" value="Calx_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141072">
        <property type="entry name" value="CalX-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4038686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="13485" checksum="85D56F7B03C06796" modified="2020-12-02" version="1" fragment="single">AIIGFTSQTYDVPEDQKAKITIGFTRGEATSPVTVRLETSPASASDKDFVSRTVNVTFNPGETGPKEVEFEIIDDPLVENTESFSVSVVSTSVSGVISGEPATVNILDNDGNYFPIACLLCCQYEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K234</accession>
    <name>A0A6S7K234_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box WD repeat-containing 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027048</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023156">
        <property type="protein sequence ID" value="CAB4037488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K234"/>
    <dbReference type="OrthoDB" id="2305498at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12817" checksum="B6FA4039F6C7E1A3" modified="2020-12-02" version="1" fragment="single">MLKSHTRSVLCVHVDDDVIVSGSEDKTLRIFDRKAGKLWKTLQLPSPAFSLHYWNDGYSLLRVAGRESIYYIDTTANSYKLIKTDSHTGHSRRVNDFAQFKGALLTASADGTLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC66</accession>
    <name>A0A6S7KC66_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031256">
        <property type="protein sequence ID" value="CAB4042985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC66"/>
    <dbReference type="OrthoDB" id="5984894at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="1">
        <location>
            <begin position="2"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="53" mass="6259" checksum="7F73638E1867FB69" modified="2020-12-02" version="1" fragment="single">EDCPRGEWPLAVVEESYPDKNGHVRQVLIRAANQTQYRRDVRKLCLLEKFDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCK6</accession>
    <name>A0A6S7KCK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">G- coupled receptor GRL101</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044109</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026994">
        <property type="protein sequence ID" value="CAB4040584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCK6"/>
    <dbReference type="OrthoDB" id="5983179at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="337"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="348"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4040584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="42342" checksum="A724B664D64CEE63" modified="2020-12-02" version="1">MLESNYQWNWTDQCEEAFCKVKAMVVSDLVLTHYDPNLPLQLACDASPVGIGAVLSHVMTDGTERPIAFASRSLSKAERNYAQIDKEALATVWGVKKFHNCLFDAHSKWPEVEIMPSTTSTQTIDRLRTIFPRYGVPAQVVTDNGPQFTSAEFQLFLKTNGIKLITTAPFHPATNGQAKRFVQSFKHAMKCEKQSASQLKTNMAKFLLAYRNSPHSTGESPSVLFLGRPLWTRLDLVKPDLQRNSKVMNRQIDQAGRKGHSPTRQLSIGQTVMARNYSGKDKWLPGIVRAQTGPLSYEIKSDDTAEPHPELGETGQNIAPAEEIVAEPDIELATNPPVVQQEEAGRATTGSGQRYPTRSHQPPERLGLNCLIRKLFKKTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDV7</accession>
    <name>A0A6S7KDV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA annealing helicase and endonuclease ZRANB3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A045939</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027575">
        <property type="protein sequence ID" value="CAB4040984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDV7"/>
    <dbReference type="OrthoDB" id="605656at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043596">
        <property type="term" value="C:nuclear replication fork"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004520">
        <property type="term" value="F:DNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031297">
        <property type="term" value="P:replication fork processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18793">
        <property type="entry name" value="SF2_C_SNF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049730">
        <property type="entry name" value="SNF2/RAD54-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45766:SF3">
        <property type="entry name" value="DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45766">
        <property type="entry name" value="DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4040984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18351" checksum="0FCE5EC415DFFF54" modified="2020-12-02" version="1" fragment="single">MKAIEQEVVKRRVKYIKIAGDVRSVLRGSLVHQFQTDSSTRVAILSILAASMGITLTAADHIIFSELHWTPGVMQQAEDRVHRIGQENSVLVQYLVARGTIDEVLWRMLCTKIYVTSTALNGKLQGLDVEEGSESQSKLLEAFSAWVMEDEDDGVAEDDFLFTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDY9</accession>
    <name>A0A6S7KDY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086536</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029375">
        <property type="protein sequence ID" value="CAB4042048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDY9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="82" mass="8764" checksum="E347FA5F6B8D718C" modified="2020-12-02" version="1" fragment="single">FYGLKCEESSGAGQCGLTGIADPTVQSEKLGNYYNSGTSQANYLPNVELYTCLWFGSLGNADFVIQYAISAVEAGFTNNFVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJB9</accession>
    <name>A0A6S7KJB9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043697</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040403">
        <property type="protein sequence ID" value="CAB4045575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJB9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21111" checksum="2958A8E363DCE9D2" modified="2020-12-02" version="1" fragment="single">TRYKQRDHSKRPIDRQRPLKTTTTRLIPHRNVLLSDVPTFYRNFLTSDAHNGRDGLLLSLWRTRSSYVRESSRQNVQSLWQKEPFCQGVQRQRTGKVNELEETTPHTVTAVLQAQAYSSDEELFCIKQLVSAGNKARVAIPLNGVPTRLLVDSGASVNILPMNVYNQIKQPSSKPKPTSICIYSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJU5</accession>
    <name>A0A6S7KJU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038594</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014883">
        <property type="protein sequence ID" value="CAB4027572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJU5"/>
    <dbReference type="OrthoDB" id="8045002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="882" mass="100747" checksum="FE885AAAACCF16DF" modified="2020-12-02" version="1">MNSDHFEKHNSNKHKGLGTSKVVVDLAQTMLQFCNNIHGKKELLPVSVATVTDNTINRQSEESFSDTVLEHQEDVFQKEVQIEHVDEDEVLMHGELVLEFDHHETAVHNICNDERGDECNTTVSYDDVNQAQAVSTILSISESEEEEIDTDSETINTNYGRACDDPDIQVSDDPEIPWTVHAAEIKRLVDYSHQCDSIITKALSSEVIYPEELLTDVLEAISKVREHSTNMEKNCATTLHKIRESNLEIGMAQVDADFTSLQDPADRPRTLSDQQKQKIIENGPYQPKLKRYPESQEISTKKQCRFSSGWYKEYPHLEYSVKEDTASCFVCCLFPTGVGRERSSDAWVKGIKGWDKMKSIGKEKKGKLSQHFSSQAHKAALSDLAQFAHNIKHVDVMLNKQLRAAKIQEEANNQRNQEIIKILLDIAKTLGRQQLAFRGTNDDADGNFLQITNLVARHNSHLKNWLSNEKMKPYSMKYLSAISQNEFINIIAEDVKGRIVNEIESAGMYSVMADTSPDTANTDRLVVAVRYVNEENQPKERVLEMKETKDKSGEGQAKEVLQLLNSKIGSQDGLVYQSYDYTASMSGKFKGAQKCLQTLIGRSVPYIPCQGHRSNTFIEHCSKTTLFTQMYDLLEALYVFFSKRCKRDGVLRKELKEIENALKLRNLSKTRWVYRSESIEAMWRSFEAIKDVLLTLSTMDGVDSSAQTRAASLHGKVLKFDFMFALMFMRLVMKITKILTIQMQKEELNILDALMAIKETVASLETIRRNKSEMNNQVKASVEFSKSFDQDPEEDFRRKRVIRMSRRQDDNPDTAASIEFYAHYRKFMIEVLDSLITEYKENVQQCLEKIQPLADVLQPPITSMDFEQAEEISKLFPPSETV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KK20</accession>
    <name>A0A6S7KK20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Kelch 12 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A026874</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042594">
        <property type="protein sequence ID" value="CAB4045865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KK20"/>
    <dbReference type="OrthoDB" id="6482909at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412">
        <property type="entry name" value="KELCH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412:SF498">
        <property type="entry name" value="KELCH-LIKE PROTEIN 26 ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4045865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15569" checksum="4EB7E71E3A24D7A4" modified="2020-12-02" version="1" fragment="single">VDIKEVTSESMELLLDFCYTGEITVTENNVEDLLLAADLLGFSHAKESCSSFLQDQLDPGNCIGILQLGEKHTCAKLCGKAESYILRNFKDVAECNEILSLDVKQLKYLLESDNINIDNEFEVLQVIFNWVENDSKTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQ97</accession>
    <name>A0A6S7KQ97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Kelch-like ECH-associated 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051844</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037522">
        <property type="protein sequence ID" value="CAB4045074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQ97"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.80">
        <property type="entry name" value="Galactose oxidase/kelch, beta-propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037293">
        <property type="entry name" value="Gal_Oxidase_central_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="62" mass="6990" checksum="032D2DD532E3FAF2" modified="2020-12-02" version="1" fragment="single">SRCSRAVHVKKRSPLGPQVMYIVGGYLRQSLRVVECYYPRHNSWSLLKSLQQPRSGAGAAFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQQ6</accession>
    <name>A0A6S7KQQ6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016017</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033932">
        <property type="protein sequence ID" value="CAB4044081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQQ6"/>
    <dbReference type="OrthoDB" id="5971890at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF19">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="80"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21200" checksum="BF7434666BF5516E" modified="2020-12-02" version="1">MSSTPLFGVLGEFDPSTELFTAYSERLEQYFIANSIEQCPADAAQVVHAATVKKKIAVFISVIGKKSYATLRDLCSPDSPKDKSFSELCEMLRTHYKPKRLVVAETYRFHRCIQEENENVSDYSARLRHYASTCDFGQFLNRSLRDQFICGIRNSATRKKLLNEDRTFQDVLKVAIADEVARRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRB4</accession>
    <name>A0A6S7LRB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase PDZRN3 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A021428</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028865">
        <property type="protein sequence ID" value="CAB4041752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRB4"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632:SF3">
        <property type="entry name" value="KELCH-LIKE PROTEIN 32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04564">
        <property type="entry name" value="U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00504">
        <property type="entry name" value="Ubox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4041752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="517" mass="58773" checksum="7657227FA5B92370" modified="2020-12-02" version="1">MARRDSFGGYEEERFENKFENKVDIKLQCSICLKVLKDPVQCPNEHYFCRSCIQKCLHENSETCPVCQHHLTEETLTKPPRLLTELLQSLMIRCDHENRGCRELVKLEFLERHVNSCGYSPTRCTNADCAEVMNRHEKERHEREQCHFRKIVCDECGEQVIWKSSRVHSCFMRKEMDDLARRFNVFQKDMREVKEKVEQVELTQEEMAYLTKEATERYDLFTGRQKIFVCGGDDGKTVLNSVESYSWPENSWTLEPAMQEARSGPSAFVHGREIYVSGGVIGTKATDSVDSLNVDKENLEWLKSPVKMPLKCHGHTMVRHENSAILTGGRDGDNVSDGIYEISLDPAHETKLLTQMPEPRCYHSCQINDNQFVVVGGKPTKYARDATNTVYVYDLNNNKCKTLPPLPFAISQMASVSYKGNVILIGGVNEAQTLNSVVMYDVKTGKIKTLPCLNQKRAGSAAVITGNVIIVMGGYECETKTFLSSVECLDLSSNVWRELSPMTTKRRTATAVVKPLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTH9</accession>
    <name>A0A6S7LTH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transposon Ty3-I Gag-Pol</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A007461</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030536">
        <property type="protein sequence ID" value="CAB4042639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTH9"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001995">
        <property type="entry name" value="Peptidase_A2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50175">
        <property type="entry name" value="ASP_PROT_RETROV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="34"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="56"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4042639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="266" mass="30479" checksum="E09FA4E301012292" modified="2020-12-02" version="1">MWSGPGNHSYDKCPAVGKECRKCHKKNHFMRQCRNRDKELPKYPKKHRVDAVENNGKQERDGEPSESSDEHEFYVYSTETTADKSDPWILPLEVNNSIVTFKVDTGSDVNVMSYNEFKTLQNKPKLKQSKTKLKAYNRVDVQVQGQCILSLKFKEKSVKALFLISPDDVKPILGRELSEKLNLVKRTFSIEQSNSSNNLTGSRYNNAKLSEKYADCFEGLGCLPHTVKIELRDDATPVVEPCRKIPFAQYDKLKHELQRMEAMGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUL3</accession>
    <name>A0A6S7LUL3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">adenosine deaminase</fullName>
            <ecNumber evidence="3">3.5.4.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A055133</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.4" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020038394">
        <property type="protein sequence ID" value="CAB4045252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUL3"/>
    <dbReference type="OrthoDB" id="272271at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009897">
        <property type="term" value="C:external side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004000">
        <property type="term" value="F:adenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006154">
        <property type="term" value="P:adenosine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043103">
        <property type="term" value="P:hypoxanthine salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046103">
        <property type="term" value="P:inosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060169">
        <property type="term" value="P:negative regulation of adenosine receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001365">
        <property type="entry name" value="A_deaminase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006330">
        <property type="entry name" value="Ado/ade_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11409">
        <property type="entry name" value="ADENOSINE DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11409:SF43">
        <property type="entry name" value="ADENOSINE DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00962">
        <property type="entry name" value="A_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Adenosine deaminase" evidence="7">
        <location>
            <begin position="2"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4045252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="10692" checksum="18A928261BC3ED5E" modified="2020-12-02" version="1" fragment="single">MVDLCEEFRTRNVVGLDIAGDESMGEIPAIKEHIMAFQRAQELGIPRTVHAGEAGPAASVHEAIFLLHANRIGHGYHVLQDPELYKLVIEKQIHLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D927</accession>
    <name>A0A7D9D927_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065557</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000204">
        <property type="protein sequence ID" value="CAB3979502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D927"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="17992" checksum="AF85F1C25C6DE0DE" modified="2020-12-02" version="1">MASSCSISDCENCIHAKKLYTSALAILHNQDRQMVIITDDKIQQGNLTVKRGNTQNDVLIPIVPMVEEVVKERGKGKGKGKDKSMEIKKIEPATTSKENPIDIIEKQPLTSRKQPSKEKEPQSSPSQKNQAQSRKDRLKKQALVKLLRAYIMTNIIVLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DA22</accession>
    <name>A0A7D9DA22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063581</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I LYR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000269">
        <property type="protein sequence ID" value="CAB3980202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DA22"/>
    <dbReference type="OrthoDB" id="275715at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990221">
        <property type="term" value="C:L-cysteine desulfurase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20264">
        <property type="entry name" value="Complex1_LYR_LYRM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008011">
        <property type="entry name" value="Complex1_LYR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045297">
        <property type="entry name" value="Complex1_LYR_LYRM4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051522">
        <property type="entry name" value="ISC_assembly_LYR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13166:SF7">
        <property type="entry name" value="LYR MOTIF-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13166">
        <property type="entry name" value="PROTEIN C6ORF149"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05347">
        <property type="entry name" value="Complex1_LYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="11398" checksum="3EB300E7CDADDC46" modified="2020-12-02" version="1">MTPCIIICINLLNMAARSEVLRLYRSLLRESINFNNYNYRLYAIRKVRDCFREHKNETDPERIKSFITKGQQNLESLKRQTLLNNIYGTSKLVIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAZ7</accession>
    <name>A0A7D9DAZ7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">DNA-directed RNA polymerase III subunit RPC8</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">DNA-directed RNA polymerase III subunit H</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">DNA-directed RNA polymerase III subunit rpc8</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A055718</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III (Pol III) which synthesizes small non-coding RNAs including 5S rRNA, snRNAs, tRNAs and miRNAs from at least 500 distinct genomic loci. With CRCP/RPC9 forms a mobile stalk that protrudes from Pol III core and functions primarily in transcription initiation. Pol III plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts, such as Epstein-Barr virus-encoded RNAs (EBERs) induce type I interferon and NF-kappa-B through the RIG-I pathway.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Component of the RNA polymerase III complex consisting of 17 subunits: a ten-subunit horseshoe-shaped catalytic core composed of POLR3A/RPC1, POLR3B/RPC2, POLR1C/RPAC1, POLR1D/RPAC2, POLR3K/RPC10, POLR2E/RPABC1, POLR2F/RPABC2, POLR2H/RPABC3, POLR2K/RPABC4 and POLR2L/RPABC5; a mobile stalk composed of two subunits POLR3H/RPC8 and CRCP/RPC9, protruding from the core and functioning primarily in transcription initiation; and additional subunits homologous to general transcription factors of the RNA polymerase II machinery, POLR3C/RPC3-POLR3F/RPC6-POLR3G/RPC7 heterotrimer required for transcription initiation and POLR3D/RPC4-POLR3E/RPC5 heterodimer involved in both transcription initiation and termination. Interacts with CRCP/RPC9. POLR3H/RPC8 and CRCP/RPC9 probably form a Pol III subcomplex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the eukaryotic RPB7/RPC8 RNA polymerase subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000365">
        <property type="protein sequence ID" value="CAB3981232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAZ7"/>
    <dbReference type="OrthoDB" id="10256606at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005666">
        <property type="term" value="C:RNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006384">
        <property type="term" value="P:transcription initiation at RNA polymerase III promoter"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04330">
        <property type="entry name" value="RNAP_III_Rpc25_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.140:FF:000130">
        <property type="entry name" value="DNA-directed RNA polymerase III subunit RPC8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.120:FF:000002">
        <property type="entry name" value="DNA-directed RNA polymerase III subunit RPC8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.120">
        <property type="entry name" value="RNA polymerase Rpb7-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013238">
        <property type="entry name" value="RNA_pol_III_Rbc25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036898">
        <property type="entry name" value="RNA_pol_Rpb7-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004519">
        <property type="entry name" value="RNAP_E/RPC8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045113">
        <property type="entry name" value="Rpb7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005576">
        <property type="entry name" value="Rpb7-like_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00448">
        <property type="entry name" value="rpoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12709">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE II, III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12709:SF1">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08292">
        <property type="entry name" value="RNA_pol_Rbc25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03876">
        <property type="entry name" value="SHS2_Rpb7-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88798">
        <property type="entry name" value="N-terminal, heterodimerisation domain of RBP7 (RpoE)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="3 15" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="5" id="KW-0391">Immunity</keyword>
    <keyword evidence="4" id="KW-0399">Innate immunity</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="159"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00054245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00062626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00072526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00073027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00078855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3981232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="22972" checksum="1C8784158ABC0F15" modified="2020-12-02" version="1">MFVLAEMKDTIRLPPTKFGVNLQEAITNELNTKLANKVVYNVGLCIVLHDILEIGDSFILPSDGASCTPVKFRFVVFRPFIDEILLGRVKACSHEGVTVSMEFFDDILIPYPYLQQPSKFDEEEQLWVWEYETDEGTHDLFMDINEEIRFRVIDESFTDLTPTGPEKASQDQPGNQEEKSPYSVTATITEPGLGLLSWWANS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DG52</accession>
    <name>A0A7D9DG52_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Reelin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A083511</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the insect defense protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000646">
        <property type="protein sequence ID" value="CAB3983717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DG52"/>
    <dbReference type="OrthoDB" id="2419613at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08544">
        <property type="entry name" value="Reeler"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.4060">
        <property type="entry name" value="Reeler domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051237">
        <property type="entry name" value="Ferric-chelate_Red/DefProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002861">
        <property type="entry name" value="Reeler_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042307">
        <property type="entry name" value="Reeler_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45828:SF9">
        <property type="entry name" value="CELL WALL INTEGRITY AND STRESS RESPONSE COMPONENT 4-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45828">
        <property type="entry name" value="CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02014">
        <property type="entry name" value="Reeler"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0044">Antibiotic</keyword>
    <keyword evidence="4" id="KW-0929">Antimicrobial</keyword>
    <keyword evidence="7" id="KW-0391">Immunity</keyword>
    <keyword evidence="5" id="KW-0399">Innate immunity</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Reelin" evidence="9">
        <location>
            <begin position="31"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3983717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="13356" checksum="33130C7C68F6BB8B" modified="2020-12-02" version="1">MPMIGAVFAIITSILFHESLCHHSGAPTSQCESMAPGHTAAAQAGASPYEVKVKRPYYMPGENVTVSIESSGDNIKGYLIQARQVGGNLAIGMFAEDPVNGKHLNCGNSKVKFKLYSQSRTEKAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKW8</accession>
    <name>A0A7D9DKW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009816</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001292">
        <property type="protein sequence ID" value="CAB3988213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKW8"/>
    <dbReference type="OrthoDB" id="6379362at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="523"/>
            <end position="574"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="609" mass="68821" checksum="150271FE27289C02" modified="2020-12-02" version="1">MKPKQSNLTKHEKSEKHLLRVKASRSVRPIQVVRNPTIAEEVKTAEIELAVTMACHSSILTMDHLGEIIAPNATGSRLANIKIHRTKCTKILTNIVSPALKEELIADVSGKKFSLIVDETTDVSTAKQLCVIIRYYSNVEKKIVTAFVDLVTVVHACADDLFNAIRDCLRGINLELVDCIGYASDGASVMVGEHNSVWTKIAAVAPNCIKLTCICHSLALCVQHAFEKLPSSLGFLLAEIPKWFSKSTIRREAYKSLYEVMSPDDDQLPPFEKYSATRWLVRGKLIFRVLTNWNELQAYFTVAQPASKQNARYKARMLLDMLKDPILYLFFQFVSPLVSEFERVNAFFQATDADPEEMFTELNTHHLSLRGRVFNQEGEQLAIENVDFGGKFLFEATKFISSQQDKAVAQAKVLEVKTRCLDFLLEAITQVEKRLPATSNVFKGLSALHPRKVLNVATRVPVSQLPLPHLRFEKVNEIEEQYRKIVHRDWKEDSSFDGTIPDTTVAFWSRVADVQTSLGDKPFKELATYALNCLTTPVSNAVVERSFSLLAAIKTKQCNRMKLELMNAIIRIRSKLQFGENCCVDFKTTRRMLELFTAKQLYDSQGENS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DRJ6</accession>
    <name>A0A7D9DRJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018663</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002009">
        <property type="protein sequence ID" value="CAB3992248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DRJ6"/>
    <dbReference type="OrthoDB" id="5988733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="210"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="211"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="315" mass="35459" checksum="3855623E5A33105E" modified="2020-12-02" version="1">MPDQFSSPNNGSVTVYIYEPELNYLKWLVLQKRKIETGGDLFGLWQDEGTAVVQLILGPGKGCSRTTTSFHQDVAYLEEVGAYLTSSQGLCNIGEWHSHHTLGLAEPSYGDQQTVWNHISTVAGGRFLVFIANIRGTPAKVNIGCFLFNLSEQKITKGNIKCLPCANPVRLTVENAYLTSKAEAGQDWTTFTKDEQSVKIENSVVPNEASSELRNRRDESATNDESFCEESYNDKDTLLPKESSEEEELSMREKLVKRLRQMFTNAMAFLRRCCRCCCRCCCRCCCRCCCRCCFRCCNCCCKDEANGHVPDTSRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSH7</accession>
    <name>A0A7D9DSH7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035892</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002003">
        <property type="protein sequence ID" value="CAB3992224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSH7"/>
    <dbReference type="OrthoDB" id="7763192at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="573" mass="65280" checksum="9657B9C782A9A39F" modified="2020-12-02" version="1">MSNYSYALTLKKDIFVVGDLNCNLLKSGPESDALNELCSSLNLFQLIKEPTRVTLQSSSLIDVILTSNTSLVVESGVEETHISDHFLVYSILKLKLPKKLPDYMVIRSFKNYSSEAFKNDLEQLIWQENPIDQGVNQRLDIFNQKFLSVLDMHAPIKTVKIKRRLCPFVDQEIVQLMKKRNALHKLARQTLQALDWDRYRSCRNQIKRKLRESERKFVYKRINDKNSNNNSLWKTVREFGAKAAEESKALITSYGLTSTHPDIPHKFSAEIHKFHFHPVSCDVIRKIVCSFPSNKSPGPDKVSVKVIKDALPYILQPFTDIVNCSLRESLFPSAWKLSEVIPLLKEGDHEIAKNNRPISLLLAASKISERVVLEQFTAYVEQKKCLSVHQSGNRKLHSTETLNLFISDKILKSMDDKEVVAVILLDLSKAFDSIDHVLLLKKLQVLGVSDDALCWFKSYLTGRQQGSILGPMLFNIYINDLPMVPKNGNLKSYVDDSKLLLSFSVNEVDSAAAKLNEDLRRVVSWCSLNSLLINPNKTKLLVFATRYMLKHADTGRFPYFTIGEKTVSCDLSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DUI0</accession>
    <name>A0A7D9DUI0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Complex I-ESSS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">NADH-ubiquinone oxidoreductase ESSS subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A067334</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.</text>
    </comment>
    <comment type="subunit">
        <text evidence="16">Complex I is composed of 45 different subunits. Interacts with BCAP31.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Mitochondrion inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the complex I NDUFB11 subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002504">
        <property type="protein sequence ID" value="CAB3994635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DUI0"/>
    <dbReference type="OrthoDB" id="2147978at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019329">
        <property type="entry name" value="NADH_UbQ_OxRdtase_ESSS_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40637">
        <property type="entry name" value="ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40637:SF1">
        <property type="entry name" value="ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10183">
        <property type="entry name" value="ESSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0249">Electron transport</keyword>
    <keyword evidence="13" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="8" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="9" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00018632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00030753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00031387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00046528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB3994635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13928" checksum="6203A7BD7300FC14" modified="2020-12-02" version="1">MCAVHFPKSKMANLLFRQFRLARRLQPVFARNKRCMSIFTNEREPPNGFLFNEKPRLNGEKRQWEEWEAIWYRWWIVSILILGLGFYYRPDTSLGTWARQEALKQIEEKDAAESSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E354</accession>
    <name>A0A7D9E354_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DDE Tnp4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A020617</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003620">
        <property type="protein sequence ID" value="CAB3999595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E354"/>
    <dbReference type="OrthoDB" id="6156560at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE Tnp4" evidence="8">
        <location>
            <begin position="44"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3999595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19174" checksum="049ACB94B1D5F20F" modified="2020-12-02" version="1" fragment="single">EQIFRVVLCSLKKRFIFLPHDENVKNIIDDFYTASQFPNVLGVIDGTHILIVAPHEHPQVYVNRKKFHSIVLQGICTHKLQFLHAVAGWPGSVHDTRILCNSDIWNICPLWCGPNNHLLGDGAYPLRSWPLKPFKNNGHLTRIQRRFNYRLSSTRAAIERAFGLLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E514</accession>
    <name>A0A7D9E514_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Delta-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A022505</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Putative Notch ligand involved in the mediation of Notch signaling.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Membrane</location>
            <topology evidence="5">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003769">
        <property type="protein sequence ID" value="CAB4000166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E514"/>
    <dbReference type="OrthoDB" id="5990184at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005044">
        <property type="term" value="F:scavenger receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007154">
        <property type="term" value="P:cell communication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.140">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001774">
        <property type="entry name" value="DSL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042635">
        <property type="entry name" value="MEGF10/SREC1/2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24043:SF12">
        <property type="entry name" value="DELTA-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24043">
        <property type="entry name" value="SCAVENGER RECEPTOR CLASS F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01414">
        <property type="entry name" value="DSL"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00051">
        <property type="entry name" value="DSL"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51051">
        <property type="entry name" value="DSL"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 5" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="4 5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 5" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU280815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4000166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1004" mass="113131" checksum="BB8FD72B3101740E" modified="2020-12-02" version="1" fragment="single">KLCRTSQSGLHAMARQLTDLGNGSRNPLVYSFLSFQGNLGINILATNQSGTKIHSYRLHRSIYPTVYGKKKWTNSTLRNNGRSNSNVKLSYQVYCKEHYYSPSCSVRCLPGVNYKCDESTGNKLCLNGYIGQNCTCKPGHQYNCDSTGKRICHRPWYGVKCDVECQGKNDTLSGYNCNTTTGAKICLYGWYGPECNETTKTIDYTKGEPGGSVLVRLNYLNNPDNTNYAGRCCGKRKMLFWWTECLSCDYQLSIWVTCDDKTTDSDCLYGMGKTRIFYNKSVISFPQDLGNGSRNPLVYNFTSFQGNLGINILATNRNGSKIHSYRLHRPIYPTVYGKKKWTNSTLRAKGRSNSNITLNYQVYCKEHYYSPSCTVGCLPGVNYKCDESTGNKLCLNGYIGPNCTCKPGHQYNCDISTGKRLCHWPWYGVKCDVECQGRNDTLSGYNCNTTTGAKICLNGWYGPECNETTNTDLGNGSRNPLVYSFLSFQGNLGISILATNRIGSKIDSYRYHKSIYPTVYGKKKWTNSTLRANGRSNSNITLSYQVYCKEHYYSPSCTVQCLPGVNYKCDESTGNKLCLNGYIGPNCTCKPGHQFNCDSTGKRICRRPWYGVKCDVKCQGKNDRLSGYICNTTTGAKICLNGWYGPKCNETTKTVSSAIILANNSLEIISTTQGKFNTLNSLKNKNSIHHITSMSRKMSLPETLTKDAMARRNSTSMTVMNSTRQTESPKTILSSSYSVELKLFSSYIRFTEVTENKLSGASVDFTATSEISTSNGMLSTSALSKIRTYIPTSDAILSSSAHSKTGDLIYQHLMECSVLQLSPKQELIYQLLMQYSVPLLTSKQDLIYQHLMECSVLQLSPKQELIHQLLMQYSVPPLTPKQDLIYQLLQMQYSVPLLTPIQEHIYQLLMKYSVPLLTPKQELIYQLLMQYSVPLLTPKQELIYQHLMEGSVLQLSPKQELIHQLLMQYSVPLLTPKQELIYQHLMEGSVPLLTPKQELIYQHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EA05</accession>
    <name>A0A7D9EA05_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004818">
        <property type="protein sequence ID" value="CAB4004145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EA05"/>
    <dbReference type="OrthoDB" id="7428225at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF3">
        <property type="entry name" value="MYCBP-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="28057" checksum="D436CCBAF316952A" modified="2020-12-02" version="1">MDTLNTVVKECMHVATVLGQQYTIITVDQALYCKLVELKWAIPEYREKLVVQLGGLHISMCFLKTIGDHMKRSGLVDSWIESGLLGPNAAETVMNGKAYKRAMRAHKITLEALWRLLVPLLLKFCKTINVDLALQISRLLSSEQNVNDLITCLKWPQFQTVYDEFLTQKCQENVNFQFWWSYMEMIFILLDFTRAQRERDRELYLDSFRAMLPYFFMYDHLNYAKWGVDIYRRDGTIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEL8</accession>
    <name>A0A7D9EEL8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC110242729</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082033</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005189">
        <property type="protein sequence ID" value="CAB4005411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEL8"/>
    <dbReference type="OrthoDB" id="424503at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Calponin-homology (CH)" evidence="1">
        <location>
            <begin position="3"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="26942" checksum="4A304F60AA431FF5" modified="2020-12-02" version="1" fragment="single">TLDDLTDSRVLCALVNSFVPETFTTEVLLNDRWTVNLALQTANEFFKSPSSFDASDLAQGDIMSVCSYFAFFFMCGYKLRQYQAVLKRMDELLLLKLGIKDDVDQIGQKDKNRKLVLEEALADYELQIRDLESHYDLTECSTWMKNITAIQNKVRAIVSKRIKDKFDIIRVPRNMTINDLTVSLVINLSLTSGVGFYELKTKEAISKDRKIVLQISKSGEFVDDLPGPEEKCKLKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIV3</accession>
    <name>A0A7D9EIV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037621</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006452">
        <property type="protein sequence ID" value="CAB4009439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EIV3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="117"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="133"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="23295" checksum="CC54AD17849274C3" modified="2020-12-02" version="1">MSLALSDLNKKVKDTENENLSLVTALKILYEEQIRTPQDKDQIHTHANFGKQTNNNGKQTYSTVGKNKRSKMIPFSSKITKEVINLDSTTPEQSYNVVTRNRYEVLGNGEDQYNTAEQQSETTQTSKAMRPKTSREVSTNKDQTKASSETSLRTYNSGNQPGRTINVAVAGDSMLKYINPSKLSKILKQNVHVKTFTAGAEVADISTRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HE07</accession>
    <name>A0A7D9HE07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031343</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000343">
        <property type="protein sequence ID" value="CAB3981000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HE07"/>
    <dbReference type="OrthoDB" id="6123at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="34322" checksum="CDA257C35BD0CE63" modified="2020-12-02" version="1">MESENKNLRAAARTLQEDLDKSNREKREFSKVKKRRENVSITPDTTISYESKNQFEVLSVSDHEEEVNKSASDLDQSESRQHKDPVRDTTTISKDGKTSIHESGKFKDGKFKPNILLIGDSMIKDINLHKLSKSSVRKLTYPGKRAEEIANEFQSAHVHSPPTEVIIHAGTNNIITDSSKECFDNIQLLSSRIKSTFKEARIAISSLITREDIDVTLKTQKTNELLKDLCSKEGYTYIENGNIDATCLNGSKLQVHLNAKGSALLAVHFNKFIRGTSSRSSDGGFPKELRQLGELLSLIMPQTSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HG01</accession>
    <name>A0A7D9HG01_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000691">
        <property type="protein sequence ID" value="CAB3984060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HG01"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1024" mass="116368" checksum="9B4E6CA09BAA8164" modified="2020-12-02" version="1">MAESASYYKTALAHELKNSVKGEAKHRIKSVFVTKPKAYDIMWEKLECHYGDPTASVQAALEDLQRLKPVKEEDYKALVELVDDVESAYSQLEELNQLNTLTMRDVDNLTDLLPTHLKVDWRRKDRDLSSAEKLQPFTPLMNFLDRERSVVARLAENQHSKKRGNDNVRGYSKTYHVERGAKHGQRTYYKCAFPTHRKDTINHTTEQCKDFQKLSISGKNGRYELLKQINACFKCFGNHRKLNCPKKLPCSSCGSDQHHSLLCIPPKLPKDSGEKSKTGDDGNKEVTSYTVGSDSMALYPIHQATISDSGRKVSVFCDGGFNASFITHRAAERIKAKKVKKLSLDVTTMGNVEKTYNTWQYEFPINTSAGKKVTITAFGMERITGQVSKLDPKVLVKLFLEHDPETLQRKSTHVDVLLGCDNFGLHPKQEEARCGDNLTIMNGALGICLQGAHPDLIEETRYDINLAKRTHDVNVKVETYKTRLDSHPEFNPNHTRECSVNVSSSYSHRKNESQIDNFIQGEELATQISPQCGGCRCHKCPTVGHTYSFKEEQELKLIQENLECDEVNQCWITSYPWLVDPQSLPNNYHTALATLERTERTLKKDDQWAKTYKSQMDDMVDRPAISTEAVYKTAELYQEDSPQAANLLKHSSYVDDLIDSRLSKPDALTIAKEAEDILAKGGFVVKCWQFSGETQPRVKEELLKLDLPEKSVESSDQGLIMLKGTDENLRVLGLGWNPKKDTITYEVTLNFSSKRHGVRTGPNLLENDLPSALPNVLTRRIVLEQRLCLERCLRPVNSNGRPWLIILSDGSDLAYGFAAYIRWKLDDGSYWCRLIMTKCRIAPINKLSTPQMELNAAVLSKRGRKVIEKEMRFDFERVLQIVDSETVLSMIHKTSTRFKVYEGVRIGEIQAATEGDLTCWAWMSGQHNTTDWLTRGRAPEELNNDSHWWNGPPILYRPIEEWGLKFNPKKEPLPGEKKAHVVAAASVEALLIDYKRFSNINKAIWIVARFESSPNHLKGNYGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HGW4</accession>
    <name>A0A7D9HGW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000701">
        <property type="protein sequence ID" value="CAB3984125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HGW4"/>
    <dbReference type="OrthoDB" id="7699712at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="21673" checksum="E2472286DA4B1237" modified="2020-12-02" version="1">MASWREGTKAEYDPYIRKWLDFCMKVKCDLVTPPVPTAIDFLASSFDGGLSYASVNTACSALSYVLLIENSKIPFGQLPPVKHFVKGIFELKPSLPRYRTVWNVSTVFNYPRCQPNIADLSLKDLSLRLTLLLLLLSGQHCQTVYYFTMDNMELSEDKCVFKVTDKVKPGKDIIFHPSSMSIIPMKEGYVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUA1</accession>
    <name>A0A7D9HUA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001694">
        <property type="protein sequence ID" value="CAB3990623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUA1"/>
    <dbReference type="OrthoDB" id="5967206at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="305" mass="34699" checksum="6F0157D7B4E0CDE4" modified="2020-12-02" version="1">MGFFITNNNWITVAHIPGKQNVIADFESRRGTNDTKWDLDQAVYDQAIQLLDVTPSIDLFASRLNYKCKPYVAFRPDPEAQAINAFHISWVNMSHNNTDVTIPSSEDTSSTKEVAITDVPLIGGLFESQGISKEAASIIVQAWRPGTQKQYKYYLQKWEQHCCERSINPISPNVGTAIDFLHEFYKEGLSYSTLNTVRSALSSVVQPIDNFTFGNHPLVTRYIQGVFVNRPALPRYKQIWDVSVVIKYLKSLGENTQLSLQDLTMKTTMLLALVTGQRCQTIQVLNIEQMVNSDDMWSFHINNYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXC9</accession>
    <name>A0A7D9HXC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Leucine-rich repeat-containing G- coupled receptor 5 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A041828</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002096">
        <property type="protein sequence ID" value="CAB3992664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6010448at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.80">
        <property type="entry name" value="E3 ubiquitin-protein ligase SopA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001646">
        <property type="entry name" value="5peptide_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050836">
        <property type="entry name" value="SDS22/Internalin_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000906">
        <property type="entry name" value="ZU5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46652">
        <property type="entry name" value="LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46652:SF3">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13516">
        <property type="entry name" value="LRR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00805">
        <property type="entry name" value="Pentapeptide"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00791">
        <property type="entry name" value="ZU5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00368">
        <property type="entry name" value="LRR_RI"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141571">
        <property type="entry name" value="Pentapeptide repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51145">
        <property type="entry name" value="ZU5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="27"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3992664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1759" mass="197842" checksum="8A41E1947FF68E70" modified="2020-12-02" version="1">MAEPFSHIESGTIDASTKLDKEKNVKDFIRSPSSQIDPRQTKGISLIKNPKQEPKTDYSYNPSKVDLWNKPHVSLSETSVLIKSKRSGKKLDLSGCGLTKLPGSLDDYASLEELNLSNNPLNNLDISFWEYFSRYRLKKLDLSGCGFTKIPEGLHYHNRLEELNLSNNPLSNLDISFLEYFFWYRLKKLDLSGCDLTKIPCFRYHHRLEELNLSNNPLSNLGLSSLEYLPLYELKKLDLSGCGLTKLPKGLDNCESLEELNLSNNPLSNLDISSLEYLLPYELKKLDLSGCDLTKLPDFKECIKLQELNFSNNSFDRQDLLEQLNSGKVFSSSIFHHSGKEFVELTASGLGLSKRTCRIIFEDAVYIQSGGDVTSTEEIYKGQMELEELNRFSGLSLPNEEIWLDEFCQIRKYKNLTIESCYAMLQSLHIVCNLVSIAAFDCWEHESTLSLSRCCDEIRYKCAIIKRCYSYSQHVRKCVYYLRCTVSWLESWSLQADDDIKLKQSITTSEIAFKEASKAFSNESSIAVKVLAAELTIISAILSNLTKPEAAVLRCLQSLQVLHDLHTIRDMFSFLDRKETKTTSFEQVEVSVEIAEFVIKINKILFEFVGMFFKPPPTVKEWPATIQVDEKIYNPLIDRRMIDSDVAVFRSLNLDIGEDDNKGKNPITDATEYSVSIIESNGETADNSITVDQTGGCFSLPEVSAFLLFPPNAVDETVTLKCSRVKHKECEVKPRDGEVFVSRILKVEPEGVTFKKPVTVLLSHSLDEDQVFLYFYELIVENLSPNGCQELKTERISSIEDIPKEISNKEILENCLPFAKATIRETCTLVAATRATFNQILIPTNRRYAFSKQYGDNAELKITFPAGVTEKILILNVQLFPADAVLNKDIRLNKSLVYAPIIRVSGQTTPFLKAVDVELTYSHSDVVNIEEIFLPVEKSIHFTTEYGLLMHNHNETGLKDNWQALNESHDVFIERLRKDQLKFSFSVTHFSDVQPVVKTSTAVSFVPQMSASMVNMNNPACHHAIVLAVHKCGSSPKTLHAVLAPKHEENRLSTKWNVKGLRFMRRLKCDEPVYFCVPMSKSDHLLLEDYTLWFDPEDESELANNTDDVDLAGKDMRFLKDRECNNGENHTTQGDCRAKVPIHISETRSVHVDPRTTNFGSPLPTANTPSAEIREPVVDVDSPQERDVSSGTEDAQMNNNHISQIMMRRCALFETTVETAAQKKMEIIKELAEDPKGGKATKIVEVAAPTTTVIASLACGITAAMSIPTGGAASFAAAFVAGGTLLVKIVDKRYQQANAKVVEEVLQTATEKAQISSYLNCVVKDVAKELSRIFESQLFELQSDKQVEILAECAVDLMFNLETDDTFDRNTLLKKVLQDGKIKKKKILTRTKDIEWSAPNVFRKPGLRRMIFGKDGAEFKHFIKPNEDGKKCKYGYRGQFLEVKKCVSQNGEGETAAADETPTNEDTSEKLCKDCCSNYENCTSGQYFDESEIDSHYNKPQNKLYSYNPLHILIQCPKVLESFNQLQKEKPSLANFLKSKLRLPEDHLVLPVYRPHSLRKVADLQKSDLTGSDFSHCDFTNSSLKESHFIKCVMLFIKLGGAKMSGSKFCDTLISHSNLEKLEADHCEWTKTSLLFSNVKGAHLNSVESSIGGNCLDGTNICEAITGNNRELNCNEELAQAKISASQFCCDTSVRDNNSVEVKADHCEGTKTSLLHSNISDVQCLDSAEPSTSGNFSNEIKISNAIPGNMGKLNYSKYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3X5</accession>
    <name>A0A7D9I3X5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BTB POZ domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A020460</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003946">
        <property type="protein sequence ID" value="CAB4000860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3X5"/>
    <dbReference type="OrthoDB" id="7492888at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043814794" evidence="3">
        <location>
            <begin position="31"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="467"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="523"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="523"/>
            <end position="532"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4000860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="549" mass="64616" checksum="FECF535FF73F3EDB" modified="2020-12-02" version="1">MFNMSFINGQTVVSLLAVTVLQWQAACVIAKDMKGSNSEWRLTKLTLLERNSFMFNNSLMSDVKFVPRGCGTDEPIYAHKYILATSSPVFYELFYGESAKRTRLQLDNSFIYEDEGYIVFEEDHFVEPVVSAFLRFLYKEECPENIEYIVRGTRDMAKQYRVPSLETACIKDLELKDTVVSDGEWQLTKTTLLSRSSYMFNNPLMSDIIFWSEGRGVYAHRYILATSSPVFYTMFYGESDIHNDYIYDDFDEEIIAAFLSFLYKEVCPKYIETVLKVLALVKKYRVQSFETTCKSSLEFNTPWPAFKVIEKFLEVDAEEMAEPWWTRIESQLDEIIVSEYFLKISQRTLIAFLERDTLCYPEIDLFHAVVRWSEYQCRLQRMWVTVENQRKVLGDSIFRIRFLSMTEGDFKRHVVPSGVLTDNEVSAIIETMRSGVGNYNYNWALPARSKRAWFCQFYSVEQLQNRVMAIVLGALLLVACVVFMHVYPYLLQIYEEIQETLQRLHCSDYKNFKQEQQAELEEEQKQLNEEQQLRQYRRRRRTIPATTTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6K1</accession>
    <name>A0A7D9I6K1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A031393</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts as a defensive agent. Recognizes blood group fucosylated oligosaccharides including A, B, H and Lewis B-type antigens. Does not recognize Lewis A antigen and has low affinity for monovalent haptens.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the fucolectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004468">
        <property type="protein sequence ID" value="CAB4002851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6K1"/>
    <dbReference type="OrthoDB" id="547680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042806">
        <property type="term" value="F:fucose binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010185">
        <property type="term" value="P:regulation of cellular defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001868">
        <property type="term" value="P:regulation of complement activation, lectin pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051941">
        <property type="entry name" value="BG_Antigen-Binding_Lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006585">
        <property type="entry name" value="FTP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713:SF6">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713">
        <property type="entry name" value="FTP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22633">
        <property type="entry name" value="F5_F8_type_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00607">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4002851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17437" checksum="B753E7414D70C1D6" modified="2020-12-02" version="1">MFQDTDYNFALLKPTAQSSTLRHSDVGYFLSKYAVDGIKADSCKTTGIASCAHLSSVENQWWRVDFQILIPVARVVFTNRKDYPGHNGLANFEIKIGNSLENEGRNNPKCGGQHSVPHAETKEISCLPPLIGRYLVVQSFHSQLLLIIEIEVFAAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAH8</accession>
    <name>A0A7D9IAH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon RE1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001984</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004017">
        <property type="protein sequence ID" value="CAB4001162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAH8"/>
    <dbReference type="OrthoDB" id="8026949at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="32524" checksum="480D2F6B2DBB9C27" modified="2020-12-02" version="1">MQTKGLYKALLGKEVVPEEIAPLAEDASDEQKAEWEAKVQQRNKQIEEIEERNNTVWCHIALALDNNSLLYIRHDCLSSDCVGDRAKAWRLLQQRYSNVEKPTVESFNPAANFTELRTRLQNYDDSRLQRNQAKEDSATAMYSGNTSGRNKGPSNPKGDCFVCENHGHFAKQCSKRSSAYCSKCKKKGHLPKTCRSSSKPDKSTKEPNSFASYSQCMNSGTETSSGRPTGKPNHLIIDTGCTDHIISQNELFENLQPCSIKNVKDPKGNFTPVEGIGDVPVKLHLKNGKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IC20</accession>
    <name>A0A7D9IC20_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glutamate-rich WD repeat-containing protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A051149</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004152">
        <property type="protein sequence ID" value="CAB4001671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IC20"/>
    <dbReference type="OrthoDB" id="2161379at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051972">
        <property type="entry name" value="Glutamate-rich_WD_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022052">
        <property type="entry name" value="Histone-bd_RBBP4-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45903">
        <property type="entry name" value="GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45903:SF1">
        <property type="entry name" value="GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12265">
        <property type="entry name" value="CAF1C_H4-bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="Histone-binding protein RBBP4-like N-terminal" evidence="7">
        <location>
            <begin position="98"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="31"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="46"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="60"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00040876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4001671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="451" mass="50284" checksum="B19BEC84CC36C0E5" modified="2020-12-02" version="1">MADQDKMDVGDEGKNEESNEMDDDNAAETLGSSSTAVSSSGNATGKSKKKKKKKKKKKSQKENGETSKENNEEMNLGGEDETSEPQVYLPGGPMEEGEELTFDSSAYKIYHQVQCGAPCLSFDIISDNLGDDRAEFPMTMYLATGTQSASGKQNFLIVMKMSELQEMEEEHSDDEGVIDDEPELTMEQIKHNGAVNRIRYAHIPGRQVVSTWSETGKVHIWDISQQFIQVNDENSATKTTSENKPLYTFTGHQTEGFAMDWSRTVPGRLLTGDCNKNIHLWNPTEEGSWHVDQRPYSSHTQSVEDLQWSPNEDTVFASCSVDQSVKVWDIRAAPSKACMLTAHAHDADVNVISWSRKEPLLVSGGDDGVLKVWDLRQFKTGEAVAVFKHHTEAITSVEWLPTDNSVFAASGSDNQITLWDLAVEKDDQQGQQEKPVDVPPQLLFIHMVSKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ITZ3</accession>
    <name>A0A7D9ITZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ephrin type-B receptor 6 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A022313</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010123">
        <property type="protein sequence ID" value="CAB4018688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ITZ3"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.50.10:FF:000001">
        <property type="entry name" value="Ephrin type-A receptor 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.10">
        <property type="entry name" value="Tumor Necrosis Factor Receptor, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001090">
        <property type="entry name" value="Ephrin_rcpt_lig-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050449">
        <property type="entry name" value="Ephrin_rcpt_TKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011641">
        <property type="entry name" value="Tyr-kin_ephrin_A/B_rcpt-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46877">
        <property type="entry name" value="EPH RECEPTOR A5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46877:SF14">
        <property type="entry name" value="RECEPTOR PROTEIN-TYROSINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07699">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01411">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51550">
        <property type="entry name" value="EPH_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4018688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="389" mass="43296" checksum="45BBD1D94E5A5BF2" modified="2020-12-02" version="1" fragment="single">WSPKAANDGCSICNSQDTAESWLLTKFQQVKEFIKSVHVNVKVYRPECGLCKNQDVKVYILYKALPIGQEGLKEAVGILKSLTLVATLKAQKDLTDKIHQFHFEPMASQFSIAFLSAGSCTLIKDITLSYFVCDKNTGAGVNLPRTAAPDNGSQRVNLSCSENTLNPGNEEVYGLCSSKRIWKIISPCICKKGYTLNTIEEVCIECPSNTYKDTFGNGKCTICPRNSGRNLKGQIQCLCQDGFYRFQGDNYTHSCYEVPSPVRDVKFIDKTETSITLLWKPPLPTKQGLLYDIKCNKCPPGSDSGSCVEPCGHQVTFKPSQNNLTYTSVNIQGLDQDMEYQFVIYSKNMNSARINRTNWKSAVKKIKTEAEVAKQANSEPVNAYVAEMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWR0</accession>
    <name>A0A7D9IWR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A041049</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010160">
        <property type="protein sequence ID" value="CAB4018770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWR0"/>
    <dbReference type="OrthoDB" id="10263345at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990745">
        <property type="term" value="C:EARP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000149">
        <property type="term" value="F:SNARE binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032456">
        <property type="term" value="P:endocytic recycling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042147">
        <property type="term" value="P:retrograde transport, endosome to Golgi"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040047">
        <property type="entry name" value="VPS50"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019515">
        <property type="entry name" value="VPS54_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13258">
        <property type="entry name" value="SYNDETIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13258:SF0">
        <property type="entry name" value="SYNDETIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10475">
        <property type="entry name" value="Vps54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0653">Protein transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4018770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13679" checksum="93D5634120C0B61C" modified="2020-12-02" version="1" fragment="single">MAIRSRFRSLLGLEHTRKELDSGSLDENSIGTAVFKDGEREFENDPLSNDEVISTIEEIYFHEVDSFDPSDHELKKLPEVLNKEELDEYRNVLRRQAQAVSKKLYMKVLDNQKAYMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IX54</accession>
    <name>A0A7D9IX54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008704">
        <property type="protein sequence ID" value="CAB4015407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IX54"/>
    <dbReference type="OrthoDB" id="8962491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="51" mass="5833" checksum="597E88911EC4AA69" modified="2020-12-02" version="1" fragment="single">MSPDVQNDLIECIDAVIEDQIDKEIRDCQFFSIQCDETLDVSTKEQLSVIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JF33</accession>
    <name>A0A7D9JF33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A039629</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015383">
        <property type="protein sequence ID" value="CAB4028299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JF33"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001965">
        <property type="term" value="F:G-protein alpha-subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005092">
        <property type="term" value="F:GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:RNA nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000132">
        <property type="term" value="P:establishment of mitotic spindle orientation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.180">
        <property type="entry name" value="KEN domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052386">
        <property type="entry name" value="GPSM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010513">
        <property type="entry name" value="KEN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038357">
        <property type="entry name" value="KEN_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954:SF1">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06479">
        <property type="entry name" value="Ribonuc_2-5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51392">
        <property type="entry name" value="KEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="16"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4028299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1249" mass="145018" checksum="935FA457FC780EB4" modified="2020-12-02" version="1">MEKITEKQQIQEYLNSGHSYIKRREFQLAIANFQIALEFAEEMKETKEITEANLQLGNAFKYKYQIEVAIKHYEKALEVAEERNDQGQITKAHLGLGDAYRLNHLTQTAIQHYENALEITRKQRYKQKKTNAYLGLGEAHILNNQIQKAIEYFNKALEIANEQAGYKIKETKAYLGLGHAYRLNNQIQTAIQRYEKALAIAEERGYKLQVTKAYLGLGDAYGLNNQIQKVIPLYEKALEIAKERGYEQEETNACIGLGDAYRTNNDSQTAIQHYTKALKVAIERGYKREETKAYIGLGDAYILNNQIPTAIQHYDKALKIAKEPRGYKLEETKAYLGLGHAYRLNNQIQNTIEHYEKAMKIAKKREHKLEETNACLGLGDAYKLNNQIQKTIQHYEKALEIAKERRYKRQETKAYLRLGDAHILNNQIPTTIRRYEKALEIAKERRYKQEESCAYLGLGNAYRLNDQIQKAMEFYDKALKIAKAQGYKLDETRAYLGFGGAYRLNNQNQKAMEYYKKALEIAKERGYKQEETCAYLEFGDAYRLNNQIQTAIKYFENYALKIARKRRYKREEAKAYLGLGDAYRLNNQIQTAIQHYEKALKIAEKRGYKQEETNAYLGLGDAHKLNKQLIPTAIQHYKKALEIAKRRGYRQEETNAYLGLGDSYRLKKHIQTAIEHYEKALKIVKKREYKRKETNANLGLGDAYRLKNDFQVAIQHYNTALEIAREHGYKQEETEAHIRLGHAYRQNNGIQTAIRHYGEAFETAKEQGHKRLENVAKNAIENLSKIIEGRNEKAKSSKKAQKFAKNTNTESLGSWKWEKRSIVHREKFIKLLQYGKDYPDEIKDVNGVRVCCSEEFLIGKGSDGTRVYVGLGKDGYEKAVKRLPRDACADEAKQEKKVLNELNATTSNYVVNYWFLDEQCDKDYFFLILDLCEETLANFVAGNSLDNLETIAPDIIRQVLKGLADLHRYPMPVLHRDLKPSNILRDVDGNWLLADFGISRILTADVTTHPSEQRGTDDWRAVESSYHSNCMTGNSEVRYKKESDIQVAGMVVFYIVTKGQHPFGEERFRLDNLLKGKPIGLDTLKNPVLKDLLSWMLSHDPKDRPSAEDALKHPYLESAKQQFEMLCKMGNQPEIKTRDVRSDVVRMLNSDPKDWRSLMNADVLQYLSTDPLKGKTFHYKPSWTDCLRLIRNVNEHWHDRPRPRPELFYLVDDPQECFLNLFPNLSVEVHRIVRSCDWKERPDLKEYFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JLB7</accession>
    <name>A0A7D9JLB7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exonuclease 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A008315</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018207">
        <property type="protein sequence ID" value="CAB4032194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JLB7"/>
    <dbReference type="OrthoDB" id="26491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017108">
        <property type="term" value="F:5'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006084">
        <property type="entry name" value="XPG/Rad2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081:SF9">
        <property type="entry name" value="FLAP ENDONUCLEASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081">
        <property type="entry name" value="FLAP ENDONUCLEASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="188" mass="21427" checksum="0B2259C224987469" modified="2020-12-02" version="1">MGINCLFPYLKTYSKEVNIAAVDASCWIHKGSAILVSQTGKRERQRQEQLMKATVDEQTNEEDRNKMLSWSVEMNYDVVECVKIEWGWRGFYDILDGLKVTMAQFVDGCVAAGCDYLKNICGVGINQAFSFVKAGTLFDELRKKGASNYYESLFNKAVSVFMHQTVFNPTKLHVQPLRAWSEDPDKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPI8</accession>
    <name>A0A7D9JPI8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A064565</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018921">
        <property type="protein sequence ID" value="CAB4033059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPI8"/>
    <dbReference type="OrthoDB" id="10009301at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251:SF52">
        <property type="entry name" value="CUB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251">
        <property type="entry name" value="OVOCHYMASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="disulfide bond" evidence="3">
        <location>
            <begin position="34"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4033059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16252" checksum="777BD3715974ADFD" modified="2020-12-02" version="1" fragment="single">MELGSEPKEPLLLCESLNHKIESLNHKSQAINICPTREITASSGQIKSPNYPSHYSSSTSCTLTIRQPLDTNITFTFTKLDMQRDEDEHKKCRDYLIISGVLSQTFCGTTTPAPFVPGLNVVTLKMVTDDSVQQSGFDLKFTTVHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPT7</accession>
    <name>A0A7D9JPT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019491">
        <property type="protein sequence ID" value="CAB4033719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPT7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16992" checksum="1E5829E23197D8DA" modified="2020-12-02" version="1">MLGLTVFEWRRLQREITTWKSEEESAKIGNAKTSVAAFKTSSAFSASLSNFFRTRNGQGNIVVSVESLKRKYKALWFENPVNPTQVFSNSFILQMAEQRMQFEKTLRSSELWCRKQKSTRISFLLALTKTPVISTWNQYYKLQSIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JS50</accession>
    <name>A0A7D9JS50_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020254">
        <property type="protein sequence ID" value="CAB4034603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JS50"/>
    <dbReference type="OrthoDB" id="5979365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="34659" checksum="53F74F7543624AC0" modified="2020-12-02" version="1" fragment="single">MVDLPPLVVNPLSVATNARGKKRLVLDLRHVNPHLHKLKFKCEDVDTAVLLLNPGDFLFTFDIKSAYHHVEVFKDHQTYLGFQWVYNGKSQYFIFRVLPFGLSTAPLVFTKILKPVLRHWRSSGKRVCMFLDDGLGGGLSLQSATIVSQAIKRDLIQLGFLLSESKCFWEPMPIQTWLGHIFNMSLNQLFVTETRLQKLEQSLDNILGCPKKVTARQLAAVAGQIVSMSRAIGPKVYLYTRHMYFAIETREHWGSILSFNSKLTTELQYWVSNLRTLNGRDMFREPQLFDTIVYSDASDQGYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JXE5</accession>
    <name>A0A7D9JXE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphoribosylformylglycinamidine synthase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A031945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023314">
        <property type="protein sequence ID" value="CAB4037645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JXE5"/>
    <dbReference type="OrthoDB" id="6666987at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.750:FF:000001">
        <property type="entry name" value="Putative phosphoribosylformylglycinamidine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.750">
        <property type="entry name" value="Phosphoribosylformylglycinamidine synthase, linker domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040707">
        <property type="entry name" value="FGAR-AT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041609">
        <property type="entry name" value="PurL_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036604">
        <property type="entry name" value="PurS-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10099">
        <property type="entry name" value="PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10099:SF1">
        <property type="entry name" value="PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18072">
        <property type="entry name" value="FGAR-AT_linker"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18076">
        <property type="entry name" value="FGAR-AT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109736">
        <property type="entry name" value="FGAM synthase PurL, linker domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82697">
        <property type="entry name" value="PurS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phosphoribosylformylglycinamidine synthase N-terminal" evidence="2">
        <location>
            <begin position="80"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="Phosphoribosylformylglycinamidine synthase linker" evidence="1">
        <location>
            <begin position="193"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4037645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="32507" checksum="F1B1F98B90EA1730" modified="2020-12-02" version="1" fragment="single">MIKYYRFPGLSACSHQESLSKLQKVSARVSWLATETCFYIELNQGYQLLIQDEKKLLWILTLPFDEKNISKNSFLDDKLAQEPGRQYVALEIGPRLNFSTAWSTNAVSICHSVGLVQVKRIEESLRYLVGIDDGDDTTAPIDYNAELSESLASVLYDKMTQCTYKQPLEGFDVDIKPDQWFEVDVLSKGRSALEKVNRDLGLAFDDWDLDYYTKLFSDYLNRNPTSVECFDLAQSNSEHSRHWFFRGKMVIDGEEIQESLMDMVKKTNKLSNNNSVIRLADNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JYH3</accession>
    <name>A0A7D9JYH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088744</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024389">
        <property type="protein sequence ID" value="CAB4038606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JYH3"/>
    <dbReference type="OrthoDB" id="5946158at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22342" checksum="496159A33DC940E2" modified="2020-12-02" version="1" fragment="single">HARLVEDIKLFDVVDLSGVNETTGYHSNSKAYEFTATVGALVAFANVSTQFAKETFLVNEFTVKAYLLPAAGSKGGTIVFFSRGTRKGAAFNVAYEWKTSTSLQVESSFYIEFNGYSVSCEFDNVNGIPRDAWVHLDVRVHMQERLIRCEIGTDTGKKFYRYAGTTSDAPIDQFPLDGKLRLAQQLLSGSEHILGITERFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KWK9</accession>
    <name>A0A7D9KWK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038136</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011580">
        <property type="protein sequence ID" value="CAB4021713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KWK9"/>
    <dbReference type="OrthoDB" id="6126005at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18100" checksum="FC3F24556615D351" modified="2020-12-02" version="1">MQDQVSKLLANDLSTQENCWQPVDKTVKSGKTTMLNKTGKTTISNDVNGDKSSSLWCHANSFSVLGELYTSCGETEERQSEIISTNKAKHDEQWEIPWSKAININLQIRKPDNIVLHVGTNDTKNRKVTEIMNHIDNLCQEIKEAAPGAEIDQPRREYEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KYT1</accession>
    <name>A0A7D9KYT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Allene oxide synthase-lipoxygenase -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A013764</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012316">
        <property type="protein sequence ID" value="CAB4023098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KYT1"/>
    <dbReference type="OrthoDB" id="407298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.180.10">
        <property type="entry name" value="Catalase core domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020835">
        <property type="entry name" value="Catalase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01477">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00308">
        <property type="entry name" value="LH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56634">
        <property type="entry name" value="Heme-dependent catalase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="4" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4023098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="454" mass="52349" checksum="39BC4AF6EC491CFB" modified="2020-12-02" version="1" fragment="single">MHFKAKDGKVRYCRYRAIPGDVDIKEEDESGRLTEEEQREIWIFSRHENEKRPEDYLRQEYVQRLANAPVNYRLQIQIHAASPNDNATIFHAGILWDKETHPWLDLATVSIMTPLSPDVLERTCFNIVNQPDSLGLLEAKSPEDFNSLGELRVAVYSWVQHVRKLKIGSLIPAGQNAVYNIEIETGDREHSGTDATITIRITGVKGRTDYLKLDKWFQNDFEAGSKEQYEVEAFDVGDIQLIELHASGGGLYLLGDPDWFVNKVTIISSSQGRLYSFPCFRWVIKDLVLFPGEATLPFHDVPAIVSEQRKKELEQRKEAYQWDWVSDDMPGNIKATAHSDLPRDVQFTDEKSSSYQESRKAALVNLEIGSLFTMFEDWDNYDDYHILYRNWILGATPNMADRWNQDRWFGYRFLNAANPVVVVRCDALPENFPVTDDDVKASLDRGKTLEEEMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L283</accession>
    <name>A0A7D9L283_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047084</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012755">
        <property type="protein sequence ID" value="CAB4023931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L283"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="9264" checksum="5C35271FEBE82652" modified="2020-12-02" version="1">MTAAGEHFEEKFKARNDCLKTICFGAVLITKAEVIPRNPQIMLHQLEQPDDDLGDALTPREKPNNNSSTVKGVAKPSYIIRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L5K4</accession>
    <name>A0A7D9L5K4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013993</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012576">
        <property type="protein sequence ID" value="CAB4023593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L5K4"/>
    <dbReference type="OrthoDB" id="5986179at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="2">
        <location>
            <begin position="73"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="386"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="386"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="675"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="675" mass="76760" checksum="D11B85B3D73A922F" modified="2020-12-02" version="1" fragment="single">TETRSHTSHEVLLGAADGSDAVKENGKKIHPQVIRFALSIHGKSSSAYRELQDSDALILKRVLSDYKNYFKPKAGINKENVECLREKIKSFTEVQRYVAIVIDEMNIQSNLVFDKHSDDLIGFIDLGDPMVNFVYVEEETFASHALAFLVRGLCTDLKHIIAYFFTKDLTSFQLMPLFWRAVSVLELSLQLYVCAAVNDCASANRKFFRLHSQLAQDLKCDVVYKTRNVFAMSRFIYFFADSPHLIKTARNCLYNSGSCSCSRYLSNNGKFLLYRHVADPFYSDQEFALHTLPKLTLDHIVLTPYSKMEVKLATQLESRRRWLKFRNFLDSNHGIKVNFSGIRVNYYSAWLYATKDDKDYIQSSNHPDLTNGDFPVTNNASLCLQSNAADSETTPDSQAADGHKRKRKRMSIFDVSQLAVSKKIRTRLELLAFANEQKNEGKSGLAQFIANRGSKAVEEALIVGWELEEAEKKLERSKLTRLEVLEKKLEEPCVEGCLGEWLVMAIDILTRNGIDVMVFAGALRVLLEKGREKYRNIYLKGPANCGKTFLLNPLNQIYSTFSNPATTTFAWVGAEDADVIFLNNFRWSKQIIPLYDLLLMLDGQLVHLPAPKSHYSKDATLSSDVPIFCTAKEEISFVKGGVLDATETEMMRLRWNYRGNAIKHSFECPINKINT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L902</accession>
    <name>A0A7D9L902_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A026885</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015325">
        <property type="protein sequence ID" value="CAB4028214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L902"/>
    <dbReference type="OrthoDB" id="8951038at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.80">
        <property type="entry name" value="Gap junction channel protein cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038359">
        <property type="entry name" value="Connexin_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050637">
        <property type="entry name" value="NLRP_innate_immun_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45690">
        <property type="entry name" value="NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45690:SF19">
        <property type="entry name" value="NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50837">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4028214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="623" mass="73246" checksum="2D1FA5EE129DB8D8" modified="2020-12-02" version="1">MLEKLFQYIPRKSYNNFGNVVVLLFFLCGVFIIPIANDFDAKTNIRCSPIPKEISSSQNFVHITCFSKYEEEYHWKIPFGVLVAFNFAIVLTFFILYASWAKSRVARWDIVPNKEDRNEGMAETKNGILLFHIYILHLLFTRFFLLLLFAFAIFYSINFPSNFSCPWRSPLNTIPCVNNMATKKITLAKAVALIDVIFASLALAEVIFIFRWKRSDDEFCLVEDMEFCSVYILQRRENIGSIIRNIRNSPTVNTNFFVKLIIHVNRNKERHEMYDVHLDKLQEQIENIEDIFKPTNNQNNAPRLILIVGRPGIGKTELTKRIQQEWKKKKVTFWKGKLVIRLAFRKFNHENNKRHNLLTLFAHGDGVTPTARGQIFQDLYEFINLNQEKVIVVFDGLDELDVDLEKCWQEKEITQNDPKLTMSIFSLYVKLIRGNFLPNVTIVTTTRRTEDELYQQLNNFDKKLEILGFTESEIKEFVVKFSENNDELNTKTKQKKKGYMFEAKLPSNVIQLADIAKAELDQRKLEFELREDRVHLENCGLLVKIDDEFRNRYSFLHLTIQEYLAALHIFFRSRNNINCISEFLKTKVNEPRWHLVIQFLAGLIGHEIKKCRNNDLITEKRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LAD5</accession>
    <name>A0A7D9LAD5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087487</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016695">
        <property type="protein sequence ID" value="CAB4030189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LAD5"/>
    <dbReference type="OrthoDB" id="6020762at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF13">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="132"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="389" mass="45702" checksum="78ACA44884AF724F" modified="2020-12-02" version="1" fragment="single">ANMESSDDNSDFTDDTFEDSEEEVLKYYFFRGFTYEEILLFLAKRHHCTISYSTLLRRLKKYGLMRRGVTNKDSFENTFLQVQRRIAELINGPGSSMAYRAIWHALELEGIREMDPEGAELRKRHRLKRRAYHNPGPNYSWHMDGYDKLKCWGFPIHGAIDGYSRRILWLRVTRSNNSPNQIASSYAGVVLEQGGCPVQLVTDLGTENGTAAALQSYFRDNSEAHRYVPSPRNQRIEGWWAYYARSHSQWWRNFFKDLESQGIVDTACEINMECLWYCFHKLLQTELDLVKEHWNSHRIRKSRQDTIPGRPDSLYFLPQLHGSREYLFQLAAAEIGFASENIIEDELANDHQEYFEYVRNNLSLSHPEDWEEALNMFRRLMNIAANGYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LB11</accession>
    <name>A0A7D9LB11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041699</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016656">
        <property type="protein sequence ID" value="CAB4030136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LB11"/>
    <dbReference type="OrthoDB" id="5980952at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1047" mass="121140" checksum="688E0FCCDFBAE842" modified="2020-12-02" version="1" fragment="single">MDDPPLKPTTHPMTPVPPDAIEPLFPTDDGTNEDSANVADKRSYVPSGSTPHKPSRKISLVGPSPLKSAKKLTFTKQPSPAQRAAKYLVTRAKGRHSPKELTFSPKQKRNVWTSEEDKSLIEFIALHRDLQPTSSDWPSMRVQHKYWEKAAQFIKENAPTVHIRPSMSIRSRVSFLKTKFSSIDNAEDNLGLTVSHYMSTETPCTNLRNSERMSEQVRRNVDPLILTKDDKILLIKKYMETLTEDEKMECIHEFYDDRCELLSLITKLFTKVNEKVGICQTTEQQLFSKHLDKLYFKIAVMEGIRSNPKHFITTSIKAMKRLQAESRCNLVYKFCQMLTDVNNFDQSSYLMRLDRMPFGLLDYVIQFFTCTNTRQICEPEDYRIWLETMETEFPSRFHRLFAGPMWSNQETKYYGNPHKALTNVPCTSLVSHWSKSKKYTSFSATTDIQVSALDQLKQTNGRFWIKIDGTDIKTALMESARRVWNGDVDMNDGELKKLREQYENHLTDVDKFSKSDCQNLQINGTKLINMFKNDIPYLMNGFQRARAVYHEKFQKQVPNKTLKELNWDIVEHNTLLQQSQLLCENVKDTLDDAFPDELDETTAANIKKLAVKSKSYLCDIYKKRRTAASHVLVTMLSDERRAKKPYALPVRFIAYESLKDQQLRDFNRDIKRKMVERGLKVVGTVTDGEFCSLRSQGETRPLHIWQLIHDSKEAVQKMSKKTLLAMLIKCGESECGDPVVKKPNAAIPHSFINLIHNLQISENLTLEDAVKQVRNSLVPVGYTPYPFKKDTEESFLDMLRSLVATCIYRDAIKHLKGNGVDFSLYIYVPEVDPITKDVRHDRSDHNHLFRRAVKSIRDGNHQGLNFEAFDDVLLDPGSGLTHAVLIGLRKQSLVDAERLVSKFVVRSLRKSEHEKEAQHVQLLVNWHEASDGRSLTQLQRCRYNYNMLNYILDEWMPWHKDCYDFSTIDINRPTNNICGFSRETLVEMTTNIESQEFRRRENDELGYAEHPRAGGTDDLETLFSIAHRKLGTTFTLKDWTEYWPKLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LG95</accession>
    <name>A0A7D9LG95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042206</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005560">
        <property type="protein sequence ID" value="CAB4006637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LG95"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12369" checksum="E6CCD699A1C4DBAA" modified="2020-12-02" version="1" fragment="single">MKLESAKSDLKHTWRILNDLIRKPKSKTIYPESFHFNDTETADPQIISNTFNKYFANIGANLAKVIPNTSVNFTHYLKGSYMHSFVLYETNEDEITKLISELNPNKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LIS9</accession>
    <name>A0A7D9LIS9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Delta-aminolevulinic acid dehydratase</fullName>
            <ecNumber evidence="9">4.2.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A079762</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>2 5-aminolevulinate = porphobilinogen + 2 H2O + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="4.2.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homooctamer; active form. Homohexamer; low activity form.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the ALAD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.24" evidence="9"/>
    <dbReference type="EMBL" id="CACRXK020017475">
        <property type="protein sequence ID" value="CAB4031253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LIS9"/>
    <dbReference type="OrthoDB" id="1530at2759"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004655">
        <property type="term" value="F:porphobilinogen synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001731">
        <property type="entry name" value="ALAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030656">
        <property type="entry name" value="ALAD_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458">
        <property type="entry name" value="DELTA-AMINOLEVULINIC ACID DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458:SF0">
        <property type="entry name" value="DELTA-AMINOLEVULINIC ACID DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00490">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00144">
        <property type="entry name" value="DALDHYDRTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01004">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00169">
        <property type="entry name" value="D_ALA_DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="4 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 9" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4031253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11368" checksum="90926F4C6F723DFB" modified="2020-12-02" version="1">MGLAMRAVERDVNEGADMLMVKPGLPYLDVVRKTKDKFPNLPLAIYQVSGEYAMLYHGSEAGAFSLKDSVLETLQCMRRAGADLIITYFVPQLLDWWLADK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVQ5</accession>
    <name>A0A7D9LVQ5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PiggyBac transposable element-derived protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052752</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027592">
        <property type="protein sequence ID" value="CAB4040995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVQ5"/>
    <dbReference type="OrthoDB" id="5876240at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599:SF3">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PiggyBac transposable element-derived protein" evidence="1">
        <location>
            <begin position="97"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="26811" checksum="E375BD23116DFF10" modified="2020-12-02" version="1">MAEALSMLDSSEDKNDFEGFLIDETVEETRPIAAGTSAVSWRDIAGDSDDDEEDFHGFSDIEVQELNSDSVSKSGSEISNNSFDGIFEWKDNLSSVSVEDFTADFGPQHGLGNTGFKTTMPSKRFQILNKYFHISDPRQENPTDKLTKIRPLISKLENAFQDVYVPGKNISIDEGLIKFNGRLSFKQYMPKKPNKFGIKIWMLADSETYFVPRFQVYLGKQQNADENDAEEARGLRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M6M6</accession>
    <name>A0A7D9M6M6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A034862</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033815">
        <property type="protein sequence ID" value="CAB4044024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M6M6"/>
    <dbReference type="OrthoDB" id="8938935at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4044024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14221" checksum="7B1C74B1449E54FD" modified="2020-12-02" version="1" fragment="single">DENGKYVKAVLKDALVIPTYPQDIFSVRAATSNGANVKFSQDKNELVYKDGTTFIIEEHERLYYLNTVNQLNDDSNISSSYDKVKCLRSDSGTEFMNGDFQDLLRKRAIKHEPSCPNSPHQNGTAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M9Y0</accession>
    <name>A0A7D9M9Y0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034871">
        <property type="protein sequence ID" value="CAB4044417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M9Y0"/>
    <dbReference type="OrthoDB" id="5986908at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="24474" checksum="31F3636F3C104009" modified="2020-12-02" version="1" fragment="single">SWLIVKSQLLASEAERVFGREVKITTEGRRHLGAVIGSTNYKEEYCNEKVNSWREEIEALSDIAKSQPHSAYVAFTKGFKSKFTYFMRTISSFEDYINPIEEAISELFLPALFGQEEPLPEELHEVITLSPAQGGLGIPALSEEAPQQYAASTSITRPHVEAILSQCTSMPEITNEIKTNSSQSRGQMPMQKENVSTSLSQPISYFLLNKRGIKEQAHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MC53</accession>
    <name>A0A7D9MC53_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047926</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036788">
        <property type="protein sequence ID" value="CAB4044906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MC53"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13715" checksum="BFCCCB5AD574F6EC" modified="2020-12-02" version="1" fragment="single">VSRPSLEKKTFGGPVKIVKEKDENVGLKAEIKRLRKIVEQQREFIRQTNVIIENLEADKKRLLAENDLEAAEKEQQLATREETSEYERSFDEESIQLSDVVKSPDGRRLLSADGLFDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FGW6</accession>
    <name>A0A6S7FGW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042802</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000138">
        <property type="protein sequence ID" value="CAB3978745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FGW6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01670">
        <property type="entry name" value="Death"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.30">
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1180" mass="134416" checksum="A390D9E7532D3417" modified="2020-12-02" version="1">MKFLFIEIESLVKSATSFDRSSPTTVVDKTSPSSQMTLVKSRTSVPHLHSSVKDTRTIINSTTTVIPTTVYFITTGPGSTKGASSSGLGLTIGCVIAAVFVVIVVGLVVVLYKRKKSRYENRAGLVKKIITADGGVIEIDDIILRIGPGCLDKDTEITLINCYTDIANKSLVDLDLLDASQRVVEFLPDGLKFLKPADLTIRFEETVSDSELFILHSSHNHDYQRTAWELVTNGIEENNVKGVVNTKINGFCFYSFIMTMGGRRFVRILSHLNHTFTCRAYALYRRSSTVGTIDILVIILSEFVDKNDEEDIQQLKVHLDEGYVKGDKGMLKRVRRDRRLEMSLHFPGVENTPFSFTVDQPQLDSVGFVIDHFQEIAVKSPASGRVKISEVDRNAENNLLWSLNVCVMEQGNNVEEASVHGKLKFASLHSKGGLIKELSFTEPDPEAKVVYRTTKLTNGEIRRMSRRIGVDWDSLAGLLDIPYSKREEIRVNHQKFPDYCSKAEQIFELFNYSKFFDRYYLEKCFEELGRHDLKNEMLPVENETRTNHNEAETQPEVNANEYVELRNTPLSSREMYRLSRCITFDWDSLAGLMDIGREERNSIRQSTLYHDHHARAEKILSMFNHKKGFTREKLRDYLIGIQKHDLIHPVVTGQWRRIDTQNRTISKRPGLVKKIITADGGVIDIDDIILEIGPGCLTKDTEITLRNSHTDIADKSLLDLGLIDAAPRVVEFLPDGLKFLKPADLTVRFQNTVSNTEIFILHCSYNLKYQRTVWELGTTGIEERNVKGVVNTKINGFSFYMFVLATRGMLARILSHLNQSFICRAYALYRRSSTVGAIDISVVILSEFVDESKDEDIKQLKDHLDLGYVKGEKGLLKRVCTDRRLEMSLHFPGVKNTPFSFIVDQSQLDSVGFVIDHFHEIAVKSPVSGKVKISEVDRNIENESLWRINICEIEEEIRVEVAEVQDTAPHPQPEVVHRITKLTNGEITQMSGKIGLDWDSLAGLLDIPYSDREEIRVDYGNHLSISSKSKKVFELFNDSTFFDRHILVKYFKELGRHNLEKEMLPVEDLQNGSEEVETPPKLPEEDLLHTPLSPREISRLGRRIVGEWDRLAGLMDIPIAERDDIRYSLIYNDNRSRAEKILTIFNNKEGFSRNKLARCLDEIQQIDLIKPVITGEWRNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FHN2</accession>
    <name>A0A6S7FHN2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Toxin Bro</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085417</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000132">
        <property type="protein sequence ID" value="CAB3978678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FHN2"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180:SF2">
        <property type="entry name" value="BRO FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="28696" checksum="B481AF1E5BB9E419" modified="2020-12-02" version="1">MDQLFRNKKLNVSVRTVRRGEEVLFYAKDVAESLGYTNTRKAVRDHVWNKNRATVGELQGGNDSFPPSGQQSNTILLYEPGLYQLIFNSKLPIAEAFQDWVFKDVLPSIRKTGSYKLPEPKSLCGKQLQLLNETDLHYAVVRYIRKYHPNALIVPGLGEYQDTVQRRCDAYRKGYIGGQPDILITNPMNGYNGFAIELKTPKGTGEIRDNQVVWLKLLCERGYKTTFFNDYTDLVLKIDEYFRVDLTVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNK1</accession>
    <name>A0A6S7FNK1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Large subunit GTPase 1 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A051762</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000174">
        <property type="protein sequence ID" value="CAB3979177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNK1"/>
    <dbReference type="OrthoDB" id="61815at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000054">
        <property type="term" value="P:ribosomal subunit export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043358">
        <property type="entry name" value="GNL1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45709:SF2">
        <property type="entry name" value="LARGE SUBUNIT GTPASE 1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45709">
        <property type="entry name" value="LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G" evidence="7">
        <location>
            <begin position="564"/>
            <end position="618"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="279"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="296"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="323"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="387"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00040145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3979177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="676" mass="75511" checksum="21B4F42D5B3F1ED9" modified="2020-12-02" version="1">MGKKGKTSVGRAVLKHRSKGGNLGKGKESWLHTSELNDGEELNTKSVTEQSTLDEFLATAKLAGTEFVAEKLNISICNADHSGGLPSRKEEQRIQEVQDQHRQFLQIPRRPKWDERTTPEQLDQLEKDNFLAWRRSLAELQEKDDLILTPFERNLEFWRQLWRVIERSDVVVQIVDARNPSLFRCEDLESYVTEVNSHKVNVLLINKADFLTQKQRETWATYFKNINVKAVFWSAVFETERLKQMKELEKIETLPSQPEVVGETPEAVLTDSHVTQFLNLKQDPDSTEVNGQPSSTDDHELDFDGQRRISSSERDGIKHDYTELSSPMESDTMENNSPHSVDSMRNWSAESVPKESSATKYDTMRSSLMESDTLGDDPSETTQNDPKGNENVENNTKKGDTGDWEMPSNANSFRTSNDNQMQQITSSNIPSDVPKIDQLNLLPGDVISQDCREGISVNVDSGSSGGVVGGISVEKSLHETYKNDGIITDILSNLDALSDVRTGEKPGNDSSTNDMAIAGKNVEFYTSGHLLTGEELLAYCQWLHRQYGGRVETGKEDKEQQTVIGLVGYPNVGKSSTINAILQAKKVPVSSTPGRTKHFQTLLVDKAICLCDCPGLVFPSFVSTKAEMVISGILPIDQLRDHVPPVALISFYEAVFPDDIEAEVLPSSLKDFIVLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNP3</accession>
    <name>A0A6S7FNP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000177">
        <property type="protein sequence ID" value="CAB3979217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNP3"/>
    <dbReference type="OrthoDB" id="5987175at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="463"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="480"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="489" mass="55102" checksum="DFD74603B17098AF" modified="2020-12-02" version="1">MENFGSEKPTTEVSPDQSEEDDLFVEVDIDGSNENDDLPAKSSSFLRQLNQSLHTMVGSIMEKSLKRLHEDKTLPAKRKKPRLATETSGLEEVEENQSSDEDMRALCGPSNADSAESSQTINARLEQDTVTDNCNDSLLSEIENGFSQEDDMGPAITEKRATIINKRWSEKLSDQKLKEKRDQYPRPDNCDRLVAPRINPEIWARIDHTAKQLDLRASTNQSNLAKAGVVVAKSTDKLLSLYQKDSKPEYRELITLNTDALALLGHASCEMSQRRRETLKPHLNKEYTTLCASHVPVTSFLFGDDLQGQLTNIRATNKVSNTISDARKQYKNTQQWRPRSDYDNTQSKIVHFKSGQISKHIAKWHEITSDPEVLGQTYDDCAANVIDTTQLIDNLGFIAHPDKSVFIPTHELDYLGFTLNSKTMQVTITPGKKLNLIETCKELLTKEYPTIREVARCDNASAIESPRTSSLRDPSDPHIGQHRYGGRKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXC8</accession>
    <name>A0A6S7FXC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphatidylinositol transfer alpha isoform-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A000072</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000315">
        <property type="protein sequence ID" value="CAB3980702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXC8"/>
    <dbReference type="OrthoDB" id="18453at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031210">
        <property type="term" value="F:phosphatidylcholine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008525">
        <property type="term" value="F:phosphatidylcholine transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035091">
        <property type="term" value="F:phosphatidylinositol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008526">
        <property type="term" value="F:phosphatidylinositol transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd08888">
        <property type="entry name" value="SRPBCC_PITPNA-B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.530.20:FF:000025">
        <property type="entry name" value="Phosphatidylinositol transfer protein beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001666">
        <property type="entry name" value="PI_transfer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055261">
        <property type="entry name" value="PI_transfer_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10658">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL TRANSFER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10658:SF11">
        <property type="entry name" value="VIBRATOR, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02121">
        <property type="entry name" value="IP_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00391">
        <property type="entry name" value="PITRANSFER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phosphatidylinositol transfer protein N-terminal" evidence="2">
        <location>
            <begin position="18"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="167"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="167"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3980702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="32995" checksum="446132C09B21856A" modified="2020-12-02" version="1">MASKSPPDSKGDLPGTSVVKEYRIPLPISVEEYQIGQLYAVAEASKNETGGGDGIEVVTNEPQEHEEFGKCQYTYKIIHLSKKVPGYVRALAPKGSLEIHEKAWNAYPFCRTWYTNEYMGDSFHIIIDTWHKPGNKDIENVHDLSPELLKKREIVNIDIAKPVESRDYKEDEDPTKFHSEKTGRGPLDPKTWQEDIKTKDMPIMTCYKLYRIKFKWFMLQGKVEDLICKSVKRLLTNFHRQLFCWLDKWFGMTMQDIRQLEEQTKAELEEQRKQGEVRGMTEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FY41</accession>
    <name>A0A6S7FY41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059123</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000735">
        <property type="protein sequence ID" value="CAB3984405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FY41"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="158"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="892" mass="102580" checksum="CB6DB2DF359DF0E5" modified="2020-12-02" version="1">MHQRSCRVIQGLNTELCTDIEEQSNFDTENIPEMDQFIQNEASTSNNQNIPDLNKGIKLPKSSLQWSTANDYFKFALQSNQPITSQDLDSNIKLLNNIVYEYFAQNFGHTDSTPDNSLVNKYKDYTVKDLKRALKTLKSTISEPDEIKYVSHILRAKLRPNNNNNQSSESGLDDSHSNSQTRNHDKYIQKSFWGYIKNVLNRKDTVLPSFNMTQCFSYFTKTLAAIHPNKLFTIPSWIPALSDPEVQFDLDPPSYQQVTNIIRGMKASGSPCPLDQLSIICFKRCPFLRSYLTDLIRAVWLSGTIPSEWKKACTILIHKKGDPNTPSNFRPITLESIPLKVFTSCLRNAMYSFLTANNFIEHNIQKGFTPNLSGTLEHTAQMANIINKARIKQRSLVITLLDLKNAFGEVHHNLVTSVLDYHHIPEHIKLIVESLYTNFQTSIITSEFRTPFISVGRGVLQVDCLSPLLFNMCFNTFIQHIKAEKYRQFGFSFQFLNPIHWFQFADDAAVISSQESENQHLLNRFSIWCQWSNMIIRVDKCCTFGIKKALTKSIQYLPKLLINNQLIPTTRLGENFQYLGRYFNFNMSDEKHKSELTSLVEELMADIDSKPLHPKNKILLYSRYVLSKLSWHFTVTGLSKTWVIENIDSNVNSYIRKWLDISISGTLSTVFLNRNKFGLNICPPSIKFIQCQTVLRKALKMSPNVAINELWKSTSNSKNIQYDNYHSTKQALKDFRSGQEHRLRNQLTCQGSFFTNITKFSLSQLTKLWSTCQSNLPKNIFNFTVRYINNSLPTRQNLARWAISTTSDCTYCLAPETLLHVVAGCQLYLERYTWRHDSVLNFLATNLQTLSGSCLYVDLPGYKSPSIITGDCYRPDLLLICQPQVDVYISWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0G4</accession>
    <name>A0A6S7G0G4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000864">
        <property type="protein sequence ID" value="CAB3985368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0G4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="45807" checksum="C9FC262045D6F224" modified="2020-12-02" version="1">MAILQNKYVLHHVSGPLNTTQYPRVVSWLTARVLVSCVPAGWSLKLLENRTAELYVNYKDSFIVKTRLDMSANLRLSWAGDFDRLKEFVKSDLELQGSWSSPANEKKLFVSDNVELLWWKNKKFLKINGEDANRIKRCMINAMFTSLNLDSIKSGVDMATNTENSLNENQPTKHQCTGCECSKLSPDLEGLKLDLVVLESKLNHKIQAVENQILRMNDCRPKEPKNYANLENMLTTSTPISSGGTNKTKEVSNSNPYINPVVVRTANDACFTPIKVPDNTETFTHSQEELTLTKVVFPVRNNSEQSKIGELSHTGSRINPIQKEQSCHYNVPGRQSCSSYLHDRGQQFRSIPVRITHRPLPVNPEKVNKHRRAYRSQVFRHRHQTDWLRHLELVRKVIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5G2</accession>
    <name>A0A6S7G5G2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tyrosinase tyr-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059530</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000700">
        <property type="protein sequence ID" value="CAB3984122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5G2"/>
    <dbReference type="OrthoDB" id="6132182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1280.10">
        <property type="entry name" value="Di-copper center containing domain from catechol oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008922">
        <property type="entry name" value="Di-copper_centre_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050316">
        <property type="entry name" value="Tyrosinase/Hemocyanin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002227">
        <property type="entry name" value="Tyrosinase_Cu-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11474">
        <property type="entry name" value="TYROSINASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11474:SF126">
        <property type="entry name" value="TYROSINASE-LIKE PROTEIN TYR-1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00264">
        <property type="entry name" value="Tyrosinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00092">
        <property type="entry name" value="TYROSINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48056">
        <property type="entry name" value="Di-copper centre-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0186">Copper</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3984122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="40678" checksum="1620870B03984149" modified="2020-12-02" version="1">MRLTTEERLQYIYAIKTARSDPRYSKKFYDLGYFHTVNFCKELHCKVSLLPWHRWFILQYENLLREIVPNITLVYWDWSMVMANPFNIDLWDDNDWSFGGNGDGVNNTVITGPFKEPEWKMVPGVGRFSNLQFKRKFNYTYPGLPSALHLAILLKLKPNEAQEFLDVLLGWHNNFHSKAFGFVSTMSDEYAVWAPEFFLHHAFLDKCWTDWQEQGYDYQFLPFFTDQTRHMYGTHYLPIDFVDTKYQQGNVCVTYERSKQEWIHKLLRNLTIDQLRDIRGLTFPPFESEQVRKLLTNHSTYVDVIAEFNRKYKLRNPITLDELDGTDRERGFRIHDLIEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5Y0</accession>
    <name>A0A6S7G5Y0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Multidrug resistance 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A072096</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCB family. Multidrug resistance exporter (TC 3.A.1.201) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001129">
        <property type="protein sequence ID" value="CAB3987165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5Y0"/>
    <dbReference type="OrthoDB" id="6500128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015421">
        <property type="term" value="F:ABC-type oligopeptide transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090374">
        <property type="term" value="P:oligopeptide export from mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18577">
        <property type="entry name" value="ABC_6TM_Pgp_ABCB1_D1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03249">
        <property type="entry name" value="ABC_MTABC3_MDL1_MDL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000205">
        <property type="entry name" value="ABC transporter B family member 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1560.10:FF:000018">
        <property type="entry name" value="ATP-binding cassette subfamily B member 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394">
        <property type="entry name" value="ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394:SF27">
        <property type="entry name" value="ATP-DEPENDENT TRANSLOCASE ABCB1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3987165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="703" mass="75923" checksum="4AFD60F3C9169E28" modified="2020-12-02" version="1">MATEKTPLLSSGNGSNTPSVGYAPIAKSGDKDDAVPVVSVRELLRFIDNTDTILLALAILGCFLYGTITPGQFILLGSMTQDLVDYSVCMKNNCSDPIDLEDSMTTVAIWYIGLAAGNFLFSWLGIGLFGYSAERQVHKMRLALFRNAIHQEIGWFDSHSSGEILSRLSEDINKIGDGIGAKFGRIICSLIGFFAGYIIGFIYCWQLAFLMLAQLPLLFVCGAMMAMVTGSYTSKELEAYSKAGHVAEQSISSVKTVAAFGGENKQAELYEKHLDDACNFGIKKGLGLGVGIGSFQLALLSNFALSLWYCVKLVRDGDAEAGDATTVFFCVIFGSMTTGQSAPSFEALGVARAAGYTVFKLIDRVSKIDASSGEGLRPAVVKGDVEFSNIDFVYPTRPDIQVLKGFSLKIPSGKRVALVGESGCGKSTIVKLMQRFYDLVGGSIKLDGNDIKTLNLSYLRSLIGVVNQEPVLFATTIAENIACGREGVTRYETEEAAKMANAHDFITQFPKGYDTLCGERGAQMSGGQKQRISIARALVRNPKILLLDEATSALDTESEAVVQDALNKAGEGRTTIIIAHRLSTIKNADTIVSVQRGSVAETGNHDELMARDGIYSSLVKLQDLAGLKEPEISDGEEDMATTNNVAVPQLEMSTVTSSTHTVLQMSAKVCKLVSFPYLYIGSMSYDSVQHKLFLKIFLLKINT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDI9</accession>
    <name>A0A6S7GDI9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012051</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001594">
        <property type="protein sequence ID" value="CAB3990068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5981580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43977">
        <property type="entry name" value="STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1505" mass="176258" checksum="B19528D067622317" modified="2020-12-02" version="1">MASSTSSGSSKLENLAKEDLVKYIKKQSSQLKQFKSKCEDLQTQLRDKESNVQSLEEEKAAWLSRGVQAEFEKKEEVSAKNEELQMAAELGKQMLEKNDELQGELESLQQNHSNLLQELKAIKYERDELKRSVHSSRQQEERESISAEESARLLDKIKELQVEREETLEKLENLTSERNQLKQTCKDLKKRMHVLESDVERLNKGKKHPAENKIHDLTNEKMELMSKIEMLEEDRTEIIKEFEDLGEFMTRLEQENKDQKSRLELLTKEKEQADGRIHNLSEELDNSRKDAGELKERLDNYGNDQEDIQSTYQNMQREQLETRNKNEELKKQIEELLYSKNDLANSLSLISGQNNELGENNVELKTKYEEVAHELAEMNQRNKELSVQLQTVNQEYSQIKNINNNIRQKLEAEERHKSNVNEEIEKLKVEKEKFTKACRSLKTSLEESKKALDQTTSNYESQKQLIQNLQQDKKKMTQLIKKLKGSASLNTDEKQKSANKYEHEAVISERDGLLLSLKETQKENEQLHENYKSLEKQHENVVFEKDELQEELAEITQINNKLEQDVNNLENEKSHLETAMKDVNDVLRDERKKMEDIFDNMKEELKSNMQMNELLKKQLTQMTSVKDELEERFAKMNEEYNVVLDKNKELEKQLQFTTGEKNKIQHALGAVKRQWEEHQTTCGGSHKELEERIQNLVSEKLEIEKSLDGSTVELATLGDEKQKLLQKINVIEKEKEDITKKLQEQIVSLENEYEEYKNDMENSAQTLGAELTKVNEEKNTLDAEIEEIFHAHDELQMKYDEEINANKQLNDLVLKMSEEKEAVFKENQVLSERLSEIQSNELSTESHYYTEISSLQETNESLLREIQTLRECLEVEGKQNKNQEIPVFSDEVDARNLSDKKNGKSKKLECGHEEEINILDNRVSELTKEKTEIQDEMKETEIEYQNRLATLSQQLDEEKHRSSELEQKIGQLETERLERKEDEPVLQENKTLDEDKEVLKLKEEINVLKDECELLKANIQKLENQTGELRTEVGLWKERYLVKEREKEEQDQELVTLTKSLQNGELIEEDIDDIENVLIKLKQCIIKTQEEISTLKLHLAQRDDEISSLKTSSNSLIEKLKEKETELCAKDELCGKNEQDLLNSKTVLDSLSAKLIEKTDKCQQLANKLEKHELASKDLEENCKTLEILSEDRNKRLLNTEEALSTERQQLKAFQETLENAQQESGEKDKQINKLQETILTLEESLEELKNDSQHKEENIDKQKKLLNTKLEELTKNLKEKETECNSLMEQLRNQNSELNSLNQSLQLQETEFNRTLSSSSNKVQDSLKELELEKNRCSELNDILKEKEETENNLNETLISLRQDILDKEQRIGELDEIRRSLELELTTLKEHQTSFQEEVIKKEEAIQSFASNENDFLKEQEKSLQDLKEKVDCFSKEKVELEEEINRLREVESNTKTYQEKIEKSCKQMEEMQVSNGKMHSTFVSTFSQHLKRLLCFIFLNTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDW9</accession>
    <name>A0A6S7GDW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015320</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001565">
        <property type="protein sequence ID" value="CAB3989885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDW9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="24222" checksum="38E0410FFBC3F8DB" modified="2020-12-02" version="1">MDWLTMVTLDEMERLGRNVNTVEELEVVVRNYVESKIKTRRIYDPVCSECGSKSIVMISGAETCTECGTSDMNSFTYYVSYNNNKDDYLKKKSCHNRVRWFERHLFEHVASGDRDTIREQFRSIVRCIQRLRLQRGRNIIRYKFYLLRIASMNGITLRNPPEDIKTQRIVDILEDRLYGKVFVELGWKPEKCKYYDNWKSKNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHZ6</accession>
    <name>A0A6S7GHZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001867">
        <property type="protein sequence ID" value="CAB3991528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHZ6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="17278" checksum="FA000474140BD57D" modified="2020-12-02" version="1">MSKVVRDDEKLSEKQECIKVTEDRSMINAELGSGIVSTSTGEKRKHCEESDYINEVPIPQKRACMGIKHDHTNSVSTHCRLKQKADNLLDREKNLKRRLKTSRMKSHRMKRKVISLTSVVSELKKEKQLVSSNWPVSWRQLCQGFLRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNK9</accession>
    <name>A0A6S7GNK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rho guanine nucleotide exchange factor 26-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000987">
        <property type="protein sequence ID" value="CAB3986250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNK9"/>
    <dbReference type="OrthoDB" id="5585231at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007266">
        <property type="term" value="P:Rho protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00160">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.900.10">
        <property type="entry name" value="Dbl homology (DH) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035899">
        <property type="entry name" value="DBL_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000219">
        <property type="entry name" value="DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001331">
        <property type="entry name" value="GDS_CDC24_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040181">
        <property type="entry name" value="PKHG5/7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13217">
        <property type="entry name" value="PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13217:SF6">
        <property type="entry name" value="PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00621">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00325">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48065">
        <property type="entry name" value="DBL homology domain (DH-domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00741">
        <property type="entry name" value="DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50010">
        <property type="entry name" value="DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="193"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="331"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="992"/>
            <end position="1042"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="135"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="150"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="263"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="331"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="362"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="381"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1006"/>
            <end position="1023"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1030"/>
            <end position="1039"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1103" mass="126362" checksum="96661A1B66BCA026" modified="2020-12-02" version="1" fragment="single">FSYGYKKSTLVYPQDYIFDIAHLRTNGNLGELIDDMSNIANPEERFEMVKSENRILRERLHNALQREMKAIKTFQKLAHDNRLMHLKLKEYENVNKARLLNSDINEDESPLVNGNDCSPTQTYNGKHRKHARLSLENTQTRTTVDQNFRGTDENSRLRSQDRRELFKTKSSPSLMEGTDDDLIDSLEVRARSASLGSQDSDHIGDNGFPRNKKRSASSGTIDNSVNVVTFPLNRILSGEKRIISFPSNLDVVNEESDFKDSKSTVNRSSLSSEMTQSASSDLESNSPCHTPTLKKNFSENFLAPPNVSLQALHIHSQSLPSALNTKRIRSHSNIEGNNNDLTSKEKQSTSPRCPRRNTADFPRSKFVEHHISTRSLPAESSKSDRKSKKSESRKNSERASSSEDSDNREMSTSPATTRRRRNIKNSPNDVANDIRKFQKMLSTGQISQLSHESDDEEDILQAYEAARSKRHGCRRGSAVVQLPTSSMQMDLHVTTEQPLENSEGRKRQLGSHLALEDKRSSRWSSLLKNKKKLLLQKDRLRMSEDLKEYLSTISRPTRIASETELSLYRETHWTHLMSVTDETGKSRRLSQANNVSLPESEMKRREAVWELFHSEVVYLTAHLLVLKECFLEPLRDIQNKGFLVTVDDKKIFSNVEDLCEVSAKFAKDLLHLFKNEQKDQFGSTASVVTAFTKFKGKVHPQYERYCLSYSKTLHYLETLKQTEHVQDFFKWCESDPRCNRLKLTDLLVAPFQHLTKYPLLLKNIRKRTSEADKEQAPLTTTIKSVEDLIQELEGNVTVIRNYQKLKDLQKNLVWPSVGELDSKSFIPEHLRHVVSHQECGDILASPKRELIYQGPLTLYESAKTDITAFLFDDMLLLTLTKGAKKGNRLRKISASANMPEMHGVPSPLMSRKAPDYTYIVWKQPLPIDRFILYDLDDYPGNSIKNGFVLVHISRFKQAIAIHTLQASSQDVKNIWITKLRDAQTKWNELIEQENEQEKSQNNSPADNRKRNNENIEYHRRMDTDSESAGTNSESNSNEDTSNHIFDEEDMDMQQTIAENTEIADTTDITECDINSNHEHINDIYKQTRPKAPPRKISRLASAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZH0</accession>
    <name>A0A6S7GZH0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Coiled-coil and C2 domain-containing 2A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A006145</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002999">
        <property type="protein sequence ID" value="CAB3997005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZH0"/>
    <dbReference type="OrthoDB" id="2162143at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035869">
        <property type="term" value="C:ciliary transition zone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905515">
        <property type="term" value="P:non-motile cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904491">
        <property type="term" value="P:protein localization to ciliary transition zone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00030">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056290">
        <property type="entry name" value="CEPT76/DRC7_peptidase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052434">
        <property type="entry name" value="Tectonic-like_complex_comp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013136">
        <property type="entry name" value="WSTF_Acf1_Cbp146"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20837">
        <property type="entry name" value="CENTROSOMAL PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20837:SF0">
        <property type="entry name" value="COILED-COIL AND C2 DOMAIN-CONTAINING PROTEIN 2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24656">
        <property type="entry name" value="CEPT76_peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10537">
        <property type="entry name" value="WAC_Acf1_DNA_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51136">
        <property type="entry name" value="WAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="145"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="299"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="188"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="319"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3997005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1083" mass="124708" checksum="9B7D8C96A818CFA6" modified="2020-12-02" version="1">MPLLNRKAFRTDPPPSDLKDDEELFVCRQTNEVYRTYEAFFKRTILCNSLVWSCEITLKDGLTYEEAADSEQDAREKVDRVPQPIKQGVLTLVHYTRHSRLDNLCDDVFNYIRDRYQEGEEIEVKHKGEKLVGYIHNVIEPKVSTNGFDSPKSKTKLKSPSGKSGKASKSPSKTPSKMDVDVIVLSDEENKGERSEVKSPTTSKKNSAWPDAKSYEYMVKLKRKKNTPSKTPEIITVKQSCISRKKGTFSREKLKLLLRLTCCRTGHGNEPGYWKVKDKYRKMFDLSADVDDANITVEKTSKKRKREGGDKEKKKRIKKTDEKKAAGSAQTKKDKTDDKPKVEKAKVEKPKLTPEEIERIKEEFRLKREKEKELRKQERDKLATSDGNEGGPQYFRLHQLEDETRFVDVCELDNCKRFRILQLRNQQVPEFRNFKAVPTRDKDIPDNVFQAYEKRIDGIDEDEAEDDFEVHRAAVTKFLNKVRHQVMARSLIAKRQRDLRDMVIEDEVPDVGSLGFRIAQLLAPRRPLKPVRRERKTIGAQNLSVTSVRILVNVVRAFDIPVRIVQPQTASQALDPRSTTRLTEASTAASSMFTTSSMHGGNAPQNRPVGARTNPLGEPMVRPFVEVVFQGNFIRTTVADGPNPSWNEELTLPFVPPNDDYSPSNLQTVNDVIYLNVFDEVVVDILEDEQQRATNIHQRLERHWLGSIELPFSTVYFNTKVDGTFKISAPAVLLGYQHNQPRTHGAPDIGIGARDQTFLTLFVTIEPPLQPSQPLSEKFETSEDETLIHSAYIWQEELKKKFPKREFKVLATDLNGKKVFLTRYIREQNLPPDFGFDPTNPPPNAMDVACRYVSMIPYISDSVAFPDLCDLWSTSDQFLQMLAGDEEEHAVLLCNYLLWLGKKSWLVIGTGIPEGSTTYVLSSQQGVYQLWNAHTGEKFSVNDAYCPLQNIACLINSENIWANVQQSGQPYRMSFDLTKPKLWRPFFTRKYPNPGLSSVQKPLLNYTRTDPQYVIELQEKIERLLRDKIMEWRPRYVTRWNRYCCQSFRDLLANMEQTYRQRTAQDHKAELDQILSSYKVILF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H117</accession>
    <name>A0A6S7H117_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">1803520Bcalmodulin 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A048572</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001610">
        <property type="protein sequence ID" value="CAB3990151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H117"/>
    <dbReference type="OrthoDB" id="26525at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016460">
        <property type="term" value="C:myosin II complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000001">
        <property type="entry name" value="Calmodulin 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000003">
        <property type="entry name" value="Calmodulin A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050230">
        <property type="entry name" value="CALM/Myosin/TropC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23048:SF0">
        <property type="entry name" value="CALMODULIN LIKE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23048">
        <property type="entry name" value="MYOSIN LIGHT CHAIN 1, 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3990151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="24042" checksum="6109AF88878A1AE8" modified="2020-12-02" version="1">MSRYYQSRNYNEAPAQKQSYGGTSYGKTNTSQNYGASQNYGRGGRKENDEERLMRSLFSTFDNDGDGHISQPEFLKMLSSLGYTISSHEVTQLVNSFDQNGDGEMDFTEFMNMVKYLKSKGYEYGKEALENKIRKAFSVLDANQDGYLSRAELRYVLCNTGNRLSPAEFEDFLKTFDLDNDGHVSCEEYIKIACSSLIDYMDEIVRMKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9U2</accession>
    <name>A0A6S7H9U2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hemicentin-1-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023609</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002169">
        <property type="protein sequence ID" value="CAB3993020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9U2"/>
    <dbReference type="OrthoDB" id="5981886at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24160" checksum="50D25AF7321424D3" modified="2020-12-02" version="1">MIVNYSVCISHEESKPCFKEQTTKEKMLVIASMNASTKYYVRVVASTKVGPGPYSESKGKFTNGDCFTKFHSEYYSTDWSPASKTVGDVLVPGGPRVLTKISSGDIKAKEGDLVNLLCSAQGELPNTFTWEEDQKSLKSFTETEKPHRSSFLVVTVKGQTSFGKYICHIQDRFQSTIHTISIQKATGNATFDLFNLHKFYKTKTNQNTIRFCFKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLW2</accession>
    <name>A0A6S7HLW2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 21">Angiotensin-converting enzyme</fullName>
            <ecNumber evidence="21">3.4.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="23" type="ORF">PACLA_8A055518</name>
    </gene>
    <organism evidence="23 24">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="23" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="23">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>Release of a C-terminal dipeptide, oligopeptide-|-Xaa-Yaa, when Xaa is not Pro, and Yaa is neither Asp nor Glu. Thus, conversion of angiotensin I to angiotensin II, with increase in vasoconstrictor activity, but no action on angiotensin II.</text>
            <dbReference type="EC" id="3.4.15.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="21">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="21">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 20 21">Belongs to the peptidase M2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="23">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.-.-" evidence="21"/>
    <dbReference type="EMBL" id="CACRXK020002801">
        <property type="protein sequence ID" value="CAB3996111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLW2"/>
    <dbReference type="OrthoDB" id="10029630at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008241">
        <property type="term" value="F:peptidyl-dipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06461">
        <property type="entry name" value="M2_ACE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.1370.30:FF:000004">
        <property type="entry name" value="Angiotensin-converting enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001548">
        <property type="entry name" value="Peptidase_M2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10514">
        <property type="entry name" value="ANGIOTENSIN-CONVERTING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10514:SF27">
        <property type="entry name" value="ANGIOTENSIN-CONVERTING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01401">
        <property type="entry name" value="Peptidase_M2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00791">
        <property type="entry name" value="PEPDIPTASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52011">
        <property type="entry name" value="PEPTIDASE_M2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 21" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="9 18" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10 14 21" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6 21" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 17 21" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 21" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="3 21" id="KW-0645">Protease</keyword>
    <keyword evidence="24" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="7 17 21" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="22">
        <location>
            <begin position="585"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="22">
        <location>
            <begin position="591"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor 1" evidence="13">
        <location>
            <position position="328"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor 2" evidence="15">
        <location>
            <position position="328"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor 1" evidence="13">
        <location>
            <position position="457"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor 2" evidence="15">
        <location>
            <position position="457"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>chloride</name>
            <dbReference type="ChEBI" id="CHEBI:17996"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="327"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="327"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="355"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="355"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="glycosylation site" description="N-linked (GlcNAc...) asparagine; partial" evidence="14">
        <location>
            <position position="283"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="18">
        <location>
            <begin position="297"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="18">
        <location>
            <begin position="482"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="23">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00036868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00039858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR601548-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR601548-10"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR601548-11"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR601548-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR601548-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR601548-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PIRSR" id="PIRSR601548-8"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="RuleBase" id="RU361144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="EMBL" id="CAB3996111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="655" mass="75311" checksum="4E699C7A7722F25D" modified="2020-12-02" version="1" fragment="single">MSKTTTRMSWQYETDLNEDNLRRSVQASTKATLFFIEGSNNATAVLAMPGLSKDITRQLMLISRSASPKAEDKLRLLNELQAKMTGIYSKGKVYYLDKQTRKPQYLELEPGLINFMAKSRDYNKLLFAWQGWRDAVGPRMKPLYEEFVKIVNLGAREHDWVDNGYFERSHYELGSNFKPTLNKAWEEIQPLYEELHAYVRYKLSLTYKNVSVHKPIPAHVLGDMWGQHWDHVFDLIKPFPNTSTIDVTQNLRAQNYTVQKMFELAQSFYISIGLDPMPFAFWNMSLFERPKNRKVVCHASAWDFSDGEVRIKMCTKISHSDLIIIHHEMGHCAYFLAYKDKPFAYRGGANPGFHEAIGDTIALSVENPTHLKEIGLLYEAEDTYKNSISFLLRQALQRVAFVPFAFLVDQWRWRVFSGNITSDTYNSEWWNLRTQYQGVAPPVPRHEKDFDPGAKFHIAANSPYISYFFSQILQFQFHRSLCKIARSKQPLHKCSIYKSKKAGKKFREVLAAGSSYPWPQILYKLTGERELRVDAMLEYFEPLLTWLKSERERIKYPIGWKKSNVPVGRKSEIVSTDIDKPIFLKNSSDANKSDHSSGQKSKADSTSFNVSQNGLTASKANTQSRSVLGPLGQTKSSILTRPVFVPSTGKDPLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3R1</accession>
    <name>A0A6S7I3R1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083068</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003988">
        <property type="protein sequence ID" value="CAB4001042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3R1"/>
    <dbReference type="OrthoDB" id="10665655at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="15"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="186"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="214"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="269"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="297"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="353"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="385"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="438"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="558" mass="59789" checksum="1BEAB97BD78863D0" modified="2020-12-02" version="1">MCVHGVGAAVSRLFGSGRQNGGSSQNYATISQDTEHLVQSDSTTVINQSKQRKANQSKPSPRKKLSLINRRKETQANAAKPGKPPRPNPPNFGNVRGPGDGPPKQSGDVLRPPRPDPPSNVGGRGPTDSASKRPGDTSRPPRPVPPSNVGDRGPTDFPPKQFGDVSRPPRPDPPSNVSGRGPTDSASKRPGDISRPPRPDPPSNVGGRMPTDSVSKRHGDISRPPRPDPPSSVGGRGPTDSPPMQHGDISRPPRPDPPSNGGRGLTDSPPKRLGDVSRPPRPDPPSSVGYRGATDSPPKRHGDISRPPRSDPPSSVGGRGPTDSPPKRFGDSPRPPRPAPPSKAVEETSNVSDARRKQLGDIFRPQRPDPPFGVGNRRVNEDSPKTTGGNEVQVTKNADNSPKKQPVSPVKDSATIKLPKRRSSIQKPASPQKPEVISPSSQKTQVKSSAIPLDAENNRVATLRQRLLEMQTTQKRGSRKISIPISKSEGNVAKKTRSLEDKLFCGAGLAPTLFPLFNKPKKTPVPSGQERQHPTLERSFSVGSCVYDCVKFEEFFKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6T1</accession>
    <name>A0A6S7I6T1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007193">
        <property type="protein sequence ID" value="CAB4011570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6T1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="323"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="323"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="340"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="44310" checksum="A810595733ADB164" modified="2020-12-02" version="1">MSQLQIPELKQFLEKLSLDGKYELFLANGIKQVEHLRDIQESDITLLELTVFEWRRLQPETQQTLEDTTRSVKKTSIPAYKTSTASKVISLPKAFKNFFETRDGQGNIVVSTEPLKRKFKDLWYENPCTPAQEFSNSITLQMAEQRMQHEKRKRDCELWCRKQRAKRIYFLLATTEQPLVFNTWTHYFKNQSIMGKLGLIKEQYPTLATFIDDLGNDAVDNVSIPALAMYDTLCQVVGKLEEVSTFCDTAIGKCEEEISSCLINTDGQPKRGYEEELKFFKDTALPKLENLTSIVKNKLNNATEVMEKAREKYCFSQAYKKAKRKGKTSRRHVKQKNCHKKDTQQENKKEQSVTIDDSDLDDIYIDSASGSDPDSEEVTICNATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I778</accession>
    <name>A0A6S7I778_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007920">
        <property type="protein sequence ID" value="CAB4013546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I778"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="16334" checksum="7B088F7451CEF9CA" modified="2020-12-02" version="1">MIDQTVVVFASPVTSTANSAAAILITGVPQALMKMYSLDCSELETSRKCSWRAVLSNNKSLLASSLHSVNVCEGLIFGGLSDEQTVQTANNTKVEIRRFAWRGQDDRQLKIERDRKSVSLEINYAIRFVQVTLAGAKSLPDVRKMVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIN4</accession>
    <name>A0A6S7IIN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004471">
        <property type="protein sequence ID" value="CAB4002868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIN4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14911" checksum="AEF94062F45A6E0E" modified="2020-12-02" version="1">MLSNESQRKSNLNKLLNLRDKVKKRELVKRDDNRKLELFKIWARENAGVLSAVFISSAAVIVGLVVTTRSMAWKLGDESKRINEKLNDMVRNQMKLPPVFLKLADGLEAVGDNIWTIIAGAIGVIFLLYELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKR6</accession>
    <name>A0A6S7IKR6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005531">
        <property type="protein sequence ID" value="CAB4006531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKR6"/>
    <dbReference type="OrthoDB" id="6070127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="18126" checksum="332ABD05942E8E71" modified="2020-12-02" version="1">MALQIECTKYSGGQPLKNQDVNGHLKYEIPQEIVKFLDEGFLISEIAMMLSVSESTICYGLSKLTFSDVTKEQLDAHMSEIAKDFPFCGEKMFKHILEQKGIRVQRMRLRDSIHRVDDGGVANRKKGQLHNRVYNLKGPNHLWHIDTMQSQADTVEFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INH3</accession>
    <name>A0A6S7INH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005258</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011098">
        <property type="protein sequence ID" value="CAB4020735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INH3"/>
    <dbReference type="OrthoDB" id="5978526at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="222"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="222"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="296" mass="33521" checksum="A79F6496358B7A11" modified="2020-12-02" version="1">MAVSNNSLFDAATALFVHDIVDESEFVALYDNTKRKSQEFQYWEYQKVEMQLQYMTNNECRSHFRVDLADLPILAEALRIPEKLFCPNQTVATGMEGLCVALRRFAYPCRFSDMIPHFGCSVSELSLIASGTMLHLQDEAGGTLENCWGFVDGTVRPICCPGENQYIMYNGHKQERKKSLAESDLSSYFQEDAQWPEFFQDKGNPDIAGSCSRHSEAKLNESMKSLNKREARESGSESLSNLESCNSDNDACEYDGFQLTVGHYFVEPERLQEIVDNSAVCKECHCPLSILKKENS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INP3</accession>
    <name>A0A6S7INP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010406">
        <property type="protein sequence ID" value="CAB4019326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INP3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20674" checksum="BF61389454AF7D9E" modified="2020-12-02" version="1">MIDFLNNRRPRVKVDGVTTEFLDINRGVPQGTVLGPIVFTIMVNDIKAVSLSNDLSKFADDIAIKAPVYDYEDSAGYEVENMKLWSNENRMSLNMEKTYEMIVRGKLSTPLPDHIPSIKRKEWLKLLGVTTEDIPVEVWGGASYNKYVSQIDKFVNRAYRNGYTSNRSDFKATISNRDKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRA5</accession>
    <name>A0A6S7IRA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064849</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010853">
        <property type="protein sequence ID" value="CAB4020236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRA5"/>
    <dbReference type="OrthoDB" id="6114255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="196" mass="22795" checksum="F733B32CA98D6087" modified="2020-12-02" version="1" fragment="single">NHSRWGISSSSDCSFCLHPESLLHVVASCQHYLERFTWRHDCILKFLAKTFQSLNECKLLVDLPGFENPSIITGDEYRPDLLVSTSDKHLYVVELTVGFESNLTNNVNREKAKYKNLIRELDQNFTCVKFINLSVSSLGVFDKECHTFVKMLNELGLDNQHQQYCIRKMITIAIRSTYYIFCCRNKEWTNPALMNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRH9</accession>
    <name>A0A6S7IRH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA (Cytosine-5)-methyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A018730</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011684">
        <property type="protein sequence ID" value="CAB4021885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRH9"/>
    <dbReference type="OrthoDB" id="5376140at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022702">
        <property type="entry name" value="Cytosine_MeTrfase1_RFD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12047">
        <property type="entry name" value="DNMT1-RFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RFTS" evidence="4">
        <location>
            <begin position="117"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="18"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4021885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="22047" checksum="54222249E1AE7D02" modified="2020-12-02" version="1" fragment="single">MFSKQNGKRKKSDDETEAENKNNSEDTMDCKRQKTEGKPCENGEVEETSSNESNVMKIPMDIDRKVPTKCSECGQLLECLSLFSGDVDDAVEEFVMLVDPKLSLFTGDETTYGSYEADRPQHRITQFSVYDKSTHLCPFDTGLIVKNKELFLSGYVKPIYDDNTNADGGIATKAIGPINEWWTTGFDGGENVVIGITT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J181</accession>
    <name>A0A6S7J181_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Gamma-aminobutyric acid receptor-associated -like 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A042957</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the ATG8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013671">
        <property type="protein sequence ID" value="CAB4025556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J181"/>
    <dbReference type="OrthoDB" id="6738456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006914">
        <property type="term" value="P:autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd17163">
        <property type="entry name" value="Ubl_ATG8_GABARAPL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.90:FF:000396">
        <property type="entry name" value="GABARAPL2 isoform 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004241">
        <property type="entry name" value="Atg8-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10969">
        <property type="entry name" value="MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02991">
        <property type="entry name" value="ATG8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0072">Autophagy</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4025556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13588" checksum="1EE5630972B4AC06" modified="2020-12-02" version="1">MKWTFKDEHTNEVRRAESAKIRSKYPDRIPVVVEKAPKSTIPDIDKRKFLVPNDLTVAQFMYIIRKRIQLAPEKAMFLFVNKVLPTTSSTMGAIYEEHKDEDGFLYIAYSGENTFGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1G1</accession>
    <name>A0A6S7J1G1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079618</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012571">
        <property type="protein sequence ID" value="CAB4023581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1G1"/>
    <dbReference type="OrthoDB" id="498125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="194" mass="22765" checksum="169C607546C5F3E7" modified="2020-12-02" version="1">MECFHDKPAACSTTARGTFWFCGETPSCEFFCHDEDCYLFTRAIEACQNSGSNHPICPTHQRLAKLRVVKDKMKDSYGRPFFTCSDRHDPCNFWQWGDIYESPRPRCKHEMVCTVRKVKKEGPTQNRLFYCCPQIDNCGFFEWKVIEPRVAKTGFVLFNDPLEYRYKNEDTGETFTGTNTNAKEAYEEFLKKYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5R2</accession>
    <name>A0A6S7J5R2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A083218</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020006089">
        <property type="protein sequence ID" value="CAB4008328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5R2"/>
    <dbReference type="OrthoDB" id="1289171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="107"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="424"/>
            <end position="535"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4008328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="548" mass="62882" checksum="44D2E186E07994B4" modified="2020-12-02" version="1">MHKYLGKNGTESGSGKKNDMALKHGREVPHGVFQIGKSNVKNGCLALALLVGKAYLNDDTNAQKLKRNRNLTLSDLYTDDDITNVYTTSCLPVGPVRINQLEQVYERYLKPEVHRKIVPKVIMNGSKIMSMELEERNVKIIDSYLFLAMRLSKFPEALGIKDVSKGFHPYLFTDLNYVGPMIGLEYFEPPPEGSKERGIFDKWYEQQKGKTYIFREAIYYYCRLDVDILRQGCIIFARLIHKVTGILPFYDRTYNIVAGLALKIYRRNFLQEEQIGQVPACGYGGKNINQSAIAMCWLREIEKELGENNRQLASKLSVGGEVQIMGRYVDGYCDETKTIYQFHGCFYHGGEKCYDGDAYNSIVCEKFFILLASTQQVTSSFQQAGYTVIEKWECDYRNESDITPHRLKQLSLGSFFVYLHLEPRDALFGGRTSPAVLYYDSRITCLPAMYFDVCSLYPHVQKKFEYPTQHPTILRGDACKDVDLNFVFDLIKCKILPPTNLLFPVLPFRLEKLTFPLCRTCVLKQQQQTCNHNDEECALYGTWTSVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J913</accession>
    <name>A0A6S7J913_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003306</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014615">
        <property type="protein sequence ID" value="CAB4027127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J913"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13905" checksum="2DEFACFE0601D406" modified="2020-12-02" version="1">MQDYGSSNLLDVGVINADVETSQFIPSCSSFERSTLSLFFGYSVGSHGITIHGKGNNGDYNGYYWKHGDIIELLLDCDATMLFLNTPTGKQFQVELFKWTKFSRLFVSLNYPKSGLGISELRKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JET1</accession>
    <name>A0A6S7JET1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transmembrane 117-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052839</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008717">
        <property type="protein sequence ID" value="CAB4015441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JET1"/>
    <dbReference type="OrthoDB" id="419441at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070059">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029370">
        <property type="entry name" value="TMEM117"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31226">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 117"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31226:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 117"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15113">
        <property type="entry name" value="TMEM117"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="50"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="138"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="179"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="330"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="382"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="382"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="396"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="436" mass="50061" checksum="F43D04AFB70AECC7" modified="2020-12-02" version="1" fragment="single">YPPGGWSVLKVFILLCGIAVGMSFGKFIVHKRLLRKRLRLQMFQGDQGSWMIMFLTTIISLFIFSHIFNGFLSLGSDLDRYKLSGFFGVSNANFMKFAALGTWTGDFVTAWMVTDIMLQEKLYPSWAVYLRSIWRRKWHRIIAFWAVWILATIIVATGITTDFVKWDDLNRDFVSTNELSRAFLASIILVMDLLIVMQDWDFPHFQSAIDIKLPGVNTSSFYFTPPRCLRKENWAVHVTGKWFNYGVIFIVMILDINMWKNQIFYDPFTFGQYTDSDGYIYTVSNTTFVENANKTTLSHEWRWNHTNPMTNRTYGEDDLRMNSKYLGYSLGVKGLAFVPSIVAFIVFGLLVWFYGRVDAAVNIVSAPSQVDGIVVDQWEYEEKPSHQGGKHDQEMGITSESNSNGKPRPKSGPISVEEVDSKSQPVLTSYEMKTLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEU1</accession>
    <name>A0A6S7JEU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase recombinase xerD-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069137</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008720">
        <property type="protein sequence ID" value="CAB4015451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEU1"/>
    <dbReference type="OrthoDB" id="5949962at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="422" mass="48433" checksum="0200997D2D0D489C" modified="2020-12-02" version="1">MAYDVHASFVYLDDGISGHKCRIDASAASIIQKKDLLCSGLKTNEEKCHWEPMQIGEWLGMIINTINFEFEIPPRKIEKVKKNIQYILSSNHVSYRELAKIAGFINSLYLAVGPPVRLFSRQLFFIISQRDSWAGHLDSVPPLLMEELRFWLDNLRYLNGYNIRPKVSLEPLTIHTDASGVGYGGYFTSLRDVNIHGHWSVEQSGKSSTFRELSAILLVLKTSVQRLQHKKVKIFSDSQSACRIVQVGSRIFELQNIAVDIFNICFINDIMIETQWIPRAENRTADVLSKTIDLDDWKLHPELFVMLHRAWGPFTIDRFAANYNTQLQRFNSRFWCPETEAVDAFTKNWSNEANWVCSPVALIIPVIRHMSVCKAKGTFIVPRWPSAIFWPAIKTKPGKFAPFVKDSLVLLKKKNSTDVHSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFE1</accession>
    <name>A0A6S7JFE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine- kinase SPK-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016365">
        <property type="protein sequence ID" value="CAB4029727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFE1"/>
    <dbReference type="OrthoDB" id="6106497at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050167">
        <property type="entry name" value="Ser_Thr_protein_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23257:SF706">
        <property type="entry name" value="PROTO-ONCOGENE SERINE_THREONINE-PROTEIN KINASE MOS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23257">
        <property type="entry name" value="SERINE-THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19923" checksum="2083D02648AB6593" modified="2020-12-02" version="1">MGVLAVFLANYGVNACKVVVKKLKGESIERKQQFSKEAEMLSRISAHENIPMFLGYSDDGLMMEYAGFDFSPFDSEVVVCNLDNFFYYVDGKFYFNAFADILLVCIKDTVAGLDYLHRHNIVHSDFKPSNVLVSNQHYCYSKDKTFVTEMYAECPIVGKVADFGLSRSLDAQSVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JG92</accession>
    <name>A0A6S7JG92_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PHR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000602</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006902">
        <property type="protein sequence ID" value="CAB4010778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JG92"/>
    <dbReference type="OrthoDB" id="5983342at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.820">
        <property type="entry name" value="PHR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012983">
        <property type="entry name" value="PHR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038648">
        <property type="entry name" value="PHR_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08005">
        <property type="entry name" value="PHR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHR" evidence="1">
        <location>
            <begin position="105"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="27027" checksum="FCE5079D0A448B77" modified="2020-12-02" version="1">MELFKAIVKWADRECARQSINIEHDKTARRRILGDSVYEIPFLAMSLENLVKYVSPTGILTDTEVVSISQKLCGLDVAGLKWKEYKKRQPCIRVSFSRFDPGTVISSGWRYTSGGSDALTLVVNKAVLFHGVRLFGSNGGRYEVKFTIKDKNVTGSYTSEEESDLVLGYDVMLPNPIPLLPNEEITIIATITGPKSYYGDSGKSSVIIDDIVVTFKNALSGLSTNGTRATGGQFYKIFLSELKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JNQ4</accession>
    <name>A0A6S7JNQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059136</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019938">
        <property type="protein sequence ID" value="CAB4034225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JNQ4"/>
    <dbReference type="OrthoDB" id="118550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="172"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="273"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="203"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="273"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="36033" checksum="5CDB2CBB68E84EF8" modified="2020-12-02" version="1" fragment="single">NAIGNDFRILEPVVERNFGLVEIDWNSNPAKIKLQIFGELGSIVSEIVINFDHITKRVIAERCPDVKRPEASLTKIHLFWATIGLIIVAAFLVLVRENIVKVYNERKTPKMTKDITEDITEDITEDITENITEDTTKDITEDITENITNRVSSEKTNAVHSMDDEMAWETDRLRSRTYSNRNTRGNDLSKAKTTTSSASNRIQNRKKKGKHSLKNTSESNDADEIEVQRSRSGRLICPVLDYWRGQRIVTSPCEGEITIIKSNLEEDSRLTLVETSRNSSGSLQNPTITSSAPPSGTNSSGTEWARDSPKAGKNFSHDLIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JUK5</accession>
    <name>A0A6S7JUK5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sarcoplasmic calcium-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A084618</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022040">
        <property type="protein sequence ID" value="CAB4036445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JUK5"/>
    <dbReference type="OrthoDB" id="427950at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028846">
        <property type="entry name" value="Recoverin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23055">
        <property type="entry name" value="CALCIUM BINDING PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4036445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20884" checksum="43B7CE755960DD51" modified="2020-12-02" version="1">MNMSVTEQQKAYHLRKLRTRCHRMDINHDGYLSREDFELMAKRLVEHASGITKEKSEEIYAAFLGIADYIGLKPGVKIPLEEAAKIGSDRRLSPEQPTENIDDLLFDCIDTNSDGHISIEEFKVYFKVIGHDMSDEEIKHSFDTIDSNGGGEISREEFIAAANDFYCGVEETELSNAFYGKLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYS2</accession>
    <name>A0A6S7JYS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Proteasome subunit alpha type-7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A036975</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase T1A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023849">
        <property type="protein sequence ID" value="CAB4038135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYS2"/>
    <dbReference type="OrthoDB" id="3145928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019773">
        <property type="term" value="C:proteasome core complex, alpha-subunit complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051603">
        <property type="term" value="P:proteolysis involved in protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050115">
        <property type="entry name" value="Proteasome_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023332">
        <property type="entry name" value="Proteasome_alpha-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11599">
        <property type="entry name" value="PROTEASOME SUBUNIT ALPHA/BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51475">
        <property type="entry name" value="PROTEASOME_ALPHA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2 3" id="KW-0647">Proteasome</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4038135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15582" checksum="EDB8A2A84B0B4D62" modified="2020-12-02" version="1" fragment="single">KYTQSNGRRPFGISTLIVGFDYDGTPHLYQTDPSGTYHEWKAGAIGRSAKTVLEFLEKHYTTELVASNEETIKLAIKALLEVVQSGAKNLELAIMKRNEPLRILEQDEVEKFVDEIEKEKEAEAERKKQKKTGGTPSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZS0</accession>
    <name>A0A6S7JZS0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 ubiquitin- ligase TRIM71-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011606">
        <property type="protein sequence ID" value="CAB4021762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZS0"/>
    <dbReference type="OrthoDB" id="342730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017868">
        <property type="entry name" value="Filamin/ABP280_repeat-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001258">
        <property type="entry name" value="NHL_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050952">
        <property type="entry name" value="TRIM-NHL_E3_ligases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24104">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24104:SF25">
        <property type="entry name" value="PROTEIN LIN-41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00630">
        <property type="entry name" value="Filamin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01436">
        <property type="entry name" value="NHL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63829">
        <property type="entry name" value="Calcium-dependent phosphotriesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50194">
        <property type="entry name" value="FILAMIN_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51125">
        <property type="entry name" value="NHL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16108" checksum="45B530454C5139EF" modified="2020-12-02" version="1" fragment="single">NGTYLVSYTPELNGKHEISVTIQDKPIKDSPCNVLVINCRGYNEVGSTLMEFACDQSGHIYVADCCNHRVQVFGTKGEFVHFFGAHGKRKGEFNCPTDVAVDTADGVTVCDNVNNRVRSSRMRVHFWANLAARGLGTVSSRAPGGWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1S8</accession>
    <name>A0A6S7K1S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004901</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025206">
        <property type="protein sequence ID" value="CAB4039316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1S8"/>
    <dbReference type="OrthoDB" id="6619433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="73"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="474" mass="53352" checksum="6AD2B3DA498FAC98" modified="2020-12-02" version="1">MCPRSWLCYSPILAKPYCENCWLFADRNHPRFGLQSAWVDGVQSSKKRLLAKIKKHENSLLHTEASAVYLRWKEGKTISDESQKQNQRETNLWVNVLRRVLGVILCLASLSLALRGHDEKVGEGLTQGGDFLGVVTLLSEFDTITNDAISLPKYATRYMNPKIQNELILTTSQLLRKSLVTEINECPFWSIVLDTTSDINRVDQLSVTARWVKVQNENVTIKETFLGFISVTDGTAASLVETTCKYVEDIGLDMEKLRGQAYDRPSVMSGVHNGVQKLIKDHSSKPVPFIHCAAHNLNLVINDAVNSVVDNDNFFGVIQSIYVFFSTSINRSRDLQLLAVDSSLSLKKLCVTSWSSRVDSVRGVRDRFVDILKRLTVISLTSTDKKERDEAVGIKKNIAKIDFIINLVLWERILSCTNSTSKELQSKSVDLSASSRLLSISLSELRYLRNSWESVRMTANALAASWGIPIEFEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K584</accession>
    <name>A0A6S7K584_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidine ammonia-lyase</fullName>
            <ecNumber evidence="3">4.3.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A000393</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PAL/histidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.3" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020024258">
        <property type="protein sequence ID" value="CAB4038481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K584"/>
    <dbReference type="OrthoDB" id="10051290at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004397">
        <property type="term" value="F:histidine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00332">
        <property type="entry name" value="PAL-HAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.200.10:FF:000003">
        <property type="entry name" value="Histidine ammonia-lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.200.10">
        <property type="entry name" value="Fumarase/aspartase (Central domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001106">
        <property type="entry name" value="Aromatic_Lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10362">
        <property type="entry name" value="HISTIDINE AMMONIA-LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00221">
        <property type="entry name" value="Lyase_aromatic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="L-aspartase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4038481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="38842" checksum="2B38F99C169BE3E0" modified="2020-12-02" version="1" fragment="single">LARAIAIARQADVIAAMSLDCLKGTSRAFDSRIHKLRPHRGQITVAQRLRTVLHSEFHPSKIAESHRMCHRVQDAYTLRCCPQVHGIVLDTIEFVKGILTTEMNSATDNPMIFAESGETISGGNFHGEYPAKALDYLAIGVHELANMSERRIERLVNPAYSGLPAFLVENGGLNSGYMVAHYTAASLVSENKVLCHPSSVDSLSTSAGTEDHVSMGGFSARKAVKVVENVEKVLAVELLAACQAIDLLRPLTTTEPLEAVYALVRSHVRTWDKDRRMAPDIDKVTELLRSEKVWQVVSPFIDSYMAARSTRDLESRPSSPTGYNTAATINDETQRTLEMDIEHESCLGTTPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC78</accession>
    <name>A0A6S7KC78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019606</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026839">
        <property type="protein sequence ID" value="CAB4040474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC78"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8126" checksum="DA27CD9DF7C26C48" modified="2020-12-02" version="1" fragment="single">FLTLRTRFLTLSEDKVPDAEDKIPGGEDKVPGAEDKVPGAEDKVPGAEDKVPGAEDKVPGGENKVPGGEDKVPGGEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCP5</accession>
    <name>A0A6S7KCP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Poly [ADP-ribose] polymerase 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A004852</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027037">
        <property type="protein sequence ID" value="CAB4040614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCP5"/>
    <dbReference type="OrthoDB" id="406099at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010629">
        <property type="term" value="P:negative regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01439">
        <property type="entry name" value="TCCD_inducible_PARP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.720.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052056">
        <property type="entry name" value="Mono-ARTD/PARP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012317">
        <property type="entry name" value="Poly(ADP-ribose)pol_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004170">
        <property type="entry name" value="WWE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037197">
        <property type="entry name" value="WWE_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453">
        <property type="entry name" value="PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453:SF67">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00644">
        <property type="entry name" value="PARP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02825">
        <property type="entry name" value="WWE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117839">
        <property type="entry name" value="WWE domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51059">
        <property type="entry name" value="PARP_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50918">
        <property type="entry name" value="WWE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4040614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="403" mass="45638" checksum="F8072BCF7D8474ED" modified="2020-12-02" version="1" fragment="single">GSTRRSLKPTFVSLVAGYSVESVKLLVYARSSDDISSALVEIERFIQNHITSKKVEHEKLFDVVLKHWDELKSLAKDGNLRITCVNETTVSIEGLLSKVLEAKDKLTEMVSRHTDEERRLHQLSYISQNVQWYYSDHSCRSREVVYSAQLNGTIEVACMNGEAMVEITESDGQQYNVDFAQMVARNKSTGQTRKLSRKLIGSATGLELPSNWTHQPVNQVVELVRLTPSSPEYSEVRSHFVAGGGRANQLYSVERIQNPQLYSMYLAFKKSMAMRGQVNEMRLFHGTDAANIHSINTNNFSRSFAGANGTSYGNGVYFARDASYSIKFTKPQHFGTRRKMYMAKVLVGEYTKGVSGMKAPPTKSDPNNPGLRYDSVVNDIRNPRMYIIFQDNQYYPEYLLTLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGF7</accession>
    <name>A0A6S7KGF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035533">
        <property type="protein sequence ID" value="CAB4044595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGF7"/>
    <dbReference type="OrthoDB" id="5987630at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="304" mass="33862" checksum="DBCB0EAD0C0DEB47" modified="2020-12-02" version="1" fragment="single">MPDNKAPGIEKIPIRVIKDCLPVISPWITSIINNSLANNIFPNTWKIAEVTPIPKEGDHELANNNRPISLLPVLSKVCERVALHQLTSYLTTNHRLSVHQSGNKTWHSTETSLIHSTDSILKAIDQKKVTAVILLDMSKAFDNINHNILLAKLEDVGVSSRCLGWLKSYLTERYQAVRINSALSEKLPVVSGVPQGSILGPLLFSIYVNDLPSVAKNCSSESYVDDTKLLLSFRIDDSNIALTDLNEDLIRMRNWCFDNLLLLNPDKTKLMVYGSRQMLAKLPDFRLSLLGKKLTPASSVKDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJP0</accession>
    <name>A0A6S7KJP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046418</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038228">
        <property type="protein sequence ID" value="CAB4045227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJP0"/>
    <dbReference type="OrthoDB" id="3039367at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="38500" checksum="1C5BA89DC61AB1E0" modified="2020-12-02" version="1" fragment="single">SKENVVPAIEIRSQECLPPSSYKALKCCCGKVCKGARGLKMHQRSCRVIDGIEEELQQQMTDALNDQVCEDSVKSVEDVISCLNSQESYPDLKKGIKLPKSPIPWSNANDFFQFTLSNQTITTQEISKCINTMTTVIYNYFSENYGFVDINNNKVFESKYKSASAKDLKKVLKKLKSDNGNLMEIKFVAKKLRNSLRRADTDQQHADINASDEIDHNELINKNFWGYVKNIFTKKSDSLPTFHLAQCTAYFTRIFSAVIPNKIFNIPSWIPKFSSPTTPFNLDPPTYNEIKWCCRKMKPSGSPCPLDQISVICLKRCPYLRTYLTEIIQAACSSGSVASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KTA6</accession>
    <name>A0A6S7KTA6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016554">
        <property type="protein sequence ID" value="CAB4030002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KTA6"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="86"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="21616" checksum="2E32570EDC179119" modified="2020-12-02" version="1" fragment="single">MTFVTPTESSFHFSCISVQETFDALNQLNSRKSPGLDGISVKLLKDTSDVIAQPLANIFNLSLQTAIFPDEWKIAKVSPVFKEGNKTDCGNCRPISVISVVAKLFEGLVYNQLRTFIADNSILVEQQSGFHSQHSTETALLGSTNEWLYNMDSGLINGVLFLNLKKAFDTVDHEILLIKETSPIRQKRNYLRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KTG8</accession>
    <name>A0A6S7KTG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A052166</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016593">
        <property type="protein sequence ID" value="CAB4030052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KTG8"/>
    <dbReference type="OrthoDB" id="6019535at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF269">
        <property type="entry name" value="NUCLEASE HARBI1-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4030052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="446" mass="51332" checksum="EA28DB04ED8E72C3" modified="2020-12-02" version="1">MAAINLRRLLAVKNNIIRLLLLKRRQKRLNRYKKRFSVRQIYAERKQKGEYHLLVKELMLHDQEYFFNCFRMSPTTFEQLLSWIGPLLQRATTKMREPIGPSERLCVCLRYLVTGDAQVTIAASYRISAAVVGRIINETCELLWNTLIEKGYVKHPSTENEWKVIAEEFETCWNFPHCVGAIDGKHVLMQAPGNSGSAYFNYKKTFSIVLMAVCNAKYKFTLVDIGDIGRQSDGSVYGCSHLGYAIENNLLNIPSESKLTNSEKVLPYVFIGDDAFGLKIHMMKPFPSQNLPLDQRVFNYRLSRARRVIENTFGIAASRFRIFRKPIIANVEKVILVTKAVVALHNFLMTINSSRDNYKYCPRTFMDEDGPSGLRAGEWRKDRNAVLGLQPISRTGSNNYSRDAASVRQGFKDYFVFEGAVEWQWELVSRTVIPYDAFLDRLTQPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LJ39</accession>
    <name>A0A6S7LJ39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030699</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018793">
        <property type="protein sequence ID" value="CAB4032899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LJ39"/>
    <dbReference type="OrthoDB" id="5967439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="347" mass="39258" checksum="0B92F194D623A354" modified="2020-12-02" version="1">MKDLWDKKGYEHLGLKSQNLRDQAARLEKINAAAQTRAIGKVSGGAVIDDEREQTLDENHRRHNTISQHEFNNFENQNTISQNANLEVNSNLELHTDNDIVQSSHELQETEAVEGFEVTNDCPGEPHAGIHEAGRLPDYVAVAIPSITIWGHRADGSIITINQSTIINAYDEITRWPKYTFLVPYGKVGRDFIDQLTQHINGWNNASQTQHIALKAAIVLLATVLQKPSVKSKAKDHKECLEKRLALWKEGEVESLLREGRSIQKLLAKAKRTEPPNKAKIFAKFVMEGQINSALRYLSEADCDGVLPLTDDFRRNTLRHKRPNLARYSSGHLRKCTIRYISRSMAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRV5</accession>
    <name>A0A6S7LRV5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Abnormal spindle-like microcephaly-associated homolog isoform X7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029111">
        <property type="protein sequence ID" value="CAB4041893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRV5"/>
    <dbReference type="OrthoDB" id="252964at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd23767">
        <property type="entry name" value="IQCD"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.190:FF:000055">
        <property type="entry name" value="Putative microtubule-associated protein futsch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10699:SF11">
        <property type="entry name" value="IGLOO, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10699">
        <property type="entry name" value="NEUROMODULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00015">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="8"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="328" mass="36766" checksum="EAA1003DB2274FAC" modified="2020-12-02" version="1" fragment="single">TGRDDAKRSHVVERMNQGEDVDIDLNDPAVGNAAVRIQSQFRGYKARREVEEIRQERENDPDIDLNDPEVQKAAVAIQAGFRGIKARAERNRTEQNEVSAGDDLDLNDPELSNAAVKIQANFRGYKSRQETDQMRNAVDGDFNRIELNDPDVENAAKNIQAGYREHKARTEVNQIHENQTDDIDVNDVEMQNAATLIQAGFRGHKSRQEVAKLREMKDDGVDIDLNDPDVQEAASIIQAGYRGHKERTDAASTSEVDLNDPEVENAAKIIQAGYRGHKVRKDLREGNDEEVPEGINLDDPQVQDAAVAIQAGYRGYKTRKELASQQQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSD8</accession>
    <name>A0A6S7LSD8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056448</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027644">
        <property type="protein sequence ID" value="CAB4041019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSD8"/>
    <dbReference type="OrthoDB" id="10568324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00117">
        <property type="entry name" value="TFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.60.10">
        <property type="entry name" value="CD59"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045860">
        <property type="entry name" value="Snake_toxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57302">
        <property type="entry name" value="Snake toxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="14298" checksum="EDDDF4EBB87FF6CF" modified="2020-12-02" version="1">MLSKILLALGVLLAISALGSALKCNVCRYSTSQPKEQQKCTSAPVNCSSSRSYCSTTSITYRNGTEAFGRGCASSSTCPNVEIACNFLTILLDLKSCAAACCTTDNCNNYTPSSATGVMVTKFTLSLMVIVGFIFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSF8</accession>
    <name>A0A6S7LSF8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A000611</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031264">
        <property type="protein sequence ID" value="CAB4042992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSF8"/>
    <dbReference type="OrthoDB" id="5988707at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="90"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="30306" checksum="3630D83E8D88F803" modified="2020-12-02" version="1">MGSKQKRSVKELNNSLTSTPIKPKSKQQKMENLNESEIVKIIGEMSEKLNKLDKLDLIETRLNSIDTDIKDLKHSLTYQQEVVAEVQSVQAVQENKLKVIEEKVGRIEEEKAKLAREIIDMRAHSMRSNLIFYNIREENTPNEKEEVENKIKSLLRDKELNSETEKIEIERAHRLGRNRNGTKPRPIVVKFLRFQDKEMIKRNAYKFKDIGVGISDQFPKEIQEERNKLYPVFKDARSKGHKAFLVKDKLFINGQIYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSG9</accession>
    <name>A0A6S7LSG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Importin-5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A088746</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031360">
        <property type="protein sequence ID" value="CAB4043032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSG9"/>
    <dbReference type="OrthoDB" id="543373at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040122">
        <property type="entry name" value="Importin_beta"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10527">
        <property type="entry name" value="IMPORTIN BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13513">
        <property type="entry name" value="HEAT_EZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4043032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="18696" checksum="70CA91B6C6BFAB7A" modified="2020-12-02" version="1" fragment="single">FLRNAVAGESAIDRFACGIGGKHMLPHIIATVPQMLQNEDWRYRHAGLMAISAVGEGCHKQMLNMLQNLVDSILPFLTDQHPRVRYAACNALGQLSTDFAEGFQQKFHAKVIPGLLHVLDDTENPRVQAHAGAALVNFCEECPKPILLLYLDNTLRKLEVVLRAKLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUA9</accession>
    <name>A0A6S7LUA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059679</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033448">
        <property type="protein sequence ID" value="CAB4043879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUA9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="382" mass="44337" checksum="C8D695E282EB103C" modified="2020-12-02" version="1" fragment="single">MSLKTSKVPQKWKFANLLPLPKESPLNSCNQLRPISLTDIIMRLFEKCVYKSEIEPITRNNIGPDQFAYKKGHNSTMALIKSQHQWLEWLDKNANYVRVLSFDFSKAFDSVPHDLLFEKVKKLPINPYVVNWLISFLENRIQRVMVDGMVTEYLYINRGVPQGTVLSPVLFSIMVDDIKTADPSNALVKFADDLTLGVPGNESGDTSRSEAACLQDWAEENRMPLKLEKTYEMVVRRHTSVVLPELIPSIKRKTWLKLLGVTLQDNPCNWDLHLEEMLKKASGRMYIMRVCKYYGLSIKQLDLLFDSLIMSIFTFAIELWGCAYDGKYLNQIDKFIKRAHKNGYISKRTHIKEIRDKRDKKLWNKITSTEDNALLELLPEKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUZ3</accession>
    <name>A0A6S7LUZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036834">
        <property type="protein sequence ID" value="CAB4044913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUZ3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14048" checksum="90DB0577F1EA00CC" modified="2020-12-02" version="1" fragment="single">MAKNLNSQTNEETFRRFVEIKKKADVIKVVFGKDGKAVVILKNEIDEDYSNEESSNENMKLDGSIISLEFAPLTKGIRISNIPQGPFLDDIRRIFSNKSIGGDPITDMMLDTKNGIANVYFEKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DCR7</accession>
    <name>A0A7D9DCR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030856</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000425">
        <property type="protein sequence ID" value="CAB3981749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DCR7"/>
    <dbReference type="OrthoDB" id="5987001at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="36488" checksum="CAD0C29EAC02EC67" modified="2020-12-02" version="1">MKRPRITTEAFKKKKFAEGNLSRIREGVKDGARAYGLAAVMEFKESEFFPNSKMLTNCKRSYGDHTKILLTQFKLWIETSSSMSEAFKYRSRMFLFYGPLFELFDLATNNGWGLARETCYIQQLPVYAQLNFRNYSSECFIHIVNFLGKWPQLSFRRMLQQNCCVNIDGKKSKGIELDAFVEAEIVQPLKTYVSGHTSVKMCQKLMGSIDLLKQTRSAYTSRDAFDVHPTSHHAVADSFRDQLKGAWFCLHNGWLDLIKETDGCPGYLVDGQGKMEGKVSQCYVDVEEKGKAKLKDNFKSKLYDCFPDLRFELLCKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEG4</accession>
    <name>A0A7D9DEG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Telomere-associated RIF1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A017686</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
            <location evidence="2">Telomere</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000660">
        <property type="protein sequence ID" value="CAB3983806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5399929at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140445">
        <property type="term" value="C:chromosome, telomeric repeat region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022031">
        <property type="entry name" value="Rif1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22928">
        <property type="entry name" value="TELOMERE-ASSOCIATED PROTEIN RIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22928:SF3">
        <property type="entry name" value="TELOMERE-ASSOCIATED PROTEIN RIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12231">
        <property type="entry name" value="Rif1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0158">Chromosome</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0779">Telomere</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="401"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="777"/>
            <end position="801"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1046"/>
            <end position="1087"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1154"/>
            <end position="1187"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1328"/>
            <end position="1373"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1415"/>
            <end position="1478"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1508"/>
            <end position="1584"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1839"/>
            <end position="1871"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1886"/>
            <end position="1908"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="402"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="777"/>
            <end position="789"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="1154"/>
            <end position="1166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1167"/>
            <end position="1183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1346"/>
            <end position="1356"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1508"/>
            <end position="1546"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1553"/>
            <end position="1563"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3983806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2128" mass="236499" checksum="03E497D8D78907E5" modified="2020-12-02" version="1">MVNVPGGNVQPLLSCLEDGSSPPEDKTDAYLRLAEDLAKEDKQFVEEVCNFSSRLMSVLTRDMLSQRIELSQAALQAVGYCIYQDRIVSSLGEAEMSLVLQDLCNVVMRSADKNSCTRAFWGISKQHLSTNVIIEKLPVILNTVEHALQTFESTTVENEALEVIYRLISELPSEKITSTAGQWSKLVYPLLISSAHKIREKALGILELGLKQILLAQQDVVAQLLLDLKGGLLSELANLFTDKKETFVLRTWTVLVTMLGETLHKGGNFINEMLKIPEQGFKSPLPNVQNMGYSAWICLIDNFAISPAYIGSQKKIKLLMMPLLLKSGNVIHKDIERGRLQAWWHLVCAIKPDIYTTTTAFSEVCLPLLQYFFDVSNDSTTTPLAHSKDGLRELTLPVTPISRGQANTPSSSKSGRTPRRKSVVFNKEKFPEAFVKQVVLLGLEMLIEILATNTDQVRKSKRLTEHLQNPILNSTLFQEHLSFFLAVVKSALHSCASYTLDDDLAVSLWSNIVNWIVLLIQNGDPKTTDDVIASLFLTANDILTYSHLSPNLVLKFLEVLTKIPLKYLIHSVAVLSSTCCQGKPLFLLTDILFRQLSAFKESYVDERFHSVFENLVDVGFEAPSGKLITVHNVWLVLEGLASTVANVEDLWRFWSKVTDSVTECVTKTSDVNQGDSLEPDFSLMISLLSFPFKQLFTGGLPVVTTKELDRDLAEFFRLFYRCASLVPAAEANTCIEELSNTLLTVVTQEKCKNVKFLDSISGFIYVMMDCVDFSAQNTRTSPSSTSRVNLTPGGKSRQAENPLGNLSGLLALSATVLSIAYRIDKDSSGSVVVAPAVTVIAGSLSKVFASLTNTQQIKFTIAALSSSVSSFISHHHWSSSNADIRSSDKKCNNTKYLLKIEKLWTDILMCLQSRYKAAFDSQFLEVMSELLECTFCHQRRQLKNQTIMFWNATFGQASHLVYPDSLRVVLQTVMEKTPLTVPGWDQSKIKPVASLDHPAMLQDSEEMTPKENIIKQDVVLANSPKRKHGGSSPGKLKGSFLHKAFSSDKTDRLSPFKNNLETGNKRKSPGSANARRKLPLPLDTSDDKDFVVIAPSPKKKRLLTEHQKEVRKAKKLESGHPALYNMLDQSQDGTQFSDWSQCSLSQSFNHHDVVMSEEKNESKGDSTESQNDGETNKLKSSVRPSIKIPLDNNNNGLDEVAMPTILYPTITKLRDHVIAIPEAQTLPGGIDVAETQTLPDGIVVNETHTLPGRIDVSETQTLPGRIDVSEAQTLPGGIDVAETQTSPGGIDVAETQTLPDGIDVSETQTLPGRIDVCDNKMLSGGSDCTDLNKELNNDDDDDEPIPSSQNTPSTKASRQKRRSRIYLTPKNTKRQFLSREKSEIFELNAGKMELDSESLVNAILLTDLAENSLTHEETNKNGSSEPTLEAKKQKSPKTSPISSRTRFRKNPTPYKTKNKPSKSVESSNKQETTEVNERDMLTDMEEFSDHQMDDTQILEQSVVQVSNKSSDSVETANKLTNEAPSSPVGNSSMKFVHSKTSATGSPLNRPCRSFSSPACSPTTGILKRNRGKSETPSPPGKTRHVSFAFPLKEEKEISFYPLDQVVNNKEVTKPSPELTNTFTSIKATPTKSSTPPLSEGRKEECVFPDLIECTTPVEQILPSLATSRFSRGLGHVVHAQNIRTVGNLSALTEDQVQKLPIRSPKVFTLRRVLRNFHENRAPKNPKVNQLRAIKEVSEEAETEDDIVNGLPELANKEITCDNTKEPTCGNNTPDLSDKELMMALATPSSSVTDSGKMLTPKRSRALVKPTTLFESDTEDLVQNKTDKLFASELSENQDVIKESETRDKLHELSENRQDIKENETSSSEKKQDYIAESTMIEEKMIEEKPPVLSNNVDNEVVPDSEAWSEHRAIETGETGFEMTVADVPDTGEPKQENLEIAKPKNQEIPVYEVPETEDGTQQMLAEDVPATDALKQESQEMVIDDVPEREIHETPVEYVPVTEKPEVKNQEIPVCDVPMAEESKQESQETVVEDMPKAPEQENQEMLIEDAPEELKTENQKIPLEEGVAVEDTINPYVQTIEDLLTLKSQQELSKLPLDLLLSCQEQLMTILSNTTTAIRLKCEPSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DG69</accession>
    <name>A0A7D9DG69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021513</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000653">
        <property type="protein sequence ID" value="CAB3983761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DG69"/>
    <dbReference type="OrthoDB" id="5981938at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.90.10">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029034">
        <property type="entry name" value="Cystine-knot_cytokine"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57501">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="37202" checksum="A6E2F59741EE8A17" modified="2020-12-02" version="1">MASTDHVQFVQLMTTVVSAIQLYSYSVVTGSNFPKMYGHFVVYFTSIICLQLTQSADILDSSDGIDCQPLEQVVAVNSNGRPYFVMLQRCQGSFEDENPERKRCTFNESENVRVQITSGGETDKVEYVILKNHTSCKGECAIECPVPKLFRQDKENCGCTCMHTTAPPGSECGSDQSWDSQECNCKCNLDKNNPPSGKKLDEKQCKFVCKPRDCPGRLKFDSTTCRCAPVVGYVVNEAEPDNTQQGKILAAVVMGEFVFLCLIFDVILYTKKTGLMRYVWFNVLCKSRGNPGDESAGTSPESMHLKNVDEENVPPQDTMVNRNGHTLLAQPVASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGS5</accession>
    <name>A0A7D9DGS5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Reverse transcriptase RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A086921</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000785">
        <property type="protein sequence ID" value="CAB3984792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGS5"/>
    <dbReference type="OrthoDB" id="5986604at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="118"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3984792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="332" mass="37989" checksum="A8D80C36909C742F" modified="2020-12-02" version="1">MKRLFEAGLRLKKSKCRFMQPTLECLGYRIDETGIYPVEAKVKAVQEAPTPTNVTELKAYLGLLNFYGKFLPNLSTELEPLYQLLRKNQRWKWNTEQIRAFERSKTLLQSATVLVHYDPNKKLTVSCDASPYGVGAVLSHEMPDGSERPIAFASRTLTSAEKKYSQLDKEGLAMVFAVKKFHQFLYGRHYTIYTDHKPLLGIFKCEKPVPLMASGRIQRWALTLAAYEYDLIYRPGKENGNADALSRLPLKIEPKSTPIPQEVVNLVDHLNQSPVDALKIKQWTLRDPVLSRVLKFTLQGWPSQVNDENIKPYLTRKDEISVQDGCLLWGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSR1</accession>
    <name>A0A7D9DSR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Angiopoietin-1 receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A040183</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001947">
        <property type="protein sequence ID" value="CAB3991942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSR1"/>
    <dbReference type="OrthoDB" id="411811at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004175">
        <property type="term" value="F:endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005102">
        <property type="term" value="F:signaling receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00108">
        <property type="entry name" value="KR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.2000.10">
        <property type="entry name" value="Frizzled cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.20.10">
        <property type="entry name" value="Plasminogen Kringle 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020067">
        <property type="entry name" value="Frizzled_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036790">
        <property type="entry name" value="Frizzled_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000001">
        <property type="entry name" value="Kringle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013806">
        <property type="entry name" value="Kringle-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018056">
        <property type="entry name" value="Kringle_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038178">
        <property type="entry name" value="Kringle_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050759">
        <property type="entry name" value="Serine_protease_kringle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24261:SF7">
        <property type="entry name" value="KRINGLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24261">
        <property type="entry name" value="PLASMINOGEN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00051">
        <property type="entry name" value="Kringle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00090">
        <property type="entry name" value="TSP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00018">
        <property type="entry name" value="KRINGLE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00130">
        <property type="entry name" value="KR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00209">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57440">
        <property type="entry name" value="Kringle-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50038">
        <property type="entry name" value="FZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00021">
        <property type="entry name" value="KRINGLE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50070">
        <property type="entry name" value="KRINGLE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3 7" id="KW-0420">Kringle</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="359"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="360"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="187"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="7">
        <location>
            <begin position="208"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3991942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="381" mass="43521" checksum="7AA766E7A1F8BAF3" modified="2020-12-02" version="1">MIIITNAAGEHHLQEKNSSCIPAEHEPVYSKWGDCHPLIKLDKPVCEHYGFKLDKYVKVLENDQQVLNNQLWGMQKQFNQIEGQNISTSLECIDQLRFPGCYYAFAGCDRSTSLFKPKKICKESCLHFTKECSAFVKVWKAVYLPTMLAGNPSGALFNCVEKPSRNAEDTPECMHYDRKESLEQEDCLYLNGSSYHGNISVTVSGIPCQLWTDQCPHRHTMNNTYPELNNAKNYCRNPQNSGQRPWCFTTDRNKRWEYCDIPKCIPVDGRYGNWSLNSSCSVTCGEGFETWSRECNNPEPKYSGRNCSHQGEPVDDLSNTLRGSSMIKRSGRAFSDLSNTLSFKRVKTKLFGDRCSGIESGDRYQNHGKLNERSENRDCQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DUI1</accession>
    <name>A0A7D9DUI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029963</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002288">
        <property type="protein sequence ID" value="CAB3993579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DUI1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="114"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15374" checksum="0B9168929D57B806" modified="2020-12-02" version="1">MAENFPSTLLVLVGVGLAVHDKQLSKLFSGVPLIMAYAWKTSEGSEETGPDTAQLAERQTPEDENAQDKGSEETGSDTAQLAERQTLEDENAQDKRSEETGPDTVQLAELQTLEDDKAQDKEETDPDTRQQVKLQPPEDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EC61</accession>
    <name>A0A7D9EC61_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CxC5 like cysteine cluster associated with KDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045747</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004988">
        <property type="protein sequence ID" value="CAB4004747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EC61"/>
    <dbReference type="OrthoDB" id="5970210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041539">
        <property type="entry name" value="CxC5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18718">
        <property type="entry name" value="CxC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxC5 like cysteine cluster associated with KDZ" evidence="1">
        <location>
            <begin position="68"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24971" checksum="ED8EF18BBAE06A7D" modified="2020-12-02" version="1" fragment="single">MSKRRKSSKPDTFSVESLRDEAEKEVNQEVTAAKILNDLGSIKLDAVENVPVVVILCALIVKFEIKYNTLNGTNEGIKVSLKCNKCSKLYGYAKFGNPTDGRKLYPESRSAVEASDVCFVDRSLLKWQISLVCHSWVSFNGFSEAYNEVHKGNFGEKQVAAAFWNGELENELRELGVLDFFGKLRTDKDREEVMTEIDKIRAKTIYEHPQEECSDVCKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EE93</accession>
    <name>A0A7D9EE93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Autophagy-related 16-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005693">
        <property type="protein sequence ID" value="CAB4007094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EE93"/>
    <dbReference type="OrthoDB" id="6018161at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034274">
        <property type="term" value="C:Atg12-Atg5-Atg16 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000421">
        <property type="term" value="C:autophagosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034045">
        <property type="term" value="C:phagophore assembly site membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043495">
        <property type="term" value="F:protein-membrane adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000045">
        <property type="term" value="P:autophagosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:001153">
        <property type="entry name" value="Protein will die slowly-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045160">
        <property type="entry name" value="ATG16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19878">
        <property type="entry name" value="AUTOPHAGY PROTEIN 16-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19878:SF8">
        <property type="entry name" value="AUTOPHAGY-RELATED 16, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="18037" checksum="B0E92269F827F097" modified="2020-12-02" version="1" fragment="single">NRTIFAGSSCNDLVTTSLASTTIISGHFDKRIRFWDSRSDTSSTEIGLQGRVTSLSISPDRNTLLAATRGDTLKLINLRMNQVSGTLSADGLKIATDCTRACFSPDGTYVACGSQDGSIFIWDTSTMKTEKVLKSHGAAVVTCAWHPDGSALVSCDRNKQVVVWSSLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGW8</accession>
    <name>A0A7D9EGW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017804</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006736">
        <property type="protein sequence ID" value="CAB4010282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGW8"/>
    <dbReference type="OrthoDB" id="6161808at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="30592" checksum="132B4A66FE7BB9E2" modified="2020-12-02" version="1">MPREVKCTTQVSQDNHSEVFMSHLTPKENEKLISLVGRRCTVTGKINGKTVEVLSDTRAQVSIVSAKFLQENCTNKDVSELLNCDLTLMAANGNTIPYTGWVELNFQVGESEYALPVLFLVTNENVELPLVGFNVIEHLIKTHKLNCGVILSNFVGMQVALASALVELVNTVNHDELCPVKTRKKNVIIPLGQSVKLSCRANTGPSKPTPILFEADENSQWPSGLEVSDTLLTVKGGKSSRVESEVRNTTRHDIQLRVRTVLGRLQIVQSVVPKFYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIA5</accession>
    <name>A0A7D9EIA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006881">
        <property type="protein sequence ID" value="CAB4010726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EIA5"/>
    <dbReference type="OrthoDB" id="5988894at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8876" checksum="3E348344CC0DFE49" modified="2020-12-02" version="1" fragment="single">MRKSSRQVVFINTSPPEDGVKLLKPLQEINDMEDGSDKVYAPGLVVRCTKRLAKFENLSLADWTAWYDSTGKRYVKPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EXC8</accession>
    <name>A0A7D9EXC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rho family-interacting cell polarization regulator 1 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067991</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009601">
        <property type="protein sequence ID" value="CAB4017558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EXC8"/>
    <dbReference type="OrthoDB" id="5975360at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026136">
        <property type="entry name" value="RIPOR3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15829:SF13">
        <property type="entry name" value="FAM65 N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15829">
        <property type="entry name" value="PROTEIN KINASE PKN/PRK1, EFFECTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="490" mass="54553" checksum="8531FBC673912E4A" modified="2020-12-02" version="1">MAIVVSVLLILEQHPQLQELCEKLEKLDEILQGGKLRKTNLSGSVESALDSFSFLDLTEVGVKPDHELRPSDTGYFSSTDETLKPDQTTAAAPSDPSPVVNGETLEQAAEQTLEQAVEIEEQDQERRDETESPSLLSSQDIGTDCETDTQSYCSDLPAGSTGIIIIDKVLQQHLKFCLRLTKDFGSIGPLKCKETSAVIKLEWQCGILDKLIELVYSKQPPHTISKAYSPLAASGHDEILLFWAGNCGENPLFIECKDFMQAFKEQFNSQVDESYSRIIDRLYPVITTRILDENDSILKPNNDEDSVISIYQFTDFFLIDNRWNLAQFVKDVAEELLTCARLINEEKAVVLTQLQMYNKIPFQQSCCVSAARLLTDSDYRVAGAAGVYFETLLKDVNRRAQAVSYCIEALEDGDEDLRIGACCALQKLEGREACEHLSFLAKCDTVKVKHAAESAVSSFGTDSEPSDDEKNANIWKQTTVMSDVSKSTDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9U8</accession>
    <name>A0A7D9H9U8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Centrosomal protein of 85 kDa-like CC4 coiled-coil domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069051</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000041">
        <property type="protein sequence ID" value="CAB3977302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9U8"/>
    <dbReference type="OrthoDB" id="5972981at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005813">
        <property type="term" value="C:centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058190">
        <property type="entry name" value="CC4_CEP85"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040210">
        <property type="entry name" value="Cep85/Cep85L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31075">
        <property type="entry name" value="CENTROSOMAL PROTEIN OF 85 KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31075:SF4">
        <property type="entry name" value="CENTROSOMAL PROTEIN OF 85 KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24555">
        <property type="entry name" value="CC4_CEP85"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Centrosomal protein of 85 kDa-like CC4 coiled-coil" evidence="1">
        <location>
            <begin position="309"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="505" mass="58881" checksum="4F0D140DA6822ABD" modified="2020-12-02" version="1">MSGLYSALLNGQGSHQNPTHFHPTNRNEETVTNYEQLYVYNSRPAIQPSHEPAVFHNPVGWPGNTSWTLNNSIPSSFIEQIQAKNQLLVKNKEVMEKQGAYISQLEKHLEAQNSSDLLRRLQDRERDVEHLRARLESETAPKYEVEKLRRNLGEAEYELEKTEKVLQETLNEKEVEANTLQAQISGKAKELDHAKREIKRLQEEKSELRTRIENLDKYVGDLPTSEDYKKLRKELKHWKHLCSKLQTQMTQQEEQLTSGRKDLEEKALNADRFERENADLRRMVKSLQDRMKNDEMHSKALELEHMTFENERLQADLAKMEKILKEKQRKAKNFYLHSQESQKKVVERLSQEEDTVAALREEVSTKELNISELKSSMKQLSSQYQDAVEENMDIGDKLKKLQIINNKEAIETNRKIYKQLRRNVNKLKDIMRLYYQRKEGRDLELSLLLGTGASAEGLRTGNHEKSLSDEVGELTSDIDEFQKFLADEYAEELANNLEGNNCITQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HB88</accession>
    <name>A0A7D9HB88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028949</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000114">
        <property type="protein sequence ID" value="CAB3978447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HB88"/>
    <dbReference type="OrthoDB" id="5979050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="23978" checksum="5F6084C2E0A19007" modified="2020-12-02" version="1">MAATTTKLTKNQVSEGLDTFAKWFPEEAASIEKHRDTIIRHIVEGTSPDVGSPLLVQTHAKVSAPPPAENLSLTPCAEAIGVFLADVIIFVLGLAGLRVPFSNRIVRALVRELGEERLRGFVEAIRNFNEALGKWEKAKALFAIIVEIYNVRGFVIVFKVLYDEMTWQDWLITSVKASALIILWVGTDGGIFIAQAVLGIMGAKALIKDGIEAAKVCSCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCX9</accession>
    <name>A0A7D9HCX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084634</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000419">
        <property type="protein sequence ID" value="CAB3981699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCX9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="27999" checksum="45112DDD115D20F6" modified="2020-12-02" version="1">MMKKLLRNFKVESWWSKTRWRTSSSPIKKMKRNCFNGVQSQQYVICVTFESIKAKTNRAWLNKVNSKNGNNWTTQLKRSKEEQADEKVVEDVEDNAKMKTYNQQIRQHRQDESNTSFIKKKKFYIKPLPTSLYGEKTNAKKTRSSKRRQYTIELPDEGMVDDMDPSTERRCPINRNNENTKLINIDVSDVIKLLKYMQRILSALPLVDNFRRIRKIILKTFLKQQVSEFFSGRTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HED3</accession>
    <name>A0A7D9HED3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ubiquitinyl hydrolase 1</fullName>
            <ecNumber evidence="3">3.4.19.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A031555</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).</text>
            <dbReference type="EC" id="3.4.19.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase C19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.12" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020000129">
        <property type="protein sequence ID" value="CAB3978628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HED3"/>
    <dbReference type="OrthoDB" id="5988303at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02257">
        <property type="entry name" value="Peptidase_C19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050164">
        <property type="entry name" value="Peptidase_C19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001394">
        <property type="entry name" value="Peptidase_C19_UCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028889">
        <property type="entry name" value="USP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018200">
        <property type="entry name" value="USP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006:SF888">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00443">
        <property type="entry name" value="UCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00973">
        <property type="entry name" value="USP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50235">
        <property type="entry name" value="USP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0788">Thiol protease</keyword>
    <keyword evidence="5" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="USP" evidence="8">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3978628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15691" checksum="F996399793C5B7A7" modified="2020-12-02" version="1">MEAYKRIVFQELPDAFCIQLLRFSNQGKKMKTIVEYPESPKVEQVMEPETDDVEVISEEQYHLVAVISHQGNTITSGHYTVCALRSGEWFYLNNAQVSKIFGLTARNQEAYVLMYERDTTKKSNAATTTLHSHPNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HG37</accession>
    <name>A0A7D9HG37_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PiggyBac transposable element-derived protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083513</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000337">
        <property type="protein sequence ID" value="CAB3980932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HG37"/>
    <dbReference type="OrthoDB" id="5876240at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599:SF3">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PiggyBac transposable element-derived protein" evidence="1">
        <location>
            <begin position="9"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10811" checksum="FD87FFC56D7252E1" modified="2020-12-02" version="1">MYHTTGAKKSKFGQPYDVCDKLLANHGGKNHHLVVDNYYTSIDLAEQMLLKEIYITGTIRRNWRNLPPLVQKNRRKVKLLQYVRDKCLHWAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HGV8</accession>
    <name>A0A7D9HGV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000384">
        <property type="protein sequence ID" value="CAB3981407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HGV8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21380" checksum="5390ECF0274FE10C" modified="2020-12-02" version="1">MSTKKLPRFSGMSFWFVPKKLVRAQKQILAKKITERGGIVLADYVPETTHVLVPRGISLEDAQKAMKTKDHKPRHLKIVRIDWLPKCIQTCSIVPLLSFEMASHSEATDAQNYEFELSGTSKLPHATKVVDWVKHEDGYGFNLSTEELHLPVIVKAVPIPELQINGIGVFFQFSDDGKLVGFQINIRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HHS3</accession>
    <name>A0A7D9HHS3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050322</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000693">
        <property type="protein sequence ID" value="CAB3984079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HHS3"/>
    <dbReference type="OrthoDB" id="10221010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15561" checksum="1F49625B5B0D3C96" modified="2020-12-02" version="1">MTTIVVGGLFNAVTIAGAGFLFSKLNGQGYKEEVKRHNQALAKLTKAKEKFSESEVKRRNDEARRRVEILDANKDIEKTNRALEDLRNYTRLMDSTASQRRPKLEDYYQPSDEMKRYTVLTVGILGVGGAYGLIRIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIR3</accession>
    <name>A0A7D9HIR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008591</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000528">
        <property type="protein sequence ID" value="CAB3982647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIR3"/>
    <dbReference type="OrthoDB" id="6015585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4020.10">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003309">
        <property type="entry name" value="SCAN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038269">
        <property type="entry name" value="SCAN_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888:SF1">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888">
        <property type="entry name" value="ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02023">
        <property type="entry name" value="SCAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47353">
        <property type="entry name" value="Retrovirus capsid dimerization domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50804">
        <property type="entry name" value="SCAN_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="819" mass="94620" checksum="20B6E3B48F9DBD11" modified="2020-12-02" version="1">MTDYNDWQLDALREECTRRELTINSKDGVKTLAARLRTYDINFVVGKTDEAQALAHDTQPGEFENDEHMQNLSDSLGKLKLTSDLPMKNGGEIPGDTLSFRERMELLRFERDLEREREEREIRREERRQRARFEDRAFEVELEKERAKTPSVSGCSGKFVKVREMRETEDIDDYFRIFEMTAKTQQIPRSEWLGSLAARLSEKAKSIFLEISGLDACNYDKSKEIILKSYQLNVDHYRFRFRHTEKKPDEDFGQWAHRTRRYLDRWMSVAKATGDAEKILDQLVIEHLLNSVGGELCIWLKERKPATAEELATLANETLVREKFVGNNRYTGELMTVLMANGDRTRVPLAWVEIQYGIHKELVGVMHNLPVDCLLGRSSFGLSLTKEDLLKQWDQCVGYSCQSGNLAEEQAFVLTRRQVALQQAQTQLDQRIDKHNQMIVKKLQWNENQGNNESVDDYNLNELFETEPNLNEHNEEPNKECKAPTETIEGKRNILNRDRAQLIQDQAKDVTLSNLKVSDIAPLETGGGVFRVNNVLMHRKFNKYPHDGLFHVDRIVVPESEVKNYCATCPQCQLVERKLVNNRAPLNPVKIVTEPFKKVAIDLIGELPRSKNGYKYILTLAVDYATRYPEAIPLKTTQSRVVAEALVNIFSRVGLPEEIVSDQGSNLVGNLMKQLYELLGIRHIKTSVYHPEANGLVERFNGTLKHMLKKFVGREIESWDKYLPFVLFAYREVPCQSTGYSPFELLFGRTVRGPFTAVKHAWVSSKISEDYLDYVLETRKRLTQMHEIVHENLKGTQENKRNYMIGRVPEGFLGWEIGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKT4</accession>
    <name>A0A7D9HKT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005405</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001180">
        <property type="protein sequence ID" value="CAB3987477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKT4"/>
    <dbReference type="OrthoDB" id="5989627at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="28388" checksum="E2DF9CDC83D94C52" modified="2020-12-02" version="1">MTASFVLFASLVFCFNAIVVSSLTHDQKVDMITEAYTSLKFVVQSLIDVQTEIHEGASTAEDDISTLDDSKTRSEYEVNVMKVDHQMMLAELAKRQEVVTPEEQQSADDRGKAIDEAQAKVEELKKGIADTKTKVNDLNQEMTRTTLSAEDLKALQDKANKESNNPDDHITLPDPADIKLRAADQLANMLTVIDTIVDPVVKTEALDLERAIKTKLIRVLDSPSGFAALTAQCKEIDAALLQFRNLNIYGSAAKMEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HPB3</accession>
    <name>A0A7D9HPB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028148</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001371">
        <property type="protein sequence ID" value="CAB3988736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HPB3"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="39327" checksum="C37C0C0A2C0C09D7" modified="2020-12-02" version="1">MTLLWFRSYLSNRKQVVKIHSTKSELLPVVSGVPHGSILGPILFSIYVNDLPSVPEKCKSNSYVNDTKLSVSFHLQNKQGAIEDMNEDLLKVRNWCFNNLLLLNPKKTKLMVFRSRHKLADLNEFSLSLLGKNIFPSETVKDLGVTLDPLLSYDEHITKTISSCMSRLGQINRIKHVLDRQTLITVINALVFSKLFYCSNVWANTTGKNINKLQSVQNFACRLVSGARKYDHVTPLLKELRWLPVATQLYYRSATMAFKCMTGCVPAYISSQFIKRQEVSNHHTRNSQQLNIPLFKTATGQRTFYYKIVSLWNSLDSSLKLCESVDSFKRRLKTKLLHEFLSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQF8</accession>
    <name>A0A7D9HQF8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024801</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001488">
        <property type="protein sequence ID" value="CAB3989436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQF8"/>
    <dbReference type="OrthoDB" id="5960386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="10255" checksum="F72EA53BA6933822" modified="2020-12-02" version="1">MDEGCGSKGTPQLQHQKKKASSANEKDKDYHRRRRCPVSKCHSIVFRLPVHLRKVHNMKDNFKEYFETLASGHICIGQKESDNSLEGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HT21</accession>
    <name>A0A7D9HT21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064833</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001984">
        <property type="protein sequence ID" value="CAB3992117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HT21"/>
    <dbReference type="OrthoDB" id="5967488at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="32252" checksum="A5F7C5CA9DEF8903" modified="2020-12-02" version="1">MDLIKKMLSIPLERPLTNTQRFTFVSATMAYIMGGLSMTLAPGLWNMAVLLDLTAGGRGYFILVGAGLVDIGLCYVVLSRNKSSQIPNHGPLLGTVVGRLLIINAILIAFYTQGIINARFSLLFSILDSTLAILTYIIWSRENKDASFMKFLQEIWSTVNPFSAKPPPYMIFQALGFAQFFMSFTATSILMSSGVVPSTIQGSHAEGLLRSYFVTMTAQAFLQIHASGARNDSFPIASIFYRVIWNIPVFFLLAMTSQIPRGLANILIIYDVMFIVVTVVLFAREHHVKTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I5Q5</accession>
    <name>A0A7D9I5Q5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045562</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003045">
        <property type="protein sequence ID" value="CAB3997188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I5Q5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8468" checksum="CCEEE51826899813" modified="2020-12-02" version="1">MKKGKVICGAKRKLTYESDDILNASGPPANENTAQQETKYKKRKQEQEHIIGSRVVDMDTLKKGLSNCLLCSEGKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6W5</accession>
    <name>A0A7D9I6W5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071503</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003388">
        <property type="protein sequence ID" value="CAB3998569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6W5"/>
    <dbReference type="OrthoDB" id="6052143at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15399" checksum="60268F6F9EA1A76E" modified="2020-12-02" version="1" fragment="single">MAINNGKWEIFSKYAKLFEDKHPEVEVKLMVLSRRVVASYRQGCLSKARLLFDDYDKLLSKANDILIFEVIYLCLKAALKRAEKELEAARELLKSALLKADQLTPGIITAVPLLFVAMNQNSGLNENGPSSAELSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAR4</accession>
    <name>A0A7D9IAR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">WD40 repeat domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A036615</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004022">
        <property type="protein sequence ID" value="CAB4001187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAR4"/>
    <dbReference type="OrthoDB" id="2096344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848:SF8">
        <property type="entry name" value="F-BOX AND WD REPEAT DOMAIN CONTAINING 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="31325" checksum="20121F87CD7BD091" modified="2020-12-02" version="1">MLSHSVIEKNPDSIGQQLLGSLLSYVDKYPCVNKLVKDIRDTCMKSCHLLPLSSWLELEGPEVFTKNVDSPLLSLVTSNSSTGTIVISGLANGLIKIHELETGKELKVLVHDECQDVAAMSLALSHSKAMLASSSLIGPTILWEMNTYEQRLVLPAGDVVDFSVDDRRLYTGCFKGQLKMWCVITGELLGRVPAHNKQIRSLCTTKDGLYIATGSEDNTIKLWRADTLVYETTLVGHTRSVMCVVATSLSAYQLFLSLAIFEIQSCSVAFTDKLVFTTYVALTLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IH58</accession>
    <name>A0A7D9IH58_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005350">
        <property type="protein sequence ID" value="CAB4005903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IH58"/>
    <dbReference type="OrthoDB" id="5974690at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20276" checksum="FA2E90F10D424276" modified="2020-12-02" version="1">MSTYVFSQVLPEELEDVNQIVGAGTFGECLLKQYLRNPDPNKAIFFHHGISWTWSGIYDSAQVSNQKGYLIDFEKVCKVRNPRAKKYKTVYPHIAPEVLNGDPVSKPCSGVFSYGKILKTIGGQLRNKELLSMGDKASESLPNRRPSLIGIGLHRWLKIIKNYSVIVNHHTFNVNISSLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ISM9</accession>
    <name>A0A7D9ISM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065673</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007466">
        <property type="protein sequence ID" value="CAB4012319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ISM9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12304" checksum="C93CD9CB99628778" modified="2020-12-02" version="1">MEVKLRTETVHFLRSSPHRWDILLNELREKRLPVVKRLCDTRWWAHSAATSALKKRYEDIRAARVSISNDTDEEPATKQEANGLQNKMDQLGNCVLLELWDRNCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IV96</accession>
    <name>A0A7D9IV96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cation channel sperm-associated 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A055158</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010521">
        <property type="protein sequence ID" value="CAB4019551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IV96"/>
    <dbReference type="OrthoDB" id="416585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001669">
        <property type="term" value="C:acrosomal vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036128">
        <property type="term" value="C:CatSper complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005245">
        <property type="term" value="F:voltage-gated calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030317">
        <property type="term" value="P:flagellated sperm motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048240">
        <property type="term" value="P:sperm capacitation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47131">
        <property type="entry name" value="CATION CHANNEL SPERM-ASSOCIATED PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47131:SF1">
        <property type="entry name" value="CATION CHANNEL SPERM-ASSOCIATED PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Ion transport" evidence="5">
        <location>
            <begin position="76"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4019551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="391" mass="45422" checksum="97A2BAB103E33508" modified="2020-12-02" version="1" fragment="single">GEEGVYKVLQIFKEEFKLAMGLTGEIQTRFAVASPIRIDIGLSESANPSFTRATEDIKRRFDANFHKFVNQLTNRPIFNAMIMGVIMLNALVIGLETMDSLKNSHGQLFQIVDELFLSIYTVEFFLKLYAEPKGYWKSSYNRFDFLILFISYIQAILDMINVGDNVLKPLRLLRAARTLRTISFIEGLQVLVIALIETLRHSVLNVVVLLSMSMGFFAVVGYYMFGHDEETGIENENWSSLSAAMLTLFTYVTVDGWTDIQAQLETRPYSQWFTISFIFLGHFIFTNLFIGIIIMNIHEATETFRLQQVMEKEATLQLKKDFLYQRQHNDVKEMLEKQKSSQFVDFKDMCRAFEETLRHEDHVIMTDTSTNLVWMETFITTLDHLDLYTHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IVD8</accession>
    <name>A0A7D9IVD8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Allene oxide synthase-lipoxygenase -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089912</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008799">
        <property type="protein sequence ID" value="CAB4015667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IVD8"/>
    <dbReference type="OrthoDB" id="5947901at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="30070" checksum="477C82517AB301D6" modified="2020-12-02" version="1" fragment="single">MEAHSNSLVLSIAFLPKSKDSGRAIAEQRKKEVGENRKVYKWGTDARYTQDLPGFVEAKGPQSLPKDVRFTDEATLSLFGVGLIDFENHGLGYIYGDWKSWDSLEDFRKLITPAIHSGLPHAAEYWRDDVWFGAQFLNGSNPEVIRKCKKLPDNFPVKNITVDKLLDRGYNLKTAIKTCLIFLVDYKILEGVATMNKPKDKRYITPAMGLFYLKNNDDMVPIAIQLGQQPGEGNPIWTPLQDTEWDWLMAKLWLRCADTQYHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IXM0</accession>
    <name>A0A7D9IXM0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC113664598</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040628</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010145">
        <property type="protein sequence ID" value="CAB4018737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IXM0"/>
    <dbReference type="OrthoDB" id="5948924at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd17039">
        <property type="entry name" value="Ubl_ubiquitin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="549" mass="62126" checksum="6D5B4D2E908ACABF" modified="2020-12-02" version="1">MEVKIHIESECPVPYQTSDLKINLNNVECIGDLKKKLQPLLSVAACDMSVYHKTRRELENREKISNLYVREGDTFIVKFISVCDVHFLSKFFDDMRAFVKDVCEAFSDGDRIVENIDWNADSLSAADNCYENLLANLDICNQDMFSPWKSKPTKANKHFLYKKYPLATICEHVASYFNNKQTELEMCCLSCLWVFSEIEEDRSLVLKKIGLEPFIHSLLKNTPDVDDDDDWTCDVVHASSGCLAGCAEMPGIPQVLAENHEVLTKLFWLTCNAPDDFQKEVAANVLFCCSNHPKAARKIIENQRHCLVLEKAQELELAREDRSALSFTPGVAYFLSLFLANIQTLPEENLLPYDEMQQINQILEAFLHIVTPSEIGRLEAEHSYVWISLIPFLQLALAGPSGSFGTANERLKTRPHVSVDPRSEIGTKPGEKTCDAEISNNRGIGPYNFSPVEKIGLFCLCHLANASENRELFKKEKLEDYLICVCWFAQRCPEVVDLTPKLDGFERLEPPRLESIAKAYLSKCFEPQPKSATKFPSFAILPGSPNVNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3L0</accession>
    <name>A0A7D9J3L0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066075</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011305">
        <property type="protein sequence ID" value="CAB4021180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3L0"/>
    <dbReference type="OrthoDB" id="5984690at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15883" checksum="A8473B3641E13A8C" modified="2020-12-02" version="1">MGSKYNVIRWCMDEGLIARQRDCAHCKNPMNLVKCEDRSDGYKWECRRQEGGKRHKVELSIRQGSWFEKSNMKLEEVLKFTYWWCCDVKQEQICHELNIASHTAVDWDSFCRETCEVTLLEREEKVGGPGKLFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6T0</accession>
    <name>A0A7D9J6T0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A089146</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012301">
        <property type="protein sequence ID" value="CAB4023075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6T0"/>
    <dbReference type="OrthoDB" id="5981450at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031640">
        <property type="term" value="P:killing of cells of another organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16903">
        <property type="entry name" value="pesticin_lyz-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.530.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023347">
        <property type="entry name" value="Lysozyme_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0929">Antimicrobial</keyword>
    <keyword evidence="2" id="KW-0081">Bacteriolytic enzyme</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043758743" evidence="4">
        <location>
            <begin position="24"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="31"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="269"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="31"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="66"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="86"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="97"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="122"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="138"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="150"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="538"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4023075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="538" mass="58917" checksum="EABA1643E90C0999" modified="2020-12-02" version="1" fragment="single">MKTNVHSIAMVIAVLCELSFIEGCLEIDASFSTPRVSGSGTQTTHLRSTITSPQTTDVIPKPTKVSHQLQPTTLSSQSSMVIPQPANASSSPTDINTSPTDASLPSTDTTPSLTDTSRPSSGTSTPATDASASPMQKSSSPTDTRTRPTNASPSTTEASTRPTNASPSPTEASTRPTNASPSPTEASTRPTNASPSPTEASTRPTNESPQPTNVSLPPTNTSPRPSPQPTNASAPSTNIGCKCAEPPKKKPIKKDDCFQVNRGQFTFDAEGKEGGRFHSRKLHVPPDNSGLTIGRGYDMKEKTKQQIEGDLRKAGIDKAKAKLLSRAAGLEGKAAKKFIKDNKLENFKITPCQQKKLFEITYEAMEKDVRNIINRKDVVELYGKADWNKLHPAIKEILIDLQFRGDYTPETRKKIIHRAVTDNYFNVFYFLMKDRKNWKNVPKDRFERRVKFLLDFKVNRGQLTFDAEGQEGGRFHSRMLHFPTDKSGLTIGRGYAMKDKTKKQIENDLREVGICKANAKLLSCAAGLCGKAARKFMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JJ85</accession>
    <name>A0A7D9JJ85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC111086092</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034323</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017197">
        <property type="protein sequence ID" value="CAB4030870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JJ85"/>
    <dbReference type="OrthoDB" id="2326767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.175.10">
        <property type="entry name" value="Diphtheria Toxin, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="548" mass="62691" checksum="44D0A16E6E9C4C1B" modified="2020-12-02" version="1" fragment="single">PYPLTRGLAQYLPPASSKNKSLPFDEATTFAAYQKQPVDDGLKKVVRCLKNPLNLFHEIILRAQFSVTIKLDSGDIQPLYWELTIRAARIDLHCGLDALGVIYQGLFHSKILLKHVQQILDEDKGNNACADLKKSSKEVQKLRELNENLLNLNKFLDCVLLHYSSLNCSLPSSTLIKEIKHTTKKIYQVIKQLKSDSVESVVLNSVLTEEDVLCSVLGLNDDFANRLRNLSEEMRQHKTDMYFLLCFIKEGYDSLNVESLHDTDEVARLQKMGFTENRSNVIAKWIAEQPFPRHKSLFAWAQIYIENLFKYDIFLNDHVSRFPYEEHRLNEWFSVDAGCDESEDGCVSQVSVINTTTHKDACRIADRTKAEFEANSPKENFYFHGTDHKSAQNILENGINLREGQKGCDFSHGCGFYVADKFECALEYAMKSKAAAVVLFNLNDDCLKKGLDLSDPERHQDLQSVREYFQSGEPRNHRLSKKLYKNVKNCNYIIGPISRDGISRNNTWEDVQQICVRNQKMADEIGRPPHVVGIVFLNLEDAQLARKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMP9</accession>
    <name>A0A7D9JMP9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049942</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017955">
        <property type="protein sequence ID" value="CAB4031875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMP9"/>
    <dbReference type="OrthoDB" id="6016233at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23135" checksum="CAA93541F7BEFB2A" modified="2020-12-02" version="1" fragment="single">KLIKAVIGLVGQVFTAALSNPATEEYQKAKNAIEQAIMSVFDTIQSFRSVSLTGFRITSRKFTSDFAALHFKSVAIIYISFPPSHPNGRYKPMEQLRHLHVNLATNLFPARNQSGAYVRPLYYEINDDHSPNHARRTVLGKYTFLPEKKGNHLEMSYARCLQRHTSNIGNSKIETLSHRNSLTTISSSRVFQSFTACVIGMKRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0W2</accession>
    <name>A0A7D9K0W2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088149</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025776">
        <property type="protein sequence ID" value="CAB4039715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0W2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="437" mass="49250" checksum="B845C5AF844F6EE1" modified="2020-12-02" version="1" fragment="single">DSSSGTAYSGASKNVGGDLTDSSLGTVHSGASTNVRSDLATNIRYTNMKQNFAWTMLIPLIVLLGQVFTNTQNNDLYGKICHECLTKNVEWYALAGAMNISRGYRDNDDLSRAEKILSIFNHREGFSRKNLAHCLEEIQQLELVRPVTTGGSRSLSYPAAAEEWDYISMSIPMERRSKVASICPVVGKKIITVKRNAILTADILLNISSSCLAKDTENTLKNDDQNFAFKSSSLLNLRTVKATSPIVEFSTDVLNFSKPAIPTIRFEKTVSDSELFILDGSYTWSYQRTVKEVSTNFTGSKNSRRVVSPKINSFYLHSQILSWHGKLPRLLSHFDRSFTVRADTFNRRLPSKGTENLSCEFVHEKKEEIIKQLKVHFEPCYVGGKKGMLTRVHTDRCPKVASGIRKIREVHRNAENKFLWRLDVLLMEEEINVEEAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K424</accession>
    <name>A0A7D9K424_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052128</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026367">
        <property type="protein sequence ID" value="CAB4040151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K424"/>
    <dbReference type="OrthoDB" id="5954773at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50060">
        <property type="entry name" value="MAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="27724" checksum="E120714460363B2D" modified="2020-12-02" version="1" fragment="single">MCKIGRTISQERVIRCGVPQGSTLGPLLFLLYVNDLPSCLSHSIASMFADDTNLTTSGKSIEDIQNQLNSDLENIHTWLLTNKLTLNKEKTEYMIISSRQRLAKIDDDPKISLDGIDTKRVKQAKTLVDSFSCNFVDFYGCQWSEDANDDFNWIRGSGHKASRKTGPTTDHTRGVGLLANKNQGPGSLQHRGRKCIRVIGDAYNRPKDGQSLVLDQGCWKGQQELQLWPNGTLMLTRHGMCAKPNATGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KWJ4</accession>
    <name>A0A7D9KWJ4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A023992</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020011207">
        <property type="protein sequence ID" value="CAB4020966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KWJ4"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049163">
        <property type="entry name" value="Pif1-like_2B_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF6">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21530">
        <property type="entry name" value="Pif1_2B_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="200"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like 2B" evidence="3">
        <location>
            <begin position="473"/>
            <end position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4020966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="650" mass="73550" checksum="8224F656E3C05F23" modified="2020-12-02" version="1">MNFVQFATTYKVVNNELIKLPENIIPRIFPTYSPNPKGPNFGLYCKYQLLRYKPWRATQNNAWGNQEPTDEVLINCWHEFLQTPYGQSNVPDWFDKLQTVIESQEAEDEPEEQKTTRKEWMILSDLNTPFDNSEQTPESTCDWHLDRANYSEQQIQEMPTWIKINKEEYTVDEQCDVVDINSFSEMQKLAYDIVKSHFDDTSSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVTATTGKAAYNIRGVTVHSLLKLPIGSRGKKDLTGQSLCRLQESVDNIGYIIIDEYSMLGQVTFGWIDKRCKQATGYNDKVFGGRSLILTGDPGQLPPVADKPLYHAKPSNAIGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQVQFRDLLLRLRKGDSTVDDWKLLLTRQPSNVTNLCDFEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAIIVEFENYRGPVFNENQPLCIPIIPITVASQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSLKSSANLQYRLEEENRLDQLAQATSSAFRTTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L7M7</accession>
    <name>A0A7D9L7M7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Organic cation transporter -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A076593</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015894">
        <property type="protein sequence ID" value="CAB4029035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L7M7"/>
    <dbReference type="OrthoDB" id="5970406at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24064">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 22 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4029035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="20492" checksum="9D11EE6ACB6FC2FE" modified="2020-12-02" version="1" fragment="single">FTNALVYFGVSFGSVDLGGNIYLNFFLISLVGVPANFALMWAVNRFGRKVCVITGLIITIVASSISVSIPADQNPANIGGRITAAIIAKFFIGFSFNGCYVWTSELYPTVIRATGMSTSSSAARIGSFAASYIIWLIRIHVALPYSIFGAICLQAALLGLLLPETKGAATLETMDDMKTEQEMSLHVFAND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L828</accession>
    <name>A0A7D9L828_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081164</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014570">
        <property type="protein sequence ID" value="CAB4027045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L828"/>
    <dbReference type="OrthoDB" id="5966383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF31">
        <property type="entry name" value="OS01G0873500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="27700" checksum="1D23B8729C7AA995" modified="2020-12-02" version="1">MAQEDKLFIDKLEGVKNWQVWKYQMQVILEARELWGHVDGTATSPALSESSSSSSSAQTAFEKAQRKTKALLVTSINSNLVHLITEPKQIWDKLKERFERNIVANKLFLKQKLFSLKMKDCDSLDDHLRRIKEITDQLAAIKAPIPEDEHIVALLLSLPQSYNTLTTALTAKGDELSLTQVHQALMSEEEKCGLYKGKDGGGRVDKGETALQHEKTSRKPIKCFGCVEENHVIRNCPERKKERAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8G5</accession>
    <name>A0A7D9L8G5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Furin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A083941</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014722">
        <property type="protein sequence ID" value="CAB4027300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8G5"/>
    <dbReference type="OrthoDB" id="10072345at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="3">
        <location>
            <begin position="390"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="338"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="215"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="21"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="347"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="365"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4027300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="534" mass="59470" checksum="25D0234ABA2DBA69" modified="2020-12-02" version="1">MATDDEIGNLTASNLESEDLELAKDSSDPHDYLSSDEINNEDGLIVTDKGNLKWNGSYMGLKNFIMMQQISAEHWTSSGGDCKKCEDSGLIIRWYSSKGSLTFGGEKSKEVKNKLLLLAQNKEEVRTKSSCDKQQDNLHTVQTKPNGPLGAVFTQAAIQQRDHPQNEFIIKVEKFIETTNLKISNLVSEVSELKMNKSNSTLTNNDASVANNDLVNLLSNENQDLKNEIKLLREKNINITHSVADLNSKIEELESEKQSLKTALKILYADLETAEGNMQSLTDKHEAHGQQHPWITVPGKSKGHPINLELNNNNKYSALHVEDDTEIVIDSDETKASVNSAGSRNKYFPHHTPKTKTTRKLQDPKPSSTTSAQQRKIAILGDSMIKGINSRKLQHGLKQKVIVKTFPGAHVEDMTHYVKPTLASNPAEVIVHIGTNDLKNKSPSTLLKTVDNLGEMITESKDVKLTLSEIITRCDDETLADKVNIYNELLANLCTERNWGLIKNSNIKKDHLNNYGLHLNPRGSTVLAKNLNCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L947</accession>
    <name>A0A7D9L947_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A068633</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015378">
        <property type="protein sequence ID" value="CAB4028292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L947"/>
    <dbReference type="OrthoDB" id="10535220at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043983313" evidence="2">
        <location>
            <begin position="35"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="105"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="148"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="24804" checksum="CBF946BDE48CFF1D" modified="2020-12-02" version="1">MINKASKQLAVGRNMKCYILVIWFVLVLSKTSQAALPLCSSGLSSVITSSCRFTPGEHKYTSLDIRSDVFLDTSSSNAVHTFIISGDFILRSGAVLSVGYNQESNTGAAPGNSGGSHGGRGGAESGTTLEANEGVPYGSSLVVNTPGSKGGNGGQGGGLLKIQASGVTIDGSIRTNGEHGLRDRKSGGGSGGGVAIQCITLAGVGDVDVRGGLGQNNGGGGSGGRISVNCTNDAFSGTFQVQGGKTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFY7</accession>
    <name>A0A7D9LFY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006012</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018912">
        <property type="protein sequence ID" value="CAB4033046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFY7"/>
    <dbReference type="OrthoDB" id="5976086at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17324" checksum="4CD6F2E8AA5C57C4" modified="2020-12-02" version="1">MGSRWSKSIQTIVNRKKESEDLTKVIHQLFSGGLESIVELGAESVLGNDSVGEYESTDMFIVWSDNALLRCDTYYYRWNFVSKSVINEVEGVTGCLLMKRVIDITKTDPQVLTWAITRMADRFNNAAEEKPGDSEDVINEALKILKNVVTFHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQM0</accession>
    <name>A0A7D9LQM0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">carbonyl reductase (NADPH)</fullName>
            <ecNumber evidence="4">1.1.1.184</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A061324</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.184" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020020351">
        <property type="protein sequence ID" value="CAB4034710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQM0"/>
    <dbReference type="OrthoDB" id="7289984at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004090">
        <property type="term" value="F:carbonyl reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd05324">
        <property type="entry name" value="carb_red_PTCR-like_SDR_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045313">
        <property type="entry name" value="CBR1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43963">
        <property type="entry name" value="CARBONYL REDUCTASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43963:SF6">
        <property type="entry name" value="CHAIN DEHYDROGENASE FAMILY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G15350)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="287"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="294"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00026118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4034710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="34103" checksum="134840C7D8EA5263" modified="2020-12-02" version="1">MPVKLFSGKVCENSSVCWPKFNVKSSKISIKMSVRRVAVVTGGNKGIGYEIVKALCSKFDGIVYLTARDEQRGLDACKKLVEEGCQNPPKFHQLDIESKESIERLRDYIKAKYNGLDVLVNNAGFAYKKKSTAPFNEVAENTMRINFTGTLNVCRSLFPLLNPHARVVHVASMAGTLSIIRSESLRNELTRPNLTESELVALVQEFVEGAKTGDHESKGWPMKGYAVTKLAINILTTIQARDRPYDKDTDVLINSCCPGWCRTDMAGQSASKSAAEGAETPVFLALIPPGQEQPHGKNYSELKERSWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZV8</accession>
    <name>A0A7D9LZV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A027967</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026006">
        <property type="protein sequence ID" value="CAB4039889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZV8"/>
    <dbReference type="OrthoDB" id="6765075at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="43"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="212"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="35157" checksum="9DAB7D1B7612E4A0" modified="2020-12-02" version="1" fragment="single">HKPRRIPFHMRQKVSDALDTLESDGIIEKVSDATPWVSPLVVIPKKDGEIRLCIDMRMANQAIQRERHPTPTVDDLIHKLIGATIFTKLDLCSGYHQLSLAEESRHITTFVTHKGLYRYKKLNFGTNSASEIFQHVISEQIRDIPNAINISDGISPDPAKVSAIHNCPSPNSIKAVRSFLGMVTYCAKFIPNFSDLTKPLRELTRKNVPFCWTSRHAKSFNAVKAALTSATVMAYFDQTKETELITDASPFGLAAILTQKVPGSDQRNVVAYISRSLSDVERRYCQTEREALAIVWAIERVYISIYTEDILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2L6</accession>
    <name>A0A7D9M2L6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Low-density lipo receptor-related 2 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A089223</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030613">
        <property type="protein sequence ID" value="CAB4042684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2L6"/>
    <dbReference type="OrthoDB" id="10063075at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016324">
        <property type="term" value="C:apical plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042562">
        <property type="term" value="F:hormone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006898">
        <property type="term" value="P:receptor-mediated endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00112">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.400.10:FF:000002">
        <property type="entry name" value="Low-density lipoprotein receptor-related protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.400.10">
        <property type="entry name" value="Low-density Lipoprotein Receptor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036055">
        <property type="entry name" value="LDL_receptor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051221">
        <property type="entry name" value="LDLR-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023415">
        <property type="entry name" value="LDLR_class-A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002172">
        <property type="entry name" value="LDrepeatLR_classA_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22722">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22722:SF14">
        <property type="entry name" value="MEGALIN, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00057">
        <property type="entry name" value="Ldl_recept_a"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00261">
        <property type="entry name" value="LDLRECEPTOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00192">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57424">
        <property type="entry name" value="LDL receptor-like module"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01209">
        <property type="entry name" value="LDLRA_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50068">
        <property type="entry name" value="LDLRA_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 10" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="57"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="69"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="83"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="90"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4042684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13025" checksum="28E3C33F957283C9" modified="2020-12-02" version="1" fragment="single">VPTTPPRCPSDKFQCRTTLQCIPLEVKCNGEADCPDGSDELPSECKTTCKDLGMFECDNGRCINKTLVCDRRWDCGDSSDEECCGHSFKCANGVCITSSWTCDGEDDCGDNSDESEQKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MFL8</accession>
    <name>A0A7D9MFL8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089883</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036276">
        <property type="protein sequence ID" value="CAB4044803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MFL8"/>
    <dbReference type="OrthoDB" id="6110868at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031248">
        <property type="entry name" value="RNF213"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605:SF16">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605">
        <property type="entry name" value="RZ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="18830" checksum="42818AB1963E37DB" modified="2020-12-02" version="1" fragment="single">MQSYQCSPLSTPEGIVSTFKQCAKLQKDKDLNKFVSVVVLDEIGLAEDSPLMPLKTLHPLLEDGTATTVETGTTSDHHRVGFIGLSNWALDPAKMNRGIMLSRGVPSEDELCDSARGICSGNKDIQSRLEDCIWRLCNGYFDLYKRQSDSKTLQKSQKDEFFGLRDFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FGT4</accession>
    <name>A0A6S7FGT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074464</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000004">
        <property type="protein sequence ID" value="CAB3976607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FGT4"/>
    <dbReference type="OrthoDB" id="8774892at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038927">
        <property type="entry name" value="C6orf163"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34645:SF1">
        <property type="entry name" value="GENE 136-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34645">
        <property type="entry name" value="SIMILAR TO HYPOTHETICAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="313" mass="36605" checksum="3D39509E8B37ADF0" modified="2020-12-02" version="1">MAEFISKRGQAIANGTSYKNADTLESQHTTHRDILKFGNKVYERKCAELEKLREESLAELEVRLWQIANEERDQAVKETFQQGQQELKLSQESAKKEKEKAVKAECRRVEAYMKKQAQQHLEEANQAYRVQLKDALHDARIEFEVEKMLAIREAREEEIGSAVEEAARTADVEETKRKKIILEAEKEKAEALKKLKLKMEEEARIDIAETEKRCHLMSLEELRKCEETHLAEMDKLRKKITHQDSEYEDIKHQLSQKEKIRRKTETKLREVVEEFQNFIDLTKGFTKGQSEFLLPDVNLLQDMLKGAVLSCQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWD6</accession>
    <name>A0A6S7FWD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Deformed epidermal autoregulatory factor 1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A084731</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000288">
        <property type="protein sequence ID" value="CAB3980402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWD6"/>
    <dbReference type="OrthoDB" id="437457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.390.10:FF:000004">
        <property type="entry name" value="Deformed epidermal autoregulatory factor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.390.10">
        <property type="entry name" value="SAND domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010919">
        <property type="entry name" value="SAND-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000770">
        <property type="entry name" value="SAND_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10417">
        <property type="entry name" value="GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01342">
        <property type="entry name" value="SAND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00258">
        <property type="entry name" value="SAND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63763">
        <property type="entry name" value="SAND domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50864">
        <property type="entry name" value="SAND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="260"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="404"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="283"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3980402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="474" mass="51562" checksum="CAA2E9C1B949058C" modified="2020-12-02" version="1">MEAEITRSNDEYSLAEHDVAQQIDISDTIPSEHEGVAEVYQNTTESSEEGQQAAIEVANTRFTFPASTSTVTLSTSADGSQPPAVLHVQQIPNNLGPIQSEALRVAGLEAAASLSQISQGILQAEEGYKTPEPGQVTVNVPVSQAAQARAKWQEAMNSDILIVRCREEVGEMHKNKLGSGGRGKCVKHNGNWYTPSEFEALCGRASSKDWKRSIRYGGRTLQCLIEEGIIMPHALSCTCSTCCDDNTLAGPVRLFVPYKRKKRESSDSPMSKKRLSLAGLPSRSMSVDSACSTPGPLTGDDTVTVDGADLSTLSAITAGSVSVVPVGFQTATTQSMSASDLQKQWWHLEETVNNIITTAQQLRNMLSHVKMQVESVRDNSVAQAKLHAEAEKKEVLAQTRMNSLMQLSRALMEAKQEKETAVAQALIEAKTERLENAADAKQQELLKEIHVIQVEQNNGIDEETEEIVEAVQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZ13</accession>
    <name>A0A6S7FZ13_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Apple domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070757</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000554">
        <property type="protein sequence ID" value="CAB3982913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZ13"/>
    <dbReference type="OrthoDB" id="10637433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Apple" evidence="1">
        <location>
            <begin position="2"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="6617" checksum="66F6F40A0AEA416A" modified="2020-12-02" version="1" fragment="single">MQCVLQDKSCRSANFRKTATSGGEENCELLKTVDSEEDPGSLKRNENFDYYIILSPER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2X9</accession>
    <name>A0A6S7G2X9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PMS1 homolog 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A009553</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA mismatch repair MutL/HexB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000772">
        <property type="protein sequence ID" value="CAB3984683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2X9"/>
    <dbReference type="OrthoDB" id="10263226at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032389">
        <property type="term" value="C:MutLalpha complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16926">
        <property type="entry name" value="HATPase_MutL-MLH-PMS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.565.10:FF:000017">
        <property type="entry name" value="PMS1 homolog 1, mismatch repair system component"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="entry name" value="Histidine kinase-like ATPase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014762">
        <property type="entry name" value="DNA_mismatch_repair_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013507">
        <property type="entry name" value="DNA_mismatch_S5_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002099">
        <property type="entry name" value="MutL/Mlh/PMS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038973">
        <property type="entry name" value="MutL/Mlh/Pms-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00585">
        <property type="entry name" value="mutl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10073">
        <property type="entry name" value="DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10073:SF54">
        <property type="entry name" value="PMS1 PROTEIN HOMOLOG 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01119">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13589">
        <property type="entry name" value="HATPase_c_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01340">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00058">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="375"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="530"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="575"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="668"/>
            <end position="714"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="375"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="398"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="542"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="693"/>
            <end position="706"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3984683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="980" mass="109760" checksum="5CF56F88030590E4" modified="2020-12-02" version="1">MNKLPSESIRLLSSSQVITSPSSVVKELVENAFDAGATTLDVKLEKFGLEKIEVRDNGCGIKESDSEFMAQQYYTSKISKHEDLQMLETYGFRGEALGSLCQVADVCIVTRTVKDPVAVLYHLDHNGKVCSTKPTHDGVGTTVITSNLFKNFPVRKQCFQTTKKGKEELKKIEELLMAYGLINPEVRIILRNNKNVIWQKNKCCDIRTALTDVFGVQLVNQFEYFEYCDNDLHLTVQCFVPKTDSDPLLMWRSSDERSFIFVNKRYVIWKELSQVLKKRCVLKNKETSSGRYPLCLVSVCLSSQDVDANLEPNKTKVIINHKEEVLEIITKELCKIYNANDLPSVNEKTHCMESTGIQSITTIASAGERAHLDQTSELSAQKTSEVVTNQSTSTTSLENERPSDIERSERSASVVEIVVNADCIAQNERSSDIERSARSASAVEMVVNADCIAQNERPSDIERSERSASAVEMVVNGDCIAQNERPSDIERSERRTSAVEIVVVNATSFPGSGNEVVVNADCIAQNESFHQQGNTDGHERSNSNISSEATTNCSSHEENNVVDVLQENDNLITRKDSSVDSNITSDPVCMEKRNNNNDGIAATSEKQDGLQKSSDLDELLENFINDSDIIDDSLLDISLETVAPNQEQWSKGQGLIDKSGKEIEPLQLLRPSVCNKENENSTGTSLSNGKRKNIGDKDISKSDRPSKRNKKHSMISGQSLLTSVLQSPKTSCNTDTSRKTKEVSFSLSRLKQLAAHDRPSATTTKEDIQLIKRLDPWGVWLVHQKRKLFILNPYRIQELLLYKRLLSTHVVPTEKLDKAISLDERVLGGTSRFSLLKKLVIQNNQDEKVRCCDDERLVSNGFEITGRLDRENGENSISLVKMNTTIPYFGIGDLIQVLDFIKDNESRPENGKKSRDLATYRTSKVCTFLKDEVARISRSLPSRMSDTDIAELLKNMNEHLTENESTCVHNRPLLHSLVSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7D9</accession>
    <name>A0A6S7G7D9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tissue factor pathway inhibitor isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A018097</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001445">
        <property type="protein sequence ID" value="CAB3989204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7D9"/>
    <dbReference type="OrthoDB" id="5969998at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00109">
        <property type="entry name" value="Kunitz-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.410.10:FF:000020">
        <property type="entry name" value="Collagen, type VI, alpha 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.410.10:FF:000004">
        <property type="entry name" value="Tissue factor pathway inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.410.10">
        <property type="entry name" value="Pancreatic trypsin inhibitor Kunitz domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002223">
        <property type="entry name" value="Kunitz_BPTI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036880">
        <property type="entry name" value="Kunitz_BPTI_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020901">
        <property type="entry name" value="Prtase_inh_Kunz-CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050098">
        <property type="entry name" value="TFPI/VKTCI-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10083:SF374">
        <property type="entry name" value="BPTI_KUNITZ INHIBITOR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10083">
        <property type="entry name" value="KUNITZ-TYPE PROTEASE INHIBITOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00014">
        <property type="entry name" value="Kunitz_BPTI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00759">
        <property type="entry name" value="BASICPTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00131">
        <property type="entry name" value="KU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57362">
        <property type="entry name" value="BPTI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00280">
        <property type="entry name" value="BPTI_KUNITZ_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50279">
        <property type="entry name" value="BPTI_KUNITZ_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0646">Protease inhibitor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0722">Serine protease inhibitor</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3989204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15744" checksum="2A96BB45D00ABA44" modified="2020-12-02" version="1">MNACSIVILILQCLYATSSAKFIFRPQFCNMKKEAGLCRASVPMYYYNQRQGKCLQFIYGGCGGNLNRFKTIEGCKNTCKDRVCSMKKKPGPCWGYLLRYYYNNSSGKCETFIYGGCQGNRNRFRTMQECQKKCGQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7P9</accession>
    <name>A0A6S7G7P9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GTPase-activating -like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021158</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000816">
        <property type="protein sequence ID" value="CAB3985002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7P9"/>
    <dbReference type="OrthoDB" id="775356at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046580">
        <property type="term" value="P:negative regulation of Ras protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14149:SF17">
        <property type="entry name" value="GTPASE-ACTIVATING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14149">
        <property type="entry name" value="RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143885">
        <property type="entry name" value="RGC domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="13466" checksum="2FCBB6F8C4B06547" modified="2020-12-02" version="1">MRIKDGGLVHKSSHKSPGNVKLSFTQLEKDGIIIESHDVPEKRKSSLYFTIKSPSRGIYKVSLLSKELPGVTIAQAELRLEELLELQYLRHPVLNLNEHVLLDVRRTLVLLQKHFNTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA04</accession>
    <name>A0A6S7GA04_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085845</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001342">
        <property type="protein sequence ID" value="CAB3988555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA04"/>
    <dbReference type="OrthoDB" id="10677807at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17455" checksum="A6E75724140DFF71" modified="2020-12-02" version="1">MDFSFNGLVFLNFHKTHIKLGTNSGYEYIGDEYIGDEYIGDEYIGDQYIGDQYIGNEYIGDEYIGYEYIGDEYIGDEYIGDEYIGDQYIGDQYIGNEYIGDEYIGDEYIGDQYIGDEYIGDEYVGDEYIGDEYIGDEYIGDEYIGDEYIGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDZ4</accession>
    <name>A0A6S7GDZ4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">U6 snRNA-associated Sm-like protein LSm3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">LSM3</name>
        <name evidence="10" type="ORF">PACLA_8A061714</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Binds specifically to the 3'-terminal U-tract of U6 snRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">LSm subunits form a heteromer with a doughnut shape.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the snRNP Sm proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001194">
        <property type="protein sequence ID" value="CAB3987559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDZ4"/>
    <dbReference type="OrthoDB" id="29543at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046540">
        <property type="term" value="C:U4/U6 x U5 tri-snRNP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005688">
        <property type="term" value="C:U6 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01730">
        <property type="entry name" value="LSm3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034105">
        <property type="entry name" value="Lsm3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047575">
        <property type="entry name" value="Sm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040002">
        <property type="entry name" value="Sm-like_LSM3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001163">
        <property type="entry name" value="Sm_dom_euk/arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13110">
        <property type="entry name" value="U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01423">
        <property type="entry name" value="LSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00651">
        <property type="entry name" value="Sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="Sm-like ribonucleoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52002">
        <property type="entry name" value="SM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6 9" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="7 9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 9" id="KW-0747">Spliceosome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU365046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3987559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="10257" checksum="55D68B8C4B3F246B" modified="2020-12-02" version="1">MADESEQQQNNVEEPLDLVRLSIDERIYVKLRNDRELRGRLHAYDQHLNMILGEVEETITTVEIDEETYEELFKVCVKNRVQHIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHZ5</accession>
    <name>A0A6S7GHZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055854</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000767">
        <property type="protein sequence ID" value="CAB3984651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHZ5"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="30425" checksum="0E40F5614C796A9A" modified="2020-12-02" version="1">MINDLELASSSTDHWKYVDDVTISESLKKNEVSVLQSDLNTIERWTVNNNMKLNGKKCKEMILSFVRSENDIPRLLIDGLPLDLVPSFKILGLTMNNKLKWQDNTEALVKKASKRLYIIRVRQRCGLPPNDLLLVYFSMVRSILEYACPVWHTMLPKCLGDKIEKVQKRAFRIIYPTTDYEDALNIAKCKRLVDRRQELCAKTFKKILKPDAHLNHLLPPLREESHELDLRNNSNFTLTKCRTERFKTSFIPAMTANFNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIL7</accession>
    <name>A0A6S7GIL7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Phospholipase A2</fullName>
            <ecNumber evidence="2 6">3.1.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A036658</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15801"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28868"/>
            <dbReference type="ChEBI" id="CHEBI:57643"/>
            <dbReference type="ChEBI" id="CHEBI:58168"/>
            <dbReference type="EC" id="3.1.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">The N-terminal C2 domain associates with lipid membranes upon calcium binding.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.4" evidence="2 6"/>
    <dbReference type="EMBL" id="CACRXK020001150">
        <property type="protein sequence ID" value="CAB3987287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIL7"/>
    <dbReference type="OrthoDB" id="5966938at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047498">
        <property type="term" value="F:calcium-dependent phospholipase A2 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005544">
        <property type="term" value="F:calcium-dependent phospholipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046475">
        <property type="term" value="P:glycerophospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1090.10">
        <property type="entry name" value="Cytosolic phospholipase A2 catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002642">
        <property type="entry name" value="LysoPLipase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10728">
        <property type="entry name" value="CYTOSOLIC PHOSPHOLIPASE A2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10728:SF40">
        <property type="entry name" value="PATATIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01735">
        <property type="entry name" value="PLA2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00022">
        <property type="entry name" value="PLAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="FabD/lysophospholipase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51210">
        <property type="entry name" value="PLA2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="3 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="5 6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3987287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="631" mass="72358" checksum="1763E0F0A95A65DE" modified="2020-12-02" version="1" fragment="single">ILDPPYKYSPIRASGAAGISPDPYVTLRVRTSPNAKQQTSVQHENIDPEWNENFLFYLNPDKKNTLELTIMDDDFGLDKTLGVQEVELDDLPVDKEVRQAVQFGERTLLDIILLVKFNESEHLRISYDLCEDEREFLIKRRDVIFEKMSAMFDDETKPKTVNEVPVIAIMGSGGGYRAACGLSGAFCALQEAGILDCATYVTGLSGSSWYISTLYVQEKWPESSTCEELAAFLRKRFKINVLRHFRPEFKRKVRQKHKIGQPVAFTDIFGMALGDALLQDQDAKLSHQVHKVIHGQSALPVTTGIRVRNDTSAEVCSEWIEFTPFEFGMAKIGVFGKVSEFGGKYYKGRLVKKFEESPLHYLLGIWGSAFSILLNRVVDIEKHMQKLGETARQELERVILKETGRLKSEEDDSDDDDLPDDEIQTSGNWVTEMLKPSNLFTSRRGKAAETFNFCRGMQTKKEEDEEYSKLIGKEKTMCVVTVRDINGDDELPFVELLKAEQWAKGNGLPFPQIQGNPITEDPILRECYVFENKDDVTCPTILHFPIINKTFRSYLKPGVPRVTKEDKDFADFRIFDDPNEPYSSFKFQYDNKTFDRLHELMKFNTRLNIDTIKEKIATYVDYRRNNPEYAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GT08</accession>
    <name>A0A6S7GT08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025176</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002152">
        <property type="protein sequence ID" value="CAB3992926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GT08"/>
    <dbReference type="OrthoDB" id="5988132at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="530"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="530" mass="59583" checksum="CE513D609A34D324" modified="2020-12-02" version="1" fragment="single">SLERSSNNSRSFVSSCFPSTIPSFSASTRGTLCEFRVLSVVYAEIDDDMPSPQHLVLERFAKVNVLKIPLQCLQVDFLHSSVTSEPLSMDWHRNPVLTITRGKLTELLESLKPGFQVTKKTLKLSTHREIKIPNVVRNLIPEQCIQQYEGYCKEVRFQPMSRSTLRRVLKVCSASAHTSLQGLDYISAMGGQAFDDLENVVDMLGDRYGKGLAWAKQTNQKLKDAKRYLKGDYKIHISSNSEVADHCRTYALSFPNDENYTNSCDHEHKGKCDRCSIFPETLADICASLEEVNCPLEEKENMEYVTTQAAQHIRSWKAHILRSINQDAARHDILKVLDSHSALIVLDWAMKFIPRKYRESQRDWFAKRGLPWHIAVLTKKNDDGDLQILTFLHLFKSCSQDSGAVVAIIHDVLSQISTIAPEVHTVYLCQDNAGCYHSALTLLSLPTIERSTGIQIRRIDFSDPQGGKGACDRKAAHIKNHMNKYLNSGNDIENPEQMKAAIESFEGTPGVKVTVCAPPPGRGMGWCESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H007</accession>
    <name>A0A6S7H007_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011879</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001732">
        <property type="protein sequence ID" value="CAB3990837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H007"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8876" checksum="F4AEB5937027712F" modified="2020-12-02" version="1" fragment="single">KERSYRKTKNSYRPLPPERRERRTEQFVPAAAPAPPRRPERRPARWPPLQNAEITSTTRATEARPVEVIVISDDDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4L2</accession>
    <name>A0A6S7H4L2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045256</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003476">
        <property type="protein sequence ID" value="CAB3998946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4L2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043557207" evidence="2">
        <location>
            <begin position="23"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="6532" checksum="47E74BC8ABFA7AF4" modified="2020-12-02" version="1" fragment="single">MKTATLLVFLLLGLACTYAVTAEEEIAEDEPAGMDELIKDDDEETENDEEQDEEKRNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H5L0</accession>
    <name>A0A6S7H5L0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine threonine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A015273</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003255">
        <property type="protein sequence ID" value="CAB3998046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H5L0"/>
    <dbReference type="OrthoDB" id="308449at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051179">
        <property type="entry name" value="WD_repeat_multifunction"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19857:SF21">
        <property type="entry name" value="ANAPHASE-PROMOTING COMPLEX SUBUNIT 4 WD40 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19857">
        <property type="entry name" value="MITOCHONDRIAL DIVISION PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="359" mass="39080" checksum="392205E25A9A6EA4" modified="2020-12-02" version="1">METACDRNMIYTCSRNNDVCQFDLGSLQPSTISQGPNPTCTSMVILPDGEAILSGITTYSVFIYWELSSWREIRYNADHPDDSIVTAIDITSTGKLALSGSSSGTMSLVNLESSNVVQTFANDQSGVGIRLVSVLRNDASFVFVDEANKVEFRNFDDGAGLVLGQPAAKVTSVTPLGLNHILFGCENGELLLLDYFEGINNEYKHQAHNEAVTQVKSHPSNDFLYFASGSASGSVKLWYVTKTVPLVWSQMWSHDNVHPHPITALTFVPHSEDVVSGSYGNEVHRINATGIVRTYRYKSYGITALRVVGNLLVAACIRGFSVVKWSLTEGLVTKSVHGGAGREQVSRINYASDHVASKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEC0</accession>
    <name>A0A6S7HEC0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002361">
        <property type="protein sequence ID" value="CAB3993947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEC0"/>
    <dbReference type="OrthoDB" id="409956at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="259"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="375"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="268"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="299"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="309"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="385"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="643" mass="74209" checksum="863A8251BE384DAA" modified="2020-12-02" version="1">MNQNSTALPKCNNTYASIVKEVLPLPSTRPYNNFSRSRSRSKHLTHVKSRDREPSRIPVKKLVHLMSKNRKRRRVIKRFIKQCIPKSSRFHNLLSTRYRKDIIQQQTNAYMWKFRKPFHAKSKRIRRVVHKQLSMIMHNLAILKNSTKRARTRKHKLFKSYSVKVVGSSKCNMQRIKTSDRNFLFMSGDAELNPGPAVANANNLRIHITESAQNFTETTVVTSIYAQGNVRDIYIGHLDELHYVSATPIEQSASEQIGNQTATDKQKPNTQNSQSNSNKNSVSKRKEYMKEYMKKRRQSNPEKVKESFKTATATYRQSNPEKVKENFKTATATYRQSNPEKVKENFKTATATYRQSNPEKVKETFKTASITYRQSNPEKVKESNKTATATYRQSNPEKVKETFKTASTTYRQLNPEKVKESNKTATATYRQSNPEKVKETFKTASTTYRQLNPEKVKESNKTAIATYRKLNLKKVAELSNIMYKQNYSERVKDTQKRQYIKRKLDCSENGTKMVKYKKVEDNSNDNSCEALQIPGNSDDSRKQIDVTKATELFHKNISVGPEYICTCCDQLWYRSSVTECNVSLYKSCSKEILNICPTGLKSIDNTEWICGTCHSNLKVGKLPSCSKANKMTFPEKPEVLKFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEY9</accession>
    <name>A0A6S7HEY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059551</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004468">
        <property type="protein sequence ID" value="CAB4002849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEY9"/>
    <dbReference type="OrthoDB" id="5954387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31427" checksum="531DA5ED179EEA9E" modified="2020-12-02" version="1" fragment="single">LVQVLHSIGQCLDKNLQSDIIYLDFAKAFDSVDHQILLRKLKSYGVTGRLLDWFRDYLSGRTHRVVVEGVPSSWVPVISGVPQGSILGPILFAVFINDLPEVISNGSSEAMYADDTKLFRNINSTTDGDCLQESLSNLDTWSHDNNIKFNALKCKVLSVTRKKYPATYNYHLGSSSLLRVRKEKDLGIIVTDNLLWNSHIQMITAKANKMLGLLRRTCPLLTETKIRRSLYLSLVKSKLCYGTEIWSPSNVSLKVKIERIQRRATRWILRSRTGEIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFU4</accession>
    <name>A0A6S7HFU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070809</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004312">
        <property type="protein sequence ID" value="CAB4002287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFU4"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19665" checksum="9F443D503E34CC06" modified="2020-12-02" version="1" fragment="single">MTLQEIKDETKKDKTLQGLAKIIREQLWDSKPKWHELNTDNDDIRKYINVRDELTINDEADIVLRGSRIVIPRSLQHRAISIAHEGHQGLVKTKQLIREKIWFPGIDKAVRDMIGSCIACQANSHPNPPTPLKMNDLPPEPWHAIHLDFCGPFPTVEYVLVAIDAYSRFPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMD7</accession>
    <name>A0A6S7HMD7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037319</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005509">
        <property type="protein sequence ID" value="CAB4006444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMD7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14015" checksum="7DF8BF9605B7AC5B" modified="2020-12-02" version="1" fragment="single">MSKAITQNRNESEFNGKRDKISRSTEELNSIEGDLNLTESEFNQNNSLVNLTKPSSDSELIESSILMIANANLKWQKNFEELCLAVDRLQLQSSKGWTSPGGYCKLFESGEVSIRWYSNSKTLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQ75</accession>
    <name>A0A6S7HQ75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022116</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006055">
        <property type="protein sequence ID" value="CAB4008205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQ75"/>
    <dbReference type="OrthoDB" id="330047at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027197">
        <property type="entry name" value="SLC43A3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20765:SF1">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOBASE TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20765">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="25014" checksum="09AC9DF78D9ED0E1" modified="2020-12-02" version="1" fragment="single">RISLFSIIRGPKFIIHTCFVSITTLRSFLFTGTINTLLKRLTDNERKVDFYLTILGLIQFTGIVLAFVPGFLLDWSPADRHRNFSIIISFVLTGLISILVTVGLLIPVLKLQIFSFLLYAFLRSFLYSSHGSFIMKEFPLYHAGALNGLSLLVSAVVSLFQIPMFALLDGPYNGDPTWVNVGLLVVQILVMVHPVYLWKCSKNEDKSSNNTLKIMDYGDTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVB2</accession>
    <name>A0A6S7HVB2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042674</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006135">
        <property type="protein sequence ID" value="CAB4008479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVB2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="27001" checksum="C4538E2019048A53" modified="2020-12-02" version="1">MSRGSRSEDGEYSFQISSPQKQQQPLFIPLKNVTETGKLFDIVSVKGKITKKGKTKVVGRNQLNLAETMLCDGSSIDENEIETTESNPAVKVTCMYNNKKIIVRKSNTEDSGKSSGFRPGDSTVMQLVFVVNKIYQALEIGNEVCAVFLDISKAFDKVWHKGLLAKLKSVGINGPLLQWFESYLTERYQSVTIEGKSSHWAHIEAKVPQGSVLGPLLFLIYINDIADVSSTGFLFADEVISPID</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICC6</accession>
    <name>A0A6S7ICC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009182">
        <property type="protein sequence ID" value="CAB4016595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICC6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="91" mass="10087" checksum="10296EDB5477679A" modified="2020-12-02" version="1">MASGNEVRSFIRGINIVRNKAVLSSLQSCKLKENLSVLEDKIAKVSSGSQLWEHLRGFRAILDCLLANVACNDGSTRVKCYKNALCFKQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ID04</accession>
    <name>A0A6S7ID04_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046033</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009286">
        <property type="protein sequence ID" value="CAB4016855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ID04"/>
    <dbReference type="OrthoDB" id="5984394at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00057">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543:SF335">
        <property type="entry name" value="EGF-LIKE REPEAT AND DISCOIDIN I-LIKE DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00231">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01285">
        <property type="entry name" value="FA58C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24719" checksum="8DBC4A8462632802" modified="2020-12-02" version="1" fragment="single">TLSLNRLTLADRTKILDSQFSAYSYKSGFEPKKVRLAGAGWCTAAADPSAEYLQIDLQNFYKIEIIVTKGTSSSWVKSYYLDYSFNGADWTQAKIRDERRTLSGNFDSSTPQYHFFEKPIEARLLKIIPEEWEGDFLCLRFDFLGCQFDPCESCDSAVSYCNETTSWTCKCSEGLEMDDGVCKDKCRSCNASTYCDKTTDWNCTCIEGYEMDDGQCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IH43</accession>
    <name>A0A6S7IH43_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transmembrane protein 107</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A036250</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009335">
        <property type="protein sequence ID" value="CAB4016957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IH43"/>
    <dbReference type="OrthoDB" id="2114471at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036038">
        <property type="term" value="C:MKS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905515">
        <property type="term" value="P:non-motile cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904491">
        <property type="term" value="P:protein localization to ciliary transition zone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029248">
        <property type="entry name" value="TMEM107"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34341">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 107"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34341:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 107"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14995">
        <property type="entry name" value="TMEM107"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0970">Cilium biogenesis/degradation</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4016957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15355" checksum="675169BC87589796" modified="2020-12-02" version="1">MSVGSLIPVRFLTLTAHLVITIVIFWSKDANLLECLPLSYSQTEYDEKDTNLVIGLSLMLAFLTIELLSFLGGVSMFNASASMFSIAAHGIGTISLSFFIFDSWDCDRFWYIFGFCSAFPVFIEIIVMIAVLGLKRGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJ08</accession>
    <name>A0A6S7IJ08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110236956</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044944</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004494">
        <property type="protein sequence ID" value="CAB4002948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJ08"/>
    <dbReference type="OrthoDB" id="413313at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd16021">
        <property type="entry name" value="ALP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.720.10:FF:000017">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004245">
        <property type="entry name" value="DUF229"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974">
        <property type="entry name" value="FI08016P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974:SF1">
        <property type="entry name" value="FI08016P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02995">
        <property type="entry name" value="DUF229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="644" mass="74496" checksum="D9A53A5C7E29C77F" modified="2020-12-02" version="1">MRLTRQRTFVLLLCFGLAFLGVYFYLLSRDQNCTSGLECFIGIQQTDTNRALMCVLPRLDPFDRSISHLITNYSDDITDVCGKSSKVFQLVDGRIQIRDFSLLENISEKSAKYETVIRPKGDDHRIMYGNMVFISQNDQKINNDFLKVSYKLKNGSRKVEMFAQIVEKQSVLKRKLTNARPRPNVVLMGFDSTSNANFKRKLGRSFRYLVEKLDAFVFNGYTIIGDGTTPALTAILTGNLLSTMVSNNHTDLNSWPWIMKNYKRKGYVTLYAEDDPQVACFNKIGSFNNEPADHYIRPFWLSVERHGLDGRRRNKSASLHRLCLNNEPLHNITLNYVKDFLAAYDGMPKFAFPFFSYLPHGTGEKLSYADKDLLLFLKSYEKYRDNTILIIFGDHGARVGSVRNTIQGTYEEHLPWLSIVLPPWFEEKYPVFTKNLKVNQERVISPFDLHYTLHQILNLDRKPAAGTSLMSELNPQRTCSEAGVTDEHWCPCLRWQAEDINSIPVKRAAQLLVKHINKMISKKRIFINLCFTVYLVEIILAARAEALRESENGDIVYYQVTIATKPGDGLFQATFRLYPDSKMVMTSHISRTSMYRRNPWCLGRNYHYMRRFCTCKIPHRNDARKRMVENMDVSKLMKMSLNNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKH3</accession>
    <name>A0A6S7IKH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030028</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005514">
        <property type="protein sequence ID" value="CAB4006461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKH3"/>
    <dbReference type="OrthoDB" id="5983996at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="195"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="223"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="27316" checksum="487FEB71325187D7" modified="2020-12-02" version="1">MALHSTDRKSGDTWRSNGIEFVTVTPLWPQGNSEAESFMKPLLKSILTARTEGRNWKKELFTFLLNYRATPHSTTKVAPAELLFNRTIRTKLPQQYTSSKPIDKHIMAKENDHNSKSQMKRYTDQARHTKKTLINVGDLVIYKQQKKNKFSTKFNPAPYKVIKVHGATITAQRHSHQITRNISYFKRLNLGEKERQYHLDDQPSDEEEDEIVRNEQDQENEEDARRYAARDRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKZ9</accession>
    <name>A0A6S7IKZ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized RNA-binding -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017001</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009816">
        <property type="protein sequence ID" value="CAB4018023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKZ9"/>
    <dbReference type="OrthoDB" id="360390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="23020" checksum="6C7431C84D4DBC29" modified="2020-12-02" version="1">MSTEKMENIEPQKIFVKYLPKNITVDEIKAFFSVCGIVLKVYLKSLKSPDQGKPTYICAFITYGTQAGADRAVSELNHKEMKKGHISQKLSVMYSLNYEGRKELQVDNSKEKKVPNAKEYQELWLKCSSNAEKINQIYNKPEEQKQIEELRTKKCELQAKQDELKKTNNKLKDEINLLRLEVQIKNMDIKNTKLKEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMH9</accession>
    <name>A0A6S7IMH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon 412, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010229">
        <property type="protein sequence ID" value="CAB4018947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMH9"/>
    <dbReference type="OrthoDB" id="5846951at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13975">
        <property type="entry name" value="gag-asp_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="341"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="509" mass="56537" checksum="76985EEF5DDB88D7" modified="2020-12-02" version="1" fragment="single">GWEQSSAKINSFSAAKKFITLTGTVVQSGSREFKHEFICDSGAEVSVIPTALAQEHYMKIQPTTRHVEMANGTHAECRGVVQTSVTVGTNSCILSFFVVSGVQNGILGLDSLGKLGVSLNTGKKLATIDGAQPVLQPEVDTPQEMLKCCYIRVAESRDIKPFEEIFIWGKLENKNEKFTRDSYIEGTEHFQQRTGLLTAPIKISAEMMNDESKIPICVLNTTDKSIRVYREQTAATIQELPSTQNIGHISESNMGGNNPSSQYDPVPEVSVGEQLTTQQRENLEVLIRKNTQVFDYPGNSGFTTTIEHTIPTAVSDPIVCHPRRHNLGLTQKNNEAVGNHVKSGHLTPSKSPWAFPIVPVLKPDKTVRLCVDYRPLNKITQNEPYPTGNLQEVLDNLSGANYFSVIDLAQGYLQVPLAKEDRPKTAFRSPTGVWEWTRMPYGLKGSPATFSRLMQKVLGHIPPHRLALYMDDICIISKTFEEHLVNLQGVFDALRQHGLRVKLRNVLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IML0</accession>
    <name>A0A6S7IML0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044501</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009772">
        <property type="protein sequence ID" value="CAB4017930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IML0"/>
    <dbReference type="OrthoDB" id="10047254at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="68"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="361"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="372"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="427" mass="49125" checksum="FBB2B36AE8BAFED0" modified="2020-12-02" version="1">MRADLLRLSHNDPSSGQMGINRCVERLQPWYYWPGMTSEVHLWVAECDVCNQRKSSSASHRTPMENIRVSQPMKLWAKDILGPLPITARGHQYVLVMSDHFTKWVEAVPMADQKAETVARAFIDNVVSRHGVPVKLLTDQGRNFESELMKEVFKLLGVHKLRTSPYHPQTDGQVERFNRTLKAIISSYVNGHHNDWDLHLPLALFAYRTSVHSSTRVSPFKAAYGRDATTPLVLLGSTEKPKTRLIADYCAELEFTLKEVHATVAEEIKKAQTQQKQNYDARNTAHQTEILRPGDIVWLHSTVIPKGRSRKFHKPWIGPYVILRCQGRLNYVIRPKSGKGRSSCVHRNRLKLVQNQTDDINEQDMPFPLSTKSEKTQERRVSESPIVHKEVEATNMVPLRRSTRQRRPPDRYQDFNLDELEIEDALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZ13</accession>
    <name>A0A6S7IZ13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A053102</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006823">
        <property type="protein sequence ID" value="CAB4010542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF23">
        <property type="entry name" value="ZINC FINGER PROTEIN 729-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="8"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="1699"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="145"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="188"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="339"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="381"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="392"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="507"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="570"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="633"/>
            <end position="743"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="751"/>
            <end position="857"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="866"/>
            <end position="1142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="1146"/>
            <end position="1160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1161"/>
            <end position="1233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1241"/>
            <end position="1346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1354"/>
            <end position="1432"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1445"/>
            <end position="1508"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1516"/>
            <end position="1568"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1576"/>
            <end position="1699"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1699" mass="183023" checksum="FB2AF8182B954CB4" modified="2020-12-02" version="1" fragment="single">MTTNKDEVPDCEDKVPDADDKVPDAEDKVPDAEDKVADAEDKVPDSEDKVPTVRKRFLTDKVADGEDKVPDGEDKVADAEHKAPDGEDKVPDGPDCEDKVPDGEDRVPDADDQFPDGEDKVPDGEDKVPDCEDKVPDGEDQVPDSEDKVHDGSCGEDKVHDAKNKVPDSEDKVADGDDKVPDGQNKVPDAEDKVPDAEDKVPDCEDKVPDAEDKVPGADDKVPDCEDKVPDGEDKVSDADDKVPDGEDKVPDGEDKVPDCEDKFPDADDKVPDPDAEGKVPDAEDKVPDSEDKVPDADDKVPDAEDKVPDAEEKVPDSEEKVPDGKKKVPDGEDEVPDGEAKVPDGEDKVPDAENKVPDSEDKVPDGDDKVPDGEDKVPDSEDNVPDDEDKVPDCEDKVPDCADKVSDAKDKVRDDEDKARGAEDKDPDCEDKVPDGEDKVPDGGDKVPDGEYKVPDGEDKVPDAENKVPDSEDKVPDGDDKVPDGEGKVRDAENKVSDSEDNVPDGEDKVPDCEDKVPDCENKVPDAEDKVPDGDDKVPDGEDKVPDGEDKVPDAEDKVADGEDNVPDSEDKVSDSEDKVPDCEDKVPDCEDKVPDGEEKVPDGGDKVPHADDKVPDAEGKVPDCEDNVPDCEDKLSDCEDKVPDADSDVKDPDAEDKVPDAEDKFPDGNNKVRDGEDKVPDGEDKVPDGEDKVPDAENKVPDSEDKVPDGDDKVPDCENKVPYSEDKVPDGDDKVPDAEDKVSDDEDKVPDAKDKVPDATDKVPDAENKVPHADDKVPDSEDKVPDCEDKVPDCEDKVTYADDKVPDAEDNVPDGHEKVPDSEDKVADGEEKVPDGEDKVPDEEKVPDAEDKVPDSENNFLTDKVSDAEDKVSDAEDKDPGAEDKLPDCENKVLDGEDKGPDGDDKFPDGDDKVPDGEDKVPDAEDKVLDSEDKVPDGKKKVPHGEDKAPDGEGKVPYGEDKVPDAENKVPGSEDKVPDGEDKVSDGEDKVPDAENKVSDAEDKVPDAECKVPDSEDKVPVGEGKVPDGEDKVSDAEDKVSDAEDKVSGTENKVPDSEDKVPDGEDKVSDGEDKVPDAEDKVSDAEDKVPGGEDKVPDAKNKVHDAEDKVPDAEDKVPDSEDKVPDCEGKVPDCEDKVTYADDNVPDAEDKVPDDDEKVPDSEDKVADGEEKVPDGEDKVPHAEEKVPDAEDKVPDSENKFPDVKKKVPDGEDKVPDGEDKVPDGEDKVPDAENSVPDSEDKVPDGDDKVPDGDDKVPEAENKVPDSEEKVPDGENKAPDCEDKVSDAEDKVSDAEDKDPGAEDKLPDCENKVPDGEDKGPDGDDKVPDGDDKVPDGEDKVPDAEDKDPDSEDKVPDGKKKVPHGEDKVPDGEDKVPYGEDKVPDAENKVPGSEDKVPDGEDKVSNCEDKVPDAENKVSDAEDKVSDAEYKVPGAEDEDPDCEDKVPDGEDKVPDGGDKVPDSDDKVPDAEDKVPDCQDKVLDCEEKLPDCEDKVPDGDADDKVLDAEDNVPDAEDKVPDSEDKIPDGEDKVPDGEDKVPDAENKVPDSEGKVPDGEDKVSDGEDKVPDDEDKVSDAEDKVSDCEDKVLDCEEKLPDCEDKVPDGDADDKVLDAEDKVPDAEDKVPDGEDKVPDGEDKVPDGEDKVPDAENKVPESENKVPDGEDKVPDGEDKVPDAENKVPDSEDKVPDGEDKVSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J177</accession>
    <name>A0A6S7J177_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">carbonyl reductase (NADPH)</fullName>
            <ecNumber evidence="4">1.1.1.184</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A052245</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.184" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020007070">
        <property type="protein sequence ID" value="CAB4011212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J177"/>
    <dbReference type="OrthoDB" id="7289984at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004090">
        <property type="term" value="F:carbonyl reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd05324">
        <property type="entry name" value="carb_red_PTCR-like_SDR_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045313">
        <property type="entry name" value="CBR1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43963:SF4">
        <property type="entry name" value="CARBONYL REDUCTASE (NADPH)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43963">
        <property type="entry name" value="CARBONYL REDUCTASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00026118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4011212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="31324" checksum="EB2E479A8D0BAC5F" modified="2020-12-02" version="1">MSTKRIAVVTGGNKGIGYEIVKYLCKKYAGIVYLTARNEGRGLNACEKLILEGVKNPPKFHQLDIADDESIEKFRDYLKETHNGLDVLVNNAAIAYHPNSHVSFAEQAEKTMRINFTGTLNVCKALFPLLRPHARVVHVSSGSGRLGKITNESLKMELTMPDLTESELVDLMQQFLDATKVGDHESKGWPNSTQPYADYAVSKIGLNILTEIQARDNPYDEDKDTLINCCCPGPCLTDMAGPHATKTATEGAETPVYLVLIPSGSEQPHGKYYTELKEASWKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J6F7</accession>
    <name>A0A6S7J6F7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BTB POZ domain-containing 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006145">
        <property type="protein sequence ID" value="CAB4008508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J6F7"/>
    <dbReference type="OrthoDB" id="624345at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="311"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="330" mass="38071" checksum="8F95D048656DB285" modified="2020-12-02" version="1" fragment="single">MAFAQYNFSENDVDSCMEPNQYNSNLTSKPMPPQSDIEKQSAESVDWQSTKKSVSERNRHMFNNSDMSDISFTCEGSGKKLYAHKYVLGTSSAVFRAMFYGDLAEKNSIVHLSDTDEKSLEEFLRFLYTDECNLTTDNAISVMYLSKKYIVPSLTEKCVNNLASSINAENVMSILEQATHFDESKLEMSCWKFIESNTKQAVASTDFNNISQKTLASLLRRNDLNIVEVELFRAVLKWSDFQCSKKDMESDFQCSKKDMESDFQCSKKDMESDFQCSKKDMESDFRCSKKDMESDFQCSEKDMESDFRCSKKDMESDFQCSKKDMESDFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9C7</accession>
    <name>A0A6S7J9C7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Soluble calcium-activated nucleotidase 1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A061716</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the apyrase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014701">
        <property type="protein sequence ID" value="CAB4027267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9C7"/>
    <dbReference type="OrthoDB" id="25028at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004382">
        <property type="term" value="F:GDP phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045134">
        <property type="term" value="F:UDP phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030166">
        <property type="term" value="P:proteoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.120.10.100:FF:000001">
        <property type="entry name" value="Soluble calcium-activated nucleotidase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.100">
        <property type="entry name" value="Apyrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009283">
        <property type="entry name" value="Apyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036258">
        <property type="entry name" value="Apyrase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13023">
        <property type="entry name" value="APYRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13023:SF3">
        <property type="entry name" value="SOLUBLE CALCIUM-ACTIVATED NUCLEOTIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06079">
        <property type="entry name" value="Apyrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101887">
        <property type="entry name" value="Apyrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0106">Calcium</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="335"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="387"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR609283-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4027267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="392" mass="43772" checksum="63F97A526026CEA0" modified="2020-12-02" version="1">MYNKLSKPNHSPESGNIIISFRNKVRRMPMDRKSKVCVLCGVLMTSLFYVAYALHVNFGGYSLTRTRDIATTLEQSCPLTKPVKTKDGAISYRIGIISDLDENSKHPNKLNTWVSYFKRGKLVLNANGGANKVSVLWDDNNVELTSSLAQGGRGMELSELVCFDGKILSLDDRTGVVYQIFDRHVSPWVIMADGDGQEAKGFKGEWSTVKDGQLYIGGLGKEWTSKTGEILNFNPQYVKIVGPSGAMTHVSWVDKYRKLLKTAGIEPPGYLIHESAVWSSVNKKWFFLPRRASKLKYDDKEDERHGTNMLLSCSEDFSGCDRTLIGPLNTTHGFSSFKFIPGTNDQEIVALKTQEVGGQIASYIMAFDLSGRILMSEQKIPGSYKFEGIEFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JF35</accession>
    <name>A0A6S7JF35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Xenotropic and polytropic retrovirus receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A077300</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SYG1 (TC 2.A.94) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017182">
        <property type="protein sequence ID" value="CAB4030856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JF35"/>
    <dbReference type="OrthoDB" id="9970435at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000822">
        <property type="term" value="F:inositol hexakisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016036">
        <property type="term" value="P:cellular response to phosphate starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14477">
        <property type="entry name" value="SPX_XPR1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004342">
        <property type="entry name" value="EXS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004331">
        <property type="entry name" value="SPX_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10783:SF103">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 53 MEMBER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10783">
        <property type="entry name" value="XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03124">
        <property type="entry name" value="EXS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03105">
        <property type="entry name" value="SPX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51382">
        <property type="entry name" value="SPX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="231"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="272"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="313"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="339"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="369"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="409"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="SPX" evidence="7">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="583"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4030856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="583" mass="67496" checksum="7A4E05C3FE28A875" modified="2020-12-02" version="1" fragment="single">SLTEGSSLISSWKVDRIINEKMKEILYDALEEMRSDEEADPAIKEQYFAQFEERFFMFCDKELEKVNTFFAEKIAEAQRKFTTLKNEAECGGYLSAKSSLNQIRRGAVSGQILDPNVKKLLAKTHRKAKNLKLAFSEFYLSLVLLQNFQQLNFTGFRKILKKHDKLFETQNGLNFKKKVQKSPFFINKGVDTLISETENIFINELEEGDRSKAMNRLRVPPLTEREKRSWVIFRCGFFLGMFLVLLVIVIIGLEVKGYGNEWLPILRMYRGVFLLVMILFLVAINTCGWRAAGVNHVLIFELNPRTHLTYQQVLEASACLSVIWCLSFIAYIYHDDIGIYPFTPPLIMAIIMIVFTFNPFKCGFHGARWWLLKIVYRVITAPFHAVGFADFWLADQMNSLNTMFLDTEYSLCYLVYGWYSSGVFMFARRKSKVDWKSVDDRDGLDHCPWLQSSCGGGQISYVASISDLLDFRKFSRPPASVLENFAVTEVYVKRARKCLAKGMRSNWTTDLDIETLESRRSWATLSEVQSVIPFHVERYESVLENSAYMFLKKIFKTAKKPLLTPTCESFQRAGVRSHRKLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JN08</accession>
    <name>A0A6S7JN08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017652">
        <property type="protein sequence ID" value="CAB4031464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JN08"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="16975" checksum="7CABEA4B029EE640" modified="2020-12-02" version="1" fragment="single">PAEKNVLGPVEVKSTDDEEESVCKTSPPIQFPVSPTPPSQSPASSPLKSPTQSSGLSTSSLHECPLCEKFFPRETIEFHASTCVGATTRETIVLTSPTRESDAEVVEIQQVHSPVNTAYDVVPNESVPCPFCRCWFPSSRINVHANICVESGPLMSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQ45</accession>
    <name>A0A6S7JQ45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Octopamine receptor beta-3R-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A032130</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019003">
        <property type="protein sequence ID" value="CAB4033168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQ45"/>
    <dbReference type="OrthoDB" id="5957871at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004993">
        <property type="term" value="F:G protein-coupled serotonin receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071880">
        <property type="term" value="P:adenylate cyclase-activating adrenergic receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043410">
        <property type="term" value="P:positive regulation of MAPK cascade"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24248">
        <property type="entry name" value="ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24248:SF199">
        <property type="entry name" value="IP13425P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4033168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="392" mass="44988" checksum="3346123375CA542D" modified="2020-12-02" version="1" fragment="single">LRVAKHLDEQVRFALEIFKRKLMDASNITTTPSFTPSTLYPTLNTTFNPNTTLNESGTSPTAPNIIFLTYVGILVCIITFALLGNLVVIIVFLFDRKLRVSSNYYIFSLAVADVITAALVMTFEVDQWLNNLKWRYSRVLCKAWTTAYLFTVPVSILTTCLSSIDRWYAISRPLQYRTNRNGLKHKALVAIILIWIYSILFALLPEFGWNPPGASHGVKEDSPYCFFDIYIEYSILSSVLHFILPSLVTAFFYYNMFKAMKTHTMHRRRMSSGSDCSHARGPSQTKRTTNQRKEQRINFRHNVSLAKSYALIGSLLILTWCPHSIISIMQNTCYYNQSRSYGCGNIMDISDDTVTSFLLLGYFNSALNPIVYVLRFRQFRLTLMECVTCKKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JR77</accession>
    <name>A0A6S7JR77_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like RNase H domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054459</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019770">
        <property type="protein sequence ID" value="CAB4034047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JR77"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="21"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="402" mass="45506" checksum="A818C844A6E70D7F" modified="2020-12-02" version="1" fragment="single">MNSSVSLILVMILVAALDSPTTIASHVLAFMVRGVASDLKYILGYFSTENVTVYQLMPLFWKAVSILELGCNLWVRAAVSDGASPNTKFYELHAGLVGEEYKVDFVYRTVDLFAPTRFIYFFSDAPHLLKTVRTGPASAKLTIDHINLTSFSKMTSRLEYINSLLRLQEDIQGLIDAGPGNVGQVMSKKDVYDKTLCEFVTVHEEYLEIVTAEDEKRRASLTYKEQMAKKVQLDGVVASWCKKPRLYGSGKGRSQISSLTSGTSSASALSKKKEKMALAQLKVNQLMQRHEMKRRMEELRYQEELMEAQMEEEQAKVSFNIYNELANKHIGEYDNNMPGFNGNEVQGESDLSPLTETNAYELESEFYTRYPPDLPSIHELSRTTQHLEQHEVYRPIVLEAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSD5</accession>
    <name>A0A6S7JSD5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SEA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A022759</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021259">
        <property type="protein sequence ID" value="CAB4035666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSD5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000082">
        <property type="entry name" value="SEA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036364">
        <property type="entry name" value="SEA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01390">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82671">
        <property type="entry name" value="SEA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="SEA" evidence="3">
        <location>
            <begin position="7"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="151"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="156"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4035666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19187" checksum="01AD7729176A0731" modified="2020-12-02" version="1" fragment="single">PSSDNIFQVSFVLSNTTWNDTYSNSSHPDHEALKDLILAELSKVYQGDATLKNIVLDKFEPSGENVKAVLKMTFDSSNNNPGAKLKDSFSNGKLGSIGVDKDSLSWINSYTPSESESEEDTELVVGTVFGVFFGLGSILLGVAWLKNRQSRRKVGSSHTSVNEDPSAQPEGVEETPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVF3</accession>
    <name>A0A6S7JVF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040467</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010780">
        <property type="protein sequence ID" value="CAB4020091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVF3"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14719" checksum="3E6347DF6A0D03A1" modified="2020-12-02" version="1" fragment="single">MDRKNSTQHHDNQTKQQTDHRNHPNVVIVGDSMIKHIEPAKLRQGLKSGVTFRTFAGAKTEDMKYYLQPTLKAKPSHLILHVGTNDLSGKSPEGIAQNISELGKAATEQVPGLKLSISEIIMRSDHEDNDQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JWT4</accession>
    <name>A0A6S7JWT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transposon Ty3-I Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A081239</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021160">
        <property type="protein sequence ID" value="CAB4035558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JWT4"/>
    <dbReference type="OrthoDB" id="10067429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000493">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="952"/>
            <end position="1043"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="967"/>
            <end position="977"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="981"/>
            <end position="995"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="1031"/>
            <end position="1043"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4035558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1043" mass="117982" checksum="31B6306C47ED0780" modified="2020-12-02" version="1" fragment="single">KPPPRPTQPPFPANNANRAHLQQWLLDYYAASTFNTCEHQPLPLMHGPPMRLMVNPDATPVAHHTPIPVPLHWQEDVKAGLDRDVALGVLEPVPIGEPVTWCHRMVVCAKKNGQPRRTVDLQALNLHATRETHHTQSPFHQARSVPTNKKKTIFDCWNGYHSVAIHPDDRHLTTFITPWGRFRYKTAPQGYIASGDGFSRRFDEIVSDIPDKTKYIDDALLWADNIEGSFFQAVDWLDTCGHNGIILNPEKFVFGQDTVEFAGFAITPNHVRPCQKYLAAILNFPRPANVTDMRSWFGLINQVSYAFAAADRMLPFRESLKPGSQFTWTEELNQLFEESKKVIVNEIEHGVQIFDKSKPTCLATDWSKDGIGFWLFQKHCDCPAERPFCCKTGWKVTLVGSRFTHTAESRYAPIEGEALAVVDALDKARFFVLGCDNLIIAVDHKPLLKVFGDRCLEDISNIRLRNLKEKTLRYRFRMVHIPGIKHKAADALSRHPSGTTNPEAMPIPDDVADINANSPPPMLSNPVLAGIRTLEPDTYSITATIEKQLLSSAIKSTHSMAVTWDRVKTATASDTTMEKLLSTITAGFPEFRHELPPDLQEFFQFREHLYAIDGVILYKARIVIPSSLRSHILSILHSAHQGITSMTSRAEATVFWPGITPAIRAIRESCQHCNRMAPSHPNPPPTPITPPSYPFQLLCADYFHYQGVNYLVVIDRYSNWPIIERCKDGATGLIHCLRRIFVTFGIPDELATDGGPEFTATSTQDFLTSWGVHHRLSSVAYPHSNCRAEVGVKTVKRLITNNTGPNGTLDTDTLQIAILQYRNTPDPTTKLSPAECIFGRPIKDFIPIAPGRYQPHPTWKDTLMTREQALRNRHMRTTEWLSEHTRRLTPLKVGDQVRIQNQIGPHPKKWDKTGLVIEVRQFDQYAIRVDGSGRVTLRNRKFLRKFIPVQQRQPRHTITEDLRYLPTPQTKAPQPTLHTPPTEPPNIPSPTPPTPQSTSMPSTPNHITLEQTPRKPENPSTPKKLPLALRRLQDYNKKGLQEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXT5</accession>
    <name>A0A6S7JXT5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013577</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008349">
        <property type="protein sequence ID" value="CAB4014548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXT5"/>
    <dbReference type="OrthoDB" id="8196283at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4014548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="402" mass="45595" checksum="60AFB31777BE1ADE" modified="2020-12-02" version="1">MQNESEAEGTNRLQKRKQDQATETVDERARILEILRAVFHTASSNENDQESNEQLSMSVDATVDISVPEADEDSESVHEAEGPEVSRNEYLHEGGWQNVDNPLHELEFVQNEMHSFHLDQEHLEHRQCIMCKEAWPTRQNLASEVYICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENELSVHVENEGPPQDPVMSANASVEELVLGSGGTSFIPMRQRQRKEGAAIQDAVNEVDPLDWPSTEGNLIMEVCFSPSVSLLGVKHETTTSAVVTSKCLLASTSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZY8</accession>
    <name>A0A6S7JZY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042776</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021364">
        <property type="protein sequence ID" value="CAB4035784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZY8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7038" checksum="1765EAB5B0F3A94B" modified="2020-12-02" version="1" fragment="single">MATLSSSGKEIFPQTVRSIEGYFKQKEIQFQHGHTTIIAKCPFCATILSRESRTSAIENQGSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K190</accession>
    <name>A0A6S7K190_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Signal recognition particle receptor beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A085979</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023712">
        <property type="protein sequence ID" value="CAB4038017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K190"/>
    <dbReference type="OrthoDB" id="8954335at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00882">
        <property type="entry name" value="Ras_like_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G" evidence="2">
        <location>
            <begin position="10"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="358"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="358"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4038017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="437" mass="48488" checksum="B6309B3E7BCC0216" modified="2020-12-02" version="1">MANLQNAPYVVLLGDVGTGKSTLLEKMTGETGRSSDSFTSYTRSSEVFWVPDGSLIVADTPGSNALKEKLDHNIEIATALNFMHVSRIFIVVKAEARIDSVISNVRTYADCFVELPMDVVAVLVTHMDTPGLKWMEKDFTPEINEELGIDTVIFSSIDTAGETLVCDILKTCTEKYDLTVDNENLFKLFKIHNNHRKILKSTSDEVKNFKAKKQAFDEARKAFSGKDLVDLVFEFQAYMTEEIVEAQKRMSDVNNFTFDGDGAANEAGHVANMVNQLRVVLYDIRTECTGFQNEHGVSELRKCPHCGLIWTRVEGCDGSTECGRQPSSVNDIRDSSFAVLATFAFSWVGNKLNIAKSGDKSVKSEKSTKPNKGCGKSITWREMPPVDIPPEFRETVKVCTSDIKMLPTAAEGFKEKLTNKLDASKKKMKLSGRPSPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K269</accession>
    <name>A0A6S7K269_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000252</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025422">
        <property type="protein sequence ID" value="CAB4039466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K269"/>
    <dbReference type="OrthoDB" id="5988317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="379" mass="42681" checksum="78B275AFD1ABCEB9" modified="2020-12-02" version="1" fragment="single">MARRKAKLYSRFDVATYMQEKKRLKKETALAHKTLAKKKSKLDRLIYRIEEVSEETQIVSGDPQPELLTPPAKKKKTTFLSEKNAKARCGNPTVLSSNDKPGLSAQAMARRRTETFDAASKIHGATPENPLPTSVGLLDTVEKKCSQEVLVKFMSTSKKFKNVFSVIFKTASDNFEQSQANKLRSIAVYYSKGVMGKRKYRSTYRCLSMMRNPNGKSKTTRIKVLSNPLPRLLPYNKLASMLNEIEIGTLYSVRDTLCDDLECGEKVDGCYRKLIEFLPRLALFYLSALPASDIDWFNEPYTFQVAIGGDGAPFGKFDQSCAWLVSFLNIGHKILSSEENFLIFGSNCSETSPAVAKYISMITKEIEDIEKASFNINNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K5L3</accession>
    <name>A0A6S7K5L3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045075</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024592">
        <property type="protein sequence ID" value="CAB4038798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K5L3"/>
    <dbReference type="OrthoDB" id="6134459at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.410.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001212">
        <property type="entry name" value="Somatomedin_B_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01033">
        <property type="entry name" value="Somatomedin_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00524">
        <property type="entry name" value="SMB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50958">
        <property type="entry name" value="SMB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14477" checksum="3FDA47C085D8FF43" modified="2020-12-02" version="1" fragment="single">CQSVSTSERNEGKSQIVYNTHLVQREQQFVKKQGSLTLPDDIKTSLKLNRYRVRRNTKHEEQNETISGHCETPELSCNGCCENDSNNCSHIVKICYCDPQCAFYNDCCVDYYKYCRKKKRSSFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC88</accession>
    <name>A0A6S7KC88_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Apple domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032169</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013824">
        <property type="protein sequence ID" value="CAB4025783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC88"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Apple" evidence="1">
        <location>
            <begin position="9"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="79" mass="9020" checksum="68D07285D4781A5D" modified="2020-12-02" version="1" fragment="single">VPSLKTNIIAESRETSYESCGLKCAENRFCVAVNYKKKAAWNESNCQLTNSTARKFVNISSEKERVWTFIKVNVDRSQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMW6</accession>
    <name>A0A6S7KMW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transposon Ty3-I Gag-Pol</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A040928</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016192">
        <property type="protein sequence ID" value="CAB4029473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMW6"/>
    <dbReference type="OrthoDB" id="5986544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="5">
        <location>
            <begin position="257"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4029473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="425" mass="48079" checksum="456A824046E3CF20" modified="2020-12-02" version="1">MYSTLVVKSLMNLSIPRYIQRYTTIYNDIQRYRVEKTCKSYEFGDLQDSQVRDGIVCGIQSAEVKARLLRGPAQGISIGYEDHELRNCPANGQMCHECQGRNHFARVCRSSGKPAHVVEESSDSEKEMYIVTVERRIRRMDGIRNVVVKVGKRDIALKLDTGAQCNVIPYETYKRMTKEKPVKSKTKLVSYSGHSIKVIGKSTVPLEHKGKFYPVELQIAEKSDVVPVLGLQTCLELNLIKRLFAVNDTSDETVVVEKNNGKVRVCLDPRDLNKAVLRDHYPMRTIEEVAAELNGAKVFSTIDASSGFWQVKLHAESSKLVTFNSPLGRYKFLRLPFGINSAPEVFQRRMTQALEDIEGVAVIVDDILVWGTALEEQKLNKEKSKIQTSELSYTGHLLTRHGVKPDPHKVNAIKEINTPEDKKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KSG7</accession>
    <name>A0A6S7KSG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016389">
        <property type="protein sequence ID" value="CAB4029762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KSG7"/>
    <dbReference type="OrthoDB" id="5985867at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="17"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="77" mass="8023" checksum="837E8B80FA1DA0DE" modified="2020-12-02" version="1" fragment="single">MASEAIPPPPPPPPPLLNNDNTNTSTLPNGPSTSQVQSSDNGGQTTSTDGTKSWERAWSVDEMRKGATNWSLASDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KT64</accession>
    <name>A0A6S7KT64_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042808</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020045308">
        <property type="protein sequence ID" value="CAB4046064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KT64"/>
    <dbReference type="OrthoDB" id="76385at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="32"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13834" checksum="B80631772B733FF0" modified="2020-12-02" version="1" fragment="single">LDTWLDDYLQKDIIEPVSDESTDWVSGLVLAPKPRNPNEVRVCGDYRQANTAIKREKHPIPTVDELMESMNGAIKYSKIDLKAGYHQIPLEKSSRSITTFITHRGLFRYKRLPFGINSASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KY25</accession>
    <name>A0A6S7KY25_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Alkaline ceramidase</fullName>
            <ecNumber evidence="9">3.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A086897</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the alkaline ceramidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.-" evidence="9"/>
    <dbReference type="EMBL" id="CACRXK020017590">
        <property type="protein sequence ID" value="CAB4031392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KY25"/>
    <dbReference type="OrthoDB" id="187171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046514">
        <property type="term" value="P:ceramide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008901">
        <property type="entry name" value="ACER"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46139">
        <property type="entry name" value="ALKALINE CERAMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46139:SF3">
        <property type="entry name" value="ALKALINE CERAMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05875">
        <property type="entry name" value="Ceramidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0106">Calcium</keyword>
    <keyword evidence="4 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="121"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="173"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="210"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR608901-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR608901-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4031392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30559" checksum="2F991598CB36F4DF" modified="2020-12-02" version="1">MAVHFERGTAHVDWCEPNYAISPNIAEFFNTISNVIYFVIPPFNIYLFWEYSNKVGSSFNVVWILMMVIGASSAYFHATLSLVGQLLDEVAILWVLLAGYALWTPEWMIQYTGIFKSRTGFKLAAVVVAVVATLLGFVYPAANAIALMMLGVPCVPILWKEIQRCKSTKVVKLAYIGILWWFVAVMLWLSDRLLCDIWKYFSFPYFHCGWHVFILLGSNIGCVLGCYFYSHSEHKELKTELSFWPTSFGTWGLPYIAVRKKPLQKQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L042</accession>
    <name>A0A6S7L042_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001434</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013835">
        <property type="protein sequence ID" value="CAB4025809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L042"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="62"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17438" checksum="7CCDA9A4DA19505B" modified="2020-12-02" version="1">MGLKLNKSSIGIPQKCIKLACEYISETLTTIFNQCLLQGIVPDILKISKVTPVDKGGEITDPANFRPISTPSTIAQIFEKLIYKQLIRYIEKKDILFQFQFGFRKGRSTAQAITEITENLRKAIDNKLYTCGVFLDFSKAFDTVKLIMRYSSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LKS2</accession>
    <name>A0A6S7LKS2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Integrin beta</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A062078</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Single-pass type I membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the integrin beta chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019607">
        <property type="protein sequence ID" value="CAB4033859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LKS2"/>
    <dbReference type="OrthoDB" id="410592at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005925">
        <property type="term" value="C:focal adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008305">
        <property type="term" value="C:integrin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005178">
        <property type="term" value="F:integrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033627">
        <property type="term" value="P:cell adhesion mediated by integrin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016477">
        <property type="term" value="P:cell migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007160">
        <property type="term" value="P:cell-matrix adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007229">
        <property type="term" value="P:integrin-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015812">
        <property type="entry name" value="Integrin_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002369">
        <property type="entry name" value="Integrin_bsu_VWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10082">
        <property type="entry name" value="INTEGRIN BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10082:SF60">
        <property type="entry name" value="INTEGRIN BETA-PS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00362">
        <property type="entry name" value="Integrin_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01186">
        <property type="entry name" value="INTEGRINB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0130">Cell adhesion</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4 8 9" id="KW-0401">Integrin</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4033859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24759" checksum="83A7B59E6F548D17" modified="2020-12-02" version="1" fragment="single">IGLPYSVGKDKPYDYKHILTFTSNANEFRSKINNQVSSGNRDEPEGTLDALMQVAACEQELQWGAKESTRRMVLIATDSTFHMAGEGRELVKSYNHSRHRSIGMSPVDVNKDNESIVWQNLYGEESDKPVRFKFNIDQVRISKARRTFKKGYLPSWTQRILMFFDDHPCTRSLILMKNWKEHFTNKTFRKSTNQTVIFIESKKYLDHACVINV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRA6</accession>
    <name>A0A6S7LRA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028829">
        <property type="protein sequence ID" value="CAB4041732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRA6"/>
    <dbReference type="OrthoDB" id="5982998at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69349">
        <property type="entry name" value="Phage fibre proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="136"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="18169" checksum="1D8DFACCB4D8DF66" modified="2020-12-02" version="1" fragment="single">MVGFWLVVYGIAQQYIAQSGMTGTGESSMSTTGGPSMTTIGESSMTPTGNPRITATGESNVTASGESRMTATGESSMTTIGESSMTPTGDPSVTAIGESSMTLDNGEISMTTSGESIMTTSGESIMTTTGESIMTTTGESSMTTTGESSMTTTGESSMHTTGEPQIFVVDEDVSGSTTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D4V2</accession>
    <name>A0A7D9D4V2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Major facilitator superfamily associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A057692</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. MFSD6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000019">
        <property type="protein sequence ID" value="CAB3976910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D4V2"/>
    <dbReference type="OrthoDB" id="5989317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd17335">
        <property type="entry name" value="MFS_MFSD6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051717">
        <property type="entry name" value="MFS_MFSD6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172:SF2">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="99"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="220"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="257"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="303"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="337"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="368"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="462"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily associated" evidence="8">
        <location>
            <begin position="37"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="485"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="485"/>
            <end position="499"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3976910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="545" mass="60364" checksum="16452B2CCE4EDA67" modified="2020-12-02" version="1">MDDMDTSTVEEKKLPNRNKASPSKRLFHINRKLLVSKIFYFFYWGAVGSFLPLLGVYFKQLGMSPSQSGTLVGCRPMVEFVSAPMLGSLADKLDRRKTLLLFSLVSWISFTFSFAFIKPAPVSCKKYFLLTKNVSEISKHATLELRDFLGPRTATKTLPPEPKAKNSLVFSPSGVHQVFLVLLFLTVIGEFFSAPAITLADSATLQLLGDEKDKYGRQRLWGSFGWGTAMFVLGFVIDKIQGYEVCGEVVSNNYTPAFYFFVVLMSCALLVATRFSFISKEQQPKSKAGGGLQLLRVLLTIRYLSFLFVAFFMGCGYGLISTFLYWHLEDLGGPPTLFGIASLLDHISEIICYFQVEYIIQKIGHVPVLYLGLIGNIIRFVFISLLSNPWHVLPLEILQGITHAAVWASCTSYIGKIAPPEYATSAQGVLQGLYHGLGRGCGAILGGIFIHTYNTETVFRSYGIGCCVVLIIYSIINYILGKNTTKSSSKSKVSPTTTPGTPPAIELSLEFVQDVMPGNTKEDNVENINTHQRKPSVNNIANTSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5Q8</accession>
    <name>A0A7D9D5Q8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P2X purinoreceptor 7 intracellular domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A074572</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000045">
        <property type="protein sequence ID" value="CAB3977389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5Q8"/>
    <dbReference type="OrthoDB" id="9898867at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF3">
        <property type="entry name" value="UBIQUITIN-LIKE PROTEASE FAMILY PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="233"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="218"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="119"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="164"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="39938" checksum="9CF31A4D28BF8F26" modified="2020-12-02" version="1">MDESILSAADEIEHSAIEEIAGVPNADKNMAVCSCRGMCLREKGRNACPCKETGQFCSSVCHPDSTSCWNRLNQSDTDNSSETSEGETQGAYEHDSDEAYDIQEPSAKRARGRARGQRKFGETSSRDRETASETIRGSRARGRGRSRGRSRGRGRGSGVGRGRLQAEENAEQRVVDHEQQLQNLVANMDLDALRRLALELLRRQPATFADLVNGELPFVQGQLPDPDDPDRPDPPPDESPEWCFCGCCAPMPSQDENKCCSRRLMPCITINPLFNQLVLDANVLDIAMRYREDILVMDHPRNNENFRHSAYRQFVLWQHGRLGRGNRVVLPSCCVLAIRARYPSPNGVYTGFRPARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBT3</accession>
    <name>A0A7D9DBT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Arylsulfatase B-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A008457</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the sulfatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000446">
        <property type="protein sequence ID" value="CAB3981935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBT3"/>
    <dbReference type="OrthoDB" id="408574at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16029">
        <property type="entry name" value="4-S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047115">
        <property type="entry name" value="ARSB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024607">
        <property type="entry name" value="Sulfatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10342">
        <property type="entry name" value="ARYLSULFATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10342:SF274">
        <property type="entry name" value="ARYLSULFATASE B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00149">
        <property type="entry name" value="SULFATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3981935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="436" mass="49536" checksum="9E0137EDC93BC585" modified="2020-12-02" version="1">MLTGRYQIHTGLQHGVIYPAQPNSLPLDETTIADKLSESGYKTHIVGKWHNGYYKKECMPTYRGFDSYFGYLNGAEDYYTHMRSGGFPELLPFSLWSGYDLRRNETVSTKEKGEYSTFLFAKEAQNVITNHDSSSPLFLYLAFQAVHSPLQVPQQYIQQYEGVIKDKNRRTYAGMVSAMDEAIGNVTKTLQEKGLWNNTVLIFSTDNGGQVYQGGNNWPLRGWKGSLWEGGVRGVGFVNSPLLTKPRRVSHEMIHVSDWFPTLVKLAGGDLNGTKPLDGFNVWETINTGEPSPRIELLHNIDPVKTPWYSEWWSHGYQWCPQAALRVGDWKLLTGCPGDSRWIPPPNSSLNLNEENYLNNDTKKLFLFNIAQDPEERHELSSQYPEKVKELLLRLAEYNSTAVPVRYPHPDLAANPALHHGIWSPWVTSKHADITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFU6</accession>
    <name>A0A7D9DFU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049561</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000786">
        <property type="protein sequence ID" value="CAB3984794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFU6"/>
    <dbReference type="OrthoDB" id="7759031at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="222"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="183"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="222"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="241"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="730" mass="82872" checksum="7C5F9801BC93D75F" modified="2020-12-02" version="1" fragment="single">MVEEQAEPQPLQQPAVQIMQSVTITPMPEFCPDAKIGTSLSTRWNNWQSDFEMYITASGITDPKRKRALLLYQAGPRVREIFKQIPETGTDTDYDIAKQKLKAYFDPQKNRRYEVHRFRQTTQEHNETLDQFHTRLRTISETCKFADVEFEIEEQIIIGGNSSKIRKRALRDPTFDLKSMLLEGRRDEQSESKEQTDGACPAKGKTCNNCGKPNHFAAVCRGKQKQTRSPRYSNKKHAQRNLKTLDTGSNTSSDEDYLYTMTNTKHNNKVNVKVGGAKFQTTIDSGATINVIDRDTFNKMQDIKLTRTSTKAFAYNTKSPVEFLGKFEAVIETRKRISVATFYVAKAANCGNLLSLSTAQELGLISLHLDKLTSKDAALENILQKHSKVFSDLGKLKGEKIKLDIDKTKIPKAQPQRRIPYHIREKVKNAITELENQDVIEKVPENEATPWVSPIVAVPKKDGQVRICVDMRLANEAIRRVRHPIPTVNDVSFALNGAKFFSKLDLSQAYHQLELDEQSRYITTFSTHVGLYRYKRLNYGTNAAAEIFQYTLQTALQGLKGVKNIADDIIVFGSTRTEHDANLDKCLQRLAMKGLRLNRSKCNFLSTTLSFFGQVFSKEGTHPDPRRVADLLNAPQPNNAHEVRSFLGMANYSSKYIRDFATLTAPLRDLTKKDVRFEWTQTHQTAFEKLKNTLAIAPCMSYFDKNKQTFVTVDASLVGISGILSQKPRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJ96</accession>
    <name>A0A7D9DJ96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041499</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001132">
        <property type="protein sequence ID" value="CAB3987191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJ96"/>
    <dbReference type="OrthoDB" id="8033604at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="22312" checksum="683921CC666BD61A" modified="2020-12-02" version="1">MSKATDGSTPLAWDDPLPEKIMNRWQYWKDSLRDLQHVSIPRCYCPKEFCTTARPELHGFPDASQDAIGASVYLKLWNEKKEVSVSFVCRSTDITPQTNEIYPLCESDSEVRKEVDILATKVNTSNDAVGLGVKRFEGFSNLSSLQHAIAALIVIVRKVSIAIMKDGKKKVMLCHIKELILLVPGVVMKQDSTKDGEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKA7</accession>
    <name>A0A7D9DKA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001087">
        <property type="protein sequence ID" value="CAB3986887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKA7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="164"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="164"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="184"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="28528" checksum="8B56299821F0E51C" modified="2020-12-02" version="1">MPPRRVRRVGEVERALIYMTNKDPVWDINDIARDERFMNMPDNVQELTLMPVNDRRLDDEFANISQGSKGSEYTVFSIVQIMQPKAKLVLNYYFSGLLERVNEMQYADRQNAFREAANLAIRQRIEGAQGENIPGNNGEVDEVPIPPAQNNVNGNVMFLLEQAEQGQEQQPEPDGNEDEQVPPAQDPPRAMPIPIPVPGNDGERRPYHALARENAEALNELLTREIPVMTQQLQQTMELMNQLIRPQLDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E360</accession>
    <name>A0A7D9E360_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A035853</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003861">
        <property type="protein sequence ID" value="CAB4000538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E360"/>
    <dbReference type="OrthoDB" id="5972980at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4000538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="554" mass="63407" checksum="01AC9CCD025A6CDA" modified="2020-12-02" version="1">MPENCAFYNCPYSRRYEGLSLFKIPSIKSSDSEHTSRIKAEASNAWKTAILRTRQETSELKERFAKNNIFLCEHHFEAECIDSFPFTDKDGNEKIRKRLQTGAVPTLNLPVKQLDTLPGTSMPQQRRIIVRHDEPSTSSGVSQTPTFDDLKKYFKRDYRYLRDWTTDVTGNVIIVEMREPGYLVPRYHLEIDESLELTIAVYGATVPNSSALFPENNSRLCSKFKDLHNLLCGLQICCGVSVLENEPSVSETFLHVTPLVATKQQSSPVNYCQTRRSIKCEVLVEQGTDKCKPCCKFEEKKSQPKPALPAKAKAPLTACSSAKLQATIREERVQLKESQLKCMQLEDRLKRMEEEISSHGVTLDDDVSNSFLAILDQTNLQTSPHMRLVFEQQQKAMRTNKHAQRWHPHFIEFCLSIHAKSSSVYNELRKSEKNPDGILYLPHERTLRDYRNHFKPGAGFVLENIELLKSITKNYEGPARYVVLVFDEMKIKGRLVFDKHSGKLIGFTSLGDPDLDFSTFEELEVATHVLAFMIRGVQTTLKFMLVYFLTQTVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E754</accession>
    <name>A0A7D9E754_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">E3 ubiquitin- ligase NRDP1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A011042</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004273">
        <property type="protein sequence ID" value="CAB4002160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E754"/>
    <dbReference type="OrthoDB" id="203237at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd16449">
        <property type="entry name" value="RING-HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1070">
        <property type="entry name" value="Head and neck region of the ectodomain of NDV fusion glycoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4002160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="589" mass="66563" checksum="3474216F6A74A079" modified="2020-12-02" version="1">MASNYQLGYDDERFESIVNRNFHCLICFNVLKDPVMCRRNQHYFCRGCITEHLRRNSHTCPTCADELSVETLQDVPRIVKDYLDELSIRCDHYDRGCRELVQLQNLKRHVAECGFTPVACGNQGCGETISKRDRTYHESELCQFRKLKCHNCGEISTMMAGMETKMANLDTNQADMRTKLANVSTEMTDVKTKLTNTNTKLTTMDTKMADVKTKMAQTDTKLENLDTKLKNVDTKVTNLQVNVEAKFEAVNNEVRGMKMSLNEVKNGFDQLKEAVLEKIESKERKQEEITRDVSGTASGGRENQHIFVAGGLLKNNSVEIFNYRQRLWSLLKHMPVKGHDASSFVYNNHVTLAGGDCNRAAVDNMIQMKIHPIPDLSINWNDFGAKLPVKLFAHSSVVYKDSLFVTGGYNVEYIISDCIYEVQLKPPYAVKLVSKMPEPRARHNTVLCDDSILIVGGKKSLSSEYNLDSVLSYDIKKNECQQLPALPYPVSEMATVKWAENVVIIGGASKDEKALNNVIIYNMKTGNSHMLPPMLHKRRGCMAVVIENTIVVLGGQGLKSVEGFSFQSYLWEELPDMKELRYSATAVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAZ6</accession>
    <name>A0A7D9EAZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Metastasis-associated MTA3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A003069</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="7">Belongs to the metastasis-associated protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005063">
        <property type="protein sequence ID" value="CAB4004979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAZ6"/>
    <dbReference type="OrthoDB" id="2193595at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016581">
        <property type="term" value="C:NuRD complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042826">
        <property type="term" value="F:histone deacetylase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000122">
        <property type="term" value="P:negative regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04709">
        <property type="entry name" value="BAH_MTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd11661">
        <property type="entry name" value="SANT_MTA3_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000012">
        <property type="entry name" value="Metastasis-associated 1 family, member 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.1240.50:FF:000001">
        <property type="entry name" value="Metastasis-associated 1 family, member 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.490:FF:000043">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1240.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001025">
        <property type="entry name" value="BAH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043151">
        <property type="entry name" value="BAH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000949">
        <property type="entry name" value="ELM2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040138">
        <property type="entry name" value="MIER/MTA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017884">
        <property type="entry name" value="SANT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000679">
        <property type="entry name" value="Znf_GATA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10865:SF29">
        <property type="entry name" value="METASTASIS ASSOCIATED 1-LIKE, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10865">
        <property type="entry name" value="METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01426">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01448">
        <property type="entry name" value="ELM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00439">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01189">
        <property type="entry name" value="ELM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00717">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00401">
        <property type="entry name" value="ZnF_GATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51038">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51156">
        <property type="entry name" value="ELM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51293">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00093454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4004979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="451" mass="51425" checksum="7DF4EA28DE884226" modified="2020-12-02" version="1" fragment="single">MSTNTNSRIYRVGDYVYVETAPVYPYQIRRIEELTKLGNGQIEAKVQCFYRRRDLSNPLIAQADRHAGAAEEDAEIDMGDSELDDTKMHQLSHRELFLSRQYETINASQIRGKCLVTLYCETEELPRYSGKEDWFYYCLVYDPQQKALLADKGEIGIGSNYQPVVPQKLEDTNEDTRDLCQLETKIWTTDHTLTDREVDQFLVVSRSVGTFARALDCSSSVKQPSLHMSAAAASRDITQFHALSVLHKSSYELSKAVGCLVPTGGPVLCRDEMEEWSAGEAGLFEEAINKYGKDFSDIQKDFLPWKSISSIIEYYYMWKTTDRYVRQKRMKSVEKESDLKQILVSNPPGTTCVTGSGDKESVNSIPYPPPGVITKPPTPGYSCESCYANTSTHWFPWSTPNTQYRHYVCSVCWVYWKKYGGLKKPDGFSSRRVGEEVRYTCRICGKVFNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EB29</accession>
    <name>A0A7D9EB29_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082154</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004534">
        <property type="protein sequence ID" value="CAB4003081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EB29"/>
    <dbReference type="OrthoDB" id="1668162at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="383"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="383"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="435" mass="50445" checksum="762C952790B08382" modified="2020-12-02" version="1">MFADDLTMLSRLKSGLDRMLKTAWEYSQKWRFNFSVTKTVILIFGESQQEHEANNRSRAWKLGSQILSEKGSWSNLGKLWLANRDSKEIVSKATCAGREVCFMLMAVGTRYGGLNPMVSSNLWRKIGIPKFLYGSELWQLKMNNYIELEKVQNIMVRIMQGLLPGTSGSAARGLLGLLSVEAEIDKRKLYFLGRLINMGAGAPCRRVFFIRLLRWKWNCGKKLTGFVPDIVEILARYDLLQVLITYILTNDFPIKTLWKKTVNKHVREQYDRVWREKISKNNQLYLYSKVHTKNEVSHWWIIARKNPSFMKEINNVIRLICGSYKVRGKRVDHPNTYIDYCDSCNRNYLNPVNHALSYCLGSQNERELLWDWVNDNLPLEDKVFDPGEKVSDPEDKVPDAEDKVPDAEDRVPDPEDKVPDAEDNVPDADKDKEHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EH73</accession>
    <name>A0A7D9EH73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Histamine H2 receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A029093</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006641">
        <property type="protein sequence ID" value="CAB4009976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EH73"/>
    <dbReference type="OrthoDB" id="10042731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050569">
        <property type="entry name" value="TAAR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249:SF372">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249">
        <property type="entry name" value="HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4009976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="373" mass="42637" checksum="5A97D0DCCCB5EE4C" modified="2020-12-02" version="1">MFKNGSSEIGHDLVTFEDASGSGSGSGSGYWDDDDEDDEDHNLKAYFIPLCILAGLIVMVNSFILVIVWRNVKLRSNCNALLVSLAVADGTTGLVGIPVFVSLHFAQDRMTIQQLCFTYISVHTWFWFMSIVSIFHLLVIACEQYLAILKPFSHDKIVTKTSTAITLAIIWLLTIGHSLVPWSWTLRLGDEFCYVYDETEERNDKIYTILSIVAFFCVPIVILFYVYYRIVSEAKRQLCRIKRESVCSRGKYPSLSSCTRFRGFYIIALMFVVFVLCWAPYFVSVCYEAFGHEIESWLSYKLTLLRFLPSLLNPIMFAFWRSDFRAACIEKFCCCVATNDQTRSTLSSGKQQLPLMNRENRLSDSKDSKPQNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENJ9</accession>
    <name>A0A7D9ENJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032583</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008371">
        <property type="protein sequence ID" value="CAB4014607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENJ9"/>
    <dbReference type="OrthoDB" id="5980831at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301:SF10">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23549" checksum="9DD7596C05511E74" modified="2020-12-02" version="1">MSFLAVIFLYAPPDFANEQINHGQMADIQEYSNLKEYSDIVIKKADKGSAVVVWGLDEYRKEAYRQLKDDDVYEKFLDNPINKVVALIDEKLHNYAREGKITQANLKYLKGENLNLGRFYLLPKIHKSLVDVPGRPVVSNCGTPTERISEFVDYHINPIVKVLPTVLSDTSDFLRRLDELGHIPEGAIFGTIDLVGLYPHTSQRRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EQW2</accession>
    <name>A0A7D9EQW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062084</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008621">
        <property type="protein sequence ID" value="CAB4015198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EQW2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12116" checksum="ABF563AD5E40CF17" modified="2020-12-02" version="1" fragment="single">RRGSGPETCTSIVNSAPSSGKCPRMRRYSLPASKTSEKFPRIVRKMRNGSEGDIDISSEIPEDLGKNISFEYVFRLWNTRLPKKLANDLKRTMTHERKLRDLGYAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWH8</accession>
    <name>A0A7D9EWH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009751">
        <property type="protein sequence ID" value="CAB4017883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWH8"/>
    <dbReference type="OrthoDB" id="998159at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18551" checksum="1403E26A7C048EBF" modified="2020-12-02" version="1">MALIKAQRTYLDGMVEWKAFDTVPDEILCNKLKKLPISPYVTNWIINFLTNRYQRVVVDGVKKEYLPINRGVPQGTVLGQILFSIMINDIRPVQASNLIVKFADDINLGIKVTDDSDVFYMETNNIINWAETNRMKRNYKNVGDGHSRQDNPATSCASAYDCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EXZ3</accession>
    <name>A0A7D9EXZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069956</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010309">
        <property type="protein sequence ID" value="CAB4019126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EXZ3"/>
    <dbReference type="OrthoDB" id="6220511at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042421">
        <property type="entry name" value="C3orf33-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035437">
        <property type="entry name" value="SNase_OB-fold_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28434">
        <property type="entry name" value="PROTEIN C3ORF33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28434:SF1">
        <property type="entry name" value="PROTEIN C3ORF33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50199">
        <property type="entry name" value="Staphylococcal nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="27623" checksum="094677691AE130D8" modified="2020-12-02" version="1">MVDKNRNDSSGKNEELLSEHNILNKFQIFLDNNIQIIRNAVWIIGGIGLVIIVRRTYALHHFTKQSSIPEIYFRNNVTLTGKVVKVHNNGCLGILHLPLLWRARINYISNPDSSLLNVNVTGIELQSGGVDYLNTQLPNQNIKFQLLGKDECDNIESIISQNKGWLRRRSCINEEIISLGFATAKHVPALCDVKAYNLLIERLVKAEVKAVKKKSGIWKDDVNDGIFYRTWSWLKKKVFRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F0H2</accession>
    <name>A0A7D9F0H2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Major facilitator superfamily associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A031163</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. MFSD6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010766">
        <property type="protein sequence ID" value="CAB4020070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F0H2"/>
    <dbReference type="OrthoDB" id="10061976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051717">
        <property type="entry name" value="MFS_MFSD6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172:SF2">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Major facilitator superfamily associated" evidence="6">
        <location>
            <begin position="1"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4020070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="498" mass="55796" checksum="EF8D4E528C295A48" modified="2020-12-02" version="1">MKQLGFNPGQIGLTALFGIPHLFIPLCLLFGEKLRARMIVAVFGTLAASVCCMLPLLSLIVPALQPTCYTKPYIAFKSASKAIQLRNGTVHLNYSSYAFRSNTKHFTSTESLEAVQQHIFINSSVDITANNPSAFVIHRTISHLPLNNPLNTVSVHSKNSNPTRTRITDLQPHHPKAYLTSTHTPSIPEVASGHNGRMLSKDKTRLSVSKIHHSLRFNNTLTIQRTRPSNYSSNPAKPSSKTRNSQSSLSALFLILIISRSLTQFFDRIDLSLANLATMTFIQGRNGSYGVYRMWSYIAIALSLPSVSVLAWYIRINMCGVTKYGYFVAFIWGGIMLLLSMVSLPWFKFEYNEKKAFTWSGVKSDVFNTHYILMFVVQFYAGLCLAFQCYWEFWYLDGLSASPLLIAAAGLVRRPLVAMSAFLSTHLIRKIGELKTICVAMFLYACSYFALSFARVAWLVIVIDMFQAFAPAINYCAFTAIFYNASSKENSSMILGKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H7C1</accession>
    <name>A0A7D9H7C1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MRN complex-interacting protein N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A086006</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000041">
        <property type="protein sequence ID" value="CAB3977301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H7C1"/>
    <dbReference type="OrthoDB" id="5960226at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007095">
        <property type="term" value="P:mitotic G2 DNA damage checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032739">
        <property type="entry name" value="MRNIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049472">
        <property type="entry name" value="MRNIP_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15863">
        <property type="entry name" value="MRN COMPLEX-INTERACTING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15863:SF2">
        <property type="entry name" value="MRN COMPLEX-INTERACTING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15749">
        <property type="entry name" value="MRNIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MRN complex-interacting protein N-terminal" evidence="2">
        <location>
            <begin position="6"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="131"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="200"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF15749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="26426" checksum="3E3BAEBDCC5ED374" modified="2020-12-02" version="1">MAQVCVVNCCSCETFQGQQVKKGKKWMCKMCGEKQSFRKIFAQGSGKECRQVVQKLNMINGNLKRQMMEEGCLQERNNETTGIDVQGNEEKCRMNQTSKWNQFVSSATSNPTEIEELHENSTEFTTERETFKKHRAEKRKKPMKEITSDNMNEYQQRKTQKFNNSKRAYPHGKTGESHLGNLGHEVNDALSPKNERSCTNEKLSQRQTQTCPSTDASGPAKFSKWSKYTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9W2</accession>
    <name>A0A7D9H9W2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase</fullName>
            <shortName evidence="13">GNT-I</shortName>
            <shortName evidence="13">GlcNAc-T I</shortName>
            <ecNumber evidence="13">2.4.1.101</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A082039</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Initiates complex N-linked carbohydrate formation. Essential for the conversion of high-mannose to hybrid and complex N-glycans.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>N(4)-(alpha-D-Man-(1-&gt;3)-[alpha-D-Man-(1-&gt;3)-[alpha-D-Man-(1-&gt;6)]-alpha-D-Man-(1-&gt;6)]-beta-D-Man-(1-&gt;4)-beta-D-GlcNAc-(1-&gt;4)-beta-D-GlcNAc)-L-asparaginyl-[protein] (N-glucan mannose isomer 5A1,2) + UDP-N-acetyl-alpha-D-glucosamine = N(4)-{beta-D-GlcNAc-(1-&gt;2)-alpha-D-Man-(1-&gt;3)-[alpha-D-Man-(1-&gt;3)-[alpha-D-Man-(1-&gt;6)]-alpha-D-Man-(1-&gt;6)]-beta-D-Man-(1-&gt;4)-beta-D-GlcNAc-(1-&gt;4)-beta-D-GlcNAc}-L-asparaginyl-[protein] + UDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11456"/>
            <dbReference type="Rhea" id="RHEA-COMP:14367"/>
            <dbReference type="Rhea" id="RHEA-COMP:14368"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:59087"/>
            <dbReference type="ChEBI" id="CHEBI:60625"/>
            <dbReference type="EC" id="2.4.1.101"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13">The cofactor is mostly bound to the substrate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 13">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Golgi apparatus membrane</location>
            <topology evidence="1 13">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the glycosyltransferase 13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.101" evidence="13"/>
    <dbReference type="EMBL" id="CACRXK020000188">
        <property type="protein sequence ID" value="CAB3979344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9W2"/>
    <dbReference type="OrthoDB" id="440755at2759"/>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003827">
        <property type="term" value="F:alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047223">
        <property type="term" value="F:beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016266">
        <property type="term" value="P:protein O-linked glycosylation via N-acetyl-galactosamine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.550.10:FF:000252">
        <property type="entry name" value="Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004139">
        <property type="entry name" value="Glyco_trans_13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039477">
        <property type="entry name" value="ILEI/PANDER_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052463">
        <property type="entry name" value="O-linked_mannose_GnT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46396">
        <property type="entry name" value="PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46396:SF1">
        <property type="entry name" value="PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03071">
        <property type="entry name" value="GNT-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15711">
        <property type="entry name" value="ILEI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52031">
        <property type="entry name" value="GG_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 13" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="10 13" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="12 13" id="KW-0464">Manganese</keyword>
    <keyword evidence="11 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 13" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU368119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3979344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="654" mass="75558" checksum="D1B88351E12DCA59" modified="2020-12-02" version="1">MSWKPNPNAMPFQPTNAYYTIKLPCCQNAWKIRKKGLIGRCVQWTLVFILFITVVVNVLFIMDTTSKFRKQQLSNPEGEDKGFEERRHVIIDAKDKGKSIDIEVHSSKDSVFVSVDGTKVMEETTTSESARGIHVTVLHQATGAIMATRTFDTYMSKDESAGLVLFLNMVSEGRILCFAVKDEASFNLKKPVQNLIRSLGSVHIDSLKWRDSWAFIVTKRGKKYAEEYHHASDVAHWGDPVTARATVDLAPAEQSQCHWDESEVSKRRRTFCDRFEGYGSVCSCSNPAPINIKSPELDKNTVSQIPVAIIASNRPHYLYRSIRSMLSAHGAKKELFTVYIDGFFEEPAAVAKLFDLKVVQHVPISSKNARISQHYKRTLTETFNAHPNAQYMIILEEDLDVSVDIFSYFSQLLPLMDQDESLYCVSAWNDQGYDHTCNDPSMLYRIETMPGLGWLLKRRLYKEELEPKWPTPDLFWDWDMWMRMDSNKKGRECIIPDISRTYHFGAKGLNMNAFFQESYFKKHTLNTEPNVKFNVEQMKKENYEQEIERLMGIAEQLDHSKDPCKNEKDFIPDTTGKTYVFYIEMKHPSDWTTWNNIARCLHIWDLDVRGFHKSMWRLWLKGNHVLIVGSPASPYAKHKPENVKPIFIPKKSEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC27</accession>
    <name>A0A7D9HC27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transmembrane emp24 domain-containing 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A037440</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Membrane</location>
            <topology evidence="1 7">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the EMP24/GP25L family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000233">
        <property type="protein sequence ID" value="CAB3979825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC27"/>
    <dbReference type="OrthoDB" id="3427at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015720">
        <property type="entry name" value="Emp24-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009038">
        <property type="entry name" value="GOLD_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22811">
        <property type="entry name" value="TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01105">
        <property type="entry name" value="EMP24_GP25L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01190">
        <property type="entry name" value="EMP24_GP25L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50866">
        <property type="entry name" value="GOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="GOLD" evidence="8">
        <location>
            <begin position="32"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3979825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="25533" checksum="EBEBFC584348ACBA" modified="2020-12-02" version="1">MAVSWLGFVAFLCIIFARSGLSLYFHMGETEKKCFIEEIPDETMVTGKYKTQLYDENINDFLPSSPGIGMHVEVRDPNDKVIMSRYFSAEGRFTFTSHAPGEHSICLHSNSTRWSLFAGGKLRVHLDIQVGEHTNDYTEIAAKDKLTELQLRIRQLLDQVEQIGKEQAYQRYREERFRATSESTNQRVLWWSLGQTLILLLTGFWQMRHLKGFFEAKKLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HYR4</accession>
    <name>A0A7D9HYR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064188</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002929">
        <property type="protein sequence ID" value="CAB3996701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HYR4"/>
    <dbReference type="OrthoDB" id="5972573at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="34517" checksum="7044F1480ECA6D46" modified="2020-12-02" version="1">MEINWIVGEANVGVERICPGIHITQSQWQAEWNEPFQPEQNDDLSDPVCSIPQFIWSFASVIIVNPAGATRTSIPIVDLVHATNRQSAVEIIMCDGFTGQLKKINEDVMARFSWWSPKFNDGTVESVRDRLIEDIMGLFGGDGNQLDQHHLEALRNQFPISNAFKIQEQYGDNSFTYTIEELCEFYARVMRLEVEQLRFKVLGTYLYKQEIMHAVCVCGGEDAEEMFNIYPDVSTPEDGDGAVVTRNADGNWEWKAQATATEMLQFNGVNVLKYRRWEHVAFAFYLPPEHHLLHVDDIERH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I1Q7</accession>
    <name>A0A7D9I1Q7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="10">5.6.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A001313</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9 10">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020003439">
        <property type="protein sequence ID" value="CAB3998783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I1Q7"/>
    <dbReference type="OrthoDB" id="10261556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd17920">
        <property type="entry name" value="DEXHc_RecQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004589">
        <property type="entry name" value="DNA_helicase_ATP-dep_RecQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032284">
        <property type="entry name" value="RecQ_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018982">
        <property type="entry name" value="RQC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00614">
        <property type="entry name" value="recQ_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF105">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE Q1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16124">
        <property type="entry name" value="RecQ_Zn_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09382">
        <property type="entry name" value="RQC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00956">
        <property type="entry name" value="RQC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="4 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU364117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3998783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="752" mass="85251" checksum="526E3DC836621DA3" modified="2020-12-02" version="1">MADYDEYNESKQYTLFPCTHPTCANSKKWYKKLEQHYNCAHEGEQCCLEDAIKERWRRRGQRMLNKIMQSCSDMVDGNIYNLSSCEQDFQLQSTSSEIAELKVACVLLEQGKLKQYSEEPYREITVKTPNETVVYEAWKEFDEQQDKYLPKIQTKRTTVNMGWFENNTGLSDIATSTEFGIPEERRDDVDDVSDPFSSVCISSESLVAATETVLKQLTMPVTQAEQLLPLMEAIFGHSSFQLKQKQAINSCLQKKNTFVVMPTGGGKSMIYLLPALAQHGLSIIISPLRSLIEDQISRCTSLGICSAFIMGEMTNTEKQKVYCGLKQPQCPFKVLYTTPEVITTDKLLRDILLSLHSTGAIQQFVIDEAHCVSQWGHDFRPSYTDVKLIFYDYPKTPVLMLTASATTEVVSEVVAILGLTDVEVITSDFDRPNLVYLVQQKSSKTVADIVDIVKPLSCSLVYCSSRTECEELSAKLESHSIMSKAYHGSMSKQLRSSLYTQWMAGDLQVLCCTSAFGMGVNKSNVRAVIHYSLPASMEDYYQQIGRGGRDGLQCKCVLFFSATDQICHVQRIFAKYNKDSAALSARLKNFQALMSYCLNKHLCRKRVLLNYFGQSPLKDCNCQCDVCTTQCNTKELDITNYTLSIANCIQKLKNDYNGKRLTVKQLANIITGKKTSEIIKKKYNELPGYGCFMETSEQGELLLRRLVVVDILREVPNDENPRNALYVDIGSKFMTILNNENRITFFKVNKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDG0</accession>
    <name>A0A7D9IDG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066176</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005485">
        <property type="protein sequence ID" value="CAB4006343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDG0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="65" mass="7055" checksum="279C9820DFAD4F11" modified="2020-12-02" version="1">MGLMLGCTLEQPFMSNERGVYKCSSLRLAAEDLLNHIAGYGKPETLSHLCVAGSKHQDLNFPCSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDT3</accession>
    <name>A0A7D9IDT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A041691</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004927">
        <property type="protein sequence ID" value="CAB4004519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDT3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12012" checksum="308D9ABFEB8B6E63" modified="2020-12-02" version="1">MEDKPEQIREQVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAQPKETSSNESMITYIGVAIALVSLVLAFKSHQRETREPEPKHVTETVEITRKVDESKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IH46</accession>
    <name>A0A7D9IH46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A010365</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006769">
        <property type="protein sequence ID" value="CAB4010384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IH46"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043411482" evidence="2">
        <location>
            <begin position="23"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="167"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22675" checksum="BFAFE5CB5B2D683D" modified="2020-12-02" version="1">MKSCEVLLLVFVAFFMINASAAEKECPERAIAIETEEGRLCICTKGYFGDTCQLNVSSLEKNEKTLNQSEGNCRFWHQCLAVRWFNLMRSFKAFFKDFEQLSFVIGVVTGVVASPILRAIVYAVVRLCILCNGKKIRKDRSELRASTESQPSSGSVVIEMEPQLQECPEASKDDGADSQPIDQPQEDKQSELPGADCASESISK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IY92</accession>
    <name>A0A7D9IY92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019474</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009220">
        <property type="protein sequence ID" value="CAB4016693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IY92"/>
    <dbReference type="OrthoDB" id="5989756at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18686" checksum="1195867237851A82" modified="2020-12-02" version="1">MSARRLTPVEEDVLALGLNFAVVPRVLPKEEFVQRLEPKLYHMTNDAASNIRVQITEVLRRATLPASNLTKNKKDALRNLRADKSIHILKADKGNATVILDRLEYDNKILALLNTSTYKELKRDPTANIERKICSKLSGFKKADTKGNKAITNTGTKKYHGTTPKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8H1</accession>
    <name>A0A7D9J8H1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4371 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002000</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012896">
        <property type="protein sequence ID" value="CAB4024202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8H1"/>
    <dbReference type="OrthoDB" id="5986682at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="46"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="21886" checksum="7F7728239C852548" modified="2020-12-02" version="1">MANFMDVMTRRTVAIDEQLNQITFRQIQQNREKMRSIIKTVVFCGQNAVALRGARDDNPDDETLQGNFQALLAFRVDSGDKTLQEHFENAPRNATYRSKTIQNEIINTVGSYITSKISAEIKESKLFSVLADEAADISNKEQLSLVLRFVDSSQQIREEFVGFYHCEDGTSGVALKEMILKAVADLGLPMANCRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDR1</accession>
    <name>A0A7D9JDR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Oxysterol-binding -related 11-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A024231</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014880">
        <property type="protein sequence ID" value="CAB4027567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JDR1"/>
    <dbReference type="OrthoDB" id="48057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032934">
        <property type="term" value="F:sterol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006869">
        <property type="term" value="P:lipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13291">
        <property type="entry name" value="PH_ORP10_ORP11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019023">
        <property type="entry name" value="Lamin-B_rcpt_of_tudor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000648">
        <property type="entry name" value="Oxysterol-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10972:SF141">
        <property type="entry name" value="OXYSTEROL-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10972">
        <property type="entry name" value="OXYSTEROL-BINDING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09465">
        <property type="entry name" value="LBR_tudor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63748">
        <property type="entry name" value="Tudor/PWWP/MBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0445">Lipid transport</keyword>
    <keyword evidence="3" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4027567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="25440" checksum="2A34B27775BCD61E" modified="2020-12-02" version="1">MAKDLTRMPSLSEVDLSGLNDWEKSSITSVMEKAQEIQKKDEDNILRQKMEGQLSKWTNLMKGWQYRWFVLNSDTGHLEYYVDKSKRTQGSEPRGSVYLMGAVIAPSDEDSVTFSVNAANGDLFKLRACDARERQQWINKIRMISEMHSTQLVNIPQDNEVKIGQKVIGYWPGRVRYYPGQISKFCDDGSKYFLKFNDGDERCEAVYEIRIVPEVSPCDSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JFQ8</accession>
    <name>A0A7D9JFQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080891</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015673">
        <property type="protein sequence ID" value="CAB4028722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JFQ8"/>
    <dbReference type="OrthoDB" id="998159at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="304" mass="34872" checksum="95678ADF28E190F7" modified="2020-12-02" version="1" fragment="single">KRTTSGPDELPHWFWNTYAYDIAPVITIIFNSSIKLGIVPDSWKLANLLPVPKESPLTESNQLHPISLTNIIVRLFERAIYTTELVQVMENAIHKDQFAYKRGYSSTMALIKAQHTWMEWLDGNASMVRVFSFDFSKAFDTVPHEILCNKVKKLPISPYITNWIIHFLTNRYQRVVVDGVKTECLAINRGVPQGTVLGPILVSMMINDIRPVQASNLIVKFADDINLGIKVTDDSDASYMETNNIINWAETNRMKLNYKKTWEIVIHGKITRPLPAPLPMIVRKNWLKILGVTFQENPSMWDML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHD6</accession>
    <name>A0A7D9JHD6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NB-ARC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016429">
        <property type="protein sequence ID" value="CAB4029808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHD6"/>
    <dbReference type="OrthoDB" id="6136658at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691:SF3">
        <property type="entry name" value="HTH-TYPE TRANSCRIPTIONAL REGULATOR RV0890C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691">
        <property type="entry name" value="REGULATOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="1">
        <location>
            <begin position="94"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27711" checksum="50B9E4F39B10FC55" modified="2020-12-02" version="1" fragment="single">VQLIEKLQSVQQFFAKEIQNVLDNHSVMGKDIEDLKVNYQTTSQQLQTLQNEVSKLSIAHEKIPYLFMLPDRTEWFSCRDSELENLHTLLQINDDINESKVQIASVCGLGGCGKTSLAAEYVHRWKDYYEGGVFWFSGEDETRFANSVDDHAVYLGTLVEASAGRALLKTLEEISKIKKPWLLVLDDMDEFKLCSNIGMLLSGPWKRRVKGSGHILITTRREPKVMRETVRGLIESQCLQLVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JXH6</accession>
    <name>A0A7D9JXH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031023</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023834">
        <property type="protein sequence ID" value="CAB4038120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JXH6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008160">
        <property type="entry name" value="Collagen"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01391">
        <property type="entry name" value="Collagen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="11195" checksum="28DDC14A3DFD9634" modified="2020-12-02" version="1" fragment="single">VRGPPGNLGYAGRQGGEGEPGPQGSKGAPGDFGTTGIPGVVGEPGNSGANGLYGLVGPPGHIEIERSGLKGPIFDGYVMRSAEQNFSVIIATEITKNPKRGARGPKGLKGVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JZ01</accession>
    <name>A0A7D9JZ01_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056877</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023941">
        <property type="protein sequence ID" value="CAB4038213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JZ01"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000922">
        <property type="entry name" value="Lectin_gal-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043159">
        <property type="entry name" value="Lectin_gal-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02140">
        <property type="entry name" value="SUEL_Lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="22952" checksum="D586AB9FF4BC8B9E" modified="2020-12-02" version="1" fragment="single">HTDSGRCITASDELAYDAPNLAFPYFVVMTDNCLNVSAQFRYLDNELLHNTEKKGTLISSTHVSYHDRWAVYKGSRNVCAEPATIYVLKNATCDTEKQKFTFGSVTAYNAKMEYVHCSPKQKMVVKSADYGDFNKNGAFNDDQNIDTTCSKLTNCQVKSLCGGNRSCELTMDKNLLPSQYCSDTLKEIYTKYTCVDTYGSSTITT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JZ59</accession>
    <name>A0A7D9JZ59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110065298</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089920</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024723">
        <property type="protein sequence ID" value="CAB4038898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JZ59"/>
    <dbReference type="OrthoDB" id="6075577at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13676">
        <property type="entry name" value="TIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="279" mass="32204" checksum="9AD1B1688EE54DAA" modified="2020-12-02" version="1" fragment="single">MLKLLMNAAIHWMKAGLPLRSLKIVIFSRNIDNISKSDQPLFDLFQKLKDIHEQGEEKQDKEVEVESDRYDIYLSYSEEDIKCVDQVVDVLVKNKTNIRVFSSIQKLDLETSWQTQLYDVIKKCTRVMALITPSFLQSERCTEQYNIALCHSRKTQESVLMPLYVSEVPYMPTYMRITQYIDCRISFQEKLNAACLTVIGSLSYEALEVTTKADKDTLASPKPANQTYDVFLSYSHCNSEHAMQIMKELRIKKPDLDIFIDTAELKAGGAWQLTLYNAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K3G6</accession>
    <name>A0A7D9K3G6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016780</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026030">
        <property type="protein sequence ID" value="CAB4039901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K3G6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="374" mass="42361" checksum="E15A8E7B66224B16" modified="2020-12-02" version="1">MSLQEIKTDYLTQWLNQLIESGIINREHLIYQNIDAFLTEQLSQPNPVTNWEQWPTLYSYCESLSALATRKGYMFYLGSKRFGLKKHRDIVAQKVSYCNPGPSLCTLDSRKLTPIYNSSPHLNNLMLLLTLLNTLDGVPCFKAPGLKKFFTIVHYDGMPLNIGTFPRQENGETFFDGIIPTIKLRKMRELYQEGNNAVHKFITENCTWVSEVNECDICDASGKVHLNVFTRFGSMGGDAESVERGLTESLKCIEASSNFLLSGNGKNCKFASLGEVCNRCKTLDVEKEPCMSAKCIHVSSDQASSQRRAHMNLNEKSLSDMNNPDYRSYGFGLLHFCKNCISSLRHYRLTDMSGTFFVAQLSSVGHLIPQKHRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K5D1</accession>
    <name>A0A7D9K5D1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A020572</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027090">
        <property type="protein sequence ID" value="CAB4040665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K5D1"/>
    <dbReference type="OrthoDB" id="115435at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="8">
        <location>
            <begin position="137"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4040665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="347" mass="40043" checksum="C3198AD3C7999A78" modified="2020-12-02" version="1" fragment="single">VRVAEKDKPKTVLTTPFGLYEFNRMPFCLTNAPATFQRLMERCLSGLNLKICLVYLDNVIVFARTFEEMLERLEAVLRRLGEFGLKLKPSKCKLFQTKLTYLGHVVSENGVEPDPEKISALPKWLCRNQTLKCLRHSCVGLGAVLYQLQSGKKRVLAYGSRSLTHSEQRYCAYCREFLALKWAVTEKFRSYLYGRKFHVITDSNPLTYLLTSAKLSATDHRWLASLSTYDFTISYRTCGSRIMTPGNRTTLDPIIPEAIPEEVNVDENQSVTRSGRISKPPERLGIQPERSKFAIIWWRQAYSINKTQEWPLSFRTKRMIRITPQVIRTFPEKEIVEVEEGNVTNVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K6J5</accession>
    <name>A0A7D9K6J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin repeat domain-containing 34B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025173</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027862">
        <property type="protein sequence ID" value="CAB4041157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K6J5"/>
    <dbReference type="OrthoDB" id="5957333at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46564">
        <property type="entry name" value="TRANSPOSASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46564:SF1">
        <property type="entry name" value="TRANSPOSASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tc1-like transposase DDE" evidence="1">
        <location>
            <begin position="189"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="369" mass="41426" checksum="D6F6E605078E868A" modified="2020-12-02" version="1">MCEEAAIDLINVDECGVDLLSNGDHAEASIYKLTVDEIVTVIHSGGNIITQEYPGNFSAIAKQFSVHDSTVKNIWSNYCENKTLDPKKKKGGNPSKLHDGDLELIETLTRIRPTISLNKLKDDVELYDPKPDGVSISAISRALKQRMPSGLQYSRKKVNKVAIERFTPVNMVYTQMFINYLHSKDPLKLKFFDEAGLKLPHHGTRYYGHAPVGERCIELARYHQTPNITLNLLAGLEGVVYANTVKGAASTVHLLQFFGEAAQAGNVITQRPALEYGDIVVMDNCPTHHYDGEEVLTEFLNEIGIELVYTPTYSPDFNPAEFVFGKIRTEMRYALWELTNRNLVLSVYEAIDKVTEQDTIGFFRATSYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KIR0</accession>
    <name>A0A7D9KIR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Heterogeneous nuclear ribonucleo M isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064834</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038786">
        <property type="protein sequence ID" value="CAB4045327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KIR0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="10418" checksum="1B2B7FBF37595030" modified="2020-12-02" version="1" fragment="single">GVNCVGIGVDCVGSGVDRVGYSGVDCVGYSGVDCVGYSGVYCVGYSGVNCVDSGVDLVGSGVDHVGSGVDRVGSGVDRVGSGVDRVGIGVGNGIILMVEVQVEVHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KJS2</accession>
    <name>A0A7D9KJS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038502</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043958">
        <property type="protein sequence ID" value="CAB4045969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KJS2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="34273" checksum="E2C1B5E5FB6352AF" modified="2020-12-02" version="1" fragment="single">MASNKSQSTSEETAMELDGMSRSIRSYRSHLSRTITTTKRFVTVTKEHGSSSAKDALLSRLEEVQGYFRKIVDLTMAMQQSDNRNLDKYDDDLDVDRARFDELSERVMEAIADNPTPQPRINAENEERRPVRINDSLKPSMLSKDASPTELKQWLEQYEAYYESNQMSKMTIKEQHSYFKMLLDSDLRTRMAAQTGPRTNIFGNESLIESLKEDFAMRYPLVTRRLDYFSRKQKNGEQFSDFLSKLKELGELADLDGITKEDILVFSSLSGTNNKELLDDLLKIEDASLKNIEKAAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L0I2</accession>
    <name>A0A7D9L0I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041601</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011167">
        <property type="protein sequence ID" value="CAB4020881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L0I2"/>
    <dbReference type="OrthoDB" id="2281581at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="724" mass="82194" checksum="94E5651CA9B799B6" modified="2020-12-02" version="1" fragment="single">TITFLGFLLNSLLMQISLTAHKAQKIKQMCQELLANPRDVTHALGTFTASLPGVMYGQLHYRWLEMDKTDALKINKGNFDKLMTLSPDAKHDLNWRYTSISSAYNPISHGEPQVCITTDASLTGWGCSVDDVNAGGNWTPTEAEHHINYLEMLAVFFALKSVFSQISGKHVKVLIDNTTAVRLVSIKWKIGVTPNIDLFASRLNFHIERYISYQPDPYAMAGKRYISFASSSDANTPSTQARPVTLPFIGAFLSERGISSQASDIIQQSWRTGTKKQYATHLNRWRQYCGARGIDPISASVENGINFLSELYAQGLSYSAINTARSALYTILLVRGGLLLVCKKRKSNKKAVVIEALLFILRQFLAASSEDDKRGRGFLNFADAYGLYSSFFENPVEKADFRDHLLHSDYGLRVFVATVHNTRYVILENDLTDIEWLLKDLEECRVDPLIRFQLTCSNLRSIINSMDTEFDRNALKAVLFATRSRKEIADLGIKEDRAVNFLRKTVTTAAECENALGAAEDLLNIRKKDLFTEKETLLEPAENTKKLEVYEDNNSRKRFEQCKRRLARNLIEKNRVKRRKASRGAPRALDSEDEEFIQKAIEHKISPHGRRHDAVLYVNHRVKKKDFLSIANYNLFRRGKKLIKSATTVLNRGRPKKVSSRAAKLHIGKWLFCAKKPPKTEQEENECTHHQRTHIKNAKCSLFSNDDKGLILSMDDKAYLRPGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L0P7</accession>
    <name>A0A7D9L0P7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">5'-nucleotidase</fullName>
            <ecNumber evidence="3">3.1.3.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A082340</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the pyrimidine 5'-nucleotidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020011223">
        <property type="protein sequence ID" value="CAB4021013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L0P7"/>
    <dbReference type="OrthoDB" id="10014216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008253">
        <property type="term" value="F:5'-nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.150.340:FF:000001">
        <property type="entry name" value="Cytosolic 5-nucleotidase 3-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.340">
        <property type="entry name" value="Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006434">
        <property type="entry name" value="Pyrimidine_nucleotidase_eu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13045">
        <property type="entry name" value="5'-NUCLEOTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13045:SF0">
        <property type="entry name" value="7-METHYLGUANOSINE PHOSPHATE-SPECIFIC 5'-NUCLEOTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05822">
        <property type="entry name" value="UMPH-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01128">
        <property type="entry name" value="C1.4:_5'-Nucleotidase_Like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00003">
        <property type="entry name" value="Haloacid_Dehalogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4021013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="332" mass="37380" checksum="DB2A036FEF58FC63" modified="2020-12-02" version="1">MRKTSSMLGMAAAGAVVLYGAYSYLQRRKEKQTNEIINDIMKEMEDANVFIRDPVGLREKLKAFLEGGAEKMQCIADFDGTLTRGSFKGEKAHSSFAVVARSALLPEDVEKKEKELQAKYYPIERSSDKTEEEKFKAMTEWWKGIFEILEEGGFQKQMIPEMVKNGTSVLREGGLYFLQRLDKEKIPLLVFSAGIGDIVQEVFVQQAADSTSKLLDNITIISNYIKWDNEGNMEGIKGDILHSSNKGEFPAPLNYKDAVKGRNNILLLGDNFGDAEMLNCVENAETSLNIGFLNDNVNELRKNFEQLYDIVVVDPESMTLVSVLLMKLLDKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1S8</accession>
    <name>A0A7D9L1S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Matrix metallo ase-14 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A071462</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="12">Can bind about 5 Ca(2+) ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012359">
        <property type="protein sequence ID" value="CAB4023185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1S8"/>
    <dbReference type="OrthoDB" id="406838at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00094">
        <property type="entry name" value="HX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.110.10.10">
        <property type="entry name" value="Hemopexin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000585">
        <property type="entry name" value="Hemopexin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036375">
        <property type="entry name" value="Hemopexin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018487">
        <property type="entry name" value="Hemopexin-like_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018486">
        <property type="entry name" value="Hemopexin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001818">
        <property type="entry name" value="Pept_M10_metallopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021190">
        <property type="entry name" value="Pept_M10A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10201">
        <property type="entry name" value="MATRIX METALLOPROTEINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10201:SF323">
        <property type="entry name" value="MATRIX METALLOPROTEINASE-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00045">
        <property type="entry name" value="Hemopexin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00413">
        <property type="entry name" value="Peptidase_M10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00138">
        <property type="entry name" value="MATRIXIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00120">
        <property type="entry name" value="HX"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50923">
        <property type="entry name" value="Hemopexin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00024">
        <property type="entry name" value="HEMOPEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51642">
        <property type="entry name" value="HEMOPEXIN_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 12" id="KW-0106">Calcium</keyword>
    <keyword evidence="10" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="6 12" id="KW-0862">Zinc</keyword>
    <keyword evidence="9" id="KW-0865">Zymogen</keyword>
    <feature type="active site" evidence="11">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>4</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>5</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>4</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>5</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>4</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR621190-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR621190-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4023185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="35233" checksum="309BE092A886A9F6" modified="2020-12-02" version="1">MRSIGLSGDIHFDDDEIWTINGEQDTTDYTWTALHEIGHALGLRHSREQDAIMWPWFTGYKADTRLTQDDINGIQAIYGKPTSTVATTTKPKSSVCNVRNFDAIFYHSATRNTYFLKGRYVWEVNEKRKLNKEELISSKWPGLESNLDSAYVRQSDGEIVFFKGNRYWRYRGKRKVAGPTALSRYIKNHRKLRLTKIDAVMVWKGGVVDLVYFFTGNNFWRYDNKNRKIVRKKGYSPYPKTSSTYWHNIPFPVDSILTWKNDETYFFKNGNSHRYRQNKSTRRYNGKVQRNHFIKSCRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LK42</accession>
    <name>A0A7D9LK42_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019996">
        <property type="protein sequence ID" value="CAB4034293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LK42"/>
    <dbReference type="OrthoDB" id="5983751at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="517" mass="60488" checksum="F2D22A4C0D801D67" modified="2020-12-02" version="1">MLEEITGMFLSLFSLFVNATPRVSLREHQPEVNDDDRWQPYINEEYENFHTNEQLSSVLVNRRRTDYTRLDGTSSGRRSYWESIRRSLWTTLTITCAMFVPTAFIMAFLYIDLNTTDLCLEWQYHNNTLPFSVKRFRVIGDNVGVMITNLWFPLTMVVLFGWKEFKLRFLSTFYVGFIFGETIVIYYLLLLVFGVYDTHMYYRYPANMLFFSGIICCSILMLRNIRASDSTLSYSNGRILALISTELVVSSVLALTYKYAIVPFFNGIKQESCKFLVAVMVPGLTIIPAAICKHIALRRSSEVVDPGRSFVLVYFIRGGVILLYRTMQADLKSIWLFIGLSLFSGFMNFLEKATYRIRIKLWRCIISLLNRTACCRRLNELPQDTPHYRRLKADIEIQDMLFEYSTLVLSQGYFVLYFVESFKLSVWSFLYESLTRVAIGIGIDLFFNCLSNFVQIHYYNIPVGRVWTKYWKRHMLANFIIVIVIVSYFSPVLLSVFQARETGTSNRQYIVRNCTFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQ04</accession>
    <name>A0A7D9LQ04_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023288</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024102">
        <property type="protein sequence ID" value="CAB4038347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQ04"/>
    <dbReference type="OrthoDB" id="10056483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12641" checksum="74CB7386FB376FD6" modified="2020-12-02" version="1" fragment="single">RVTVLGETSNPLPVLSGVPQGSILGPLLFLVYVNDLPDCVSSSSSLAMFADDSKCYHPIKCSEDAEVLQSDINAIDSWCKEWQMSLNHSKCGLLRVIRNSQPIHYSYNVEGNLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LSM0</accession>
    <name>A0A7D9LSM0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023738">
        <property type="protein sequence ID" value="CAB4038037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LSM0"/>
    <dbReference type="OrthoDB" id="20872at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="13"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="210"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="30451" checksum="F2F86B086D136C90" modified="2020-12-02" version="1" fragment="single">DSYYNEETRATVSSPRSSPSRISKSKKRQGPRFTPSPGYRKSKRKIVTSSVCLFDAVKRNFVFQIGNCIPQTEVELQLEKIVGHKITKHKIFDAVQTLGKIEKKTIRVGDQKDGCDNRKRLTVLVNISRISKQSASHIWHNIYGSLAQIQPNLGADIVTAIQQTVLENVTPLIEENFDLKQQLMFSAKEDSATNMKNGKAKSIKRNLFSDSDKTHDTDDHCDSTGNSKERKPPSHNDQDQLKFDKQALEVELLEFQKICQFTVVDDRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LUU5</accession>
    <name>A0A7D9LUU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chromodomain-helicase-DNA-binding 1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A015290</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024676">
        <property type="protein sequence ID" value="CAB4038854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LUU5"/>
    <dbReference type="OrthoDB" id="5857104at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034728">
        <property type="term" value="P:nucleosome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18793">
        <property type="entry name" value="SF2_C_SNF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.1440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040793">
        <property type="entry name" value="CDH1_2_SANT_HL1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056302">
        <property type="entry name" value="CHD1-2/Hrp3_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049730">
        <property type="entry name" value="SNF2/RAD54-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45623:SF14">
        <property type="entry name" value="CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45623">
        <property type="entry name" value="CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18375">
        <property type="entry name" value="CDH1_2_SANT_HL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23588">
        <property type="entry name" value="HTH_CHD1_Hrp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="200"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="524"/>
            <end position="636"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="4">
        <location>
            <begin position="246"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="571"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="598"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="636"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4038854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="636" mass="72570" checksum="364526080BA85515" modified="2020-12-02" version="1" fragment="single">RLDGSVRGDLRKKALDHFNAEGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTKGSVEEEIVERAKKKMILDHLIIQRMDTTGRKVLSKTNTAPSANTPFNKDELSAILKFGAEDLFKEGDGERDKELQEMDIDEILKRAETRESDDQPSTMGEELLSQFKVADFVSMDFEEESKVEGEDTPATEQKSWEDIIPETERKTLEAEEEQQKQLELYLPKRPRKSVKKMNIGHHEQEEKKPKQKRRKKATSSSGDEFDENSKKKRGRPRTVKREDIEGFSDQEIRRFIKSYKKFGRPMTRLDVIAVDAELEDKTYEEIVRLANAIHDGCIKEMKEYDERLKQDPDFDGKKRGASLRIAGVSVNAPSLLKHETELEPLADAIPTDPEERKKYRFTIPAKSVHWDIEWDVKDDSMLLVGCYEHGLGSWDTIKDDPNLSLSKVMPPGNLKPQDKHLQTRAEYLIRLLKQDGIRSKAEELRQSTEKIKKQIKKLEKVKITKKKVAPKKDGEKKKKVKTSKKSLADQNLAPVPGADKGDDQGPTQNATENVKEENSHEESSEQKNEKPKKVRKKTEKKNTTKPKERKASEGEENKASGEVPSHLVVDMDQTTFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LYD9</accession>
    <name>A0A7D9LYD9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">QRICH1-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038168</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025138">
        <property type="protein sequence ID" value="CAB4039264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LYD9"/>
    <dbReference type="OrthoDB" id="5988392at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042838">
        <property type="entry name" value="KIAA1958"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963">
        <property type="entry name" value="SIMILAR TO RIKEN CDNA E130308A19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="QRICH1-like" evidence="1">
        <location>
            <begin position="20"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="24140" checksum="8A489EE1773C6B72" modified="2020-12-02" version="1">MYDINVIKRYFESIYETREIENIPAKELNVQLAKFFMNVRKRNGSVYEPTSLKDFQRSLQRYLNDKSSTMNILQDQVFAKSREVLIAKKRELVQQHAKGNRPQACRELTTAEEDKFFELGLFGKHDPEVLQRTVCGFFLFISAFERQQQNLSYFNQSTVEGMFSGATFKRSKAVISTFFSTRAKVRSELQKQLLPKKACYLERWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M469</accession>
    <name>A0A7D9M469_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RE1-silencing transcription factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012264</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030891">
        <property type="protein sequence ID" value="CAB4042818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M469"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14805" checksum="65B3600B3680C817" modified="2020-12-02" version="1" fragment="single">QDTQSPFAQCTDCSFIASTQGHLGIHRSKMHHAEFPDHVKSVNIVRLFPEGKSYYCCLCNNIIGSFVNFKRHYVNKHKGISLNISAKCTICDRIFPENRGAGVHLQHTHQIGKNDSYPLSPTPEMSYVDLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MEU6</accession>
    <name>A0A7D9MEU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042521</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039876">
        <property type="protein sequence ID" value="CAB4045509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MEU6"/>
    <dbReference type="OrthoDB" id="6778351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF19">
        <property type="entry name" value="ZINC FINGER MYM-TYPE CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="18422" checksum="106D8211568DEAC4" modified="2020-12-02" version="1" fragment="single">LCVTRWSSRVDSVRGVRDRFVDIWKRLTVVLLTSKDKKERDEAVGIKKNIAKIDFIINLVLWERILSCTNSASKELQSKSVDLSAASRLLCISLSELRYLRNSWETVRMTANALAASWGIPIEFEKRRKRGIKQFFDELASDSRIEDSERAFKINNWQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MFK3</accession>
    <name>A0A7D9MFK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Tetratricopeptide repeat 28</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A007345</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042002">
        <property type="protein sequence ID" value="CAB4045796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MFK3"/>
    <dbReference type="OrthoDB" id="5986190at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001965">
        <property type="term" value="F:G-protein alpha-subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005092">
        <property type="term" value="F:GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000132">
        <property type="term" value="P:establishment of mitotic spindle orientation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052386">
        <property type="entry name" value="GPSM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954:SF1">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4045796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11623" checksum="0AFEE4260500B4B9" modified="2020-12-02" version="1" fragment="single">MQETRAYLELGYIYKLNNQFETAIKYYEQALKIVKERKDQVEETMAYLGLGDVYTLNNQFETGIKYYEQALEIAKELENKQNRNMARNAIEELSLRIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FMR4</accession>
    <name>A0A6S7FMR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084496</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000148">
        <property type="protein sequence ID" value="CAB3978867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FMR4"/>
    <dbReference type="OrthoDB" id="5981790at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35450">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35450:SF2">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="389" mass="45181" checksum="CC4B111D37232E01" modified="2020-12-02" version="1">MRMKVYIKFWSEIWDNGIEHNKDSEWLHEMKQGIGYLNQNDLKINEEDITKQCKKIPNWKAPGLDGVQGYWIKKITSCHQRIAEQLDEILNGKAELPQWITYGRTVLCLKDPSRGNAVDNFRPISCLPLMWKLMTGVIAESMYIFLEMNDVLPNEQKGCRRKTRGTKNQLLIDKLVLRDCKRRHTNLSMAWIDYRKAYDMVPHSWIVECMSMFKIAANVRTFVESSMENWKTELTSSGESLGNVNIRRGIFQGDSLFPLIFEMCMIPLSLILRKEKVGYEFRGKELKIKHLLFMDDLKLFGKNKEQIDSLVKTVHIVSKDIGMEFGIKKCGMLVMKRGKIVECNGIQLPDEETIKSVKEDGYKYLGILELDKVMEGEMKRKFVKDTGGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FV36</accession>
    <name>A0A6S7FV36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000363">
        <property type="protein sequence ID" value="CAB3981223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FV36"/>
    <dbReference type="OrthoDB" id="6159421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="11"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17122" checksum="BAA1AA3041C058D0" modified="2020-12-02" version="1">MSDSTSDSDDTTTATYLSDSNDLDGSSNPKKAKVMKEKFPFIDKVSDDIYSFYCNICKRSVKCSHMGITNIEKHVGNQMHIANVKAARGQRTINFPRNDSPLIEKTTRAEVKIATMLVKHNIPLAVVDELTPLFQDVFSDRTFHQGEQKQHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVJ3</accession>
    <name>A0A6S7FVJ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058289</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000277">
        <property type="protein sequence ID" value="CAB3980299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVJ3"/>
    <dbReference type="OrthoDB" id="10070846at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="22663" checksum="223E42F418217794" modified="2020-12-02" version="1">MEGLFQRKHNRLSYEEAVMVEKNRKEIACRITHVIDCEAYTCKKKTFLREISVYRVKTGECSSFQVFMPFVPFNERNYTIDYQIKKIHGLPIVRKRLTDDFYTLKESIAFLTDEFMCNADLVAYKGGDIERILLNNMGVRCINLEVLTCPKYIDLLTIFGQQQECCPYHLGNHYHCSKHEVKMFAKFVYLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXQ1</accession>
    <name>A0A6S7FXQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC111337880</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011006</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000733">
        <property type="protein sequence ID" value="CAB3984388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXQ1"/>
    <dbReference type="OrthoDB" id="5948924at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="421"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="423"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="544" mass="61794" checksum="DE6E3FDA8518AE29" modified="2020-12-02" version="1">MEVKIHIESECPVPYQTSDLKINLNNVECIGDLKKKLQPLLSVAACDMSVDHKTRQELENREKISNLYVREGDTFIVKFISVCNLHFFSEFLDDMRAFVKEVCEAFSDIDWNGLLEVVENFYEAVSEGLEICSLEMFSPWKSKPTNANKHYFVQEGGLDLLATIYNFASKKRCPLTICERDLQMVRYFNRGQNELEVSCLRCLWSLSEIKEDRQMVLRTIGLEPFIHSLLKVKADIDDDVGGIAVCIRVNQASMGCLSQYVELPDTQHILAENQEVLSKLLWLTSNDSDTYQKVVAANTLFCCSNHPKAARKIIENQCYRLVLEKAQGLELAREDLSALPFTTAVAYSFCLFLVNIQTLPEENLLPYDEMQQINQVLEAFLHVVTPSEIGRFEAKLGYVWITLIPFLQLALAGPSRPLGTENEGLQTRSQVSVDPRSEIGTQPGERSCDAEISNNRGIGPYNFSPAEKIGLFCLCHLANAPENRELFKKEKLEDYLICVCWFAQRCPEVADLTPKLDGFERLEPPRLESIAKAYLSKCFGEKIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9M0</accession>
    <name>A0A6S7G9M0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024149</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001361">
        <property type="protein sequence ID" value="CAB3988658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9M0"/>
    <dbReference type="OrthoDB" id="7911103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46601:SF2">
        <property type="entry name" value="UBIQUITIN-LIKE PROTEASE FAMILY PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46601">
        <property type="entry name" value="ULP_PROTEASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="428" mass="48420" checksum="2E05CBD63A47CE93" modified="2020-12-02" version="1">METYALFCKEYPNKIGKSKFAELRPKHVLLSSKLPHSVCLCKYHENFINAVNILHQVSPSVPLYTNEFPQSCLCNPVKRECWMNQCEQCKDGKGFRNSYPLEENGDVKWYVWKTDSSNKLVKNVEEGTTEELYTHICSIIPHFMAHCFTKRMQAEAYNKERKDAEADSESLSNAAFLQVDFSENYTCVSQDEIQSAHWKQSQFKNRFIVAALKSLQDKHKIQITWNYFATSHGKGPVDGIGGAVKRQVWITVKTRKHIVCDAKSFVVAAEDSSNVKVVEMAASEIEESNTSLNTKEVFEDASPIPGIAAIHSIKIGNAGKIVGRALVEEETDTPRCGDEGSNASVNEELCQIEVGDWYTVEYEGKIYPGEVKSVTADDIQVSVMVRAGKYWKLPTILDEIFYQQDKFVRKLNAPVVVNSRGNFQFSDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBA1</accession>
    <name>A0A6S7GBA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001022">
        <property type="protein sequence ID" value="CAB3986489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBA1"/>
    <dbReference type="OrthoDB" id="5988335at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955:SF66">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955">
        <property type="entry name" value="RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="14672" checksum="926D3CB36E133390" modified="2020-12-02" version="1">MNVIKTEHTYEISSYYLWTDNTTVLQWIRSHSDRHPTFIANRIAEIQDNSDPSEWRHVPGRQNVADDGSRGLQLANLDPECRWLNGPAFLTLPEEFWPVDIAVPQEVSLATEVTSSPGVNDVSKDSLHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFJ0</accession>
    <name>A0A6S7GFJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sarcoplasmic calcium-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A084867</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000681">
        <property type="protein sequence ID" value="CAB3983970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFJ0"/>
    <dbReference type="OrthoDB" id="427950at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028846">
        <property type="entry name" value="Recoverin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23055">
        <property type="entry name" value="CALCIUM BINDING PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3983970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21302" checksum="E06ADF8C27AF9DA5" modified="2020-12-02" version="1">MSNLTDKQREFHLQKMRTRFNRLDLNQDGFISREDYELMATKLQEYGKLDEEKAERTRNAITSVADRMGLKPGVKIPAEEAAQKASKGFLSMTHDQQLASIKTFYPIFEALDLNNDGSISLEEFKVYFRIIAPDLSDADVTHTFNMIDSDRNGEISREEFMAAGFDFVYGVEETEISKVFFGPLMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GGP9</accession>
    <name>A0A6S7GGP9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023606</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002078">
        <property type="protein sequence ID" value="CAB3992574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GGP9"/>
    <dbReference type="OrthoDB" id="6134481at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="9431" checksum="949F5E5E160CBA35" modified="2020-12-02" version="1" fragment="single">EICNRSVRMLSKPWGSNKIHKAMERASTAAAGVQQIVKRLNKVSDVKRVSQAHIHKSVTEDEVLTVQDLRKIKQFERKPGKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GH36</accession>
    <name>A0A6S7GH36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">E3 ubiquitin- ligase DZIP3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A045888</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000728">
        <property type="protein sequence ID" value="CAB3984351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5953391at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041249">
        <property type="entry name" value="HEPN_DZIP3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058056">
        <property type="entry name" value="WH_TANC1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039:SF17">
        <property type="entry name" value="FUNGAL STAND N-TERMINAL GOODBYE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18738">
        <property type="entry name" value="HEPN_DZIP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25521">
        <property type="entry name" value="WHD_TANC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69322">
        <property type="entry name" value="Tricorn protease domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="DZIP3-like HEPN" evidence="2">
        <location>
            <begin position="39"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="3">
        <location>
            <begin position="239"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="domain" description="TANC1/2-like winged helix" evidence="4">
        <location>
            <begin position="515"/>
            <end position="613"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF25521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3984351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1411" mass="162048" checksum="337DF2F181692CB2" modified="2020-12-02" version="1">MPRSVLESSEEKIYGFKLIRLIVDGGTEALRNIFLNIHPGNLQSILSIHHPTLQRLFKIKKKIITQPQWDKLYPHTPKIPNIKEFDITLLVILLRNICGISPPSTGWNVMPHPADNSREADIVRIKLFRNNCFGHVHRTAVSKSDFEADWAELSSALRRLGFGQAEIDRLKTEECGEEEVDRVRKEWSEIGREIVTKLNELEKNLKQGKFYTDDIISECLHWCEFKKEIQLLHEKYTVGTREWVFQQVSTWLNDKLSDNRAFIITGQAGMGKSIIAAVICRRFPKQFGACHFFKYDNSRYNNPTFLLQSLAWQLCSVFTEYRRNLVVKLSGNKGKILGNENIEGLFSMLFEEPFTNIPDPGKHFLIVIDALDECRQDEKHNLVDLITKHFHNFPRFIRFLITTRSEENIAGGLRELNPLFLKSDDERNLNDLQLFFDNTLKTTMEHVPREKLVKKLVEKSEGLMLYASFLCKLFEDSSIKTKIETLPQSIEDIYKSYFIRLENELKILSIDEAKFMSLLTVIAVAKQPLPLTLIERLLTSEKDLLSGKKLLPKLVSCISSLLVIKENCVSFFHKSVKDWLVKTNHRFTINEKYGHKILADICAYQMNTLKTNEVRFTYDDFAVKYSLQYGIPHMIQAEIQDMQSQSKLLDCVTDLEIVHACICIDVYITLNNLANLENHTNMCHNFNENVLGKIKTLISIIRKFIYILKDIPHSFFQHVVDEKHEKLSSEATVLLMTRYRGLAYFNSVDDEENIKSALIGRIFTKDRVLDVDISPSEDFLICAYSEGVELFSLFNFKSLWKIDEFVVEMIYHPPADLAGIYYGTPPSIVFHPFKNVIFPGQLDRVLNLEGKFEPGPLTVEETNCKFTNCSYSHDKSKMATNYGNYLTVWNLLDNNKITRLLCRSKLYSILFSANDRFLATTNVDELCIYDTENSYCMTSRIYDVLDDPPFLISPYNSDSWYCSGEIVKYDLTRKPVSKRYKLLPKNARAAAEFQAFIESDDPRRFHTKTYLNIFVLRNGVAVAYWCYQHDLNMLSVTDLIQDFTLMQKSGVDSFSRCSISVDGKYIYKSSQHNTLGVPYGSFDIWMLSCSQCVKYQNVCQFKHAFTPFLPVTDGIFFCGEVSEHIGYDSELVESTPELWNSEVTERLFSFPELTGTSKCLSVGEDVIACVLKSQVCFLNVRTNEIVTSIPLTKHRSRSVPYPFESKVEVIACSSQYHVLMKNNKGTLLLQGENNFQPLPLLGLITSACFSPNGQLLAFATSGKRENRLYILDTSTLKIICEFSLYSPVSQMQLHFLDNELLLCKRFKSCLCLISIKTCDVLTCINVGLSDIPWIFSVSRKTGAIIVYSTNYVKDKEFKLIKLWLPHERKDVNELQCSCSIDAEGGTDSLIDMYSFQAAEIYSSVVSSCSIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GI60</accession>
    <name>A0A6S7GI60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001884">
        <property type="protein sequence ID" value="CAB3991598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GI60"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01670">
        <property type="entry name" value="Death"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.533.10">
        <property type="entry name" value="Death Domain, Fas"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011029">
        <property type="entry name" value="DEATH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000488">
        <property type="entry name" value="Death_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00531">
        <property type="entry name" value="Death"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47986">
        <property type="entry name" value="DEATH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50017">
        <property type="entry name" value="DEATH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="27016" checksum="A636564EB0D02607" modified="2020-12-02" version="1">MFFVVIWNFKLFTGSQSTGQSYLKGSMPEITDFDDEICERHVPWLAQHLSKDVEKVAMLLEGDSVEIEVIKQGEPQPERRNIKILNSWRNAEIKLGKKPTWEKIRLCLEDETVGRCDVIRALLKEDELGGRVLVWLAPRIAAWFRNYARVLGVPECEIAMSSQNFESVERSCMDVLQRWRRRTRYPKVEDLIQALEHDIINRPDLAEEMREKFCNHEVKDEVLSQLDNLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GN75</accession>
    <name>A0A6S7GN75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075175</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002268">
        <property type="protein sequence ID" value="CAB3993478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GN75"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="26846" checksum="6C578CD93218DBDF" modified="2020-12-02" version="1">MQINSEKFNGVLSAEQSLLNQPEQINTYNCIIDTIKSIETANSNLGICLPGEPFIPETVSVESPLDNSCLIHVQPASCNITNNKLDNKCEINKVKLTEHNMNKDKISKAKVSRSYSRRNLNSPPYCEPLSLKSLGSLPLIEISKPFITQKKETSLENPSNILNDNTTSTETVTQHVCIGQIPADISEFIVLDGDECMSECDNTNNCPFRQSFLERPPPLPHVRRAEWLAHLNLVRRLTAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRJ9</accession>
    <name>A0A6S7GRJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020761</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001408">
        <property type="protein sequence ID" value="CAB3988937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRJ9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00821">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="28842" checksum="FBF9C8DCD98BC0F1" modified="2020-12-02" version="1">MDKSKTILREGYVYREEKLHGQAEVLYCVLKPNTLCFHRRKVHKRHTPLGLLKLEELVVDINDYTNDECSGESSVDCNHNLTRFPWKIVNGEQQVFLYCASLEDRTAWLAAIEGAKKTLTGVINSENFKSNTKENYGNIIEGAREQSELASKVKGSVDNHQLLSSKSVYNSSDTSCELNNVVRTDISKPKTITRIRSHSFSEVEKPNDLILDNEQHTRYLKSKSAPPDNGKRACKTVDKLIHSGLCRQFVRWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRQ2</accession>
    <name>A0A6S7GRQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A076953</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002811">
        <property type="protein sequence ID" value="CAB3996154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRQ2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13468" checksum="55F6C916E0EC6786" modified="2020-12-02" version="1">MASKESFATNEEKDESFGSKEQVIEPYMFEPNQEEHGEASDDSSEDSGSEEDEFDEEFESANAWCRTMLEWLCLCCHEKALEYDEYDDKLTSAQNQEFTCITRPVFVCAKYAIKGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTG8</accession>
    <name>A0A6S7GTG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072993</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001239">
        <property type="protein sequence ID" value="CAB3987830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTG8"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="405" mass="45725" checksum="B812409BD663A366" modified="2020-12-02" version="1">MNTTERKLQPGFRRSRMTSVKGPRTRSVVTFNPTTISPGEELYIKIPKLKPDSCLVPGSLALLFDFKNSNTKSRFNNNLSKLIAKRLQIKVAGETAYDCSGESLYEIYKDLWLTLGDRNKMTEQGLASENLRKLISGDDSGARVGDVNKVADGLLHSVYGSKLRKPIDKIIADHGLYTPFFMNNNPMYILTLPQSDEIMTAQGGEAKGNYKLDNLELEYETIENDTLASEVSRMYSTGRSLSYKHVTHMRTSNWDKDLTIVNENINIPRKSMSAIVLLFTNRVRTDSEEYIYPNIDKVNLIIEGLHKNRFFEEAKRFFCPMCEKSMADEFMSISKFFSNGFALVIDLRSTQDDTTGGGKKIVNTQSGVLLEIKKRATTADVQCNIFVVSDALLNFANRDLSSIQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVB0</accession>
    <name>A0A6S7GVB0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001328">
        <property type="protein sequence ID" value="CAB3988460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVB0"/>
    <dbReference type="OrthoDB" id="5984692at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="23660" checksum="2631635C64EAEC54" modified="2020-12-02" version="1">MSEMQDSTGNAMGFPQLKTCGGFEMMRCTSNCRDLTVINCSWNAKDLHSSLGDGQGKVYLRPIQRSLATSPMVQQSRCEIKEVCQMCNKEVLVRNLREHLWACTEGLDSDESSDPPSVPQSSSVLSSVPQASSSSTAPPSVPEQFSSSTAPPSVPEQSSSSTAPPSVPEQSSSSPVFLKNPPHPLLQRALHIAPPRLHLFHPTTETRRVATVDLTQRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWI2</accession>
    <name>A0A6S7GWI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077962</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001393">
        <property type="protein sequence ID" value="CAB3988841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWI2"/>
    <dbReference type="OrthoDB" id="498125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20598" checksum="5ABE4AA3F0E8AEAF" modified="2020-12-02" version="1">MSMWRANGPIHPVCDTHQRLARMKVVKDVSKPNFGRPFFVCCDRENPCEFWQWGDRQEFPKPKCGHGLNACVRKVKKEGENQGRLFFCCPNDREKSCGFFEWKLDLENPFNQVHFPHVERVGILQSNPALYTYMVAETGLTFTSARENPHDAYAEYIGELPIFSLTKDMEKLSLIDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0I0</accession>
    <name>A0A6S7H0I0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">ATP-sensitive inward rectifier potassium channel 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A076622</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Membrane</location>
            <topology evidence="1 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the inward rectifier-type potassium channel (TC 1.A.2.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001610">
        <property type="protein sequence ID" value="CAB3990150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0I0"/>
    <dbReference type="OrthoDB" id="273257at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034702">
        <property type="term" value="C:monoatomic ion channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005242">
        <property type="term" value="F:inward rectifier potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990573">
        <property type="term" value="P:potassium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034765">
        <property type="term" value="P:regulation of monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1400">
        <property type="entry name" value="G protein-activated inward rectifier potassium channel 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041647">
        <property type="entry name" value="IRK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016449">
        <property type="entry name" value="K_chnl_inward-rec_Kir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013518">
        <property type="entry name" value="K_chnl_inward-rec_Kir_cyto"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11767">
        <property type="entry name" value="INWARD RECTIFIER POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11767:SF102">
        <property type="entry name" value="INWARDLY RECTIFYING POTASSIUM CHANNEL 1, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17655">
        <property type="entry name" value="IRK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01320">
        <property type="entry name" value="KIRCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11 13" id="KW-0407">Ion channel</keyword>
    <keyword evidence="8 11" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0630">Potassium</keyword>
    <keyword evidence="3 11" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 11" id="KW-0813">Transport</keyword>
    <keyword evidence="5 11" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="domain" description="Inward rectifier potassium channel C-terminal" evidence="12">
        <location>
            <begin position="185"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF17655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3990150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="396" mass="44984" checksum="F4D26DC1481C39E9" modified="2020-12-02" version="1">MAGKVKTMDEKHVALIMIDYWQGIGSMATTSNGTQADKDQEISEDNEENLMKANDDNGVIKGSELNEVSQRSKSTISITLNNIKEHVMSTKPKKRRLLGKRGALKVKAYNTDKGGLYFSDLFTTLVDADWKWIIVFFASSFVASWLMFALLWFAVAKSRDPYECLDNVDSFPSALLLSIETQTTIGVGDIRDSRILDAEIRVQLFRTRCTAEGQDIPFYQQDLKCGIDWSDKGSGNNSLFLILPLTIVHVIDEDSPFYEMGPEDFNTSADFEVVAILSGTIESTSMLVEARTSYLGDEIFWGRDFAQVLHEKCWDPHQGKYLVDFSLFHATIPVQLPQVPAKEFYKKNQEDDEVHRIIKTARTASRRIISRNAQQEGLVKRYTELWKRKFTAIPED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HC51</accession>
    <name>A0A6S7HC51_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Nicalin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A019137</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the nicastrin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004187">
        <property type="protein sequence ID" value="CAB4001819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HC51"/>
    <dbReference type="OrthoDB" id="5913609at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009966">
        <property type="term" value="P:regulation of signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03882">
        <property type="entry name" value="M28_nicalin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016574">
        <property type="entry name" value="Nicalin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31826">
        <property type="entry name" value="NICALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05450">
        <property type="entry name" value="Nicastrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF011018">
        <property type="entry name" value="Nicalin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR011018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4001819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="555" mass="62168" checksum="8DE7BDCB5A2BCB77" modified="2020-12-02" version="1">MLEVDLLELFKTFPMCMTVLIVIPVAFLTSPATGAHEFKAFRMQHYDLHGVHYGSRSALVNMEARPITAGTVTRRCIVVKIGELAYDRFKEILEQGAGSILVLLPRNISRYSLEEIQKLQELEEEMLQEEIQPSVYFTEEDSELLQIYDHIKKATTSDQAGSAVEALFDVASTSGYQIVASTSEAKQIKDLVLTNIQGRLVGDGIDEQLPTIAIVTHYDSFGIAPGLTTGADSNASGVVALLEIARIFSRLYNDETTRGKYNIVFLLSGGGKFNYLGTRKWLEDQIENSENSVLNEVDYVLCLDSIGGSNQLFMHVSKPPKENSPGFKLVEAFNEVGGQYPDVNFTLVHKKVNLADEIVAWEHERFSLRRLAAGTLSHFSQPKDSGRTSMFQTKPVNANTLEKHIKFIAEAIARHVYNTSSKVFRSHPEIFSGGMGLHMEFVKTWLSHMTTNPRAVQFITKNHPLLKGLELHLSKYVKEVKRIAIKADKRDPDFVFYDALETTMFAYRVKPAIFDLFLAAGIACYVGLFYLSIMNFPLLIDILPKPAGVLKSKYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKK0</accession>
    <name>A0A6S7HKK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034891</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004778">
        <property type="protein sequence ID" value="CAB4003983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HKK0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="18598" checksum="FA268BA99AB88CCF" modified="2020-12-02" version="1">MEEHGTAQTTFTEGGEGTVNITGPSGSTTVPSVDFVEDPNDLLPDVLNDSFDTNSDDIEDRLSKLEKVLRRPSHSREEKRLRKPGGTTLNDGTEVLMFRSEQGINKCGTQIMKRGKTSIPTYSKNSTALREYKELVRKIREEPSTSTHEGDDESVTTVVDQGAALNNPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HSH2</accession>
    <name>A0A6S7HSH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cleavage stimulation factor subunit 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A012619</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005448">
        <property type="protein sequence ID" value="CAB4006220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HSH2"/>
    <dbReference type="OrthoDB" id="272703at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005847">
        <property type="term" value="C:mRNA cleavage and polyadenylation specificity factor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031124">
        <property type="term" value="P:mRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd12671">
        <property type="entry name" value="RRM_CSTF2_CSTF2T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.20.70:FF:000001">
        <property type="entry name" value="Cleavage stimulation factor subunit 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.630:FF:000001">
        <property type="entry name" value="Cleavage stimulation factor subunit 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000061">
        <property type="entry name" value="cleavage stimulation factor subunit 2 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.630">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.20.70">
        <property type="entry name" value="Transcription termination and cleavage factor, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025742">
        <property type="entry name" value="CSTF2_hinge"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026896">
        <property type="entry name" value="CSTF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038192">
        <property type="entry name" value="CSTF_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45735">
        <property type="entry name" value="CLEAVAGE STIMULATION FACTOR SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45735:SF2">
        <property type="entry name" value="CLEAVAGE STIMULATION FACTOR SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14327">
        <property type="entry name" value="CSTF2_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14304">
        <property type="entry name" value="CSTF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="190"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="200"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="225"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="288"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="338"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="365"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="419"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="444"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4006220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="499" mass="54487" checksum="11B80B31AD9DD059" modified="2020-12-02" version="1">MAVAPERSLRSVFVGNIPYEASEEQLKEIFSDVGPVVSFRLVFDRDTGKPKGYGFCEYKDQETAVSAMRNLNNYELNGRTLRVDSAASEKNKEEEMIAAAPPETNPYGSTVPPSEAPSAITQAVASLPPEQMFELMKQMKLCIQNNPEEARQMLLQNPQLSYALLQAQVVMKIVNPEIAQAILYRQAEPPQPLQSEAPGGHPPPSHIPPNHPDMRGPPGPPDMRAPPDMRAPPDMRGPPDRRPPSDMRGPDIRGPPQDRRDGRGPPDDRGPPDRRGPRDIRGPPGFDRPPDAAEPRRNPDFRGPPDFRGQDRGGPDFRDPRGFDRGRGPPDDRRGPPEARPGPPERPGPPDPRSGPPRAGPPDPRNSRGPDRGPDRGPDRGPDRGPDRGPDRGPDPGPRRDRPGVPPPHIPGPEERFSGPPPHWNKAGPPPAPPISVPAPVVPTSQPNPTAGDVTSQDQEKAALIMQVLSLTDQQIALLPDDQRQSIMVLKEQIARSSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXC4</accession>
    <name>A0A6S7HXC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079547</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006680">
        <property type="protein sequence ID" value="CAB4010116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXC4"/>
    <dbReference type="OrthoDB" id="6022533at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34400" checksum="68C2FD75A2A683C6" modified="2020-12-02" version="1">MAESTSAMADLDWDAIFEIDFVEESGSEGENSDSEDDGLPINEDEEFEEQQQASNKKPLQVNVVEDIKATSSDKAKKTPKRFVVPTTVAGSQSEEIEMTVVEENILRYAVGFVPFSLKKQCSKRKTRTDEFRQKMKCLSALGVDDELEKSQTFLEYTRSWIEKQNRGGLFQLNDAGYLFFRAVERHCRKFLQQTCVPNNGSSDIRELVLKDIYNDNVALQHWAHATAGQPSSVSLQVLQMCVKLWVTIRGHAFAANWVEKFKQSQCAGKKKALRKDLKDLLDLKDYNSVKAWTKHATSFYNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBX1</accession>
    <name>A0A6S7IBX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RING finger 121, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A008012</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007941">
        <property type="protein sequence ID" value="CAB4013600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBX1"/>
    <dbReference type="OrthoDB" id="446635at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036503">
        <property type="term" value="P:ERAD pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040176">
        <property type="entry name" value="RNF121/RNF175"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13407:SF0">
        <property type="entry name" value="FI05221P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13407">
        <property type="entry name" value="RNF121 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4013600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19576" checksum="8193FF9AA7D16BFF" modified="2020-12-02" version="1">MHLEMILILLTTLVVAQILLVQWKKRHFRSYQMVTLCGVWLIPLYFNIRLKWFRMLIIWTVFSLLTAYVVFKATRQPLAPTTPRLVYKWFYFIHKGTTALSLIGYFIIMLTLFGVSMMFTIHPDTAAEVGLLTLFYGLYFGVLGRDFAEICADKMASKLGVSFKNCVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG85</accession>
    <name>A0A6S7IG85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Kinase-like domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A068424</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009221">
        <property type="protein sequence ID" value="CAB4016696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG85"/>
    <dbReference type="OrthoDB" id="10046508at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00198">
        <property type="entry name" value="vWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056861">
        <property type="entry name" value="HMCN1-like_VWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052969">
        <property type="entry name" value="Thr-specific_kinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47763">
        <property type="entry name" value="ALPHA-PROTEIN KINASE VWKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47763:SF4">
        <property type="entry name" value="ALPHA-PROTEIN KINASE VWKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25106">
        <property type="entry name" value="VWA_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="82"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="22"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="37"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4016696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="641" mass="73028" checksum="0A2546E251E98C61" modified="2020-12-02" version="1">MASSGNNRTPHRNRSFNDDDIENRIRRREYSERETYIPSSNAAQHFQTRPDMLPNFSQMQLNDDDTSSQTRQHLAELQAEIAEEEDSATIVRSPPPAPRHGPSTREQIRKSEEKLVFIRARKNEITQLFETMKRSQTVDLCFLIDCTGSMDPYIAQVKTKIDNLVEHCKMTFADLVLKVAFVGYRDHDDEERIISLPFTGDIAYFKSFVSKIRADGGGDAAEDVFGGLEKAGELQWSAPTRILFHVADAPCHGRQYHDASVLDYYPNGDPRSLNAKDLLKILEDKNVKYWFAKLTDKTDKMIIEFTRLMRMPTMLQQVKLQSAEDLMFAVADSVSSSIRDMETTTLAAAAVDAFSRDYNTVVQRPGATRKLKEFAICEIIPDWSLISVENAYLFRKKLPGNMNLADSLKEPLKEECRKRRIQIATQPFAKGTQRIVYYGIDCTYDPSKKVVFKEFKYLGEGLNKLASYKEQMEVQSISAFLALEFNKQKPRGIKDISFTKVVVISLRDRSKPFYCSQEPLIEGPYVKYNSNNGFVNKDEYAASLNAFSHWTYQVTDGYLMVVDLQGVKITSPTGPKFTLTDPALHCKDVTRFCSTNLGPAGMHRFFRTHHCNSICKAMNLQPHRHQPKSSTMTEQGTFALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGV1</accession>
    <name>A0A6S7IGV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016616</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009091">
        <property type="protein sequence ID" value="CAB4016373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGV1"/>
    <dbReference type="OrthoDB" id="5980437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF31">
        <property type="entry name" value="OS01G0873500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="240"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="528"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="528" mass="59299" checksum="E253DC6E1319E9B2" modified="2020-12-02" version="1" fragment="single">MASTGYGPSRESRWSRLTFDGNESNYELWEAKFLAHMRLLKLKDTILPSEEEADATKNEECYAELIQCLDDTSLSLVMRDATDDGRKALQILRDHYANQGKPRIITLYTELTSLEKALHETVTDYLIRAEKAITALKNAKETLSDGLIIAMILKGLPDSYKPFSIHVTQSASEITFAKFKSMLRSFEETEKLNTKPKVDQVMKAEFPSQIMTCYGCGKREHLVRECPAKSEKKWCNYHKSTTHSDGTCRSQQKNKDQAKQVSEKENTSKDEHSFAFKVNDEATGKINRMGMLVDTGATSHIVTTDILKQIDMTFKPSKHYIELADGTRASNIALKRGDVEVFLKDTNGKCVKTVLKSALYIPSYPQDIFSVKAATSNGAELRFAQDTGELTLEDGTIVEIEEHGRLYYLTSIDSHENESVSEVDKVNLSYDINTWHEILGHCNFEDIIKLQGVVKGMKFSGKIESSKLGCNTCVEGKFVNSRSRIPDARSQKSLEKVHVDLAGPVSPVSREGFKYCIAFTDDFSGSVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IK78</accession>
    <name>A0A6S7IK78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005623</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005451">
        <property type="protein sequence ID" value="CAB4006232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IK78"/>
    <dbReference type="OrthoDB" id="10297722at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="17998" checksum="436AF978C1A08FC3" modified="2020-12-02" version="1">MTHQGPNYLRIKETGITADTSSFTEDRLRGEAPTKGFKWIDRFNQHHSVKVTSSNPQVTVMFPVSNREVRFRATGIDNPGDELRTGCGTEHRWCEATFLYQKSGPQFWGGEHVWGKFTFYEDNDISSKCTDWNRWERAVDTAQKGVSLAQSVKSLGGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IL77</accession>
    <name>A0A6S7IL77_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Bromodomain associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A076192</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009871">
        <property type="protein sequence ID" value="CAB4018133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IL77"/>
    <dbReference type="OrthoDB" id="6021257at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000124">
        <property type="term" value="C:SAGA complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046982">
        <property type="term" value="F:protein heterodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06847">
        <property type="entry name" value="HFD_SUPT7L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.20.10">
        <property type="entry name" value="Histone, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006565">
        <property type="entry name" value="BTP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009072">
        <property type="entry name" value="Histone-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039460">
        <property type="entry name" value="SUPT7L/Spt7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28598">
        <property type="entry name" value="STAGA COMPLEX 65 SUBUNIT GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28598:SF1">
        <property type="entry name" value="STAGA COMPLEX 65 SUBUNIT GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07524">
        <property type="entry name" value="Bromo_TP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Bromodomain associated" evidence="6">
        <location>
            <begin position="164"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="43"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4018133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30134" checksum="65499D6B1472B8E5" modified="2020-12-02" version="1">METNAESYWGEVVEETPSTSDINFDELFKPEAAECDELKLHQVSSKENVSKESSNQNLASIQPPLDSHGQNLLLHSIELKHHIRKMMLMKMAAQHQQAGGSKNENLPQLPAAPPPPKKYCGKNGIYIRPHQRGFLSNPTEVDTTSAFITGHGSSPVELDSNALRCLTYKAIAAICCHCGYESAHDLTLDVLSDVLADFLKRFTKLLRIAADAEASQRESRFPNVLEYVLQETGAGGLNTIWQYWSNNVLDNALKLQQEDHRLMADYEKLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IML3</accession>
    <name>A0A6S7IML3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010884</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010223">
        <property type="protein sequence ID" value="CAB4018926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IML3"/>
    <dbReference type="OrthoDB" id="5282002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="320" mass="37362" checksum="2EFF91A30350FF3D" modified="2020-12-02" version="1">MARPAGCRYIKHSKAAMNADSGSFVGKINYYTCIPQEHVRTAQKYMEDGIFQRTQNCSYAENPTLTGPHYLIKNGPFTYCCPSYVFPFIGWDYAEVKKFKHTKSLVIMYGNYIESKLDSFKEKLSSKQVSFDIILGDCMKIEEFPNKEMTYDRILTSNLMDYILLPELLRICYGKLNRDNPYATLITESLNWVDFCPDADVSMMSFTTPAQTTHFSRIVMQDTNNPVFANDGGTTFREYLDNSRELEDYLRALFYVYHKRQETSNSSKLPILKELGNEFQLRLRDGFRNENRIVFFKQAVNRRRVTMITGLERYMEWVAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IP84</accession>
    <name>A0A6S7IP84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058667</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010425">
        <property type="protein sequence ID" value="CAB4019363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IP84"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17650" checksum="F9818893DA135D48" modified="2020-12-02" version="1">MAECNLNCSPVVKCKKCTQAKRIFEGESCALLYNDDEDWFDDEDEEFVFTDSNQWFENAFESGIKEREDMQWGYLQVKQKQLDGARKRSKTILTKNKGDIICTNTKQYVTYEMFAESRKKALETIKEQRDILYKINTAENLLTNLLKKQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISG5</accession>
    <name>A0A6S7ISG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005059">
        <property type="protein sequence ID" value="CAB4004958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISG5"/>
    <dbReference type="OrthoDB" id="8948380at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.395.10">
        <property type="entry name" value="Adenoviral Proteinase, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039598">
        <property type="entry name" value="HMGXB3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17609">
        <property type="entry name" value="HMG DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17609:SF3">
        <property type="entry name" value="SAP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="192"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="195"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="475" mass="53966" checksum="9AA3180F3F706FDC" modified="2020-12-02" version="1">MVDVANLVAAHGNRRKKEMFSPHNGMLVDPTSENVERAKTHQLDISLDWLNIAHETAVGMFWWVDITHETGNQQPTGHPITGSNDHFCLFYRFHESNPRKEREILQRVTHVRQLNGLINTQRQEQLYNVFNRDNRFLNSMTPVNHIFLFRSNIDTLNERINERNIHEIEQLSSFTATEGQFRRTVLDKTKRISVTAPTTTNTMPSANSTQGSDTSDAVQSEAEASNTKESTEIKQPPPFIKTSYPVHLIDCPEESEPNVFSSRPPDKPSDPDVTCTGKRSGKNESQSVEEEDFWIKELCLKLSDKRILEKGHWANDRIIMAVFKILRLHPCTAELGGLQDVIPAVKYGFTKENRKHFVQIINVRGNHWITLSNIKSCVDEVRIYDSFVNLNRKGKEISYPVDVEQCVCRIASPLGFVKMVVTNVQQQKGGSACGLFAISNTIALCFGKDPIMLKWNQGMLGPTLMCLLIEISHHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYZ8</accession>
    <name>A0A6S7IYZ8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycine N-methyltransferase</fullName>
            <ecNumber evidence="3">2.1.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A020599</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>glycine + S-adenosyl-L-methionine = sarcosine + S-adenosyl-L-homocysteine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19937"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57433"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.1.1.20"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:19938"/>
        </physiologicalReaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the class I-like SAM-binding methyltransferase superfamily. Glycine N-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.20" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020005573">
        <property type="protein sequence ID" value="CAB4006688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYZ8"/>
    <dbReference type="OrthoDB" id="3647at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005542">
        <property type="term" value="F:folic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016594">
        <property type="term" value="F:glycine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017174">
        <property type="term" value="F:glycine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042802">
        <property type="term" value="F:identical protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051289">
        <property type="term" value="P:protein homotetramerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006111">
        <property type="term" value="P:regulation of gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046498">
        <property type="term" value="P:S-adenosylhomocysteine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046500">
        <property type="term" value="P:S-adenosylmethionine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901052">
        <property type="term" value="P:sarcosine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.150:FF:000113">
        <property type="entry name" value="Glycine N-methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.46.10">
        <property type="entry name" value="Glycine N-methyltransferase, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014369">
        <property type="entry name" value="Gly/Sar_N_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16458">
        <property type="entry name" value="GLYCINE N-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16458:SF2">
        <property type="entry name" value="GLYCINE N-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000385">
        <property type="entry name" value="Gly_N-mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51600">
        <property type="entry name" value="SAM_GNMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0290">Folate-binding</keyword>
    <keyword evidence="7 12" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="8 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="13">
        <location>
            <begin position="60"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00048261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR000385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4006688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="34181" checksum="89C19EA0152FE8DE" modified="2020-12-02" version="1">MVDRTYRTRTLGVAASGVPDQYADGKAAKVWEFYIGGSRNRTEQYREFMCDLLRKRGVQNICDVACGNGVDSILFLENGFKVMSFDASDKMLKYALKTRWERRKEAAFDNWVIEEANWLDLAENHGNAEFPEGGFDAVICLGNSFAHLPDLTGDQENHRIAIRNFHEVLKPGGFLFIDHRNYDSILDCGKAPHRNVYYNSDRIIDIKTSVLHVNGEPTMITLDYIVDGTDEKKIQSGCTEKDLSKFRLSYYPHRLAKFDELLEGVFGKDTEHVVWGDFKPKGEIETPAYFIHMIQKKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7W0</accession>
    <name>A0A6S7J7W0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086528</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014033">
        <property type="protein sequence ID" value="CAB4026141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7W0"/>
    <dbReference type="OrthoDB" id="10068389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="681" mass="79228" checksum="67A86A043D5F628D" modified="2020-12-02" version="1">MKHLDEIRLILNNNALDILAINESKIDNQISNNEIHIDGFNIIRKDRNRFGGGVVLYVRQNISFSDRIDLIPDELEMVCIELSLPYNKSLLISTWYRPPNSLMNKFDYWASFLAKCDNEDKELILIGDLNCDVSKTIPDPHTCKLQFLCSLYQIDQLIKESTRLTPKSATLIDLILTNRPENISRSGVIHLGISDHSLVYAVRKFTLPNGRQKIRQVRNFKNFVENDFIRDVSQLPWEMVYQFGDPNLCWQVWKSLLLDALNRHAPLRHKRIRNNPVPWINPQIKELMRKRDYHKKKAIKYDSESQWELYKTLRNEVNINMRKAKSKYFCDKIQASSQMGDSKSGWAWINSLLGRKHKNANINELKVNDDIISDDKSITETLNEYFINIGMKMAAESACQSTDALNDQVIYESTVLLPKENFHFADITIDSVSKRLQKLNVSKATGALIQMCDQWLQDMDEGKINGVVFLDICKAFDSVNHEILLEKLKTQFGIHDIELKWFQSYLRNRKQVCSVNDQTSSARTIICGIPQGSILGPLLFLLYINDMPDILERTTPCLYADDTQISSSSHDYDTLIDNLNMDLSSIHKWLAKNKLKYHRKKTKVIFNEDLKVLDLNDDYDLSVLIDKYENTLKETLQQHAPQKRRIITLRHLPPWYNEEIGQEKNKSQEARAPLARIWIMY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8P6</accession>
    <name>A0A6S7J8P6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073759</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015475">
        <property type="protein sequence ID" value="CAB4028416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8P6"/>
    <dbReference type="OrthoDB" id="5982225at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="419" mass="48106" checksum="EE557DECCAEC6ED5" modified="2020-12-02" version="1" fragment="single">CHMPCDLSEWATPINNTFCPVSRIFLPIWLGYQRLVFGVTGPENVSQVRSFLGLKSHKWKWTEQFLTHYDTTLPVKIAYPSPRRSATGFEYDIEYKNTKEHCNADGLSRLPLPMTEKEDTAVDAADVFHATQLNILPVTSESLKSELTVHQGCILWGMRVVIPSKLQERILRELHDSHLEPKDAIQAKTIEVLRNLFARFGIPEQIVSDNGPQFVSEEFRSFMKSNGVKHITSAPYHPATNGLAERSVQTFKQALRSMEESSKPIQEKLAKFLITYRNTPHSTTGESPAQLMLGRPIRTRLDLVKPNLNRKMVIKQQEQSRKSASAKNRATRQLEVGDMVMARDYRGNLKWRSGKVIERIGPLMYKIEIPSMGEIKSRTRVVCSLRQEDTFCHIRTFVNTGHELWLGITRIRRYIELLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIN6</accession>
    <name>A0A6S7JIN6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029611</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020009165">
        <property type="protein sequence ID" value="CAB4016552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIN6"/>
    <dbReference type="OrthoDB" id="5969700at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="224"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="410" mass="46879" checksum="46916FF62CCE08C6" modified="2020-12-02" version="1">MKSLGERDYAAQETMHHLLSLKLHSTSFKVMPVILNGSRRVRDTANIEEGESCTDYSLLDVYANREQYESSQNIINMNFFQFATKYKVVNDELTKLPENIIPRIFPTYSPNPKDWFDKLQAVIQTQEAEGEPSEEQETTREEWMILSDLNSPFDNSEQTPESTYDWHLDRANYSEQQIQEMPTWIKTNKEEYTIDEQYDVVDINSFSEMQKFAYDIVKSHFDDISSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRVVTVHSLLKLHIESRGNKDLTGKSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKHCKQATGSNDKVFGRKSLILSGDPGQLPPVADKPLYHARPSNSVGEQGYQAYHMFDKVVKLTVNQRMQGMTSEQVQFRDFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JM24</accession>
    <name>A0A6S7JM24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A044363</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009624">
        <property type="protein sequence ID" value="CAB4017612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JM24"/>
    <dbReference type="OrthoDB" id="5982029at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4017612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="47433" checksum="E60E9B9941F6486E" modified="2020-12-02" version="1">MEDASLLLLYYKYQRMRDSARRRSLARRRRRLFLLLQRNNQNMMFFQYVRTISLAMMMIARMVGQINQRQYWEIPRPRLGWFEVIFGDDCQAGYWKEHFRMRKETFLRLVDFVTPEIAKEDTIFRDAIPPHKRVAIALWRLAVGSSFRAIAAHFDVGKSTCVKITKEFCQALNKLSRHYIKFPTSCDETTRALALFQDDCKFPHAVGSIDGTHIEIIAPEEPFDYFDRHHRYSVILQGVVGKNLTFLDTAIGYPGSMHDARVLRSSDIFQKAQNGDILTEPLASINGVQVRPLLLGDGAYPLLPWLIKPYPNGAILNCSQRRFNKTLSSARSIVERAFGILKARWRILLKRLDNRFENISEVILSCCILHNFCQEAGEEFDDEEILRRIISIDREYLETRRQENIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2G5</accession>
    <name>A0A6S7K2G5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Zinc finger 236 isoform X8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A047201</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008800">
        <property type="protein sequence ID" value="CAB4015668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2G5"/>
    <dbReference type="OrthoDB" id="3565419at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051061">
        <property type="entry name" value="Zinc_finger_trans_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46179:SF13">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46179">
        <property type="entry name" value="ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13894">
        <property type="entry name" value="zf-C2H2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4015668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11576" checksum="1F0B9C11FA60D3F5" modified="2020-12-02" version="1" fragment="single">CGSEIIQPQDLQEDFVDDNTGRYVCNKCNKKFSTFVKLSRHIARHHGNDGKYQCGLCQELESTEPTGVGYVCFVCNAVFDVARDLEDHMVTHDSRLNIFAVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6T1</accession>
    <name>A0A6S7K6T1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026592">
        <property type="protein sequence ID" value="CAB4040297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6T1"/>
    <dbReference type="OrthoDB" id="10065153at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="212"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="31310" checksum="2FEEB860CA2A29E7" modified="2020-12-02" version="1" fragment="single">MSINKVVYAYNCTVNNATGFSPFFLLYGRPPRLPIDLLFGLSPTTTTGNHTEYAKRWKGTMKKLMRRRWQTAENLQKYGRSITTRRFVVVRNLSERGGPGKLRSHWEDQIHVVVERKGEMPVFVVKPEGLATNKKRTLHRNLLLPCDFLSPDNSMDLTPAVKPQRLRNERKAQNSGEVHADQPTTTTENLAEPLATTTETCEVLDAGLQEQFDDNHGQDTDEPIKEPATRTDTAETGDPTGEAVLRRSVGTRRPPNMLNYDAMGNPTECPPYLSSVQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8J7</accession>
    <name>A0A6S7K8J7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110040203</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027658">
        <property type="protein sequence ID" value="CAB4041027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8J7"/>
    <dbReference type="OrthoDB" id="5972340at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1090.10">
        <property type="entry name" value="Cytosolic phospholipase A2 catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="FabD/lysophospholipase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="740"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="740" mass="84823" checksum="3E4D88EB99E44E94" modified="2020-12-02" version="1" fragment="single">TRSVRPQILCLDFDLKNNIMVLLTDNLILLSQFSFTIMAGKKKEFGVAFSGGGIRSAAFCSGVLRRLITKKKEPDFLSCVSGGGYTGSAYVQWKYHKGTQPGWTDAFFDHMRARTGHFCNWQDWFQGIVDSCVLVSLLLFVAIIFPIVGWGSFACPIAFVVNLLYGHFLDGKLCRTNAGGIDCRERTYLFFVSFVIFIAFHLLEYCFDGSRDNKNYLKMKAPKVVLKLGQFFSGATFAFTFFPWFINDYLQYTDLVIRIAIVAFTAVFWFFVPLLRKYSSLVILIYAYSFVVYWHVYKGDLFTVKYTEKRFRNGMIGSLVVLGVFSVLGDFPLRLVHIYNRWRLQKAFYTDKEEQCPPQDNPGHTHNQTNGNRSRALTLADLKNVKPQYISSVVVNGWHREYERKYSLLTMSPRGWREFDSPSKFQKQDYPYNRAFDCGFCLSGRAFDQLYFQKSNSLGVARGVVPSEQSIKNPLFIEYACSQSKLYFKILKTWKNWESIHISSIPFPFLRTSFPIPSGQIPDPLLATLDGHNVEIGSQIDVSNVDIRSSTSQPFFYQISTLKQRRKLETVVFLMILSELLKHTILNQGRRKDVKECEGILRQAIVLFLKLDDRISCKFGNGLVNNLKQEAQCFIRYKTLALRFRVLYLIKHFCMSVIVKQPTTVVQVEDDHDFGNKLKPSDIKLSSAMAMSAAAVSPYLGKNEESERQLTHILTVCGIEMAANIVYDMESERNEHCCGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAQ4</accession>
    <name>A0A6S7KAQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A071085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009574">
        <property type="protein sequence ID" value="CAB4017508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAQ4"/>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF23">
        <property type="entry name" value="ZINC FINGER PROTEIN 729-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="340"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="437"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="744"/>
            <end position="776"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="806"/>
            <end position="892"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="989"/>
            <end position="1046"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1068"/>
            <end position="1093"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="437"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="463"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="806"/>
            <end position="887"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="989"/>
            <end position="1031"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1093" mass="127570" checksum="34A2CE0AE838AD4D" modified="2020-12-02" version="1">MIRFHTLRTRFFILRTKFLIVRTRFLTLRTRFLTLRTRFLTMRTRFLSLRTRFFTLRTRVFTLRTRFFTLRTRFFTLEDKVLYSEDKVLYSEDKVLYSEDKVLHSQDKFPHAEAKVFLSEDKVPHSEDKISHSEDKVSHSEGKVLYFEDKILHSEDNVHHFKDKISYSEDKVSLSEDKVSQFEDKVLHSEEKVLYSEDKVLHTEDKGLHSEDKVPHSLDKVLHSEEKDSHNKDKVPHFEDKVLLSEDKVLHSEDKVLLSEENVLHFEDKVPDTEDTVLHSADKVPHPEDKVLHSEDKVLYFEDKVLHSEDKVLPLRTRFFTLRTRFLTLRTSFVTVLPSEDKVPQSENKVSHSEEKVFYSEDKVPHSEDKVTHTDDKGLHSEDKVTHPEDKVSHYEDKVLHSEDKVPHNKDKVPHFEDKVLLSEDKVLHSEDKVLLSEEKVLHSEDKVPDTEDKVPHPAHKVPHPEDKVPHPEDKVPHTEDKVLHSDDQVPHTQDKVLHSKDKVPNCEDKVPHSENKVSHSQDKVSDYEDKVPFFEDKVLYSEDKGLYSEDKVLYSEDKVLHSQDKFPHAEAKVFLSEDKVPHSEDKGKVLYFEDKILHSEDNVHHFEDKISHSEDKVSLSEDKVSQFEDKVLHSEEKVLYSEDKVLHTEDKGLHSEDKVPHSQYKVLHSEEKDSHNKDKVPHFEDKVLLSEDNVLHSEDKVLLSEENVLHSEDKVPHPEDKVLHSEDKVLYFEDKVLHSEDKVPHTKDKVLHPEEKVAHIEDKVPHSEDKVSYSEDKVHHFEDKVLHSEDKVLYSEEKVLHSVDKVLPSEDKVPQSENKVSHSEDKVTHTDDKGLHSEDQVTHPEDKVSHSEVKVPPFEEKVLHSEDKGKVLHSEDKVSHSEDKVPHFANKVNHSEDKALYSEDKALHCEDKVLHTEDKDNVLHSEDKVLHSEDKVIYSQDKVLHSEDKVLHSENKVPHSEEKITHFEDKVPHTEDKDKVLPSEEKILHTEDKVPHFDDKVSHSGEKVPHFEEKVLHSEGKVLHSEDKVSHSKNRVPNSDDKDKVIHSADKVLHWEDKNLHSEEKVLHSEDNVPHSEDKVLQCEDKVPDSED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC22</accession>
    <name>A0A6S7KC22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029884">
        <property type="protein sequence ID" value="CAB4042317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC22"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9895" checksum="2BAE374998DDC66B" modified="2020-12-02" version="1" fragment="single">MAEPEDKDELLFSEDEKPSINLNKEFLSTISLLNTNMLAVNESLKQFSTQRHTAEPARKRPLLSDKEGLNDQQNGHQSDADQLLNQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KD55</accession>
    <name>A0A6S7KD55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032144">
        <property type="protein sequence ID" value="CAB4043345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KD55"/>
    <dbReference type="OrthoDB" id="5945868at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="23881" checksum="6B8F8E7BED5B85EC" modified="2020-12-02" version="1">MRVYLLLTLTLACVLFSGSIASTIPSWFLDYTKLCYQWYPDGDGGQCGDGESRHLCANVNAATQYYRDDTDNRGGGCRMSWSIESPYSPEWFKNVEICYRWYADGDSGQCGGGAESILCAPVGEYTAVYRDDTDNRGGGCGMSWQLKLPSVHSSWAKNIQLCYEWYPDGDDGQCGGGADRKLCALANFWTPYYRDDTDNRGGGCRMRWGLYYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDY1</accession>
    <name>A0A6S7KDY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084323</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029355">
        <property type="protein sequence ID" value="CAB4042038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDY1"/>
    <dbReference type="OrthoDB" id="5970825at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="NTF2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15514" checksum="ED5471D332891013" modified="2020-12-02" version="1">MNMSRFTSCFSEILEDVNDAHEKIIKLLAEGKNKEALESYTDDCVIMPPGREVLQGKDAFLKFIEASVELQSKVDKTENVEEAAFGEGDLVTSRSKEIVYGKDGSVIFKRKALTVWKKVDGKYLVHNVIWNTDAPLNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEE3</accession>
    <name>A0A6S7KEE3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010190">
        <property type="protein sequence ID" value="CAB4018838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEE3"/>
    <dbReference type="OrthoDB" id="10049057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="132"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="36537" checksum="F6C5F8FCC28B10BB" modified="2020-12-02" version="1">MAVFMSRFTYVLLKIKGMDYIQILKEWIISDTSSSPLFTPSSSASNSLDSLNITGSDVQPLLSNLSPSKATGPEGIPAYLLKRCSEVIAPSLTAIFELSLQQSVFPSEWKAANVVPILKKGDTQEVSSFVENSLYDLQHGFRCKRSCVTQLLSVLHDLGRTLDSGKETDLIYLDFAKAFDSVSHSKLLFKLKSFGISGPLLNWFADYLRDRKQCVVVEGASSSFLNVTSGVPQEFDNPVWQLDYKFSSRYPPSGSDDQVINSKRIKNLCDNLINQSDDSFFTGYISSRQVRYQPDPYSRFKLYCAVTYYNEADYDACDKKYFVPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLF0</accession>
    <name>A0A6S7KLF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-type tyrosine- phosphatase mu-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015910">
        <property type="protein sequence ID" value="CAB4029053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLF0"/>
    <dbReference type="OrthoDB" id="6102375at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051941">
        <property type="entry name" value="BG_Antigen-Binding_Lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713:SF6">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713">
        <property type="entry name" value="FTP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24840" checksum="A3B42C2DF01E4893" modified="2020-12-02" version="1" fragment="single">MSFCFASYAFKLGIILLLIKELQAADDADQVWFHKAHNGKKVIENILSEHKVISWLFCALHCHGYAGQFCAGFNYKSSTIDNEVNCQLTVAQQQRDGVIEAKAKNDWVFYQRKQYIKDPCSPSPCFHGTCVVNTADRRNVTCKCFEKYEGKACETRIYDPNLNYALNKPATSSSSTYAHLSQRAVDGNTNTDWDASGCFQAESSEKQWWRVDFQEEIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KM10</accession>
    <name>A0A6S7KM10_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">UDP-N-acetylglucosamine 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="11">2.5.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Enoylpyruvate transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">UDP-N-acetylglucosamine enolpyruvyl transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A065634</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18681"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="EC" id="2.5.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the EPSP synthase family. MurA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.7" evidence="11"/>
    <dbReference type="EMBL" id="CACRXK020032127">
        <property type="protein sequence ID" value="CAB4043340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KM10"/>
    <dbReference type="OrthoDB" id="7788545at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008760">
        <property type="term" value="F:UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="entry name" value="Enolpyruvate transferase domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050068">
        <property type="entry name" value="MurA_subfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43783">
        <property type="entry name" value="UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43783:SF1">
        <property type="entry name" value="UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="EPT/RTPC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-0133">Cell shape</keyword>
    <keyword evidence="9" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Enolpyruvate transferase" evidence="17">
        <location>
            <begin position="15"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="16">
        <location>
            <begin position="7"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="16">
        <location>
            <begin position="18"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="18">
        <location>
            <position position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00038367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00039108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00039754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00042443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00042842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00047527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB4043340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="23955" checksum="B9B444B22D06F4F7" modified="2020-12-02" version="1" fragment="single">MTEKPLKNHRRTRKNQPTKESPTSSLPSTNVRTDIRASFLVFGPLLARTGKAEVYKPGGCDIQKEPRKVDYHIQAMEDMSVQEKPSIEETNIFVKMEVENGLKPAAITFEKSSVGATETAMMAASLVEGDTVIRHAAIEPEIYDLADMLKKMGAKIKIDENVEIAEDDLTDFGIEEEVWNVITVTGRKSLRSVSHRVMPDRIEFGTYAIAAAMNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KP27</accession>
    <name>A0A6S7KP27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056230</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015680">
        <property type="protein sequence ID" value="CAB4028732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KP27"/>
    <dbReference type="OrthoDB" id="5955283at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579">
        <property type="entry name" value="F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579:SF1">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="486" mass="55777" checksum="123FEE2241E31485" modified="2020-12-02" version="1">MIEKLQHRFSRKKVCNDAIEDVYDGKLYKEFFRPGAFLSHPHNISFLGNTDGVALIWSTNCGVWPVYLVINELPPWERFRRSNRIFAGLWFGKGKPHFPTFPKPFSLAIRDLGTKATSGHAGVRIHDEMKQQSLEALRKRSEGKKDFSVQGVIGLSWGFGIPSYDVVRETAVDYMHCICEGVVDQLISQWLKKSNTKADFYLGSKIEDISKELLSITPTCEITRTPRSLEDIKDWKGKQFQTFNVHQLLHLSEVVEDLGPLWSNSCFPFEDYSGDLRDLFHGTQNVDGQIVTAVSIIQKLPEIARSTTTSPSVTAFYEHLTRKGHRTCSKKERISGSLERVWSNSKLLSKEQLNSLPNNSGKIWLFRRFLIGGTLFHSASYRRVVAGNDYTVEFEMNGVKNFGTIQIYVKVEDKCFRLRCRDGQKCFCELACSYFALIETLVEDDQQLPMFGNNVVVNHIRKVNPSNRYTAYNRVRLQRSFLERLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KYH9</accession>
    <name>A0A6S7KYH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A065065</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018685">
        <property type="protein sequence ID" value="CAB4032773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KYH9"/>
    <dbReference type="OrthoDB" id="10203048at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="349"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="109"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="184"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="74"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4032773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="386" mass="44280" checksum="105933B47CF8B263" modified="2020-12-02" version="1">MASVQVMEDEDINTMFPTQGNQRLKLGERRLLEQQLQIVKKGLVQTSGSCSTYKTTTFDSRATVAKNVNVIDDIKNKPKPTEKPARKRLNYNSSGASGPIVLSPIESYIAHQKRKIENQEAKIESLEDELAEYTARRTLPSTSSLPCCNKCHRKEGHNRLNCPYPTVCTSSLFCGNIDKHPDDKQTAKQKTKQLNEERKSLLAMKDELKNREKSSASVAKRYTARVKETLIKSNPEKYLRFVNGNQIEDWRLINKDSKILEKEFKDKIPTADEARETIEEIEDFLETKEPAAATGKTSVRNPYKTVEYRGPTGKQNVLMIPHLCTLHREKSPVKKKTIFSLQKACRKVWIHYHFTLIWMNMNKILPMALLMAIYMTTKVSRTIIMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L400</accession>
    <name>A0A6S7L400_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025266</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019985">
        <property type="protein sequence ID" value="CAB4034283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L400"/>
    <dbReference type="OrthoDB" id="5976618at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="36071" checksum="447393D0F4B74C92" modified="2020-12-02" version="1">MVRIWIMFTSLKRRHYNKAILVRISMISHWKTQFPEMYNLLKAWIILSDEHPVESTHSIIRAQTRHSDTAAQLVNKVKSIFVSKTKQANFRLNFTPPKHFAFSHGQLKYLKIKSSEFLTTTLEEIIKNQSSTTLHYPKKENGKVKVTMPQLFWNKMMKENILPMSFLSDTPSNENTKCDLPACKVDDDNEDWSVLTGCWHSFHNICMDSAACPLCKEAINKKVEELGNVAKEAILFGNTADLNDADNEDEEVAMENCPIVPTTNDDQISESVTEMKARITNLAPSAPSEIHSTQEQRKHIAAEPCKPPHCKTCHTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LGN7</accession>
    <name>A0A6S7LGN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008312</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017870">
        <property type="protein sequence ID" value="CAB4031749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LGN7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16872" checksum="9C14B8A293A0A5FA" modified="2020-12-02" version="1">MLRKQANFHKAVNFQTSTTNANQSRNTAIFEDDSPKNDTIDKENIVRYKIPMSYVVSGLQNLCSEARCVQQLELAQRSCKIDEFCQNLLSKGRKSPQDSTVSKHSSAKQVWTPNYRRITDRCSLFQEESIKRARKQGEFINFYLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVJ6</accession>
    <name>A0A6S7LVJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069763</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041049">
        <property type="protein sequence ID" value="CAB4045683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVJ6"/>
    <dbReference type="OrthoDB" id="5985347at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="23571" checksum="D2FDA1829A869587" modified="2020-12-02" version="1">MSYLGVTFNDLKWSNHVSTISSKASRVLGMMKRNLWNCPKKVKEIAYTAIVRPKLEYACAAWDPYLQKDIASLERVQRKAARFCSNNHHPTASVTDMLHELGWTTLELRRTMTRLALLYKMSRGQIDVDTDTHLNPNTELRTRASHQYRYIQDKATKNTYFYSFFPRTIRHWNSLPAEIAELNSFELFKSELLEYLVDNQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBQ5</accession>
    <name>A0A7D9DBQ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Bactericidal permeability-increasing -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001294</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000427">
        <property type="protein sequence ID" value="CAB3981772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBQ5"/>
    <dbReference type="OrthoDB" id="9938407at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.15.10.10">
        <property type="entry name" value="Bactericidal permeability-increasing protein, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.15.20.10">
        <property type="entry name" value="Bactericidal permeability-increasing protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017943">
        <property type="entry name" value="Bactericidal_perm-incr_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032942">
        <property type="entry name" value="BPI/LBP/Plunc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001124">
        <property type="entry name" value="Lipid-bd_serum_glycop_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017942">
        <property type="entry name" value="Lipid-bd_serum_glycop_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10504">
        <property type="entry name" value="BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10504:SF131">
        <property type="entry name" value="BPI2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01273">
        <property type="entry name" value="LBP_BPI_CETP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02886">
        <property type="entry name" value="LBP_BPI_CETP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00328">
        <property type="entry name" value="BPI1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00329">
        <property type="entry name" value="BPI2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55394">
        <property type="entry name" value="Bactericidal permeability-increasing protein, BPI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="478" mass="53456" checksum="32BD2321E160434E" modified="2020-12-02" version="1">MSWLYGTILLVLIGQTFGNGKPAVRVRVTQKGLDYAIDSAMKYAKTQLENYPLPDTKGKISNFAFDVNYAFSNMTVYNINITNKSLRPVPRKGLYTLLRNVDFDIKGKWKINLASWFTNSGTFSVAVQGMSVGILIHLGVNGDRLVVSDIKCASKLENIDIDLKSGQATSFLFSWIKGTMNSFVKSKIPKIACQEGKKAIKKNLNEQFAKFPVKQHLKKSVTLDYSVVKKPEYKTDAVDLFLKGEFQPSGGDRTWLHQPAGLSRDDSRDRMMYVTIMDHMINSASHAYYNQNAMRVQVAVKQMPQLFAKTRIPESYLSRINTGLGLIKQSACSTCDLHISLAAMSPPQIRTSHSGIHLTVHAMAKIYVVLPNNIKQWLDLETNVTATAIPKLNGTNLSTNITDFKINTKVLNQTVFTALSGRVAEMKRIVKEQIEKLLENGISAMEIPLPLSEKFQLVKPKISYGQGYMTLETDVLII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DE23</accession>
    <name>A0A7D9DE23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061137</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000522">
        <property type="protein sequence ID" value="CAB3982609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DE23"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="29073" checksum="D95D4A2CCBDAFA16" modified="2020-12-02" version="1">MENGNNKYVNQLCAGDQLSVERAANTIHSVSNGYTPEDRCYTDSFTLWVPQMMIAQWYLTEMSSTEGISISSPWLTSKSDRPKHVPIPDGIDQMSKLVKLQFLHKVAAKIVDKLIVDEEMMDASIKTMISSQERKEMMDHMNIDKDGRFPCRFLDCSKSFKYNGKSRQTHELSHDPPVIVDDAPCNVTVHNEAENLQNSFDDVFSYNTALLSEAGGSHSVKYALESLYQLLLINGYLSHDESEVITWNRTVNNHGGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGS4</accession>
    <name>A0A7D9DGS4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Two pore calcium channel 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000737">
        <property type="protein sequence ID" value="CAB3984415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGS4"/>
    <dbReference type="OrthoDB" id="10068803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022832">
        <property type="term" value="F:voltage-gated channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028801">
        <property type="entry name" value="TPC1_animal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46474">
        <property type="entry name" value="TWO PORE CALCIUM CHANNEL PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46474:SF1">
        <property type="entry name" value="TWO PORE CHANNEL PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12997" checksum="F0C8CA863A5ACF8F" modified="2020-12-02" version="1" fragment="single">SKEQCAFQEAALCLEQGAANEKYHEFNEHFDKYRYKCYVIVHTTLYKLLDVVASVTLLALAAIEHPAMLGMDVPIWVHGTLEASCLLILSILFGIKIKWQGIQFSKFHIKTILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DK55</accession>
    <name>A0A7D9DK55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000714</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001192">
        <property type="protein sequence ID" value="CAB3987550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DK55"/>
    <dbReference type="OrthoDB" id="10473615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="239"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="252"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="30388" checksum="6C7C0AC83087EA12" modified="2020-12-02" version="1">MDEVEAKKQERSKSKMAVTHTSRRLIDATHRDVDFETLKGFIVELEKVYDEFCIITDEYELLVSDQKFVKHRVVNGDDIKTYNANVKQTYVEARDVYVKIKAENERSKQSIAMAPLMTALRRDMNRLQDIISAVDDSLSQEAPSSGSLQMDKSDMENLLNEMCDKINKLTAIQPDIYLPSDVETIMGTAYNKIRKINLNLKKNQAPKVPVILPNDEERPKNTEGMLTNLTPNVTSDVHTLAGGSTLEPVGPSTPNSLLTSLSADMSPVNPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DL69</accession>
    <name>A0A7D9DL69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049329</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001249">
        <property type="protein sequence ID" value="CAB3987895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DL69"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="68" mass="7461" checksum="6BEA7C5C902F0665" modified="2020-12-02" version="1">MTEVNPESVPSTKPLDPPKKVKDPRLVEVGKRLAEIRQQVKAEKKAMTEENLKAEVRGKCMTEGDGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSX6</accession>
    <name>A0A7D9DSX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A085251</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002073">
        <property type="protein sequence ID" value="CAB3992547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSX6"/>
    <dbReference type="OrthoDB" id="205623at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfotransferase" evidence="2">
        <location>
            <begin position="40"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="QRICH1-like" evidence="4">
        <location>
            <begin position="136"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="3">
        <location>
            <begin position="253"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="386"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="386"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3992547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="405" mass="46830" checksum="D9A25E606CD03FA0" modified="2020-12-02" version="1">MFFETPADVSAGMQLMMQRLSVVTTEEGVSRGLSFKPRSDDVFVLTPRKCGTTWMQQILHQLRSGGDMSFDDICDVIPYIELAYHTEIDLEAEHVYQPRVQTLSMMLAERYKTFCTEENVVACRKDAIPKNTRKHTSWGVNVYKDCAESRNEAFKDFQPDNPKFPIAPEDPSLLSVDEINYWLSKFCVDVRQKNGEEYRHEVLYSLFCALNRVIRESHRNLVLFKSPELKPFQDALDGPPLRDLTKKNAKFVWSEIHQNPFNQFTEALSSAPCVAYFSKHKETYVTVDACPVSISAILSQKSKGLDDEKTVAYASRALTDVERRHSQTEKEALAIIWEVEHFHLYLPLWPQLCKPVAKSVTRYANQSDNYLSVLNKKNNLNRHAMKLKQRKEKKRVQREMRCSKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DWG9</accession>
    <name>A0A7D9DWG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047051</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002725">
        <property type="protein sequence ID" value="CAB3995755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DWG9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10980" checksum="60FC0DCA4492AF76" modified="2020-12-02" version="1" fragment="single">MPYVDLAHIFKGDLSNKDTWEFDFSEVSRRKFGRRYIEQTSFDPQARNADMFNPVRVAEDGLVLFEDFGPGICERVLILHRLDLKNMDYVTFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8C6</accession>
    <name>A0A7D9E8C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046710</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004502">
        <property type="protein sequence ID" value="CAB4002983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E8C6"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="19017" checksum="B378BF71B197A742" modified="2020-12-02" version="1" fragment="single">MERIMYDQLYNYLTKFELLSDSQFGFRKSHSTATALLDCTNDWYMNLDRKMFNLVVLIDLKKAFDTVDHQILLRKLELYGIKGEALTLLKSYLTNRNQKCQIKNSFSTERLIKCGVPQGSILGPLFFLLYINDLPQCLNKTKPRLFADDTNLTASGDSIIDLETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E940</accession>
    <name>A0A7D9E940_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021331</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004641">
        <property type="protein sequence ID" value="CAB4003487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E940"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19796" checksum="9A51115C28999C62" modified="2020-12-02" version="1">MDVHTFKVYVTETENFLTKLEPVKPSYNKPSGTFINTLPFDYHSSSYFCSLAACYVAMFKSGISEDHLTNNFPNSHSNIVTSIVRFHLHFHLSRFMRNPNLLDQYLTSDDKRTIRKYTPVRETWVRRTVASHANLGTWYYGLPVSEQKRIRRQKYHQTKYGGTLSNMNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9Z6</accession>
    <name>A0A7D9E9Z6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Phosphatidylinositol glycan anchor biosynthesis class U -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A066555</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the PIGU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005210">
        <property type="protein sequence ID" value="CAB4005458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9Z6"/>
    <dbReference type="OrthoDB" id="549017at2759"/>
    <dbReference type="UniPathway" id="UPA00196"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042765">
        <property type="term" value="C:GPI-anchor transamidase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016255">
        <property type="term" value="P:attachment of GPI anchor to protein"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006506">
        <property type="term" value="P:GPI anchor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009600">
        <property type="entry name" value="PIG-U"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13121">
        <property type="entry name" value="GPI TRANSAMIDASE COMPONENT PIG-U"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13121:SF0">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL GLYCAN ANCHOR BIOSYNTHESIS CLASS U PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06728">
        <property type="entry name" value="PIG-U"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="4" id="KW-0337">GPI-anchor biosynthesis</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4005458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="34190" checksum="B6B6AA4DF3016597" modified="2020-12-02" version="1">MKAMQKVYLLNPFTVASCVAQSTAVITNLSVTVALYFALLGSAPLSMCFIAVAAYKSLYPIMLIVPITLILIQKDSYSPKLSTPMSTLRCVISTLAWFLFWIGLYLGLSRAIVGSWAFLDATYGFILRVPDLTPNMGLFWYLFLEMFDHFREFFILVFQLNAFFYVIPLSSLLRNDPVFLFYTLSSVTAIFKSYPAFGDFSIPFALLISWSHLYPYMKNVFVVGCMFLFSSVLMPLFWYLWIYAGSANANFFYAATLAYSTAQIFLLGDVIFSFLRRNFDLEHGISRKLVDGERMTVILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBA6</accession>
    <name>A0A7D9EBA6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053103</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005104">
        <property type="protein sequence ID" value="CAB4005139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBA6"/>
    <dbReference type="OrthoDB" id="5978402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01644">
        <property type="entry name" value="RT_pepA17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="236"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="46683" checksum="71E7E5D359AED139" modified="2020-12-02" version="1">MKALTVDTICQPLEPVALNMEANPHLANLIFIDVYPRGSAEVDILIGADYYFSFVNGECIKGSKPDTLTAVNSTLGWIVSGPLTGRSTSNTTAMFTCVRPDPVENILKSFWELDAIVSLPWKENHPELCDNYNKAVKRLESVEKQLLRNSIRAEAYKSSINQNHERGFAEEVKDTKAHDNDIKLVRYLPHHAVFHDDKKTPKCRVVFDASAREEDGVSLNDYVLPGPALQPNLVSVLLRFRTHKIGLMADIEKMFLQIKLAEKDRDVHRYVWRDMQIDGSPTIYRMTRVAFGVNCSPFLAIATVQNHAERFMLEFPEAAKRVMDDMYVGDCLTGADDKEEAVKLQKELTELMHRAAFNLTKWSSNTEDVPSHVEEKDRAPNALIDFREREPLKALGICWNTLTDCFEFHIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESU3</accession>
    <name>A0A7D9ESU3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">THAP domain-containing, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A067149</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009156">
        <property type="protein sequence ID" value="CAB4016532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESU3"/>
    <dbReference type="OrthoDB" id="6627680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37156">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37156:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP9-like helix-turn-helix" evidence="1">
        <location>
            <begin position="452"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="2">
        <location>
            <begin position="516"/>
            <end position="620"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="669" mass="72377" checksum="2D3732D478D7B4E2" modified="2020-12-02" version="1">MAQKQRKKGGTTWCSALDCNNNKRCNPKLQFFRFPKEAARRLEENAIPTIFHFKTGVKRKLFQDCETPKKRRHMTDRNDHIPLHSSILALEEHKVCLSEESSAGDGAVETPTHFIPVEGCLSEESSAGDGAVETPTLFILDEGCLSEESSAGDGAVETPTLFILDEGCLSEESSAGDGAVETPTLFILDEGCLSEESSAGDGVVETPTLFILDEGCLSEESSASDGAVETPTLFILDEGYLSEESSASDGAVETPTRFIPVEGYLSEESSASDGAVETPTFFILDEGCLSEESSAGDGAVETPPRFIPVEGCLSEESSASDGAVETPTRFIPVEGYLSEESSASDGAVETPTFFILDEGCLSEESSAGDGAVETPPRFIPVEGCLSEESSAGDGAVETPTRFIPVEGCLREESSASDGAVETSPRFIPVEGCLSEESSAGDGAVETPTHFIPVEGIQVKNGRRYSNETKSFALSLYHLSGKSYKMVSKLFCLPSKSSILKWISKMPNSAGLTQPSLDVITTKSHLFYDCSKDKVIGLEDLGDETTSDKLATSAIVLMARGIIENWKQPLPYYLVNESCSSDIVKEKLTDAITKLENIGLNVFGVVSDIGSNFQKFVREMGITPENPWFIHNGKKILYIFDAPHIIKAIRNNLINYNFHFDIFTSLHDRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWN5</accession>
    <name>A0A7D9EWN5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005762</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010791">
        <property type="protein sequence ID" value="CAB4020118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWN5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="487" mass="53616" checksum="AA03CFBEA61D9B79" modified="2020-12-02" version="1">MGIFDRIRKIFSRSDSSSTSRNRYPHEHGARLHGYNNEVATEFNHVVQRSYQVEHNRHFNISASSQRSSNVIDRPSATAPHRSNTTSVAARESNTSHTQPDINLERANSCKGFALPLSGNAIHSAEYVKLTNTAQNVSQPPRLTGSHEVHVKDDSKISNENDYGQKYQRPSESKAISATYSTTSVSKSKAPDLNILQRTTKPECRKQTANQNTLSNMAMGNVDKYVNPSEFGRTTRLKMPSTSISTTRSGNREYRSTVEVDRSSMSKYLMPTTSAAQTASIKSYNTPAISQQGATFNKNNTTQTSSNTKTSVFVCRLPDHNRGIGAFGNTQQSTSLSKTGTSSITTTSALVPSLTLHKVESPKLSDHGRGFREVFGNSQQGVKLNKTNTAQTSSHSKASVHVPLVTSYKCGSTTIPDHMSAPMNYRPSIPQYTRTYIVEDKFVEKPGASLPDPPGVLISRFPRFGFYPVKGEFIVSILLHWPVGQVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F1I4</accession>
    <name>A0A7D9F1I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010752">
        <property type="protein sequence ID" value="CAB4020049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F1I4"/>
    <dbReference type="OrthoDB" id="5988787at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="16760" checksum="7EDFF12F91DB96C2" modified="2020-12-02" version="1">MFEDANKVVEKLRLSCGKTPRICDYVLFMCQEITAAEIAGPSAMQKLENNIVKKIKNQSDPILTWLHPSVTVHDVAGNKVPGIEIITSVVDAFPDVSNSEDIETLEAVENMLRVQMEAWASNCDTDGELVEDSQVAEDINYNYSFTESRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H7K9</accession>
    <name>A0A7D9H7K9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Krueppel-like factor 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A051724</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000051">
        <property type="protein sequence ID" value="CAB3977501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H7K9"/>
    <dbReference type="OrthoDB" id="4748970at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd21973">
        <property type="entry name" value="KLF6_7_N-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000021">
        <property type="entry name" value="Basic krueppel-like factor 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000018">
        <property type="entry name" value="Krueppel-like factor 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000630">
        <property type="entry name" value="Zinc finger protein 180"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23235:SF166">
        <property type="entry name" value="DENDRITIC ARBOR REDUCTION PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23235">
        <property type="entry name" value="KRUEPPEL-LIKE TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="141"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3977501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="31666" checksum="EB43D6997EAC2A6F" modified="2020-12-02" version="1">MDVQTALPSVNIFNELQTVHEKGYFYVLPSLEEDWQQTRLEMDRYLCPESSKTDTTIHNNAPWNDIPLTFDLENLMLPEDFSAVNSCELTYSHTAFTQEIPASQPVSYEENSSLGQSFEFKLKPLSIQVPNCQENGAKITHNVLPLTPPSSPENNSTKSDGNRSKPKHSRLNLKTSTFVVNKDLTESKRRVHRCPFTGCRKVYTKSSHLKAHQRTHTGEKPYCCSWDGCHWRFARSDELTRHFRKHTGAKPFKCSHCDRCFARSDHLALHMKRHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9X0</accession>
    <name>A0A7D9H9X0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MORC family CW-type zinc finger 3 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A077456</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000103">
        <property type="protein sequence ID" value="CAB3978303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9X0"/>
    <dbReference type="OrthoDB" id="757982at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22249">
        <property type="entry name" value="UDM1_RNF168_RNF169-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045261">
        <property type="entry name" value="MORC_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041006">
        <property type="entry name" value="Morc_S5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011124">
        <property type="entry name" value="Znf_CW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23336:SF76">
        <property type="entry name" value="MORC S5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23336">
        <property type="entry name" value="ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17942">
        <property type="entry name" value="Morc6_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07496">
        <property type="entry name" value="zf-CW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51050">
        <property type="entry name" value="ZF_CW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="359"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="653"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="318"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="749"/>
            <end position="829"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="361"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="413"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="426"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="469"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="653"/>
            <end position="667"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="864" mass="95850" checksum="F554EAC81B9FE607" modified="2020-12-02" version="1">MDVYKYSLIKSEKELNSEFDGIDSEHGTRIIISNIRKTTDNKPEFDFVTDECDIRIPDDTSSESEKYRKTKRQNHVPECDYSLRAYCAILYLKPKMQIFIRGKKVKTLVVERSLSKTEVDRYKPTHAITAPLKVVFGFNSRNKNHYGIMMYHRNRLIKPYERVGYQLKANNLGVGVVGVVQCDFLQPTHNKQDFDYTKAYRACIYSLGVKLNEYWNEKKGPVKSSTNSIADQVIPEPQEVQALPDQTWAQCDERTCLKWRKLPDGIDPDSLPEKWYCSMNPDPNFKSCDVPEEKEEEKTSITPYEKVQKRRLVKEMEEKQHREKAAKLALLLEQEEKNKILEKREEILKKKEELFNLQMAQREKDTKPKIKVEGGSLPTAQIAPRSTTKPLNAVTPSAKPSPRQIGSQLAARLSQSATRTPQTNQSARSPAKSKPSPALSLARSNQSTPSPTQASQSTPKSSLSQSTPRSPLNSSQLASRFAQTNQSMTSISAASQSASRTPIRQSLASKPSQVTKSPAKQNVTIVQAKPGAGQSLKFVTQSQKLSTTGITFKMVKASNGTTYLVQEKKSQGTPTTTGTKPTATVVRASGPALAAISAVGSKSTPATGQTNSTPISARPIVAALPSTNVDVKPRLNVMPKPQISTAKTAAAVRQQNGSSTQNATRTVAKSPANADVKPSLSLAATAYSEITGNTSTTPQDVKNILASGIKREAPGNNVSPIPAKIQRTERDATIIVIDPLPTQQQKPSETDAQKRIKELESRVKTLESELSEVRSEGKNRLDELVEDLHEKSVMLIRRNKEFEEKKQEIQSKQNDLSEKTRELKVLRGNVCKLLQVLVPEIDVESEGDGDTVDDLLRQVLEANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCE8</accession>
    <name>A0A7D9HCE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000115">
        <property type="protein sequence ID" value="CAB3978472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCE8"/>
    <dbReference type="OrthoDB" id="10064694at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="791" mass="90120" checksum="F4E6CE6B9E7E7032" modified="2020-12-02" version="1">MSKQLTLSGISFKPKPYFKNASTLYEKFINKNWSKRHYCFKTKQEFIKNALHEWDKIRHNENAVNEYLAQSESTKNTSKPFFQKLSCKADSQHKEDTILPSIHHPVKKKSESTDLLENAPTNIESRENYLKSHELKMVKKFLDEIGSQSSEFLAPDVLADESFMKFLTSLMYSWNTFFTLRSSYKDMGKYIRKSALNFMLEAIEVGVQNFKADIKTVVDIKCLSGMSATLLSQSYLKRAEALKNIILSGSKLNMLISDKSLLNSLTRRIKQQEQNKNSFTMLTTRLPSELVSCFCVNSSTLSWDEVFAKFVEDENSRTEKTLQGSTRDQITIATYLSENLVVSSEELGLKSEAEKLQTVDSKEDEKEDGKGDDKRAESNNRENKEKTCEYREQPSLVTKFPDIIDKTTEFIKQHGFAAQHRRRTSTGYSSGVTIAQIREHLMKEIPGLKEHGISSSTIRRLFKAPFRSRVSSARYKNYINVRVGTKSNSYREHHPDAHYLFARNKARREFATLFSDHVTMISTDDMAKIKVGAPAVSRYHQIQRFFPTGDSPNYSDHDFPVPNYLLSVSGYMVLQETEVENNDDVSETAQNFSNASTYDYTPGTTVLTQTENSVLEKFNIFMDESVNDLYEIIISQARTQLNVKTTKEEILDVLKEEKGIQVEYPDSRALLEAIVFGISSLFQTRMVLINVTDNTSVDIVSDNCNNEEAPIYICMKNEPLAFTLPVFCKESVQKFESLPINPGSLTYDNLGRLHLNTPYSGPAHVYICSSKYNGTVASHITDIHGIICGDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCR8</accession>
    <name>A0A7D9HCR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A053318</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000272">
        <property type="protein sequence ID" value="CAB3980245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCR8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="3">
        <location>
            <begin position="8"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="4">
        <location>
            <begin position="161"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="435"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="439"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3980245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="467" mass="54312" checksum="02DDD505DB0F1E89" modified="2020-12-02" version="1">MVTITEPNKTRICLDPRDLNNTIKREHYPMPTIEEIVSRLPQATVFSPLDATCGYWQIPVDEKSSKLLTFNTPYGRFRFRRLPFGISSASEVFQRTMNQPFGDIKGCEIIVDDILIWGRDEVEHDDRECLLKVLERARKNFVAQNTSVIRDLIKERNEWTWQPEHQKCFDDLKTACSSQPTLVYYDVNKPVKISCDSSQYGLGAVCLQDEKPVAYPSRTLNDTEKRYAQIEKDLLEIVYASPKIRPESDLQERNSAPHRAKKILSTAKKNNEDPYLALLGHRNTPRDNILGSPAQRLMARRTKTLLPISDTLLKPSVIEPSEVTKRLSHYRQQSKKYYDRTAKPLPNLQKGDVVRVTDIKGKYMKKGTVINETSYPRSYMVNINGRNYRRNRRHLLKVKEEPDSEHEYDTIEEPINQQETIVEQTNWQETIVKPSQVTDHQDDHERQHGLPRSRFGRVIKPPDRLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HFG3</accession>
    <name>A0A7D9HFG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A005211</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000295">
        <property type="protein sequence ID" value="CAB3980492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HFG3"/>
    <dbReference type="OrthoDB" id="5957584at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="515"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="515"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="536"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="597"/>
            <end position="606"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3980492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="614" mass="71195" checksum="6064786F3BA7D32D" modified="2020-12-02" version="1">MIKQLVTNHPVLRYYKVNEPVKIQCDASEVGLGATLLQKGQPVAYASRSLTTTERRYAQIEKECLAILFACERFDLYICRRERVVVESDHKPLEVIFKKSLLTAPRRLQRMLLKLQKYSLDVSYKRGKEMYLADTLSRASLPETGSGSSKMKTVQIFHISQQTKVEKEVESVNHTSFLNVTADRLKQIQQHTAQDMVLQVLKTTILSGWPETRQEVPIVIRDYWTFREEMTVQNGVIFKRKRIVIPKSMRPEMLQRIHSSHLGGESCLRKARDVLYWPNMSAEIKDMVEKCTTCNEYQQAQKKEPLMTHPIPECPWSRIAMDIFTLHGEDYLITVDFYSDFWEVLDRLVDMTAATVIEHCKVHFSRHGVPDVVMTDNGGQFDSRDFTSFAKDWEFEHTTSSPYHSQSHRKVEAAVKIAKRLMKKAKRSGQDVWKAILDWRNTPTESMSSCPVQRLMSRRTRTLLPTASQLLKPKVEEGVQEKIKLKRQKAKRYYDRGSTSFPELEKKLERNRKFLRTSKEKDVEQSIPEEVPEPQPVSNGPVETNSESTTHSRMLQKTPDKSITSPRNSLVSEPTETMTDNQSCEGTQSTPNVERHTRTRKIRQPKRYTDFVMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMD4</accession>
    <name>A0A7D9HMD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001175">
        <property type="protein sequence ID" value="CAB3987436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HMD4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="20553" checksum="20A61E45F400B790" modified="2020-12-02" version="1">MALVKILLLVSLLAKGNGECLSDNDCVDLLMCCENSFCCGNVCMASCQRHICILTSDCRNPNEFCCDDNRCHLERCPTISSSGYILLFVISSVCGMVITVYFLLRFCCLSPDESAQETFIISKTYRGSSSNVGYYDSPVYPEPSAPPAPPYSPTSPNLMDTAPGAAVYSATNVNQGSTVYPEPPPPYNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQJ7</accession>
    <name>A0A7D9HQJ7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A012244</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020001307">
        <property type="protein sequence ID" value="CAB3988324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQJ7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006172">
        <property type="entry name" value="DNA-dir_DNA_pol_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00106">
        <property type="entry name" value="DNAPOLB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="135"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="468"/>
            <end position="634"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3988324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="931" mass="108127" checksum="7DBF850444597F39" modified="2020-12-02" version="1">MTRISTKKSVKHKCGQFYCLHCNAIKDQGHACYMKPYKIPVNEVLPVLYFYDLETRVNDEKLMVPFYAVVQKVCSQCDEKEFVRSQDNFLPHPTIKHCDNSVEPVACCMHRQYVFENNNEDITELLISFMFTQTTNSVWIAHNGGRFDNIFLLRELLVKKGVVPHTVMNGNKIMSMEIRHGDISIKVIDSYLFFAMPLSKIPEAMDIPDLAKGYHPHLFTDLNYVGPMVGLEYFDLSREENMEAFNKWYEIQKTKTYIFRDAVYYYCRLDVDILRQGCVRFARLIVNITKILPFYDRTCHTIAGLALKIYRANFLKEDVIGQIPPTGYGGNVNQSIIALHWLEEIRENLETQGYSLRSKLSPEGEENILNYNVDGYCAETNTIYQFHGCFFHGCSECFESGDINKVNGQRFYVLREKTRRITDLFKDYHFTVVEKWECEYIQECSLSRNNILELGQVKYFTYIILNPRDALFGGRTSPAVLFYDVKDSEEKVFYYDFTSLYPYVQKKYRYPTKHPEITRGVDKCAKLNVSQIFGLIKCKILAPFTMLFPVLPIRLEKLTFALCTTCARNQCDKCTHDDEQRALYGTWTSVEVHVALEHGYKILAIYEVYHYPHSAKIFDLYVDTFMKLKQESSGMPRQCIKDDGSVDNVKLQAYIQEYADHEQIYLDASKIEHNPGQRTVMKALLNSLWGKLAQNEDTTVVSFLDDFDDLLQLVNDKTIEVTSLDFISDNIARTTHRKISGALTTLGNRNVVIASFVTAYARLELFSVLDKLQENVLYYDTDSVIYREDRARGKYLETGKYLGQLTDELSEKNCTEKWITEFCAAGPKSYSYRTNRYIKTLEDGTREERVDEVTHVKGFRLQGDAKKKITFDAISSCVRDHSREITVVYREFARCNSQTIAVENKEKTFHFTFDKRIVRDDFTTLPFGYGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HS12</accession>
    <name>A0A7D9HS12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Kelch 20</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A028977</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001678">
        <property type="protein sequence ID" value="CAB3990536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HS12"/>
    <dbReference type="OrthoDB" id="6482909at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.420:FF:000001">
        <property type="entry name" value="Kelch-like family member 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017096">
        <property type="entry name" value="BTB-kelch_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412">
        <property type="entry name" value="KELCH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412:SF451">
        <property type="entry name" value="KELCH-LIKE PROTEIN 20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037037">
        <property type="entry name" value="Kelch-like_protein_gigaxonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00501">
        <property type="entry name" value="KELCHREPEAT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0833">Ubl conjugation pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3990536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="569" mass="63544" checksum="E29FC65180B2DB41" modified="2020-12-02" version="1">MATNVEEICIAKLKEKKFIANGFAGSMMSNFYELMQSGEFCDVVLRVGSRDFNVHKVVLVSASPYFSAMFRGGMSEKFQQKVNIKEVTSESMELLLDFCYTGEITVTENNVEDLLLAADLLGFSHAKESCSSFLQDQLDPGNCIGILQLGEKHTCTKLCSKAESYILRNFKDVAECNEILSLDVKQLKYLLESDNINIDNELEVLQVIFNWVENDSKTRRKMLPFLLPAAKLSFIPPKKLREISKQSLIQGDIFLQNIIEEAMICHCECAGMPMRKSCAAWLYILGGERSFMKETRSIEYFDCERMEWNNTVKLAGSRVACAVTVLGNTLYVIGGSRQGTKLNTVQCYDPESAAWENVAHLTKCQGEVKAAVLDGNIYVAGGSCTGQATCSYVEKYCPVSNKWTAVCNMTHKRRRFSLVLLNNSLYAVGGFDDQRGYLSSTEHYLPDSNDWQEDASMFYKRCDFGAVALSGYIFAVGGVNERQGSLSSVERYNPSRDSWVAMSSMNRPRGGPAVAVYCGKIFAMNGMSEYMSVEDSVECYDEVSNSWKHVAGTTMARFGAAAFVFKFLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUQ1</accession>
    <name>A0A7D9HUQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine- kinase endoribonuclease IRE1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050836</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002224">
        <property type="protein sequence ID" value="CAB3993274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUQ1"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990604">
        <property type="term" value="C:IRE1-TRAF2-ASK1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070059">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036498">
        <property type="term" value="P:IRE1-mediated unfolded protein response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.180">
        <property type="entry name" value="KEN domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045133">
        <property type="entry name" value="IRE1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010513">
        <property type="entry name" value="KEN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038357">
        <property type="entry name" value="KEN_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954:SF28">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954">
        <property type="entry name" value="IRE1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06479">
        <property type="entry name" value="Ribonuc_2-5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51392">
        <property type="entry name" value="KEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="494" mass="56977" checksum="A655E896CD18644C" modified="2020-12-02" version="1">MGQATRKLRTEVTESERIAALKPNSNEWKRVSVKYRPKFERLLKIWENANESQSITIINGNRVCFDKEFLIGGGSYGTEVYIGLGSDGIERAIKRLPKRLCDHLGKNERDILNSRNATESPRIVKYWFYDDTSNRDFCYLILNLYERNLEDYIREEGDKITEFSARVMIRQVLEGLRALHAKNPDRILHRDLKPANILVDVDGNIALSDFGIGLFFREDANTHKTINQCGTSGWIACECIDWDDLYSNELRDPSDAPIQLRWKEESDIQVAGMLGFFILTKGKHPFGPSIHRLEKMYLDNPICLIELSDPVVKDLLSQMLAKDPDKRPRVVQALKHPYFLSLEEQIQFLQAVGNDPKIIEDNCAVSKALDNHCQSQLRYPLLPNNWKSVIDPSDLDTLCRGGRPSKTYVNSQYTHCLRLIRNVLQHPDGKLDQLKKKGQATSLQEYFLKLFPKLPLVLYQFFRRNHELTKRPALKKFFPVMTRAAESDASMDRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXW5</accession>
    <name>A0A7D9HXW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytohesin-1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048302</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002865">
        <property type="protein sequence ID" value="CAB3996419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXW5"/>
    <dbReference type="OrthoDB" id="430364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032012">
        <property type="term" value="P:regulation of ARF protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00171">
        <property type="entry name" value="Sec7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.1000.11:FF:000002">
        <property type="entry name" value="Cytohesin 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.29.30:FF:000286">
        <property type="entry name" value="PH-protein kinase domain containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.220.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1000.11">
        <property type="entry name" value="Arf Nucleotide-binding Site Opener,domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023394">
        <property type="entry name" value="Sec7_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000904">
        <property type="entry name" value="Sec7_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035999">
        <property type="entry name" value="Sec7_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663">
        <property type="entry name" value="GUANYL-NUCLEOTIDE EXCHANGE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663:SF402">
        <property type="entry name" value="MIP16918P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01369">
        <property type="entry name" value="Sec7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00222">
        <property type="entry name" value="Sec7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48425">
        <property type="entry name" value="Sec7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50190">
        <property type="entry name" value="SEC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="359" mass="41111" checksum="0498E7050D791A0A" modified="2020-12-02" version="1">MGSETKSPSARVDSMEVDNLSDKLTEDEMKLLAELRRQKAIILAEIQQLKTEINEVQSEIESVEQPDEGNNSKQIAIGRKKFNMDPKKGIEYLVTNELLNNTPEDIARFLLDEDTLNKTMIGDYLGENKEPMLSVLQCFVDFQNFKDLLLVDALRTFLWSFRLPGEAQKIDRMMECFAKKYCDQNEGVFTSTDTCYVLSFSVIMLNTSLHNPSVKDKPTVEKFITMNRGINCGGDLPKDLLISLYENIKKEAFKVPEDDGSDITRTFFNPDNEGFLTKEGGHHKNWKKRYFILKDNCLYYFKDIKDKEPRGIIPLENLQVREINNDKKPFCFEISARETGGMIKACKTDSEGKVVEGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I313</accession>
    <name>A0A7D9I313_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">dolichyl-phosphate-mannose--protein mannosyltransferase</fullName>
            <ecNumber evidence="5">2.4.1.109</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A032857</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endoplasmic reticulum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TMTC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.109" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020003762">
        <property type="protein sequence ID" value="CAB4000136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I313"/>
    <dbReference type="OrthoDB" id="1658288at2759"/>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004169">
        <property type="term" value="F:dolichyl-phosphate-mannose-protein mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013618">
        <property type="entry name" value="TMTC_DUF1736"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052384">
        <property type="entry name" value="TMTC_O-mannosyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44216">
        <property type="entry name" value="PROTEIN O-MANNOSYL-TRANSFERASE TMTC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44216:SF3">
        <property type="entry name" value="PROTEIN O-MANNOSYL-TRANSFERASE TMTC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08409">
        <property type="entry name" value="TMTC_DUF1736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4000136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="734" mass="83007" checksum="0E0CFA229DD51D56" modified="2020-12-02" version="1">MAQKHWKTAGVVSLIGFLCYINSLEGDFVYDDSRAIVENTDILPNTPWSNLLKNDFWGTPLKHSGSHRSYRPVCIASFRLNYYIAGLKPWGYHLVNVLLHCVVSLMVVLVAHIVFKENITVSVAGVLFAVHPIHTEAVAGLVGRADVGAGLFYLASWLSYHNGCPNSDTTTTRWSWMFLSMVFAALSMFTKEQGLTVIGVCLLYDVIIISRIRMKDFPLSMKKAKENGLILRIAVLFTTASILLTTRMILMNNTPPSFSKSDNPAANSDSFITRTLTFLYLPAMNFWLLVFPHTLCFDWSMTSIPLVESLNDIRNLFSFVFYVSFVLFITLCLKGVLRQESKTEFVVKPTSKNFKNNMKKFGVRNRRILRKTNGNVGHSSLNNSLSNNTVKTGGKIDKNEDVIQTNSVKRNNCALDTNERAVLSLAFLVLPFIPATNLFFYVGFVIAERVLYIPSIGFCLLFAYGFSMFWKSGGKFLKLLLAMITCVYLVLLSARTVRRNIDWRSDENLYRSGIAVNPSKAWSNLGNILKQQGKITEAEKAYKKSIEHKWSADTWYNLGLLYQGQKQFSESVKCYEQAIDLRPRFVLPYLNLGVVMENLKYKENALDILTQATKLNGEGLKNPKQHRYGVAAAKYHRGRILADMNRIHEAIEVYREAVETRPDDYPPHSLYNLLGMTQSSICIGEASGSCLFSNNLETLLRTVSLQDMSYNIFTHPGDLCSQLIRLISFTYDAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3D7</accession>
    <name>A0A7D9I3D7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Alkylated DNA repair alkB homolog 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A042700</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002904">
        <property type="protein sequence ID" value="CAB3996600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3D7"/>
    <dbReference type="OrthoDB" id="271595at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106335">
        <property type="term" value="F:tRNA (5-carboxymethyluridine(34)-5-O)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030488">
        <property type="term" value="P:tRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002098">
        <property type="term" value="P:tRNA wobble uridine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027450">
        <property type="entry name" value="AlkB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051422">
        <property type="entry name" value="AlkB_tRNA_MeTrf/Diox"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13069">
        <property type="entry name" value="ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13069:SF21">
        <property type="entry name" value="ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13532">
        <property type="entry name" value="2OG-FeII_Oxy_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="73"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="81"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3996600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="567" mass="63503" checksum="0E528E13CEB7B7F5" modified="2020-12-02" version="1" fragment="single">IPPHVDTHSAFEDGIISLSLGAKVAMDFRHPDGRHVFILLPRRSVLIMTEECRYAWTHGITPRKYDVVNEDEVTPNDEGVHSTTQHPSNPSNAVTLLPRKVRLSLTFRKIRHTPCDCKYTANCDSQNYGRQLTKGGGGVDNSLPQSEEDALNLEKEHVHNVYESIAEHFSGTRHSPWPKIAEFLKKQPPGSIVADVGCGNGKYLGINDQLLMFGSDRSQNLAAICRERGYHVIVCDILSLPYRSNSFDVCICIAVIHHLSTAARRLAAIKELTRIIRPGGRILISVWALEQDFKNAENRKNRDHWGKYAQTDSKMCSTANHVEKQDLDQFHVSLPSERKSYPTNSNIETTSAGVVTSAINNGVVSKQDLCSKVSNRVYDLDCQNNIYSDTKRVSHNNEDTDTLNTPKCSRMSSCVTDTSKADCTSEILSASLNTSSNEIETSTQECTGNTAASRDDSVKLKVNASRDVFEQQDLLIPWNYRGQKNCTNSSKELTCASDKHLVDQDEQGLNSAGKDKVPKVYQRFYHVFKENELADECRKLDDISVVRCYYDKGNWCVELEKVTGLLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I644</accession>
    <name>A0A7D9I644_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010046</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003568">
        <property type="protein sequence ID" value="CAB3999349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I644"/>
    <dbReference type="OrthoDB" id="5990143at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="34687" checksum="3505D7AB785A8D54" modified="2020-12-02" version="1">MEGQESESTSSESQSGTSSDEYIEFKEPADIIVISDNEAASARNGDGTSCDPLPVGGTSCDLLPEEKEDTHAYLRVWKNAAFVIDLGDQDPMMMIRNLESDNNGAYTCMGTRTSTWKTEESIDDFERARCAKNTENRFIRYISAYPDPELLLLGYDSQFRDLDRFCTSPVNFSILSIDPTFNLGAFYVTPMSYENLFLVSNRTKKHPTFLGPVLISHNLDESCYSHLTIVTTQKSPLLEDNLIAFGTDGEKALYNQFGKKFKSAVHVCCIGHFRENCKTHLKGVSLENQNKILNDIFGKNIEDMHTMVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHT0</accession>
    <name>A0A7D9IHT0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATP-dependent RNA helicase DHX36</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A038314</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005353">
        <property type="protein sequence ID" value="CAB4005910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHT0"/>
    <dbReference type="OrthoDB" id="5600252at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011709">
        <property type="entry name" value="DEAD-box_helicase_OB_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059023">
        <property type="entry name" value="RNA_hel_CTD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07717">
        <property type="entry name" value="OB_NTP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26026">
        <property type="entry name" value="RNA_hel_CTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEAD-box helicase OB fold" evidence="3">
        <location>
            <begin position="5"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="RNA helicase C-terminal" evidence="4">
        <location>
            <begin position="103"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF26026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4005910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19327" checksum="3FF0EB2E2C8E3A99" modified="2020-12-02" version="1" fragment="single">NESLIKAILCAGFYPNVISVCHFPHSSRPPQLSIQQDGRHVKVEVHPKSVNCSERSFHSNWLIYLEKIKSTMLFIHDCSTVTPYSLLFFGGEISVGLDEDQEIVTVDHWIKFNCRNTVAILVQRLRAELERLFEEKIRCPSLAFALNKKSGEDRQSVLIRTVIDLITSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ILP7</accession>
    <name>A0A7D9ILP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057155</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007218">
        <property type="protein sequence ID" value="CAB4011647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ILP7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17198" checksum="88A8811DAA34317E" modified="2020-12-02" version="1">MERYSVTGLVNNGRRLLGAFHLTEILEILLENQMEHVNFWNAVSLILKNVTLSLKSLLAAFGEINPDSRHGNGREPAVLVAVFAHGRLEGSNVFGKCFNGVKISKFPEFPICGQPREIVRNFRNIVPEINVFHLIFKQDFRNLRQMESAHAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IT37</accession>
    <name>A0A7D9IT37_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031189</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007566">
        <property type="protein sequence ID" value="CAB4012580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IT37"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="66" mass="7344" checksum="1208A85906E90904" modified="2020-12-02" version="1" fragment="single">MSADDPNHHFIVKPFPGATVSDMEDFVMPLTRRTPDKMTLHVGTNDLRSHSTPKIIADSIVNIVTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IW71</accession>
    <name>A0A7D9IW71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">MAM and LDL-receptor class A domain-containing 1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A046121</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008575">
        <property type="protein sequence ID" value="CAB4015088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IW71"/>
    <dbReference type="OrthoDB" id="6380398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06263">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00190">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.10:FF:000038">
        <property type="entry name" value="Serine protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.10:FF:000003">
        <property type="entry name" value="Transmembrane serine protease 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033116">
        <property type="entry name" value="TRYPSIN_SER"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24252">
        <property type="entry name" value="ACROSIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24252:SF7">
        <property type="entry name" value="HYALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00629">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00020">
        <property type="entry name" value="MAMDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00137">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50060">
        <property type="entry name" value="MAM_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00135">
        <property type="entry name" value="TRYPSIN_SER"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="5" id="KW-0720">Serine protease</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="340"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="390"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="516"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="571"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="702"/>
            <end position="725"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="344"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="395"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="522"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="709"/>
            <end position="718"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="978"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4015088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="978" mass="106809" checksum="8E9F004547EB704F" modified="2020-12-02" version="1" fragment="single">KEIKPFLPDLFFDIHRHKSNLVPRACDPREGTRGSGIIRFREESDWPLKWNAAFDSFPRIADRAKDWVEWTLEKTPRVKNRVLPSAAKRLCPNCGKGNFFLGKVVSGQTARPNSWPWQVSFRRTGSTFHFCGGSLISDQWVVTAAHCVQGKSASGLNIRLGEHNFNSNEGNEMDSRVERIIVHPGYARLNNDIALVKLARRVSLKPQIRPVCLPQQGVSVDEVSGQECYITGWGRTGASKPGATVLQQAKLPVISESKCRQHMGSGVTRQMICAGFGGSSTVSGCMGDSGGPFVCRDKSSNRWILHGAVSWGSRTCSAGHNEFTVFARVAEFTNWIKQHVGNVQPPPQTPPPPQTPSPRPPSPPRPSSANCNFDNGNICSYQNGAGQFNWKVNRGSTPSSGTGPSSDVSGRGSYLFIETSNPRQFGDKATILTPYLNGPQCMKFSYHMYGTHIGNLNIYANNQRMFSKSGNQGNQWVGVEMPILQSGRYMVKFEGVRARGYQGDIAIDAISFTPGSCSFQTPKPPTPRPTNPPTRPTNPPTRPTNPPTQAVRCNFDQGLCSFTNGANDDFDWTVRSGSTPSGGTGPSRDVSGNGKYVYIETSSPRVQGQKAYLVSPQVSGTQCLKFSYHMYGASTGSLIVYQNMGGRMVELFKKSGEQGNQWKKAEVQIKNGNHYSVVFSGVRGNNYQGDIALDEISITSGQCSGSPGTKPPVTPRPPSGSCGEKGRGLSDFPKIVGGQEATPGEWPWQVSLLRGTFPFCGGSLVSNQYVITAAHCVKSTDWNRVKIRVGEHDMRVNEGHEQDISIARNGITVHPQYNKGRTDYDIAVIRLSRSVQFTQRIKPVCINRGIDFTGKSKLEFSTRQRCYITGWGRLKSGGSTPKVLQEAQVPIVTTQECKKSYGSSITDRMLCAGYSRGGIDTCQGDSGGPLVCEHSDGSWHLSGVTSWGRGCASAGYYGVYAHVANLYPWANNALGNRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JCG6</accession>
    <name>A0A7D9JCG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014445">
        <property type="protein sequence ID" value="CAB4026847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JCG6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14705" checksum="2CCCF610F65DBAA8" modified="2020-12-02" version="1">MEANTDRGSSRIIENEVSSHNSTCSVVIEGIKLEMVILETRLLNAIKENKSDICSLKFKFKVKDLEGVIGHQDDAILKLSEDNLILKSKLSSFQNLTYKVICHDHVNNERANESAVEPRLMTNVDSTTKTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JFE9</accession>
    <name>A0A7D9JFE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015445">
        <property type="protein sequence ID" value="CAB4028376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JFE9"/>
    <dbReference type="OrthoDB" id="28045at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035023">
        <property type="term" value="P:regulation of Rho protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13329">
        <property type="entry name" value="PH_RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.2510">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041020">
        <property type="entry name" value="PH_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051632">
        <property type="entry name" value="Rho_GEF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13944">
        <property type="entry name" value="AGAP007712-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13944:SF21">
        <property type="entry name" value="CYSTS, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17838">
        <property type="entry name" value="PH_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="278"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="280"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="319"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="338" mass="38153" checksum="05F01D811254527F" modified="2020-12-02" version="1" fragment="single">SNADHKELQKALLLVKDATKAVDNAIKDYEKQSRLKDIKIRMEKGSVVLKSGQKIKNSRFVEYNSKMIHDGILQWKNARGKLTETHVVVLESMVAFLQENDKKFSLLSIDGKSPCIALKTLMVREVATDKCAIYFVSTSKKGPEMYEFVSSSQKEKRLWCAIITDAIAKAPEDTGELFHSPEEEKKLAEERLKRRNEILEIMKGKDKELSDLVEEKNKLANEMKELWQIPEGDGKTKEDKRISANERARSLLLSAITQLTADTGLIRESHSDSELAAATYDDKKTSSPKRAETFGGFDRRPSQKASRRPTTTIPEGESEEKPRRDSGLSLASKDHIVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGX8</accession>
    <name>A0A7D9JGX8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">N-acetylneuraminate lyase</fullName>
            <ecNumber evidence="5">4.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A009689</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>aceneuramate = aldehydo-N-acetyl-D-mannosamine + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:23296"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:17122"/>
            <dbReference type="ChEBI" id="CHEBI:173083"/>
            <dbReference type="EC" id="4.1.3.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-sugar metabolism; N-acetylneuraminate degradation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the DapA family. NanA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.3" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020016238">
        <property type="protein sequence ID" value="CAB4029544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGX8"/>
    <dbReference type="OrthoDB" id="191315at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008747">
        <property type="term" value="F:N-acetylneuraminate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="DIHYDRODIPICOLINATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128:SF21">
        <property type="entry name" value="N-ACETYLNEURAMINATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11 14" id="KW-0456">Lyase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="12">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="12">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00044906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR001365-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR001365-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4029544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="332" mass="36948" checksum="2178B60FACF1A8C5" modified="2020-12-02" version="1">MFHFIFRQAYKKSKYCFYSQNSLKCALYSTMNFQFGLAAAPVTPLDKNGEVNVSIIGKYIDILLEQGIRSVYVNGCTGEGPSFNVQERKLVAEKWVEYGRNKLDKIIIQIGGTNMKDSQELAVHAQKVGASAIASLPHLFYQSDVSSLIEYCAELTSVVPEMPFMYYHIPGFTGVNIKVEEFLEAAQHKLPSLVGVKYTHNDLFDATQSTLVGGGKYLVSLGGDDLLLSGLVLGIKSSIGLTYNYCGKVNCSILEAYNKQDMDQARKLQLEVHQYWKIFMKYGGNAAAVTRACLILLGLDVGPPRLPNMPLNNEELKLLKIDLQNFLTVNKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHH5</accession>
    <name>A0A7D9JHH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SH3 domain-binding 5-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080842</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SH3BP5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016345">
        <property type="protein sequence ID" value="CAB4029696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHH5"/>
    <dbReference type="OrthoDB" id="446789at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004860">
        <property type="term" value="F:protein kinase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007940">
        <property type="entry name" value="SH3BP5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19423">
        <property type="entry name" value="SH3 DOMAIN-BINDING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19423:SF1">
        <property type="entry name" value="SH3 DOMAIN-BINDING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05276">
        <property type="entry name" value="SH3BP5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4029696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="21612" checksum="213E8CEFB32A01EC" modified="2020-12-02" version="1" fragment="single">MEEETWDDEVDPRIKGELERLNNASHQINLLEKDHEDAQEMFRLTLAESASHLKSLYDKLGKKVDQARPYYETLNQTEHVHNESEQAAARYERACDNYNAAKDMVKKAEEKLKQDERFLDSACQEMLNHATIKVMDANQEKNAAERIHLEVSQAFNEMQEKKTRLQKSLKSVIHKTRSYFELKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JIZ2</accession>
    <name>A0A7D9JIZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Arachidonate 5-lipoxygenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066060</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016731">
        <property type="protein sequence ID" value="CAB4030239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JIZ2"/>
    <dbReference type="OrthoDB" id="407298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="387" mass="44183" checksum="EABDF61A079B2DB2" modified="2020-12-02" version="1">MAKEEIQRADITYTELIEHLLKTHIVMEPICVIMRRTLSFFHPLHQIFKWHCRGLFVTNSLGIQALLKPGEFLNKLFTIGHVGGVELLNKAYPSMSWADTEFDKNLEIFKWHCRGLFVTNSLGIQALLNPGEFLNKLFTIGHVGGVELLNKAYPSMSWADTEFDKNLETRGVDSVDELPYFPYRDDGLLIWKDVGDFAGDYVRLYYQKDEDVKQDTELRNFANQLSADGTGKNGGIGLFKGFPVKIETRSHLIDVVRRIVFIPIQHHAVNYPVAYYGAFVPNLPTKLYDDPRVPPREFGFDSLPQVHVAAEQVSLSMSLGSIRYDVIFDYGKYLKDDRAKAVVNKCHDRLIGGINDQISARNQKRLANGKLSYPYLLPKWMPNSIHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JNL5</accession>
    <name>A0A7D9JNL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031551</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019239">
        <property type="protein sequence ID" value="CAB4033432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JNL5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14791" checksum="33459455C560FDE5" modified="2020-12-02" version="1" fragment="single">HTQSGQCITKGRLVINTPDLALPYYAVMSDNCLGVESQFRYLNNSELLQNIETGGTFRPTHEKVYRRRLTLFYAVANKSLKYQISRVNHLKQTAAGGLSFHNVNACAQKSKTFPYMGKSSCCNNAEQKFTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JSU7</accession>
    <name>A0A7D9JSU7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="8">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">DNA 3'-5' helicase BLM</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A030332</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020021406">
        <property type="protein sequence ID" value="CAB4035830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JSU7"/>
    <dbReference type="OrthoDB" id="10261556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-0347">Helicase</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00044542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4035830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="469" mass="52973" checksum="8DEF05D62CB1D691" modified="2020-12-02" version="1">MSCLLLNNAIKIAINKLYSHDVKLKDEQFRAVESVLRGKDVLAVLPTGFGESLIYQILPDVFDYMSANSHLRGGCVGSLILVVSPLNALMCDQITKLNKAGIQSFMVTEVVSENEKAQYHISVESLKDLSCTCKILYFHAELCVKNKSFFNVLKSPGFQERVKCLVVDEAHLIKELKTFRPAYGKLDILGSIFANVHFLALTATENSETKSMIIESLQLTDVELIEVNPDRENIFYDVKNRPSHGDDKLDPILKPVANMLKELKLQMELTIIYGTLQTCADCFLYFSQALKKHQYFPEGSEPISKNRLFAQYHAECPDHEKDRIIEELTQGVCTARVLFVTIAFGMGIDIHDIRHVIHIGVPKTIEEYFQETGRAGRDGCPSVATMYYNNFDIRSGKHQVDEVMREFATSNSCKRSIILNYFDHSLKMESDFHNCCSYYRSVCKCPTCLVVTSNSAEDQTTPTPATEHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K104</accession>
    <name>A0A7D9K104_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031448</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025114">
        <property type="protein sequence ID" value="CAB4039241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K104"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017868">
        <property type="entry name" value="Filamin/ABP280_repeat-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50194">
        <property type="entry name" value="FILAMIN_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22235" checksum="FDF72CA9F3086E1C" modified="2020-12-02" version="1">MEVSDVAVTDNKDGSYTISFCPGRGGMLKFEVFISGMPAPNCSLTKQVNWVISNSHGKGAITDGGFTMRGEGGEGEYCWRVGGCCFDSGVHTWKVRLYDYSDGYHNRNYHKGGHTSSEVGIIDYDEINADIVQSEKKWVYKLSVGLGSSEDISLTLDMQKRTLNVKRGNLTYGGKNYQFTARRVSPFFACSSPYIDISLVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KHG0</accession>
    <name>A0A7D9KHG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037019">
        <property type="protein sequence ID" value="CAB4044959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KHG0"/>
    <dbReference type="OrthoDB" id="5987630at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="15973" checksum="3271752AA28E28B6" modified="2020-12-02" version="1" fragment="single">KLPIKDGVPQGSILGPILFSLYINDLPTVAQHCNIESYVDDSKLFLAFSLNELDDAVTKVNQDLKLTFESFCTNYLLINPTKTKLMVFGVPQLVSKLPQDITFTLMDKQLTNSSNAKDLGVTLDPYLNYSDHVANVVSSCMRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KVF8</accession>
    <name>A0A7D9KVF8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anaphase-promoting complex subunit 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011236">
        <property type="protein sequence ID" value="CAB4021036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KVF8"/>
    <dbReference type="OrthoDB" id="308440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005680">
        <property type="term" value="C:anaphase-promoting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045842">
        <property type="term" value="P:positive regulation of mitotic metaphase/anaphase transition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12558:SF36">
        <property type="entry name" value="ANAPHASE-PROMOTING COMPLEX SUBUNIT 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12558">
        <property type="entry name" value="CELL DIVISION CYCLE 16,23,27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="25606" checksum="63460B3B6495076F" modified="2020-12-02" version="1" fragment="single">MHTTCTSLASRVSTLTALIQLLAEDLIGISEDRPESWIAMAHSSSVANKKTRAIYFSQKAHNMDNLNIQALLTKGSLLSSVKRKSEAIDHYREVIRLSPFNYDGNKGLIECYLSSNRHKEALVVAKNAHKCLGTNARTLLLLAMVLAKESQTQEKAKQMLEKAVVQDPTFADAVYDLAGILTKEQNHEGVVELLRKHLSHIKNANLHILLGDNLAALSEYQEALDQYSIGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6K0</accession>
    <name>A0A7D9L6K0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013213">
        <property type="protein sequence ID" value="CAB4024742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6K0"/>
    <dbReference type="OrthoDB" id="6144055at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17212" checksum="053DD0110E8A282D" modified="2020-12-02" version="1" fragment="single">MSTTRTVKCGIPQGSNLGPLLFLLYKNDLPNCLTSSSASMFADDTNVSTNGKTNDELQERINVDLENIHQWLLANKLTLNKDKTEYMIIGSRQRISNLVLTDPKIELGESVIKRVHKSKTLGVIIDEHLLWNHQIQNIVTKASKGIGMIRRIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6K2</accession>
    <name>A0A7D9L6K2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071744</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014095">
        <property type="protein sequence ID" value="CAB4026249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6K2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="9682" checksum="9C7E3E0E4DA92FB5" modified="2020-12-02" version="1">MADEGRTRIVEFSNQTESGMISRAIIALCIFVKGNFHKNAINRTKNIETEYFTVYLLLAYLEDNFTAAWDYVNMPYRKIISLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LBR8</accession>
    <name>A0A7D9LBR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transient receptor potential cation channel subfamily A member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014384</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017298">
        <property type="protein sequence ID" value="CAB4031021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LBR8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="152"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="208" mass="23890" checksum="FADFD1BA1969C69B" modified="2020-12-02" version="1">MEFTRTRCKDKHCDYCLTWNGPPMKGVSQPLPDPQRPMHYMDVSVTPTHTEGGEEREADDWQPRANITKMFNTESISLDQQDLITEFSDKFSGEWETEKPESCGIRKYLDKNKLSKKGKKADVLRKKQNDTIEKVIEETGSDYNSDTGINSDSDEDVILDEFGDDTSSESDEEVDQTADETADVESLPWVVRTRYGRHAGHWNLFQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LIG6</accession>
    <name>A0A7D9LIG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Kelch 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A046006</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017614">
        <property type="protein sequence ID" value="CAB4031415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LIG6"/>
    <dbReference type="OrthoDB" id="6678352at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.420:FF:000001">
        <property type="entry name" value="Kelch-like family member 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017096">
        <property type="entry name" value="BTB-kelch_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632:SF26">
        <property type="entry name" value="BTB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037037">
        <property type="entry name" value="Kelch-like_protein_gigaxonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="BTB" evidence="3">
        <location>
            <begin position="42"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4031415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="595" mass="67540" checksum="B4455C98EF50FA6B" modified="2020-12-02" version="1">MAEIHHKLAKLKPFSDFYLSDSSHGGELLRGLNALRKTKTFCNVFLKTRAEHQGFPVHREVLVAFSPYLKELCENDSATGNSKEILLQELSPSILVSIIEYFYTGVITITTENAQDVFNAAALLQLQTLQTVSENYLVKCTNPQNCLQVMSLAQKWNSHQLLESARQCMGGNFTKVVESSDFPSIEAKDLKAVISGDYLVVSSENEVFGAVRRWIESDREERLRYVPLLMSHVRFRFLPREFLTTTYKHDSVMSVSPLSDDFVHEALMYDTLSPEDQQRVHTARVIERWCSQSTEMLLLVGGVSREPEHNHWTFDPVTSQWYTVSPLQSPRHLFGMAQCGGSLYVFGGLKNMTGDKFLTTVELYDAKLNKWKSVKKTMREARCRFEAVSVGDIVYFVGGMCNDPHQNTLEMYSPTETVEPVKMSTPKLPRYDHCTTVLDDKIYFIGGCTRGHKTLRDVECYDPDQNTWSEVAPLLVPRTGACAVTLDDTIIVIGGTNSKKPLSSCEIYDRNKNKWEYIAPMSECRDHCTAACFNNKIYVFGGSYGRVVQNSVECYNFKTNKWTIVSHLPAMKHGFKCVKTVVNRSLVQPIVFEQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNF3</accession>
    <name>A0A7D9LNF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021478">
        <property type="protein sequence ID" value="CAB4035898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNF3"/>
    <dbReference type="OrthoDB" id="5988509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="650" mass="72270" checksum="4616F0029D01D1EA" modified="2020-12-02" version="1" fragment="single">MGNHSSIINTLTKIPALWIAQSKETFLPQFVYNLCKEYMSSENDRKRYEPVKLIGKQQNKEVWVFNKDVHINADGLLVPVEDRTFLISKDDKLPELTNVVGDFDNGEALRELLLAERELFQNNFAQVIMGHAASGMAANYDLLIREFEGCPTPVLKGEPVSGKTTALKCILSVFGITKFSSECSSKYVEKMQSRTTIPFGWDDSSNIKTLKNVTVNSYNACGSSNLMASFKPHTVPIITTNENCNDIKIKSRWLPILFASISPKLDGQALLKAEKSVRRKRESAHKSISILTSYLHGVISQYENDEDFINARANVQEEITQNNYKVDQRALESFTMLLFCSKKILQKLEMPDLYNIVWEKLATLILPAYCNDVGQGSGEDTNPAKLSKDNLIKDFLKLHLPSAILNKDTKDALKFFDQEIRPKTCTCGIVVAFNIKQAIDCVENIFGQQTVAGITEAAIRHYVKQNGIGCNGRQVKFKALPTGQQLRALHIKRAWFDPVTITKLDSNNSGQSATQTTGVDVHLINQPETMTINDDLDQSAATQITNAGDVQLTNQPETMTINDDLDQSAATQITSAGDVQLTNQPETMTINIDYLDQSAATQITNVGDVQLTNQPETMTINDYLDQSAATQITSAGDVQLTNQPETMTIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LRE9</accession>
    <name>A0A7D9LRE9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Mutator-like transposase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A076119</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021360">
        <property type="protein sequence ID" value="CAB4035775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LRE9"/>
    <dbReference type="OrthoDB" id="5976735at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049012">
        <property type="entry name" value="Mutator_transp_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20700">
        <property type="entry name" value="Mutator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mutator-like transposase" evidence="1">
        <location>
            <begin position="80"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="22677" checksum="F99F72AB2E042FF8" modified="2020-12-02" version="1">MAAHFKNRSLTGKFEKIQKRNRGNIIKLQEGLQSWKNGNISSEVEENKNENEEFEPATDIVINTRESTAKQEIKENLPQGSRIVDINQLRKGLESCPFCKEGPLSLSNVQQEKLYGLASKLYIQCQFCSQTNVVETSLAHKSGASGPMAYDINTKSVLASLHTGIGETHLNGILSVMNIPTMTRASFKTREREAGKVVEAVAGHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LRH5</accession>
    <name>A0A7D9LRH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063218</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023395">
        <property type="protein sequence ID" value="CAB4037716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LRH5"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="367" mass="41728" checksum="1F1210515E5B245B" modified="2020-12-02" version="1" fragment="single">FQPLEDDPNYQAEYPPDMLVDPYKAYRALKEVKCHKSVGADEIPNRILRDFAFELSPVVSDIYNSTLRQGKIPELLKSSIVSPIPKCMPLKTIEDDLRPISLTPQIAKVMEGFTLEPLLADIGDQIDPYQFAMKGRSTTQALVFLQHNVLKTLDRGGSAARVLFADFSKGFDLVDQGVLVAELEKLNVRPAVVGWIQAFLTRRKQCVRIRDKISSFKCLNGGIPQGTKLGPILFAVLVNSLLRDWNFRIKFVDDLTTIEFIPRCSLSVTPFLVNDIYDYASTRGMRLNSKKCKEMIINFLQYRLPFQDALQVGGNTIERVSSNKLLGVYLNNDLSWNLHCDYITKKANKGLYMLRILRRARIGYQQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LTF1</accession>
    <name>A0A7D9LTF1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080384</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023868">
        <property type="protein sequence ID" value="CAB4038152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LTF1"/>
    <dbReference type="OrthoDB" id="6114255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="154"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="43696" checksum="CABA0D31428B9800" modified="2020-12-02" version="1">MSNGNHKTELTTLVNELMTDIDSKPLHPRNKLLVYSRYVLSKISWHFTIATLSKTWVIENIDPVVNQYIRKWLEIPISGTLILRKALKLSPNQSINELWKSTNTHTNIQYDFYNSTKEVLKDFRSEHEDKLQNQLTCQGSFFSSVTKFSLSHLSKVWSTAQSKLPKNIYNFTIRYINNSLPTRKNLSRWGLSSSSECSFCLGPESLLHVVAGCQCYLDRFTWRHNSILNFLANTLQTVNGSALYADVPGFKSPSIITGDTYRPDLLLSLPNGSLYVVELTVGYETNLENNVNRKKAKYKELVKQLDENFNEVNFINLSMSSLGIFAQECSTFLEMLGNVGLDKNYQTYCVRKMMTIAIRSTYYIFCCRNKEWESPDLLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LX88</accession>
    <name>A0A7D9LX88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015822</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025894">
        <property type="protein sequence ID" value="CAB4039808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LX88"/>
    <dbReference type="OrthoDB" id="6016580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="265" mass="30620" checksum="F2E736EB116B461B" modified="2020-12-02" version="1" fragment="single">TGIFPDDWKFAKVTPIYKSENKTLCENYRPISVISNIAKIFEKLVCRQLNTFLDNNNIIVKNQSGFRHNHSTETSLLQSTEMWLKSMDQGQINGVIFLDLKKAFDTIDHQILLSKLQAYGIRDHMLKWFQSYLDQRKQICMLNNCKSDIETIRCGVPQGSNLGPLLFLIYINDLPNCLETTHSNLFADDTILSCQGHLSIDIEYKLNKDLVNAQKWLSANKLTLSNEKTRYMIIGSRQRLKNLDHVPKISINGHQIERVYKKEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M0T1</accession>
    <name>A0A7D9M0T1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028930">
        <property type="protein sequence ID" value="CAB4041781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M0T1"/>
    <dbReference type="OrthoDB" id="5985287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22447" checksum="61CB7BD03A1434CF" modified="2020-12-02" version="1">MADEEDTKLNRLTTNRSRSGDQNESFQQVSKTANVSGKYTDNCFNCGSNYFPGHKQVCPAQGKSCRSCGKLNHFAKVCRSSPMRNQEFRAQNREKSNEIENSIKAIITTPRETGTGSSANDDSDEYTFTLTQGQFKFRPTKVTKTNKGVFVTAKINETDIRLVLDSGATTNILDSASFECRPINLRGPGQYMSPRFYYQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FDV4</accession>
    <name>A0A6S7FDV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000034">
        <property type="protein sequence ID" value="CAB3977188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FDV4"/>
    <dbReference type="OrthoDB" id="3360032at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35465">
        <property type="entry name" value="CAVEOLIN-1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35465:SF1">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS X PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20232" checksum="E4908E8D1A10F995" modified="2020-12-02" version="1">MLVLSFYIIVVLAWLSAATPTENIPIVAIEPNHLYCNQELSNGQSAHYYLTKLQINTGYEFRISYPAVIPTDFIIKDLNKTTATGRKLLNVEKFVFWTDMQEEKHFEVTAFRTGVAVKSSLNDLPVLYDVVVEQLYGGVSIDIWKLVLFASVTIFLALKFCRQPFINYINAENEKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FJE8</accession>
    <name>A0A6S7FJE8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Fidgetin-like protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A065535</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000233">
        <property type="protein sequence ID" value="CAB3979824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FJE8"/>
    <dbReference type="OrthoDB" id="10251136at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008568">
        <property type="term" value="F:microtubule severing ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd19525">
        <property type="entry name" value="RecA-like_Figl-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000022">
        <property type="entry name" value="Fidgetin like 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000093">
        <property type="entry name" value="Fidgetin-like 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047858">
        <property type="entry name" value="FIGNL1_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050304">
        <property type="entry name" value="MT-severing_AAA_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015415">
        <property type="entry name" value="Spast_Vps4_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23074">
        <property type="entry name" value="AAA DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23074:SF17">
        <property type="entry name" value="FIDGETIN-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09336">
        <property type="entry name" value="Vps4_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="14">
        <location>
            <begin position="395"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="194"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="259"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="207"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00035694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00049360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3979824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="635" mass="71474" checksum="2B1D1DFF3133B226" modified="2020-12-02" version="1">MLAMNFNENNGKLLNVWQTFQFKFDDTEKSVLERADAGRSLMFQVEKLFDSGNLNQQQYVAMVNYYENLYSDIVDEQDEAKGLNNFAEQSIALTTGFRNDSKNWKSSLTFESLDDFNISNVPAKDYKISEKMTHKTVTQANSTPYSVPTVAPDINNARPEKTREKYSINHQPFTSSRKQAPGFKPLFGNPNKTDDIMFGSFGKSDGLKSTSSVESNCKQRQQVNRSKDKVPANQIENEDTRDAYDSGFVTAKQQYIMNERKKKGRSADSGPSVGNYGATKKSLGYRRGPSSRFIPPVRNYDDDEGGESYQSRRDNKRPVMSRPKHNSSAEDDITDERLKGIDPKMVELINNEIMDHGPPVNWDDIAGLEFAKTVIKEIVVWPMLRPDIFKGLRGPPKGLLLFGPPGTGKTLIGKCIASQSKATFFSISASSLTSKWASEGEKMVRALFAVARCHQPAVIFIDEIDSLLSQRSDGEHESSRRIKTEFLIQLDGATSGSEDRLLVVGATNRPQEIDEAARRRMVKRLYIPLPEGEARKQIIRNLLKDQHYSLSEEDFEQLMQRSEGYSGSDMSNLCREAALGPIRSISGNIQAITPDQVRPIVFTDFEKAFRQVRASVSTQDLDLYVSWNKKFGSGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPP9</accession>
    <name>A0A6S7FPP9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063054</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000148">
        <property type="protein sequence ID" value="CAB3978872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPP9"/>
    <dbReference type="OrthoDB" id="5960351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11547" checksum="F91013EBC8521BA1" modified="2020-12-02" version="1">MTERYNPYLYSKLTAYRKTHSGETTLIALTEEWRQAADRKENVAVLSTDMSKAFDSLHPSLMIKKLEAIWILSSVASTNALLRTIQQSEIEWKDKHLETC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FR78</accession>
    <name>A0A6S7FR78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A015259</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000188">
        <property type="protein sequence ID" value="CAB3979342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FR78"/>
    <dbReference type="OrthoDB" id="5966627at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="147"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="356"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="240"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="249"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="43329" checksum="E7421D04FF14B61A" modified="2020-12-02" version="1">MWLATVLQGLIEIDFKVSRLNALAISIDVLWSLVDRILAFPLFFLCCVTMYVLCCMVEEYRDDIEKWRKDDENKDKGESEATTSKARSGNGSSEHQTSRDKDTNGSEKKSKDKATNEALEGEHSTIANESKNCGENSARKRFRKIKAAIRTAGLSLESYLMVHFMLLICTFFLGVCACFEQMEVRIAKGSENYTVQLFQVPHYARYINFNGKLSFDTDYTIDAPSTQSAGMLTANKTTSFTQTHGKDAGNGTNNTGENTNSDDIQTKWVKQNVKIVAICSLVKTLESLLLYFLPISLMVRLENRLRRVYEVIEDCDVEEQKNKKLLFDDVEVIRRMCKYVKTAHGLKIFGHTVPAFQAFILAAFGPFIAVVTQLLLAHIHMKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FS54</accession>
    <name>A0A6S7FS54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080986</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000241">
        <property type="protein sequence ID" value="CAB3979913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FS54"/>
    <dbReference type="OrthoDB" id="10060618at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="259"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="214"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="275"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="32724" checksum="75B2BEBE9A027FEE" modified="2020-12-02" version="1">MGKNLIALSGKSKLADGKPVGGRAGRLTRPMIDKLQKYYGNAIRRCVDKKAKSKQEVEDAVKRMQCAIKGVLYHSVKIVDEKKRHQYCPHGESPWCSFKRDKAVGTNTPFLDKSYHLDPVFLEFLIPLFDRLSENKLLKRCLLGLSQNANESVNSLVWNRCPKHRNRGIKSVETAAASAIMQFNIGAAGRHGVMKELEISGGYYTKAGNGKKNKKRVKQANARAQREFKEARQKIRQAKLVEEARLKALEGVTYQSAAFNEDNFNGSSKRKRKTDKTTPKEGKSKQTRKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0M7</accession>
    <name>A0A6S7G0M7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000469">
        <property type="protein sequence ID" value="CAB3982132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0M7"/>
    <dbReference type="OrthoDB" id="10221010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="21642" checksum="9ABA1E602757B3F8" modified="2020-12-02" version="1">MSKVNKDTDTTVKPKMGNEIYDALLLTAGAVGISKASKKILKEPLGTPENAKGMMKLSVSNYTMASAVAGGLFSAFAFAGAGYLFKIFDKNGYAEEAKRHNMAMETLTAEREKYLEGVTNRKNKIAQLKAELAEADRDIKSTNQSLELVRRINELTRKAIPRKPQLSNHYTPSSEVEEYMALFGLLAGGAIGGAAYLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4N5</accession>
    <name>A0A6S7G4N5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A032850</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000698">
        <property type="protein sequence ID" value="CAB3984117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4N5"/>
    <dbReference type="OrthoDB" id="5974263at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd08760">
        <property type="entry name" value="Cyt_b561_FRRS1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1770">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006593">
        <property type="entry name" value="Cyt_b561/ferric_Rdtase_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23130">
        <property type="entry name" value="CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23130:SF171">
        <property type="entry name" value="OS01G0895300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03188">
        <property type="entry name" value="Cytochrom_B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00665">
        <property type="entry name" value="B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50939">
        <property type="entry name" value="CYTOCHROME_B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3984117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="37582" checksum="8D237CCB358CCD70" modified="2020-12-02" version="1">MGGTDAVICQPLGRDIKMSVATLEYSSPDLESQNETTLLEGKYEGGVIYCKFKRPLKAKGSKYLIYAKGSGSTTLNKHEHGDRGCSVKKVDFANNILYELGDCGASGLEKVHGSIMIFAWAFLVVISIFIARYSRSLWKGWKICGNDAWFQFHRLIMGLAVVMTIIAIIIIFVDKEGWSKGAGDHATFGIIVLVLAIIQPTIAFFRPHPNEPRRPIFNWFHRIIALILVIFVVVTLFKGTELLEDSGGDTSSNVMIALIVIAIITALILEYLAFRLRTTKLPDTIDDTTGTLQEEKQGVSGLVWETKVQRILLVMFSLLVFILAVFMIANVAGAGSEDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5V0</accession>
    <name>A0A6S7G5V0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Kinesin KIF26A isoform X5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A085893</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001153">
        <property type="protein sequence ID" value="CAB3987308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="8862460at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057090">
        <property type="entry name" value="HTH_KIF26A_B_1st"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027640">
        <property type="entry name" value="Kinesin-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21608">
        <property type="entry name" value="KINESIN-LIKE PROTEIN CG14535"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21608:SF7">
        <property type="entry name" value="KINESIN-LIKE PROTEIN CG14535"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23081">
        <property type="entry name" value="HTH_KIF26A_B_1st"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00225">
        <property type="entry name" value="Kinesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00380">
        <property type="entry name" value="KINESINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00129">
        <property type="entry name" value="KISc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="5" id="KW-0505">Motor protein</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="604"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="845"/>
            <end position="896"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="923"/>
            <end position="1026"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1083"/>
            <end position="1268"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="612"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="649"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="865"/>
            <end position="878"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="987"/>
            <end position="997"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1106"/>
            <end position="1121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1124"/>
            <end position="1155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1192"/>
            <end position="1212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1223"/>
            <end position="1244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="345"/>
            <end position="352"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3987308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1388" mass="153613" checksum="E84E6BB1775B0404" modified="2020-12-02" version="1">MATREAFAADVAHEDTAFQPGVWCEKCNKRLVELKRQTLKLIVPELNNVIQYEGSLHRGSRLATRIFDQLRVPDTELKSWRDNRCDICSTNVAQLKNEALSMVQTLEDSRLLAAHVPRLATSPPTSPTEGQRPLVTNPSVAESSYNHAVNFPPRYGYMAYGHDPTPAQQLSSSMFARAAYKLRKKQKRNGEPRSPTKLEMTAPITTLLNSRNCSPEPCLFPTNFNNAIRCYPPPSPPGLIKGLAKRKSTGGKVKVLLRISPSFPGETSSFLKVDQKKKQVTLYDPTAVSHVSQKYRRMGVAAPKMFAFDSIFEPDSSQAEICSTALTDVLQSVVNGSDGCVFAYGHSGLGKTFSMVGRDETVHSLGIAPCSIAWLFKLIDEKRERTGARFSIRVSAVEVVGRSENLKDLLQEQSTADSNDATNGTKPSVYLYDDPVSGPQLLNHSELRASTPEKAALYLDAALAGRTVPNNEKDTEETLNSHMFFTIHVYQSRVDKIAGKMGVHGGRSRLHLIDLASCERYNSTKKETSCCSMSLNGLGNVIIALINGAKHVPHKDSTLTRLLRESLGSTTCRATMIGHISPSIPFYTESLSCVQFAARIHRLRRKKGGKGSSTSSSGGESSCDEMRMRKPRIRTSALTEPLREETNNHSDYTSSTGEESCDTVIYCGPDGELSDRDLTDNEGPSHMNKVPVGPKGIEVDEKLRSKLDAIEEKQPEGSRCPSMELEYDLSEEFKGNIEKVPEKGSVENLTLKRRKKIKNNDNCEFWEDPLARVQEQEVGNELLAETAEQDTTCTTGSGDELDRSESVVITTSTGFVPITEAKYSSENDLTSGDNDVIEEELSHSPALDTPLSTFYHLVPDSDSDGQEKVANRSPERQQRHSPKTIPSSPPSPTSKEVRSILENYVVDQMLIKNSAQQNFQSHLNTKDGTNEADGATEGLVPPLTPQKTCVAGTAQISATSPKRVKLACRPRSKEATSSNRKCLSDAGDNRSDTHSEDSYGSTKTDPLHYVKTPRRGIKPCHASSSGSLPREYKVIIRDKMACVHYVGCEMDNDRDIKGHQDTSVQRSPSKAAPVQLRYCGYETNSENDKTDFTPTSPDSQRKATPLTITSRATFAFNQSSLKKPKVEHEPIRTGEPYGPHDAKNSKEKLCAKSDGEAEMNSENDSPGRRGANLDVPRQRSKLKASRRRDSGQGYSSGIASDGSITDSPSSKSPARRRRRLGSEISSSGYESMRDGTTSHVSGSDSADEKGTLVDRSNSGKRHVGTSSDRQNYFDDFERLRLRGIDETRENDSGCVSGSLLDIHKWRIIKLRTKQVELRNELDQAKSRLLLDGTRWSFYLESQTMKPEDPELVEILEKENKRLEKRIRVCKSRVMLVTSFDILPQRSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7C8</accession>
    <name>A0A6S7G7C8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Sugar phosphate phosphatase</fullName>
            <ecNumber evidence="10">2.1.1.-</ecNumber>
            <ecNumber evidence="10">3.1.3.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A084258</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 10">Metal-dependent phosphatase that shows phosphatase activity against several substrates, including fructose-1-phosphate and fructose-6-phosphate. Its preference for fructose-1-phosphate, a strong glycating agent that causes DNA damage rather than a canonical yeast metabolite, suggests a damage-control function in hexose phosphate metabolism. Has also been shown to have O-methyltransferase activity that methylates glutamate residues of target proteins to form gamma-glutamyl methyl ester residues. Possibly methylates PCNA, suggesting it is involved in the DNA damage response.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>L-glutamyl-[protein] + S-adenosyl-L-methionine = [protein]-L-glutamate 5-O-methyl ester + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:24452"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="Rhea" id="RHEA-COMP:10311"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:82795"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>beta-D-fructose 1-phosphate + H2O = D-fructose + phosphate</text>
            <dbReference type="Rhea" id="RHEA:35603"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:37721"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:138881"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9 10">
            <text>beta-D-fructose 6-phosphate = dihydroxyacetone + D-glyceraldehyde 3-phosphate</text>
            <dbReference type="Rhea" id="RHEA:28002"/>
            <dbReference type="ChEBI" id="CHEBI:16016"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="10">
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </cofactor>
    </comment>
    <comment type="domain">
        <text evidence="10">Subfamily III proteins have a conserved RTxK motif about 40-50 residues from the C-terminus; the threonine may be replaced by serine or cysteine.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the damage-control phosphatase family. Sugar phosphate phosphatase III subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="10"/>
    <dbReference type="EC" id="3.1.3.-" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020000393">
        <property type="protein sequence ID" value="CAB3981480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7C8"/>
    <dbReference type="OrthoDB" id="541375at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051998">
        <property type="term" value="F:protein carboxyl O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016462">
        <property type="term" value="F:pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:DNA damage response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:intracellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10880:FF:000005">
        <property type="entry name" value="DUF89-domain-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.930.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10880">
        <property type="entry name" value="Uncharacterised protein PF01937, DUF89, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036075">
        <property type="entry name" value="ARMT-1-like_metal-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039763">
        <property type="entry name" value="ARMT1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002791">
        <property type="entry name" value="ARMT1-like_metal-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12260">
        <property type="entry name" value="DAMAGE-CONTROL PHOSPHATASE ARMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12260:SF6">
        <property type="entry name" value="DAMAGE-CONTROL PHOSPHATASE ARMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01937">
        <property type="entry name" value="ARMT1-like_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111321">
        <property type="entry name" value="AF1104-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 10" id="KW-0464">Manganese</keyword>
    <keyword evidence="5 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0533">Nickel</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Damage-control phosphatase ARMT1-like metal-binding" evidence="11">
        <location>
            <begin position="21"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00045980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048809"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU367030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3981480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="440" mass="50348" checksum="AA2B0E7FB2C34C0B" modified="2020-12-02" version="1">MEKSRPEPLSAKDQGSFAFDTVNRRMPVILTRVIDASSKLASKLTEQNDHEKADDVKNVVHKLSGLKYGMETNKPLELLNDDQADTELWDKCLQETKSLVPGKDLTFYTGAWLLCECYMYRRIFQAFISSSLFKDYDPFSEQKRESFFSTMDSVKSLSENVMKCTSTLTESSSDDAVRLEFETLLQFSLWANKCDLSVSGGEIKDGQHTGMAEQLQHLKAWILVDNTSEVWELLRTIDRNADHEIHIDFVLDNAGFEVFADLCLAEFLLSLNLAKTVYFHVKNIPWFVSDASEKDIDWLIEQMKKSENNYVSQLGVRWQARFKDGSFQFKKHIYWTLAHDNSEMKATAPDLYAELSKAKLVFFKGDLNYRKLVGDRKWPHTTPFAEALWGFCPAPLCSLRTLKADVVVGLCPGQDSKAESKDKQWMVNGTNAVIQYQHNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G872</accession>
    <name>A0A6S7G872_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">IWS1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A074420</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the IWS1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001502">
        <property type="protein sequence ID" value="CAB3989524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G872"/>
    <dbReference type="OrthoDB" id="21124at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016973">
        <property type="term" value="P:poly(A)+ mRNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.930.10:FF:000001">
        <property type="entry name" value="IWS1, SUPT6H interacting protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.930.10">
        <property type="entry name" value="Conserved domain common to transcription factors TFIIS, elongin A, CRSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051037">
        <property type="entry name" value="RNAPII_TF_IWS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035441">
        <property type="entry name" value="TFIIS/LEDGF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017923">
        <property type="entry name" value="TFIIS_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46010">
        <property type="entry name" value="PROTEIN IWS1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46010:SF1">
        <property type="entry name" value="PROTEIN IWS1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08711">
        <property type="entry name" value="Med26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51319">
        <property type="entry name" value="TFIIS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="3" id="KW-0509">mRNA transport</keyword>
    <keyword evidence="7 9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="632"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00037992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3989524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="632" mass="71629" checksum="70F246373FBC4793" modified="2020-12-02" version="1" fragment="single">RPDLTIVTPSEVRDNQEITPKLKIPKGTESIDLSYLRETREPEPEYIPKTVEVTKRADESNKMRAVGTPENVKGMKRSGVYRKMDWLQMYRRARANVGTNSAEVDHQRGRSRKIETAANGAATGSERNTCERVEENGWVEVHRDSEERQGIHNEPGLQGMLTGCSSVCVNGTQAVNLPKEGTKIKFKNHRNSMPVPFVIYADFESILVPEEREVELENPEDKSSTDLYQTHKACSFGLKTVCHYDDKFSDAARNCSICGNDLGEDREIDSIQFMASSLEALFLDNISKLDTEGLPILREGTGEKNYVLHKRNEHLRLIQDFNSDENGGGGMTAKGVKNFISDFDQMMQQKKEDNRKAHRRRKNVDIINDNDDLVVGIIKRMQEAAKEDKLANEAKQAATKKLKLLPTVLKHMLKIDLMVIFVDSNVLPVLKEWITPLPDGSLPHIQIREGILTILEQLPPVDSGALKVSGIGKAIMYLFRHPKESRKNKERAGKIISEWSRPIFGVTANFKSMSREEREERDYANMSKRRRLSSDGVDGGKTPKRIENAIKSDSKALRPGDKGWCMRARVPAPSNKDYVVRPKSNAEYVDFTKTSKKTLNRFEKQKRKFNDKKGGTKQRAVEISLEGRKMTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GB43</accession>
    <name>A0A6S7GB43_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A026487</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000517">
        <property type="protein sequence ID" value="CAB3982571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1482944at2759"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47457:SF1">
        <property type="entry name" value="BTB DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47457">
        <property type="entry name" value="OS05G0345500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="186"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="211"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="420"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="443"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="636"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="661"/>
            <end position="678"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="690"/>
            <end position="709"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="282"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1087"/>
            <end position="1123"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1145"/>
            <end position="1207"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="20"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="316"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="463"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="746"/>
            <end position="773"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="287"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="298"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1094"/>
            <end position="1123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1145"/>
            <end position="1196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3982571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1411" mass="162654" checksum="11D0509198D38A49" modified="2020-12-02" version="1">MTLNDKKLSEDIEQKFWSDEERYVEEIRAIELSREKLKHENESLREDVEALEGVRQKLEEKTREVEDLKTELEDVTQAKKEEKDMMRKLIAEGEEVIAMYQNEVQQLKGKLIHEPAIDFKRGVSGSVEEMRRLIELEYNIGKEKNYQNDQEIEEECLKIMQGSDKKPKDKILGKNTGQMNTKQDGIWTYSWLSLIVILISIPVLFTQFPTHVVMTCVLLYLSTLGYLIWKKTGGCKKILKPGEANDALSKAVSDIYEENQSLRKTVEQLIVRVASETVEKNELAKKTGTSGMTAQDSGARDLGRDSRAASGLGQELAEKAKMIETLTEMRKKLTEEGKQLKAKLRANEGVVQQKDKVIKKLEQKLRDLMDGEGVDLSTEKILQEIRQDDEQKDAKKRAALERFQELTVTVMRNAKGEKTLGGMFVVFVTVGVVFLGVRQSSLLLGSSVLALLCIVMALVFWFIMKSRNEVAKLAEELNLEAERSLESSKEIQELSTLVEKHLEVVTKQKRAISALERQLKVEHGRNENQKLIIAKLTWTIQEGKDIENLLGRSGSYRGQDKKALEHALKTMAENHVKEKIDLFKTMRAHLAEDDVDNEEKRWILQDLKQATRDITAALPSVPQKLNGCKVKELKRFWRVGAVFASCFLAFLWLFYAEYFTLSLLPLIGCAAYVVLKKTGTECDRSCDMKIRRLVLDVLFVCIAISTISLVHSNGYIQQMAFVIVLAMAGGRMLVKKLVMSDESVLSQQKSQEIEELRERVGEEVRRQERMAEQMETWKRLLEVERSYNKESDDVITEVREMEQRTQREVRREIERLRKEKRERLKHIEELEKELKKSTTHCSKQRRQMEELNRVIKELEKKQKQGSREVDVLKELNKYEKEELSVALDEKKKSREEMMKNVQKEKEKVKHETTSKMNHEKKELVQKVTELEEKLSEERKIAKDFLDQVDSELVKNEKMNGEIAEMKSLMEHERETREDLRKRFQEINKIRQDREKVLLDQIDDLQNQMAKQKKTLESITQELEDNTDSSKKEKSQSLYDIQEKQILELQKRLSMATKTIDELRQQEKSTMKDMQDLRDRQGKLLKDMGTLQDKSGQDHRTIQRKQKEIKDLKSSLDKLSRENERMGKKLESAWLESSLGARVVKAEVVNEDKEGHGDDRRGQDGGRRGQDEGRRGQDEGRRGQDEGKNEPAMKTENEATVVNEGLDTSRSEDIAVAKLAEVSENEDYIKENKENNKRGVPADFENKDTQGILYWLGTSGDTEEWKNAAEAGLVKITRSSYGHGKASDVADRKGSWCSTSNKANQWWKIDFGDKRSILPSAYTLQHGWSGVSGAVRNWVLEGSRDGKVWHILRNHVNDETLDKGYAAATWKIDDVNTPYRYLRVRQTGKNEAGKDSLRLSGFEVYGQLVLND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBN4</accession>
    <name>A0A6S7GBN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035667</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000948">
        <property type="protein sequence ID" value="CAB3985976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBN4"/>
    <dbReference type="OrthoDB" id="8065581at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16601" checksum="1CA746485B7FBF21" modified="2020-12-02" version="1">MVKIEELNRKRSSAKKKFDDEVKSFEFVLEARPEIHSLEEAFGEVKVKYKAVREIHDGITDLMVEADIEEADFTNHDIFITEIIAKYGDLLSKLEQYRRKCEVDQTSKGLLVQSQTLFSPHGAAEKEGPEEFACACVNLSNQNGCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDN3</accession>
    <name>A0A6S7GDN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A004069</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001070">
        <property type="protein sequence ID" value="CAB3986776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDN3"/>
    <dbReference type="OrthoDB" id="2441813at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="441"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="2">
        <location>
            <begin position="612"/>
            <end position="729"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3986776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="900" mass="102700" checksum="A9AA12BAF0602DE4" modified="2020-12-02" version="1">MPGANCALVGCSTSRKSDLSLFKLPFAGQGDSEVTVKLKTDARKEWLRFTFNSFSDAKRKSLATGAVPTENLPLKSHESKPKTRQPLVRQNTVEACSTSEGSPPVEMTSADLISDESLEEFASKIKEKIPDPWVITTCNNTEIRIELWDSSYSIPRYILHVDSGLQFSLHVYNWLLPDIHPLYTTHRRRMDSARVVDFLEAIRGEKYLICEGLHQDEHVQSIAKDPGDASHTSFSNFDVMRHSVPNRVDMDSNFGVLVVFRCVDCQLLLGRQVDEEQVICDPCKKLQKNILVQQNRKSRSSSAPAKAKAPLTACSSEKLRATVVAKRLECKQLEDKMKKLQDKIEKSAVSVSEPLEKDLMTIMSGQNLDSTPHMKFFWEQQIHLLKTKKMGRRYHPQMIRFTLSIHCKSPSAYRELRDSVALILPSERVLRDYKNYFKPGAGIIKENIEELKEQTSKFTGIQKYVAVIMDEMKIQENLVFDKTSGELIGFIDLGDPLTTYANVDEETPIASHALAFLVRELCTNLKHVVAYYFTGNVTSFQLFPLFWKVVGVLETTVKLWVIAAVNDGASPNRKLFALHSKLGGTLPDGLVYKTPNLFFLARMIYFFADVPHLIKTARNCLYNSGSGLCSRYMWNDGQYLLFRHIADLFHHDQQYALHQLPKLTLDHVLLTGYSKMKVKLAVQVLSRTVATCLLESEDPSVVGTAMFCQMINDFFDCSNVRSLTESERKRNDRIKPYESPDDQRLVWTKDTFLKYLEDWRSSVAKRSDHPYTATQREKMFLSRQTYEGFKITGHSHIEAIKFLLSEGFSYVLSERFMQDVVEDYFGHQRTVRGRSDNPSAQQFGYNDLTIAAQRNIAPSVSGNVGGRYGKQKWFSVSEEPVKKRVKKKRNNLFQTVTFQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDN8</accession>
    <name>A0A6S7GDN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">BRCA1-associated RING domain 1-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A075314</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001176">
        <property type="protein sequence ID" value="CAB3987439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2384350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070531">
        <property type="term" value="C:BRCA1-A complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031436">
        <property type="term" value="C:BRCA1-BARD1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0085020">
        <property type="term" value="P:protein K6-linked ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd17734">
        <property type="entry name" value="BRCT_Bard1_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd17720">
        <property type="entry name" value="BRCT_Bard1_rpt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10190:FF:000006">
        <property type="entry name" value="Breast cancer type 1 susceptibility protein homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039503">
        <property type="entry name" value="BARD1_Znf-RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171:SF8">
        <property type="entry name" value="BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14835">
        <property type="entry name" value="zf-RING_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="94"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="300"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="548"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="603"/>
            <end position="663"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="703"/>
            <end position="809"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="831"/>
            <end position="866"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="902"/>
            <end position="955"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="102"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="131"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="156"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="190"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="205"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="224"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="309"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="10">
        <location>
            <begin position="345"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="359"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="377"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="404"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="551"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="607"/>
            <end position="618"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="622"/>
            <end position="636"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="703"/>
            <end position="712"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="10">
        <location>
            <begin position="713"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="734"/>
            <end position="746"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="800"/>
            <end position="809"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="831"/>
            <end position="855"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="921"/>
            <end position="934"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="935"/>
            <end position="947"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3987439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1342" mass="148953" checksum="E4CF5CEE12D76311" modified="2020-12-02" version="1">MEWTRTRSVLVELGNLLTCAICKSYLKDPCTLDNCDHNFCRKCIEESLGSESKCPECGLFSWVKDLRLNHQLATTVNMTLKLQSLIGVNMEVEDSEPRVQGDSESLSGNTFTFSSDKEMPDENCNEEQGLFSGNESVSTIKSGTNTKESDSEGETRQTVNMTQPRTSVIESTGLRQHTRTAQTTTSPGLKRNSSNSGSTKKNKNMAKQPNITVQNTRESDSEASHGSTAETTTDLTNSKQRGNARNLAIKHNKRSKQPCVTFPRHPTDSETDSESNHASTPDVTAESANVKYCNLRKSARGRGHKKITKQPSVTLQNDTESADSVTNDASIVETTTKSTNDKQHTNVRKRATRRHKKITTQPSVPVQSTRESDSEASHTSTAETTTCLKRTNKSEPNRKHNNKTKQASVAVQNGSTESGGETNHSSSVATTTENTNAKLCSNVKKSTTVTEQLKNTKQRTILNSATDTDSETEANNAGTAAITKARTSIKESSSKSRSNTIRTHNNMTKQRAFLSNIAESDIETKEETTKESTNAKQHTNVIKPARAGNKLSKQPTVMNSAADTQSESKAINASTAEATSTKEHSNMKQRSNVRNLDAFRGGKKMTKQPSITEETSTLEPMETERIHLRETTETKTTKSLHRKKKIVTQESISSSKRADRKVSGQNIRKTYLFRNKQNPISKINSNLTGVPFDFTQQEDPFHFSFTEDRDNDSGSDDNDNHDDDDRDYENYYDNDGHNNDEDHENRLDDDDDDHSNDDGGNKPPLRSISTKNTLTRGRKTRGEKSNSFGIGHDDVENNKGILQNTRSTNTRLRHKIKRSVTAEHTEKKVQFTHLKDRSSNHDQNDQVRVEKDNKKTSSNGLKYDQKVVGDEDKENVILNIKRRRVRGKRYNIRQYFINVDRADTPESSSDDAPAPQKKSRNPSISSQNTRKNITSSQNSQSAGGSSQKTRNKKGETPLHLAAIKGNLALANELINEGADPNVKDHAGWTPLHEACNHGHVDIVKLFLDHDALINIPGLDNDTPLHDAVANGRLKVVKLLVARGAVLTARNKQGLLPMDYAVTKAMKAALTPRDVSSSTKPSENYCNDNVKISSESCRQSQVILGTALKTQDQATLKICVKQLGGTLVDEFDESVTHVVTSVNENGQCPRTIKYLCGILTGKWIVSFEWIKDSLRQRQWLDEDVYEVEGTVGKTCNAARKARLNILQQMPRLLDGCSFFLRGMFNPPTVSKQDLIKLIQLGGGKLLHREPKVRDDDLTSVPSSPIVTSLSRAPEVAYHAPANSTLSCCTEFILYDSVSGDQPKTVYSPVLRTAPVTWLMDCISSFQFLDIPDVEIVYIPDVEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDS8</accession>
    <name>A0A6S7GDS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027079</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001876">
        <property type="protein sequence ID" value="CAB3991564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDS8"/>
    <dbReference type="OrthoDB" id="10410412at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13777" checksum="96A8B7B104C27ACF" modified="2020-12-02" version="1" fragment="single">VEISSKRGGKKPKRKKPHTSCSALQQCPAEKYCIPFISKCTRGNEVFRKECYIDAHCPDDETCSISVGFCLAKPKCRHMKPYSFCRKGWCPCPDGYECKGRFNHQECLPIEVGSGEARIIVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GK35</accession>
    <name>A0A6S7GK35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078728</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001923">
        <property type="protein sequence ID" value="CAB3991823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GK35"/>
    <dbReference type="OrthoDB" id="5988920at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309">
        <property type="entry name" value="KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309:SF1">
        <property type="entry name" value="MYB_SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23178" checksum="1E85C1FE2C9A9E5A" modified="2020-12-02" version="1">MRWTEEHDIVLCREVLVAQPYQYRPQSAERGSAWTSIANELNAVQEIRFCVTQKAVRDRMKLLVERHKKKTREEESASGISPEESEIDEALDTIIELIDDAEQHFEKAWPEIQDNMAICIRNVLPHSLFKMADLYRLGIANVCFSNFQRFSYINPSSARRKHHLNTRSCNRTNFKTVQMGQTSSRELYSYLISSHIPDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GM85</accession>
    <name>A0A6S7GM85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nephrocystin-3, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A042264</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001246">
        <property type="protein sequence ID" value="CAB3987867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GM85"/>
    <dbReference type="OrthoDB" id="5989885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45641:SF19">
        <property type="entry name" value="NEPHROCYSTIN-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45641">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="3">
        <location>
            <begin position="23"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3987867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="823" mass="92745" checksum="728B7CE838D1CBA3" modified="2020-12-02" version="1">MVPHFIGRQQECEEIMRVLTSTSAQVVSVSGPPGFGKTSLAIAVGHQLRQLGLPVYFLSLRSVKTAEKLISELLNTFAHTSSDLTGRERSKLCTLLSVIPSNICIILDNADNLFESSGETSQDCLDLLEKIFSCCKNVSFLLTTRMSLQSVLGRKFDDHMSVDVASLERKSSQMLVQELVAAADESECCRVAKVCGDVPLAIKLLCGQIVDEKKSIFQFLDNFSRSSKTVPDLLDDPDAPNDQRLKVLFESYFKRISREEQEGFVCLSVFVSEVFDEQAAVNVIGGDEDAAKKTLLRLKRKSLVEVSSEAGLLSFHPLIRSFGSEKAADDMREVAREAERRFLSYYVKLFEDLNNQFLAGNSLLAFHDFEYSRENMVHSLSEGLQNETVCYAIFDVLSDADLFLDTIFYFQHERIFQEIYKLAIAKAKEQRKFKGVHQLLIAKAFAQITWDYGATLALLKEAEEIEKQNPLLPSEVAMRKRMCYHGIQLLSHRATAKGSKMIETGVSLLSSENTVLKVLCSHILALITRHEQKSSYYRNIVLTECANRPSLYAFFQAIQENDCANESGDENPKALSQPLILPFALLINDIVECYDMKEIKIEQESPAAMQLDLNNFIGEYGRLNPDTAARYHNVGLILGSQKNYYAALTYHYQALDIRLKLYGLNHADTASSYFQIGRAQFEKKDYKSALQSLEQVLDVRKNLYGKIHPDISIACSHVGVTKYRLKEYDSAMHWHQQALNIRVALYGKEHPAVATSYYCIAECQCEMQDYDSALESCQQALDIRIGLFGQDSGATSESYDHLEFIRSLKKVCESSLELQSKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GP75</accession>
    <name>A0A6S7GP75_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sex-determining region Y protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Testis-determining factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A055467</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Transcriptional regulator that controls a genetic switch in male development. It is necessary and sufficient for initiating male sex determination by directing the development of supporting cell precursors (pre-Sertoli cells) as Sertoli rather than granulosa cells. Involved in different aspects of gene regulation including promoter activation or repression. Binds to the DNA consensus sequence 5'-[AT]AACAA[AT]-3'. SRY HMG box recognizes DNA by partial intercalation in the minor groove and promotes DNA bending. Also involved in pre-mRNA splicing. In male adult brain involved in the maintenance of motor functions of dopaminergic neurons.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus speckle</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SRY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002261">
        <property type="protein sequence ID" value="CAB3993435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GP75"/>
    <dbReference type="OrthoDB" id="6247875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016607">
        <property type="term" value="C:nuclear speck"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007548">
        <property type="term" value="P:sex differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd22004">
        <property type="entry name" value="HMG-box_SOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.30.10:FF:000002">
        <property type="entry name" value="transcription factor Sox-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050140">
        <property type="entry name" value="SRY-related_HMG-box_TF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270:SF161">
        <property type="entry name" value="SEX-DETERMINING REGION Y PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270">
        <property type="entry name" value="SOX TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00886">
        <property type="entry name" value="HIGHMOBLTY12"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0010">Activator</keyword>
    <keyword evidence="5" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="4" id="KW-0221">Differentiation</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0726">Sexual differentiation</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="HMG box" evidence="14">
        <location>
            <begin position="10"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="73"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="13">
        <location>
            <begin position="80"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="90"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00045821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3993435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28629" checksum="7177E50F39DE220E" modified="2020-12-02" version="1">MSSRQSQGHIRRPMNSFMVWSREKRCEILKTNPGMSNAVISKKLGTTWKSLSDEEKRPYVEEAKRLTWQHKQDYPDYKYRPRRHGKGKNKTANNPRSSCSPGKPEVTFTSDWNLSQTKSAFTLKQPGMLQTSAFQHEHRPSTLFLSENDTSRYYLSYPGYTPYSPRLYSSPTQLSPQMVCVNDVFSPFRHVAAVTDPGIPSAYKPEFRTSPERWTYVPTGYTSPVEATRFVFNGGQVRQNDVRVSGYCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GT19</accession>
    <name>A0A6S7GT19_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Exonuclease 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A033720</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002547">
        <property type="protein sequence ID" value="CAB3994825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GT19"/>
    <dbReference type="OrthoDB" id="26491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017108">
        <property type="term" value="F:5'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09857">
        <property type="entry name" value="PIN_EXO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014905">
        <property type="entry name" value="HIRAN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044752">
        <property type="entry name" value="PIN-like_EXO1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006086">
        <property type="entry name" value="XPG-I_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006084">
        <property type="entry name" value="XPG/Rad2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006085">
        <property type="entry name" value="XPG_DNA_repair_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081:SF9">
        <property type="entry name" value="FLAP ENDONUCLEASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081">
        <property type="entry name" value="FLAP ENDONUCLEASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08797">
        <property type="entry name" value="HIRAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00867">
        <property type="entry name" value="XPG_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00752">
        <property type="entry name" value="XPG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00853">
        <property type="entry name" value="XPGRADSUPER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00484">
        <property type="entry name" value="XPGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00485">
        <property type="entry name" value="XPGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="11" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="610"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="8"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="10">
        <location>
            <begin position="617"/>
            <end position="627"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3994825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="837" mass="94732" checksum="2130F0146D077482" modified="2020-12-02" version="1">MALSKRKRDVEDEDQRKRARINDEDIQKIIDMVSKNKSVGRSNITPDSMAEIAQMARDNINQRNNSLRSNGRRNFDINDTDIREIIQLVRKNNNRPVKSNAFNVERTHVHRRLGYNEYIYHMSIGVNNASTIPDFLENLRLVFSYLINMMKYIASSDTDKALFISLEQHITGTTNCCFAIALLVGRSFLEKDNNSTKINQNRDNDLNTLYTDEKIADVYNKCNMVRGGVRVDQLHVSYEKYLSVDNIDLVSWLGEHMQIKQMGIKNLFPFLKEYCKDVNLADFAGKTAAIDALCWIHRALAISVSVDGNQERQVASFVKYLDYSQLSSIFQKHLTLVRSAGVISFVVFDGSPLPAKANETAKRQRAKNDALRRANEAGSLEEQNKLLSQGISISFEDISTCIEVCVKENISYIVSPYESDAQIAFLVKHGHADFVITEDSDLLTYGCKEIFVKAKMCGTGQKLVLAQVLEGLKLSFQQFQKLCVAAGCDYVQNVKGIGIHRAYALVCGNHLLEELAKKGAPDDYEENFTNALVVFNHQTVFSIDSMKCIPLNEWNKPVTNNCKLQHFCGIILDDTTSINLASGNLDPKSGVKVNNYPLLKQVFIDNDNLNTTNEDQSASEETDNETNENERLEVDIIQIHPISFPYKIPSFPVITVNLRKVIVSITLGHYSCMSSCSIDIDNKSFLVLWELSRDLPANVPTTSKSDDNPTDELGEPHCLPFKVLGSAYDTSRQNSLEEAYEYLYDYNRPVFVKLEAEPDNKHDKNAIGVYVMTGDFYNNVGYIPSELTKYLHPLLGRKDLDVSIKRIRFCTTYLKIGFYLTIEITEQPMAKRSCPGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H232</accession>
    <name>A0A6S7H232_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003249">
        <property type="protein sequence ID" value="CAB3998015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H232"/>
    <dbReference type="OrthoDB" id="5876180at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22426" checksum="1F857A155C5C03C1" modified="2020-12-02" version="1">MPEAFIPIDVCYDGPVSPVAIRSCLGYSVFGRMGKEIEAQCSTACTSAVHNLSDIRIPRCFIVTKIPRESIELHMFSDASEVAYSASAYIRITDDQATRLQEIHEHTKFDQWRFVPGKLNPADDRSRGLPIEVFKAKCRWLSGPDFLHQSVDQWPCTTITKVLEDGEGDLTKQSCQNVVAVGNGLSELLKRFSSWSKLQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H3X8</accession>
    <name>A0A6S7H3X8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003075">
        <property type="protein sequence ID" value="CAB3997339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H3X8"/>
    <dbReference type="OrthoDB" id="429991at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051291">
        <property type="entry name" value="CIMAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010736">
        <property type="entry name" value="SHIPPO-rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21580:SF28">
        <property type="entry name" value="BOREALIN N-TERMINAL DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21580">
        <property type="entry name" value="SHIPPO-1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07004">
        <property type="entry name" value="SHIPPO-rpt"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="328"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="367"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="370"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="460" mass="50354" checksum="17BD726DD9D2EBEC" modified="2020-12-02" version="1">MGEYIPSDGDKALTQQALSGPGPSTYAPVIRLTKPMAAQYSIVGNLKDKKEFSAPGPKYDTSENMIWNKKTRTLKAKLETSPYRPKSRDHLTCSLGSAAYKVEYYDTGKHAPRCTIGSRFNEPIILGPPNTAVEPVDTKGFTAPGPSYSPFGARGMEKSFGLKFKPIRDKDVPGPAEYNIKSSDRGPEYSLGHKLGDQSVFDGPGPGSYDIKSDIGAGVATSIRGRQRVRAKYSVPSPNTYTLPDTFKDAPRHSMTYRTFETEVCATPGPANYDQICRKVWQAPPEFSCRKQCKPSFPAILNYPEYGLMKNESVGPDTYDADKGFDKNNSPAHSMGKRNRNVTNDYPGPNHYKITVPCRPDAHKAPEFSMGQSHSKKVSNSNGPGPAEYHPKVKKTAQGYSMSSRPRPLKTVKPTPAPNAYKVCKGQTSKGVYNGCSASLKSRASPYVYSGFPNLSRITT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9U5</accession>
    <name>A0A6S7H9U5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Large neutral amino acids transporter small subunit 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036109</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003680">
        <property type="protein sequence ID" value="CAB3999827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9U5"/>
    <dbReference type="OrthoDB" id="330047at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027197">
        <property type="entry name" value="SLC43A3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20765:SF0">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 43 MEMBER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20765">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14405" checksum="A0793E6AC128492A" modified="2020-12-02" version="1">MTLTGTALLLTDSPLGVIRQMLTAEYILAVLYLGVHNLLLWFYVGYFNSYLEFMADNDKDTINNYTEWFGVMQFTGFFFAPIVGFVMDWKPKTKRNKKTDIGFVAGYLLTSFLALILNILILVPIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEQ8</accession>
    <name>A0A6S7HEQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080956</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004135">
        <property type="protein sequence ID" value="CAB4001613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEQ8"/>
    <dbReference type="OrthoDB" id="5978872at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954:SF3">
        <property type="entry name" value="PROTEIN CBG08539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954">
        <property type="entry name" value="RETROVIRAL PROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18858" checksum="305359939420B207" modified="2020-12-02" version="1">MVAAERNELERENQDDKTIRRTKIDIINASKEENVDELVTQGIEESDNAIAELERVLLELDDEFSICQSVKSFELSSKLELRKFSGKICEWQEFWDGFSSSIDNNEQLYDVDKFAYLRGLLEEPAKSTIAGFSLTEANYKSAVELLKKRFDKKSAVQRAHVNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFI0</accession>
    <name>A0A6S7HFI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014118</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002458">
        <property type="protein sequence ID" value="CAB3994411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1262810at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030544">
        <property type="term" value="F:Hsp70 protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007842">
        <property type="entry name" value="HEPN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052972">
        <property type="entry name" value="Sacsin_chaperone_reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15600">
        <property type="entry name" value="SACSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15600:SF42">
        <property type="entry name" value="SACSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05168">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00748">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81593">
        <property type="entry name" value="Nucleotidyltransferase substrate binding subunit/domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50910">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1622" mass="185896" checksum="525A3EE881B56029" modified="2020-12-02" version="1">MKKQVLGPAYASLITKAREYIPHCEKDLDKIYFSTAENATKALNWYHNLFPNPFADPKWSILAVAVYQCLKETPILPVVSYARGTVVTEEDKQGECGPSKSTDARFPRKCEETACSSGSFRNVFGKYSYYQPTYQESARESNSEHMKTARYTTFAERRADAPTKCYIEWLPPNIVYFTEEKEREIRQLLLAALLQIHMPVLLYTPLEIHEALLKSEVESHVLTPENVIKFLLTSQDENSRCNIGKLPVQLNSSNIQSKSNLRSILEYCEEALIKSSKCIHGLPLLLTDDNLLRTFSSETPVYCSLFSKLFPNKAFKFVQCDFVRLLSTFCVLQPDIIRNLTIQSLATEFMPDVFNGKLELGGKEHVPWYYPEEGVLSKEWFRRLWKFLQNAENAEKKIVDGEYFIATCVQDNNITNQSSSLVKFLGKYPIIPTMDGKLATVDNAKTVLAVIDDKEGNYLEQKVSQILKSLACPFLDTLITKDALSVILRLVADPHRISDVLHVLNYMNSTGILDMSKFDDEKINTLLRYFQVDWQNKESMNIAKSLPFYKGVDGNYHSLSSYWSYIQVPSGLPDDGIKELQSMDGERKLFLPSSLTSELGRLYNALGIMVDCDISKFYITYVLPNFSSFSRKCQIEFLTNIKSMTHYMSKELKQKLQSTSCIPDQTGKLRVASSYFNPHNELFKVMFRPGDNDFPTAPFNKRNWLDFLVKIGMKEDCDEQQFIKFASGVAESARGMSKYDMNIISQSKALVKYLLESGGKNWFKDTISQIEFVVPEEVEIELSSLHPQYCVNGKLEFVSFRESVPWKDRHLVWTCAKLLPDWAYPDNIYLASSSLGIPSKPSIESVVEHVKKISKCATDTIMSDSILPEKLIEVFKDVYEFLKGMMQNCAKNPPSPNCNEECRNIGKCLTNIACILLSKERCLVKGEGLSFEDTGEKLKPYFHVVPRDYVQYEHLLKRLGVTEKMTPSQMANVLKSIKDSCAEITMNSEEQQKACFATSVLLESLRGNSTEVESRLSNCEELNLPSMKKRLIKSSKLVCKMQPRLRESVENQGYEILYPLEKCGLKRELEDAYLNALPKRLRPTPLSSLVREELDPLCKRNMTCIYCTEMDCPFIQKFILVLRSSQFEHGILRLLKHQKEKSTLDDEDRARAARFTSTKLTVIKCMRQVQIHLVNAESKQPLPNSASVKTCQVEKQGNSWTLYIQHEFGGRKHHAIFAKAVNEIMDGCLKEIGELSDMLSCDSPSQIADVLNAHNVAPDYNEESEQLGQPVPNVYHYLMIQNPLCHFKEGTRVAYGNEGSERNWKEGEQAEESTTYTLAKILVRANAVDKAAREFDFNAQYKIDLGRKTEFRTVSVLDIYSYHQDDKGNPVSGDTDETQVDVVAEKCNITRALNLAKKLKSLFQRRKVLRRLFLHWFRCKDPEVAAEMTTFIENEVTRLEILRVEETWFYTSYWRRWGRQERITFSSYNHWMSFGDYYSASEFISPNKAEAERWIKQSKADLNVATKLFGKSYSQVCFLSQQCVEKVLKGVLYAKCGMPRRELHTHEIYRLVSSASRLKGAPSELDRASKVANYYLPTRYPDNQPFPKVPAEEYDEKEAREALNVAQTVFTALEKFSHHNDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWS8</accession>
    <name>A0A6S7HWS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044222</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006359">
        <property type="protein sequence ID" value="CAB4009157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWS8"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26785" checksum="21587B150438DC4D" modified="2020-12-02" version="1">MNNLGKLLCKRLMIRVGSEIVYDNNGESLIEIYKDLWKMDSKRANMVEYGIMNENTRKLLSKDDSADQTAKTEGAYDLVMAKVYKEQKMKLGKILNDHGPYAPYNMKSGFEYTITLPKADKIMVAQSSEKVEGYTLKNIHLEYETIENEELAKRVNEGYETGRSLSYEHTTLLKTTVWAKDATRFNESIDVPRESMRAVVLLFRKRTVTDSEEYVFPDIKKVKVTIKGKPNAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXS9</accession>
    <name>A0A6S7HXS9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CCR4-NOT transcription complex subunit 10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041319</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the CCR4-NOT complex which is one of the major cellular mRNA deadenylases and is linked to various cellular processes including bulk mRNA degradation, miRNA-mediated repression, translational repression during translational initiation and general transcription regulation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CNOT10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003190">
        <property type="protein sequence ID" value="CAB3997797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXS9"/>
    <dbReference type="OrthoDB" id="25157at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030014">
        <property type="term" value="C:CCR4-NOT complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017148">
        <property type="term" value="P:negative regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031047">
        <property type="term" value="P:regulatory ncRNA-mediated gene silencing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039740">
        <property type="entry name" value="CNOT10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12979">
        <property type="entry name" value="CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12979:SF5">
        <property type="entry name" value="CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0943">RNA-mediated gene silencing</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU367083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="9254" checksum="89CCE2E210068FE3" modified="2020-12-02" version="1">MLHDGRPLVAFDCLIESVQVYQSNPRLWLRLAECCIMAHQMSLIEERTVGHAKKSDLVHSVVGTGPFRKIVLATPVEPGNKNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4U2</accession>
    <name>A0A6S7I4U2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Epsilon-sarcoglycan isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A021542</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007615">
        <property type="protein sequence ID" value="CAB4012736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4U2"/>
    <dbReference type="OrthoDB" id="10019906at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016012">
        <property type="term" value="C:sarcoglycan complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008908">
        <property type="entry name" value="Sarcoglycan_alpha/epsilon"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048347">
        <property type="entry name" value="Sarcoglycan_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048346">
        <property type="entry name" value="Sarcoglycan_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10132">
        <property type="entry name" value="ALPHA-/EPSILON-SARCOGLYCAN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10132:SF14">
        <property type="entry name" value="SARCOGLYCAN ALPHA, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05510">
        <property type="entry name" value="Sarcoglycan_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20989">
        <property type="entry name" value="Sarcoglycan_2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043445075" evidence="3">
        <location>
            <begin position="23"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="280"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="Sarcoglycan alpha/epsilon N-terminal" evidence="4">
        <location>
            <begin position="58"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sarcoglycan alpha/epsilon second" evidence="5">
        <location>
            <begin position="131"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="330"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="333"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="351"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF20989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4012736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="45285" checksum="EF812BA741C6D9CF" modified="2020-12-02" version="1">MALTGLIVRFLTLTVLVSFGNAALMMDFPTSFRKGFFMKYPLMKGEFAPNNTLADLEVSFNFSTECDYPQLPSWLHLEQRRASAPAFLYGAPGNWDESTKIEVIGWDKETYSTVRVVQDVHVTDDDFPFFQAEFFIKNKTLDKFLDDGDDKLIAKIVKDNYWLSNDLGLTLVMSAIGHGGRVPLPHSNNHEGVIVRVGSSQMWPEANSSTLQPGKEPSVDYFKNMGFEINWSRFKWIDLRVVKSPEAERQALLPPDRIIRAVSYSPPALDESARDFDIEFILVVVIPIIIILLFVLILSIIMCFGREGKRKREQQTPNLDLTHHHNIQRSTLRLRELSKPREPDNSAQHPGSEDPTRPTHGHGDYTRLADDDDDRTDGRNAPPPYRMPPGSAGKGQAQQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6B6</accession>
    <name>A0A6S7I6B6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008134">
        <property type="protein sequence ID" value="CAB4014064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6B6"/>
    <dbReference type="OrthoDB" id="5984148at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1198"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1198" mass="136701" checksum="8569442A94E1CC70" modified="2020-12-02" version="1" fragment="single">GVIVVVADLWTECAAHNEYEMRVMDYMARMTKYLSVKTHAENSNGSNESGSSLGSTCKVQVRLPKIELPTFDGDILLVGHVRSVESMGEKYSSETVAPVLVPLIVDKLPKKLVEKWELEIGDKKEDCLPIKTLFTFLEQVIRAKESSTQAPNVESKPPKNISLKEGFHKNPSFRRSSTSALCSSTQTQEKECVVCGKDHNVWSCINFLSLTVKERFRKVSAKGLCFLCLEGGHRSNSYQLPPNRTHPDKTEATEGSQTSFIKQSVIEELGLDGPSVKISVSGFGGKQDKACLRKRISCTLAPVDRPRCSREFEALTTAEICHPADAVEVNPANWVHLKDVNFPEEFPREQKPIDVLIGLDFYYSFVTRDIVKADLSEPVAVRTTLGWVLCGPTGTASSESTVSMNVQVNTNDQLNETLQSFWNLESIGIKSDDMPLLNKTEETVLNNFKESLTFKDGRYEVSIPWKENQVTLKSNYIQAERRLYSLEKRLLEDPLKAKIYQDTINKYVEDGIAEEVPANEIKPVDNRPVFYLPHHAVIREDRQKTKTRVVFDASAKDSEGTSLNSCIEAGPALQPDLCGILLRFRKKKIAVTNDIEKMFLQISLREQDRDSHRYLWRDLDLEASPKVYRMTRVTFGVIASPFLAIYEVNEARELQQSAKELMAQAAFNLTKWSSNSRELLEVIPEEDRAPNSLINLNQSFPENCSITKALDPSVWRYCPGPQNPADVPTRGMSSNELKESRLWWEGPAWLRSSEEEWPKDLRSASLNEHVEIERKHHASINSYVIQPQEIFIDFTRFSKYNKLLRTIAWIKRFIYNAQVKQDERRQNVLTGLEIQESERWLVNRIQIERFSEEISLIRQSKVLNDSKLRNLNPFLCQSTGLLRVGGRIHKAELPEEEKHPIILPSDHPAVELFVQAIHRREMHAGVEHTLSVVRQRFWLIKGRATIRKIVKRCIVCRQFYTKPVSQQMAPLPADRIVPAPPFTNVGLDFAGLLYLKNRGEKAYICLFTCAVTRAVHLELVSNMTTERFLLALRRMVARRGMCSIIWSDNAKTFKCAKKELQNCWRILESEETRTALSEKKIQWKFIVPRAPWWGGFYERLVKSVKLPLKKIFGNAMLDAEQMTTILTEIEAQINSRPLTYIGAEPNDLKALTPAQILIGRNLQAFPSKDTKVTEHTSNALKKRLQYHQRLYSPPYPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IAB6</accession>
    <name>A0A6S7IAB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A071743</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008063">
        <property type="protein sequence ID" value="CAB4013883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IAB6"/>
    <dbReference type="OrthoDB" id="10397706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028959">
        <property type="entry name" value="Imm41"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15592">
        <property type="entry name" value="Imm41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="55"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="152"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="198"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="205"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="221"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="26279" checksum="FE6B8C5598FFAA69" modified="2020-12-02" version="1">MAYGLLQTKIHLIIGLAGLKIFCLGILLFASSYMIEDLLQSDKFGNDFGKNHCEYWAALPTILTGVIIILSVTKHFKRYHKFLSYLRTCCTLIVMVLALGVMIEEAGDNGWSHSLADGYHCKNLEHPDIHEDQESFQDRKETCEILIKADKWFYVMLFTSDIVLVVSIIALFAMFAEWMVFTALKTSENGEHSVQISERYERFSSSEPQEENTQQMWEGESGDKIPLHPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBX7</accession>
    <name>A0A6S7IBX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089654</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008313">
        <property type="protein sequence ID" value="CAB4014463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBX7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="10284" checksum="2F45AF10B05DE2D7" modified="2020-12-02" version="1" fragment="single">NRFLVAKTFWWVIFIMAETDKLTLDPEKGDREEEPPKKKSMMEEIKEAKQQSANSFSFAKIFCGIVFGSIIWTVMLAIFNIIPITIIVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICP4</accession>
    <name>A0A6S7ICP4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase</fullName>
            <ecNumber evidence="9">2.1.1.205</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">2'-O-ribose RNA methyltransferase TRM7 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A029175</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>cytidine(32)/guanosine(34) in tRNA + 2 S-adenosyl-L-methionine = 2'-O-methylcytidine(32)/2'-O-methylguanosine(34) in tRNA + 2 S-adenosyl-L-homocysteine + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:42396"/>
            <dbReference type="Rhea" id="RHEA-COMP:10246"/>
            <dbReference type="Rhea" id="RHEA-COMP:10247"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:74445"/>
            <dbReference type="ChEBI" id="CHEBI:74495"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.205"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. TRM7 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.205" evidence="9"/>
    <dbReference type="EMBL" id="CACRXK020008597">
        <property type="protein sequence ID" value="CAB4015137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICP4"/>
    <dbReference type="OrthoDB" id="289250at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106340">
        <property type="term" value="F:tRNA (guanosine(34)-2'-O)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002128">
        <property type="term" value="P:tRNA nucleoside ribose methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.150:FF:000040">
        <property type="entry name" value="Putative ribosomal RNA methyltransferase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01547">
        <property type="entry name" value="RNA_methyltr_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_03162">
        <property type="entry name" value="RNA_methyltr_E_TRM7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028590">
        <property type="entry name" value="RNA_methyltr_E_TRM7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050082">
        <property type="entry name" value="RNA_methyltr_RlmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002877">
        <property type="entry name" value="RNA_MeTrfase_FtsJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015507">
        <property type="entry name" value="rRNA-MeTfrase_E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10920">
        <property type="entry name" value="RIBOSOMAL RNA METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10920:SF12">
        <property type="entry name" value="TRNA (CYTIDINE(32)_GUANOSINE(34)-2'-O)-METHYLTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01728">
        <property type="entry name" value="FtsJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 9" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="291"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="293"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="329"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_03162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4015137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="339" mass="37441" checksum="AE69113E5983CFE9" modified="2020-12-02" version="1">MGRTSKDKRDIYYRRAKEEGWRARSAFKLLQIDESFNLFEGVSKVVDLCAAPGSWSQVLSRKLVKDGQNKTKIVAVDLQAMAPLPGVIQIQGDITKVSTANEIISHFEGEHADLVVCDGAPDVTGLHDIDEYIQGQLLLAALNITTHILKPNGTFVAKIFRGKDVDLLYCQLKIFFPEVTIAKPSSSRNSSIESFVVCKGYNPPDGYKPNMSNPLLECTQDPAFDKLEGVNRVIVPFLACGDLSAYDSDKTYDVNTHDGKQYVPLPPVQGPINPPYQTACFLKKNSLLATQKSSEDQDHRDDPTLPQDLHNKNKDDNKPDKSEDDAEASKSNIATALDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDI1</accession>
    <name>A0A6S7IDI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009305">
        <property type="protein sequence ID" value="CAB4016904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDI1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="8937" checksum="A8770B2CA88B40FE" modified="2020-12-02" version="1" fragment="single">ISQLREDVEKKQVNNQIENYSNPIHELLHNHNTNEIINEANETNISEVSNSNGKNETSTNKIDDADASNSPHLNDANGQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJL5</accession>
    <name>A0A6S7IJL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">AP-3 complex subunit delta-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A018871</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the adaptor complexes large subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009748">
        <property type="protein sequence ID" value="CAB4017876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJL5"/>
    <dbReference type="OrthoDB" id="10264595at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030123">
        <property type="term" value="C:AP-3 adaptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006896">
        <property type="term" value="P:Golgi to vacuole transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:001926">
        <property type="entry name" value="Uncharacterized protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017105">
        <property type="entry name" value="AP3_complex_dsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002553">
        <property type="entry name" value="Clathrin/coatomer_adapt-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22781:SF12">
        <property type="entry name" value="AP-3 COMPLEX SUBUNIT DELTA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22781">
        <property type="entry name" value="DELTA ADAPTIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01602">
        <property type="entry name" value="Adaptin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4017876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="30399" checksum="011788064AEE9FC9" modified="2020-12-02" version="1" fragment="single">MGETIVFRLSMVFERNLTDLVRGLRNHKENEAKFITSCLDDIKQELKQENVSVKANAVTKLVYIQMLGYDISWAAFNIIEVMSSSKFTFKRIGYLTASQCFHEELDILMLTTNMVRKDLASTNLYDSAVALSGLSCFLTPDLARDLANDVTNLLVSTRPYIRKRGILLLFKIFLKFPEALRPSFPRLKDKLEDGEPGVQSAAVNVICELARKNPKNYLSLAPVFFKLMNSSTNNWTLIKIIKLFGALCPLEPRLGKKMIEPLTNLIHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IME1</accession>
    <name>A0A6S7IME1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078047</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010198">
        <property type="protein sequence ID" value="CAB4018856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IME1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="21494" checksum="0D0AE9F6D0C3E294" modified="2020-12-02" version="1">MTDNKFLRARLKYERNSLEKNYNGEKFPWNWRNGMALFELNIKTSRNNVYRLRILVGENYPKQLPDLVVCASPKPMPKSLEWQGTHTTHTWPQKHGLLQICFYRQVCWEKQNIRLCQVFEKGEQWLEAYEEHLATGKPMDELLPPMEPTEEEFQEEERRRAEYERRMAEFDQKILGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IP71</accession>
    <name>A0A6S7IP71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044236</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005838">
        <property type="protein sequence ID" value="CAB4007571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IP71"/>
    <dbReference type="OrthoDB" id="6622340at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13358" checksum="D484DA215D1C45B0" modified="2020-12-02" version="1">MSLTIDKLYELHRSLSHPGMTCMTHFVKSRNLPFSVEDVKCMTQACKECQECKPEYHSPEPSHLIKATQPFERLNIDFKGPVPSDNRCRFLLTIIDEYSRFPFTFPCEDVSARTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQC4</accession>
    <name>A0A6S7IQC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Monocyte to macrophage differentiation factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A084348</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ADIPOR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005969">
        <property type="protein sequence ID" value="CAB4007951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQC4"/>
    <dbReference type="OrthoDB" id="186812at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004254">
        <property type="entry name" value="AdipoR/HlyIII-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20855">
        <property type="entry name" value="ADIPOR/PROGESTIN RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20855:SF3">
        <property type="entry name" value="LD03007P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03006">
        <property type="entry name" value="HlyIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR604254-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4007951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="26022" checksum="8BB805AE50C062F1" modified="2020-12-02" version="1">MVFAKTRLGRFMNRPAKKNEAYCPTHHEQVANCFTHAVFIFPAMAGVALLSHLSKTTLHNFVAWLYGIGLVCLFTISSMFHAVCLSNKFYTLRWFLHLGDRFIIYGFIAASYMPWLLLQDVGYVGEAVTWLLWSAAVLGTIYTFVFYEKYKVIEIILYLVIGICPSFSLFFARESKAVKELALGGAFYVLGVPLFKCDGRIPFAHALWHLFVVCGAACHFYAVLTYLYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JB46</accession>
    <name>A0A6S7JB46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016122">
        <property type="protein sequence ID" value="CAB4029356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JB46"/>
    <dbReference type="OrthoDB" id="5983529at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="457" mass="52835" checksum="C8A0CE0C374FBF9E" modified="2020-12-02" version="1">MYVALIEDKGCEHEETWIEELQRSFGDAMEKEVSYVESKAAAGKKAMDEERLQETTKKDQEKVEKMVQQMIIKRKTSEIVFQQLVEDVKPVLEMDCITAALKKAQEGLDAAVADCKEANDKYLELLDKDKGDAEFNWMKNIQKEYNAITSRIAVGIAKEQEKLKKLESTSKSKESCNLRLEKLKMPTFDGDIRQYPRFKKDFEQQVLPGLPKESALYALRSCLVREPLSIVRSVEDDIEEMLKRLDEKYGDPAKIADAVIESIKEVKVIKEGEHKRFINFVNIVEDAYQDLRRLGLEKEITTTSSVSIIEKKLPNDVRKEWAKLVSFDFPRSFKTKRKFWLHDGKVHGLIETSSEESDSEMVAGHEERVRSTRINMTDTRTDVRNGGDIRGDRMDWRLGRVSKFQPGNDRKVRNVEVQYKNRKSEEPLNKYGGQDYGTVERAVHRLVVILPAYHDDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JI63</accession>
    <name>A0A6S7JI63_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">52 kDa repressor of the inhibitor of the kinase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A010926</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016823">
        <property type="protein sequence ID" value="CAB4030381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JI63"/>
    <dbReference type="OrthoDB" id="5986682at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF14">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="2">
        <location>
            <begin position="123"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="684"/>
            <end position="737"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4030381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="768" mass="86489" checksum="F33386CC459D4002" modified="2020-12-02" version="1">MATFAIPRGEPLVPKEDCSPFDIGFVYSTISKASPAEKFRFINNVWKPSLNYSFPASVEAAGKLRKCRHEWLVRFTWLVYSRYLDGIFCLPCCCFGIQYGKNAARLQKLFRSPLTFWTTAVTRLQNHSSGKCETHSFSVVAMANFMDVMTRRTVAIDEQLNQITFRQIQPNREKMRSIIKTVVFCGQNAVALRGARDDNPDDETLQGNFHALLAFRVDSGDKTLQEHFENAPRNATYRSKTIQNEIINTVGSYITSKISAEIKESKLFSVLADEAADISNKEQLSLVLRFVDSSQQIREEFVGFYHCEDGTSGVALKEMILKAVADLGLPMANCRGQSYDGAGNMAGKYNGVSSLIQGQFSKALYVHCMNHCLNLCVADTCSEYLVKDMMSVVRSLSSFFSGSPKRQHHLKEKVKSLLPASKHEVLINVCETRWIARLDGLDRIVELLLPVVCTIEDIAHNRKGEDEESDSGDWNQNSKAAAKKMLPSITFQFVVTLVITCNCKAAKKRNGPLKAHSEISSLKKNLQDLRSNIDREHHKLYQEAVELAATIGLDPCKPRIIPVQAHRNNNPSDSIEGHYRVNLSVVFLDHALNQLETRFPPEAYTCYSGFSIVPTVMLANPSTWKNSVTLFCQHYSSDIPNVIGLPAELTLWQRRWKDKVEEVGIDKLPDRVSKTLISVDPVAFPNIFTVLKILATIPVTSCSCERSISSLRLLKNYLRNTTGQERLNGLTLMHAHKAISLDYEQIIDLFATLHPRRMRMVHILCSDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIA7</accession>
    <name>A0A6S7JIA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018165">
        <property type="protein sequence ID" value="CAB4032146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIA7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="22928" checksum="5E00AB8A92B095AE" modified="2020-12-02" version="1" fragment="single">MILNAIDKKQLIAIVLLDMSKAFDSIDTTTLITKLEDVGASCQAIQWFQSYLTSRYQVVRIQTTLSEPLEVKSGVPQGSILGPLLFSIYVNDLPSVPQQCSPYSYVDDTKLLMSFSLQHQQRAVSEINQDLLRIRNWCFDNKLLLNPEKTKAMICGSRQMRAKLPNFRLSLLGKEIIPVTSAKDLGVILDSGMTFDSHVQATISS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JL56</accession>
    <name>A0A6S7JL56_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">exodeoxyribonuclease III</fullName>
            <ecNumber evidence="4">3.1.11.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A063336</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.2" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020017752">
        <property type="protein sequence ID" value="CAB4031581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JL56"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003906">
        <property type="term" value="F:DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008311">
        <property type="term" value="F:double-stranded DNA 3'-5' DNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22748">
        <property type="entry name" value="AP ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22748:SF6">
        <property type="entry name" value="DNA-(APURINIC OR APYRIMIDINIC SITE) ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="8">
        <location>
            <begin position="3"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4031581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="466" mass="53279" checksum="A1F24F14A083A8FC" modified="2020-12-02" version="1" fragment="single">MRVDFACLQETHASSHESIRKWFGNTGYRVVSSSVSNKSCGTAILVRDTHKVNKVIRDEEGRFVQVHLEADEHLLSFVSLYALNKNAERNRFFSSIPELIDLSCPTFICGDFNSVLDSALDRKRRSTYTGSQTAQYQESGPALQSLLSATQTYPLWRTLHPGQTAYSWTHGSGQFASRIDMVWAPTVFQDNIKECEYHPSFFSDHSYLLVKFEFEQNFRGPGVWKFNRSLLDDPEYCDLVASFWSFWQSREGSDEYSSLLDWWDQGKYYLREVTRTFSKAKAEDGRSRKSSLTRQMHQLQRLFEAGDSSAFAQLCQVQEDLRQIALHEARGAQTRARCQWAEEGDSSSSYFFGLEAKHQARQKVSAIRDPVSGQVCHDPIDILGVWQRYYASLFTAQQCDPVAQDEMLAKVTRKLSQGERDACEGLLTEQECYSALSGMPHGKTPGSDGFPMEFYLRFWQSFGTDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPY1</accession>
    <name>A0A6S7JPY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Hemocytin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A013578</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017448">
        <property type="protein sequence ID" value="CAB4031220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPY1"/>
    <dbReference type="OrthoDB" id="10071893at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000173">
        <property type="entry name" value="Neurogenic locus notch protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050780">
        <property type="entry name" value="Mucin_vWF_Thrombospondin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030476">
        <property type="entry name" value="Pentaxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001759">
        <property type="entry name" value="PTX_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014853">
        <property type="entry name" value="VWF/SSPO/ZAN-like_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001846">
        <property type="entry name" value="VWF_type-D"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11339">
        <property type="entry name" value="EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11339:SF395">
        <property type="entry name" value="GH18 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08742">
        <property type="entry name" value="C8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00354">
        <property type="entry name" value="Pentaxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00094">
        <property type="entry name" value="VWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00895">
        <property type="entry name" value="PENTAXIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00832">
        <property type="entry name" value="C8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00216">
        <property type="entry name" value="VWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00289">
        <property type="entry name" value="PTX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51828">
        <property type="entry name" value="PTX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51233">
        <property type="entry name" value="VWFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Pentraxin (PTX)" evidence="10">
        <location>
            <begin position="1"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="VWFD" evidence="9">
        <location>
            <begin position="127"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="EGF-like" evidence="8">
        <location>
            <begin position="390"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="domain" description="EGF-like" evidence="8">
        <location>
            <begin position="427"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="535"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="538"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="415"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4031220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="554" mass="59980" checksum="FE07161D3E63DC1F" modified="2020-12-02" version="1" fragment="single">TGILVSNGQWNHVCITWKSSDAAVQVYKNGVLLESKTASIQGRPILPFGIWIIGQDQDSFGGGFQSTNAFHGSLTDVNVWDRDLDASEISSLANNDCGSGTKGNYRAYDDFVPYGGVRKYKSQCFERTCLARGDPHYSTFDGTRYDFMGTCEYVLAKDSLNNAFEVRQVNEPCGNGEPSCTKSLTVIFPNVTIQLLRGSVMVNDTEIVLPATYGGVAITEPSNRVTLIESYYGVEVEWNNVRNVRVTVLGRYLNRTSGLCGTFNGNPGDDFLAANGTTVDNAVIFGNSWKTDPGCDDATDVQHPCVTHSDRNATAIANCSALLSSPFDNCASLINPVSEGYITDCEYDVCACGGDATVCLCQAIEAYVSDCNSTGVDIDWLSDPRYQQCGSPCASDPCFNGGTCSNDGQSFCCSCPVGYNGDRCEIKGTPCASSPCFNGGSWRNINESAFECTCPFGFHYCIHAEQDRPNITSREVPVMQSPNVPVPSRTVVKCCCGKICKSARGLKMHQRSCQVIHGLNDELSADLEVQITTDNTVDTSENDNSINDIDDVFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0F6</accession>
    <name>A0A6S7K0F6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023818</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011745">
        <property type="protein sequence ID" value="CAB4021982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0F6"/>
    <dbReference type="OrthoDB" id="10555070at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7269" checksum="760F0114F52FC075" modified="2020-12-02" version="1" fragment="single">MAFPSWSAAVKKILLVQPSSASAERVFSLLHNAFNRQPDAALEETVKISVMLRYNKLARWLKHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7S8</accession>
    <name>A0A6S7K7S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041521</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025388">
        <property type="protein sequence ID" value="CAB4039441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7S8"/>
    <dbReference type="OrthoDB" id="5982330at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14243" checksum="5581084566EF2314" modified="2020-12-02" version="1">MVGKYGAGETSLFKCPTCDYEQEIRSSGVHISEGGSVSVFSEDEFCCPNCVSKSDKQATKICRDDKYNSGNDDDSSTCEKKVTDAVTNKEKTSNKKISSEKMSCKKRRLNQEKELKMPMNKKKEKQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAP8</accession>
    <name>A0A6S7KAP8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Arachidonate 5-lipoxygenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026876">
        <property type="protein sequence ID" value="CAB4040501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAP8"/>
    <dbReference type="OrthoDB" id="407298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00087">
        <property type="entry name" value="LIPOXYGENASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="421" mass="48352" checksum="072FB04D7B7A25D8" modified="2020-12-02" version="1">MQRASGEKTATFSKMIAVGRVFIIDYKLLHNLSNVEDYTERNTTDRRKMEKSRSPFCTFVVTNVRGAKELKPVAIQTDLIQGAPVFSPVDGLKWLKAKQEIQRADLFYVELVEHLLKTHLLMEPICVIMRRTLSVYHPLHQILRWHCRGLFVVNSIGMKALLGVGEFLDKLFAFGHTGSLELLKRAYPDLSWADTEFNENLKRRGVHKAEDLPYFPYRDDGLLIWKNVGDFARDYVKLYYLNDKDVKNNYELKYFANQLSADGTGKKGGIGMLKGFPAKIQTRSQLIDVLKRIVFIPVQHHSVNYPVVYYAGFVPNLPSKLYEDPRVPPQEFGFNSLPQVHVAAEQLALSMSLGSIRYDVFLDYGKHLKDDRAKAVVNKYHNHLIGSINDEITARNKRRFASGKLSYPYLLPKWMPNSIHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC46</accession>
    <name>A0A6S7KC46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070814</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013464">
        <property type="protein sequence ID" value="CAB4025182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC46"/>
    <dbReference type="OrthoDB" id="6622136at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="191"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="392" mass="44750" checksum="B2C67FB5EE75B496" modified="2020-12-02" version="1">MVKENPVNSIINDYKSLKEVYTIPKSILCSEYNVPADIEMQMFGDDQRGGSLATESNNKLPNSTNDNKDNDGNLNYETTPLSINGNSSIHEISIVETNKESSKENYKPWDQLIVSNYQRHDQNSLQQTNLISPQSFDQVEANCDSNAQQTEFTTYANDNLSNCLEQRQIPLITIADPVFCHAIKPNSISPTLSQSILSHSSQSPSEKKTYRERNPPEIEIHYERMEMSHPSPSQSPSGNGTYCERNRPEIETYHKRMEKIPTRYVRQTIGKATGSDNIPAWCLKRYAEELAPVVHDIVVASIVQCKYPTSYKHAIISPILKIRPPTDLDSDFRQVSVLPQLAKVIEKLQLQLYIQFQDQNKLASFHERSFHRVCPYLHIPELVRLNGQLLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCS5</accession>
    <name>A0A6S7KCS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028509">
        <property type="protein sequence ID" value="CAB4041558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCS5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="11369" checksum="50A81E1D6E734DD5" modified="2020-12-02" version="1" fragment="single">MLVKFAKSPPGTVDVEDLLFNATVKAYLEHYNQEFDKCLNGESGKTPQFWAPYRMMVDRQQKLHYAINKNDYNVHLLMWRKSLPLCFATNRVHYSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KE39</accession>
    <name>A0A6S7KE39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A009095</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031499">
        <property type="protein sequence ID" value="CAB4043097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KE39"/>
    <dbReference type="OrthoDB" id="5982216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632:SF26">
        <property type="entry name" value="BTB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4043097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="562" mass="62905" checksum="33DB64D8AD56FE5C" modified="2020-12-02" version="1">MASYDTGWEDELFQHPVGHTLHCGICLNVLKDPVSCRHNEHLFCQACITIHLMNFQTCPSCMEPLTVESLRQAPRTATNLLSELKIRCQFFNRGCRQFVELGDLERHVTDCGFAPAVCSNEGCQLEVNKQDLLHHETAVCELRKVKCHNCNEIKQEMDTVKVNLAAMNEKLKGVGDQLDRNKEQTHKNQENVKTEFGNVVTKVELVQEQLNKQEESNRQLQADNVEMKRSLNEIMKQLERMTQQTSHEVQTEEMKKDIAEGGMDREPKVLIAGGWSGRGNLNSVEMFSLLNATWTPLKPMKEGRNRASSVVHNNQIFVMGGAGNSGGIKSIEKLSLNAVQVDQSITWDSNVLAELPAPLNGQCSVVYNGRLIVIGGFDGSKCAYSDRITEISLVPPYTSKLLATMPQARYLHGVAMFGDKILILGGKHNHSSSTNLASVLLYDITKNKCKESAALPYPVSAMATVKWGDDSVIIAGGVDSNAQLLNKVLLYNMKTQKSLMLPDMKYKRRECVAAVVRDTVIVMGGHDETHLKSVECFRFDRYSWQELPEMQEERSWATAVVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEA4</accession>
    <name>A0A6S7KEA4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Neurogenic locus Notch -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A031450</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Apical cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010165">
        <property type="protein sequence ID" value="CAB4018788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEA4"/>
    <dbReference type="OrthoDB" id="5947210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016324">
        <property type="term" value="C:apical plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005112">
        <property type="term" value="F:Notch binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048468">
        <property type="term" value="P:cell development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048592">
        <property type="term" value="P:eye morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051093">
        <property type="term" value="P:negative regulation of developmental process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051241">
        <property type="term" value="P:negative regulation of multicellular organismal process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007219">
        <property type="term" value="P:Notch signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009967">
        <property type="term" value="P:positive regulation of signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003002">
        <property type="term" value="P:regionalization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060255">
        <property type="term" value="P:regulation of macromolecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008593">
        <property type="term" value="P:regulation of Notch signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080090">
        <property type="term" value="P:regulation of primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000565">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000472">
        <property type="entry name" value="Uncharacterized protein, isoform A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013032">
        <property type="entry name" value="EGF-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12916">
        <property type="entry name" value="CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12916:SF9">
        <property type="entry name" value="NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12661">
        <property type="entry name" value="hEGF"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00010">
        <property type="entry name" value="EGFBLOOD"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="9" id="KW-0221">Differentiation</keyword>
    <keyword evidence="12 14" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4 14" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="13" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="52"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="68"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="89"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="105"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="126"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="142"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="163"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="179"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="200"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="216"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="14">
        <location>
            <begin position="237"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4018788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="591" mass="66353" checksum="B2177B3FAFB00CC9" modified="2020-12-02" version="1">MVSSTNEICKSSRRHSKRRVFLKETENNICEQELPCKHGECIPDGDSYLCSCDSDYEGNNCETLIDDCVGRPCVNGECIDGVNSYQCRCKSGYEGTNCEENIDDCLGGACVNGDCIDGVNSYECRCKPGYEGKNCEKNIDDCLSSACVNGDCIDGVNSYECRCKPGYEGKNCEKNIDDCVGRPCVNGECIDGVNSYQCRCKPGYEGTNCGENIDDCVGNKCVHGKCVDKVNSYQCQCDFGYEGDRCDQVIMKPSTCSDANWWKSFDAKGWSNCDRDNLFITGFNRSPPKKNNKDPIYLLEEAKCCSAIPLLSSKGGECLAANWWSTLDKKNEWSLCPSGYFLNGLYRNSGDKLHKIEEGRCCKPKTHPNWYGQCYDENVGIAFDKQGWSKCSKTGHYITGVHRDSGTDWLHNIDKFRCCQMFPSVSCVTADWILSFDKQGWSKCTGENTFITGFYRSEKKGNDEIYRLEKARCCIASPQYQGESGVCVDENWWGILDNKRTWAKCRPGYFLHGLKRTSGNNVHNIEEGRCCRPKNHPAKHGHCYDQDIKSVFSSEGWGACTKAGYYVTGIYRHNGNRLHDIQKLRCCKMAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KK08</accession>
    <name>A0A6S7KK08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107352934</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011127">
        <property type="protein sequence ID" value="CAB4020788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KK08"/>
    <dbReference type="OrthoDB" id="5975479at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="127"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="360" mass="41529" checksum="293AD7CE49D0BCB2" modified="2020-12-02" version="1">MPDVLRSFQDIEFLRNRLGALRQEFEGRSNNMQDDNCEEEYNLRSRLENTNEGRGRRRVEIAQSQLEALHNAGGFRWNDAARMLQVSSRTLGRRRHELGMRVEGREFSDISDIQLDNVVREVLQSTPHIDGNHKLIQPYRIVIKGGIDGYSRLVAFLQASTNNAAATVLNLFHSAVERYNLPSRVRSDLGLENIEVGRYMLEQRGINRGSIITGTSVHNQRIEQLWRDVNRVIVSLFLNIFLYLVGNNMLDPSNKMHLFVLQFVYLDLINSALDQFRSQWNNHPVSTECKFSSQQLWIRGIDEDGPVPEQQQNYQVLVPQYSINITDEQLHHIRREIQAVSDNNGITQYITALNIVSSIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KK85</accession>
    <name>A0A6S7KK85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001937</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035249">
        <property type="protein sequence ID" value="CAB4044518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KK85"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="29129" checksum="5EB6B98986ED27AC" modified="2020-12-02" version="1" fragment="single">YTIFLKNICIFYFRNFKISKFYARASTAVRPEIHFRSAKTLRCLNPIARETSEIDSKACGGRVRVKTALEYKEYFTQIEFKRYSRFSGYEIQNIWQSGGAEVEREVSTVVEYKENSTDTGSAESVAKLHIRGTARSFDEVVDSALKTYRVRQDEEKEGVRPMHRPKSWNKNEREEAKDMEEGELGSELQRRYQREIKRQGFKIKVVEKSGATLKHMLQKLDPCRSPTCNRINCRTEGKGKCDREGVTYET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLX0</accession>
    <name>A0A6S7KLX0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glutamate receptor ionotropic, kainate 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A053714</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038109">
        <property type="protein sequence ID" value="CAB4045198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLX0"/>
    <dbReference type="OrthoDB" id="5984008at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001828">
        <property type="entry name" value="ANF_lig-bd_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01094">
        <property type="entry name" value="ANF_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4045198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="13515" checksum="005A3307676FE05B" modified="2020-12-02" version="1" fragment="single">MAIAEINADSAILNGTTLEGISNTTAPLDVKRSVDSACYQIKQGVVAVIGPARSNVVKAVNYICSGLNLPQIAFAASDHSLFLSYQQYPSLLRLSSSGDSQSDAIMAVMEYFKWNKAVMITSSDDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQ25</accession>
    <name>A0A6S7KQ25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012563</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034615">
        <property type="protein sequence ID" value="CAB4044340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQ25"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="26653" checksum="207752569CC84CF3" modified="2020-12-02" version="1" fragment="single">MDTSIRLGESSDLQSALDSVQSWAVENKMELNSKKTKDMWINFTEAPPPLPLRIGDAIIERVDNFKLLGTWFQKDLKWNKHVEETTRKAAKNLYCLRECRRANLPVEVRLTTYLTKIRPILEYCSPVWGGLPRYLKDELERVQRRSLRIIGLPHGYLPTLEERRIEATSRELNNILGDPSHIFYQRTMEHNKHNYNLRRRDGVFKYAPFSGTGRHRNSFVPRAMRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KSK5</accession>
    <name>A0A6S7KSK5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004664</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035415">
        <property type="protein sequence ID" value="CAB4044561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KSK5"/>
    <dbReference type="OrthoDB" id="529273at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="9322" checksum="AFB2E1BD9FCCE5EA" modified="2020-12-02" version="1" fragment="single">YNCGDENCYKDLARLRGLNYYTWENEEKLVERTENKHDKYGDNLKFRNFAFDVKEFMRIVSNMVEQVKKNIREYKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KZK5</accession>
    <name>A0A6S7KZK5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017877">
        <property type="protein sequence ID" value="CAB4031762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KZK5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12089" checksum="B5BE2DC2550ED40C" modified="2020-12-02" version="1">MSKINDKTDQIEGSHVAKDQEKSIPFVEIISTKCDKIAKAVDQLEDYSYQYNLKIVGIPQEQATETEEQTVNLCLNLFKTIGADDVISTDRPNAIICKFVRPLAREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LNZ0</accession>
    <name>A0A6S7LNZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059437</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021682">
        <property type="protein sequence ID" value="CAB4036079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LNZ0"/>
    <dbReference type="OrthoDB" id="5980437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16056" checksum="3199C51E8DD76B86" modified="2020-12-02" version="1">MASTGYGPSRESRWSRLTFDGNESNYELWEAKFLAHMRLLKLKDTILPSEEEADATKNEECYAELIQCLDDTSLSLVMRDATDDGRKALQILRDHYANQGKPRIITLYTELTSLEKALHETVTDYLIRAEKAITALKSPSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQP3</accession>
    <name>A0A6S7LQP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012850</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024132">
        <property type="protein sequence ID" value="CAB4038369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQP3"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13402" checksum="6C367DD1DFB3142A" modified="2020-12-02" version="1" fragment="single">MVNDIKPVNPINELCKFADDITIEAPGYDEDDTGAEEVENMKLWSDENRMVLNMNKTYKMIVRGRTSIPLPSCIPSIKRKTWLTILGITLEEIPGNWDIHFEEMLKKASGRMYILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5R1</accession>
    <name>A0A7D9D5R1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057676</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000058">
        <property type="protein sequence ID" value="CAB3977630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5R1"/>
    <dbReference type="OrthoDB" id="8196283at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11600" checksum="8DFBD1E36856F67A" modified="2020-12-02" version="1">MKAMQLCIYQCTVCREAWPLKTRAKELSKYVCARCSCDKNSPKKFSIENSMTPSPVPKQLQGLTQFEEMLIARAFSVMHVYTKPRGGQKAYKGHVITLPQDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D7K6</accession>
    <name>A0A7D9D7K6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Transcriptional-regulating factor 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A041225</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000162">
        <property type="protein sequence ID" value="CAB3979038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D7K6"/>
    <dbReference type="OrthoDB" id="5977959at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000012">
        <property type="entry name" value="Metastasis-associated 1 family, member 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000949">
        <property type="entry name" value="ELM2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017884">
        <property type="entry name" value="SANT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051066">
        <property type="entry name" value="Trans_reg/Corepressor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16089">
        <property type="entry name" value="REST COREPRESSOR COREST PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16089:SF40">
        <property type="entry name" value="SUPPRESSOR OF ACTIVATED EGL-4 PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01448">
        <property type="entry name" value="ELM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01189">
        <property type="entry name" value="ELM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00717">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51156">
        <property type="entry name" value="ELM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51293">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="29"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="193"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="377"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="47"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="102"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="196"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="220"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="251"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3979038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="697" mass="78875" checksum="43ECB778E7D71FE9" modified="2020-12-02" version="1">MMTHRDKKPYECKYCDKSYCDHRSLKRHYENYHPNPERPVTTTTATHKTDTEILRTAKSEGRFTPDRDEGRPSPLSSKQEVPQAGFGRKRNSDSMCSNSSDDLGRRPDSHSPHVSFDKPQTAVSMLKHVIDSHEHKKDKHSLEGYPRPGYYPYPEGLHPQWFSPFHQAQMMKLMQFNQPPILVQHGPIMNSTYCPTDPPQLVPNYPPMNQHPSNEGGQEEGGRRKGDDNGYKRNKDYVVPTDPTSIAIANAKDEQSSERPRQAQFKDGGTGGFPPVVKWKTITVEDNGMPPHSMGNNPGTMQLPPSMMVSDHNIKRERPVELNIHIPSSKVEKRPHEMVTTTEHQAKRHCPPPPSPASLHMAQEGLLKLADVSIKSEQPGNRDNVVFKNPPSTPPRKPRPRPEPINLSCSNLQFGGSLSPPIYTPPPMLSPLSIFHTSRLGGSTPITPGRFFLSGNRSRKNSIDDESMEGPTEVIIPEPKINIGSGFQAEVPSTTELRQTAVYDKHRAAVCWIPFEHETRKRAQEIEAFLDMACSVAVFGGGSNKEYALHVLYRLKGNIKLAVKHILANKSAIQKEDGLADYHYEGSERWTSKERLKFRESLDKHGKNFYEISKEIKTKNVQQCVEFYYLWKACRPEGMRSRRGYAQETESEQGHEDDCSDNDSETTFIFLCDFPECNSKFISRQALNGHIRVHGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8G7</accession>
    <name>A0A7D9D8G7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">DNA-directed RNA polymerase</fullName>
            <ecNumber evidence="10">2.7.7.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A015709</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9 10">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the phage and mitochondrial RNA polymerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020000162">
        <property type="protein sequence ID" value="CAB3979042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8G7"/>
    <dbReference type="OrthoDB" id="276422at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034245">
        <property type="term" value="C:mitochondrial DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001018">
        <property type="term" value="F:mitochondrial promoter sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006390">
        <property type="term" value="P:mitochondrial transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.150.20:FF:000041">
        <property type="entry name" value="DNA-directed RNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.280:FF:000001">
        <property type="entry name" value="DNA-directed RNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1320.10">
        <property type="entry name" value="DNA-directed RNA polymerase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024075">
        <property type="entry name" value="DNA-dir_RNA_pol_helix_hairp_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046950">
        <property type="entry name" value="DNA-dir_Rpol_C_phage-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002092">
        <property type="entry name" value="DNA-dir_Rpol_phage-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037159">
        <property type="entry name" value="RNA_POL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029262">
        <property type="entry name" value="RPOL_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10102">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10102:SF0">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00940">
        <property type="entry name" value="RNA_pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14700">
        <property type="entry name" value="RPOL_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01311">
        <property type="entry name" value="RPOL_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00900">
        <property type="entry name" value="RNA_POL_PHAGE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00489">
        <property type="entry name" value="RNA_POL_PHAGE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10 12" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="7" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="5 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0809">Transit peptide</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="70"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="11">
        <location>
            <begin position="70"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3979042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1157" mass="130926" checksum="2BEDD3F55EBA40D7" modified="2020-12-02" version="1">MAQIVTVRSANPVKIYFSCSKHYLFYLNQCKGTTQCTKLANYVSLSAVQWSIPNRTKFLSQTNIAANVHHRRSKTHLHASKTRNHSNDEASVSKSLAVLEHLNGSEDLELFSENGTGETKVLTEVKKDGRSQRRNDSFVDEAARLAEIDAYLFCGNVDGAIQVFNRCRRKGHKFHVLTFNTILHGLAAKKRVIDFQVFYHNMGGDNVMANVQTYAAVLELYGQLKDVKMIQDTCVKMNSQGYDLKHIFQKSILTKEQTTRVLEAIRLVYPNYKVEICKDPQPTSISPLVQSLYKEDKTNIKYSTNTPKSFVQDVMKSFEEQLEQERAAFGTIKSVERKRGEPRSSEGVCKSFPEIQSGWKDRLTGSIQREIELVMAGNKANKRSKTGPFTRLLVPCHEYADLAVEAITGPVCSQSYGAPLNHLCWLVGTQVYNRYAVKHKEKSGVVDKIRSMYGQFAELAYDHEACKTINPRELWFQLERSMPYEGSIYCDVPPWPTSVRVLVGCTLIDMMIRECKIDGNMFNHKGEKIAPAFFHTYEHEHTTASGYIKAHPAVVQLYQEYVSNCGDISLPASKLPMLVPPRPWTSITNGGHLLLSVQLTRGHDKTAENLSALEEACKASKLNAIFDSLNCLGLCGWKVNGKILDIMIDIFNDKGSELLEIPGPELPKLPEFTPELIDHPKLYTAFLKEKSNAKKEIHEAHALRMAMVYHLSVANHFREKTFWMPCNLDFRGRAYPIPPYGSHVGDDSTRGVLRFARGKPLGPEGLDWLKVHLVNLHGQLKKASLQERVEFADEHLDEIHDSADNPLTGKLWWQTADEKWQMLATCMEISNAIRSGDPENFISHLPVHQDGSCNGLQHYAALGRDKYGGRQVNVLPSDRPEDVYSEVAKLVEKMCERDAANGEEIAQHLVGKVSRKVVKQTVMTLVYGVTFIGGRKQISGQLDSLGLSPSVVWEGSSYLTRNVFASIREMFHAAKDIQDWFTSAAAQIALSGHFVEWVTPLNLPVTQSYQRMIKREVSTPLQLVKIRVPAREMVPNVVKQKGGFPPNFIHSLDSCHMMLTALYCQKHGLTFTSVHDSFWTHACDVDTMNKICREQFVSLHSQPILEDLRNHFLKKFENKRMRQPLRNSKRVDVHFGPLPERGSLDLNEVLKSTYFFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIA2</accession>
    <name>A0A7D9EIA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043903</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007030">
        <property type="protein sequence ID" value="CAB4011108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EIA2"/>
    <dbReference type="OrthoDB" id="10064229at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="26135" checksum="C04A81D8A721776D" modified="2020-12-02" version="1">MSPQLLMKGEQSHPLSNFQLAGWKLSANPMKQQTFQKRLETFCWRPGDKTPVSWCDQRKINPLSTSIESILEFLTGQYKEGKAYRSINVYRSALSAVLPLIDSWKVGSHPLVSQLLRGIFNLRLPQPKYSHTWKVSQLLGYIKSFGPNENLSLKNLSFKLVTLLGLTAPDRSSDLAKRDLRWRIFHPEGVSFSLSGLSKTSKPGDSPKTSFHATFKEDKDLCPVECLKFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJ52</accession>
    <name>A0A7D9EJ52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079562</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006126">
        <property type="protein sequence ID" value="CAB4008445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJ52"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="26924" checksum="05BD81B058EB295B" modified="2020-12-02" version="1">MILNAIDKKQLTAIVLLDMSKAFDSIDTTTLITKLEDVGASFQAIQWFQSYLTSRYQVVRIQTTLSEPLEVKSGVPQGSILGPLLFSIYVNDLPSDPQQCSLYSYVDDTKLLMSFSLQHQQRAVSEINQDLLRIRNWCFDNKLLLNPGKTKAMICGSRQMRAKFPIFRFSLLGKEIIPVTSAKDLGVILDSVYKNLDQLCKILLKSFLRDVKLKYNNNNNLSSRYVAENKFNLLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJ86</accession>
    <name>A0A7D9EJ86_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014669</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006736">
        <property type="protein sequence ID" value="CAB4010278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJ86"/>
    <dbReference type="OrthoDB" id="10581071at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22486" checksum="5C38B180F11FD1B4" modified="2020-12-02" version="1">MAKKLSKAPRIPVPRQAITIQPANSSSSDEHDAPPRRGLGNGVANCSRHTIECMVRALHDRRVDDGGRTQDRSDAVDQLQDDLNDMQYGLYAEPLAQCGCDECTACIQFDESYNAFYDQLKENDYNAPPPRFSDCSLHCVDNEMKALNLKSKFAGFGSSSLENAYHFAQSTAPMTPPNLSTAAPTGVMGSTTKYMVPYLRSRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HI14</accession>
    <name>A0A7D9HI14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045221</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000618">
        <property type="protein sequence ID" value="CAB3983473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HI14"/>
    <dbReference type="OrthoDB" id="2104158at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027912">
        <property type="entry name" value="CFAP54"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33487">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33487:SF1">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14858">
        <property type="entry name" value="CFAP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="521"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="735"/>
            <end position="765"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="525"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="743"/>
            <end position="754"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1167" mass="131001" checksum="F61C68C8343517E4" modified="2020-12-02" version="1" fragment="single">MLVKTCNCYTEQSKINPSVLAFEQELENILLKFAKRNSSGDGYQVKDDIGKRKLDFSKLFKEFKPRLQHQYFVEKLMQIGSFLYSIKAFQLAKFQCFTRYLQEVSSDFTCIESVAENNFQTFQESMMMIDDGGDVGDGGNDDGGNDDDGGDDGVMMIKVLYEDTMCSYELLTVWDPKLQNTDSVHRCLKLLKILMLTTQLALHQESFSWLVYNGTIHIYTISRQLMVTGRSSMILEYMLWACMCMEGSIPLLTLKYIPWRSTLYATVSLCYLDCKESQHAETFARRAMKKITELADIEEISTSVSTPETKAIFQAAKVKINVLIYQRVVFESRKRPKGLLRPKMRAPLREALHSNWPRNQTERLLADLFDGIAAQFLAILQTLGVPHRRTLQCKAPTGSIDDITLDIYPELFVAGVDLISGSNNGRLSHFDPEVHPSCIELSSASLLDLSEQGVDGIPLPFVVKFIKLAFSYEQWEVIEVILQPFMALLRTQAQVVQTPAYIMSLQLLAAMEPFFNTAGRKQKKGVTSNENTVNENSHGNKGNTSPADELLVVANILNGFSSELPKSSLPYVDVDMIIDATLFLWNRCKPYFQRVVSCNQESCRHVLNDKDCDKWLFILLTIDNVLHWSGLSDVDPVVAAEVALKLALVLECRASFIARANNAPALPKMPQVNEAVNFEQAKTEENAEAKTEEVQTESEPYKVVFPNTFLDLLYMAFNILESSVERVSEAREKMAKLSGGESVDNNKTSQNSPEAQEGRDKPQNCSKNDIDIQIIHLELLFNLTRVLAKLKSGRSDSEMTLGLDKTKSSSTMSRFQVESSKSQDTSWTADMVKRYNKLPLTRALLLMHITQIQDTASETAQQNLQECYDIIKKSQTQEKVLASRCKTHNSENAEAMAVPPPPILIFRSSSGLTLKPAPFKPLCQKKVYWYRLFGCSASGSNVKVRLNDSDLVGTGIEVPAGPNCRFYVTNLGEGERYVFAVAAYDKNGDLIGGGVGPTGQACPASHPMPMIMTWAYLTQAAYSCGVYDIARTSAQVLWNYFIPDENTSSDKHLSLPDGQLTLNVHRCDEKKLTESNQSLVRQFVQSVFISVDIAVQDGKLYCDSLCDYGALLPGQILRMRQCEKMLLVLQMSLWLNDNSMVLQCLTRCYGLIAPLLQLKIPSKPVLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIG0</accession>
    <name>A0A7D9HIG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Calpain-15 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A054534</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000501">
        <property type="protein sequence ID" value="CAB3982447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIG0"/>
    <dbReference type="OrthoDB" id="5961677at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004198">
        <property type="term" value="F:calcium-dependent cysteine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00044">
        <property type="entry name" value="CysPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.70.10:FF:000010">
        <property type="entry name" value="Calpain 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.10">
        <property type="entry name" value="Zinc finger, RanBP2-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.380">
        <property type="entry name" value="Zn-finger domain of Sec23/24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022684">
        <property type="entry name" value="Calpain_cysteine_protease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000169">
        <property type="entry name" value="Pept_cys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001300">
        <property type="entry name" value="Peptidase_C2_calpain_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036443">
        <property type="entry name" value="Znf_RanBP2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10183">
        <property type="entry name" value="CALPAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10183:SF382">
        <property type="entry name" value="CALPAIN-15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00648">
        <property type="entry name" value="Peptidase_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00641">
        <property type="entry name" value="Zn_ribbon_RanBP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00704">
        <property type="entry name" value="CALPAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00230">
        <property type="entry name" value="CysPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00547">
        <property type="entry name" value="ZnF_RBZ"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90209">
        <property type="entry name" value="Ran binding protein zinc finger-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50203">
        <property type="entry name" value="CALPAIN_CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00139">
        <property type="entry name" value="THIOL_PROTEASE_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01358">
        <property type="entry name" value="ZF_RANBP2_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50199">
        <property type="entry name" value="ZF_RANBP2_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0788">Thiol protease</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="6" id="KW-0863">Zinc-finger</keyword>
    <feature type="active site" evidence="10">
        <location>
            <position position="360"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="526"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="546"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR622684-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3982447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="877" mass="97546" checksum="0356F9F61CDE1164" modified="2020-12-02" version="1">MGITDSFPRTWQCVRCTYMNSFTTSSHCEICGADRDAKLWICCSCGASNPVHIVLCNSCGSEQNTFKTKKTDWPCPKCSFVNFSDSTKCLVCKSDKLSNNQPVKLKDPVAIEVDPSRLGESQNDVLKCHKCQTLLYDNTGTHCMVCGTPCMTEGFKPRPFPQSSLPKVKPEDHPSSSGVWKCVSCTLLNDPNQTICRACGSKKGDRDKPIEKLPRSDNTWVCPVCTLTNSSSIKFCNACNTSEGDVSWTRNAERLSVPNSPTHKTCETVGVEAKRIHDENRAKEQWKNIVEICSQHNMSFVDDSFPPDPSSLYFTPRSSTHPRVARWLRPQQITSQSQLPWEVFRNPSPSDIMQGVLGDCWLLSALAVLTERPSLLEKIIVTRKICDEGAYQIRLCKDGRWTIILVDDFIPCNEYGMPVYSQAARRQLWIPLIEKAMAKLHGCYEALVAGRAIEGLSTLTGAPCETIRLQVSSTNPSNEDVIDKGLVWAKLLSCRNAGYLMGASCGGNSEDADDHIYTRVGLQSRHAYSILDIRNVQGNKLLRLRNPWGRFSWKGNWSDMSPLWTAELREELMPHGADEGLFWISFEDMMQYFDCVDVCKIRDDWTEARIASFLPPFAGGPSEVVSMAVFSPTQLDLCVYQKTARNPSSPQSLVDLCIILFRSMPNTSRPELISIISNSKRTVKGSVSFSVIVEEGVYVAVVTSFSHWRSGGGKQTGTAYPSYVLAVHSSRAVMIEQLPMTEFLLADAITWMTIKNGKSHTGIPGITIYYLSHDMAGLLVVAENRRQDMHLLVNCDCAGSFNVVSTRGLLCTTDVIPPCHRQVVIILTQLEGNDGFSVSHKLNFRTMIDNGDGDYGAQHMPELGKDLIGLHSPRPIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIX8</accession>
    <name>A0A7D9HIX8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010517</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000543">
        <property type="protein sequence ID" value="CAB3982807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIX8"/>
    <dbReference type="OrthoDB" id="6011447at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="316"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="330"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="596" mass="67532" checksum="6975F3A96D8C05C0" modified="2020-12-02" version="1">MVKYVREKAGVLDFYVQNPIEWSHFMSKKEIDDIVKSEGLSHIDAPLVTSLGALKGRHIRLYSDAVKALYGEGPYRVSKELEDHQYTYDEWKDMSTERKENSVRHFLNAQPKKIYSPTTERSSAQKQDTAPLDVNIDILNDHHQLSDHSPDMSIVVDDSEEVTINSNVPRKVLSIAAEEADLPNECVRLGTLQQIFHKAEFLLNEPNAIKEAASDDSRFRTVKSQSGGTPLIVRPVNKKSNLFTCECSTFKGVGMCPDTVGVAETQDLLFEYLSDLRAKFTRQKGKKKNVGVNITAAIETGLKITEKGHKLNEVNKKVQRRSKKSGAEESFSSTCTTNPVLKNVTPTATTTGFEHETGTSPQPFLRMCTTNPTLKQATPAIPNVFPTPTEFGHQFEAAVHQSVGMVPGLPHPHQIFQEHQLEASYGHLQVEKTSVTTQQSRSIASNIQPDLNVYQPNPVNFRHPPSLQQPSQNFQREQPNWHAGMSPHPYTLCILAPIVMKCYGCGDDFIDKYRLPPCNIIVKHVDRRIRRRDEQTGQFLYSPDFSNTYYHPSCSHIRRKNPFFLGIVNIDRYTCERLTEEQRQYVATFDFKIQIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMP7</accession>
    <name>A0A7D9HMP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Galanin receptor type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A084292</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001211">
        <property type="protein sequence ID" value="CAB3987656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HMP7"/>
    <dbReference type="OrthoDB" id="5951670at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695:SF9">
        <property type="entry name" value="LEUCOKININ RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695">
        <property type="entry name" value="LEUCOKININ RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0807">Transducer</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3987656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="36039" checksum="F7E88F51611A31DF" modified="2020-12-02" version="1">MGKTAYDVYRYSDIVVLVFGIIGNTLVVVSMLTQAMKSNYYFLVLQLAICDLGVLIIYLSDHINSHMLLEQFLDSSTKRYCFGLHISLFFQVAGLGMMLIISMLRYRAIVHPWKPTISRQKLKVVCALVYIVGFIAGYGTYVPVCFMNDAAVVYKKFYFGYFVFCFYFFPPIFMAVVYYKIGRAVIEQNKHMKSICSSPVRRSAPNSSFNTLKFIRNRRTVLVCICTALCYGVGNIPFSVWFMCYVVAGEYHLLMKYVWVEYLASVLRVAGSHSVNPLIYGILDKKLFTFWKCCRKKNSKQKTRETLTDPVASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HR97</accession>
    <name>A0A7D9HR97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A033080</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001397">
        <property type="protein sequence ID" value="CAB3988864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HR97"/>
    <dbReference type="OrthoDB" id="10624431at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="270"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="299"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="415"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="478"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="128"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="177"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="218"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="234"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="301"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="422"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="488"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3988864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="538" mass="58840" checksum="E3C246DF1CDD9ED2" modified="2020-12-02" version="1" fragment="single">CTVKFDGKYVGAQIKFLDLSSKGKTKIYWFTDFASDKVKSFNVISIAYHDGSAIKTKILKEKGKPKEKWSRNWEATIEWNKVSNEYYGKLFRVNISYEIERKIGNQKYIDKNDCFVFKSSGSITVTFPSLPSTTLPPSTTKKSTSTTRSPRSTSPTTTPPTTIPPTTTPPTTTSPTATPPTAIPPTTTPPTTTRPTATPPTAIPPTAIPPTTIPPTTINGISTPTHSMITTQIKESKETRKPTESNGKTDEPSELTPGARKEGGGGGNDAMTVSLAVVGCLLLLVAVVVVVLWTRRRSAKASKEKNRGAGDADGSVDNPLENIYAEADTSINYPQKDKNNHVYEYAKGNLESNYTSLDMSKVESKPTYESLVNVQSNMYEQIPVKGYTPGASGVSGQTPIAEPFYHVVDTPEGGQDPGQIYHDPDNCETRREIPGRTGDDNPERVYSTLEEEGAPENYGREVPGRTGVDNPERVYSTLEEEETAPENYGREVPGRTGDDDPDRVYSVLEDETAESDYLTILPEKSDYEQPINPPISDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUU1</accession>
    <name>A0A7D9HUU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040106</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001655">
        <property type="protein sequence ID" value="CAB3990425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUU1"/>
    <dbReference type="OrthoDB" id="9068259at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17234" checksum="81702AB8EEEBD3D8" modified="2020-12-02" version="1">MEEGESSSRSVVSSEIGGFSFVTPEEKRAKRKKYLADRDATKIYLIEEQLFQRWRQLRDEAKIKTDKDFAAMLLEHYVNTHTKQILTSSDAETQTDHTEETAIFIDSPVLASTPLQISVEVESRASASVSKRRRLSLESHDPEGADETATGVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZH2</accession>
    <name>A0A7D9HZH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054789</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003051">
        <property type="protein sequence ID" value="CAB3997226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZH2"/>
    <dbReference type="OrthoDB" id="6287653at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16912" checksum="122D6FEF0EAC7708" modified="2020-12-02" version="1">MAQRKCRGRTFYAALGKALKTAKIEQRPWKQEMNQFLLQYRTSPHCSTGVPPAELLFNRTVKGQLPVLHQKSNVSRHKEARDNERKRQEYNEKYDRRVHRSRKDEIKVGDHVLVRQNRQNKLSPTFDPTPYVITKRQNSRVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I1J4</accession>
    <name>A0A7D9I1J4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Neurogenic locus notch homolog 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002438">
        <property type="protein sequence ID" value="CAB3994322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I1J4"/>
    <dbReference type="OrthoDB" id="5954286at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="141"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3994322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="36288" checksum="D6EFF3419CE0E438" modified="2020-12-02" version="1" fragment="single">GLSLAVAVFLLPFLERNFLTQALYEVRFDQAKEDYGLADNEVFLNLTQTPRVQCFYRCSMDCRCSAFQMFKDTDCQLLSSSRAEVTLQRMPGYTYYDIIPWKGSCPIDVTDCCEQKPCLHGGTCEPPTGADDPTIRFRCLCRKGYGGNRCQYRIGCPGYLDIVTSRANGIYTLVNPNTREPFQVYCRFDYAGPSVLFSTTLIQSYALQNVSQISPFTQGAPINENDVNFQAWRLSKANIEVLTMFALRWMVSCDFEKTGWSGPVDLLQAKLTQFDILEDANAVSKCVNVQRMTIRGETCQNCQIPVTQTASYPFHVNTDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I663</accession>
    <name>A0A7D9I663_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037191</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003267">
        <property type="protein sequence ID" value="CAB3998105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I663"/>
    <dbReference type="OrthoDB" id="6147315at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF47">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="195"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="202"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24247" checksum="84BF8A7CE9C9D6A3" modified="2020-12-02" version="1">MNEVRKLMGFLNYYRRYIANFSRIAKPIYDLVKVSENDSKTKRGKPMANNPVSWTPAHQSLLEELIGCLVSAPVMAYPDPHSPYVLHTDASENGLGVVLYQEQDDGLRVIAYGSRTLTPAEKNYHLHSVRYRPGKLNTDADTLSRLLEHMSKYMDSCTEETCQDELRAIVQSIQLEDKGKVTWVSSLIHDPTVLHGGDPQPIASSTPQFNLSDIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I682</accession>
    <name>A0A7D9I682_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020528</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004394">
        <property type="protein sequence ID" value="CAB4002595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I682"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14766" checksum="C857BDB98A838123" modified="2020-12-02" version="1">METLLFTCGNTVNYSYKNILQKEEVLKAQVMSLGDVLNKFFGESDERKRERDEDEVIKSLSLAACETKHKILLECYKTSWVGGCQTEMDSFWKCVNDHKAVLKEKARNYQKNIMQQNSEQNETAEEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I823</accession>
    <name>A0A7D9I823_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054159</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004770">
        <property type="protein sequence ID" value="CAB4003953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I823"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="424" mass="48516" checksum="FA39FF4145FBC8F6" modified="2020-12-02" version="1" fragment="single">NLIKRTERVQRRTTKYILDLPFFCERILELGNLYGRLSLRAETLEGLRYPGLRVRVIYPYPPWFTAGKRRRLEVATVFRGGPLEIPGGGGFGCTITGEVALLRDFVNQMILAENHNERARNNSRGTQPKKIHEFFESLVTNTQALETMGLKHRASECRSLATCLKVMYPVVVVIVDGVKSGLVKLLRKKPNKTDQKIESYNVKVSNVQGTFEMNIQLCSLDNLLWDISNKHSYKVKKINAKEYINWRHIEHLNPSLKRSKLDKKVQPEQGSLMDRGLSMVKIKVPVVDKTCFKDFWKLFSSLVDSGNEPANIKMARLRQSLKGTALEAIRGLGLSLPEYEEAKEILKTKFGGRRQQLQAYMDQLEAMPSLKGSDVQGFERFADLVRITVVKLQAEGRDGELGEGNIKRREPLKHSHYEQFRLQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IC83</accession>
    <name>A0A7D9IC83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059793</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004313">
        <property type="protein sequence ID" value="CAB4002289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IC83"/>
    <dbReference type="OrthoDB" id="5983224at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424">
        <property type="entry name" value="PROTEIN CBG23806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="845" mass="97265" checksum="4CC3403184809E6C" modified="2020-12-02" version="1">MSVFDFLKLDKFKHDIRVDTQHCNRYMAKEDTPEKKVVFTVHLPYKCLRTWHEARQQALAQNIACTYVEILNAILSEETGLKLREDNERIEGRLRRECGQIVRKSSEKRGSSHRKLFEKELKLAVQLDDLASMAELEKKLASEQLKNKDLEKRCEDLVKELFKAQDAERMASENFARAEEEIANLKNENQNLHDYLEGLGQNVGFSNSGKKITETGDRQQRRKLKELKRNVEKALWFAKTFGLDLQNVSFTDENGVSHTLSYNGNEKRGYKDLPEEERQKVRNILFILDKFCIGEAAYHELTMVSPDSDLPRSYLIKQCKEDLKSICHITRTPGSAQGAQIDFIKELQSVIQKKIQQNTIDIDDPSLTLKIKLSGDGAKMTRLTNFVVISFAVLDSEADMMSSKGNHTIAIIKGQESYDLLQQSCSSLLKQVNKLLEAKKLTVNGKDIPVDIYLGGDYKFLLLILGMKSATSDYACIWCKIFKLDRYDMSKPIDYYWQAKLARTFEEMREQAKSCKFSCEHRPLINIALENVVLDELHLMLRITDKLTDNLVRDAIEWDRKDNLNKPPNQRTAKHVDDLVGAINSCGVTFNIWEKMDADGRGSGISDFTSLMGSDKKLLLNKLPNKLGAVTRPEISETVVKIWKEFAELYVLLVTDNPSSGDITKYFQKATSWIRLFLTLSGKAMGYESGRVTPYMHAMVYHVPRFMEKCKGVRKFTGQGVEKLNDVCRRVHLHRSNKWDAAKDVLLVGKRMEHLADCERGVREYKKQNLDYWEEGIKESRAKRHRVCMQPAEVGHLDFEMLNNLTVDEIKLRLKNVGVKTRYRCKKKLKELLVNTLEDKENAIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IN81</accession>
    <name>A0A7D9IN81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphatidylinositol-specific phospholipase C domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006968">
        <property type="protein sequence ID" value="CAB4010942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IN81"/>
    <dbReference type="OrthoDB" id="6426110at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051057">
        <property type="entry name" value="PI-PLC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000909">
        <property type="entry name" value="PLipase_C_PInositol-sp_X_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13593">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13593:SF113">
        <property type="entry name" value="SI:DKEY-266F7.9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00388">
        <property type="entry name" value="PI-PLC-X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00148">
        <property type="entry name" value="PLCXc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50007">
        <property type="entry name" value="PIPLC_X_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="434" mass="48568" checksum="6386F96BE207F43B" modified="2020-12-02" version="1">MGMGGYLWLVNATSTTLKLTYQHSYQMNTWAFKNISAQSMERFYIEYNQTVVKSSDDAGEATFQLDGTSASFQLQVRYPYKSGECGLKVDWSGLKSAGRYAVFPPPPQGETIGELGWFHNGSLSLLIMEKAVKNTVSTVLPGSDSIVNENSTLPYPQTFLYEKWMDYYSDVLGKLTLTEMTLPGTHDAGTYNPKCGIGARWIRTQSLPLIQQLQFGIRVLDLRIGQISSGDYLIVHDIWRTSYTLAAALKEVTDFVDATDKEIVILDFHRFDKLGDKSYDYDKLKAQICSQLNGYILSVQNGQGKPLQEIWQTCGKKRVVVAWNTSNPDSYMWPGVNQRWYSHADSKTKLYNAIKKDMENPPTGLWASCSFMESSALHPPNKNASNTDPTITLWYFGGSAFCEKANIISADFFRKCSNVVQASIIGSLLKAGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPM9</accession>
    <name>A0A7D9IPM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">E3 ubiquitin- ligase RNF130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A074757</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008825">
        <property type="protein sequence ID" value="CAB4015740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPM9"/>
    <dbReference type="OrthoDB" id="5357315at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000009">
        <property type="entry name" value="E3 ubiquitin-protein ligase RNF130"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046450">
        <property type="entry name" value="PA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003137">
        <property type="entry name" value="PA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46539">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE ATL42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46539:SF23">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02225">
        <property type="entry name" value="PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52025">
        <property type="entry name" value="PA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4015740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="392" mass="43352" checksum="1FA4FBDD150FE7BC" modified="2020-12-02" version="1">MAVCGLQKILGEFSVVVLILGLLLGNVSALYNDNSEPDTHIASINVTVCKLDGSSCISHIREATYGSSSSHRKVEGYLVHASTKNGCQKFDFPVKKSPWIALIQRGSCYFTSKIQNAENHNASGVVIYSDKPGPDFKMEHQNNPDLVAVSISYDFGNKITSEIDNSSVYVKISFDRTIEGRKINTISVLFVSVSFIVLMVISLAWLVFYYVQRFRFLYARDKTERRLTTAAKKAIAKLNSRTVSKKDEEDGISNNSCAVCLEEYKSGETLRTLPCNHEFHKHCVDPWLIEHRTCPMCKTNILKELGMLQPEDERLSSQENDVTVSITPNDHNSALHNGGLAEELGGVPRGQVNQATSSERACIAVAPVETTTSCELSYVRTDKTRNTPGSAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWY8</accession>
    <name>A0A7D9IWY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075455</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011079">
        <property type="protein sequence ID" value="CAB4020692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWY8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14254" checksum="810DBD04B3A8C570" modified="2020-12-02" version="1">MLGPAELANRVKVKEKFPRICTVQTTCENYPVTTGHDYYRVKLTIPLLDHLIEQIEFQFPSEMCNLYNGFYVIPGIFLMCKNVDSKTEFINFVSPYKDDMPNYQSMHGNKASNKSHMIQLLIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZI2</accession>
    <name>A0A7D9IZI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018993</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009362">
        <property type="protein sequence ID" value="CAB4017020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZI2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13599" checksum="069123975138005F" modified="2020-12-02" version="1" fragment="single">MPSTKKAAATHLKNTKKTVKGSLREVSIDTAEEFNSINIVIIPGKKICPSCRKELSKKIQESNEENQQIADISDSETGNESDTETMSLGSHEEMLRHNLDASLEVMDLSPIKLHGVASHSKVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J5W3</accession>
    <name>A0A7D9J5W3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016455</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012012">
        <property type="protein sequence ID" value="CAB4022502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J5W3"/>
    <dbReference type="OrthoDB" id="6155691at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12352" checksum="0439E666CD588625" modified="2020-12-02" version="1">MAISVVFAQVPDGDLPDDGAQRELKICNDCEVVKLNESQMNSIRFTYTGETECPFKAQTIKKSEVFTMQVLMKDEKKYTDCVDVLDQLEEWTHQIYSAAGYCDLPESAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J736</accession>
    <name>A0A7D9J736_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012559">
        <property type="protein sequence ID" value="CAB4023562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J736"/>
    <dbReference type="OrthoDB" id="5982517at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="297"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="299"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="328"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="339"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="39117" checksum="940F1AC32B164741" modified="2020-12-02" version="1">MADGNAPVERRQREASSSPGPVGDTVSPLAEFMEEMREFKASMASEMASVRGEINNFTSTFDDSTFDDELRLDIDEGQGSDSETVSTCLDTKVERLLKETSKTKSSEDLTTSSDSLLTTIAQELDVSEQMGAAVQERLASIVEGLLSTKLSDEKWREKVGKYPRPQNLENLRTPRVNPLIWNQLSAGVRTNDAKQQRTQHALVGAIVAMTQAADHVLKSGNPDATLITSLTDGIAMATQCQHDINQARRIAMKQDMHTDFQALCNVPIPSGEFLFGDLSKHTKDIADANKLAKKVRPYQTATARSRQSSSGTYSRFSTGQYRRGHPYQRRENIFDRGRFHNAKKKRGGAAKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J7E8</accession>
    <name>A0A7D9J7E8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072947</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012480">
        <property type="protein sequence ID" value="CAB4023398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J7E8"/>
    <dbReference type="OrthoDB" id="5988089at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="447" mass="51253" checksum="5EAB6E0405D20CBD" modified="2020-12-02" version="1">MSGKFFFCVLFLWLVLNAVFAVPNKKNLYCAVCGKCCKQNLNTTRNSLPQGALLESCFGVSCEETGILCSTCRRALYIYRTTGKTSFQLDKSNKKDKAGRPKKKHRTVPARISSDNNNEGWVAEDTCFGVLQRGANGEVLMPAEMYDDIQMQFNSMSGRCDLKLELEKLKQRIYENFVLGNQPAIYQPNEFIEFCRQAGAPNIFEHILQAVSDDRHSHRRQDLNRVRTVSIIYTMCYCRSQMCNVMQVDNALYLNSNRMTQEGIDTQYRMGHTCSRKTSNIIRSQLSQNHEESLKSFFNQAIQNEWVLVLIIDDFTKIHTYRRPAILRTCNPMSMCTIVVKAFKQLRAIKVPSNISRIHCPDGVDIRACVDAITSPEQLALLSNSYASTMPNWLTTRFFTPDLERHILEEHGYGDESGVRMMRTMDDLHLIDFVELQLIKGWFSPSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JCL3</accession>
    <name>A0A7D9JCL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049990</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014418">
        <property type="protein sequence ID" value="CAB4026814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JCL3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11410" checksum="E813DBD28A1FFEC5" modified="2020-12-02" version="1" fragment="single">CETDYISAESTQASTSSEVLDVLSTPKSSNKVVCDLDEIYATLLFDEINSEVFEYDLMEDIVETNVDDIIHDDIEENITLKEILSNLAEATSYDQISIFTST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHF3</accession>
    <name>A0A7D9JHF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016173">
        <property type="protein sequence ID" value="CAB4029437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHF3"/>
    <dbReference type="OrthoDB" id="496981at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050275">
        <property type="entry name" value="PGM_Phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48100">
        <property type="entry name" value="BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48100:SF1">
        <property type="entry name" value="HISTIDINE PHOSPHATASE FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="23913" checksum="F41364D5D334228F" modified="2020-12-02" version="1">MATSTNQNKRVHFIRHAESVCNVLRRELKAYKLPNAVIPDPGLSYEGMQQTNRLKEYLGRTLKPEIAICSPYTRTIHTCLLSYGSNNVVVSPLCGERVSSCDDIGLQASYLQGLFPMLDFSSLDEIWWYVQDGIDSQQEAVSLIAQGKLEFETNGNVTTRMEKFYDFLLKRPEQNIAVFAHNDFLCEFLSKYFGFTDSHLDNCEVFSANI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JIA6</accession>
    <name>A0A7D9JIA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016796">
        <property type="protein sequence ID" value="CAB4030343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JIA6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="52" mass="6010" checksum="0C4AE061AB4A65E3" modified="2020-12-02" version="1" fragment="single">MRNYAKFCVRSQAICSKALVDSVFLNKMKSQKKLLQKKLVQISVLSHPEMLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMG1</accession>
    <name>A0A7D9JMG1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Alanine--glyoxylate aminotransferase 2, mitochondrial</fullName>
            <ecNumber evidence="28">2.6.1.18</ecNumber>
            <ecNumber evidence="12">2.6.1.40</ecNumber>
            <ecNumber evidence="5">2.6.1.44</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">(R)-3-amino-2-methylpropionate--pyruvate transaminase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="16">Beta-ALAAT II</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17">Beta-alanine-pyruvate aminotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="30">D-3-aminoisobutyrate-pyruvate aminotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">D-AIBAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="29">D-beta-aminoisobutyrate-pyruvate aminotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="40" type="ORF">PACLA_8A051103</name>
    </gene>
    <organism evidence="40 41">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="40" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="40">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="38">Multifunctional aminotransferase with a broad substrate specificity. Catalyzes the conversion of glyoxylate to glycine using alanine as the amino donor. Catalyzes metabolism of not L- but the D-isomer of D-beta-aminoisobutyric acid to generate 2-methyl-3-oxopropanoate and alanine. Catalyzes the transfer of the amino group from beta-alanine to pyruvate to yield L-alanine and 3-oxopropanoate. Can metabolize NG-monomethyl-L-arginine (NMMA), asymmetric NG,NG-dimethyl-L-arginine (ADMA) and symmetric NG,N'G-dimethyl-L-arginine (SDMA). ADMA is a potent inhibitor of nitric-oxide (NO) synthase, and this activity provides mechanism through which the kidney regulates blood pressure.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="19">
            <text>(2S)-2-aminobutanoate + glyoxylate = 2-oxobutanoate + glycine</text>
            <dbReference type="Rhea" id="RHEA:77339"/>
            <dbReference type="ChEBI" id="CHEBI:16763"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:74359"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="20">
            <text>(R)-3-amino-2-methylpropanoate + pyruvate = 2-methyl-3-oxopropanoate + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:18393"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:57700"/>
            <dbReference type="ChEBI" id="CHEBI:57731"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="2.6.1.40"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="20">
            <dbReference type="Rhea" id="RHEA:18394"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="22">
            <text>2-oxobutanoate + L-alanine = (2S)-2-aminobutanoate + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:77355"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:16763"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:74359"/>
            <dbReference type="EC" id="2.6.1.44"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="33">
            <text>2-oxohexanoate + N(omega),N(omega)-dimethyl-L-arginine = L-2-aminohexanoate + 5-(3,3-dimethylguanidino)-2-oxopentanoate</text>
            <dbReference type="Rhea" id="RHEA:77363"/>
            <dbReference type="ChEBI" id="CHEBI:35177"/>
            <dbReference type="ChEBI" id="CHEBI:58326"/>
            <dbReference type="ChEBI" id="CHEBI:58455"/>
            <dbReference type="ChEBI" id="CHEBI:197301"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="27">
            <text>2-oxopentanoate + N(omega),N(omega)-dimethyl-L-arginine = 5-(3,3-dimethylguanidino)-2-oxopentanoate + L-2-aminopentanoate</text>
            <dbReference type="Rhea" id="RHEA:77359"/>
            <dbReference type="ChEBI" id="CHEBI:28644"/>
            <dbReference type="ChEBI" id="CHEBI:58326"/>
            <dbReference type="ChEBI" id="CHEBI:58441"/>
            <dbReference type="ChEBI" id="CHEBI:197301"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="26">
            <text>3-oxopropanoate + L-alanine = beta-alanine + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:14077"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:33190"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="2.6.1.18"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="26">
            <dbReference type="Rhea" id="RHEA:14079"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="32">
            <text>L-ornithine + glyoxylate = 5-amino-2-oxopentanoate + glycine</text>
            <dbReference type="Rhea" id="RHEA:77331"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:58802"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="24">
            <text>L-ornithine + pyruvate = 5-amino-2-oxopentanoate + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:77327"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:58802"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="37">
            <text>N(omega),N('omega)-dimethyl-L-arginine + glyoxylate = 5-(3,3'-dimethylguanidino)-2-oxopentanoate + glycine</text>
            <dbReference type="Rhea" id="RHEA:77315"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:197308"/>
            <dbReference type="ChEBI" id="CHEBI:197310"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="25">
            <text>N(omega),N('omega)-dimethyl-L-arginine + pyruvate = 5-(3,3'-dimethylguanidino)-2-oxopentanoate + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:77307"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:197308"/>
            <dbReference type="ChEBI" id="CHEBI:197310"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="34">
            <text>N(omega),N(omega)-dimethyl-L-arginine + 2-oxobutanoate = 5-(3,3-dimethylguanidino)-2-oxopentanoate + (2S)-2-aminobutanoate</text>
            <dbReference type="Rhea" id="RHEA:77351"/>
            <dbReference type="ChEBI" id="CHEBI:16763"/>
            <dbReference type="ChEBI" id="CHEBI:58326"/>
            <dbReference type="ChEBI" id="CHEBI:74359"/>
            <dbReference type="ChEBI" id="CHEBI:197301"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="31">
            <text>N(omega),N(omega)-dimethyl-L-arginine + glyoxylate = 5-(3,3-dimethylguanidino)-2-oxopentanoate + glycine</text>
            <dbReference type="Rhea" id="RHEA:77311"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:58326"/>
            <dbReference type="ChEBI" id="CHEBI:197301"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="21">
            <text>N(omega),N(omega)-dimethyl-L-arginine + oxaloacetate = 5-(3,3-dimethylguanidino)-2-oxopentanoate + L-aspartate</text>
            <dbReference type="Rhea" id="RHEA:77343"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:58326"/>
            <dbReference type="ChEBI" id="CHEBI:197301"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>N(omega),N(omega)-dimethyl-L-arginine + pyruvate = 5-(3,3-dimethylguanidino)-2-oxopentanoate + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:77303"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:58326"/>
            <dbReference type="ChEBI" id="CHEBI:197301"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="35">
            <text>N(omega)-methyl-L-arginine + glyoxylate = 5-(3-methylguanidino)-2-oxopentanoate + glycine</text>
            <dbReference type="Rhea" id="RHEA:77323"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:114953"/>
            <dbReference type="ChEBI" id="CHEBI:197314"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="23">
            <text>N(omega)-methyl-L-arginine + pyruvate = 5-(3-methylguanidino)-2-oxopentanoate + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:77319"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:114953"/>
            <dbReference type="ChEBI" id="CHEBI:197314"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>glyoxylate + L-alanine = glycine + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:24248"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="2.6.1.44"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:24249"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="36">
            <text>oxaloacetate + L-alanine = L-aspartate + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:77347"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 39">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="40">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.18" evidence="28"/>
    <dbReference type="EC" id="2.6.1.40" evidence="12"/>
    <dbReference type="EC" id="2.6.1.44" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020018205">
        <property type="protein sequence ID" value="CAB4032191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMG1"/>
    <dbReference type="OrthoDB" id="10261433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047305">
        <property type="term" value="F:(R)-3-amino-2-methylpropionate-pyruvate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008453">
        <property type="term" value="F:alanine-glyoxylate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016223">
        <property type="term" value="F:beta-alanine:pyruvate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009436">
        <property type="term" value="P:glyoxylate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019481">
        <property type="term" value="P:L-alanine catabolic process, by transamination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000055">
        <property type="entry name" value="Alanine--glyoxylate aminotransferase 2, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049704">
        <property type="entry name" value="Aminotrans_3_PPA_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45688">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45688:SF3">
        <property type="entry name" value="ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 40" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="10" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="8 39" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="41" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0809">Transit peptide</keyword>
    <feature type="non-terminal residue" evidence="40">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="40">
        <location>
            <position position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00039130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00039862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00041662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00041845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00042611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00042669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00043669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00043679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00043726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00043749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="ARBA" id="ARBA00043751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="ARBA" id="ARBA00043758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="ARBA" id="ARBA00043777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="25">
        <source>
            <dbReference type="ARBA" id="ARBA00043798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="26">
        <source>
            <dbReference type="ARBA" id="ARBA00043825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="27">
        <source>
            <dbReference type="ARBA" id="ARBA00043826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="28">
        <source>
            <dbReference type="ARBA" id="ARBA00044055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="29">
        <source>
            <dbReference type="ARBA" id="ARBA00044257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="30">
        <source>
            <dbReference type="ARBA" id="ARBA00044258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="31">
        <source>
            <dbReference type="ARBA" id="ARBA00047892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="32">
        <source>
            <dbReference type="ARBA" id="ARBA00048264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="33">
        <source>
            <dbReference type="ARBA" id="ARBA00048500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="34">
        <source>
            <dbReference type="ARBA" id="ARBA00048560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="35">
        <source>
            <dbReference type="ARBA" id="ARBA00048760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="36">
        <source>
            <dbReference type="ARBA" id="ARBA00048916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="37">
        <source>
            <dbReference type="ARBA" id="ARBA00049480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="38">
        <source>
            <dbReference type="ARBA" id="ARBA00058068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="39">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="40">
        <source>
            <dbReference type="EMBL" id="CAB4032191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="41">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="457" mass="50289" checksum="C2F4BA3E10B3203E" modified="2020-12-02" version="1" fragment="single">VLLFYLLYLAKRLFATGSACQKLLEMPPCDHQPEPYTGKTPEETLKTRKEKLSPTYYLYHPASPPVIHEGKMQWLWDSNNKRYLDLFGGIVTVGVGHCHPKVNAAVKAQMDKLWHTTQIYMHPNVHEYAERLTEKFPGDLKVCFFVNSGSEANDLALFLARHYTKNFDFISLRNSYHGASPYIMGVTAVGTWKFNHPVGFGVHQTMNADVYRGLWGGSKCRDSIAQTTRTCNCVEGQCEATGNYIAQFEDMLKHSCGQKVAGFIAEYIQGVGGSVQLPKGFLPKAYELIRARGGLCISDEVQTGFGRLGSSFWSFEDAGVVPDIVTMAKSIGNGYPLAAVVTTPEIASVMGEAIHFNTFGGNALGSAVGMAVLDAIEEDGTQQNSHVVGTHFLSELLKLRDEFEIVGDVRGKGFMLGLELVTDKESKNPLPAPDIVEIWDDIKDMGVLIGRGGLYGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JN05</accession>
    <name>A0A7D9JN05_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017746</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019040">
        <property type="protein sequence ID" value="CAB4033201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5982049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="296"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1459" mass="162297" checksum="22405F2730D840C1" modified="2020-12-02" version="1" fragment="single">MNALDREFYAKHFLTENKGEIDVQWKEKCEEPMVKPEELTGIPDTEKSSLIRRRSISSDRDVANQYRSVSMEKFMVFVRSEASTVNLKVSGCEITVCIPASDHTRNVQLHRNVGSWSVDLSRNNPGFGKPYLLKLTNQEKNDEIKVSIVPERDFIKTSMLHCTFKSLTEFSLTGPNLRVVNSLYDNTLTGMSLQLNSVGNLRISSHPLQVKSLDISVRPPEGDPGNSNVYVDTGAAVKCQSLTACIEDGSNVFLNGTVTCTPSCNNLNVRVISGNLHVSVSGILGQKVFTDTVSDKDIKKTNKKKNQHTSSFNGYKTPPSTLEQNSKMDASYEQDAKTDSSGRQNTKAETNKLYLVIDEGNLTNFGRICAKEYLLLICDTLMLCKDSKHDTASRGFRSYTALQKESGFLSSISVQENPKQRSSSYDSRLLSTVQSLDSKRLISILNEEVDPTIKVDDRSIYTEFNNICGERNKATYDKDKVEKDLIRRCLNIWKWKHGVISCTSITCVVKQDINDCSQLQSKELALQVDGTARVARPWTWKCGELSGFVKGDFLFHDNAVLTKFNKFCVFGNFRIFRTSSVRVQEGGDLIIGEEFENNSVLISDKNLSLTLGYLKQARASSIISNEDLLVALYRKIEDVWFGNIYADHRLFLQVQERVVCDALCVAKAVHLEFFGERPQFVVTQVLLAEEGSLNMWAENEYESANFLLSGKLISNGIQAETASVCVLPGGVAELTCESNVNEVDVITRWLHISNQAVMISKSKENIRNHVSKIMKNYNFTTSVYCEESIFVDGALGAFGSDLSIYCEALRNNGVIKLSTINRSSSSLHIECDKELFNSGTIGSEGNMTIDAMIVSNETGVIKSSPSLRISTNFLGATSLCGQILVDKQLFIHSKSEEELLLNVIGGKSEGDRHFIPPYQLEVKCKNANLKIDSSIICPEQLSNENEGESSIMVLSLHNCLSLTRECVLEDVRIQFIQIEQEDNNAEEPSKFVLQDSFKVKSLYLSSGNALESEVVRKGKISFGGSNKSTVVDTLEVDGAVHEVIFGTENLFVCTEAVLDCERATIKTDLECVEVHANNLNVHGQMRCMGGSSDDKKSLVKVKHTFSTDGSVLCAGSVEMFIGESFEQTEDGNIAVEGDLLLKIVNENGHTSLEGLTKGQKESVMKVESDNIKVSGCVSKVHTLSLNAEIDMALYEKSRISCEEIDVTGKWITTAGTINGFNTLSIEPWAIMNTGIIESKNDSSSIFFQSDLTLINSGICRAQMTYLEAPFLLNLPGKVISDVNDVTCCELVGKEKLKLESIACFLGGSSLRSCKRYENLSVLLFKFLTYIACTPDSKNLEAWSKAAESLRNIQSQVVHDASKQDSTILKTLMNSKDLVTGTEVDLRISRMYDMVNDFVAEILKKGIMSFDHTKLVHILTIESERYTKINILKEKLLKIPERARAIRELMKKRAIKIKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPL4</accession>
    <name>A0A7D9JPL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031466</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019529">
        <property type="protein sequence ID" value="CAB4033764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPL4"/>
    <dbReference type="OrthoDB" id="10625023at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="62"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27882" checksum="4D35CC56BE027849" modified="2020-12-02" version="1">MDNSEGHTYSAPNKDRDYNHSPDTEIPPEKGIKPMDEQSVEMNNQSEQNLRNGEADFSGKNEGSNSESSSVDSEDDYLDETPTNEVLFQEGAFANTSERRLDDTQVEYIELTEFERRYPGCEASESNAFIADQSSKRRVEQAMENLKLVENFQENGQYDEALDCCDYALQLLDLSQDTNLRMKFCSNIMQLYFLKGNIDAVLNIYYENCVDVLEFVSDPKVIQSIMDMHTLCMKKLKTKDDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JVD2</accession>
    <name>A0A7D9JVD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A061199</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021727">
        <property type="protein sequence ID" value="CAB4036131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JVD2"/>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF31">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 6-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="155"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="560"/>
            <end position="939"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="158"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="438"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="455"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="475"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="560"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="595"/>
            <end position="770"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="778"/>
            <end position="939"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4036131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="985" mass="111060" checksum="383680A1694BCDB5" modified="2020-12-02" version="1">MYADDTNLTYSGSDTNTIQFHLNEDLENNEWLISNKLTLNMTKTEYMLIGSRQRLSTLSDNPSFEINGIPLDRVSTTKSLGVLLDENLTWSSHINKMTKRIASGIGAIKRLRSFVSLKTLHVIYQALIQPHFDYCNVVWGNCGKTLSNKLQKLQNRAMQDKVPKAEDKVPHPEDKVPQTEDKVPHSENKVPQAEDKVPHTEDKDPQAEDKDPQAEDKDKVPHAEDKVPHTEDKVPHTEDKVPHTEDKVPHTEDKVPHAEDKVLHAEDKVPHAEEKVLHNEDKVAHTEDQVPHTEDKIPHAEDKVPHAEDKVPQAEDKVPHTEDKVPHTEYKVPHSEDKVPDGEDKVKVPHTEDKVPHAEDKVPDGEVKVAHAEDQVPHAEDKVRPAEDKVPHSEDKVPHTVDKVPHAEDKIPHGEDKVGHTEDKVSYAEYKVPQAENKVTHADDKVPHTENNVPHAEDKVRHGEDKVSHAGGKVPHAENQVRHAEDKASHPEDKVPHSEDKVAAGEDKVAHAEDRVPHAGDKVRHAEDKVLTLSTSYLKLWTRFLTLTTRFLKVPQTEDKVPYPEDKVPHTEEEVTHTEDKLPHAEVKVPQAENKVPHTEDKVPHTEDKVLHTEDEVPHAEDKVPHVEDKVPHTEDKVPQDEDKVPHTGDKVPHDEDKVSHAEDKVPQAEDKVSHAEDKVPYGEDKVRHAEDKDPHAQGKVPCAEDKEPHTEDKVPHTEDKVPHTEDKVPHAEDKKIFIFSPNEDKVPHAEEKVPHAEDKVPLTENKVPHAEGNAADAGEKLPQAEKKVPHTEDKVPHTEDKVPHAEHKVHDGEDKVPHAEFKVPHAEDKVRHSEDKVPHAEDKVRHTEVKVPLTEEKVNSDDKVPQAEDKVPHTEDKVPQAEDKVPHTEDKVPHADDKVPQAEDKVPHTSDKVPHDEDKVSHAEDKIPQAEDKVSHAEDKVPHVYEEQDGEAASCLQSLSKQLKRMEALYRNVRLPESVRGKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K3Z3</accession>
    <name>A0A7D9K3Z3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Integrase core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A047235</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027100">
        <property type="protein sequence ID" value="CAB4040677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K3Z3"/>
    <dbReference type="OrthoDB" id="6149502at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4040677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12218" checksum="2958CA1808EEB0B6" modified="2020-12-02" version="1" fragment="single">MEEEDILDILNESHLMALHFVFIPLVNKKLNLWHAAWAHHRMRTTRSTPAQMWLTWQLNNPIGLDSTPIPVQDRDDDSDDDPDNGDEDQLQGDRPVFLPLLPGLPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K6N6</accession>
    <name>A0A7D9K6N6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029034</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029606">
        <property type="protein sequence ID" value="CAB4042174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K6N6"/>
    <dbReference type="OrthoDB" id="5987633at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="61" mass="7394" checksum="5E22913E3CA37F26" modified="2020-12-02" version="1" fragment="single">MPRFKIGDLSKERKRLKEKVVMENRSLDALHDELSKLTTEKEKKRKELCNMKSKHRRLDLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8C6</accession>
    <name>A0A7D9K8C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003365</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030991">
        <property type="protein sequence ID" value="CAB4042851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8C6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12334" checksum="5663BDF3ABE1394E" modified="2020-12-02" version="1" fragment="single">MTKNLDQQLTTLTSSLENKRQHKINILLKQQSKDNRQSKLVRPEGFKNLSATTIDANLSDILNKCPSFVNADPKHLPKTCLQARANLQMVADKLEDQEVLESTINEFKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KBT8</accession>
    <name>A0A7D9KBT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-I Gag-Pol poly, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032912</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032828">
        <property type="protein sequence ID" value="CAB4043652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KBT8"/>
    <dbReference type="OrthoDB" id="5971169at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="183"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="234"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28102" checksum="97FC3B9A24D42275" modified="2020-12-02" version="1">MSSKEFDVGGFRPFDVNSDPNSVGSEWERWLRSFQLYADGKGLIIEAVKDDNKVQRRAFLFHCAGSDVQDIFDVLPETGNAKEYEKAEEALTRHFVTQVNVPYERHMFREMAQNENETIDQFPIRLRRKTQQCDYGDQLESQIRDQIISRCRSSDLRRKFLEKGQTLNLQQLQEIARTSEAVKRQAKSMSVHNDGVNRVSERPGQQDRRESKGEKGGKVKKSGECFRCGKPGHFARDPRCPAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2K2</accession>
    <name>A0A7D9L2K2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067787</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012862">
        <property type="protein sequence ID" value="CAB4024141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2K2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="35"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15080" checksum="015D0F6BC8BE7336" modified="2020-12-02" version="1">MASGKGDSSQSRAKEILSQIFSRIGELSDALAGPDGSSNNSSSVGTSDTVESEVRKVFGQQHSSTTLSSSVGTNHTSISTTQGTTQASVSVSPSPQLFQEPNPSYNTRRYFGNQRSAMKSNRWRKGKDPKTKIKYWAVLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2U5</accession>
    <name>A0A7D9L2U5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A086849</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DEAD box helicase family. DEAH subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020012952">
        <property type="protein sequence ID" value="CAB4024305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2U5"/>
    <dbReference type="OrthoDB" id="5600252at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050684">
        <property type="term" value="P:regulation of mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18791">
        <property type="entry name" value="SF2_C_RHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000677">
        <property type="entry name" value="ATP-dependent RNA helicase A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.1080:FF:000074">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000284">
        <property type="entry name" value="probable ATP-dependent RNA helicase YTHDC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1080">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002464">
        <property type="entry name" value="DNA/RNA_helicase_DEAH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048333">
        <property type="entry name" value="HA2_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007502">
        <property type="entry name" value="Helicase-assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934:SF119">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21010">
        <property type="entry name" value="HA2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04408">
        <property type="entry name" value="WHD_HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00847">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00690">
        <property type="entry name" value="DEAH_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="15"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="92"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="975"/>
            <end position="1002"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="63"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="136"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="7">
        <location>
            <begin position="993"/>
            <end position="1002"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1036"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4024305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1036" mass="116292" checksum="1FF3774349FD5994" modified="2020-12-02" version="1" fragment="single">LQRLCISIKNVLRPRPQTQSGRMAPAQWTHPQAPADAQWTHPQAPADAQWTHPQAPADAQWTDARRPQDGRTRGRPWTQDTRVLGYVHTGTQSGRMAPAQWTHPQAPADAQWTHPQAPADAQWTHPQAPADAQWTDARRPQDGRTRGRPWTQDTRVLDAVFDKLFLGSTVKKTGAQQKIFRGPQHLGARENVDSCARDQTLNITWLPETLLETLQLDQVELYPWQFTLAVSCEYSTFPLSEQFRTDQTILFPNTPQPSGEEAANIVLKRDNDKFDEQVQNEDAGVVEWSPPSMDWNPWVNQPTVIEGAEEYQEPLPTSEDFRKELTDRMNNDPALQQMLQQRTQLPVAGYKNALVQAIRENQVVIVRGATGCGKTTQVPQFILDDWIQQGRGTECNIIVTQPRRISAMSVAERVASERAENIGCSTGYSVRFDSILPRSHAAIMFCTVGVFLRKLESGLRGISHVIIDEIHERDINTDFALVILRDMVARFPNLRVVLMSATIDTQMFHQYFNLCPIIEIEGRSFPVQEYYLEDVIEMLGFVPPLSDKKKKRDRDDTEVEEEENCNAICSDDYSFQTKNAMGQLSEKEMSFELIEALLNYTAGLDIPGAVLIFLPGWNLIFAIHKFLTQHPVFGGRSYRLLPLHSQIPREDQRRVFEPVPQGVRKIILSTNIAETSVTIDDVVFVIDSVKAKMKVFTSHNNMTNYATVWASRTNMEQRKGRAGRVRPGFAFHLVSRARAERLAEHATPEILRTPLHELALTIKLLKLGDIRDFLNKAIEPPPLDAVVESIALLRDMDALDKDCQLTPLGYLLAKLPLEPRLGKMVILGCLFNCGDACATIASGSCFPEPFETPSDRRRLGWVHKQFSGRRHSDHVAMLSAYQAWEDARIKLRMPHKQAAALVALRKAIDVLLCRVAQSPEIITYPNHEDGRIIAMFKNLSKANVGHVFQQRPLMGGMGPGGPPRGRGGIRGGFTGPRGGRRGYQGPRHFRAPRGGGYGGGGGFRGGSRGGFRGDLAEEESQCAFQSRLFCPKFIST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L5M7</accession>
    <name>A0A7D9L5M7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 5">Bis(5'-adenosyl)-triphosphatase</fullName>
            <ecNumber evidence="1 5">3.6.1.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A057474</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4 5">
            <text>P(1),P(3)-bis(5'-adenosyl) triphosphate + H2O = AMP + ADP + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:13893"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58529"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.1.29"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.29" evidence="1 5"/>
    <dbReference type="EMBL" id="CACRXK020012884">
        <property type="protein sequence ID" value="CAB4024179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L5M7"/>
    <dbReference type="OrthoDB" id="680339at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047710">
        <property type="term" value="F:bis(5'-adenosyl)-triphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031625">
        <property type="term" value="F:ubiquitin protein ligase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015964">
        <property type="term" value="P:diadenosine triphosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072332">
        <property type="term" value="P:intrinsic apoptotic signaling pathway by p53 class mediator"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032435">
        <property type="term" value="P:negative regulation of proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006163">
        <property type="term" value="P:purine nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01275">
        <property type="entry name" value="FHIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.428.10:FF:000011">
        <property type="entry name" value="Fragile histidine triad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052677">
        <property type="entry name" value="Dinucleoside_ppp_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039383">
        <property type="entry name" value="FHIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019808">
        <property type="entry name" value="Histidine_triad_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46981">
        <property type="entry name" value="BIS(5'-ADENOSYL)-TRIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46981:SF1">
        <property type="entry name" value="BIS(5'-ADENOSYL)-TRIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00892">
        <property type="entry name" value="HIT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00047780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU366076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4024179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18667" checksum="14528B33857F2465" modified="2020-12-02" version="1">MATEASFRFGQHIIKASVVFFRSKLSYGFVNRKPVVSGHVLVAPLRIVDRFCDLTEDEVADLFLSTQKISGVVEREFKASSLTVAIQDGPDAGQTVRHVHVHILPRRKGDFHDNDDVYKVLERHDKDEIQESETMNGVTVVDGAEIFRSEEEMSKEATQLAQFFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6V0</accession>
    <name>A0A7D9L6V0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Hydroxyacid oxidase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A089298</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014539">
        <property type="protein sequence ID" value="CAB4027004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6V0"/>
    <dbReference type="OrthoDB" id="25826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10578:SF107">
        <property type="entry name" value="2-HYDROXYACID OXIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10578">
        <property type="entry name" value="S -2-HYDROXY-ACID OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4027004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11135" checksum="DE80360E071476DB" modified="2020-12-02" version="1" fragment="single">MPNNELNNEPVCISDFEIFATRHLPKGAFSYYASAANDMQTLGESTAAFKRLRLLPRVLRNVSSIDMSTSILGEKIEVPFCIAPTAMHKLAHPEGELATAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFL0</accession>
    <name>A0A7D9LFL0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065741</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017970">
        <property type="protein sequence ID" value="CAB4031902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFL0"/>
    <dbReference type="OrthoDB" id="410381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF8">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="166"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="373" mass="42781" checksum="78AA96FD53673FD2" modified="2020-12-02" version="1" fragment="single">LIQLTDVNKPSGIIWVQVDYEDVGRKTLQEKRTLYVRGIQSTWTPIKPVTTQFPVGRTKSAQVVRKQFPLRPASAKTVHRSQGDTQTQIVVNLNSNRAFPHIHYVALSRVTTIEGLYITDLCEDKISVDQRVVKEMEILRTEQSLNLCFKPLYMLDQSDLKVCYLNARSLHEHIEDVRKDINYSSMDIVIFTETRFNSSGTDDIYNIDGYRLFRNYVSQGTGPGRSYGGTAVYSRVPLKQGYPYVHNVNGIEFTIIKTESNPHLNIIGVYRSPSIAISRLLFSLRSVLDEDSSAQNIIIGDFNVNWMVESDRQSLYNLMVVQNHYRQLITGFTTDNRTSIDHLYTNLIEEEIEAGILETYFSDYKAIWASLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LL44</accession>
    <name>A0A7D9LL44_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088156</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022213">
        <property type="protein sequence ID" value="CAB4036600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LL44"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="74" mass="7876" checksum="6F5C4A33DE286401" modified="2020-12-02" version="1" fragment="single">AVPANNVSNTKGGTNIVPDPVGADVARKICAQVVVVIVAVYGVKIKSRTHHVPDEMTFVRERPPRNITQTTANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LXP3</accession>
    <name>A0A7D9LXP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protoporphyrinogen oxidase isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026155">
        <property type="protein sequence ID" value="CAB4040002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LXP3"/>
    <dbReference type="OrthoDB" id="419752at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54373">
        <property type="entry name" value="FAD-linked reductases, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amine oxidase" evidence="1">
        <location>
            <begin position="43"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="20291" checksum="6548CF3E4D641773" modified="2020-12-02" version="1" fragment="single">MVYNLEENSGSVVKGLLFRKSPEIPKDANSLVAKAFAENWCQWTFEKGLTTLVEVLENKLLESGVTILKTTHLTSIKINEDKKIEAKGARKGDVFVADHLISGISSKQLAGILPEEHAVLAKHLLKINAATVAVVNLEFDGSVLDIEGFGLLYPSRESRKVFGVVFDSCTFAQGDRRSSKSTRLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M108</accession>
    <name>A0A7D9M108_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082156</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029499">
        <property type="protein sequence ID" value="CAB4042114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M108"/>
    <dbReference type="OrthoDB" id="6105938at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.20">
        <property type="entry name" value="Apolipoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58113">
        <property type="entry name" value="Apolipoprotein A-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="16124" checksum="40E33823B022B463" modified="2020-12-02" version="1" fragment="single">ELSCTHCMVLTHNKQNHSCVSVEEVAQKQREILESSSATLDEKLSEGKKALNNISGVMKSLEENTSATKEKIKQQKENIAKSVVDKLDERAKKMYEEVDEIHDELHTELSQQHDEIKEYIDKVQGNFSRKEVDSWTLMVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPL9</accession>
    <name>A0A6S7FPL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">WD repeat-containing 25 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000433">
        <property type="protein sequence ID" value="CAB3981834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPL9"/>
    <dbReference type="OrthoDB" id="256303at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053053">
        <property type="entry name" value="WD_repeat_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44566">
        <property type="entry name" value="TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44566:SF1">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="338" mass="37576" checksum="D72794BAD731FD0B" modified="2020-12-02" version="1" fragment="single">MMNAIVASYASSDSDDEIHSGQDSMWSVHNTQPGHESIRSVQNLQQHNQDEGVLSLVDSTISAQDSQQRNYSQEENKVKLPVLSKKCLSLHTSQSVRDIPVLVNDNSQHTGSIMIVNQGVMKIKGTKRTSAGIEPQQNSNITTLGNFVPCVKKDTVMPYIPKAKRTKHANKQQSTDGISSNDFLNLPSLVFKKAKLFANKNISRYYAPKRRVIHFDAHQGCINRISWNPCFQDFLLSASMDGVVKIWNVETTPSCVQQVSSHTQAVKDAKWNKDGVNVLSGGYDKFSRITDVNAGKEVCTNKHNSFVTCVVYHPSDANVYLSGTSNDGIFAWDIRTQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQH4</accession>
    <name>A0A6S7FQH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075659</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000241">
        <property type="protein sequence ID" value="CAB3979907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQH4"/>
    <dbReference type="OrthoDB" id="5986458at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="12982" checksum="9FE38795E30AD5D3" modified="2020-12-02" version="1">MEFVKCLKGTSEGPANEHPVIASKASFKHPAGIDVLKIEPGKNEVALVCNKGNGCIRYIQNVQSITGDKFVGTVKIINTPHAWKPERVSVLQNSHTAAISESTKILLLTIDASRNYGQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSI0</accession>
    <name>A0A6S7FSI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060123</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000520">
        <property type="protein sequence ID" value="CAB3982595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSI0"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="629" mass="72218" checksum="95BE8C3DD1025C4D" modified="2020-12-02" version="1">MASEDWTTVYSALDVDEKVSAYNSIIIKMLYEFLPEKTIRVHHSDKPWITGNIKMQIKARQKAFSRGDQPRYKQLCEKVANLIAKAKATYYRSKASEFRTSNQSKWYNCIYSLVNAENTTHTQFPHRPENLDLSDLAEKLQKAFTKPWSGRYTNVAFEIPEVNHPHKNNKPPLPSIGQVKAVLKHLNPRKATGIDKVPAWMLKQYHKDLAPVVYDIVCCSISQCCYPSLYKHALISPVPKVQPPRDINNDFRQISVLPHLAKILEKIQLQLNIEDLKIKNNQHAFTQHRSTVSAFISTTQSWFNATDCSKTGKMGQNGQLNTLAAMNINKPFWLWIKSFLSGRVQQVNLNGTLSSIATCPAGVPQGSVISPILFNTYINDLEDALPEQLKVSTNKYADDCTQHQIVSVDSNSNLQQSINEVNNWAVLNKMAINARKTKDMWISFTDAIPEPPRLRIGNELIERVNAFKLLGVSFQNNLKWNAHVEEITRKANKRLYHLRECRKSQLPAEVGIITYQSKIRPILEYASPVWAGLPNYLRDEIERVQSRSLRILGLEKDYLPPLNKRREEATSREVDRFMNDPHHPCRSVLPKLINNQYNLRNIDRNRNISFFSGTERHKHSFSGRACKYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FV32</accession>
    <name>A0A6S7FV32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhophilin-1 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063468</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RHPN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000255">
        <property type="protein sequence ID" value="CAB3980072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FV32"/>
    <dbReference type="OrthoDB" id="64867at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051497">
        <property type="term" value="P:negative regulation of stress fiber assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00136">
        <property type="entry name" value="PDZ_canonical"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.280">
        <property type="entry name" value="alix/aip1 like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.160">
        <property type="entry name" value="HR1 repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004328">
        <property type="entry name" value="BRO1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038499">
        <property type="entry name" value="BRO1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011072">
        <property type="entry name" value="HR1_rho-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036274">
        <property type="entry name" value="HR1_rpt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047138">
        <property type="entry name" value="RHPN1_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23031:SF15">
        <property type="entry name" value="LD12055P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23031">
        <property type="entry name" value="RHOPHILIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03097">
        <property type="entry name" value="BRO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00595">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01041">
        <property type="entry name" value="BRO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00742">
        <property type="entry name" value="Hr1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46585">
        <property type="entry name" value="HR1 repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="PDZ domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51180">
        <property type="entry name" value="BRO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="607" mass="68919" checksum="C04ED03B0075E4D5" modified="2020-12-02" version="1">MTTERRLSDKERAKLIYGEENLDQFVSSDPMRATLRGAAQAKRQHLNRQIFKNLRLRDGAEKMLQATEGQLVNNKKVQDTLRLEISFYDSRLEVLYNELANLKSSFDIYQSATRTGFPMIAISLKDTVDIEWREAIEDFIETHYHENPEQFRDEIERLIELRQVMQTPERNEKGVKLLYEYYHHLTLVEKRMFTNKSFAGIQFVWFDSLTAHQTSSSSLTYEKANVLFNIGVLWTQIAAKKEFNTEMKSAQEAINALQKAVGIFTYLKQSVRENLSKDLTPNVLEVLVDIFKVQAHECILNWDMRESDNEDVECYNILAREAAQLSGRYEVLKESMSETASIPPSWCTLAEVKSLHFKAIAHYYAALILLQNYDPDFTDCDHDVSGTEEKRLSTLVELNKIATWLMNEDSRTDKAKSHLKKAIVTEKEALQVASNDRFITRLECIQKVLNTFSSQIKNKLSSVDISGDLDLIASVDDINCSTDRKDKVIGPEFTKYNVKDIFAGLGPLNVFNAKIAYHPPKTVTITRDEQGGLGISIRGSGPTIICKISPKRQHAGIQAGDIIMAIGSHKVKCLNHKQVSRIIQESGQSVTLTLLSAVSPSVILHAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVT2</accession>
    <name>A0A6S7FVT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Dual specificity kinase CLK2 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A030095</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. Lammer subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000117">
        <property type="protein sequence ID" value="CAB3978490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVT2"/>
    <dbReference type="OrthoDB" id="283111at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043484">
        <property type="term" value="P:regulation of RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14134">
        <property type="entry name" value="PKc_CLK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051175">
        <property type="entry name" value="CLK_kinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45646">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE DOA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45646:SF11">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE DOA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="35"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="80"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00037966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3978490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="54188" checksum="EEE706369B14BCE5" modified="2020-12-02" version="1">MKFEENMPRSRRRREGSSEESSVASYRRKRHRRSSPYASHSSRSTYRSRRYEDSKSSTGSGRRRPRSRSRSERRQRRRRDSPNDSKYSKERQGSEEKGRKDGTSQMVQDDKDGHLKYKPGDWLNERYKILSMLGEGTFAKCLECYDSSTRQTVAVKVIKNVDRYRDAAKIEIKVLEKICQRNSADKNLCIMLVDWFDHHGHICLIFERLGLSVFEFMKENSYQGYPLDQVRHISYQLTAAIKFLHSMSLCHTDLKPENMLFVDSSSDLFRNEKMTRDRIVRKPDIKVIDFGSATFEDDHHSRTVSTRHYRAPEVVLELGWSYPCDVWSIGCIMFELYTGFTLFQTHENKEHLAMMERILGRLPSSMCWESKKTKYFYKGRLDWDERSSDGKYVRENCKSLRKYAKSKEESHQSFFDLLECMLEYQPEQRITAAEALEHPFFDQMCSPSRTNSSSPRTSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVY1</accession>
    <name>A0A6S7FVY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013714</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000292">
        <property type="protein sequence ID" value="CAB3980449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVY1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="12712" checksum="818CFF2EFD86610E" modified="2020-12-02" version="1">MSDTKKELVQDLYDAALLTSGVVGISYAAKTIAGKSLGAPMTLEGAMKLGVAVAGSSVAVAYLKDKGYVPKTIGAGFLFSHLNQNGYKEEVQRHNRALEELAAAKEKFYESEVKRRNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXU1</accession>
    <name>A0A6S7FXU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009036</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000157">
        <property type="protein sequence ID" value="CAB3978981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXU1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="14845" checksum="A5E111A92C551874" modified="2020-12-02" version="1">MKGTLSFQSSTIEQDTEFSHIDTVLSSLAPNTSSSTENELPGSLPVPLLADFGHFEKQDPEYILVESNDENPDDTKTNSNDNIPRTSETSARDNDNAGESVEGRSVERGSVEDVNETAKEEIDGQQHAENVVDSGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZ98</accession>
    <name>A0A6S7FZ98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000363">
        <property type="protein sequence ID" value="CAB3981206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZ98"/>
    <dbReference type="OrthoDB" id="5985914at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="292"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="38178" checksum="A29037648AD465E2" modified="2020-12-02" version="1">MDKGDEDILTGEAKGFVDQVLKELPCTEDRLNELRVHLKQDEGDLTVQDGLLLHGKRLVIHSSMRLDILSKIHSGHLGITKCREEQERQCGGLLKGKTYLIIIDYFSGYPEIALLNSITSTSVIMHMKSCFARHGIPDRVISDNGPQFSSVEFSKFSSSYGFKHQTSSPRYPQANGKIERAVKTVKSLLKKSKDQYIALMSYRDTPLENGYSPAELLFGRKIQTTLPVVSQHLVPTWPYLVAVREKEERIKKRQKKNRKESGTIINKFETPSSYVVKTPTTTVRRYRRHLIEDPSKNTCEEPQEATSTTSGTAVPENNPGYYTRSSRLSAPPDRLVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2N8</accession>
    <name>A0A6S7G2N8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">39S ribosomal L12, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A080395</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001137">
        <property type="protein sequence ID" value="CAB3987214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2N8"/>
    <dbReference type="OrthoDB" id="250175at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005762">
        <property type="term" value="C:mitochondrial large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00387">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1390.10:FF:000001">
        <property type="entry name" value="50S ribosomal protein L7/L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.710">
        <property type="entry name" value="Single helix bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00368">
        <property type="entry name" value="Ribosomal_bL12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000206">
        <property type="entry name" value="Ribosomal_bL12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013823">
        <property type="entry name" value="Ribosomal_bL12_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_bL12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008932">
        <property type="entry name" value="Ribosomal_bL12_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036235">
        <property type="entry name" value="Ribosomal_bL12_oligo_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45987">
        <property type="entry name" value="39S RIBOSOMAL PROTEIN L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45987:SF4">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN BL12M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00542">
        <property type="entry name" value="Ribosomal_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16320">
        <property type="entry name" value="Ribosomal_L12_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="ClpS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48300">
        <property type="entry name" value="Ribosomal protein L7/12, oligomerisation (N-terminal) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Large ribosomal subunit protein bL12 oligomerization" evidence="5">
        <location>
            <begin position="58"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="Large ribosomal subunit protein bL12 C-terminal" evidence="4">
        <location>
            <begin position="117"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3987214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="20589" checksum="C9B2447B8280F014" modified="2020-12-02" version="1">MDKTVKMAAVRGIAFSRILARQCVRWSRVRHLSAIPAQQEPEFDTSLTEKHYPEHIVNIVNQISQLTLVETAELNELLKAKLKIPDAPMMAMGAMPMAQATEQSEAAEEEKEEQTEFTVKLTAFDAGGKVKLIKEIKSIIEGMNLVQAKKFVESVPQVLKENISKEDADKLKTLLEAVGGTVEIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA45</accession>
    <name>A0A6S7GA45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001352">
        <property type="protein sequence ID" value="CAB3988605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA45"/>
    <dbReference type="OrthoDB" id="10072451at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00084">
        <property type="entry name" value="HMG-box_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09011">
        <property type="entry name" value="HMG_box_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="417" mass="45928" checksum="719DE786BA641701" modified="2020-12-02" version="1" fragment="single">KPTHISYFGTPVGRFTNTKQCFENNLGYKRGMNSTKKGLAELHIECASAVGFSVNQVKNWISNYKASRRLSAEPRQNAAKASLLRKRSGYNVFAKEQLTEGDSALKKQKFSELGTRWKDLTDSQKEDYREKARNLKDSVQGLTDSQRSKRIVKNIMKEVAELDNINGAECLVVCLDGTLVGKSSPLPYSKVQSLGLKFDGLPSELVDELGCYPKQPNHYGTQQKRKLWERRESFSFTLESRCLETNASNMASSPISSDISSTADPLLPPSTLQGHHKTACMHEDAISVTQAALSPSLEEPSSGESSMSSQLQHQGHSFVAAISQSATPPPIQSKNAGQQLTFSEIIDEKICLAASNGLSLQFKEVEVVSKKDDCSIKPPVLGPYDNEEPVEIGGFYLWPISKLSFLDKTGIQVGINK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKE5</accession>
    <name>A0A6S7GKE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001537">
        <property type="protein sequence ID" value="CAB3989706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKE5"/>
    <dbReference type="OrthoDB" id="2435398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="678"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="678" mass="77368" checksum="5EDCA4AD986D3552" modified="2020-12-02" version="1" fragment="single">MIIKDFVVDKDTDILALTETWLPPSGNDLIIGDLCPTGYSFLHTPRHGSIGGGVGLLFKESLNIKRNVQEVFRSFEYLDSSFLNFLHIRIIVVYRPPPSSANSLTSTLFFEEFSSFLEGIIVSPGQLLIAGDFNFHLDNPNDPLTKRFVDLLASFDLKQYISGSTHASGHTLDLIITRSEENIVNHYNIFDPLISDHSVVHLQLLIRKPKFVKKHLLLRNLRAVNIHKFKTDVLNSFLLKNFTTMDLVSLVNEYDCLHTILDNHAPIKSREITLRPKAPWYTNEINDKKRIRRQLERKWHKTRTNADWNRYKQQCYAVNKLIDSSKSAYYTDLINNGSSDQKTLFKTVSNLLHTNTIIRYPSSPDPMSLANSFSDFFTQKIVKIRGDIEDELLSKNIENPIPDADSCPYEFHTFREVGKDEVLHLIQRIATKSCSLDPLPVVMLNHCFKDILPVVVRIINLSLESGTMPDSLKIAVVQPLLKKYNLSYEEFCSFRPISNLKFVSKSIEKAVAVQLTDYLTENHLHEKFQSAYKPCHSTETALLRVQNDILQALDNGDSVILVLLDLSAAFDTVDHLMLLTRLSKRFGIRGRVLDWLTSYLTSRKLFIRVEGTDSLLSDLDCGVPQGSVLGPLLYSLYTAPLADVARRHNLRFHFFSDDGQLYIAFKTNDRDDLISSKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GM75</accession>
    <name>A0A6S7GM75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001745">
        <property type="protein sequence ID" value="CAB3990889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GM75"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13258" checksum="6D1EFC31C90B36BD" modified="2020-12-02" version="1">MSKQESGLSEAQAKYVNSWFDGRTFTREDPKFKYITNARYQNVCAKIELVEEELTSYEMKSRISDQNLTGGISRKGTCLNCDKCCKRGNKTILGDRNMLIGNIQRILPEIRQHFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GN09</accession>
    <name>A0A6S7GN09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Potassium voltage-gated channel Shaw-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A024828</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001735">
        <property type="protein sequence ID" value="CAB3990846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GN09"/>
    <dbReference type="OrthoDB" id="433309at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005251">
        <property type="term" value="F:delayed rectifier potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001508">
        <property type="term" value="P:action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000002">
        <property type="entry name" value="Potassium voltage-gated channel subfamily a member"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003968">
        <property type="entry name" value="K_chnl_volt-dep_Kv"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537:SF252">
        <property type="entry name" value="POTASSIUM VOLTAGE-GATED CHANNEL PROTEIN SHAW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="VOLTAGE-GATED POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00169">
        <property type="entry name" value="KCHANNEL"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01491">
        <property type="entry name" value="KVCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0407">Ion channel</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0630">Potassium</keyword>
    <keyword evidence="5" id="KW-0631">Potassium channel</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="235"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="263"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="294"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="370"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="402"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="431"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="domain" description="Ion transport" evidence="14">
        <location>
            <begin position="233"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="538"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="541"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="573"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3990846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="573" mass="64802" checksum="66BC228A4AD0677F" modified="2020-12-02" version="1" fragment="single">CNSHDTGSENVCMAGGLDWTDTCHNMCVSSRASLLDERLPPWSIDLRISFVIRSAGCNRNKFCYTIRRVYTFPTTADGNKNFVIRCRSWRMVRNMFTYLLNYIRNLHNLLRGLLIPSEVTAWEIKEVNVRACNPSNRHKVLCTRSSGNRVIGMLGTRSSGNRVIGMLGTRSSGNQENGWDFITNSNYKKSVPFPSEKCSYCNRRYKFGSVMYCLIFLANERYLNPIRTPTKQIIGYTSLLFIILSVFIVCLESLEYFEPDDRYIALVIIEGICVAWFTVELAIRLIFCPEKKAFFKNIMNWIDFLAIVPFFINVANSSSNTSRDSSNGNAEHEILLIIRLIRIFRIFKLSRHSTDLQILGHTLKASIRELVLLVFFLLIGVVIFSSLIYYCEKDAPNTKFTSIPAAAWWAIVTMTTVGYGDMAPVTIPGKIVGSFCAVSGVLMIALPVPVIVNNFSLYYSHAQARLKLPKKRRRVLVNADNALKTDLIFSERDSIALGNRSSSIKPDVADKQHCSISITDETNSSLPRRFSRRESHLFGANSDTPSTSNHPPGLTISKRRSLMPRVPVLPEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRM9</accession>
    <name>A0A6S7GRM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcription factor grauzone-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072701</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002090">
        <property type="protein sequence ID" value="CAB3992639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRM9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13912">
        <property type="entry name" value="zf-C2H2_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12220" checksum="EAB9DBDC3304D9C7" modified="2020-12-02" version="1">MSHLRDGLLLCHTCGREIIRGQAHANEIQKSDDHFDCDKCNKQFPDIESLSQHKAKDHGMSYQCDVCKELEAREATGIGYIGCACDAEFEIATELEDHMSMHDNMLPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSU8</accession>
    <name>A0A6S7GSU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Tubulin epsilon chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A082163</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the tubulin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002519">
        <property type="protein sequence ID" value="CAB3994715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSU8"/>
    <dbReference type="OrthoDB" id="1662883at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007017">
        <property type="term" value="P:microtubule-based process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02190">
        <property type="entry name" value="epsilon_tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.600:FF:000007">
        <property type="entry name" value="tubulin epsilon chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1440:FF:000017">
        <property type="entry name" value="Tubulin epsilon chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.600">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1440">
        <property type="entry name" value="Tubulin/FtsZ, GTPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004057">
        <property type="entry name" value="Epsilon_tubulin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008280">
        <property type="entry name" value="Tub_FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000217">
        <property type="entry name" value="Tubulin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018316">
        <property type="entry name" value="Tubulin/FtsZ_2-layer-sand-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036525">
        <property type="entry name" value="Tubulin/FtsZ_GTPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023123">
        <property type="entry name" value="Tubulin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017975">
        <property type="entry name" value="Tubulin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003008">
        <property type="entry name" value="Tubulin_FtsZ_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11588">
        <property type="entry name" value="TUBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00091">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03953">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01519">
        <property type="entry name" value="EPSLNTUBULIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01161">
        <property type="entry name" value="TUBULIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00864">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00865">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55307">
        <property type="entry name" value="Tubulin C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52490">
        <property type="entry name" value="Tubulin nucleotide-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00227">
        <property type="entry name" value="TUBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 5" id="KW-0493">Microtubule</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="231"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="246"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3994715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="486" mass="54730" checksum="978119C71E1916CA" modified="2020-12-02" version="1">MTQSIVVQVGQCGNQIGCRFWDLALREHASINKSGRYDESLSSFFRNVDTRYEDPKDIPVGDGKGKIRSLKARAVLIDMEEGVVNETLNGPLQDIFDCKQLITDVSGCGNNWATGYMMYGSQYHDTILETIRHAVELCDSLQCFFLLHSMGGGTGSGVGTNVLGLLEENYPDVYRFTTAVYPSDDDDVITSPYNSVLAMHQLTEKADCVLPIENQALIDITNKIYDAMPPSRPGKKVYPSKETQVKETSAITSSEKGATKPSQEKPFDHMNNIVANLLLNMTSSARFEGSLNVDLNEITMNLVPFPKLHYLVSSLTPLYSLIDVNLPVGRLDQMFTDAFSKDYQLIKANPKQSLYLACALIVRGKAEVSDIRRNIERLKPNLKFINWNEEGWKTGLCSVAPVGQPYSLLSLANNTCIQNTFHNLKQRFMKLYRRKAHIHHYNNVDGFEPFIFDDSLESLNYLINEYEMLNRTIGQPVEYPTRLSIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXZ1</accession>
    <name>A0A6S7GXZ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Scavenger receptor cysteine-rich type 1 M130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041701</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002607">
        <property type="protein sequence ID" value="CAB3995139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXZ1"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="23716" checksum="387AC6528081554E" modified="2020-12-02" version="1">MDLLFTILDSLRGSVNALPTDNVNISNQDTLKRKHKSKKSNKKSKTSEKQSKDEQRCITDSLSKTTQTSQPINEVSNVNKNTTSSPKSSQSPSKKVTVVAGDSILKHVEGWRLSNTSNHVVVKSFSGPTTSDMEDYLRPVLRKEPNKIVLHIGTNDINYQTAQTVAEGVLNLGIQITQDSPTTDILISGILPRTVKPNLMSKVNQANGLIKAFCIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4U6</accession>
    <name>A0A6S7H4U6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075376</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003653">
        <property type="protein sequence ID" value="CAB3999694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4U6"/>
    <dbReference type="OrthoDB" id="5975594at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038807">
        <property type="entry name" value="CCDC150"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35352">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35352:SF1">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="40122" checksum="E74FDA11DCF4CC42" modified="2020-12-02" version="1">MREKDEAMKATERVVRETDLYERKYSKQIDSLQDALIQSKEDNKKLAGTLDAVITSHTQLQSSCESLQTELGKRDSRLMCLEKERLETETKIMDLNSEVELLKSKLMHQDETESNEVNAVRKTLQLLEEDREKLLNTVEPLMKTNKDLQESLEGLANELKQKNNEIKKLRASSVNVKREMEIETVAMETKVDDVRKEFDAEMKEVKKHHKKEISKLRKDFQEMVKLKNSLKDENVTLKSVQEETETRHKKLREKFKQTKHELQECLKLHSEQRTELDAARDRIHTMSRELAILEKLKWEYTQNNMEQARSLQEFISQLTELQEEFRNLAETQQVTSLLCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7V9</accession>
    <name>A0A6S7H7V9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA RNA-binding KIN17</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A037423</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the KIN17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004198">
        <property type="protein sequence ID" value="CAB4001875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7V9"/>
    <dbReference type="OrthoDB" id="10266249at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:DNA damage response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13155">
        <property type="entry name" value="KOW_KIN17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.30:FF:000021">
        <property type="entry name" value="DNA/RNA-binding protein KIN17, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037321">
        <property type="entry name" value="KIN17-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041330">
        <property type="entry name" value="KN17_SH3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041995">
        <property type="entry name" value="KOW_KIN17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_uL2_dom2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12805:SF0">
        <property type="entry name" value="DNA_RNA-BINDING PROTEIN KIN17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12805">
        <property type="entry name" value="KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18131">
        <property type="entry name" value="KN17_SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25092">
        <property type="entry name" value="SH3_KIN17_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KN17 SH3-like" evidence="2">
        <location>
            <begin position="15"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="Kin17 KOW" evidence="3">
        <location>
            <begin position="76"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4001875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15164" checksum="45FA4305D8A9B77A" modified="2020-12-02" version="1">MKEEEAKKAKKETLRKENWLMKGIVVKVVHKRLGEKYHKKKAVVKEVKELFTGIVKMVNGGDVLKIDQTHLETVIPAIGRLVLIVNGRYRGQKGTLIALDEKTFSTSVEIKEGEHRGRIVDKLPYEDISKLDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HB67</accession>
    <name>A0A6S7HB67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Protocadherin Fat 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A012669</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004085">
        <property type="protein sequence ID" value="CAB4001436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6252479at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005911">
        <property type="term" value="C:cell-cell junction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11304">
        <property type="entry name" value="Cadherin_repeat"/>
        <property type="match status" value="18"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00173">
        <property type="entry name" value="SH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000104">
        <property type="entry name" value="cadherin-23 isoform X1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000020">
        <property type="entry name" value="Dachsous cadherin-related 1b"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000015">
        <property type="entry name" value="FAT atypical cadherin 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000024">
        <property type="entry name" value="FAT atypical cadherin 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000039">
        <property type="entry name" value="FAT atypical cadherin 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000181">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000092">
        <property type="entry name" value="Protocadherin 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000275">
        <property type="entry name" value="Si:dkey-30k22.7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.60">
        <property type="entry name" value="Cadherins"/>
        <property type="match status" value="18"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.505.10">
        <property type="entry name" value="SH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050971">
        <property type="entry name" value="Cadherin-domain_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002126">
        <property type="entry name" value="Cadherin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015919">
        <property type="entry name" value="Cadherin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020894">
        <property type="entry name" value="Cadherin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000980">
        <property type="entry name" value="SH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036860">
        <property type="entry name" value="SH2_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24025">
        <property type="entry name" value="DESMOGLEIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24025:SF23">
        <property type="entry name" value="NEURAL-CADHERIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00028">
        <property type="entry name" value="Cadherin"/>
        <property type="match status" value="18"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00017">
        <property type="entry name" value="SH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00205">
        <property type="entry name" value="CADHERIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00112">
        <property type="entry name" value="CA"/>
        <property type="match status" value="18"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00252">
        <property type="entry name" value="SH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49313">
        <property type="entry name" value="Cadherin-like"/>
        <property type="match status" value="19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55550">
        <property type="entry name" value="SH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00232">
        <property type="entry name" value="CADHERIN_1"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50268">
        <property type="entry name" value="CADHERIN_2"/>
        <property type="match status" value="18"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50001">
        <property type="entry name" value="SH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 12" id="KW-0106">Calcium</keyword>
    <keyword evidence="7" id="KW-0130">Cell adhesion</keyword>
    <keyword evidence="10 13" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 13" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="14" id="KW-0727">SH2 domain</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="disulfide bond" evidence="13">
        <location>
            <begin position="2182"/>
            <end position="2191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4001436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2671" mass="292607" checksum="B1AA08D78DBE2A98" modified="2020-12-02" version="1">MEGSESSAFVINLSNGKITTKSTLDYETKKSYQFQVVATDGGQPAQNGTTMVTVNVVDVNDNRPKFGGPYVESIPEDKPVGQSVITVNATDDDSGPRGDIRYSIVGGNIGTAFAIIDARSGVITVKSPLDRETSSAYKLTVQASDRGSPSMNARATVTITITDVNDNSPIFQGLPYRRSIPEDFSTSDVILQVTATDKDAGTLGKVSYSIKSPQIAKETFSIDKNNGNIRLIKSLDYEQKQGYTFTIVARDGGGKETTATVQIYVTDVNDNAPVFENDPYRADVAENAKIGHLVGTVIAKDVDSGPFGRVTYSITNGNTGKAFRIDAAGRVTIMSSLDRETLQKYTLTIRAQDDGQPAKSSTTTFTITVTDINDNKPTFGRDSYSFNIAENNAVNAVVGKLGQATDEDAGNNAKIVYSIVSGNVNTAFEFKTNGDLIAKKRLDREDIASYSLVIEAKDQGNPSLSTTVPVKVVVDDKNDNAPKFTEKAYSCSIDENSASNSRVCFVRATDADIGKNGEVVYELVSSSNEFSVSQNGGEIMTTVSLDRETTPSYTLRIRAKDLGDPTMNSIVTVTVTVVDKNDHEPKYDQDYSFQVKENATVNTRVGQVSASDADEGLNGKVVYDITGGNTKSAFSIDKNTGVISVKSGLDRETVANYKLVIRASDQGTSVLSSSKVVPIKILDVNDNPPIFTKSPYFGEIAEDAAVGSRVVQVKATDKDEGVNSEIKYSITGGDRKNNFTINEDSGLITTATKLDYETDKSYQLTVTATDQGNPTRTSTCQVNITVKNTNDNAPTFVPGSPIVYVSEAVAIGTKVVKFNATDEDGNSLSFSISEGNTNDDFAVDKDTGLLTTKRKLDREKIPRYNLTVTVTESNTRATGQSSSQNLSVIVTDENDNGPVFEPKEYAKDIDENTPAARLMYRLAGALLTVKATDADAGKNAEITFSLDSISTKKFTIDSTTGLISTKIPLDHEEKSNYDITVTARDSGTPSLSSAAKVQVTVNDLNDNKPRFTKDYTTTLRENTAKGRTVLRVEASDPDSGENGKINYTITSGNDLGYFTIDAVKGIISVEIPPDREQYPSFTLNIRATNKPAFVPSTPSAKTDCSVVITIEDANDNRPNITNTITTVQVEENSPVNTQVLDVNATDADIGVNGEIVYEIVQGNINNAFKIVPDSGVISTRGAIDREAIASYTLKVQVTDKGSPELFSTKDFVVDVSDLDDNPPVFNPTVYDESVPESANLSTIVVRLLATDKDIGNNAKIRYSIASGNDEDHFNIDSDKGEIYTSAVLDYEKLKEYTLVVEAKDTKHTAQADVTIRVEDINDNLPVFKPSSYKISIPENQGLGKTIVNVNATDKDPFGGLTYSLHSPNNMFTVDPASGKISAVSELDRETTDYYNLTVRATDGGSPALSDTAVVEILITDINDNRPIFNSSQEDISVLENSPVGKVLLKVAATDADIGVNAELRYKITGGNEAGKFKLDAVSGNLSVSGDIDREKVDAYSLEIVAQDQGKPYRQSTPLVVAIKVLDENDNDPVFTKSRYEQNITENLSSGAFVKEVEATDADIGANGRVTYAILSGAEGYFRIDNDTGIVETTKPLDREDIASFLITIEARDQGNPSRNSTTLLQVNVLDLNDNSPRLDTIVANVTEEQPKGEFVTRIVAIDPDQGRNGEVEYSLTIRGNQSLKIDAKTGDVITRVTFDYEEQKNHTFQIIATDKGNPPLSTTADLIINVLDIDDNCPVFNPKEYNVTIQENVPYGTPIVHVNATDVDTVGAKLEYGIRSGNTADTFTIHRYKGILQAGRSVDRETAAEYNLIVRAGHDYCGVNRTGIDIDESVESELSKSIAKVNIFLTDLNDNAPKFLSREDSYEYELKDIYINSLLWLNATDPDEGINAEFDFGLHGVTRNQQKRTLVVTATDKGTPSMSSNTTLDVTGIKCEAMRFSVSLVFNCSAQGNTVPEYRWFRNSVPITDWLKNGEYFIKSLTKNDEGFYSCIASSEAGNILSELHKFTVREPAKVVVHPKDIWVEVDKEARLSCRGSGDETITYTWFKNDKRIRSSTGVIADQPDLVFNNAIPEDAEKYHCEVHNYQDTQPDRSRTARIEVYTPDAVVDMELTVNKPLHKESCQYFNITNIKETVESMIEGEMAVVEFEKPSRLCNLTACSSDPCFNNGRCQVDGSDFICHCPREWTGKQCLIDVDECKSDTCSNNGVCVNRKGSFSCECRNSSTSGKLCQFREKVCNPNPCRKADCYPKEVKQRYECLGDVKAVAMVFTLDDARLPFKNWMLYDVAKEIENAINDAAVVQTREGGRSRRDTIIVDYSDCSVRVKQHKLVQDKQLNLQIILVCAQPPQQKYVCDAMFKQGMVTSCTDESGTREAKPKTDPPTISPQRVTLAFIVRKPNGKDKEASETINVLRERNIEEELGKHKMFDITLEARSLKNAKSGESDSGLSSGVIIGVVIGCIVLIILIILAIVIALLVTRQRGGKEFSIGGRAMLSRSQSTDAILSRDINLRELENAEARGVNNKTFSEIYEENNGNPSDLENGAFMVENPQQALKKHDQEYMKQLDSCPWFHGSISRSKAEDLLDANDNEGTFLVRSGLDMGEFYISVRTPNAEPKFRHISVNRRNENFVAVCGSEPRNFTTFDELVEYLRENPTQMEGISEDVILKGHIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HF29</accession>
    <name>A0A6S7HF29_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF6570 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A063403</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002434">
        <property type="protein sequence ID" value="CAB3994301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HF29"/>
    <dbReference type="OrthoDB" id="6141723at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="2">
        <location>
            <begin position="5"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3994301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16375" checksum="D2CD39C723911768" modified="2020-12-02" version="1">MQAPRGKQLKINGNVVNVPADVNSTVNMLPRMPHETGTIKVQLKRKLQDKSAALSLNIRPHQVFKVAAWLANNSSLYQQEGIVLNQKWDESFNARDDNVNIEPIPDENAEDLNENVDNSKDVDFSEDEAEIPAGVTDTINSYRFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIA7</accession>
    <name>A0A6S7HIA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020262</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004870">
        <property type="protein sequence ID" value="CAB4004326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIA7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16345" checksum="1E287A29AED20728" modified="2020-12-02" version="1" fragment="single">MTALKKQEKQLEVFKRVFKGIHNKGTLQQKGEMKTKPKLLLRSETVFRKNIQRVYNLCVKCPIPDLKEFLTYPPNVIVPKHFIDVESASSELFTRDAQCAADLLQQPYGSNGAASLCNKQSPRQRLRKKFLLSLGLKNVLMVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIG6</accession>
    <name>A0A6S7HIG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mastigoneme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004808">
        <property type="protein sequence ID" value="CAB4004099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIG6"/>
    <dbReference type="OrthoDB" id="5979449at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00519">
        <property type="entry name" value="Lipase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.10">
        <property type="entry name" value="Tumor Necrosis Factor Receptor, subunit A, domain 2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002921">
        <property type="entry name" value="Fungal_lipase-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001368">
        <property type="entry name" value="TNFR/NGFR_Cys_rich_reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46967">
        <property type="entry name" value="INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN,N-TERMINAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46967:SF2">
        <property type="entry name" value="SUSHI, VON WILLEBRAND FACTOR TYPE A, EGF AND PENTRAXIN DOMAIN-CONTAINING PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01764">
        <property type="entry name" value="Lipase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01411">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SMART" id="SM00208">
        <property type="entry name" value="TNFR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="653" mass="71677" checksum="A7E3F11676F4BD5E" modified="2020-12-02" version="1">MKFRALLLCLILIKQAFSLSCPAGSYFSSYSNKCYTCPAGSSCVGDNSRVRCKSGYYAENPGSTSCKICPAGHKCYYTDDAPVECSKGYYQDQTGQGSCKRCSSGEYNIQTGRSTKCDICPVGHGCWYIDGAPVKCSKGYYQDLPGKTSCKRCSSGEYNIQTGRSTKCDICPVGHGCWYIGQEPVKCSKGYYQDLPGQISCKRCSSGEYNIQTGRSTKCDICPVGHGCWYIGQEPVKCSKGYYQDLPGQISCKRCSSGEYSIQTGRSTKCDICPAGHACWYRNREPGKCSKGYYQDFPGKTSCKRCSSGEYNIQTGRSTKCDICPVGHACWYRNREPAKCSKGYYQDLPGQTSCKRCKGGQYNLQTGSTTCESCPAGSKCPNADKIPQPCGEGKYSSAESLKCSPCPSGTFCPSPSSLPIAPNNDTLLKSKIHNVAKYAAEAYQNKNDSALNSLRLIDSDNKVHGFVKYKGKTIIVSFRGTVDTKGWINNAKFLKRDYQSCKGCKVHTGFSTFYNSVQMQLLAKVSAFSHAHPNSKVIVTGHSLGGALATLAAVELAKAGYNTDLITYGSPRVGNKQFSEYVDKTMNGLNLRVTYKKDIVTASPPQSIGYWHVGREMHYTDLNTGYKLPPKIDVNYNRLNFGDHKMVNYEKLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLU8</accession>
    <name>A0A6S7HLU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042133</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005317">
        <property type="protein sequence ID" value="CAB4005796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLU8"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="405" mass="45944" checksum="A87D9B0EB5806BDA" modified="2020-12-02" version="1" fragment="single">MSVIDKHAPLKKKRIGNRKSPWITSHVVQKIRERDYLKRQFDITRDDEIWLQYKKARNETNNTIRQAKHNYFITNIEAARKDPRKTWRLVNDLNSRKVSDVTSVKKVNLYGNEITNAAEISDAFNSYFTSIGEKLASKIPSSNVNPVSYIQSTHSVFSFEEIGLSTVNCLLKTINANKATGPDKIPGRLLKIAADILSPSLTRIFNRSLSMGIYPTDWKMTKVLPLFKNGDKCDLSNYRPISIISAVAKVFGRTVYDQFYSYLTSNNLLSNYQSGFRASYSTVTALLESSNNWCVNIDKGLLNGVIFIDLKKAFDTIDHEILIRKLKCYGVDDNALSWFNSYLNNRKQKCYVNGKLSGSRSISPGVPQGSIIGPLLFLIYINDLPNCLNEGLPRMYADDTNISMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HU54</accession>
    <name>A0A6S7HU54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052936</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006335">
        <property type="protein sequence ID" value="CAB4009094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HU54"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="44048" checksum="4DEE1FF068FC2F52" modified="2020-12-02" version="1" fragment="single">MFFTKKKEYKKLIRKLKRKFHSETLNKIKSIADSNPKEFWNLVNKIKSSHSNCSNTISHDEWFHYFQDLNKINFSSDETRVEAQIVKDFRLWANTSDEILDKPISLQEIYNISRKLKHNKASSSDLLNNEIIKTSITSLAPYYVKLFNTILSSGVFPRIWSEGFITPIHKSGSKTEPGNYRGICISSCLGKFFTLILNTRLNNFLEENNILNNYQIGFRHGFRTSDHLLVLKTLIDSYKSSRKPIFTCFIDFRKAYDSVWREGLFFKLIKYGCSKKFVAILLNVYSSVKSAVKLEQGVTPFFQSHIGVKQGCNLSPTLFNIFINDIPNLFNSHCDPVKLDDTELSCLLYADDLVIMSDSESGLQRCLHNLETYTKKWKLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HY25</accession>
    <name>A0A6S7HY25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014396</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007090">
        <property type="protein sequence ID" value="CAB4011265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HY25"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="31"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="53" mass="5926" checksum="3C7737191FA68CC9" modified="2020-12-02" version="1">MDQYPPIRSSRKVEDKSRQSHDSDHNIPAPSSSDNSQGSSGLIRRNIYGDPIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYX7</accession>
    <name>A0A6S7HYX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006864">
        <property type="protein sequence ID" value="CAB4010666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYX7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11554" checksum="8EEAF087544330B3" modified="2020-12-02" version="1">MAEIKQACYDGTGDVDLWLMKMKFYCSTKKFEGKQEAHAIASKLEGAAFLCIARLDDELQDDPKEVKAALRKEFDKESIDHEKAVDELRGLRRKAVKHQHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I265</accession>
    <name>A0A6S7I265_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007508">
        <property type="protein sequence ID" value="CAB4012434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I265"/>
    <dbReference type="OrthoDB" id="5989402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="9856" checksum="88FFAEC1E5BF9ADC" modified="2020-12-02" version="1" fragment="single">KCLTEQASFRRKEQTYLANYVMKTKQAETELQCGLHCVADGSRASVNYKTSGIGKGLCELNSKTLQDTSDADGSLHNSEFSHLDIIIEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I441</accession>
    <name>A0A6S7I441_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Leucine-rich repeat serine threonine- kinase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089796</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007909">
        <property type="protein sequence ID" value="CAB4013495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I441"/>
    <dbReference type="OrthoDB" id="100767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01670">
        <property type="entry name" value="Death"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.533.10">
        <property type="entry name" value="Death Domain, Fas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011029">
        <property type="entry name" value="DEATH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000488">
        <property type="entry name" value="Death_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016729">
        <property type="entry name" value="FADD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15077">
        <property type="entry name" value="FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00531">
        <property type="entry name" value="Death"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00005">
        <property type="entry name" value="DEATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47986">
        <property type="entry name" value="DEATH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50017">
        <property type="entry name" value="DEATH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="26793" checksum="8E7A23F7A20449E9" modified="2020-12-02" version="1" fragment="single">CRKGEHFLHLARILKKKVSEICRQNFKFVKFICGPPCPNEACLGATFHAEDIQRPCESSSSESEKSGDDDVGSGHQEKVAGENKRGDQNEQRSHVISVDPDTFDPPYWCRAFDVTEFLNDWNPESIVQNENRRGMEEGSGSIQEECCVKECCLNLVSEKLGNSWKDLGRELNVPEPKIQNISVDDHGQKEQGLDVLYAWKNRLGSAANVTSLTDSLEKIGRKDVADLLVTHHKERHIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBV2</accession>
    <name>A0A6S7IBV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004733">
        <property type="protein sequence ID" value="CAB4003811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBV2"/>
    <dbReference type="OrthoDB" id="5981259at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="453" mass="51422" checksum="5782F4CE2A239DD3" modified="2020-12-02" version="1">MACPRPVTIDLTKSESESPDIIDLTDSLKHLSPSPSPPKKKNKTEKKPPHLNIFPFNEQSQFIEEPDTEFYKGDAGCPIYKASAPFLPSSEVCDIILNPGEKICTKIPLGCRRNATFILDTTCHDHADDFKADDNGSFRHHGTKFEFIEMDDDGEVTRIDKPINLTPGQYKLSRTYWVHSSTKTFKRRTVTLEDHEAKVWPVIVLQYSNTGTEEDVKLEPHRNSKKRCQPYYATATSTKQRIEEKAKSSLGPSSIFDELYEDGGGMMESSSFASLPRGISQVKYERTKLRRQHSKDTLAELIELCKQSNGKFLHSLQVSPDVRLVLVTKAQIADLVKFCCNPKNFSVFGIDVTCNIGDFYVTTTTYRHLMLLDKESCAHPNFPGPMMIHTNEDAAVFHYFMSTLKGLNREIENILFVGCDRQKSLENGLSPELPIARFLACKKHMEDNIKRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGQ1</accession>
    <name>A0A6S7IGQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Microspherule 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A088307</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009265">
        <property type="protein sequence ID" value="CAB4016807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGQ1"/>
    <dbReference type="OrthoDB" id="10262769at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031011">
        <property type="term" value="C:Ino80 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071339">
        <property type="term" value="C:MLL1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044545">
        <property type="term" value="C:NSL complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002151">
        <property type="term" value="F:G-quadruplex RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22687">
        <property type="entry name" value="FHA_MCRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037912">
        <property type="entry name" value="MCRS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025999">
        <property type="entry name" value="MCRS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13233">
        <property type="entry name" value="MICROSPHERULE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13233:SF0">
        <property type="entry name" value="MICROSPHERULE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13325">
        <property type="entry name" value="MCRS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SMAD/FHA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="207"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="261"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="457"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="215"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="615"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="615" mass="68427" checksum="013E0D5B1032B0B6" modified="2020-12-02" version="1" fragment="single">VNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQLPLCYYLGVNTKSAIALSQMKGVHFGKASGRSTPRRSSSRSIKRKKFDDELVESSLKNPGKTLGLPEVLEGKEKFKKFVSKPPGAIGPPLNKKQKKNKGNTTPLKDVGRWRPADDLTLITAVLQTNDLNAVRIGCKFSCRFTLSEVQDRWYALLYDPVVSRLASFGMKQLPADIVLQIQSSTLWGREEEALLAKTSATTTAAVEYFQHLLDENPMTFHPYRTAKSIMQHWLQMKHYQLLDDQTVLALGSATATFSDFEEQVKDSELTVPRDEILEHELSLADRRAKREIRQLEEEIPRWQAIVDSLNEAGTAPTEFDSQTLAVLRGRLVRYLMRSREITVGRSTKDNTVDVDLSLEGPACKVSRKQAVIRLKPDGEYYVVNEGRRPIFIDGKPVLTDVKAKLHHNSTFEICGLHFVFLINKDYSSERKDPENH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIY1</accession>
    <name>A0A6S7IIY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A087670</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009635">
        <property type="protein sequence ID" value="CAB4017636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIY1"/>
    <dbReference type="OrthoDB" id="118243at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4017636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="16070" checksum="CBF52234D7CF1CE8" modified="2020-12-02" version="1">MYKSRSLKEVETRYSATDREALAVRWACRRLRRYFLGAPKFRIVTDHRPLTYMFRKLCGELPPRVENFVMDVQEFEYEIVYRPGKTCIADYMSRHHVDRAGSSRVFKIEAAAESVVESGCCHALNEQGTVTVEDIRAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJ39</accession>
    <name>A0A6S7IJ39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075947</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010285">
        <property type="protein sequence ID" value="CAB4019074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJ39"/>
    <dbReference type="OrthoDB" id="5980793at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1940">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003582">
        <property type="entry name" value="ShKT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21724">
        <property type="entry name" value="SHKT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21724:SF109">
        <property type="entry name" value="SHKT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01549">
        <property type="entry name" value="ShK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00254">
        <property type="entry name" value="ShKT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51670">
        <property type="entry name" value="SHKT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20756" checksum="5A63405A012CE7EB" modified="2020-12-02" version="1">MKSFSITVLLASATLIMGGRLEWFGVSEFEDAGCVDKYPTKECKEHAAIEGYCDDHKEFMETRCAKSCGFCQPQVPLGPGIECKDKIEGCAEHAAIEDYCKYNEEFMIKYCRKTCGLCRQPNAPGKELFWETTPWGECKQGVQRRGVKCIHVYEGKDYQVDLKYCRDNLTDEAEPADKRDCVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IK84</accession>
    <name>A0A6S7IK84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">IS630 family transposase, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011087</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005495">
        <property type="protein sequence ID" value="CAB4006381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IK84"/>
    <dbReference type="OrthoDB" id="5950937at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047655">
        <property type="entry name" value="Transpos_IS630-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF033545">
        <property type="entry name" value="transpos_IS630"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46564">
        <property type="entry name" value="TRANSPOSASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46564:SF1">
        <property type="entry name" value="TRANSPOSASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tc1-like transposase DDE" evidence="1">
        <location>
            <begin position="146"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="37071" checksum="F597DAAD63AE2CB3" modified="2020-12-02" version="1">MPAPYSQDLRWRAIFLAEILDLELEQVSFYLQISQSTIKRYVRKFREIGNVNTAIIGRPYNCISMHPHEELVIMEMVQQYPEKTIAEILDKVYAETGSQYACSTLHYYLKRNGITRKKLTKIAQQRSEDARAEFRASTCLLPPEIFVFLDESGFDKRIMRTYGYNLCGQPAKIYRRHTHWGPRITAIPVICMEGLLDVGVYRGHVDGETFLAFVNNILAPCLLPFIGYNPRSIVILDNAAIHHTQEVIDAINATGALLIFLPAYSPDFMPCEELFAQTKSYIRQNDIAWQNCPDPELMVWESFLQCTDEEIRNYIHHAGYM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMD3</accession>
    <name>A0A6S7IMD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquitin-60S ribosomal L40</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A073898</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009883">
        <property type="protein sequence ID" value="CAB4018169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMD3"/>
    <dbReference type="OrthoDB" id="408003at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd17039">
        <property type="entry name" value="Ubl_ubiquitin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.60.30">
        <property type="entry name" value="sav2460 like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051324">
        <property type="entry name" value="Stress/Tellurium_Resist"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003325">
        <property type="entry name" value="TerD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000626">
        <property type="entry name" value="Ubiquitin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32097">
        <property type="entry name" value="CAMP-BINDING PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32097:SF17">
        <property type="entry name" value="CAMP-BINDING PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02342">
        <property type="entry name" value="TerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00240">
        <property type="entry name" value="ubiquitin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ubiquitin-like" evidence="1">
        <location>
            <begin position="98"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="TerD" evidence="2">
        <location>
            <begin position="182"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="333" mass="37598" checksum="75C533C041745C16" modified="2020-12-02" version="1">MICHQCGEDKLSDEFPHEHLTVECTEHPLLHCLRCVTASVRDHHKCSQCDVQVTEDNMQYKQYVKSLEFLFPTIATGDDVNTASQSLSPTDDESTSRIVITTFTGECTTIVYNPNQTILSVKDIVEEEFKISCYKQSLLYNDIELKPNSTIYLLVLLWAEPDELDVVFDFFWKYPHSGCNFLDASVLLYSGSQFVEVIDCNHTASQSCSAVQHSGDVMNHAKRLGHYSINVSIKSIPVHINKLVFTLSARNSPNISKYPNLSLKVFDANFPDKEFIINKISHASYLQAIIICCLTNKGSRWEIIDIKKMSAGNAKNYVPLKKSIVGLLRNGFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INS1</accession>
    <name>A0A6S7INS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046212</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010116">
        <property type="protein sequence ID" value="CAB4018669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INS1"/>
    <dbReference type="OrthoDB" id="6625098at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34920" checksum="F32A9036EE576763" modified="2020-12-02" version="1">MSRQFRNLKTRLFDHLQTTTHLEKQKEITDVETGKQEFESRNRKVGMRCARTSYLLYKTARPYSGYEQLVTLESYNGCDMGNINHSRKFPAQILPFIADETKARVKKFLCTPLVQTGFLPPVKVIADKDTKKHRTRQVVLLVTIVPDAAELIQYIYLDHPIVKKHTGKDVAASITNVLQNYIVAGQFEGGGFDGQYFHLGVPEYVNAHYEIDYSDTYYDWDVLHCCGLVDTRLRKLEQFQWLSNITNTVSSIFKLFNWGKGYEELVEACDRLKLAIQNPQFFCETRFANSVRKVYGNFLADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQ83</accession>
    <name>A0A6S7IQ83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Spatacsin-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066618</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011408">
        <property type="protein sequence ID" value="CAB4021385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2018754at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030425">
        <property type="term" value="C:dendrite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045202">
        <property type="term" value="C:synapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008088">
        <property type="term" value="P:axo-dendritic transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007409">
        <property type="term" value="P:axonogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007268">
        <property type="term" value="P:chemical synaptic transmission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048489">
        <property type="term" value="P:synaptic vesicle transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028103">
        <property type="entry name" value="Spatacsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13650">
        <property type="entry name" value="SPATACSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13650:SF0">
        <property type="entry name" value="SPATACSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1469"/>
            <end position="1533"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1487"/>
            <end position="1497"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1533" mass="173904" checksum="1DD5A4055B55B3F3" modified="2020-12-02" version="1" fragment="single">MAVPEDSVHTVKTKRLKTDININEIKSIKCSADNSCLLVARKDSTLHVLHVKTGETSFVSEQVKEFMWSTPGNTSTLNRSPTFAVLHHDGSVEVFDVQKKSVIKKQTEEKSLTHVGLLTIANIQGLLKGEEVSLKSFKIIDSQQVSSTDDDHVDHVTLLFGGYLIVVLSFGLVASSDLVRWCEIVKDISSVPFLLPQQAIADVSVAKEMLFILYQHGMIVVYNMINWTFYGWIDAFQSIEQHSKDGIGQPSPKRPTAKILDVDDTAFTLNICDDRNYVTVISVNKYFEFFPSNLESKDGVVKATERERPGRNQELEQNLCGDAFWRSEISAIARKLDGDSDKTTKKEIRQHLKTKETDLDHPFVETPWSIIISSPPWMNDFIVIDLYSSSDSFLLWLESSNTRETCDNHGVLCCWVEWRAEYLINVFLEKTFVASGGHSTKPLYLLTNNAIAVPIFDTTQNELVNKIITYQNVAMAEKLCYLNDWDHFAVPISALEAALKHGQLDTVAFYLKTKGKAFTTTAAESETVNPARALSPLSPSSSFTSKHLYMKPSHSEDLMEQIKAVVDILLQTITARSKRKHSVQFTSQLLQMSLDYVNGLMQDAVNYLDREMGSKVDRERVPHILTYLTAKTMELRAFQYGIPAFRGEGRECQDEGEIQDIIFEKWSGMDDKDVISDAILSCHIPLAQGYFLTKTESNTAHDGSLKYIIETGLRIVLEVLARKDIATATEMIRNMGEDVVQLVRNICLKTFDRPLRDYLIEQLQSWGELREEEISSVKYLATLESIYDNQSFESCQIRRSQQQEDLFDDLGLLRHSMEPRSPRRKIVPVKTGSIAQQYQASMISRVAGGYCEVLLDWIISWDTNTRERILLEMLSHDEKAFQNMHCMVSEKSLWQYLKAHCETTRIIEWIVNTAQADESSNLPPLTLETRSDLSECTAFVQEFILDELTRNGLFSSNLLQDFPRLLRHLCRTDTLFMKIHPLHEVAKTCGPSQEPGPEAVHSTKTFHQKLIKYCSENNFMNLLYYYLDFYRLCQTTDECEELLSDGVDNEVDMLLKFRLVGLYPSDPSVMSSMSFSNSKAIFRSTSFSIREMLDNKRPIMAIATCLYAPVAMAKILNPSTRSEDVWHLDERILRSSLSGYPRLSSALFPRSANQNLKENPDITLYELLQGNCSFEISGLFSWQSTNNLAINGGVSTDMPHFSHKALVERFGHKETLTYVYFLRHGRPSFAYASFMTKYQHRKYIPKTSVTKATKKTYQLAVTHFDNNRIVFSCVAFLELLSVDTTFLRIDVAAAKRCLHPGNKGELQCSTIEELKNIVVAKLLKCARDKQQKPKVLVRILESSTKSIISKEGLERTSREASQYWSLPVLFCRSHNMTLTPAFLIDCAKADKWLTFLCHAQAAQFPKNQVLSIAQHHFDSNTLKEHLHQALVNIVTVDIKDGGTPKRKGKFPPTRRDIRSQYLSRVIGVSQSPGKSEMMSKTPERPEPQAAAGEPAEASTELEFELDSELKLDEGEGLEDEHELEMKSGVTATN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISX7</accession>
    <name>A0A6S7ISX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A084425</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ESS2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011131">
        <property type="protein sequence ID" value="CAB4020796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISX7"/>
    <dbReference type="OrthoDB" id="19679at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071013">
        <property type="term" value="C:catalytic step 2 spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019148">
        <property type="entry name" value="Nuclear_protein_DGCR14_ESS-2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12940">
        <property type="entry name" value="ES-2 PROTEIN - RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12940:SF0">
        <property type="entry name" value="SPLICING FACTOR ESS-2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09751">
        <property type="entry name" value="Es2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="80"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="365"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="417"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="111"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="122"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="423"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="452"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4020796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="472" mass="52434" checksum="B5C4D4F716D613BB" modified="2020-12-02" version="1">MALVKSGEKDLEIAVKNDAKPPKKQEILDEDTYIKSIENIIERDFFPEVTKLKAQNDYLEAINTQDVEKLRALSSQYNILHTPAGAPPPTPASFERPSTGKLWEPADDEQPSGTPGPNFEQTRGDSSKQQENNKEQTEKSTSLDKFLAKNTSEDNASFEIIMENTLQKNKEKHAWLYEKEKEHAMLAQQRLALPENKDGGQLKLADRPANLDNWEYTNKNALMYVPECSTLTTEEVIARAKLQEREIKHTNTRLTEDVFKEKTTEDSMNRAAESQVMGNIGGKIGVDGNIIGGNETPNVNGFRFVATPSPAPGVDASPLMTWGTIEGTPFRLDAGDVTVDSTPGPTFKIPEPKQREVLAHKLAEKASKRHREERRQALAAAAFGKSPRNKNTSERLSSMSPAAQRLASERLGIRLGTDKALRSSYSPSPQRIPQGTPDRSRTPSRSPYSTPGNNRTPRTPSLTDNLLNLPKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXM2</accession>
    <name>A0A6S7IXM2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013352</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011991">
        <property type="protein sequence ID" value="CAB4022463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXM2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030020">
        <property type="term" value="F:extracellular matrix structural constituent conferring tensile strength"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030198">
        <property type="term" value="P:extracellular matrix organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050149">
        <property type="entry name" value="Collagen_superfamily"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24023">
        <property type="entry name" value="COLLAGEN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24023:SF1082">
        <property type="entry name" value="COLLAGEN TRIPLE HELIX REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="112"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="14491" checksum="9AA92DAFC3D19755" modified="2020-12-02" version="1" fragment="single">GTGPPEDGDPGDPGPQGSNGPPGPPGPPGLPGNPGGKGPNGYKGPRGQSGPPGPPAPVTGPDGGGPGGADSAKGPPGGPGGSNPIPGPPGPPGRYGRRGPPGDVGGKGDQGLAGLQGPKGYPGSVGPPGEPGVNGNPGDPGEPGGRGEEGSGGPQGPPVST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J351</accession>
    <name>A0A6S7J351_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012927">
        <property type="protein sequence ID" value="CAB4024261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J351"/>
    <dbReference type="OrthoDB" id="5954275at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="32537" checksum="EA53920FC7452068" modified="2020-12-02" version="1">MNAGNYEVECFVHIFNSCTQNNYTIASIFEHLFRSIKAEYPLIHKAYIRSDNAGCYHNGPLLLCLPEIGKTTGITVARYDFSERQSGKDICDRKIAPMKAHIRIFVNENHDVVSAEDMKVALEYHGGLKRCRAAVVEVDSSQDLYEGNKIPDISLLYNFQYETSGIRVWKAYETGKGKLLTYKDHQFQPQNVASLKVVKPFGPRQKERGAIGKASKTAQAEIFSCSESTCILTFRSEREIQAHMDTAKHIRELESVSLYDEIRRKWAERVTGISTVAKPTPSVFTQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8M4</accession>
    <name>A0A6S7J8M4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048522</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014195">
        <property type="protein sequence ID" value="CAB4026431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8M4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14212" checksum="3817DE1E4A64509B" modified="2020-12-02" version="1">MSITKVSDFTKDSFCFEDAVVNSYGSKIIDLTACDQGPILLKVTDCNTPTLYPGIDDETEMYEPKGNDPIDHRKYQNKRFYVDAIVRIKGIFMSGNTTSIQVKLYEANILKEKPRIPRKRLLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAG0</accession>
    <name>A0A6S7JAG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053256</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014892">
        <property type="protein sequence ID" value="CAB4027588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAG0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="124"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="150"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="33624" checksum="518C0BC7EA1B19FE" modified="2020-12-02" version="1" fragment="single">MSSHHKRKRSHSRDSTHRSSKSKKSSSSTEQSDHAKIDEEMLLQLRAISSTVSDLKSNMEVCNRRISQLEDVFTSENMTHSHSEKQPEPCRDGDTLSILAGNDNPENFEDLAIEPPEQAIEPSEQAIKPPNSAVQLNTSDDICGDRIDPSKQQSVELSNASEGQPGLYDPEAVTTSWSPSQEFKDFLEKNFRRKLSFDHICDILEEQAIPQVDSLVAPTLDPPMLSHVSYQNKKFVQERDKELAVVQRAMLNITGPLSTLHDRLENNLPVSPTELKLLVEQSLCLVGSANSQLSVLRRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JB45</accession>
    <name>A0A6S7JB45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018744</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008271">
        <property type="protein sequence ID" value="CAB4014362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JB45"/>
    <dbReference type="OrthoDB" id="2344127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="214" mass="25385" checksum="A187162450F5D0D2" modified="2020-12-02" version="1" fragment="single">MTKSVNLLLEEFRKRFGKYPEVAQFDEGKEFYNVGVRDLLQKHDVRYFSTNSDRKAAIVERFNRTLKTMMWKYFYSKGTYNWVDALSELTNNCNHTKHSSILTRPADVSKSNKNQVWITLYGHGLGEFPLPNKFRVDDTVRITKYKNIFTKGYEANFTEEIFKVVKVFRGDPNMCEIESHDGEPIIGKFYEEELSAEDKKDDVYRMEKILRRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCW3</accession>
    <name>A0A6S7JCW3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053899</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014432">
        <property type="protein sequence ID" value="CAB4026830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCW3"/>
    <dbReference type="OrthoDB" id="10035704at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="23893" checksum="7390F36641AD57C6" modified="2020-12-02" version="1">MPVGRPNPVFDEHTDFDCDEWFATNEEKNESDLKNLTWILTRMLADEKIIPGWAAFNEVTCQINHSIAEAIGQHMENAGLLDVWVESGLFACSSTDQIMEGKSYYRAVRGHTLAYYSLNRIYWNYFVKWVGTQEHLKTPELRMKIGEIVQEFSKGDIDSKIERCLLEIENEDEDHLISTRKDQRFWTGRRRTGWWYYGRRRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JNN7</accession>
    <name>A0A6S7JNN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009803">
        <property type="protein sequence ID" value="CAB4017991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JNN7"/>
    <dbReference type="OrthoDB" id="5986122at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47526">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47526:SF3">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="34127" checksum="1B989F01D1F62B9B" modified="2020-12-02" version="1" fragment="single">MSGEKNTNFKAMSVAAIKKYLQERGVSVNGYLKPGLVELAVAVEKMMLPLDPNFERVNDTYTMKQKLNIHDIQIGDPFTMKTINDFIDSPPFGLYDIFNHLIYHATEYDKQGLAAYKSFEDYRLFQDGYVRSLETLTLKEAGVHVYIGQVQPTMRAKTDDGKDCYSLWFILEGRGANRGSVLDAFCKCKGARDGGCKHISAAMYSLEALLNPDGDKSVTSGPCLWMPKPQSCSEPCSVDQLLISKSKPPASKERKRTYTWLQNIDFDPRNPKHRKVSSIKERVLLTKRLSAVEDSKCNINLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSQ2</accession>
    <name>A0A6S7JSQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Probable Dol-P-Man:Man(7) c(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088451</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021396">
        <property type="protein sequence ID" value="CAB4035816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSQ2"/>
    <dbReference type="OrthoDB" id="19039at2759"/>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="5"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10114" checksum="EA0D3190271C0D27" modified="2020-12-02" version="1" fragment="single">MDVSLVLDVAMLFVLFANILVCPFTKVEESFNLQATHDVLYHGLNISMYDHIQFPGVVPRTFIGPLVIAVLSSPLVAVLNLAKVGKNYAQII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JUX6</accession>
    <name>A0A6S7JUX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pregnancy zone</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089724</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019672">
        <property type="protein sequence ID" value="CAB4033924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JUX6"/>
    <dbReference type="OrthoDB" id="9998011at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050473">
        <property type="entry name" value="A2M/Complement_sys"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011626">
        <property type="entry name" value="Alpha-macroglobulin_TED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11412">
        <property type="entry name" value="MACROGLOBULIN / COMPLEMENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11412:SF171">
        <property type="entry name" value="PREGNANCY ZONE PROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07678">
        <property type="entry name" value="TED_complement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="Terpenoid cyclases/Protein prenyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-macroglobulin-like TED" evidence="1">
        <location>
            <begin position="14"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="28537" checksum="CE11182DDD71D975" modified="2020-12-02" version="1" fragment="single">VSKLFKYFHYEDLFHTGYQRELTYKRRSGSYSIFGKSDSEGSMMLTAFVVRSFARARKYVFVDEDEIKHSIQWFRRKQKPSGCFPKYGKVFDKSLQGGLNSELTITAYVTIALLEAGFNKKTRMVSKALSCVTDNLTHIQDSYTTSLVTYTLVLADHPKSGLMISRLKNKAVSSEDGLIFWSARNDKLVATEEPTDYFAEKLRPADVEMTGYALMSYLKRNEQPKDIMKIVKWLSKQRNYYGGFSSTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYF5</accession>
    <name>A0A6S7JYF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051817</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022528">
        <property type="protein sequence ID" value="CAB4036897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYF5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00629">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="8464" checksum="869C8A33770A1473" modified="2020-12-02" version="1" fragment="single">MTSWFSYKWIPYYSTAIRVNFQYKVTGDNNTLSISVRTVSGDRTLLWRIHGNHGSRWKNGTITYWPTQKFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2C7</accession>
    <name>A0A6S7K2C7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008790">
        <property type="protein sequence ID" value="CAB4015638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2C7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="10652" checksum="91AEB0B7F03DAD00" modified="2020-12-02" version="1" fragment="single">TPDDTSEQTQENEDGVQTSKTDSETVSNPSKELVDKLNVDLVKALKRDFKIVGVIGGDKQWDSLSFVSLSRQIETGIKSGYKESVIVAAVIRAVSPNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEF5</accession>
    <name>A0A6S7KEF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058142</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031783">
        <property type="protein sequence ID" value="CAB4043217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEF5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12212" checksum="A48693057C9844B1" modified="2020-12-02" version="1" fragment="single">MVTDLSHNLNDQELNLLAKGQKFGLMDGVDNNTIDDFQASFYRLANSLRRSEYQERTQATQQTTIETYPKSCYIRKPESSTDLEQTLKKIHNDYQRIVKSIQPKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLK9</accession>
    <name>A0A6S7KLK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Contactin-4 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062014</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033195">
        <property type="protein sequence ID" value="CAB4043794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLK9"/>
    <dbReference type="OrthoDB" id="5985519at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44170:SF6">
        <property type="entry name" value="CONTACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44170">
        <property type="entry name" value="PROTEIN SIDEKICK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4043794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="16941" checksum="88AF9CDA4E916704" modified="2020-12-02" version="1">MLIINRDNFCPNEQTLSSECITPGTEKIMFYAFRPTPEYSWKRIDVYDKEHAVENGVDGITFDDRDPRLLVIKSASKDHAGQYFCTATIGDKNDTVEGSLTFEVQPTWIGKSIEAVSPSVYSNHSWTCNATGFPTPTYEWYKNGVKLAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLS6</accession>
    <name>A0A6S7KLS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011445">
        <property type="protein sequence ID" value="CAB4021458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLS6"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="21058" checksum="532854FD08586D7F" modified="2020-12-02" version="1">MLSELPYYNLTDEQFSKEIGAWVYNSIDNLYARSKDLFKDIVESLDKANDCNENLIYDYIESNENLIYDSIESKYHTIKQFGNRFSNVKRKGFSILHCNIRSLPKNLSLLNDVLLMVKELLNIIAITETRLAEDSHHNIRIPGYIFLGVNSKTSAGGVGFYISENINFTRRNDLDLALTEADM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KM60</accession>
    <name>A0A6S7KM60_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Fibrinogen C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052432</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032015">
        <property type="protein sequence ID" value="CAB4043301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KM60"/>
    <dbReference type="OrthoDB" id="26719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fibrinogen C-terminal" evidence="1">
        <location>
            <begin position="29"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24156" checksum="EDA66063D825836D" modified="2020-12-02" version="1" fragment="single">PVSVTKNAKSAFNIDYSTTCSMLKSDEPETPSGYYMIQPNENEAPFTVFCDMTDKNGTGVTVVSHDSEESTHVNGYEGKGEYKKSITYNGLTMEQIINVINASCYCEQFIKWYCKNAGLYLQYSAPDSWWVSRQGYKMTYWGGAIPGSKKCACGMTNSCLDTTRSCNCDGGSSQWVEDSGFLVDKEYLPVSELRFGDTGYYTEEGYHTLGKLLCWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMJ3</accession>
    <name>A0A6S7KMJ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015402">
        <property type="protein sequence ID" value="CAB4028322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMJ3"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="31465" checksum="77BD660868E8CF2C" modified="2020-12-02" version="1" fragment="single">MTLAESTFKSSSDKADALNKFFASVFLPRPQNPCFPPSNTVPVTPTEFSDVSVEEVCRLLNNLSTSKATGPDGISARLLKECSEVLAPSLTALFNKSIALGKVPADWKYANIVPVPKNNKTHIVSNYRPISLLSLVSKALEHVVHNRVLYIVKPLLHDQQHGFRSGKSCITQLLDVVYNIGKALDCGKEMDMIYLDFSKAFDSVPHDKLIFKLSQFGITGPLLDWFSDYLSARKQRVVVDGFSSSYLDVTSGVPQGSIVGPLLFLIYVNDLPDAAKHSKVPMFADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KNN3</accession>
    <name>A0A6S7KNN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Defline double C2 domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032768">
        <property type="protein sequence ID" value="CAB4043621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KNN3"/>
    <dbReference type="OrthoDB" id="419768at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="13298" checksum="0E8942B78170356E" modified="2020-12-02" version="1" fragment="single">IVNSCVDPEYEETFQFDVSVDDLSHRTIIMHIYRVTDGDEKHIGNVNFNLKRYSSGQRSRNWYRVVDMRNTARERTRLGESVVAQEFREAMFAHTLYHCPSFMFQDDKTGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQR8</accession>
    <name>A0A6S7KQR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isoaspartyl peptidase L-asparaginase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Ntn-hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038405">
        <property type="protein sequence ID" value="CAB4045254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQR8"/>
    <dbReference type="OrthoDB" id="2262349at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033345">
        <property type="term" value="P:L-asparagine catabolic process via L-aspartate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.30">
        <property type="entry name" value="(Glycosyl)asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000246">
        <property type="entry name" value="Peptidase_T2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188:SF43">
        <property type="entry name" value="ASPARAGINASE (EUROFUNG)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188">
        <property type="entry name" value="L-ASPARAGINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01112">
        <property type="entry name" value="Asparaginase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="16787" checksum="7C0EDEB0EB54F36A" modified="2020-12-02" version="1" fragment="single">MAVSQFSNPVSLARRVMEETPHCALNIEGCLAFAKKIGYPILKDPMELVTEQAKMKGNAFNKYNNAVHSHIEGRSTEEYHDTVGAVAMDATGCIACATSTGGIPAKMQGRIGDTPLIGCGGYANEYGGCSTTGHGESLMKITLAREAVYNIEKGNNAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LBK9</accession>
    <name>A0A6S7LBK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Fibrillin-2 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A042815</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016478">
        <property type="protein sequence ID" value="CAB4029889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LBK9"/>
    <dbReference type="OrthoDB" id="5951565at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005112">
        <property type="term" value="F:Notch binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007219">
        <property type="term" value="P:Notch signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000653">
        <property type="entry name" value="Putative Fibrillin-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12916">
        <property type="entry name" value="CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12916:SF9">
        <property type="entry name" value="NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="177"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4029889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="20500" checksum="A746531C6B6EF990" modified="2020-12-02" version="1" fragment="single">MFYIDIDECMASTENCHVKATCTNTIGSFTCECIAGYEWNGTHCVETPPESDTETTVFDPSGNQATIPIEETVPFAVVIVIAEPFVPELRNRRSRAFGNLRRRFLGSVVADIEVLYNSTEPIPTAEGVQSPIAEARDNGSAIFNISSLQVEREGCPNAPCLNGGNCSINGTSFSCSCPVRFTGDQCQIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LBV5</accession>
    <name>A0A6S7LBV5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077153</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016540">
        <property type="protein sequence ID" value="CAB4029989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LBV5"/>
    <dbReference type="OrthoDB" id="5983751at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018134">
        <property type="entry name" value="LAMP_CS"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00310">
        <property type="entry name" value="LAMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="496" mass="56546" checksum="0C2C717EAF427B12" modified="2020-12-02" version="1" fragment="single">MILEELVGSFVALVSSLIIQTPPMSRENLQREYTLITEGSQNEVYDDLIYCEYEQGAPMEVPSYEEDLSVLLQDDQQRRRNFCESFIRSSKANVGLLMAVVFVLGLLIVGLVYVDLNTTNSCVAWIHHNFSVPSNVRIIRIAGMCAALVPLFAWFPGCLAMLWGFKAFKKDFLMCLICQLVALTLDCVYTIVFLDKKTAAANVQYRLPGDIIFVISIVCCGILVARKFKKVNLETSCSVYRIFFILSFAFLGSCLLAYIYVYVIITYFTKTEDRIKKAIIAALTPGMTIPVTAIAKYLVLRKSAEIVTPDRAFVLCYFIRGGSIVLYRTMQSGFQSIWLFIGLSLLHGVSNVLSKATLSIRIKMWKFFVACYNKTCCGPRLEVQPLNTPRIRRFNADLEIQNILFEYSTVILSQAYLACYLVTSFDVPPWQVINGSLIRIAISLAIDFVFNLISVFIQIHFYDIPMRKVWLKFWRRHVIANAFMIIIFISYFDESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LFZ8</accession>
    <name>A0A6S7LFZ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PI-PLC X domain-containing At5g67130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063379</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017656">
        <property type="protein sequence ID" value="CAB4031469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LFZ8"/>
    <dbReference type="OrthoDB" id="5945141at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051057">
        <property type="entry name" value="PI-PLC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13593">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13593:SF113">
        <property type="entry name" value="SI:DKEY-266F7.9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26178">
        <property type="entry name" value="PI-PLC_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50007">
        <property type="entry name" value="PIPLC_X_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="36629" checksum="A559B718048B0B20" modified="2020-12-02" version="1">MGIGCARSLSCSLCGSLPATCQMAQLPAFSKQDLQKPYNKVAFLVTHNSYSYGIDFGIWAHNQRFSVARQLNDGVRGLMLDLYVGWNDADVRLCHGSCIWSGSTDLLFTLIEIREFLERNTHEVVTIIFEDYLENPRILAKVFDEADISKFVLTSDYWGEVEDWPTLSEMISLGRRLVVFNNVGLTEFPYSTRNMWNFMIESRYGSVSKNPNECKERKESKNHLGERRLLLVNWFTTIPNGLSPCLNDFDHLKRKLTTCYRKFGKWANFLAVDFYSKGSNGGAFKTVQWLNEKLTGSAKSSNLEMFLDFLEDEMREIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LJD9</accession>
    <name>A0A6S7LJD9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein YIF1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A032751</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Has a role in transport between endoplasmic reticulum and Golgi.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Endoplasmic reticulum membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Golgi apparatus membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the YIF1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018907">
        <property type="protein sequence ID" value="CAB4033039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LJD9"/>
    <dbReference type="OrthoDB" id="337750at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030134">
        <property type="term" value="C:COPII-coated ER to Golgi transport vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005793">
        <property type="term" value="C:endoplasmic reticulum-Golgi intermediate compartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006888">
        <property type="term" value="P:endoplasmic reticulum to Golgi vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005578">
        <property type="entry name" value="Yif1_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14083">
        <property type="entry name" value="YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14083:SF0">
        <property type="entry name" value="YIP1D-INTERACTING FACTOR 1, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03878">
        <property type="entry name" value="YIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="7 9" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="81"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="112"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="212"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU368073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4033039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27513" checksum="378C83BDEF1F646D" modified="2020-12-02" version="1">MANMAFQYGTSLASQGKDYVDKNIDKFVSTSKLKYYFAVDTSYVGRKLALLLFPFSHQNWSIKYNKAEPIAPRYEINAPDMYIPAMSFVTYILVAGLVMGTQDRFSPEQLGITATSAFLWSFVEVVAILFSFYICSVMAEIKALDLVAFCGYKYVGIILCLLAGLVFHSTGYYAVLFWMSLTTGFFLVRTLRLIILPEADADSIGRASKRRIYLLLFIALLQPVLMFILTRHLKPMDVIKKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQZ5</accession>
    <name>A0A6S7LQZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027142</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028191">
        <property type="protein sequence ID" value="CAB4041362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQZ5"/>
    <dbReference type="OrthoDB" id="2162143at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035869">
        <property type="term" value="C:ciliary transition zone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905515">
        <property type="term" value="P:non-motile cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904491">
        <property type="term" value="P:protein localization to ciliary transition zone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028928">
        <property type="entry name" value="CC2D2AN-C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052434">
        <property type="entry name" value="Tectonic-like_complex_comp"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20837">
        <property type="entry name" value="CENTROSOMAL PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20837:SF0">
        <property type="entry name" value="COILED-COIL AND C2 DOMAIN-CONTAINING PROTEIN 2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15625">
        <property type="entry name" value="CC2D2AN-C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="33953" checksum="4E551EDCEC8E5BEC" modified="2020-12-02" version="1" fragment="single">MKEYKVHIKEWKKRKKLRKRRATDEGNPEQSELVDDVEEAAPQRPVEFNEEEEFQLIVENAEKARRKPGEPILTPELQSSANLTPVEQCPRGEQQRKKDVQRWQTFVKVMFNDKEVSRTLTKSLLSDFTIHFGEIHPVKILQWPESIKLQVHESSGLQNKLLTEVFIPVPEASKVSGMQTDLDAVEFSSNAEVVYQHDGVGSGLAVSMRVNNEGASVPAQTYLTSGKIYCSSSWGLDFEGIPLVPPQTSTTQPTPYGNMMKYDALASLGAAGMMDIHALAQWISESNLDPNDPANADIMSLVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTE3</accession>
    <name>A0A6S7LTE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030132">
        <property type="protein sequence ID" value="CAB4042449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTE3"/>
    <dbReference type="OrthoDB" id="9908684at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000002">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="293" mass="32257" checksum="F92C2AB975569EA5" modified="2020-12-02" version="1" fragment="single">MKVQSNGVVITEAKSRVVSPNEGSKTNAVLVQSQLKGVNKVILSEGVAIPARSEMVIEGKIQAKDISQVDMISASQADSVRHLQGLHVAHLVVTPVGKTVPVRIANTTTEFCPILEQEAVANNKFPVNCNAVQADNLGQKIDSRLDAGLSNSEKQQVKQVLGEFKELFSDTIGQTNIAHHKIDTGDNPPIRQRARRMPYAFREESNKQIEDMLGKGIISPNTSPWASPIVLVRKKSGELRFCIDYHRLNQITRNDAHPLPRVDDLLDSVGNAKYFTTLGLKSGYWQIPVHPDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LU48</accession>
    <name>A0A6S7LU48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-type tyrosine- phosphatase S isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046843</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032705">
        <property type="protein sequence ID" value="CAB4043589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LU48"/>
    <dbReference type="OrthoDB" id="5988507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="10060" checksum="D5E434CC2091A22C" modified="2020-12-02" version="1" fragment="single">PSSGATITGVTALNSTSLKVTWEAVPSTNGPITGYTVCYSLNPPVNCSNNNQKTVGKDTLNTTIMGLNVFTRYYVAVKASTAAGNGSLGGEVEGTTGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D633</accession>
    <name>A0A7D9D633_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000271</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000068">
        <property type="protein sequence ID" value="CAB3977753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D633"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="19201" checksum="A1AA93EE1AEFA4B7" modified="2020-12-02" version="1">MKQLLLEYNYSHDQLKEETKRSFQELNLDLINLDHVESEVTAILLSIKRHTIKMLLTLFKRSKEEKAILSGDIKQLFYYYRNDESNVSNRINMISSNDVLNRYESGSLALLKAQQKILQQCVLHIHDSFRNLVELPDVNYSFKADTGEVMSDNESVHTRSFKET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D874</accession>
    <name>A0A7D9D874_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Choline dehydrogenase, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A076238</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000137">
        <property type="protein sequence ID" value="CAB3978736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D874"/>
    <dbReference type="OrthoDB" id="269227at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008812">
        <property type="term" value="F:choline dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.560.10">
        <property type="entry name" value="Glucose Oxidase, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002550">
        <property type="entry name" value="PRK02106.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552:SF147">
        <property type="entry name" value="CHOLINE DEHYDROGENASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54373">
        <property type="entry name" value="FAD-linked reductases, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3978736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="827" mass="93235" checksum="58A44FED2A9D954A" modified="2020-12-02" version="1">MSSQFQASTATNRRLVYSPDCNRSSEQKCAFPPSGMTIQKLNKENNVKAPTKVKNGRRFQKLSYKSIAKAQDKHCCRRKCLQGGKTGLSKGDIMACREAFWKLDENKQRNYILTFFLTNAIKSSGHQNFIYLVAGKEVCNSAWIESHGMSRWRYFSLKNDFENGRNTSDTAKGLFRMKSNRSMDAELWFENYRDTLADKMPDSWYYHLPSCHTKKTVYTTYVEETNNNGIYKPLSNTQFLRMWREKFKTVVIPKTKQQCFGRFDRERKLWFSANTLLKYTTDFEYVIVGAGSAGCVLANRLSEDGSNRVAVLEAGPKDNTWTIEMPAALTYNLSDDKYNWFYHTVPQKHLNNREIYCPRGRVWGGSSSLNAMVYIRGHAFDYDRWQVEGCDGWSYADCLPYFKKAQNHCLGENEYRGGDGPLHVSQGNLENPLFQAFIDAAVQAGYDYTPDMNGFQQAGFGPMDMTIHKGKRWNTASAYLKPALCRTNLVVFTETSTRKLDIENNRVVGVECHSAGRNVANIRATKEVILASGAINSPQLLMLSGIGNGDDLKELGIPVLLHLPGVGYNLQDHLEVYVQYECTQPITLYTAQKLWNMIPIGVRWFAFQTGLASSSHLEAGGFTSTRDDIPHPDVQFHFLPSLVIDHGRIPPDKEGFQAHVGTMRAFSRGYMKLNPNNPYHDPIIQPNYFEHPQDIIDLREAVKIARKVFAQKALEPFRGAEIAPGADVTSDSAIDEFLRAKADTEYHPCGTCKMGSENDPMAVVNPSGVVFGMEGLRVIDSSIMPSIVSGNLNAPTIMMAEKLSDVVLGKQSLPKSNAPVYENVKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9R8</accession>
    <name>A0A7D9D9R8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A036748</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000214">
        <property type="protein sequence ID" value="CAB3979619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9R8"/>
    <dbReference type="OrthoDB" id="10007484at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="2">
        <location>
            <begin position="105"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="392"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="717" mass="81838" checksum="D809C1FC1D5A3DC0" modified="2020-12-02" version="1">MWYAQIVCYNVYVPLLLRLSNDVEENPGPTDVNEIVDPTFTVCADFNQGPLYICSCCDQLWYKHSVCPADRLRLSNTNSIQYLQGIKSVDNIEWLCLTCNNHLKKNKLPPCAIANGFKFPTKPEFFDLNELECRLIAPRLAFQKIMQAPRGGQLKIIGNVVNVPADVCNTVNMLPRLAQDTGTIKVQLKRRLQYKSSALSLNVRPNKVMQAAAWLVNTSDLYREQGISFDQNWITYFDPTISNEECGNENTNSLVDQTTLAAPEDEWSEDEAETPAGVTDTMLTAADFLDDNERQHIYNVAPGEGQKRPDEKQRLKTVYYSEICKSELRRSDRRAAMCIENIFFKAKKLQMKLLLGQSQVALRKCKVGNRTITAGQLKTPEGLANLISHDEGKIKDWFYRVEYQQRGSPHIHMLIWLESSPVFGVDKDEDVTAFIDKIITCSKPSVIRNTKDLWKDIKNKLNDLKEGKVITFDQLLKELNVSEREYILAVRSSLNCPTIFLKRSPNELRINNYNPACLHAWRANMDIQFVLDVYACAMYIVSYISKAQKGMSELLRKACAEAKEGNSSIKQQVRDIGNKFLNSVEISAQEAVYIILQLPMRKSSRNVVFINTSLSCDRVELLKPLSEIERMSDESEEIHSGGLFKRYVERPDCLQNVTLADWAAWYDSCGQSKYKKTLKNSDVDNLPLEDEDENNDDELCHEKIESCITSKKSIKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGE3</accession>
    <name>A0A7D9DGE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Myosin regulatory light polypeptide 9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A069740</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000702">
        <property type="protein sequence ID" value="CAB3984150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGE3"/>
    <dbReference type="OrthoDB" id="429467at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000007">
        <property type="entry name" value="Putative myosin regulatory light chain sqh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050403">
        <property type="entry name" value="Myosin_RLC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23049">
        <property type="entry name" value="MYOSIN REGULATORY LIGHT CHAIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13405">
        <property type="entry name" value="EF-hand_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3984150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="23239" checksum="97D5D2DD72B0A3E8" modified="2020-12-02" version="1">MFLVEDKPRIVVLKYLAFHSMASMRGKDRRRKGWRSSKGTSLIPQTKQRTTSNVFSMFDQTQIHELKEVFNFIDQNCDGFIDKDDLYETMQAFGEMGVTEEYLEQMINESPSYINLTMFLTLFGSKLNGTDPDEIFESAFRCLDADGTGRIHVGMLKRLLTETGDKFTEDEIASMLQNVKLDDDGSFDYVDFIKVIKSGRTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIR5</accession>
    <name>A0A7D9DIR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000977">
        <property type="protein sequence ID" value="CAB3986192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIR5"/>
    <dbReference type="OrthoDB" id="5981480at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12993" checksum="04CF1C6EBD972FC4" modified="2020-12-02" version="1">MPRFSECWRCGNTVGVGIICNLCEVAKYCSEKCQRNDIFRHEAECIPGSILKTCTTCRKSGRDLKACTGCYRAFYCDGNCQRRNWERHKIDCREDKEALEATTQLISAQCYMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DL07</accession>
    <name>A0A7D9DL07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022228</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001232">
        <property type="protein sequence ID" value="CAB3987775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DL07"/>
    <dbReference type="OrthoDB" id="6782675at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27406" checksum="BA5B02488FE5EA09" modified="2020-12-02" version="1" fragment="single">SQKNAERIKEIVETRHVHKLAKLGATNSSDYIDKGRWVVNLSGHQLTPAETRVLRYGFNFAPAPKATPVPKIVASIESGIRDLPESNKESVRATVTNILKYSKPPTTCNLSRQQKLALKNLREDITIIPADKGKAIVVMDKDDYTSISDLLSDKETYLKITDRRRRPVSKVENSPTLRRHPQNMILINLKCINTFTCISSPLMAHQQDSTDCLKSTNLPYHFATLQVALISRHTNSRNTLSKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DQJ0</accession>
    <name>A0A7D9DQJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085268</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001670">
        <property type="protein sequence ID" value="CAB3990492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DQJ0"/>
    <dbReference type="OrthoDB" id="10072556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="10842" checksum="7AE561822E0BEDEA" modified="2020-12-02" version="1">MAGDDGTSITTLDEGTSIRAGDEGSSIVAGDEGSSITTWDEGTSIRAGDEGTMAGNEGSSIVAGDEGSSITTWDEGTSIRAGDEGTMAGDEGCSIVAGDEGTSIMAGDEGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DW64</accession>
    <name>A0A7D9DW64_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">Alpha-mannosidase</fullName>
            <ecNumber evidence="10">3.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A008926</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides.</text>
            <dbReference type="EC" id="3.2.1.24"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the glycosyl hydrolase 38 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.-" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020002685">
        <property type="protein sequence ID" value="CAB3995555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DW64"/>
    <dbReference type="OrthoDB" id="2016903at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005764">
        <property type="term" value="C:lysosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004559">
        <property type="term" value="F:alpha-mannosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006013">
        <property type="term" value="P:mannose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10810">
        <property type="entry name" value="GH38N_AMII_LAM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1270.50:FF:000002">
        <property type="entry name" value="Alpha-mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1270.50:FF:000003">
        <property type="entry name" value="Alpha-mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.70.98.30:FF:000003">
        <property type="entry name" value="Alpha-mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.110.10:FF:000001">
        <property type="entry name" value="Alpha-mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.110.10">
        <property type="entry name" value="Glycoside hydrolase 38, N terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.50">
        <property type="entry name" value="Glycoside hydrolase family 38, central domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="entry name" value="Golgi alpha-mannosidase II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.30">
        <property type="entry name" value="Golgi alpha-mannosidase II, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041147">
        <property type="entry name" value="GH38_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011682">
        <property type="entry name" value="Glyco_hydro_38_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015341">
        <property type="entry name" value="Glyco_hydro_38_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037094">
        <property type="entry name" value="Glyco_hydro_38_cen_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000602">
        <property type="entry name" value="Glyco_hydro_38_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027291">
        <property type="entry name" value="Glyco_hydro_38_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028995">
        <property type="entry name" value="Glyco_hydro_57/38_cen_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050843">
        <property type="entry name" value="Glycosyl_Hydrlase_38"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11607">
        <property type="entry name" value="ALPHA-MANNOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11607:SF3">
        <property type="entry name" value="LYSOSOMAL ALPHA-MANNOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09261">
        <property type="entry name" value="Alpha-mann_mid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17677">
        <property type="entry name" value="Glyco_hydro38C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07748">
        <property type="entry name" value="Glyco_hydro_38C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01074">
        <property type="entry name" value="Glyco_hydro_38N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00872">
        <property type="entry name" value="Alpha-mann_mid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88688">
        <property type="entry name" value="Families 57/38 glycoside transferase middle domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="Galactose mutarotase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="Glycoside hydrolase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9 10" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3995555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1038" mass="118642" checksum="4D3F976D682D2CB8" modified="2020-12-02" version="1">MEIKFTTTKTSWSDKFDIIMIVYINSAPGLLNGILLIFLASISLIPGNAFVCHSEASRNANEVLQIHIVPHTHDDVGWLKTVDQYYYGANNSIQRAGVQYILDSVIPALEANPMRRFIYVEMAFFKRWWVEQSPTMQARVKALVERGQLEFVNGGWCMNDEGTTHYNAIIDQMTLGLQFINENFGSKARPRVAWHIDTFGHSAEQASLFAQMSFEGFFFARIHYADMEKRTREQRMELMWRGSKSLGKSSEIFTGVLYHHYSPPTGFCFDILCDDPPIQDDSRLFDKNVKERVELFINETCEHALHYKSRHIMLTMGDDFNYQNAEMWFKNLDKLINYVNKDGRVNVFYSTPSNYVDAVKGIELAIKTDDFFPYADCPHCYWTGYFTSRPALKGYVRRNNNLLQVCKQLEVLGNLEDSEHSSQTLRDAMAVAQHHDAVTGTEKQHVAYDYAKRLAMGAEQCKMVISSALTKITRRENSEADIQYTFCDYLNISVCRGTETRKSFTITVYNPVARIVDTIIRVPVFSKHVQVFGVDSKPVRFAIQPVTEVTRFVRGTLGDAPYVLVFPAVSVPPLGLAMYQVNVTPKAGKSIGNTRSSSKKRELKANSVDYIIENKHLRLTFSNKNGRLVEIENLESQIKQSVDQQFFWYNSSVGNNVSDQASNAYNFRPNSSTHFNVSVDNRAKITVFKSNVVQEIHQVFSPWVSQVVRLYPNKPFAEFEYTIGPIKMSPELGKEVISRFDTSLNTNGVFYTDANGREMQRRKRDYRPTWSYEDKEPVAGNYYPVNSRAYIKDDTGIQLTVMTDRSVGSSSIKDGSLKFMVHRRLLYNDGTVDGEPLNEPGRDGHGLIVRGRFLVLLEASKNSARLHRLIGEEEFMRPLLSFSEGAGSWAQYHYHLKQRYQILQGHTSEGDYHGYQEESGYQALTRPLPANVHLLTLEKHGKVLLLRLEHQFAVGEDDELSKPVSVQLKGLFSDFTILSVTELNLSANLVKTELKNAVDWGGAFRENRISNDSFDVTLNAMEIRTFKIDVEWKQSHRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EFP3</accession>
    <name>A0A7D9EFP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Collagen alpha-1(IV) chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005430">
        <property type="protein sequence ID" value="CAB4006170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EFP3"/>
    <dbReference type="OrthoDB" id="10046555at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005581">
        <property type="term" value="C:collagen trimer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="entry name" value="Serralysin-like metalloprotease, C-terminal"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0176">Collagen</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="1027"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="226"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="246"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="296"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="336"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="402"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="461"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="499"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="519"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="571"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="591"/>
            <end position="632"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="643"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="663"/>
            <end position="682"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="691"/>
            <end position="717"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="725"/>
            <end position="744"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="752"/>
            <end position="774"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="782"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="799"/>
            <end position="815"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="840"/>
            <end position="888"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="903"/>
            <end position="1027"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1027"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1027" mass="102783" checksum="05F1EF35E21E3BD5" modified="2020-12-02" version="1" fragment="single">MFLAVKTRLLPVRTRFLAVRTRFLAVRTRFLAVVEDKVPGGEDKVSNCEDKVSGSEDKVTGGEDKVPRGGGEEYVPGGEDKVPGGEDKVPGGEDKVSDCEDQVSGGEDKVTGGENKVPGGEDKVPGGDDNVPGGEDKVTAGEDKVPGGEDKVPGGEDKVPGGEDKVSNCEDQVSVGEDKVTGGEDKVPRGGGEDNVPGGEDKVPGGEDKVPGGEDKVPGGGQGPGGEDKASDCEDKVSGGVNKVPGGEDKVPGGEDKVSDCEDKVSGGEDKVTGGENKVPGGEDKVTGGEDNVPGGEDKVPRGDDKVPGSEDKVPGGEDKVPGSKDKVPGGVDKVPGGEDKVPGGEDKVPGGEDKVSDCEDKVSGGEDKVTGGEDKVTRGGGEDKVPGGEDKVPAGENKVPGGEDKVPGGEDKVPGGEDKGTAGEDKVPGGEDKVPGGEDKVPRGGGEDNVPGGETCKVPGGEDKVSACEDKVSGGEDKVTGGEDKVTRGGGEDNVPGGEDKVPGGEDKVPGGENKVPGGEDKVPGGEDKVPGGEDKVTAGEDKVPGGEDKVPGGEDKVPRGGGENNVPGGEDKVPGGEDKVPGSENKVPGGEDKVPGGEDKVPGGEDKVTAGEDKVPGGEDKVPGGEDKVPRGGGENNVPGGEDKVPGGEDKVPGSENKVPGGEDKVPGGEDKVPGGEDKVPGGGQGPGGEDKASGGEDKVPDGEDKVPGGEDKVPGGEGKVPGGEDKVPGAEDKIAGAEEKVPGAGDKVPAFEDKVPGAEDKVPGAEDKVPGAEDEVPAAEDKVPGAEDKVPEDEDKVPGAEDKVSAAEDKVLGGENKVPGGEDKDKVPGAEYNVPAAEDRVPGPEDKVPGGEDKVTGGEDKVPGGEDKVPGAEDKIPAADDKVPGAEDEVPGAEDNVPGAEDKVPGAEDKVLGVEDKVPGAEDKDRVPGGEDKVPCSEDKIPRPEDKVPGGEDKVPGAEHKVPGGEDKVPGAEDKVPGAEDKVSGRENKVPGAEDKVPGGEDKVPGGEDKVPDGENKVPDGEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EP06</accession>
    <name>A0A7D9EP06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007321">
        <property type="protein sequence ID" value="CAB4011947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EP06"/>
    <dbReference type="OrthoDB" id="5990201at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="46150" checksum="CA5F6478D40ED13D" modified="2020-12-02" version="1">MIDEGYWTFKQLRKELEENGLTLREYPDGRIRIDFSKGTNSAGLRNLTSILGNRSSNGPTYTPHISDRTVDIHEGLRYLTVSCNLVNREHNIGPYGNRSTVITSLPIDGTRPLFGTTTKYNDIESQVRVDAGKYSEIRFEIGSNTGIIPGDEDRLFPRKHRNIHYGLPVSERKRIRRQKYRLTKYGGSFIEYEYLTGRSPFDVENDYKTLIPKTSRGLTKVGQKLFQQSIEAFVYSVLGAQAKTRWSITGQGATSLQTQEVFRKVVKDTIVQYDVTVTISDMRTAIANTHVVLNFAIMPGLILIPSDLRILAKPIPGFSNVLTVAKNGMTFGKNDKVNYTSNPVSTPTNNIDESHDITPVSSIDESHDITPTPTVEDFKPPELRQKSDTQIMALGMAAVASFGLAYLVFRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESJ6</accession>
    <name>A0A7D9ESJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Interferon alpha-inducible 27 2A isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A069665</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the IFI6/IFI27 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008824">
        <property type="protein sequence ID" value="CAB4015739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESJ6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031966">
        <property type="term" value="C:mitochondrial membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097193">
        <property type="term" value="P:intrinsic apoptotic signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001836">
        <property type="term" value="P:release of cytochrome c from mitochondria"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009311">
        <property type="entry name" value="IFI6/IFI27-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038213">
        <property type="entry name" value="IFI6/IFI27-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16932">
        <property type="entry name" value="INTERFERON ALPHA-INDUCIBLE PROTEIN 27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16932:SF18">
        <property type="entry name" value="INTERFERON, ALPHA-INDUCIBLE PROTEIN 27-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06140">
        <property type="entry name" value="Ifi-6-16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4015739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="7347" checksum="2D20F05CDFFEC2C4" modified="2020-12-02" version="1" fragment="single">WLGAIGGAIAGGVGAVVAAPVALGAAGFTAAGITAGSVGASMMSVMAPTVAGGVVATLQSAGAAGLGSAGAAVVGAAGAIVGAVAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EX89</accession>
    <name>A0A7D9EX89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger 862</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010100">
        <property type="protein sequence ID" value="CAB4018640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EX89"/>
    <dbReference type="OrthoDB" id="8754187at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012934">
        <property type="entry name" value="Znf_AD"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51915">
        <property type="entry name" value="ZAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31441" checksum="485D413356F2F646" modified="2020-12-02" version="1">MSLPVTPVKIIRKRLPDHLKCRVCGESVSVQGGLYRIFGGKVKTRDVHKMLEKLLGCFLSESTGSPVLCKKCFRRLERYESTLEEIAKLKESHRKNCEEWSSENIRRKRCVNSPGHGVKRISSVPQRNIQTVRRSLLPADNTTTSKVTNKENTVLSTSKPFSLEVLLNYPSGVVKRIPKDDIDQKVIKQIVLGEYSYAVNALWEKKEVKEHILKKISKDISTECDGLCSLTNPSMLRISSSEALKCFDEKSHVQEIRERSTYPGCHGRGGKRDENKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC89</accession>
    <name>A0A7D9HC89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PLANT CADMIUM RESISTANCE 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073452</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cornifelin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000245">
        <property type="protein sequence ID" value="CAB3979963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC89"/>
    <dbReference type="OrthoDB" id="1045822at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006461">
        <property type="entry name" value="PLAC_motif_containing"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01571">
        <property type="entry name" value="A_thal_Cys_rich"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15907">
        <property type="entry name" value="DUF614 FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04749">
        <property type="entry name" value="PLAC8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="11835" checksum="E4649C8B02ADF188" modified="2020-12-02" version="1">MSGEFSHGLFSCFDDCMLCLTTYFVPCYTMGKSAEAVGDDCLLCGLALLVPFIDLYALCSNRAKIREQKGIPGSAVSDLLTVCCCPLCALVQQAQEMGVKAPFGQSMSRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HV51</accession>
    <name>A0A7D9HV51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001514">
        <property type="protein sequence ID" value="CAB3989581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HV51"/>
    <dbReference type="OrthoDB" id="10065023at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="322"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="345"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="379" mass="42511" checksum="F50BD19268FAF8D9" modified="2020-12-02" version="1">MTCSIYGHNDEVLADDGTEASDSTDNIPVMTVPPEEAIQMEKCIVFTDTLMSLLKELHGRICKRPGCDRVLDYRKTYVGTCLVVSWGCSAGHKGSRWAAQPSCDKIRAGNLMLASALLLSGNSYTKVGLMFRFCNLQYFSKTLFTQYQSLYISPAVNEFWEQHKQELWEEKAGKDVVLSGDGRNDSPGHSAQYCTYSLADMEDHAILQMNIMDVREAAGKSNNMERIGFERGMDKLLTSQMSVKEVVTDEKADKYKDVKHQNDVWHGGKSLAKKINTASKTKANEDLALWAPSVRNHFWYCSKHCDKDVKNIKVCWVSSPKPVGSTRLESPQGKRHSNHSRWSTKDGTQVQQENKTVVCSKSVAAKTIYVHSRSSAEDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZU5</accession>
    <name>A0A7D9HZU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acetyl-coenzyme A transporter 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A047561</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002189">
        <property type="protein sequence ID" value="CAB3993113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZU5"/>
    <dbReference type="OrthoDB" id="6415790at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008521">
        <property type="term" value="F:acetyl-CoA transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035348">
        <property type="term" value="P:acetyl-CoA transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024371">
        <property type="entry name" value="AcetylCoA_trans_1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004752">
        <property type="entry name" value="AmpG_permease/AT-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12778:SF9">
        <property type="entry name" value="ACETYL-COENZYME A TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12778">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13000">
        <property type="entry name" value="Acatn"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3993113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="508" mass="56841" checksum="2FF6F1BB59C5B5C3" modified="2020-12-02" version="1">MAISRRTVIQQEDGPERISEKLSKEKENMKQDRGSIALLLLLYILQGMPLGLAGSIPLILQSRHVVYKDQAVFSFAFWPFSVKLLWAPIVDSVFSRRMGRRKSWLIPTQYLIGLFIIVLSSEADALLGQDNKDTAINVYKLTALFFSLCFLAATQDIATDGWALTMLSTKNVAYASTCNSVGQTAGYFLGNICFLALTSPDLANKYLRSTPQQTGIIKISDFLLFWGLLFIVTTTLVWIFKHEKDDVVKHGVTAAYKTAWKIICLPNVQQFMVILLTIKIGFAVTDAATGLKLIEAGVPKETLAMLAVPMIPLQIILPWIISRYTSGPRPLDISLNAMPFRLLMSIVLCLCVWWAHHVRTPGEQDFPVYFYLVLLLFYALHQVTTNCMFVAIMAFNARVSDPVVGGTYMTLLNTLSNLGGVWTSTTALWFVDVLTWKSCVGANTTHVTCSSKLNEKMCTDAGGNCITDIDGYYIETVICICIGFLWLRWKRHTTSQLQDQDPSTWKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I293</accession>
    <name>A0A7D9I293_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6570 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014851</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002916">
        <property type="protein sequence ID" value="CAB3996649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I293"/>
    <dbReference type="OrthoDB" id="10063152at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="1">
        <location>
            <begin position="27"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="490" mass="56235" checksum="70DCB62ECB3DD753" modified="2020-12-02" version="1">MCRCSFDSKEYICKTCHAKLLKDQQLCQAVENNLFVDETPTELAALEKLEQILAAQRIVFEKIVIMPRGQQRKIKGAICNVPVECSQTCNVLPRPPDRSGIILLKLKRKLQFRGHVYFQAVRPQFVISALNWLIANNPLYTNIEIRCDNISPDLINLNCPVTNQENIDNPLHSELLDEDAGEQDDPLNEHRSAASETCLQSIFQIILLPKTIQTVVIQLVEKFSTLHQVKFFTDRTIVAEPLAEDIDDEIKSNILTRRKEILSKVKQKIDDVLNPSKPTYDPHATPTYILIDIDITEQDYQWAMSISPDSGYELHLKRPIDSCFINNYFIAGLKGFAANVDLQPVFNHYKCITYVCSYFTKDETECSQAIINAAKEAKEANLNVRDGLRKIGAAFLSTREVSAQDCVYRCMPELWLRKIFPKTLFVNTDFAENRVRFAKKQQELDELDDSTDIFKSNIVVRYIDRPKKIRIVNDMCLAFICCALFQRLQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBK8</accession>
    <name>A0A7D9IBK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004194">
        <property type="protein sequence ID" value="CAB4001854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBK8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25635" checksum="846CA37BD34AFB3D" modified="2020-12-02" version="1">MESLIMMFFLLKRTWQWSTLKTNSIDLLLLQPSHFVTFVWNNNDINPESLKGFTLHCTNGIIIQSSTAHLNSTEQPSSNTRIATTAKRKPRSFQPIHNDIAPYIQVKRKCTEAPTDVDLNLYEEEVQYSSQIDTLWIVAKSQSSKLGIQQQIPNWTGFNYLVCGDDCDNFHNIGYLPAINQSPTSHDTVLELLSQSKLKAEKLRLTETDVVLDMAGHLRQLLKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IR39</accession>
    <name>A0A7D9IR39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A005996</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009255">
        <property type="protein sequence ID" value="CAB4016782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IR39"/>
    <dbReference type="OrthoDB" id="10067249at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="26"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="419"/>
            <end position="537"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="552" mass="63633" checksum="D2AAFA9AA718AFC0" modified="2020-12-02" version="1" fragment="single">MANLSAIISNGNVYRVTMECSNSRTRMVIIYRPPSSKTNQLTNSQFFDEFCNLMEQLIILPGNLLIAGDFNYHVDNSTNPDTIKFNKILESFNLQQHVNGPTHKKGHTLDLIITRIGDRLVTNIEIHDPMFSDHSAVSCMLQLEKPPLERAEIQYRKLRNINMDSFNEDLGKSNFSSDSELPTIIDQYEKTLEETLQKHAPLKRRTITLRPSAPWYNEEIGKAKRHRRRLERRWRASRLCIDKEIYIKQCQIVNDMIKEAKTTYYSSAISNNKYNQKVLFDTVDKLLHRKPEKCYPTTSSKTELVNNFGDFFSNKIAVLRSDLANISTYDNQLRPAELLTQCVEFRVFQTVTEQEVENIVDANGKKSCELDPIPATILKGCKKTLLPTFTNIINKSLETGCMPVQLKEAMLKPKLKKSNLEFEEYSNFRPISNLKFLSKIIEKAVATQLMEHLVNNNLEEPLQSAYKRFHSTETALLKVQNDILIAIDNQKCVVLLLLDMSAAFDTVDHEILLERMSKRFGIKDKVLEWFQSYLQNRSQTVMIDGVKSATKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ISY4</accession>
    <name>A0A7D9ISY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon opus</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007543">
        <property type="protein sequence ID" value="CAB4012524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ISY4"/>
    <dbReference type="OrthoDB" id="5957404at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="443" mass="49380" checksum="F40C864EFA5BFAEB" modified="2020-12-02" version="1">MAAAEETEIILDGKLLALGVTDLTEFGLYLKVDKAKIEGPTKVKIIKVIRTELEKIINTFDSDEQTNEYLKGLIDFLDENAQPKPSDEEELKAIESLQKAIQEKLLQAKQSENIPKSSGSSPTVADSTKMPLLGSNSGLQATILHRDFKIQGTIGEVGQKDKLGYQSLMLQVEIGLGKGYTDKEIVTAVIRAVQPGLQLRSYLESVGDLSLARLRKILRFHFHEKNATELYQALTNIAQQPNEDSEAFLMRALTIRQKILFASKESGSEITYDSSSVQSLFLHALETGLKDETIRAKLRPLVSKTDVSDEELIEAMFLAVSAETERSKKFNVASPGKSMKARVSAVQKEDDTEKKEILAAIKQVKTDLSAMQNEMKTLRETVHNQNQNPSTAKPSRKCENCKPTDECRHCFHCGELNHIARYCRKGKQYGSGNGQRLPPRDRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ITC6</accession>
    <name>A0A7D9ITC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008716">
        <property type="protein sequence ID" value="CAB4015440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ITC6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17801" checksum="CDFCBEEA918CEB56" modified="2020-12-02" version="1" fragment="single">YRHTRQNEMPYIISWEKPRWIQHQIGSLIETTELLLHWPEVKNILDLLVVMHIRFEALQVFKKPGIDLPIDLIYQRESDKSTPNRISNQAGTVCPMVTGRRKAIVVSAPEVYESAESGIDGDVSGAHAPELATTIYQNITGAYPRFITPRSMDGNCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWN3</accession>
    <name>A0A7D9IWN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030499</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008583">
        <property type="protein sequence ID" value="CAB4015109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWN3"/>
    <dbReference type="OrthoDB" id="5984884at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19868" checksum="4084A06D3365B7B3" modified="2020-12-02" version="1" fragment="single">TLPRTFQAAGWHKDKDDIHSPLCDQTIEQTVNRSRKDLDKAQNKADEKAVKDVINITKLYSTIKKTNLQTFSSLGKEATNKGSKEQLVAMKNSNILFAKMLLIAKSRNLQLDDVFKYSLRPFPCSLATSEGDPVKTHKSKLVHAIEEEAPSLSVSDRPLEDSACIRVAMAILQTLTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J2X4</accession>
    <name>A0A7D9J2X4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010896">
        <property type="protein sequence ID" value="CAB4020310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J2X4"/>
    <dbReference type="OrthoDB" id="6123923at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="19451" checksum="2D48DC579C40E154" modified="2020-12-02" version="1" fragment="single">MKRTKRFEAISDEQLKQRQHNLENKNTTDNEKKAERLFKQYLAEIGEDLNFCEFSEEKLDKHLAKFWFAARTKNGQKYKIGSLETTRYSLNRVLKRYGHKFDITKRECTAFTASIKAYEDATTELKQEGKGFTKNHAAVSPEDLYDIYHSRHLDPDAGPRALQNKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JLX8</accession>
    <name>A0A7D9JLX8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gastrula zinc finger</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070468</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017904">
        <property type="protein sequence ID" value="CAB4031799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JLX8"/>
    <dbReference type="OrthoDB" id="5983120at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02178">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="166"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="247"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="711"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="711" mass="81557" checksum="62E5DE2BE1F6C2B1" modified="2020-12-02" version="1" fragment="single">MASYFNMNEFSVEQLLALNSIIDSDEDMDTKVEDILEDRNYRIAPDDKGESPFQGERQFVDEYDRDMETKKPRRIPKNYKGKKGIMPTWKYSDRQKAKALLVEETYQSLLSKGVQGLPPTMGGRWRTDDVLVNEEIKRIENERNPKVKRPRGRPPKVKVDAEVKVPKKRGRPPKVKTDAEVKVPKKRGRPPKVKIDAKVRKQTVAERFLSQRKVKLSVPADSVITPTGPGKFTIHVDLNKRPVRKAPEVPKGVAPWRPTPKPRTVLPRERPVPKPRTGLLKERPVLKPRTRKPVSPPKVRKPVKVSREVKEQPIVVTPEEYEIDPFGTDLEKPFHRKIETAANGAAVTYSITPHYMDPLDQMTASRQVVRGILVNELKRMGGLKYTETIKVRMSKEIGDGKTKKDSIYFKSKTGTATNFEDIESTAAQNQLIILSRIETFQNLGSNWIILNIESHYVNIAMYKPLKGSSYMKLPGDISNPKCGLIDMNNNDDMCFLWSHVRHLNPKARRATTITQKDREFITNLDYDGIDFPVKISDIDKIERKNSINISVFGYKSKKQFYPIRNSKAKYDEHMELLLLGDGEGSRHYVLIKDVNRMLHSVSKHEHKQHFCLHCLHSCVSKEVLEKHKETCLEVNGTQAVKLPKEGTKIKLKNYRNSMPVPFVIYADFESILVPEEKKVESENPEDKSSTDLYQTHKACSFGLKTVCHYDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRR5</accession>
    <name>A0A7D9JRR5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LicD/FKTN/FKRP nucleotidyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020724">
        <property type="protein sequence ID" value="CAB4035114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRR5"/>
    <dbReference type="OrthoDB" id="444255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009100">
        <property type="term" value="P:glycoprotein metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007074">
        <property type="entry name" value="LicD/FKTN/FKRP_NTP_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052942">
        <property type="entry name" value="LPS_cholinephosphotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43404">
        <property type="entry name" value="LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43404:SF1">
        <property type="entry name" value="MNN4P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04991">
        <property type="entry name" value="LicD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LicD/FKTN/FKRP nucleotidyltransferase" evidence="1">
        <location>
            <begin position="137"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="35554" checksum="911127A312AE5764" modified="2020-12-02" version="1">MGRTIVAKITVLLSVFVCLIYLSLHTPSGKVAENTRCTEKGLLNCFATTPKQSGRKNTSNIRDRIIFPSTKPSNTQSMKTTKIPTKSAENRISFTTHTTESVRQIYGVGCKINHGQKGFPTLMEYWVDVAARRNIKDYFICFGSLLGIWLHGQPIPYDHDMDVCIFRKDFPKLDPEEAQRPFNYDDGKPHLIIQRSSPHSKSGTPRRDCKGNFVSHRIDPCSILDPHARVLLGSHSFLDIFVLADNDSTLFDEYERITYARDVILPVMPCKFLGMSTNCANKVPEYLAKNYGKDFMKPYKVCRHGSWERNKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JV32</accession>
    <name>A0A7D9JV32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062723</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021575">
        <property type="protein sequence ID" value="CAB4035977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JV32"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="158"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="82"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="159"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="27202" checksum="D536EEDCB29CA648" modified="2020-12-02" version="1">MNYRKTMNKGQKQKILENKRIKYEAMDHSNKGELLTKNMNYKGTMSKEQKQKILENKRVKYEAMDLSRKEKLLTKNMNYRKTMSKEQKRRTLENNKDKYEAMDQSKKEELLTKNMNYKETMSKEQKQKILENKRIKYEAMDHSKKEELLTKNINYRKTMSKEQKRKTLENNKDKYEAMDQSKKEELRTKNMNYKETMGEEQKQKLLENKRVKYQAMDISKKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JZ28</accession>
    <name>A0A7D9JZ28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023975">
        <property type="protein sequence ID" value="CAB4038238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JZ28"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="466" mass="53227" checksum="1132A5B613FF7DFE" modified="2020-12-02" version="1">MLKNAKASYHHRVLNDIRLNPRKCWKAINSIFPSKPNSANSTSNHDTMHTKVQQFGHYFANVARELKSKAFPLVNFAWRHNNNTQALRTNQIFKFSFVFTIFVEKELRSLKRSKATGIDDLPPNLIKDCATVIAKPLQNIINLSIKSSTVPALWKSAKVKPIFKSGDSDLVENFRPISILPIFSKIVEKAVHRQFYNFLENNKLLIDCQFGFRRNRSTKLAATLFCDKIRKEMDNGKLIGCVCVDLSTAFDTIGHGILLDKLPAYGVEGPELAWFTDYLFNRTQLVEMQNNCCRPSTITTGVPQGSIVGPLMFIVFFNDLKESVKNSEIIKYADDTVILYADKDAQNIENALNEDMNLIRDYFYHNELLLHLKKGKTEVMLFGTSQRLRKSGKNLNITYSNTVINFVTEYVYLGNVIDNHMSLNGNFNRSYKRARGRLRLLQSVRRNLTAASAIDIYNMTILSILT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JZG7</accession>
    <name>A0A7D9JZG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 ubiquitin- ligase rnf213-alpha-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024213">
        <property type="protein sequence ID" value="CAB4038443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JZG7"/>
    <dbReference type="OrthoDB" id="5987279at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031248">
        <property type="entry name" value="RNF213"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605:SF16">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605">
        <property type="entry name" value="RZ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="37135" checksum="FCACDD3237E35BAA" modified="2020-12-02" version="1">MCFRYCGIRDPSWAELYHFVNFLNIQLRDCEKSVFCDPTLVGDLLQGFRTFAVRFMIQMSRDFATRSLSDNNLGVKDASRPEEDDLAPFQIRRRWELSPHPYIFFNRDRNSMTFLGFLLNEKGDLLDPGTNTILEPKLMEPTLRGQLKHQGVNFDVNYEKRDRMACIKSLCSVMGIKYLHDPDPTYELTTDNVEKILAIHMRFRCGIPVIIMGETGCGKTRLIRFMCELQAGPDGPKNLLLMKVHGGTSFAEIEKKVEDAEKLAFFNEKIKVDTVLFFDEANTTDAIDLIKEIMVDRRVNGRAINPELTRLHFIAACNPYRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K891</accession>
    <name>A0A7D9K891_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A018818</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030051">
        <property type="protein sequence ID" value="CAB4042400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K891"/>
    <dbReference type="OrthoDB" id="5976047at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF141">
        <property type="entry name" value="TRANSPOSASE HELIX-TURN-HELIX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12812" checksum="AC52EA8EB0C0817B" modified="2020-12-02" version="1" fragment="single">KLWIFGLEPYDTVMADRGFKIKSDLTMKRCYSAIPPSAAKGNHMISDDVAVTSKVANVRIFVEKAIARVKWFRSLSTELTMLELPLVDDILIIYYALVNLLHPLQAEKIDIDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAQ1</accession>
    <name>A0A7D9KAQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042383</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029196">
        <property type="protein sequence ID" value="CAB4041944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAQ1"/>
    <dbReference type="OrthoDB" id="8044406at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17643" checksum="9FF4DF67A9FA5D95" modified="2020-12-02" version="1">MDEGLINGVVFLDLNKAFDTVDHGILLKKIYLYGVRGRAHDWFRSYLSNRTQYCQVNGKLSEPRTIITGIPQGSILGPLLFLVYINDLPNCLKSADCDMFADDTQLGTANKDVKVISETLNDDLANISVWMAANKLSLNKSKTEYMFIGSHQKLKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KBF0</accession>
    <name>A0A7D9KBF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044216</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031328">
        <property type="protein sequence ID" value="CAB4043018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KBF0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29863" checksum="F51362A314AC2919" modified="2020-12-02" version="1" fragment="single">MVASRKATKNMDNAISSEQIWSTKNLSTILSEDDMENKNVFTGTDQCMSGINISNNCISKLHNQTTEITGLSKINPMRIKKLPVRSRYALFYNVCIQESVTDATTTGCHLCHCDREPSRIQVKWLIRNFGKSRLLRKRLRHKIKRSVPRSSHLHYIVENIMHCQDIRIKCIPVVYCPKKVHKKCRTNHSAKNLKFNICEGILADIFYLSGSTHDLYAQQVYKNVNHLKNACQSALCIDIETNPGPVFYIDPSKTISAQYSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KDH2</accession>
    <name>A0A7D9KDH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC111086092</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078062</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035502">
        <property type="protein sequence ID" value="CAB4044583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KDH2"/>
    <dbReference type="OrthoDB" id="2326767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.175.10">
        <property type="entry name" value="Diphtheria Toxin, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="553" mass="63149" checksum="461624221EEC3ABC" modified="2020-12-02" version="1">MPPHCPKSYPLTRTLSQYFSPASSKNKPLELDGTAGLAVYQRTPVNPYLKEVVRHLRDPLELFPNVIIQAQCIVRIELNGVIMQEQWELTIKKTRRSLCTVLDALGILHQGLFHSNFLLEHVEQFLDESKRSDADLPDSKKFSEEDVQKLTKLKEHLLNLNKFLDCVLLNYSSFSCELPDIEKVKRAAKKLYKVIKNLKPDRLKNLVPEGMVFSEEYVLCSVLGLHNDFAARLRNLSPEMRNHKTDMCLLLCFLKERDESPNVENLRDTAAVECSLQKMGFTENRSNVIAKWIAEQPFPEHRSLLAWTQIYIENVFKYDIFLNDEVHNFPYKERYLDGWFSVNVEDCEGGDGRVPQVSVINTNTKEKAIAHIENKIAEFKESNPKGQLYFHGTDHDSVKNILECGIKLGKGSQICDFSNGCGFYVADNFKYALEEHAMKSKLAAVILFNISDDCLKKGLDLSGAERQMDLKSVIKYFRSGEPRSHGLGQKLYQEIKKCHYIFGPMSRDGSRKCEIVQQICIKKEEMAEEMGNPSHVAGIVFINTGAGTELARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L3A8</accession>
    <name>A0A7D9L3A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A064925</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the carotenoid/retinoid oxidoreductase family. CrtISO subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014072">
        <property type="protein sequence ID" value="CAB4026206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L3A8"/>
    <dbReference type="OrthoDB" id="38045at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052206">
        <property type="entry name" value="Retinol_saturase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46091:SF3">
        <property type="entry name" value="AMINE OXIDASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46091">
        <property type="entry name" value="BLR7054 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13450">
        <property type="entry name" value="NAD_binding_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4026206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="683" mass="77347" checksum="4FADA8A7E3288772" modified="2020-12-02" version="1">MILELIIWTLVIASTIFLLLWRLITPPKVKIVRKAPENEDLYAKSRFIPSKVPNNVDVIIIGSGMGGGTAASILSKYGKKVVVLEHHDKLGGCTHTFSWSRQNMYEEGHTTCEFDTGCHYTAVDMSMPVARSGAVMKFVTDGNAKWNDLGDPYDHLVLPHDPNVDPGCPNNDSYDFVCGKERLVQEISSQINPSEPLVVKRLNTFLSFCHNARKTIINMWLVRMCPRWLEGLLYKLTEPYYTFGKLTTGYVLSAMLEHGFSEEEVLAEKKLPEKPEVDLPNTWNRLKGVMVHPLGDYACQPSDSSVIAHSLTAFYYINGAAYTNGQTQTIANSCAKIVHEHGGECFVNAHVDEIIVKDNKAIGVRVCKSSSLDSGKPSDEKPEMTEIYAPVIINATGMHNLYNKLLPQDLPVVNDFKRTNKTIPSYGHNYLFVAIKGDAHEIGIPVTNTWYFNGYNTDECFNKYFENPTENRPPTCYLGFPCTKDPTWKERFPGISNCILISDAKYEWFEKWKNLRTHKRGDDYEEYKEKFAQKLLEILYEKVPQVKGKVLWYECGTPISDSNFLQSYKGGSYGTRCNLEFTNRENSRWIMRPDTEITNLFMAGQDAWTPAVAGAMYGGLLGATKVIGFFQGLGLLVSIMKQQARDIQAETGWSTIICFKRAIEIFFDTKPPRFNNNNNKKNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6U5</accession>
    <name>A0A7D9L6U5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084768</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014863">
        <property type="protein sequence ID" value="CAB4027538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6U5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11251" checksum="29DF7D19349FC82B" modified="2020-12-02" version="1">MASDEEGTSSRRKRTYNLTANDVFTLLGLEKDTNNQESDSDGSSDLNFSDFELDNSDESDCDADVQDVMDVDPTVPHTSTSRNMENYYRFRKGFCILCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L7F2</accession>
    <name>A0A7D9L7F2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078025</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015504">
        <property type="protein sequence ID" value="CAB4028470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L7F2"/>
    <dbReference type="OrthoDB" id="5983001at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="338" mass="38958" checksum="D06541F0EC67C51F" modified="2020-12-02" version="1" fragment="single">MTTHVNNVSKSAFFALRNVGKIRRYINQNDCEKLVHAFITSKLDSCNSILFELPAVEIDKLQRVQNAAARLVVGGKKYDHVTPILKQLHWLPIRARIDFKILLITYKALKELLDIYRPKRTLRSTSQNLLVVSKSKTKTYGERTFQVSAPKLWNSLPYYICLSSSLVIRRKLAETCSKLSEENWPKSPRAESEIALSETVKSDNKSTTHSLTVLEKKHNTVNVGRVVDCHRYSSNTRLLRLTAYVFKFVRRIKGQTVDKTLELSADRRTDRSRTDVDKGYSEQYVSRRSEQLINRTKISSSRLDQLRLFLDDKGMISCEGRIEHSSVYSELSFLLKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8L1</accession>
    <name>A0A7D9L8L1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016299">
        <property type="protein sequence ID" value="CAB4029624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8L1"/>
    <dbReference type="OrthoDB" id="5987175at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="28764" checksum="24C5CF5DD4A85E0C" modified="2020-12-02" version="1">MAAKNREIEEEIMPSDHEENDLLAEVDDEPMSVDLKAVPKVLTDLSKAITSMSSSMLNMEQSIKRMNSTQVETSDSEEQPAKKRKRRNEQENEADSDDSDGENLLRETEPPADSATEGESGVPCARLEHDALLSEISQDFDKEEDVGPKINQQLADIVNTRWSTKLNEAKIKEKMEKYPRPANCEKLIAPRVNAEIWDKLDQKAKHHDLRASAIQKSIAKVGSILAVSTDKLVQMRHKSFPKVETLVKMNTDVLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LSN4</accession>
    <name>A0A7D9LSN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Down syndrome cell adhesion molecule Dscam2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027726</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024002">
        <property type="protein sequence ID" value="CAB4038266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LSN4"/>
    <dbReference type="OrthoDB" id="8923679at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="23561" checksum="3D6202DCB2180B1E" modified="2020-12-02" version="1" fragment="single">PGKAPRNLEVYPSPRKAWLDWKVVQPYYQYGKQISYRIIVKNLRTAEIDFGHHVAVQDQSKIDYGKLLDGLKGLTNYQLNVSLINVVGEGPITSLLFATLEGVPSAYPQQFSIVNVTFNTISATWEAIDFEETHGILRGYHIYYRLAGLNGTWANVSVTDLAANAPVLSLRSYEIRVCGYTRVGDGIISPIHIVNTTGFSKYIIIMFFLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M6V5</accession>
    <name>A0A7D9M6V5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032160">
        <property type="protein sequence ID" value="CAB4043353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M6V5"/>
    <dbReference type="OrthoDB" id="7417618at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="188" mass="22432" checksum="473A300A687681A9" modified="2020-12-02" version="1" fragment="single">TLDEIKERILCVERDMGHMKDSIEFAHAELRELKEEADKSKRTNDLNAQKLCELEDSNRRLQESVIDLKARSMRDNLLFFNVNEDERENTTEKIYEILERNLEIPNARDTIKIDRSHRIGRKREGQRKPRAIVVKFNFHQDRIRLNARKLRGTRIGIAEQFPEEIEKIRQTLYPELKKAKAQGHRVRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MBY4</accession>
    <name>A0A7D9MBY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LOW QUALITY PROTEIN: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055423</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039578">
        <property type="protein sequence ID" value="CAB4045459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MBY4"/>
    <dbReference type="OrthoDB" id="5988596at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF19">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="236"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="169"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="242"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="252"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="34214" checksum="9CC7185748B52740" modified="2020-12-02" version="1" fragment="single">MATYGRIDEYDESEEWTQYVERMDHYFEANDIEDKDKKRSIFLSVIGAKTYKLLRGLIRPEVPNKLSYEELSEAIKNHYVPKPSVIVQRYKFNTRVRRNDESISTFMAELRALSEHCEFGSALDEMLRDRLVCGVNEDRIQRRLLAEPTLDLKRALEIAHGMETAAKDGRDLKGEMPNKHSMNKLHGGRHSDEYKECYRCGGKHDHTKCRFKTEKCHQCGKIGHIAKVCRSSKKVSSEKRLKQGKNFRGKKGRDSEMNKVEQHQRDEELAYNLFSFKDKEKTPPYREKMTVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FHS2</accession>
    <name>A0A6S7FHS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005888</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000170">
        <property type="protein sequence ID" value="CAB3979115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FHS2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12992" checksum="FA905CAA3B6AAD03" modified="2020-12-02" version="1" fragment="single">MTAVENRALSVTSSAFLSVLEVFDAQSLVNLQCGRMVELEIEFQIPAGEYDDYGVQQCKEVMKIISQMQHIKESGMDFDPRLANRFMRCLKEAVLAGVWKGLCPEWFVDDKNRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FN43</accession>
    <name>A0A6S7FN43_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017937</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000101">
        <property type="protein sequence ID" value="CAB3978293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FN43"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="40300" checksum="895357A76CCA4EDF" modified="2020-12-02" version="1">MALIKCQHTWLRWLEGDAKYVRVLSFDFRKAFDSVPHDILCEKLKKLPINPYVTNWLISFLEDRKQRVVVDGIETEYLNINRGVPQGTVLGPVLFSIMVNDIKTVNPINQLVKFADDMTLEVPGMKTEIHPKPKWTVYKHGLKITRMSLNMEKTYEMIVRRNIPTLLPDPFPFIKRRTWLKILGITLQDLPSKWDLHFDEMLKKASARMYIMRVCKYYGFPIKQLDMLFNTLIMPIITYGIELWGGAYFNKYISQIDKFINRAHRNGYISEKLNIKEISIKRDKKLWDKVIHNKDNALQELLPDKLNRHLRPRGHEFELPLVRTERFKSSFVNRCLFNFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FTS6</accession>
    <name>A0A6S7FTS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A065215</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000563">
        <property type="protein sequence ID" value="CAB3982998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FTS6"/>
    <dbReference type="OrthoDB" id="348678at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10340:SF57">
        <property type="entry name" value="METALLOPHOS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10340">
        <property type="entry name" value="SPHINGOMYELIN PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="58"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="58"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="69"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3982998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="429" mass="48854" checksum="D59A2C36FEE8ED0F" modified="2020-12-02" version="1">MADNFDYNVLEKTSGRNGRCSRSTILVFVLSVTVIALVVVIAVTYGKDLQCDDKYHKNHAHNRSKNSSKIHNSTTGNKNSSTIHNSTASSNSMSFFLFSDVHLDPYYKAMAGNDFCRNESKPSTYNASYGRTGCDSPLRLLLEGLDAMKEHAHNLPNLDFVMLSGDTCAHRIKTDRKNVVLEIMNTTSKAVKLRFPDIPYFPSIGNNDIPGHYVMPAENDTWYSDLLNIWQDAILCKHCNMSYQTTTEAELRKTFLYGGYYSVSIAGGNMTLLVLNSMYWTSSTWRPDDYFQERAEKQIKWIEEQLQLAKSTNKKVILTSHIPPGIDAYAGKILWLSNFTDLYMDLVTNKFSEVVAGQIYAHFHKDSFRFLQANKKDLSYKNSSYILLMPSLSPVYRNNPNFRVVHLDPGLRAIKDYEQWYMNLVMATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FU20</accession>
    <name>A0A6S7FU20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000388">
        <property type="protein sequence ID" value="CAB3981427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FU20"/>
    <dbReference type="OrthoDB" id="5949662at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20787" checksum="275181E789E2AF14" modified="2020-12-02" version="1">MEGFFCRRLLSQLTRKIDPSQFARKGHSTMNALLFLLQPVYEALDSGNACARFFFADFSKGFDRIDHHVLMQELMELDIHPVLYNWINAFLSNRKQAVRIGGTLSDWKSPNSGIPEGTKLGVILLSVMTNKLISDWHLRTKFVDETAALEIIPRNLISYLNHTVDELHQISVNHNMSLNPCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FV90</accession>
    <name>A0A6S7FV90_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein MAK10 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A005436</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000220">
        <property type="protein sequence ID" value="CAB3979706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FV90"/>
    <dbReference type="OrthoDB" id="269405at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031417">
        <property type="term" value="C:NatC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007244">
        <property type="entry name" value="Naa35_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057982">
        <property type="entry name" value="TPR_NAA35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21373">
        <property type="entry name" value="GLUCOSE REPRESSIBLE PROTEIN MAK10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21373:SF0">
        <property type="entry name" value="N-ALPHA-ACETYLTRANSFERASE 35, NATC AUXILIARY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25789">
        <property type="entry name" value="TPR_NAA35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAA35-like TPR repeats" evidence="3">
        <location>
            <begin position="11"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="221"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="227"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00030494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3979706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="389" mass="44926" checksum="16073D0587D23D73" modified="2020-12-02" version="1">MENLIKRLDSATKCTENTALHQLLDFFESFSKLYPCVFSRSLLQIIFWHNNKVFGKTPLSAVLQQAIKQFNSPPSIAEKSPLINNPQAQKFVESFLTMAGRPITSLIRCMCHNRARQRDKLVFLLDEFAVLQDEADKVDADLHHMIVAVEPKREHFACFGSWVLNRTLTIMIQYLLLGMELQLFSAHEYHYLFWYLDYLFNWQATCLSRATELLQSHETALEQKSGKSGKKNKKKKRASEKYIQEHQGMKQFYHGMRNLCSGYMKALEGFLLCGKICYPAEQFDSERMRFEHRFFPFQTLDTPQPRLFTQYQETLSITLSHITKETDLFGLSARSFQQAKTIFEGLSNVPQKVDELLKVAKTNFVVMKLAAGGHKHDSQVNTVCVQGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZE4</accession>
    <name>A0A6S7FZE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107326933</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000411">
        <property type="protein sequence ID" value="CAB3981622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZE4"/>
    <dbReference type="OrthoDB" id="6782434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="592" mass="66897" checksum="87849AA8010A1766" modified="2020-12-02" version="1">MAETSSDCGRKKAKVDGSLDGSLDGSSRKFDGESDVTRHIQGEKHQKNVRARTNAAPLSSFGFISTSDPLKDKVTTAEIKVATLLVENNIPLAFADKLSPMFKELFPDSNIAKNYHSARMKTTCILNGAIAPHVKQTLVEQLKSGVFSMSTDGSNDKDLDKMNPITVKLFDINTSRAVTRFLDMGVTQVVDAAKASTIFEAIDEVMTDNSIPWKNCIAFSVDNTSANLGQFNSIKTRVLERNPDCYFLGCPCHILHNTAGKASSQLKEVSGFDIDDLAVDIFYYFDKSTKRKAALSDYAQFCDLVYRKTLKHVTTRWLSLNTSVNRILSGYEGLKSYFLSEDDEDSKIPRFARLRKHFENPMTEIYLMFFQAVIPTFTTINEFLQRGEPVIHLLLDQLESFLKKLAGKFIRIDAIAAANKVQRFYDTVGAFYRAAAQYAVAKLPFNDKVLENSRFVNFEKRREHEFTMVEFFLQRFPDHLEMSVEEQEKLQEQFIDYQLLSNDNIRQHVWNDATVKTDEDGTACLFRMDVIWGHLNATKSADGTPRFHLLARVALTVLCLPHSNAEERVFSMIGKNKRAERSSLQVKGTLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2U0</accession>
    <name>A0A6S7G2U0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087739</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000569">
        <property type="protein sequence ID" value="CAB3983052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2U0"/>
    <dbReference type="OrthoDB" id="10656628at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16948" checksum="0DBD9FBC8A5B03A8" modified="2020-12-02" version="1" fragment="single">GVLKAVMKTESDAQKLRTRLLQRREKLLDVNYESEVKKGCDEEHCNLSKSIADLQALLKKLIQVVNDLRNSYLHLSRSKIDSETTVHENARRKRRKKENNRKLIQKSSLRTDRNLLEWKVRLNCYLMFSKATKFQQEFVMKVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3N5</accession>
    <name>A0A6S7G3N5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020616</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000607">
        <property type="protein sequence ID" value="CAB3983402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3N5"/>
    <dbReference type="OrthoDB" id="6155538at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="199"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="215"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="230"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="30300" checksum="C88FD3408868778D" modified="2020-12-02" version="1">MKYSPRFPQKLSFQSLPEVLKSDNGPPFNGAEFESYAKHCGFTHRKITPYWPQANGEAERFMRTLQKCIRAAIIEKKNWKQAMNQFLLNYRATPHSTTNISPSESLNNRKIKTMLPEMPSSSKPEQTTMAEYDARKKEQMKSCADNRRGAKESCIKPGDTVLLKQPKENKFSAPYNPQPFVVEKKKGTMVTAKNDSKVVTRNSSQFKVISTKSAKHNDKEVEPKVPRPSNPQEQKTLQQRPKRNVRQPARFADYVNYEPMRTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4B0</accession>
    <name>A0A6S7G4B0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055163</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001248">
        <property type="protein sequence ID" value="CAB3987884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4B0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="136"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="269" mass="30594" checksum="FF02F532A1B7BA35" modified="2020-12-02" version="1">MTLLNGNRVKTQPAKKLLIDTLTKPASVLPNNNGEFKNFTFGIPQLQQDITTEIFADENQQENQNNKQTELNVDNFTPSELQNITAEIFGNEGITLEELNSSADMIGNIEFDTSLLQSDFDDNNNLATTQQPQQHRGKDVSMAKKIHDEEEKTNKRKRAEVQPRLSGRPTIRETLMKIDGEDDLEVLQLREAKLILVGTITDTFRKSKTVFTKCKGGDIIVNTQKQFLTYELFGDLRKKSLDIIKEQREILLKINAAEATMHNLMKKPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G589</accession>
    <name>A0A6S7G589_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Phosphate transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A030543</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Sodium-phosphate symporter.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Membrane</location>
            <topology evidence="1 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000692">
        <property type="protein sequence ID" value="CAB3984069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G589"/>
    <dbReference type="OrthoDB" id="260807at2759"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER01006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.50.60:FF:000482">
        <property type="entry name" value="Succinate dehydrogenase complex, subunit A, flavoprotein (Fp)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-dep_OxRdtase_2_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003952">
        <property type="entry name" value="FRD_SDH_FAD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001204">
        <property type="entry name" value="Phos_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11101">
        <property type="entry name" value="PHOSPHATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11101:SF80">
        <property type="entry name" value="PHOSPHATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01384">
        <property type="entry name" value="PHO4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00504">
        <property type="entry name" value="FRD_SDH_FAD_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 10" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="89"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="143"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="179"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="213"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="374"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="403"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="460"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-dependent oxidoreductase 2 FAD-binding" evidence="11">
        <location>
            <begin position="526"/>
            <end position="720"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="720"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3984069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="720" mass="77882" checksum="5C6EF4A6E8D4161D" modified="2020-12-02" version="1" fragment="single">MVSTGSYLWLVIIGFIIAFILALGLGANDVANSFGTSVASKVLTLRNACVLASICETAGAVLAGGKVTDAIRSKIVDIDYFQNGTESDVLVGSFSALCGGALWLIISTAAKLPVSSTHSVVGAMMGFGLVATGGKAINWKEFGLIVASWVLFPIMAGVISSCFYLALQFFVLKKPDSYSAGLTALPIIYFIVISINLFAVFYNGSEILRFNTIPLYGCLILSFGTGLLVALVTYFVFVPCLRKKIDKEFELETLDSEFVDDKNVQKDNEVKEKTKLLDEANNGDSKNKKYSEGIINETVSDADEEKSPSQPKQHQVLTDEPKTARLLAFVQILTASFASFAHGSNDVSNAVGPLDSVWLTYKHDLIDSDINTPAWILFYGGVGISVGLWIWGRRVIETVGQDLSSITPSSGLIIQFGSVCTVLVASNLGIPISTTHCLVAAVVLVDFVRSNHVTEWKVFFNILIAWLVTVPVSGNIGSAFGARNSFRNSLPSVSRGIHYGFSGVWSNNTAKSEFSKEYPVIDHSYDCIVVGAGGAGLRAAFGLANGGFKTACITKLFPTRSHTVAAQGGVNAALGNMEPDDWKWHMYDTVKGSDWLGDQDAIHYMTKEAPEAVIELENYGMPFSRTDDGKIYQRAFGGQSYDYGKGGQAHRCCCVADRTGHSLLHTLYGQSLRYDTDYFVEYFALDLLMEQGRCAGVIALCLEDGSLHRFNAKNTVIATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7G8</accession>
    <name>A0A6S7G7G8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000767">
        <property type="protein sequence ID" value="CAB3984647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7G8"/>
    <dbReference type="OrthoDB" id="425681at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14732" checksum="54BF241DA2EE8DB9" modified="2020-12-02" version="1">MGVFIPCIEDYEFWSILPEMGLLLYSNIFSCILINGETTEFFSVSRGVRQGCPLSPLLYVLVAETIASAIRADRFIDSYILPNGQTVKLCQYADDTSVIVTTDLALNALFHLFTRYEKTSGTKLNVKNVMGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7L8</accession>
    <name>A0A6S7G7L8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001222">
        <property type="protein sequence ID" value="CAB3987725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7L8"/>
    <dbReference type="OrthoDB" id="5946700at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46601:SF1">
        <property type="entry name" value="ADF-H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46601">
        <property type="entry name" value="ULP_PROTEASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="320" mass="36358" checksum="ACE19C4E53742D38" modified="2020-12-02" version="1" fragment="single">MLVVVFRLRNKGNRLLLKKLLLCDAGSDPMPLLRPSPSIDSRYYSTSPCSDECGQNRKHRRKPIPVTEHIFVISPNCNHDHPSVHSARKLMAGYLKEIGYDVKIMHQWTDGCSTQYKSRHCMGDVSQSSSDFGYVTICNYFQTSHAKGPQDGAGANLKHKADMAVIKRQVVIRNAKEFRYHYAHECAKCLFKRLFREDFNETLTRNVMRNLLSSCQRTAIGPTNHVKILQAIKHLATKDAIVAIASADRGEEYYLLQIIGDSPEKASFKFSLLRTSKREQSCSLCCNRQNFYLKRTVHDPMTPPLHTQALSIVHVVGVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7R6</accession>
    <name>A0A6S7G7R6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like RNase H C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022054</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001473">
        <property type="protein sequence ID" value="CAB3989354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7R6"/>
    <dbReference type="OrthoDB" id="6141491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048367">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21789">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H C-terminal" evidence="1">
        <location>
            <begin position="53"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="13897" checksum="C3129C4E4ED9E8C2" modified="2020-12-02" version="1" fragment="single">MPSAFGDEDLPASCKFVCQKGKVSINGIKELVKFIESPEIQSLQGSHYVIPKRLSQDLVESFFSVQRQSCGGSNNMTAIAYGYNVNSAISYSATKLLRKKQTNVMENDEIELSIEQESNTSLPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9J5</accession>
    <name>A0A6S7G9J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001355">
        <property type="protein sequence ID" value="CAB3988628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9J5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="150"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="34023" checksum="2C4C68A40A0B95FF" modified="2020-12-02" version="1">MADGHVHGSSNTSVNNHTASWDSNIINESIKSESITYDGTRVKWCKDYESLKIFIEAAFGLDGKWRSFGESSKKFDAANADFSTIWYPGKLNTLTFNGKIGKQAKENLINRCELSSMSDVENTVNQTTSKCTQLEGKSIEMQIQNDDQNDERCSNNEYHTKPQDKARSVPVANPDKVRSRKKKQQQPDRPKSQQAENLHTKSSNWLNYLPLFEVPSRKQSEEIENKKGKINKENFPSRPGNNCSYTDYHFPTRNYYPPFRKHRGSWHSTHPPSYQDRREDWLNYLVFVRQALRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GID9</accession>
    <name>A0A6S7GID9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038188</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002205">
        <property type="protein sequence ID" value="CAB3993184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GID9"/>
    <dbReference type="OrthoDB" id="5958943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14043" checksum="E2C45A14B617D04F" modified="2020-12-02" version="1">MTMCSIPIVVYYGPSAINYRVTVNNMTTSASLGSGGAEDMDYDRFSRRLFYYVSGNFYSIEQDGSGLRNIGAVGNVERFTVDGRNNIIYYINTLTDTIYKLNMTNLAETNLNIRAKDIDMDSVNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJR4</accession>
    <name>A0A6S7GJR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001898">
        <property type="protein sequence ID" value="CAB3991673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJR4"/>
    <dbReference type="OrthoDB" id="6016580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="266" mass="30381" checksum="08706E8F859E5741" modified="2020-12-02" version="1">MAKSTGLDKISTKLIKQAGDTITESLLEVFNLSLRTGIFPDDWKFAKVTPIYKSENKTLCENYRPISVISNIAKIFEKLVCRQLNTFLDNNNIIVKNQSGFRRNHSTETSLLQSTEMWLKSMDQGQINGVIFLDLKKAFDTIDHQILLSKLQAYGIRDHTLKWFQSYLDQRKQICMLNNCKSDIETIRCGVPQGSNLGPLLFLIYINDLPNCLETTHSNLFADDTILSCQGHLSIDIEYKLNKDLVNAQKWLSANKLTLNNEKTNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GK49</accession>
    <name>A0A6S7GK49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035782</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001926">
        <property type="protein sequence ID" value="CAB3991843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GK49"/>
    <dbReference type="OrthoDB" id="5978393at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="15684" checksum="3439023ADD0AB2D2" modified="2020-12-02" version="1" fragment="single">PVPRKKNIKQQQKNPKQKTTIVLGDSMVKHPKGLDIGKAIGHRVVVKASFLGARTSDMVHYSKPSILQEPDQIILHCGTNDLHNSGPEAVANRIVDLAQEVKSSTEANVVISELVCRSDPAKNEKVRGTNVLLARLCKQKTCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQL9</accession>
    <name>A0A6S7GQL9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF6570 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A069517</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001095">
        <property type="protein sequence ID" value="CAB3986940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQL9"/>
    <dbReference type="OrthoDB" id="5979373at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="2">
        <location>
            <begin position="5"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3986940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20816" checksum="3FB2313FF407861F" modified="2020-12-02" version="1">MQAPRGRQPKITGNVVNVPADICNTVNMLPRLPQDTGTIKVQLKCRLQYKSSSALSLNVRPNKVMQAAAWLVNTSELYREQGITFDQHWLSYFDVPTPNSDNENTTVDETNLTSSENEWSEDETEIPAGVTDSMLTPTDFVDDTERQHIYNVAPGEGSRPLIIFRDVRVLWSKDVLILLRILIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRH3</accession>
    <name>A0A6S7GRH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Activator of 90 kDa heat shock ATPase homolog 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A078492</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AHA1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002077">
        <property type="protein sequence ID" value="CAB3992569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRH3"/>
    <dbReference type="OrthoDB" id="567237at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd08892">
        <property type="entry name" value="SRPBCC_Aha1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013538">
        <property type="entry name" value="ASHA1/2-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08327">
        <property type="entry name" value="AHSA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Activator of Hsp90 ATPase homologue 1/2-like C-terminal" evidence="2">
        <location>
            <begin position="30"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3992569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17211" checksum="7206346A5ABAEC0C" modified="2020-12-02" version="1">MDANSDLYNQTAGCKIETSKFTSTEEFLTSVGEMYHILTNEERIKAFARSDVKVDAFKGGSFVLFGGTVNGKFLELLPDKKITMLWRFNSWPAAHNSTVTIELNQKDDRTELKFSQTGIPTSDFERTKQGWKQYYWSSIKQTFGIGMKYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUE4</accession>
    <name>A0A6S7GUE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066757</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002669">
        <property type="protein sequence ID" value="CAB3995463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUE4"/>
    <dbReference type="OrthoDB" id="412793at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12384" checksum="E4DBBB41DFA54BE3" modified="2020-12-02" version="1">MLHNPIIEFDLEPPAYRQITNIIRKMKTSGSPCPLDQISIISFKRCPYLRTYLTELIQAVWLSGSVPDEWKKACTILINKKNDANLPRELPSNNSSIRTTESIHFKSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GYX0</accession>
    <name>A0A6S7GYX0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA-binding PNO1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A066034</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PNO1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002947">
        <property type="protein sequence ID" value="CAB3996795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GYX0"/>
    <dbReference type="OrthoDB" id="1932641at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd22391">
        <property type="entry name" value="KH-I_PNO1_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd22392">
        <property type="entry name" value="KH-I_PNO1_rpt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1370.10:FF:000009">
        <property type="entry name" value="RNA-binding protein PNO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1370.10:FF:000048">
        <property type="entry name" value="RNA-binding protein PNO1 isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="entry name" value="K Homology domain, type 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055212">
        <property type="entry name" value="KH-I_PNO1_first"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055211">
        <property type="entry name" value="KH_PNO1_2nd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12826">
        <property type="entry name" value="RIBONUCLEASE Y"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12826:SF13">
        <property type="entry name" value="RNA-BINDING PROTEIN PNO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22891">
        <property type="entry name" value="KH_PNO1_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3996795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="27326" checksum="7EAD7D82F4D48783" modified="2020-12-02" version="1">MNMADKSTEEGSSKSTSDGQNNEEFKTVSRRKRKKDTAEDMDTSVSAIKRPSFPPLSGESLTSGKVERRKIPVPPNRYNPLKDNWMQIFEPVVEHLHLQIRFNLGSRHVEIKTCKETKDFGAIQKAEDFVRAFILGFEIKDALALIRLDDLFIESFEVTDVKPLKGDHLSRAIGRVAGKGGKTKFTIENVTKTRIVVADSKIHILGSSQNIKIARTAICNLILGSPPSKVYGNMRAVASRSATHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H025</accession>
    <name>A0A6S7H025_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014703</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001736">
        <property type="protein sequence ID" value="CAB3990847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H025"/>
    <dbReference type="OrthoDB" id="6273436at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031410">
        <property type="term" value="C:cytoplasmic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032483">
        <property type="term" value="P:regulation of Rab protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051696">
        <property type="entry name" value="DENN_Domain_GEFs"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12296">
        <property type="entry name" value="DENN DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12296:SF30">
        <property type="entry name" value="DENN DOMAIN-CONTAINING PROTEIN CRAG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="29711" checksum="2793FAF087BEC9C4" modified="2020-12-02" version="1">MPEERDLISVNYVSPLVLRKELENLMDNEGVGVLESPDIIKEKQVIFWNMAWYFQRLNLPTHLTDHIYGNYADEERSKDFDGQVHVSTSWDLDRPIDDDHIPLYVLWNVPAHEHQDATIDEKSWTPRSVVQSVVANIKVNDIADPFGCLFEERNRQKLINPNIQWSIYREMLFLSLMACGSDNINIDSFDREYKRTYRYLHRDGNSGTYPLTNEDHPLPTRAMWCRRAFKPPTLQPRLPPSRYFLSQGLISED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4Z8</accession>
    <name>A0A6S7H4Z8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053123</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001828">
        <property type="protein sequence ID" value="CAB3991331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4Z8"/>
    <dbReference type="OrthoDB" id="7735550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00037">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00087">
        <property type="entry name" value="FReD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.530.10">
        <property type="entry name" value="Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.100.10">
        <property type="entry name" value="Mannose-Binding Protein A, subunit A"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001304">
        <property type="entry name" value="C-type_lectin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016186">
        <property type="entry name" value="C-type_lectin-like/link_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020837">
        <property type="entry name" value="Fibrinogen_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00059">
        <property type="entry name" value="Lectin_C"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00034">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00186">
        <property type="entry name" value="FBG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="C-type lectin-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50041">
        <property type="entry name" value="C_TYPE_LECTIN_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00514">
        <property type="entry name" value="FIBRINOGEN_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="906" mass="102478" checksum="AC63F59E532471FA" modified="2020-12-02" version="1" fragment="single">LKRFSDSSAFSWVDGTPLDFNLWKNGEPNQPEKFCTRLDSSGEWKDGDCDKFKSFPCEKVLAPDDVKPKDCLELLLSGTTRSGVYFIDPDSLGPFQVYCDQDTVGGGWTVLMRRVDGTEYFNRTWEEYKNGFGSLDQNFWLGNELIHRLTATKQEALFDIESDTGDNSMVLYKNFKVDSEDNKYKLTIDEYESSDRSDSMSESNGKFFTTKDRDNDEHGGNCADISNGGWWHRSCAKAYLTGTYEPSDPEFRMRWGGWTLSVVECDSKYCYYWTRQTKSWLKALDNCRNFSADLVFIKSTAGNDILADLSVSNHGHDEIYVGLGMGDTATWTGGVPVTTNLLTQPLPADKCVVLKANREWGMVDCEEPKFFVCMRGKYCYKGDCYFAAGATNKVYSDAVSKCTERGYKLPKISSRGEHLFARKIMRVATSDSSTPSVFTGLRLVGTEFQWKDGSKLQYNQWSPGEPTGGGEYLVVLSTNGFWDVPDSYTGRILCEKALTVKSCAQVTKYGRSESGYYSLHTGNPKLLTVYCDLSSSDGPWTVIQKRIYNTPPLDYARKTWADFTDGFGQSESNFWLGNKHIHELTKTPQKLKILLHTADFNVYEAIYEDFTIGDEASKFVLNFGAYSGTAGDSLFFHRGMKFSTVDQDNDPITAGVCTTDHPGGWWFSNCLESNLNGVFTTKTNDLYTLYWKTISQPIIKTEMKIQAYKKDPDFLPDGLIQNEIASLGLTFNERTLKINMKTSYQHWTAMIPNPGPFPTHVAITWEDNSYLRYYENGTLLAEVQAVVDRKLTYSNMTNSEYTWLNQLTFFDRQLTKQDVKTQYQKKILGFEEDSFLWNFTGMSSYKWDVIKGCTPSNLTGPCGDHSYLRNNGRCETIRFTEIRSNCDGDGDNDGSSGTCSDGDNGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6C4</accession>
    <name>A0A6S7H6C4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027168</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003330">
        <property type="protein sequence ID" value="CAB3998349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6C4"/>
    <dbReference type="OrthoDB" id="10548925at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11924" checksum="D2EE53A6B3AC3F54" modified="2020-12-02" version="1">MATYEGKLKSMETKIKLLKLTDEETQRTIEKGHVPSLERQQRVLKTKLEEVYSLKVEIQELKIQSDEETDNILKEFTPKRRAAKIAKENIRLIAEEEEEEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7F4</accession>
    <name>A0A6S7H7F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018727</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002015">
        <property type="protein sequence ID" value="CAB3992280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7F4"/>
    <dbReference type="OrthoDB" id="6084584at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17035" checksum="25461BBEB171134A" modified="2020-12-02" version="1">MEYTNHYIRAAAVTVLDQKNFEARHIVRVSGHKSEASIRSYSRRLSEEKQRDISNSLSHYCCFPSHAMSDIRLVPNPESEPAAKVPRLVTESSSSFIEISSQEYRSALDTVLHSPLPCLSLPGSPVLNSYRLLGEKHYEKRDCFIPARRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H970</accession>
    <name>A0A6S7H970_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003618">
        <property type="protein sequence ID" value="CAB3999583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H970"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="180"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22199" checksum="6F658DA6D04314A4" modified="2020-12-02" version="1">MGSESGEEISAAVREVEEAAKASQKKAKSTARKTADKSQTESKRDKLIELSRDGVIEKSASFIRKSNKDVVDRLYHEYESQRMSCASDFLSTLIISKFASILGSFGAVASSDKLSEELLSDKLLKDDVSYLTRTISPNIPFIGLISGGCTTAKHVVAHKWKKKEKPEEISEEAKHILLNTEEEECQDTNGKTLGKEQSLKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBP7</accession>
    <name>A0A6S7HBP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone deacetylase complex subunit SAP30L-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040473</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003851">
        <property type="protein sequence ID" value="CAB4000503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBP7"/>
    <dbReference type="OrthoDB" id="510958at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1800.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024145">
        <property type="entry name" value="His_deAcase_SAP30/SAP30L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025718">
        <property type="entry name" value="SAP30_Sin3-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025717">
        <property type="entry name" value="SAP30_zn-finger"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13286:SF6">
        <property type="entry name" value="HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30L-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13286">
        <property type="entry name" value="SAP30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13867">
        <property type="entry name" value="SAP30_Sin3_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13866">
        <property type="entry name" value="zf-SAP30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15405" checksum="5283D7FDEB64BAE3" modified="2020-12-02" version="1">MNGYQSESEDNSPKPHRVCCLIEDKDRCKRLAGNACYSKRIQKTVAQKKLKLAAAESAGHIYICNYHKDMIQTARSKRKRKDSEDENDGQEVDVSILQTSTLRRYKRHFKLQTRPGLNKTQLVEVSKICTGVEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIJ7</accession>
    <name>A0A6S7HIJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gastric triacylglycerol lipase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A023929</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AB hydrolase superfamily. Lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002730">
        <property type="protein sequence ID" value="CAB3995790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIJ7"/>
    <dbReference type="OrthoDB" id="9974421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1820:FF:000012">
        <property type="entry name" value="Lipase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006693">
        <property type="entry name" value="AB_hydrolase_lipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025483">
        <property type="entry name" value="Lipase_euk"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11005">
        <property type="entry name" value="LYSOSOMAL ACID LIPASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04083">
        <property type="entry name" value="Abhydro_lipase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000862">
        <property type="entry name" value="Steryl_ester_lip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Partial AB-hydrolase lipase" evidence="2">
        <location>
            <begin position="27"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3995790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="398" mass="45530" checksum="E0C89A5F60F6E7EB" modified="2020-12-02" version="1" fragment="single">TSILSSTAAKFQMKTFERLSMFRNSASQIIQHWGYPVEEYDVTTSDGYILTVQRIPRGRYDNETGTKRPVVFLQHGLLGSSSQWITNLPNQSLGFVLADRGFDVWLGNSRGNAYALKHERMSTDSDKFWDFSFDEFAKYDLPASLEFAMACSKQRHISYIGHSQGTTIGFAAFSQNQTLAAKVDLFIALAPVATVGNMISPIKYLSYFSGGIQWLFWLFGVRDFLPSTFITRSLGRYVCEDDLGSIWCSNIMFLMCGYDKAQLNETRLPVYVAHTPAGTSVKDVVHFAQMYRSAKFQMYDYGWRYKNRIHYGQSTPKQYDVTKIRVPVALFSADNDWLATPKDVSLLVPKLQTLVFRKSLKSWDHLDFIWGMDASTLIYEDIDRLLKKFKRRAKILGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKA0</accession>
    <name>A0A6S7HKA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002618">
        <property type="protein sequence ID" value="CAB3995197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HKA0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="16960" checksum="CAB8BEE3D868CB8E" modified="2020-12-02" version="1">MTKEDDVAKYFPRNWTGRTRVEQHELFDQMLMYLTQHELHKKHVQKIKYEEWMCDALLVMKDCTHFFAEDLYIDILIFYGLPELEYGLKDYNMYCANELVLSRLYAMYEDYYERDVVIDMRMYIGLLIVLQHIKYLLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKU0</accession>
    <name>A0A6S7HKU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005182">
        <property type="protein sequence ID" value="CAB4005386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HKU0"/>
    <dbReference type="OrthoDB" id="5989318at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF1">
        <property type="entry name" value="TELOMERE LENGTH REGULATION PROTEIN TEL2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="531" mass="60116" checksum="284BA5FFA2E4A569" modified="2020-12-02" version="1">MDDDGWQLLPKPAKRLKKLTCFDKCIFCQTGNANLRVAEPSSLEKVVSALKQRQDEVSQRLTPNDLCHVEGKRVLCHSSCYEAFTSKQNLKFSESKTSNNPVDVKVGKRCGTLFDWSRCMFCRNATRKKDRNLINIVTFEACSTIKESVEARVGHQLLDVLQSVNYDLIAAGGKYHKACHASHVSKVNIKRMQHDTSTIDENPFDEAFNQLVKTITTEINKGKAYDMNILLAMFKKELEKLCNAEESYTKQKLKARLVAHYKEDIMFHQPPQQSKPEIVYSSSISLVDIINAAINSPPPDTTSCISKEKMNASTSEFFDIYAVATQVRQEVMKCKGIDINPLDISDLNLDIAKELLPQNLYWLLRWIITGQQYSDRTSSSSARIPADERKIIMVAQDIVHCASHARAKLPKHGARAMSVKHITGSKQLVTLLNRMGHCSSYMEIEQVETGLANESLARSKTSVVIIPTNKNPGVWTTTILMKRRSTGRRQHMQRQWLYTSASSTDPSQHALCTPIIPKRRGRWIQLVIWLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HRE7</accession>
    <name>A0A6S7HRE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060343</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005506">
        <property type="protein sequence ID" value="CAB4006433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HRE7"/>
    <dbReference type="OrthoDB" id="5975103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18079" checksum="59317D0D7CA51381" modified="2020-12-02" version="1">MAGEQDSDEEINRLLENKDAKNTKKSTKFAVRAFHGAIEDLEKAEQNIESLDKSLANFFANAKRKDGTKYKASALQTLRNGLRRHYLDRLGIDIVNDRSFTYSTKVFKASVTDLRRQGLATVQHHIPITKVDMAKLYSGETIVFDIHAPNGLLLEFSSSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXR3</accession>
    <name>A0A6S7HXR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">WD repeat-containing 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062518</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007042">
        <property type="protein sequence ID" value="CAB4011145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXR3"/>
    <dbReference type="OrthoDB" id="10251741at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024977">
        <property type="entry name" value="Apc4-like_WD40_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47822">
        <property type="entry name" value="CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47822:SF2">
        <property type="entry name" value="F-BOX AND WD-40 DOMAIN PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12894">
        <property type="entry name" value="ANAPC4_WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="39770" checksum="B7E4C9CF96CBB22C" modified="2020-12-02" version="1">MFLVQNPPSGPSTPREQFVNDVGHAHRYKANIEGSMKILNRIETDSEIMCCRFNPEGNLLAVGLVNGVTKIYTVEPLSCVYVLPAEDTGGQPLPVTCLRWRPNIENQNFKNILLATYASGSVKIWHVSTMDCLSSTQEGGRQVLACAFNASALQYITAGSDTTINLYDATTRQKLLSLEPSTSFLVMDGHMMRIFSVMYLPNDDHVFLSGGWDDTLQWWDSRVDSRHSIKRIFGPHICGDALDILPSNSNILTGSWRKDNSVQIWDFNSGELIRDVPDDFNRSMTYCTQWLPDGQIIAGGSDMNMLRMLEQSSTSTVTIGRMVDLPRAVYTVDNDRSGPNPRIAVGSSNSIYIVQRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXV1</accession>
    <name>A0A6S7HXV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062959</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006279">
        <property type="protein sequence ID" value="CAB4008943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXV1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15291" checksum="EC2DB866BDDF9313" modified="2020-12-02" version="1">MADEEVFNVENDLPMFLESVLDNVESIFQSDVDLEVAESHAEVIDQSIRLNRSISECADVETQDKMNLNTLSTVFTDVLSLLNHPNAIRSPTTAYENKTEVATEVNGCPRRPRFVIRAEMLEELRELGFSWTKIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I061</accession>
    <name>A0A6S7I061_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Neurofilament triplet H1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004073</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003343">
        <property type="protein sequence ID" value="CAB3998397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I061"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="267"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="35"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="67"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="130"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="183"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="273"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="303"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="354" mass="42581" checksum="D043E2227494A8C3" modified="2020-12-02" version="1">MRSVISHKEKDSRRSRSPRRSPRQSPRQSPRRSPRQSPRQSPRQSPRRSPRQSPRQSPRRSPRRSPRQSPRQSPRQSPCGPPRQSPRGRWSPRDRRYPDRRRSYDRDDRYGRDRYSRDRVRPWRDDSTRFSRRRSPHSRLGRRPSPLRDYRRDINRSRERDRQRDTRFNRPDERPRRRRTHSRSVEEKNDSSDKNNLSRTDDDFVEIDVKQKPDIRESRLKKSGRLGEKRVDANVRHKLGFDLRSRLGPKKSETKLVITKKIRVDAREKQEDGIEVEGEEDEDGIYEDDGEQNGNDDGDEYETSPSLSRTTVVEVQGDKEAELDVRISRIQKMNEEIRKRREEVEREKMLYANF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2I2</accession>
    <name>A0A6S7I2I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038802</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007056">
        <property type="protein sequence ID" value="CAB4011177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2I2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12537" checksum="54AF2CD88B9769C9" modified="2020-12-02" version="1">MLFVPLEQKCRSNNSDFFAARRFLDALLISLQKTIALVTTLFNTSQPKQTLFPIPVDLIIASLTTTQYLQANVLNGVINQGIMLVNGIMQDIRLTIVCSITWHLFVTKHTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IAD4</accession>
    <name>A0A6S7IAD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Synaptosomal-associated 29</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A016530</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SNAP-25 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008795">
        <property type="protein sequence ID" value="CAB4015654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IAD4"/>
    <dbReference type="OrthoDB" id="18679at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098793">
        <property type="term" value="C:presynapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031201">
        <property type="term" value="C:SNARE complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005484">
        <property type="term" value="F:SNAP receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019905">
        <property type="term" value="F:syntaxin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031629">
        <property type="term" value="P:synaptic vesicle fusion to presynaptic active zone membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016082">
        <property type="term" value="P:synaptic vesicle priming"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.110:FF:000041">
        <property type="entry name" value="Synaptosomal-associated protein 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.110">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000727">
        <property type="entry name" value="T_SNARE_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19305">
        <property type="entry name" value="SYNAPTOSOMAL ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19305:SF9">
        <property type="entry name" value="SYNAPTOSOMAL-ASSOCIATED PROTEIN 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00397">
        <property type="entry name" value="t_SNARE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58038">
        <property type="entry name" value="SNARE fusion complex"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50192">
        <property type="entry name" value="T_SNARE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4015654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24583" checksum="DF32AD41B11CF54E" modified="2020-12-02" version="1">MAARNDETTNPFGDDLDDFEYDTALSRLEQTQNRILGSTSRSLGLIEESHDIAIKTAEELQRQEEALYRTERNLDDMSHNMTTANRHIKSVKSVWGAIGNYFSKPIKAEPKLEPVKTEVPERSLNVDVDLKLDYGEQDCLSEYGGRGRGTASFEREYDNHLSEISRGLSILKDDAMVLGQTIDRHDEIITRVQGKVENVDDEIKVADRKIKKILRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKI1</accession>
    <name>A0A6S7IKI1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">Nuclear pore complex protein Nup153</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="19">153 kDa nucleoporin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="18">Nucleoporin Nup153</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">PACLA_8A047924</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="22" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="22">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Nucleus</location>
            <location evidence="3">Nuclear pore complex</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the NUP153 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004592">
        <property type="protein sequence ID" value="CAB4003308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="79830at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031965">
        <property type="term" value="C:nuclear membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005643">
        <property type="term" value="C:nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008139">
        <property type="term" value="F:nuclear localization sequence binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017056">
        <property type="term" value="F:structural constituent of nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051028">
        <property type="term" value="P:mRNA transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006405">
        <property type="term" value="P:RNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.1060.10:FF:000001">
        <property type="entry name" value="Nuclear pore complex protein Nup153"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.10">
        <property type="entry name" value="Zinc finger, RanBP2-type"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026054">
        <property type="entry name" value="Nucleoporin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036443">
        <property type="entry name" value="Znf_RanBP2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23193">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23193:SF23">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00641">
        <property type="entry name" value="Zn_ribbon_RanBP"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00547">
        <property type="entry name" value="ZnF_RBZ"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90209">
        <property type="entry name" value="Ran binding protein zinc finger-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01358">
        <property type="entry name" value="ZF_RANBP2_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50199">
        <property type="entry name" value="ZF_RANBP2_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="14" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0509">mRNA transport</keyword>
    <keyword evidence="13" id="KW-0906">Nuclear pore complex</keyword>
    <keyword evidence="15" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-0653">Protein transport</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="11" id="KW-0811">Translocation</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RanBP2-type" evidence="21">
        <location>
            <begin position="744"/>
            <end position="773"/>
        </location>
    </feature>
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    <sequence length="1506" mass="157797" checksum="F27830B02A7987F7" modified="2020-12-02" version="1">MVDQPNHKSYKIRGHSRQRRSSKPYSRPSEPKNKGLLDKVKDYLSPSWLFGYFTQNEDDFEASNFEDDVSDQNAVVTHEEGSTSSSYVPNQGRLASLGEENDDETLASLELNNDSISADTTDKAQVFDENNGKQDTVEIADSSIRLSGCLNDDIEDENERQIVEQTDRPHQSVSSYSSDQLTRKPLPSLLHSRSSSSSLLLQRGTPSLRSQGNPLLGSMSARSNLYTPSVKLSTPMTTNRASFSSTQKPSSSLTRPLSTRNSSLKDNNLTQGETSTVDATPRFNTSATSLAGTTQPIPTGSSAPLFSVEKFVTPVQRTFTNKRVGSPSYPGPVMFGGALNVSRDVPSKRRRMSSPGSESHHPVSKLRVRGVKEKTIQHSTLGGTGTRTAQRILDALESVSSPLKDVRRIPSPISLASASPLSFMASKTRTTPPKTRVGPRVSYLQAKLLGDPPVSSLQTPEVAKVSFVEDPTSTEPQPSSPPTSPPSKSSKHPVKDQSFFSGLKDTVLKSSLPSSFAPKSLPTSLSPIENTSRSSGKMRAASRSTAMHYSSNKNNPDDEVVNPLPEIRSAVPLPLNPGKNMSLPLFNANKIADDGPNISQRNFNKQKESSAKDKQLTESPKNGFIFSSPAPKSQRFSVKESLEIADDEVSFSFSEPTPVRKSSGATKETFKNPLLQSQKTSNSFKPAVNHSPNQNMKSNSPFSKSPLTNDITFASGKSKAQPADALGKPEPAQTNDFAQRFAPAAGSWECTSCMINNEASAVKCVACETAKPSAGKTRNTGKDKQEIQEINLIAKFAAPKDSWECETCLVRNKSESNKCVACETKRPAASSDDDLKLKFAAPSGSWECPTCMVQNKAADLKCVACETRKPGSSSNDDLRLKFAAPSGSWECQTCMVQNKAGDLKCAACQTSKPGAESAGSTQSGSTLNQTSVTTSGFTFGGNDASKTTTSSGFTFGNSNNTDKTSDPAKTSAFTFGQSSTKSSTANFSFGNNTATTTEASSTFASTSSEGKPASGFTFGGNSSAKLTTTPSFTFGATSNKEQNKPPFSFGADNTSSQNGGQQKEDNNEKVNEKPSTTPTMSIAEAAAAGLLKVPGKDSTTTQPPAQTVATEPATAPTFTFGGAAAPSGGPGEQQASTKTSGLGFTPLASSQVKPFAFQTSTATTTSTKTTTGGLFTFGAQQPTVSTVTSSTANPTSLFSFTGTTPAVPPANTTTTSAGVKNTPFSFTPSNTATSLANATTTVPGLATTNSVPSFNFAGSTGGTLPSAKATLASTQSNPAGMFSFSGSAASDQAKSAAVFNFGAVNGPTSSNGPSVSTTGQAATGLFSFIGTQQPSTTPVVENQNSMGGEEMDADSNNNHDQSTFPQATGGFNFTAPTAGNMSGLFPAGGTSATTGATPGGFNFSANTGVTSTFQFGGNSSTPSGGFNFGAAVQTAGSSPFMFGGASTPASGNTNPTTASFNFGPTSAASKPQLNVGQTTDQPALFNMGAAQTTPRVYRKAVRRTRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IY17</accession>
    <name>A0A6S7IY17_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">methionine synthase</fullName>
            <ecNumber evidence="5">2.1.1.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="17">5-methyltetrahydrofolate--homocysteine methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="16">Vitamin-B12 dependent methionine synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">PACLA_8A069769</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="22" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="22">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 20">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 18">
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-methionine from L-homocysteine (MetH route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the vitamin-B12 dependent methionine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.13" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020006733">
        <property type="protein sequence ID" value="CAB4010272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IY17"/>
    <dbReference type="OrthoDB" id="261426at2759"/>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008705">
        <property type="term" value="F:methionine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050667">
        <property type="term" value="P:homocysteine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
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        <property type="entry name" value="methionine_synthase_B12_BD"/>
        <property type="match status" value="1"/>
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    <dbReference type="CDD" id="cd00740">
        <property type="entry name" value="MeTr"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Methionine synthase"/>
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        <property type="entry name" value="Methionine synthase"/>
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        <property type="entry name" value="Methionine synthase"/>
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        <property type="entry name" value="Methionine synthase"/>
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        <property type="entry name" value="Cobalamin-binding domain"/>
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    <dbReference type="Gene3D" id="1.10.288.10">
        <property type="entry name" value="Cobalamin-dependent Methionine Synthase, domain 2"/>
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        <property type="entry name" value="Dihydropteroate synthase-like"/>
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        <property type="entry name" value="Homocysteine-binding-like domain"/>
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        <property type="entry name" value="Cbl-bd_cap"/>
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        <property type="entry name" value="Cobalamin-bd"/>
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        <property type="entry name" value="Dihydropteroate_synth-like_sf"/>
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        <property type="entry name" value="HCY_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036589">
        <property type="entry name" value="HCY_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050554">
        <property type="entry name" value="Met_Synthase/Corrinoid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033706">
        <property type="entry name" value="Met_synthase_B12-bd"/>
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    <dbReference type="InterPro" id="IPR011822">
        <property type="entry name" value="MetH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036594">
        <property type="entry name" value="Meth_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004223">
        <property type="entry name" value="VitB12-dep_Met_synth_activ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037010">
        <property type="entry name" value="VitB12-dep_Met_synth_activ_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02082">
        <property type="entry name" value="metH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF007024">
        <property type="entry name" value="PRK09490.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45833">
        <property type="entry name" value="METHIONINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45833:SF1">
        <property type="entry name" value="METHIONINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02607">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02965">
        <property type="entry name" value="Met_synt_B12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02574">
        <property type="entry name" value="S-methyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000381">
        <property type="entry name" value="MetH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01018">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="Cobalamin (vitamin B12)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="Dihydropteroate synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82282">
        <property type="entry name" value="Homocysteine S-methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56507">
        <property type="entry name" value="Methionine synthase activation domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47644">
        <property type="entry name" value="Methionine synthase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50974">
        <property type="entry name" value="ADOMET_ACTIVATION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51337">
        <property type="entry name" value="B12_BINDING_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50970">
        <property type="entry name" value="HCY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 18" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="15" id="KW-0170">Cobalt</keyword>
    <keyword evidence="11 18 20" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="6 21" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0677">Repeat</keyword>
    <keyword evidence="10 19" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="9 21" id="KW-0808">Transferase</keyword>
    <keyword evidence="13 18 20" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="18 20">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18 20">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18 20">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="595"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <begin position="671"/>
            <end position="675"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="18">
        <location>
            <position position="674"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
        <ligandPart>
            <name>Co</name>
            <dbReference type="ChEBI" id="CHEBI:27638"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="719"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="723"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="775"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="862"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="1059"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <begin position="1114"/>
            <end position="1115"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="22">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00030163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00031040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR000381-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PIRSR" id="PIRSR000381-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="CAB4010272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1158" mass="129020" checksum="0940D4D5123F33B2" modified="2020-12-02" version="1" fragment="single">VYRLNKESAQLAKKAAQEVETSSGIPRFVAGAIGPTNKTLSLSPSVENPGYRNITFDELVEAYSEQVRGLLDGGSDILLVETVFDTANAKAALFAISTIFESYEPVPVFVSGTIVDKSGRTLSGQTAEGFITSVSHAEPMCLGLNCALGAVEMRPFIESFSMETDRYIICYPNAGLPNTFGGYDELPEMTAAYLKQFVSDGLVNIVGGCCGTTPAHIKAIKEAVTPYKPRVPPKDLHSDALLLSGLERTLVSSDSLFLNIGERCNVAGSRRFAKLIREGQYEEALNVARLQVENGAQVLDINMDEGLLDGVAAMAKFVNLIASEPEIAKVPLCIDSSNFAVIEAGLKCTQGKCIVNSISLKNGKKDFIEKASLIKKYGGAAVIMAFDETGQAADCDRKVEICTRAYHIMVNEVKFNPNDIIFDPNILTVATGIEEHNNYGKYFIEATTFIKTNLPHARVSGGLSNFSFSFRGLDVIREAMHSVFLYHAIKAGLDMAIVNAGNLPVYDDIDKRLLELCEAVLWNTDPNATEKLLQHAQSLGKGAKKQEVSDEWRSGSPEEKLEYALVKGIDKYAVEDVEECRQNFERYPHPLKVIEGPLMKGMSIVGDLFGAGKMFLPQVIKSARVMKKAVAHLVPFIEEEKKGKEQELRAQGLWDENKRFNGTIVIATVKGDVHDIGKNIVGVVLRCNNYRVIDLGVMTPCEKILQTAIDERADIIGLSGLITPSLEEMIHVAKEMERQGFKIPLLIGGATTSKTHTAVRISPRYSEPTIHVLDASKSVVVCGMLLNEEDKEEYCQDITEDYDFLRADHYDSIKDRRYLTLTEARNKKLALDWTTFKSVRPSFLGTEVFDNYEIERIIPYIDWKPFFDVWQLRGKYPNRGYPKIFNDKTVGVEAKRVFDEAQVLLKKIMDEKLFRAVAQLAFYPANSIGDDIYLYRPEDDGCQEVAAVFYGLRQQAEKEPGADDPYACLSDFVAPSETGVRDYVGCFACSCFGAEELVKKYEEAGDDYSSIMVKALADRLAEALAEELHERVRKEFWGYNNEEQLQAKDLHMIKYQGIRPAPGYPSQPDHTEKLTMWNLMDCENQTGIILTESLAMYPASSVCAIYFAHPKSYYFSVGKITKEQVKDYAERKHMGMEEIERWLAPILSYEREEADVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYV7</accession>
    <name>A0A6S7IYV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A023631</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013151">
        <property type="protein sequence ID" value="CAB4024646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYV7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF31">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 6-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="16"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="96"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="341" mass="38857" checksum="080F40DCAECF3D24" modified="2020-12-02" version="1" fragment="single">RGTLSSELGTLSSSDKVSRSKDKVPHSENKVPHTEDKLPHSEDKVPHSDYKVSHSEDKVRHSEEKVPHSEDKVPQCEGQVPHTDEKVAHSENNFRYSEDKAPHSEDKVPFSEGKVPHSEDKVRHSSDKVSHSEDKVPHSEDKVPHSEDKVPHSDYKVSHSEDKVRHSEDKVLHSEDRVPYTDEKVPHSENKFRYSEDKVPHSEDKVPLSEGKVPHSEDKVPHSSDKVSHSEDKVPHSEDKVPHSEDKVPHSEEKVPHSDYKASHSEDKVRHSEDKVSHSEDKVPHSEDKVPHSEDKVPHSEDKVARSEGRFLTLRTRFLTLRTKFLTLRTRLHALKAGSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1I2</accession>
    <name>A0A6S7J1I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Clavaminate synthase At3g21360-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001298</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007104">
        <property type="protein sequence ID" value="CAB4011302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1I2"/>
    <dbReference type="OrthoDB" id="408743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050411">
        <property type="entry name" value="AlphaKG_dependent_hydroxylases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10696">
        <property type="entry name" value="GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10696:SF21">
        <property type="entry name" value="TAUD_TFDA-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="26025" checksum="BB9F9C7A681DEDF2" modified="2020-12-02" version="1">MAFRVPSSVASRAGIFQNIYRLVFNPLSSITRSISVDSRYFIQGTAEDIQLSRPVQLARRKYLPGSFASGFPEQLSSPKEGFPLVLKARNNGELDGKGIQFWSECFKEQLSGLYENFRNGGAPVAVLIRGLPIKTSNDSSRFIEGLGFEFFSYKGGSGIRKQVDDFVLSGALDAPEYSVELHNDMSYSTVFPTKFVITCLKKSKFGGETGICNGRELTSNLDADLKAKFERKGIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJJ0</accession>
    <name>A0A6S7JJJ0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018519">
        <property type="protein sequence ID" value="CAB4032586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJJ0"/>
    <dbReference type="OrthoDB" id="5987697at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF13">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="148"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="37715" checksum="1B13E75DE40E03CD" modified="2020-12-02" version="1">MYLVLFLFLPLYLRCEAVLPPYLPILENNNFERVDLIEQYFHMGLGYSEIVLFLGLLHGYILSIRQLKRILQQRGLGKRRNRSNIEEVYRAIRRELRGSGSMMGYRQMTRRLLHGHGVVVDKETVRELLKILDPEGVDASSLQRFFNNDEQSFLYGKSCYNQRIEAFWGMLRRGCVDWWINFFKDLRDSGLFCDTDDIQVECLTFYFTSMIRDELHRFAMEWNLHRIRKSVNAESPSGQPDVIYFLSSRTDDARDLITPVSDEDIEIAQQRCCVQTPEHGCSEEFVELASIIMLEKHLEMPTNSEDAVILYSTIVEEIGQIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQ96</accession>
    <name>A0A6S7JQ96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088854</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the caprin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010118">
        <property type="protein sequence ID" value="CAB4018672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQ96"/>
    <dbReference type="OrthoDB" id="10062814at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028816">
        <property type="entry name" value="Caprin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041637">
        <property type="entry name" value="Caprin-1_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22922:SF19">
        <property type="entry name" value="CAPRIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22922">
        <property type="entry name" value="GPI-ANCHORED PROTEIN P137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18293">
        <property type="entry name" value="Caprin-1_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16273" checksum="A154788114116829" modified="2020-12-02" version="1" fragment="single">MPVASLRSNQVASNDNMDSSKALIGMIDKKVRNLEKRKGKLDSYKQLAADGKELNDDQQAAVENLTSVELNLEFAKDLQKQFNQFALEQAKLQKKQAKKEEALRQANRRDADLAMIKNVLELQNLLNQLSDEAREDFIKGANGAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JU27</accession>
    <name>A0A6S7JU27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020750">
        <property type="protein sequence ID" value="CAB4035137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="626167at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098">
        <property type="entry name" value="RAPSYN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098:SF108">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="15"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13176">
        <property type="entry name" value="TPR_7"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="34"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="28"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1368"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1368" mass="148120" checksum="4150A3318C9C95FD" modified="2020-12-02" version="1" fragment="single">MIKSNRNLGDTYHTLGEYHKAIDYYKKGLEISTAIGDRSGIARSNGNLGNAYNSLGENQMAIDYYKKDLEISAAIGDRSGIARSNGNLGNAYNSLGEYQTAIDYYKKDLEISTAIGDRSGIARSNGNLGNAHNCLGKYQTAIDYHKNDLEISTAIGDRSGIARSNGNLGNAYDSLGEYRTAIDYYKKDLENSTAVGNRSGIARSNCNLGNAYNSLGEYQKAIDYQTKSLEISTAIGHRSIIARSNGNLGNAYYNLGEYQKAIDFHKKDLEISTAVANRSGIARSNGNLGNAYDSLGEYQTAIDYHKKDLEISTAIGNRSGIARSNCNLGNAYNSLGEYQKAIDYQTKSLEISTAIGHRSIIARSNGNLGNAYYNLGEYQKAIDFHKKDLEISTAVANRSGIARSNGNLGNAYDSLGEYQTAIDYHKKDLEISTAIGNRSGIARSNCNLGNAYNSLGEYQKAIDYQTKSLEISTAIGHRSIIARSNGNLGNAYYNLGEYQKAIDFHKNDLEISTAVANRSGIARSNCNLGNAYNSLGEYERTIEYHKKDLEISTAIGNRSGIARSNCNLGNAYYSLGEYQKAIDYQTKSMEINTVIGDRSGIAKTNCNLGVAYYNLGEYQKAIDYHKKHLEISTAIGDRSEMARSNGNFGNAYNMLGEYQTAIDYHKKYLEISTAIGDLSGIARSNCNLGNAYNSLGEYQKAIDYQTKSLEISTAIGDRSGIARSNGNLGNAYNSLGEYQKAIHYQTKSQQISTAIGDRSGIARSNGNLGIAYNSLGEYQKAIDYQTKSLEISTALNDRSEMAKRNCNLGNVYYNSGKYQKAIDYHKKHLELSTAIGDQSGIAGSSGNLGNAYNRLGEYETAIDYHKKDVEISTAIGDRSGIAQSSGNLGNVYDSLGEYETAIDYHKKDLEISTAIGDRSGIARSKGNLGNAYNNLGERQTAIYHHKKDLEISTAIGERSGIARSNGNLGNAYRNLGEYQKAIDYQTKSLEISTAIGDRSGIEISNGNLGNAYHSLGEYLKAIDYQTKCLEISTAIGRRSIIARSNGNLGNAYDNLGEYQKAIDYHNKGLEISTAIGDRSGIARSNGNLGNVYHSLGDYQKAIDYGTKSLEISTAIGDRSGIATSNGSLGNAYHNLGEYLKAIDYLKKDLEISTAIDDRSGIAKSSGNLGNVYHSLGDYQKAIDYGTKSLEISTAIGDRSGIATSNGSLGNAYHNLGEYLKAIDYLKKDLEISTAIDDRSGIAKSSGNLGNVYHSLGDYQKAIDYGTKSLEISTAIGDRSGIATSNGSLGNAYHNLGEYLKAIDYLKKDLEISTAIDDRSGIAKSSGNLGNVYHSLGDYQKAIDYGTKSLEISTAIGDRSGIATSNGSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZY2</accession>
    <name>A0A6S7JZY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087189</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024378">
        <property type="protein sequence ID" value="CAB4038595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZY2"/>
    <dbReference type="OrthoDB" id="10033767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="30622" checksum="099E66813F605FF0" modified="2020-12-02" version="1">MLISVHVTHQCKVLVKWTIVEADEGNIGLTFSQIFDDLKAGHIDGVGPWPWLNICELVEPFDSAVAQLGSILSGYAAYLDERNKAMIKRHFSSTPVRSLSSSESIHFLNKPMYVDESLSKLGSAVEQSEDFVPVVVSEFCPPDRRKRYLFTQQLKKGLSSNANIVLYQYSAGGNAGNANFVWKVPNHCSAEDLANRNMQVVRDIEKDIPMYQTRFARREFCETFGKFSGTPSHILREMFKQLTGDKSASEYLSEAQIDERVKTAILSEDNEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4U0</accession>
    <name>A0A6S7K4U0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064379</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022469">
        <property type="protein sequence ID" value="CAB4036840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4U0"/>
    <dbReference type="OrthoDB" id="6082640at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="10633" checksum="66E644EC77AA993B" modified="2020-12-02" version="1" fragment="single">PKHSLLMFRGKIFEWGFGTPKSYRMDRNPAQCSISWEFDSKGMSKCRLDQIELWTQNYPNLHGGYQVTTNNCHYFVNRLMEHLKTNCVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCV8</accession>
    <name>A0A6S7KCV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026657</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030565">
        <property type="protein sequence ID" value="CAB4042657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCV8"/>
    <dbReference type="OrthoDB" id="10062389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="598" mass="67918" checksum="6159EB2C947B8EEC" modified="2020-12-02" version="1">MWNSINGILKRDKKSSSPRSIKEDGVEIKDSHGIAESFCRYFANITSEFMVKTPIPKTSFHKLKKFIESKCLSDTKFSIPTVDIDFVKSQLLKFETNAAVGLDYLGAKILGCAAPVIAPHITRIINLSISMSSVPLCWKRARVTPIFKGGDFTDRSCYSPISVLPLLSKVLERHVSEKLYSYLTVNQLISNNQSGFRKNHSCQSLLIKLPDFLLHNMDQGKFSGLTMLDLRKAFDLVDHSLLLQKLHLYGLDDQALSWFTSYLKDREFKVKIENELSSKASIKSSVPQGSILGPLLFIIHMNDLPLHLNGTQIDMFADDSTQYVSGCSVQGVQEQLSTEMLPIIQWTETNKMVPNEQKTKAMFIASTKKVSEIPQDLNITINDFQIETVLDGRLLGIQFDQTLSWSVHIGLLCKKISQRLGILRRIRHHLPLNARKAFYRCLILSLMDYCCVIWGNTSTQNLDRLHRLQKRAARLILDRDHKAPSLPLFLELGWLPVHERIRYFRASTVYKALNNLSPSYITSLLLPFSKVHNVNTRGSTNNNLKLPKVNSNAGKRTFVFLAANEWNLLPDSVRCSTSFSSFRKNYINLAFSKLKDNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQH2</accession>
    <name>A0A6S7KQH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016810">
        <property type="protein sequence ID" value="CAB4030363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQH2"/>
    <dbReference type="OrthoDB" id="5987510at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424">
        <property type="entry name" value="PROTEIN CBG23806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="413" mass="48275" checksum="C058EB942FBF1CDD" modified="2020-12-02" version="1">MTRNTNFVILSFGVVDSKSDNVLSAKGNHSLGVVKGNESYELLNQAFGDIFNQINHLNKLKHIKVGEKIVNLEIFFGGDYKFLLLVFGLQNATSNYSCLWCKVHKDKRWDMSHDISYYTSVQLKRSIKDIHDLAGKSKNNYCCVARPLVEIDLDHVICDELHLMLRVVDVLIDNLMEDVLEWDKTEDMCKKRSDERGIHLNNLISTIRSCGVSFNIWQKKSAEGNASGKYECTSLLSHDKKILLQQLPRKLSTAIQEDSCSEVIQIWQDFYELYKTINKEHLSEEEINNYFDKAKAWVKLFISLSPKRKGYNKSRVTPYLHIMVYHVPQFLRLFKTMRIFSGQGVEKNNDVARSTVLRKSNKLDSTSDVLKLEFRQRQLREQERNKRTYEKVDGSYWESEIFKKRQKRRLDHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L090</accession>
    <name>A0A6S7L090_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HMG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A037174</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019042">
        <property type="protein sequence ID" value="CAB4033203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L090"/>
    <dbReference type="OrthoDB" id="8948380at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039598">
        <property type="entry name" value="HMGXB3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040648">
        <property type="entry name" value="HMGXB3_CxC4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17609">
        <property type="entry name" value="HMG DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17609:SF3">
        <property type="entry name" value="SAP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18717">
        <property type="entry name" value="CxC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMG" evidence="2">
        <location>
            <begin position="252"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="188"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="194"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4033203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="40268" checksum="4DD9884166452211" modified="2020-12-02" version="1" fragment="single">MSQRGRGSCPNCKAQYFNRYKPSKCGMCGYALGGTFEPSTKKVKYSPKAVEISKGVYSVTTSTRDDRCFVTTDGNLWFCSLEECKIARSVQHNSSRLAEFSCRHIDEVKFCDKSPPVAILKPDLDNFVCSETLRNSIQDVLNVAGSMPMASAAVQVSDAMFCAFGPITATILHSCFVTNTLDTTGDTNNATFEAESSTEPGPTVNSSELTKRLSTLSLAEKVKILPYILPHDLLQSVAKRDACTLLGVGEMWPNSFIPDLENCQLCGSVLGDTCIHPGQSQNNPCYLLTELNPFKQVDIKVKFCSSRDCYAMHQASVEKLGLFNISDKVLVSLDILLEFREFFKMGHPIGNVIHAKLITLTAKCEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L1S4</accession>
    <name>A0A6S7L1S4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074479</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018355">
        <property type="protein sequence ID" value="CAB4032382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L1S4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053251">
        <property type="entry name" value="N-glycanase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39319">
        <property type="entry name" value="SI:DKEY-256H2.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39319:SF1">
        <property type="entry name" value="SI:DKEY-256H2.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14676" checksum="28C5F1EB01C165DB" modified="2020-12-02" version="1" fragment="single">MQGFRLFIFIILFLRSVCCFPQYKPGDLAPSFVIQTESGKFVYKEKASNDSKNSNPIIFCAFNKHSAFLRALWTEEGSVRRLLERSPRNTRYVFLSLSENAKHDVEYMQKKIFGEMTKLYNEKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L2C3</accession>
    <name>A0A6S7L2C3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014833</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014289">
        <property type="protein sequence ID" value="CAB4026589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L2C3"/>
    <dbReference type="OrthoDB" id="5965755at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="288" mass="32348" checksum="9C8943B5F3C33695" modified="2020-12-02" version="1" fragment="single">MSKQDPKIYVSSPTNLHVGIGGLVALQTARGVLRGEREAKVRVLFDAGSHRFFVTSKAASLVDPKGLRRDLLGINMFGQKCTRSEQRDVVELKLKPLHGDKVISVEAYVVPEISSIQNAHIELARKDYQHLKGTWFSDVCSQEVLEIDVLIGADYLWQFQTGVTRRGRPEDPVAVETELGWVLSGPLRARDIERVGVAQVNFVAQIGNQEWNNDSLESNVQRLWSLEGLGIIDKDGVHEEFLDGVTFTGSRYSVKLPWKEGHDKLSDNYGNSLARMKSQLRRLKKEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LLE9</accession>
    <name>A0A6S7LLE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030748</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019960">
        <property type="protein sequence ID" value="CAB4034249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LLE9"/>
    <dbReference type="OrthoDB" id="5970753at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="19601" checksum="E515B6824B8D22D4" modified="2020-12-02" version="1">MIDKIHSGKSYHIQGLTVRIFDDIKFLNTNEATVVSEIDDLGDVNLMSQEIQDNIITAHCIGVNIKKSTSCIACNNSLENITPEEETITCPNCKLTTFITISKTKLVCQILLKIDDKMTSYTTFNDEISSFLRIIGNETPVSEIPVMELKKLLLKAGPKKMIIDRSQKLIFQYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LU25</accession>
    <name>A0A6S7LU25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">E3 ubiquitin- ligase RNF213</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A042332</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032514">
        <property type="protein sequence ID" value="CAB4043499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LU25"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="336"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="12"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4043499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="630" mass="73432" checksum="6B32F0CD1924E17D" modified="2020-12-02" version="1">MQRGIRNHESAKNNQTEQVQGRNGCPKPEKNISRTISDVTSGRYNPSPSYNLRSRPNAPHSTLVDFYVYVHGDQPVDDVYLLFSHEEPILLRRVGSDIRLWHYQLPLRCDLKKEYVEYFYRILIKGHDSTVPVFGRWLSKDATFMDEISERNIKSNKQYDVFHFSQDRRYYQETVPQSVIFYIKWLLHSVDMSNISQILQQVEEMRFDFTAKHVRDFIAWIVEQVIGPSVTDIQRLYLCLILGLLFQNCSRHFRFPNDSNSKQACDRLLECFSARVHSSFLSPSNLKILEKLANTLVQNCSCPGWLNLAATFYPYLGVRYVLQKKHDSGLKYKYDIKEYHKLMDTLLKNIDNTEQEENEHQSLLQAVLEIAPSNDVVVQLFDGPDTGRFFADEAGKEDFFVKFYQDSHHSGRRRGVGEKVVELLKIPQKLREKLYRLVNSCLLDFVSSDEEVKEEHIKAFIDLIILHNSLQQSQVVDLLIEISRSKSVRRHGLLLRILHTSCFRADWHNTAMAHKVKICSTWVNTKVVNETRMNSGVDKTTAVYHGIEELMRCSLNKSNNKLAEEVSKTVVENILRNEESLSILKAFVKIDKYSTVVQDCYKTHVKEILGRDRRLMRKSVKILEEYSSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUA1</accession>
    <name>A0A6S7LUA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A024536</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033290">
        <property type="protein sequence ID" value="CAB4043829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUA1"/>
    <dbReference type="OrthoDB" id="5971692at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027805">
        <property type="entry name" value="Transposase_HTH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF144">
        <property type="entry name" value="SPINDLE AND KINETOCHORE ASSOCIATED COMPLEX SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13613">
        <property type="entry name" value="HTH_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase Helix-turn-helix" evidence="4">
        <location>
            <begin position="161"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="DDE Tnp4" evidence="3">
        <location>
            <begin position="236"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4043829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="331" mass="38040" checksum="5E3823F44F19FE0D" modified="2020-12-02" version="1" fragment="single">REAGRSGVGRISTGSRFLNLTISSGNCSEIAIPVPFNRLALRIRYSKLLLSMTRLFNAEFCSSTFANLSFVSDVSTSAYAYSKDSFTSFSRQINNNESSHSDSIWSEKVEFGRKTADRRPLFQGLQLAHNRFEHIFDIHRLFFVTGFLGVFDGVFVEICAEFVLTLMKLRLNMPFEDLAYRFGISVPTVSRIFLSWMIVMDVRLSPLIKWPEREDLWRTMPQCFQFSFGHKTTVIIDCFEVFIDRPSNLLARAQTYSSYKSHNTVKVLIGITPQGTISFGKDTIERNLTLEDDNMWKNHCFHNGYFNAIDIITTWISRVCCKIKIMPNVIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LV79</accession>
    <name>A0A6S7LV79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043622">
        <property type="protein sequence ID" value="CAB4045942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LV79"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="92"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14369" checksum="F3F0E83C6568316B" modified="2020-12-02" version="1">MATGRHAAKPTAHKLNNSSTSSPSKATKAKDLKHNDDKNKEDEIETEEQVELKDIMVMMKNMMRKLEKLDLIETKVKSVEQELRSMKDSIEFAHSEVKDLKSDNEERKKTGRANETTNRKIGERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6M1</accession>
    <name>A0A7D9D6M1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032343</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000084">
        <property type="protein sequence ID" value="CAB3978037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6M1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="21265" checksum="971192EFE4E1D0F9" modified="2020-12-02" version="1">MTMSIAGGQTNQYLTNPSYLAGLLSSTMTMSIAGGQTNQYLTNPSYLAGLLSSTMTMSIAGGQTNQYLTNPSYLAGLPSGTMTMSIAGGQTNQHKNLSYFVATVNTISASDYNPAEESCTEEFSNLNYHEDIANASDVLYPLYQRDTYLSATYSCNLRGGMYSSSNDPNLSWSVLENKLALISRAPEVHLVTAFLHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8S5</accession>
    <name>A0A7D9D8S5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tyrosinase-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A011201</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000129">
        <property type="protein sequence ID" value="CAB3978633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8S5"/>
    <dbReference type="OrthoDB" id="6132182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1280.10">
        <property type="entry name" value="Di-copper center containing domain from catechol oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008922">
        <property type="entry name" value="Di-copper_centre_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050316">
        <property type="entry name" value="Tyrosinase/Hemocyanin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002227">
        <property type="entry name" value="Tyrosinase_Cu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11474">
        <property type="entry name" value="TYROSINASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11474:SF126">
        <property type="entry name" value="TYROSINASE-LIKE PROTEIN TYR-1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00264">
        <property type="entry name" value="Tyrosinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00092">
        <property type="entry name" value="TYROSINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48056">
        <property type="entry name" value="Di-copper centre-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0186">Copper</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="479" mass="55044" checksum="9652E5E8AD7B131D" modified="2020-12-02" version="1">MHRYTKGQSSLSSGLEYMFDDLIFNSTKGARLNARKAVIVFSENQLDVDQKIYWDNLSNQLGVEIVFIGVQKQTGAQSLRVTGILSLMYMENVNTLKEIGKLLGTEIPPQCQTGKVVYDHCRRRCKCVNGKLVNCCRVRTQFTEMTEEERARYIQVIKTASTNPLFKKRYEAFLTVHKTIFRTGIHQATFFLPWHRWYILQYENLLREIDCSITVPYWESAEEANDALASDMWITGDHGFGGNGTGSSSCVQDGPFRAEVWSVIESAGGGCLTRNFNGRFPDCITVMEALLEFSNVSSFEDFEYFLHREFHDAVHCVIGGQMCTDNSASAPEFFLHHGFVDKLWSDWQRQSKEHTKNEHFTSQTVMMPATNHLPKDLLNVREQPGCVCVQYRDPGDEIYQTLLAFSKKQIEDLPRVQLPPYPARARKLFDVTEKDIQQMEKIRSFLQPVNVLREEELTGQDRILGFKKEDLAKEWARGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLN5</accession>
    <name>A0A7D9DLN5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Myosin-2 heavy chain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001231">
        <property type="protein sequence ID" value="CAB3987767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="439917at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.10">
        <property type="entry name" value="Tumor Necrosis Factor Receptor, subunit A, domain 2"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006150">
        <property type="entry name" value="Cys_repeat_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46104:SF1">
        <property type="entry name" value="GENE 9195-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46104">
        <property type="entry name" value="GENE 9195-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="17"/>
    </dbReference>
    <dbReference type="SMART" id="SM01411">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="61"/>
    </dbReference>
    <dbReference type="SMART" id="SM00289">
        <property type="entry name" value="WR1"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="15"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="3363" mass="354189" checksum="8EBD89DDF1ADBEE8" modified="2020-12-02" version="1" fragment="single">MQSAVQCLNGTYSNETKSTECKTCPAGFSCPNVDETPVECKNGYYSLGATTQCLICPHGHSCFDGSKPPSICLKGTYSTAGKTACTNCSKGFKCPSDGMDTQTACGNATYADQPMSVECKTCPAGYACPRSDQDPVECKNGTYSLEGSSECDICSAGHSCSDSSKPPNICLKGTYSTAGTYSTAGKTACTNCSKGFKCPSDGMDTQTACGNATYADQPMSVECKTCPAGYACPRSDQDPVECKNGTYSLEGSSECDICPAGHSVAKSAVVHIRTNRSGLLRVCEHCEGADAVPIVQNLPSICLKGTYSTAGKTACTNCSKGFKCPSDGMDTQTACGNATYADQPMSVECKTCPAGYACPRSDQDPVQCTNGKYSLGGSSECDICLAGHSCLNKSISPVACTPGTYSNTGETKCNNCTKGFKCPLNKMQSAVQCLNGTYSNETKSTECKTCPAGFSCPNTDETPVECKNGYYSLGATTQCMICPHGHSCLNKSISPVACTPGTHSSTGETKCNDCIKGYKCPFNKMQSALQCLNGTYSNETKSTECKTCPAGFSCPNVDETPVECKNGYYSLGATSQCLICPHGHSCLNKSIIPVACSPGTYSNTGETKCNNCSKGYKCPFNKMQSALQCLNGTYSNETKSTECKTCPAGFSCPNVDETPVECKNGYYSLGATTQCLICPHGHSCLNKSISPVACTPGTYSNTGETKCNNCTKGYKCPFNKMLSALQCLNGTYSNETKSTECKTCPAGFSCPNVDETPVECKNGYYSLGATTQCLICPHGHSCLNKSISPVACTPGTHSNTGETKCNNCTKGYKCPFNKMLSAIQCLNGTYSNETKSTECKTCPAGFSCPNVDETPVECKNGYYSLGATTQCLICPHGHSCLNKSISPVVCTPGTYSNTGETKCNNCTKGYKCPFNKMLSAIQCLNGTYSNETKSTECKTCPAGFSCRNVDETPVECKNGFYSLGATTQCLICPHGHSCLNKSISPVACTPGTYSNTGETKCNNCTKGYKCPFNKMLSAIQCLNGTYSNETKSTECKTCPAGFSCPNVDETPVECKNGYYSLGATTQCLICPHGHSCLNKSISPVPCTPGTYSNTGETKCNNCTKGYKCPFNKMLSAIQCLNGTYSNETKSTECKTCPAGFSCPNGDDTPVKCKNGYYSLGATTQCLICPHGHSCLNKSISPVACTPGTYSNTGETKCNNCTKGYKCPFNKMQSALQCLNGTYSNETKSTECKTCPAGFSCPNTDETPVECKNGYYSLGATSQCLICPHGHSCSNKSAPPSPCQPGEFSASGTSQCENCSKGFMCPDAKMHSPLPCVNGTFANETKSIICEICPAGYTCLDPRETPNKCGEGYYSSGGITRCVICPAGHRCVDASAPEKCQNGSYAKAGSASCKDCPLGFQCPDDGMESPLACGNGTYANTTGLSGCQTCPAGYRCGDPRLTPTPCDDGFYSGAGAVYCLECPAGYSCIQKDNPVDCGQGRYSKSGYMTCEPCPVGSYCPLLRTESPWPCSKGFYSINNGSSKCIECERGNRCPNPSASPIPCNAGYYSDARGSIGCQNCPPGFYNTKQGQIKCESCPAGSRCPNKTQGPIPCSFGQYSPEASQECFACPVGFACTSPDVPPKRCQAGKFSNGTACVSCFTGYYCPSMTIQPLPCVNGTYSDKRGAVACDICPAGYSCFNVSDPPKECNKGEYSIAGDAACKDCTRGYYSMARASVCLPCPAGQKCREGSKMISPEDCLAGTYSREGEDFCQACLIGTWSGNASSTCLPCSIGFTCDDPSDPTPCISGTYWSNVGTIPKCISCPAGYECINVTQLPVPCEPGSYSLEGNSSCVLCSPGEACPDPATLPIHCPVGTYSTSGSTSCSECPAGYSCPKPSTGITPCPGGSYSLIGDANCTLCPAGYACPTTTETPFRCQLGQTTNGNKGSTNCTKCPAGFQCPQPEDTMQECSTGYYSLGFSVTCFICPAGSKCPAKNQQPENCSPGEYSLSGWENCTSCPPGEACPSLTTNSVNFMCRKGTYSTGGAQYCTACPAGKYCPSTTNSTEIPCSPGSFSYGGVAVCLTCPSGWKCPNTDGSGNARCLPGTYSLGNQTKCTDCPPGYACPSIYTDDKKSCEAGTYSAGKQTLCTVCQPGFKCPYPDRNTMTECKDGSYSIGGKPNCTECPAGFACPSKTDDLQIPCYPGSYTLDKARTCSLCPPGQFCPNVSSIPIDCADGSYSLGSVTACISCPAGFYCDVKYSAPRPCQPGKYSNKSATECSDCSPGYVCAEGSSSAKPGSGMCPSGYYCPDGLKKEPCPAGTYGNTSVAKSEQEGCQSCPPGFFCPQGTSGYPTASIRCPPGHYCELKTETQFQFPCPDGMYNNKWGLERENQCSECNAGYTCTGGDPGGDKLCPHGHYCFRGKTQCPTGEGTGTGNISPCKCPGGTFTEQQGATQKSQCKTCPVGYYCHSGTAEPQACPPGTFNNMPGLSADCRPCFAGMACPLYGLSWPTLTCNAGYYCPQGSSSPNATLNACPAGTYTDYHNLTHSRECTPCPAGQACEAGTGGRQKPPQLCARGHYCPMGTRKPTQYPCTAGSWGNLTNLEKQADCYQCPKGWYCLEGSDKPTDLCETGHFCPRGTRYGTEFPCSAGTFSNRTGNVRWEVCDDCPQGHYCPAGTSVPKKCPRGSYLEEIRARIVSECKTCPAGYVCAESGTIYHEQCGRGNYSSPGAYVCITCEVGFYCADDATSRTVMLNKMICPAGMHCPAGSEIAPDLVKNACKKGHYCLKGNENAYEIPCPNGTFNSFTGRKHVSDCQQCPEGYFCERQGLEKVEGDCPPGHYCPFGTAYRNSFPCPIGFYRSASSAISEMDCSVCIAGYYCESKGLPLSEPCPVGYFCPTGSTRPQPCPNGYYGNSSHVKRSEDCAPCPAGEFCAGFGLTKPTGLCDAGFYCRGKAFTSAPPDGPTGGLCPAGGYCPEGAKTPQSCPVGTYRKSKGASSPADCQACDPGYYCAGDDNPKTTGKCSAGYYCTGSSATPTQFPALHGHYAEEGSPYMVKCPIGTFQSSDRMAKCDTCIAKKYCNASGLINPPLCPTGYYCPTNSTLPTPCPAGTYNPNSAEDSEKACQLCDAGKYCRREGLAADEGDCYAGYYCVRGSPHPNPGNLTNGLWNGNFSYGGVCPAGYYCPAGTSRAYNTPCENGTYNAYPGGKSITDCTPCDGGRVCNGKGLSAPNGECRAGWYCEKGAKSSTPNDGTTGDLCTVGHYCPNGTSKPQQCKPGTYSDSRGLAVCTICPEGRYCNDSVNPQPCPKGHYCPNGSHDHNWKKCPPGTWNPSTEIGREDECQQCSPGKYCRNYGVLDFTSGDGSGSCYPGYYCKSGVNTPTPSANFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EB59</accession>
    <name>A0A7D9EB59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004799">
        <property type="protein sequence ID" value="CAB4004068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EB59"/>
    <dbReference type="OrthoDB" id="207378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052728">
        <property type="entry name" value="O2_lipid_transport_reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11161">
        <property type="entry name" value="O-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11161:SF0">
        <property type="entry name" value="O-ACYLTRANSFERASE LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22987" checksum="C71790D6C384480A" modified="2020-12-02" version="1">MEEFNYLYVKPYCRIHSYLVGLVIGYLMHRRAFRAKQLSWPLAVIFWFITVAIALSVTFGPFTAFHEDARPWTMSEKILYNTTRHLAWGIVLAWVTYACEYGYGGYVQDFLSARFWIPLGRLTYSTYLVHCVLINVMYFGYRSGLLFSTQWWAYIYCAALLLSHGFAFILVITVEYPCANLEKLLFRKENRKDQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBL6</accession>
    <name>A0A7D9EBL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Glycogen synthase kinase-3 beta-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A009942</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005171">
        <property type="protein sequence ID" value="CAB4005352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBL6"/>
    <dbReference type="OrthoDB" id="272141at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090090">
        <property type="term" value="P:negative regulation of canonical Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032436">
        <property type="term" value="P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070507">
        <property type="term" value="P:regulation of microtubule cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050591">
        <property type="entry name" value="GSK-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24057">
        <property type="entry name" value="GLYCOGEN SYNTHASE KINASE-3 ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24057:SF0">
        <property type="entry name" value="PROTEIN KINASE SHAGGY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="100"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4005352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="15484" checksum="F31F3E76DAACE53E" modified="2020-12-02" version="1">MNPHYTEFKFPQIKPHPWSKVFRPRVPPEATLLCSKLLEYTPSRRLSPVEACAHNFFAELRDANTRLPNGRELPPLFNFSSAELAIKPALNATLIPSHAKNTSAATNSSTDSPTSSPSTSSTALMDGGIQCNNKFSNNQSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEC9</accession>
    <name>A0A7D9EEC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">26S proteasome regulatory subunit 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A069278</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005723">
        <property type="protein sequence ID" value="CAB4007190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEC9"/>
    <dbReference type="OrthoDB" id="1154031at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19502">
        <property type="entry name" value="RecA-like_PAN_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000030">
        <property type="entry name" value="26S protease regulatory subunit 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050221">
        <property type="entry name" value="26S_Proteasome_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032501">
        <property type="entry name" value="Prot_ATP_ID_OB_2nd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23073">
        <property type="entry name" value="26S PROTEASOME REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16450">
        <property type="entry name" value="Prot_ATP_ID_OB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8" id="KW-0647">Proteasome</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="7">
        <location>
            <begin position="99"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4007190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="313" mass="34628" checksum="C1A874B11DA30EF2" modified="2020-12-02" version="1" fragment="single">MLLGLVHPEGKFVVDLDKAIDMNDVTANSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFEALGIDQPKGVLLYGPPGTGKTLLARAVAHHTACTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDAALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKEVCLENIKNVVFHILLYISRGSYSHPAISKLVHRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEG9</accession>
    <name>A0A7D9EEG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021633</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005164">
        <property type="protein sequence ID" value="CAB4005332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEG9"/>
    <dbReference type="OrthoDB" id="5964945at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="27312" checksum="7147853E91C03414" modified="2020-12-02" version="1">MTPLYKLLRKGTPWKWSKTEQEAFTTIKSALCSDSILRHYDPAAELVHQCDASSIGVGAVLLQPGHDGALQPVAYASRTLNAAEKNYAQIERESLAIVFGVTKFRQYLLGRHFKLLTDHKPLITLLGEHKSFPQLASARIKRWSLLLAAYNYTIEFISGKENVYADFLSRKPINIQTTPEEQVEVRVMFIQGEQIVNSTMVAMETKKDPVLSKVLDFTKNGWPEKPQPELQPSQVEDLGKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EG35</accession>
    <name>A0A7D9EG35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006530">
        <property type="protein sequence ID" value="CAB4009663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EG35"/>
    <dbReference type="OrthoDB" id="445357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003034">
        <property type="entry name" value="SAP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35558:SF1">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35558">
        <property type="entry name" value="SGNH_HYDRO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50800">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="288" mass="31048" checksum="C920D1B05E110DA5" modified="2020-12-02" version="1">MPRQQRNGTNQRRQTRSGTGDDDSIASLRRRCEEEGISNGGRRQTLIARLQQHTTGNVPSATPSTSVETSTVSSTLATQSPALLTDAQLAQIRSIVSESIERSASEIATNAARAAVQAMTLSTAQSHPAVLTEILSASSDVLRSQPSAVPDVSTVDLTQFAQAEPATPYVHGAHDIPASYVKQIQSGEFFDLSKLLPSSFPTAADDEPVVFTLENSVLKVKKSPATQKITSIEQWTTAFTSYMRVLTHKFPTRSQDLLQYLSLIRHAAQTHQGLGGASTTTNFAEKLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EL13</accession>
    <name>A0A7D9EL13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">LIM domain kinase 1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A056441</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006820">
        <property type="protein sequence ID" value="CAB4010532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EL13"/>
    <dbReference type="OrthoDB" id="20134at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.110.10">
        <property type="entry name" value="Cysteine Rich Protein"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050453">
        <property type="entry name" value="LIM_Homeobox_TF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001781">
        <property type="entry name" value="Znf_LIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24208:SF166">
        <property type="entry name" value="LIM HOMEOBOX TRANSCRIPTION FACTOR 1 ALPHA, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24208">
        <property type="entry name" value="LIM/HOMEOBOX PROTEIN LHX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00412">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00132">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00478">
        <property type="entry name" value="LIM_DOMAIN_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50023">
        <property type="entry name" value="LIM_DOMAIN_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0371">Homeobox</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0440">LIM domain</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="LIM zinc-binding" evidence="8">
        <location>
            <begin position="7"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="domain" description="LIM zinc-binding" evidence="8">
        <location>
            <begin position="66"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4010532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16396" checksum="4B08B1EB8F1D16A8" modified="2020-12-02" version="1" fragment="single">MSAMEAVNCSGCKFPIQKDVHSALGLKWHRNCFRCSECLSTIPLHYMPRDNVLYCKKDYILKFGEHCQRCVKQITGPVMVAGEQKYHTECFVCTKCLKFIGYGDEYMLVERHNLYCNDCYKHSILPAISTPSVDRQVWLRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESG5</accession>
    <name>A0A7D9ESG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062652</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008380">
        <property type="protein sequence ID" value="CAB4014623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESG5"/>
    <dbReference type="OrthoDB" id="5984809at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="548" mass="61606" checksum="E3D1526C8A550284" modified="2020-12-02" version="1">MSRKQKRTKWTEEMNRDVLECKERAQELKSSENPSLNVNKSTGSKIGYIQLMKQLWEERGYASLGLTGQNLRDRASKLQKIQVLPTFGCDNESYKTQEGEIAEVSGGINELRPESNLHNITIEQVPEELRNDEESSSRNLLPNLPEINVLPSQIKEKMRGEITHRELCCEVGEIYDEIVHFRRNIFKIPSGRAGKDYITELTYWLKQFNSNAELNSIALKVFMILPSLILQKPSAKSKSKEHSSAIDRRLLLWRQGDVSLLMKEVRFIQKKFKSSRKARSMEDVSKTFAKLVMQGKITAAIKMLDKESSSGLCNLSPEVIKELKQKHPTAAEVQEGSLLYGPMDYVPPNTFDLIDEQTIYNAALKTKGSAGPSGMDAELYRRIVCSKSFKTEGKLLREEIAIMTRNLLKSSYHPSLLEAFTSCRLIPLDKNPGIRPIGVGEVLRRIIGKTVSAFFKEELKQAAGPLQVCAGHNAGAEAAIHAMSEIFAEAETDGILLIDASNAFNQMNRSVAMHNIQITCNEISQYLINTYRSPSRLFICGGGEILSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8D1</accession>
    <name>A0A7D9H8D1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">G- coupled receptor Mth2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A054318</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the G-protein coupled receptor Fz/Smo family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000044">
        <property type="protein sequence ID" value="CAB3977377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8D1"/>
    <dbReference type="OrthoDB" id="5966762at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15039">
        <property type="entry name" value="7tmB3_Methuselah-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.410.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000539">
        <property type="entry name" value="Frizzled/Smoothened_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022343">
        <property type="entry name" value="GCR1-cAMP_receptor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036024">
        <property type="entry name" value="Somatomedin_B-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001212">
        <property type="entry name" value="Somatomedin_B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01033">
        <property type="entry name" value="Somatomedin_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02001">
        <property type="entry name" value="GCR1CAMPR"/>
    </dbReference>
    <dbReference type="SMART" id="SM01330">
        <property type="entry name" value="Frizzled"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00201">
        <property type="entry name" value="SO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90188">
        <property type="entry name" value="Somatomedin B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00524">
        <property type="entry name" value="SMB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50958">
        <property type="entry name" value="SMB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0732">Signal</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043534592" evidence="10">
        <location>
            <begin position="20"/>
            <end position="762"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="431"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="466"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="495"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="538"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="582"/>
            <end position="611"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="632"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="658"/>
            <end position="678"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="694"/>
            <end position="762"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="694"/>
            <end position="719"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="722"/>
            <end position="734"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3977377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="762" mass="86714" checksum="66A728133C9AEB4A" modified="2020-12-02" version="1">MSFTFVWCLTAILATPVLAVGENRSQSDGLYSTIQQEKQSMMMWVHGVVAEQKSCGNLCGESLYKRDIAECHCDEQCVEFGDCCLDYWERCNASFTKTYKQERIFECVRRKLRLSTNWTGQAENRRDLGYENVIKCPETFQNLRLKNACETPEQDNENVLPFVQGRDGRTYRNQFCAECNGVSEFERWNTTLSCSSNETTMFIKRRVMSNNYKFTNEERQLIRETCEIELAPPFGATGTLCRMVTECENNKSTDYWPCKLYKQQLYSVMHPFEVYKNPHCARCSGAHLFLLQDVDVFSTPGQEGKSSLGILFDFTKSSQIYGLKEVTTQHTCKPGELYDYQLKACRQRRILKNPVSHNWTCAYSNETFANSSEHIIIHNNQSIYVAAHQKMYKPGEYLWHLGNITVCGNLTVSYFKSTMEKLRNLYTKAEFYITVIGLSLSILALLAVIFTYFLFSELRSKLPGKIVINLAIALMLAQLVFLFDMFEDVEGEGCVAIAVLLQFLYLAAFCWMNVMAFDVSRTFAGKSHRSPSGSRNKVFILCLFYAWGLPLVITGLTLIVNHTGAMNVAYGNNYYCWITNPVALVIFFVVPVVVMLLFNIIALVRVLVAVRGVRKVTKKVRDKSTAGQDARMCWKLTAVFGLTWILCVAAEHHIALRIIFIIFNSLQGVFIMIGFIMTKRVLNMYLKKAGRKPLSTTATGSTQKSTLSRSEVTRKTSSAPLVDRKPLEKRRDSPEQAVKVVNDEDSPEAELISSMEGPETKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HBZ6</accession>
    <name>A0A7D9HBZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010241</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000226">
        <property type="protein sequence ID" value="CAB3979765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HBZ6"/>
    <dbReference type="OrthoDB" id="9973512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="457" mass="52718" checksum="3C06BC296CD1FDA7" modified="2020-12-02" version="1">MDIPSMPLQQILSNLTDIADGVRTNPRFCQNMKQQLMKCGYDWFDDISNEHKVKEQVMKVLAVAVNEAIQKKVDFNVDLSLGDIGEVNQELHQLLDIPEDKSLDDYFSLKIWSLINNLVEATSPLDMAEYLKRSAPQWLVKNIIQYQFHMRWHTHGGEPHDYTFYQFCDKAGGEGEFNEVDIDNDWSWIDPSIRKFITENADEQKVESVQSLEDSLAKPTLYWAVLNDGEFYSGDSLRLQEIGRTQVYVGKANNGIRGRWIKDKDNHCAMMKKCLDNVCAMTTYDPSTLEGIQLVDARLALAKVRRDHAKEYRLMKSGDDFPENSALFVIKTFGDDVEKAEIAQQNAQVRLDKAQRDVDKAQANWPETRSVAYSRLQQLKAEVEERQEELYFEAIAVVNDTKTLTISKEEAETQLKQAEKQHRKGKRVHEVWKNIIPHKDCNISWKPTDMGYGMNCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HEP9</accession>
    <name>A0A7D9HEP9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA-binding region-containing protein 3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A064545</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000542">
        <property type="protein sequence ID" value="CAB3982801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HEP9"/>
    <dbReference type="OrthoDB" id="277802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005689">
        <property type="term" value="C:U12-type spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097157">
        <property type="term" value="F:pre-mRNA intronic binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030626">
        <property type="term" value="F:U12 snRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd12238">
        <property type="entry name" value="RRM1_RBM40_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12239">
        <property type="entry name" value="RRM2_RBM40_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000207">
        <property type="entry name" value="RNA-binding region (RNP1, RRM)-containing 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034147">
        <property type="entry name" value="RBM40_RRM1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045164">
        <property type="entry name" value="RBM41/RNPC3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16105">
        <property type="entry name" value="RNA-BINDING REGION-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16105:SF0">
        <property type="entry name" value="RNA-BINDING REGION-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="7">
        <location>
            <begin position="11"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="RRM" evidence="7">
        <location>
            <begin position="381"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="94"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="196"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="310"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="94"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="115"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="230"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3982801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="469" mass="52831" checksum="DF86DDD7D5A88D11" modified="2020-12-02" version="1">MALAHGDHLSADLLVKNLPRQFTDSDKESLLQYFGAKHVVCMGARGKMRNSVYATFTDSSSAKQALGRLHQLEILGQKLVVEFAKCQHKHLAAQERTRLSPKRHDTNEDVSEAPDVERDERLPRVSEDSVTYDKVSSKFGLNYGRNPCLHYVYPPPNPSIITNIANSLICVPKFYVQVLHLMNRLNLPAPFGFQTHTPPFPGETPVDDHVSSSEESELESDTENKSTTQMRKRPSTGSKPKQKRLRVQASQILHQNQPKLSTSKPQPVQSVFEQAVGKPQQPSKIGVKLADTITAIFEAGPQRILGQDEEKTELDEPSGSGFGTFAPATQEDEKHDGSEEDFEEDDGEFISLHELRKNRISREEMKSLSAFKNYTCGEPTCRLYVKNVAKQVEVKDLRRVFGRFIDQDSEESKLSFDVRLMKEGRMKGQAFVSFANEKSAEKALRETHRYLLFGKPLVVQFARSAKPKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKG0</accession>
    <name>A0A7D9HKG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc finger OZF-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A031865</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001133">
        <property type="protein sequence ID" value="CAB3987197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKG0"/>
    <dbReference type="OrthoDB" id="3565419at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031519">
        <property type="term" value="C:PcG protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:002343">
        <property type="entry name" value="Zinc finger protein 33A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000625">
        <property type="entry name" value="Zinc finger protein 536"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14003">
        <property type="entry name" value="TRANSCRIPTIONAL REPRESSOR PROTEIN YY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14003:SF19">
        <property type="entry name" value="YY2 TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3987197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="320" mass="35964" checksum="73084FD38E998B4F" modified="2020-12-02" version="1">MRSDFTGYKQCKQNAFVGLGLPSIVVDSKLLLTAERNLKQDSDITMDHSTKFACKNCGDTFRWEKELSKHRRLDCKKKPYGCPECGQLLSRRDSLRQHLQRHGGGRKYPCKFCDKTFDQQQNLKVHLRIHSGERPYKCPECGRQFNQSQNLTTHLRVHSGVKPYVCNICGATFRFCSGYRSHMSRSHDPSKPARKRGRSKAIASQKQELPEAKVNQVHRVSVIARVSTSSSMDGFSSIQSVPSKDTCTEAEPLEDNIEIPSPFNAGLLVHSAKPVVSPPVPTVPDLQFTCQLCNLVTFNEADIIQHMIVVHGLPLNDIAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HPL1</accession>
    <name>A0A7D9HPL1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001637">
        <property type="protein sequence ID" value="CAB3990297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HPL1"/>
    <dbReference type="OrthoDB" id="10243800at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43907">
        <property type="entry name" value="SLEI FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="21295" checksum="C358D9FFAE0A4E3F" modified="2020-12-02" version="1">MGVLLLEKGVLLFEKKAPLFEKEVLLFEKKAPLFEKGVLLFEKKVPLFERGVLLFEKNAPLFQKVSLLFEKNAPLFEKRVLLFEKDVPLFEKGVLLFEKKVLLFEKGVLLFEKNAPLFEKRVLLLEEKVPLIEKGVLLFQKNVPLFEKAVLLFAKNAPLFEKGVVLFEKYAPLFENRVLLFEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HS21</accession>
    <name>A0A7D9HS21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051799</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001986">
        <property type="protein sequence ID" value="CAB3992132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HS21"/>
    <dbReference type="OrthoDB" id="3863715at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="29646" checksum="27D0719E5F9A9B3A" modified="2020-12-02" version="1">MEEARKAVKTMVRDGVIERSNSPWKAPVVLVKKKDGTPRFCIDYRKHNVTRKDPYPLPRIDTALDAFVGSKWFSMLDLNAGSQKWLLAEAIYLGHIVTDSGIATVLSKTEAVRTWPTPHDKKELRSFLGLCSYYRKFVPAFSVVASPLHKLTEKNVEFQWSGECDDAFRKLKDLLTNTLILAYPQPKDCKYCEKLEEKEILNDSNLLSVGEETDDKTTMRVTVDDKTPLKIWSHEELIARQNEDPNIGPILRWKTKYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUV4</accession>
    <name>A0A7D9HUV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086947</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001774">
        <property type="protein sequence ID" value="CAB3991021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUV4"/>
    <dbReference type="OrthoDB" id="5957404at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="147"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17407" checksum="05DD3BB760568F47" modified="2020-12-02" version="1" fragment="single">MRALTIRQTILFASKESGSEITYDSSSVQSLFLHALETGLKDETIRAKLRPSVSKTDVSDEELIEAMFLAVSAETERSKKFNVASPGKSMKARVSAVQKEDDTEKKEILAAIKQVKTDLSAMQNEMKTLRGTVHNPNQNQSTAKPSRKCENCKPTDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HVI3</accession>
    <name>A0A7D9HVI3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 SUMO- ligase KIAA1586-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059676</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002331">
        <property type="protein sequence ID" value="CAB3993806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HVI3"/>
    <dbReference type="OrthoDB" id="8909466at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061665">
        <property type="term" value="F:SUMO ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016925">
        <property type="term" value="P:protein sumoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF8">
        <property type="entry name" value="E3 SUMO-PROTEIN LIGASE KIAA1586"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="807" mass="91368" checksum="9C34715FA87205A0" modified="2020-12-02" version="1">MSKKVKHASLLDFFMPKAKKSQENPLEDSTAVTDLRQTDNCVLQQTNDSNKQINEINSDVSAVSHASLDTGRGEDIEMIENNESDSSETENAHRKFDGNLETMENDLSESSSVGLSNANLNASNEIPNSCEHSSQSIHSIAPSCWSVKQQDYFTSAYPWIIFSNGKIGCRECKNVNTLGLHAKQRSHISKEWIECTVFPCKTKSRETSAAQKYLRKKITKHAKSNAHVTATNILKERQKRKIQSSTGLSVAQHQSATEKCLRTAYYVAKENRPYSDYENLVKLQQKNGISLGVTLHSRWSCTEMIDIIATTMRKKIIKEITKNNKKIAIIIDEATSNAKDSCLVVYVRSIINGLAVNIFLSIIELGGQDANSIYESLLDSLKSNGINDEYLAKNFIAFTSDGASVMTGAIKGVATLLKSKYPQIVLWHCLNHRLELAVSDTIKAVDGTQPIEDFFGRIYTIYSQSAKLQRELKNIAAELDVQLRKVDKILTTRWVASSSRAVESFWRNYPALYKHFHTLSQSNDKHKATYAGLVKRMETIEFIEDVAIMKDCLGQLSILSESLQKDRTTLLKASDYLQWTINALEKVKDSLETKYEFRNIYDSSVQFKGVELKSFPSRTGYKSFNRKQFLQGLIDNLQRRMIDSSEKILLNQIESLCPEKWPRGEKIPWLKGEQDVISLCERFNINATGIVTSYREFFNDPRNIPSLVEERLLKGLIQIVPVSSAEAERGFSQMNLVCTKSRSSMSVSHLSSLMFISINGPPVQFWEASLAVQQWLEHHKSAENNQTRKMKQTTESELTPLQRFFVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HYV8</accession>
    <name>A0A7D9HYV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A006163</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002268">
        <property type="protein sequence ID" value="CAB3993482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HYV8"/>
    <dbReference type="OrthoDB" id="5976685at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="447"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="566"/>
            <end position="662"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3993482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="711" mass="81080" checksum="A3D0206B5D0C0B29" modified="2020-12-02" version="1">MSLSEGLARLRAIRGGHRAVLTKYLNELEELLATAEISEESLMRLEVLKQQIDGKQRTLNELDAKILNEIKIEDVEKEIDESEAIDIKVTVARERIERAKKQHATPQHTNIVENSQNTNDHVATNEDGSKTCPVRILFDSGSQRSYLTDDLKRKLNLNPIKTETLYLNTFGDSKHERKSCQLFNLNLRDRDNEITPIWALNFPVICSPLPSTVDIFDYQHIRGLDLADSSEIQDDHHSDTVDVLIGSDHYWSFMYGETIRGDSGPVAVSSKFGWVLSGQTELTNERECNEDAKNEEVKAPPKITHVLLNHDPTQATARIDKVMTIERYGSFQRLLRVTVIVLRFIKLLKSKISRGPQENRNEDVKDLNTAEVLWIRATQISCFPEEIKLLSDARKDTTGSRDSASKIIQFGLYLDEAGVLRSRGRLNESSLPLDSKNPIFLPNKHPFVNLLILHMHNEIKHSGVRDTLTTIRERFWILRGREVVKKLIRHCVVCRKYGGKPFKPQPTPDLPDFRVSSDPPFTHIGLDFAGPFFIKSMFETKPTENGESNPNVKAYVLLITCASTRRARRHKQVLDQFTKQWRREYLTGLREQSLAKSHKGNSGSTISQGEIVIVKNETTPRAFWKLARVEKLLPGRDGNVRAAEIKLGSKFVTRRPIEQLVPIEVKSTLADLETGQEVEKECIQDDDNLVVRSRRTAAVLGERRRREENIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I0J9</accession>
    <name>A0A7D9I0J9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069926</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002824">
        <property type="protein sequence ID" value="CAB3996226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I0J9"/>
    <dbReference type="OrthoDB" id="10673125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="333" mass="37693" checksum="F11C26F0A829A165" modified="2020-12-02" version="1" fragment="single">MISIYKREKLKKLSEYTDTPDGAISLFEGLSLVDYIVAGETVCISEHRQPCKNCLGLLNVAKVVANEGHWKMKDAFKCLAEHVQPCEACPEKITNNVNETCNKPKMCSDPINMANYSSQHAKRKFLQMPLAAINVKSGSKESETFLVDKHANLTLLRSLLQKLLEKRQDNNLLNMETFKALIESCSSDAEREKLRFTVAETTGLSQRQLTNQFGISNCINRKARIEHALARALEIRKNVEKLSQIREQAVLMSLGFDVAEIDSDDSSSESESDPDVEVENDLILQQSLTKRVPTHQYCENEEELDTATALFQKCKTQKLLSCLKDNHFNWISF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I101</accession>
    <name>A0A7D9I101_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077441</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002592">
        <property type="protein sequence ID" value="CAB3995065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I101"/>
    <dbReference type="OrthoDB" id="10030173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF37">
        <property type="entry name" value="OS05G0311600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="512" mass="57949" checksum="9388F544BE6E7303" modified="2020-12-02" version="1">MVKFEFQGQPTQTTTPTSADRSVDNDNLTAESDSGTSKIRFTNDVDNSISIDQDVDGSVDDAVLKNDETTEVTRPLLSDNHFTNDEQPSQPKLSKYPVNEALKLHRTRSFQQSWYKKYNWLEYNVQKDAPFCFCCRKYSKTGNSSPFVTTGFRNWSNVMESGKGYGKHESSESHQFSYDAWNRKKMIESGALKNIADKLCPNANEIAKENKDYLRILFKYVLWFTTNSVATRGHDETEESEKQGNWLSFIKLQLETNPSFQELHEKVTKSRSTDYTSKTSFNGFVTAVANGVRDAIYSDIANCGMYSVLIDESKDKGNKEELALAVRYYSEKVVERFIEIKHLTEFDAQTIAAHTKDLIEFITQHSEGSVVISLGADGASVMSGEYAGVGEILRSQHFPWILYIHCIAHRLNLIVNDLVKDSPLAVDVLAAVTRLYSFLNIGKVRPVYQKIFQEMFPKTQTKYLTQQFEVRWSCKFEAVDFVAEKPECILATLAQVSNNGAVHGAKHAEEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4Y8</accession>
    <name>A0A7D9I4Y8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">STIL N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A014828</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003057">
        <property type="protein sequence ID" value="CAB3997252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="76173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005815">
        <property type="term" value="C:microtubule organizing center"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031023">
        <property type="term" value="P:microtubule organizing center organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007052">
        <property type="term" value="P:mitotic spindle organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071539">
        <property type="term" value="P:protein localization to centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007224">
        <property type="term" value="P:smoothened signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026123">
        <property type="entry name" value="STIL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057731">
        <property type="entry name" value="STIL_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15128:SF0">
        <property type="entry name" value="SCL-INTERRUPTING LOCUS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15128">
        <property type="entry name" value="TAL1 SCL INTERRUPTING LOCUS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15253">
        <property type="entry name" value="STIL_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STIL N-terminal" evidence="3">
        <location>
            <begin position="41"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="395"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="656"/>
            <end position="795"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="918"/>
            <end position="1003"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1085"/>
            <end position="1138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1271"/>
            <end position="1295"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1041"/>
            <end position="1082"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="429"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="486"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="525"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="536"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="656"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="709"/>
            <end position="724"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="733"/>
            <end position="751"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="752"/>
            <end position="766"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="767"/>
            <end position="795"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="918"/>
            <end position="932"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="939"/>
            <end position="949"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="972"/>
            <end position="1003"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1099"/>
            <end position="1108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1274"/>
            <end position="1284"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF15253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3997252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1321" mass="147346" checksum="3F3B2C7C6311D023" modified="2020-12-02" version="1" fragment="single">MMNVGTGQPSAYFPLRINNKSQIQETNSVVPIKFPSTRNVLWESKPVGDFETLALILDKQVVQLFIVEKSLRLAHRYAEDRRLTSFLLGSVYPKSGESGVCFGVDRFDPGREITEKIGENVTKSKVPTAVVPGDHIIPITVKQELLTIDDSISHTKDEFTRAIQVMEGKICGKDVLTLSHVVSLKANLYCCRKQDELIIALHCGAIVPDSKFQARRIAPLPIIPTTLARNLAGPLRLSDVEGTPKMGYVTMDQTRKLLLLLESDPKVYNLPLIGIWISGVHNVHHPYVWASCLRYLNCREMKDRVLHSSGSFLLLHYSIMQKIPDFWECFLDNKEKLDFELLSCQENLHLDLDDCSSKEPLCFHLTPSPTRMNKILFDEAIAEWKKDRNTLSDIEQNVDVDRNNGFSKSSGFKNDENPRPSPSPHPSPTQVKSPNAPTQEESLSLSFDEGSNNFVNKHSQQTRENTKTLAPHFKQTPNPMKPGPNKSDSFKLSRQPFKQITPQDQGNSPNSFLSRGKPVLASRNQENRKGEDKENTPLTSRNIPQGNVNQKSLSGGTRENTVAFSERNNNVPRRQSVGNHHQKALSGQNSSNPRVPVKVKQFGKRKRYHSEDVQSHEVQQPDELHRIRRNSHSSFALSDDDDLSDISLDSSFTKNNEVRCSSNHSPSTLNQFIQPSPNHSPKLLPSNSEYLPGTRTSKPPVDRPYSDCISDQPSKNDSCNLNHQSPRDDVNRRNQSNANTRQNSPKLSGNVRQSSPSPQSNNHQRSLLISNNPERQYSNDGNLQPTNPDIHQCTRITSNSGRHSFARGIPQHCNRNTAQERISIDIRQPSPKNSDNGTPVVYHGNPQGYSSHTFHTSNNMPGSNNMPGVQKGIVRMPTDQPSDNQPVMFAKSGDMTNQCCDIDAEASQTKYGDMMKASASNAGSTMQQSPATSMKADSESSTKYNNRNSALKRPSNGLSAASYHQESDKNARNSIQQQSPNICNDTTHQISSNRVSNHHGNSQQSLSYVNHASHRPKPETILTPIDSEITNVEAQENARHVVQLKKEYLEKLASSKQLEEQVKKQEDMLRVLQEQVRSLLQIKEAVSSEDDRPSLPLTPASTPVSTHENGGRLSHRASPGIQEGQNASQTVDSRREPERVTIGVNTGASLLWERPRDGCENCCKCKKSEPEQIRQSALDNTEPSEHPDVFLTPEKTESLISPSQVDVQADSTRNSTPAISNMMISSMSADDDSLLSDQAVSTSQAQESAGEGREFYDKLLCQVKDLLSEQVSTKQEDSTEELHHTSQSAQVPTREVVVKATLKQLEKIKHSEQDGCQQSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7C7</accession>
    <name>A0A7D9I7C7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066118</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003974">
        <property type="protein sequence ID" value="CAB4000978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7C7"/>
    <dbReference type="OrthoDB" id="10536709at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="169"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="333"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="542"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="623"/>
            <end position="703"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="740"/>
            <end position="785"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="817"/>
            <end position="852"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1019"/>
            <end position="1095"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="169"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="231"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="242"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="295"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="338"/>
            <end position="406"/>
        </location>
    </feature>
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        <location>
            <begin position="415"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="425"/>
            <end position="436"/>
        </location>
    </feature>
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        <location>
            <begin position="437"/>
            <end position="447"/>
        </location>
    </feature>
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        <location>
            <begin position="566"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="743"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="754"/>
            <end position="777"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="818"/>
            <end position="831"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1095" mass="119228" checksum="50691BF5598B8B56" modified="2020-12-02" version="1">MVDLEIHLPNSDVRTYKFYKTDTLKGALKMVCTKEKLRVNEYYFHHMQRTDDSLDMALRIGDLRTDKIRLISKREMREGSTNTLDKVSISTSRKKNRGMFSFVRRRFSRKRKESPQYSSAPSVIQYTDNVFMVERTAGEQRIDEIHLRDSNSSANSEIHVVARATKSDTTGVKIMSSTLPSRSVKRKAPPPPPGLKLIMPKSQQPTSGVNGHHTIDGKKTTKKRRAPSPPNNVTTPATPVNDGTSPNQNGTKPPRPPNPPSIITSPTNLPHLGTEHEVPETSDNVDYKSPFPVFIAPPPPDSTPPPIDECETPIGPIDSEFIDDGSVEIPVEINGIIDDTKSLDSKSSENREDESNKEAQVKVELDAKDSTKTESSENDNKDVSDTIEKNGQKEEKIVEDQTKVAEDTIDGDTSLKGNETSTSNSKEKNKPPKVDENANSLNQENTKNLTPEQLQALMMKTQNPQEPLNLQNQQLFAMQQNQQMLSNILLQQMLQQQMTQQRQPAIMPMPMAGVMPVSPLHPMQLGGGVNTMQPGGMMSPIANYPNPMWSQPSAQPLPQPVPPSESKGTNEVKTSTSSTSPDNLPKEVKSESGSQTETAKPPLPVKDEELVNRPLFKKMLAQVSQGKIQGIPRQTSHDSEATPTSPISPTAKIAKAPTSYVASAERNVPQSKPEEERKAPITLGEAGRKSSYVDSAISKKKDEDVIQNDVKVTTKIPENSAVSINKIPAQVVVVDSTINKQSKATEPDVKIEKTSQQAVMATDSSNVSRNASTSMGNSMKHENTSSSVMFTQTVPSAPNVLDHNKPLVGFNQVHTVNTPKPTSPTSIPSVTGGASVSEVENERQTSPIVNNHTPSLITSTSFGPNPNPGATVVNHNSPNQANPPVSTLPSGTTVVNPPIHSKPPIHAPKPHISASGVAVVNHNTPNQPLVNTPKPPTNPLNVTSIARQAAQVAAEKRNSQISKPPSYVGHTPHKLKTEEPVLGTFKYQRAFVPPLSPPTNAGLNQNGGQLSYNYATTGRIKTDGAKPPQVAKKPRHMSEPKPTVATKPTYDIRQSKALPNKSKKSQHINISLSLSPEERMQLHNKSGLATNAAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I987</accession>
    <name>A0A7D9I987_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074658</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004784">
        <property type="protein sequence ID" value="CAB4004015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I987"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="93"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="93"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="114"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="14570" checksum="1C194C04DD36EE04" modified="2020-12-02" version="1">MTEVNPESVPVTKPTDPWKKIKDPRRVEAGKRLAKISQQAKAAKKARAEENLKAEVRDECTMKNEGGWISVEKLCLVLGVGIGLGSLYLNWQSRRDEKSPAKQEDEIIDENNNDVEKDSSKEPFDDLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IB12</accession>
    <name>A0A7D9IB12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">G- -signaling modulator 2 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A066634</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005145">
        <property type="protein sequence ID" value="CAB4005263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IB12"/>
    <dbReference type="OrthoDB" id="5972790at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001965">
        <property type="term" value="F:G-protein alpha-subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005092">
        <property type="term" value="F:GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000132">
        <property type="term" value="P:establishment of mitotic spindle orientation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052386">
        <property type="entry name" value="GPSM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954:SF1">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4005263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="18143" checksum="1F38AFCD8217EDB1" modified="2020-12-02" version="1">MAAERRAYSNLGNAYVFQGKFDLATDCYKKTVNIAQSLKDRAVEAQASYSLGNTYTLLNNYEEACKNHLKHLEIAQELGDRIGEGRACWSLGNVNTSLGNHEIALEYATRHLEISKEVRGSILEYMSRLDFFHFVIGFDFRYSLKNMSIKLLTAVIRYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IE90</accession>
    <name>A0A7D9IE90_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphatidylserine decarboxylase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006075">
        <property type="protein sequence ID" value="CAB4008278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IE90"/>
    <dbReference type="OrthoDB" id="5961150at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004609">
        <property type="term" value="F:phosphatidylserine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006646">
        <property type="term" value="P:phosphatidylethanolamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003817">
        <property type="entry name" value="PS_Dcarbxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022237">
        <property type="entry name" value="PsiD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10067">
        <property type="entry name" value="PHOSPHATIDYLSERINE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10067:SF9">
        <property type="entry name" value="PHOSPHATIDYLSERINE DECARBOXYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_7G01730)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02666">
        <property type="entry name" value="PS_Dcarbxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12588">
        <property type="entry name" value="PSDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="46226" checksum="A812725CE5B5FEF3" modified="2020-12-02" version="1">MRFVTYNKTRFSRRLKQIIGSKHIKQKSVLAFKELIETDPEVYMLFSDMFSEPPADSSDNPIKNYMDMLRKMDAIIGAAPKFQYNSDDDDDYQDPAKPFGNILVYVVATPSGSKAFISDKVNKCLRDILRTWTKFLDSPQSKLVLNKKDGWLSPEALKRMPGFMDKFPCDKEDEYCGYKSWNDFFSRKFKPNVRPIANPDDPYTVVAACEASPYYISKNPQLRDKFWIKSQPYSLQQMLNNDPLSETFVGGTVFQAFLSSRYYHRWHAPVGGKIKRAFIKEAAFYADALRAGFDLTVGHLSQRYKSHVNTRAIILIDTGLEKIGTVAFIAIGMSEISSCLIEVKEGQTVKKGDQLGKFQYGGSTYCLLFQKGVKVKFADESLPADSANWSPCHKQLVRSKIATIEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IK40</accession>
    <name>A0A7D9IK40_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">G- coupled receptor GRL101-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A002099</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006227">
        <property type="protein sequence ID" value="CAB4008782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IK40"/>
    <dbReference type="OrthoDB" id="5984578at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008528">
        <property type="term" value="F:G protein-coupled peptide receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007189">
        <property type="term" value="P:adenylate cyclase-activating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009755">
        <property type="term" value="P:hormone-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd15137">
        <property type="entry name" value="7tmA_Relaxin_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1070.10:FF:000393">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000005">
        <property type="entry name" value="Procollagen C-endopeptidase enhancer 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24372:SF77">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24372">
        <property type="entry name" value="GLYCOPROTEIN HORMONE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00365">
        <property type="entry name" value="LRR_SD22"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="11" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4008782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1079" mass="122645" checksum="0670F6A218D6819E" modified="2020-12-02" version="1">MTDGTLVFLQVYVKATQSYESEVNIDNILFLEDYCDPVPTNAQDWQTSISNSSSGYITSPYYPALYLNNMKRYWKIEVPDGHRLKLEWSYLNLEHQKQCKRDSVIIKDSRRSRTSTSFCGYQLPLTYLTPGNKVIVVFQSDERNVGTGFKIHYQAVPDCHPTVQCFYIRSNKSKVFVGALDLMIIPEYFPAPTSAIHFDDNFLVRLGASHFENLTQLEYLSCSNNKISDVDKMAFNSLTSLKTLRLSLNFIKSIPTSLFLETRFLETLDLSMNWINEMDTGLFSALNNLRLLSFRKNLITKLDDGVFSGLKHLQYLYLDNNELIDIGSSVFDDLSMLKTLLLRNNKLEVVRASWLKDKKNLKVLDVGDNNIKQIEPGSFRDLVNLVQLDMSNNQLQNIPENLFQSLVSLRSVKVDHFTLCCYAKQSNPSVTCISKADDGFSSCDELLKNTVLKYSIWILGIMAFAGNLIVIIWRSIAKDANRVNSFLLTNLAVADFLMGVYMLIIAYKDTLWAGVYFKHDVAWRASDLCIFAGVISTVSSEVSVLTLTVITLDRLVCIIFPFRFRRWTMKKVSAIMCLVWILGFGISLAPLFYDDYFYDYKHNVHFFGRSAVCLPLQLSSERPSGWQYSVFIFLIMNGVSFLFILLAYVFMYHTIIKAASAVRSTRMNQDSTLAKRMMFIILTDFACWFPVIIISILALTGNLYDPTKQVYAWIAVFVLPINSSINPLLYTFSTPFVRKRIPTARRILSRKRRQNRGEATDRQLSSICSTHDNLNTITSPISTPQSLRKLEIVNEGYMPDENIAESSFTESATAIEYRIRLVEDIELLNDGNMTMKSYAAVEVDGEETPCLIHVYSSENEESWRDTTTILSWLSLDGGHDNILPFLWSAKGDKVLVEKEESSKIITLELKPNDCLICYELPSKQTLGGFLKMNNHEITEESVYYILNDLVEAIDYLSSKQIAHHAILPENIILVESSQFAVESTVLGGFHAAKFLTSSEDKETDNGLGKENLEELEVNVISFGNMIKILLDVCPTLEKFSELHDIMVSCLSHGSKPTTSDLVKQFALMDPNYPPGDKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IMS6</accession>
    <name>A0A7D9IMS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069919</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006411">
        <property type="protein sequence ID" value="CAB4009311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IMS6"/>
    <dbReference type="OrthoDB" id="6012460at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11402" checksum="E99982B8B07D9F46" modified="2020-12-02" version="1">MAGTQNLSDRDESFDSSDSDNEDVQVQVQDPILTARNAGASLSVPAKANIARKRKLPTNQGKYNQRGNKTIANTTAWDRLKDFPNHHFTVIDRKLRCNACNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J0J7</accession>
    <name>A0A7D9J0J7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">cGMP-dependent kinase 1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A037888</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cAMP-dependent kinase regulatory chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010414">
        <property type="protein sequence ID" value="CAB4019341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J0J7"/>
    <dbReference type="OrthoDB" id="63267at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005952">
        <property type="term" value="C:cAMP-dependent protein kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030552">
        <property type="term" value="F:cAMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008603">
        <property type="term" value="F:cAMP-dependent protein kinase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004692">
        <property type="term" value="F:cGMP-dependent protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd12086">
        <property type="entry name" value="DD_cGKI-beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.10:FF:000035">
        <property type="entry name" value="cGMP-dependent protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012198">
        <property type="entry name" value="cAMP_dep_PK_reg_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002374">
        <property type="entry name" value="cGMP_dep_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24353:SF111">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24353">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000548">
        <property type="entry name" value="PK_regulatory"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00104">
        <property type="entry name" value="CGMPKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="cAMP-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00888">
        <property type="entry name" value="CNMP_BINDING_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0114">cAMP</keyword>
    <keyword evidence="4" id="KW-0116">cAMP-binding</keyword>
    <keyword evidence="8 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4019341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="45732" checksum="10933E069F2373F7" modified="2020-12-02" version="1">MFSRHKDHNKMGSVRELQAALSDKENEAKIKDNRIHVLEAELRRKDEQIRKLESELDKYRSVLQPTATTTPKSRLPRLGISAEPTLAKSLEEKKTASLKHHNKSLRSKDLIKEAILDNDFLKNLEPSQIREVVDCMYETKYKKDQVIIQEGDTGSHLYVLEDGKCVVTKEGQVLGNMGPGKAFGELAILYNCTRTATVKASTNASLWVIDRQTFQTIMMKTGLMRQAEHMEFLKSVPLLKELGQDALLKIADVIDEQHYDEGEYVIRQGARGETFFIIKKGTIVVTKRQNVHDEPTMIREMTTGEYFGEKALKGDDFRTANCIAGKGGTHCLVLDREAYCQFINGLQVKDYEDQQATTDATKAELKEQVNEFAHIQLEDLTVLKTLGVGGFGRVELVNHVMIFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J4U9</accession>
    <name>A0A7D9J4U9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rhamnosyl O-methyltransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088458</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011727">
        <property type="protein sequence ID" value="CAB4021946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J4U9"/>
    <dbReference type="OrthoDB" id="186626at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007072">
        <property type="entry name" value="RNMT_CmcI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04989">
        <property type="entry name" value="RMNT_CmcI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="25019" checksum="03C5C56AB883C688" modified="2020-12-02" version="1" fragment="single">GLRIRLSPVDLLLLYCKGRYQTSWNGVDVLKGALELITLQDLFGREKPATVIELGSYTGGCALWYADVLKCFGIKSHVYSIDISFDCLHKTAKMREDITFIKADATKDMKKIFPEKMLKELPHPWFISEDCHVPMENTLGYLEPFMEPGDYLLVEDTHPSFCAHTGQGLYTPGFDEVGLGKLNDLTEFLKSRSGKFVVDSHYTDFFGYNGSSSMNSYLKRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J5D8</accession>
    <name>A0A7D9J5D8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011941">
        <property type="protein sequence ID" value="CAB4022368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J5D8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="11737" checksum="30BE1E946B3F61DE" modified="2020-12-02" version="1" fragment="single">MIDGGDCVDDSGYVDDDGDDGDGDDDGDVGDNDDDDGDDDDGGDDDDGGDDDDDDDDDGGDDDDDDDDDDGDDDDGHGDDGDDDDGGNDDDDGDDGDDDDGGNDDDDGDDGDDDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGQ1</accession>
    <name>A0A7D9JGQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002642</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016143">
        <property type="protein sequence ID" value="CAB4029394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGQ1"/>
    <dbReference type="OrthoDB" id="5989289at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="23603" checksum="F828562609A778D1" modified="2020-12-02" version="1" fragment="single">MQEDIKAKLSGAKVFSKMDFKSAFLQLELHPDSRYLTVFHANDKLYRHNRLTMGVKPAQGELNMALQPLFAHIPQAHLIHDDLIVATETDGEHHSAITAVMQAITNAGITLNPSKCTFGATEIEFWGLRIGSARVRPDPGKVEALKHITPPRSKEELISFLCMMQSNADFIPNFAQHAAKLRELTKKNSRFTWTKEHHAAYEALIERFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPG3</accession>
    <name>A0A7D9JPG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Mediator of RNA polymerase II transcription subunit 34-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A018732</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019727">
        <property type="protein sequence ID" value="CAB4033999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPG3"/>
    <dbReference type="OrthoDB" id="6142977at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd17920">
        <property type="entry name" value="DEXHc_RecQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4033999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="338" mass="38640" checksum="A73E425E152D22A0" modified="2020-12-02" version="1">MAAFKDFCQEFLQMFGLNKFKNTQIIALKDLLLGKDVFVNQPTGSGKSLIFQAFPILFDMVKHSPSRSNTIVLVISPLVSLMQDQVSFLKSKGIRAAYIEEEQSDERVKKDVENGKFQLVYSSPESFLQNQRWRKVLAMDVYHNNVKLIAVDEAHCISHWGFSPRKGEKIFRVWFSRINELRSIVPGGVPVLALTATATKRTRERIMHALEMKNATIIKDFPDKPNITYSVQIVGTKTLETFHSLIAEVEQQGAACDRVIIYCLIIKITTMIYAHFQAELGQNMYKDVDYKECTTSNDESTEIQCAQVQEMMDAWHLTSDDELLLEFPDEFSNLSDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRH5</accession>
    <name>A0A7D9JRH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020040">
        <property type="protein sequence ID" value="CAB4034340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRH5"/>
    <dbReference type="OrthoDB" id="419189at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15279" checksum="6DEAC9227F9695FE" modified="2020-12-02" version="1">MNRQRVTLLVLLDLSSAFDTIDHGILLERLRSKFGIRGKVLSWFSSYLSGRSQRVMLNVLQSAYRRYHSTETALLKVLNDILLSMNSQRVTLLVLLDLSSAFDTIDHGILLERLRSKFGIRGTVLSWFSSYLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JSI1</accession>
    <name>A0A7D9JSI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082513</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020412">
        <property type="protein sequence ID" value="CAB4034780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JSI1"/>
    <dbReference type="OrthoDB" id="5981753at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="538" mass="62104" checksum="F433E4071B3F90FD" modified="2020-12-02" version="1">MSTNIYTKDELGYFRLAKGVVNHSTAALRKVLKQEWNYLYPLTPWRNDGTSGSQMLAEEQPLSRLYDPKFAKDYQAIKDHLRHGDMEQWDVTTLVFALLYSYALSGMRDNGRHWRRVKNAIHEIKEVRNTVLSHACKASIAQNNFQRIFDILERAVEDLLQRSDPLVGKLKALRTETEFFTDDLGKYKKLLQEDNNSLHLLDKHLERLEFKMNISIPKVEARNKYARSSTATSNNSEIISKLYRRVDRLERELPSCVDSVPEPFKPTIFHSARYKLLMNKSGVMSANYRWEECGNFLQGFNDSVDMQIYAGIQSAVALSHRSRKDECFEALKRLVPKALLAKQHGVVLHARIKIVKAYNLHDRGNDDEAMKEVDEAEMMLSLGECHEDLAEINSAKANIILSSGKNSANDRKRVLDHLDKCIHLCEKATVDKNITVVQAKLRKALFHLGYYQHGILEEAPKFSDVNIAETILSRVAKQSDLTERHKVYLMYGQSLLAYRKGETNMATKLENKLRRKCEDHKIRYEIEQLDMLRTLVRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JVP8</accession>
    <name>A0A7D9JVP8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sodium channel modifier 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A068533</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus speckle</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
            <location evidence="2">Nucleoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022165">
        <property type="protein sequence ID" value="CAB4036551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JVP8"/>
    <dbReference type="OrthoDB" id="1924550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016607">
        <property type="term" value="C:nuclear speck"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033570">
        <property type="entry name" value="SCNM1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031625">
        <property type="entry name" value="SCNM1_acidic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031622">
        <property type="entry name" value="Znf-SCNM1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32297">
        <property type="entry name" value="SODIUM CHANNEL MODIFIER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32297:SF1">
        <property type="entry name" value="SODIUM CHANNEL MODIFIER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15805">
        <property type="entry name" value="SCNM1_acidic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15803">
        <property type="entry name" value="zf-SCNM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="9" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0747">Spliceosome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4036551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="39393" checksum="C47094456AC1D6FD" modified="2020-12-02" version="1">MSFKRAGDDHCALRLQKKQRVAELFAEDIPADEVNQTRSGKYICLVCPHNPVLDTMPMLSIHRQGRKHLTNMSIKIEKEHNLNELLQKRKQEFYLKEASINNKPSNIGKNSMELFNNDTSETAPLLAKTRLLAERVTTQSTPNNPQVQKSNLGEKRTMESQGFTNEQPGDIFKKNKPFFQSRVELKLSRDIFDKNLQKSTSTTNNKTDHRLSTGAEKLSKHADGNICGSNTVIQGSKSLSSTAVVNRNDYKSDLQSKLMPIIKSSFSHGSANYCQIEGSTNTAVDGQLVGNNAVDFQQTTECKGVSGKMNRDEQRRYLEMKMSGWILDSNGKWIKDENVEFDSDEEEPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KKM1</accession>
    <name>A0A7D9KKM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008984</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041051">
        <property type="protein sequence ID" value="CAB4045684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KKM1"/>
    <dbReference type="OrthoDB" id="5986860at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027897">
        <property type="entry name" value="DUF4559"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35083">
        <property type="entry name" value="RGD1565685 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35083:SF1">
        <property type="entry name" value="RGD1565685 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15112">
        <property type="entry name" value="DUF4559"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18239" checksum="8173199E54C00D46" modified="2020-12-02" version="1">MAHRRLSDPEYRNWVTVGRAIQITRNGLETIIQNAADKYHTSLLANWPNNVPAWESRLKTAHRSRDKRKISWSNSDNTQWLAVGASWEIAKIFMAPLGPRKLDVVNAKTTDISQLLNVLEWSPRLTNGMFNTGVDLSKIADARSTRNLTWTILPTADWKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KLT4</accession>
    <name>A0A7D9KLT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045754</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043458">
        <property type="protein sequence ID" value="CAB4045933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KLT4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="6544" checksum="C766444B3E554075" modified="2020-12-02" version="1">MPVLSGTPCYQSVWGIKLKKFKKELSVLFIRQQITKMLSTSLNASALSTDVKSYVLKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L554</accession>
    <name>A0A7D9L554_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041867</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013926">
        <property type="protein sequence ID" value="CAB4025975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L554"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35450">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35450:SF2">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="262" mass="30454" checksum="725C1123CD5676B9" modified="2020-12-02" version="1" fragment="single">MTNIFNQARIKQRSVVITLLDLKNAFGEVHHNLIQSVLDYHHIPKDVSEIIKSLYTDFNTAFITSEFSTPFITIGRGVLQGDCINTFIQHIKSDKYRQFGFITNLLNPVHWFQFADDPEVISAQDSENQHLLNRFSIWSRWSNMIVKVDKCSTFGIKKSLTKSVQYLPKLLINNELIPATKIGESFRYLGKYFDFSMSEKEHKQDLITLMDDIMSEIDLKPLHPKNKLLLYSRYLLSKLSWHFTVTTLSKTWVSENVDSVVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L7G5</accession>
    <name>A0A7D9L7G5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DUF1758 and DUF1759 and RVT 1 and Peptidase A17 d omain containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A020571</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014520">
        <property type="protein sequence ID" value="CAB4026974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L7G5"/>
    <dbReference type="OrthoDB" id="5976685at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008737">
        <property type="entry name" value="DUF1758"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05585">
        <property type="entry name" value="DUF1758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1758" evidence="2">
        <location>
            <begin position="82"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05585"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4026974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="396" mass="44681" checksum="0171D8D1E650EAE4" modified="2020-12-02" version="1">MNGNKPIPPSKDDELPGEPNNTSTATVIDNLTSTDNPTTTGYMTTEDSTTTTTTKTRNKVLLQTAVTYAQGENGSNPIPVRLLLDSGSQRSYITNSLKKRLGLVPIRTETLNLNTFGDDHFKKRRCDIVQLSLKGNSDNRKITALCFPNLCSPLTTTIDLSLYPHLQELQLSDLNILEGRQNDSSIDILIGADYYFDILTGEMVVTGPTSDTESCSKVSGVHLLIEEQGSLLTPSPFALREDESELSKCLNQFWEIESMGINEEKVTKEEFLKDIRYLENEARYEVSLPWKNESIPRIQIAPDDRKMLKFLWFEDINQDPPTLKEYEFRRLPFGLTPSPAILSSTISHHLSRYKEIEPEIVSLLLESLYVDDFAGGAYDDDEALHIYRTSHDLLYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8E2</accession>
    <name>A0A7D9L8E2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">A disintegrin and metallo ase with thrombospondin motifs 9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069072</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015513">
        <property type="protein sequence ID" value="CAB4028490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8E2"/>
    <dbReference type="OrthoDB" id="5855429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012314">
        <property type="entry name" value="Pept_M12B_GON-ADAMTSs"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08685">
        <property type="entry name" value="GON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51046">
        <property type="entry name" value="GON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13242" checksum="0668D475B0FA0483" modified="2020-12-02" version="1">MKQVRLNVNDMSLDISDFRFATGSIPNVFHRFATAGDCFSPDCSEDYRKGNFKVDISGTNFLLPNSIPYLFSIYPACVQRLYKELMSSDRRQWSGYCGGRCGNCWPEVFRLLVEGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LDW9</accession>
    <name>A0A7D9LDW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017649</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017990">
        <property type="protein sequence ID" value="CAB4031924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LDW9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="18478" checksum="862894A94C9A0B68" modified="2020-12-02" version="1" fragment="single">MCASSIGCEKGVVNLYDSLFYDVILDDLQQQAENLVGDDFQEINVVPIQQQSSSGQSGTLDMCLMSLMIYKCKYGRVVFLQSKRVAEITRMKPLTLNFWLAQESVIMLFHNINDGYIRYFNILFLKQLKVSEFLMFSGREFHFWGPWNKICWITLAVFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LI78</accession>
    <name>A0A7D9LI78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032617</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cornifelin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017266">
        <property type="protein sequence ID" value="CAB4030965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LI78"/>
    <dbReference type="OrthoDB" id="1045822at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006461">
        <property type="entry name" value="PLAC_motif_containing"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01571">
        <property type="entry name" value="A_thal_Cys_rich"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15907">
        <property type="entry name" value="DUF614 FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04749">
        <property type="entry name" value="PLAC8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="11703" checksum="B9E004C25C3FF55B" modified="2020-12-02" version="1">MTSQVTTVVTSQPGAAPRDWASGVFGCFEDIKSCLFGLCCPCCFMISLSQRMGEGCCFPICCPGALLAMRVKLRAENGIQGSMCNDALCVNFCSPCVSCQLARELDAIGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LSS6</accession>
    <name>A0A7D9LSS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">THAP domain-containing 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A012794</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022174">
        <property type="protein sequence ID" value="CAB4036561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LSS6"/>
    <dbReference type="OrthoDB" id="6146439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.210.20">
        <property type="entry name" value="THAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038441">
        <property type="entry name" value="THAP_Znf_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027805">
        <property type="entry name" value="Transposase_HTH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF133">
        <property type="entry name" value="SI:CH211-262I1.5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13613">
        <property type="entry name" value="HTH_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="63"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="118"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="99"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4036561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="282" mass="32538" checksum="3B795711B69C0016" modified="2020-12-02" version="1">MPGRVKCFVSGCNNSWYRNTISNEGTLSFHRLPKNTVLIEKYENILKTKVPNAQNARVCGQHFKNGKRESPSELPISHIPPASNSEAGPICPKRKAPTPRGPVPPPKPRNQYFNTYKERMMKKQLDKKQAEINNLNEQLISKEMKIQDLQNLLQESRTNTGMEHNKVNACEADIIRLQNGLQEWEFNIERFIKDDSKMVFYTGLNSEQFNSFWEFVEPEISTPKRRKGISRKNELFAVLVKLRLGLQYEDLADRLGLSRQTVSRLFEGWITFLSSIVAKINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M7U2</accession>
    <name>A0A7D9M7U2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Muscle, skeletal receptor tyrosine kinase-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A088330</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035119">
        <property type="protein sequence ID" value="CAB4044487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M7U2"/>
    <dbReference type="OrthoDB" id="5981765at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005911">
        <property type="term" value="C:cell-cell junction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050839">
        <property type="term" value="F:cell adhesion molecule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051275">
        <property type="entry name" value="Cell_adhesion_signaling"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11640:SF31">
        <property type="entry name" value="IRREGULAR CHIASM C-ROUGHEST PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11640">
        <property type="entry name" value="NEPHRIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4044487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18054" checksum="F87A92D0266CA4D0" modified="2020-12-02" version="1" fragment="single">ISRTWCFKSSASGKDVILGKISRAGDITIVTRLYEVEIEEPATLVLKNVNGSYNGTYVFTLLSPGPSTYEVAVFIAEKPNVMINCPSHITLDEGEDCTCVCTEQGGNPPANLTWYKDGKQINNASYGENILTLTNVTKLDIGTYKCVAQSYTLTDEGSIEVNVTLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MJU3</accession>
    <name>A0A7D9MJU3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017521</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040655">
        <property type="protein sequence ID" value="CAB4045616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MJU3"/>
    <dbReference type="OrthoDB" id="6082702at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="26490" checksum="5F4F3835BD7F93E3" modified="2020-12-02" version="1">MYDFHYNTIKKEYGDKAKLLFTDTDSLMYEIKTEDVYRDFKRIAHNKKVIGKFKDEAEGVPITASVGLRSKMYSYTKENGKGGMTAKGVKRRIDNEDTVEVPIIEVCDSDKWTHIPEEYIECEERCESVVCESEPVVRVVVEEETVKLNNPKVEYIKPHDLFFLKVITFRRAERKLSYAKRTAQLLSFKWSNEKMTQYMSESDKPLLCEFTREELNRCREGHRPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNS2</accession>
    <name>A0A6S7FNS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000130">
        <property type="protein sequence ID" value="CAB3978642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNS2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="14824" checksum="3590DA7368FFA9A6" modified="2020-12-02" version="1">MWLGMLGVKVSLGVDGMAVGDTIGVMGLVWVEGGVVSMAVGLCGAIAWDVVGDVRVKVSLGVHGMAVGDTIGVLGWVWVGVVSMVVGLCGVLVGGLTGVVDCGRIEIGLVNMVDGEFDGVLVNRLFSKSGSDMTSKRCSVSISNPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWU8</accession>
    <name>A0A6S7FWU8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">E3 ubiquitin-protein ligase</fullName>
            <ecNumber evidence="10">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A087644</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the Deltex family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020000507">
        <property type="protein sequence ID" value="CAB3982497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWU8"/>
    <dbReference type="OrthoDB" id="2449614at2759"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007219">
        <property type="term" value="P:Notch signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09633">
        <property type="entry name" value="Deltex_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.720.50">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039396">
        <property type="entry name" value="Deltex_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039399">
        <property type="entry name" value="Deltex_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039398">
        <property type="entry name" value="Deltex_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018123">
        <property type="entry name" value="WWE-dom_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004170">
        <property type="entry name" value="WWE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037197">
        <property type="entry name" value="WWE_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018957">
        <property type="entry name" value="Znf_C3HC4_RING-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12622">
        <property type="entry name" value="DELTEX-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18102">
        <property type="entry name" value="DTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02825">
        <property type="entry name" value="WWE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00097">
        <property type="entry name" value="zf-C3HC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00678">
        <property type="entry name" value="WWE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117839">
        <property type="entry name" value="WWE domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50918">
        <property type="entry name" value="WWE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="12" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0914">Notch signaling pathway</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 10" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 10" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="387"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="428"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU367105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3982497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="671" mass="73914" checksum="0E98F748F2D4BD7F" modified="2020-12-02" version="1">MSTSSSIIVWEWEAQSRIWVPYTPRVSQHIESEFRRSMGSGKVDLGGQNMIELTGCEIDFSRMKQVNVLTKESVKVRQQKYPSDCPFAKGICWKWFADFQWQFYDVLTSNYIEDAFQQKSKRVHLRRSPIRIPNVIYFSNMEQVNKKTKFSRKIEREETKEQYPQANHETANMTGQHSFTQGYNPMLSSVSSRVITHTSAVQPVVQSYNPVMSNGSNTSTYTNGNLGSLNSAFSAVRPHSSNTNIQTVTQSYNPVMPNNNITQINGNLGSLNSPFRPVIPHSNNTNIQPFTSNYNPLMPNGSTNTTHTNSTLGNLSPPFMSVNPGFGIVPHNTNRLTHFGVNPSSNHMGTSTMTNINNQTGLTMHNTSPLYHTRGQLPVGHTPPRLQNGGMNSNYGASLIGGASSHTNSGAPVASSGRRKQARRANALSPTSKSARSISGPLDNFARPVLGGTQSDDECAICLESLNTPSDYDNNPTADVQCVSADILQLLKCKHMFHRICLQRLLESGTSQNGCLQCPTCKTIHGVMKGNQPEGGTMRVTNNRDDIPGYPGCGSIVIVYNFTSGTQGPLHPNPGQPYHANAFPRTCYLPNNSKGRKVLNLLKIAFDRQLVFTVGRSVTTGRDNSIVWNDIHHKTEGYGNGSGYGFPDPNYLDNVLAELASHGVTDDTQDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYT4</accession>
    <name>A0A6S7FYT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045561</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000543">
        <property type="protein sequence ID" value="CAB3982813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYT4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19146" checksum="3AF06E7B86A48B07" modified="2020-12-02" version="1">MVEETRTSSESKGEKDNKEETMDKEDVENAETSNESEREKDTVDKEDGENEEQGDTTDSGVEQGKENKENEIGGIISTISEQKCWDKFIKIAYQLLQSVKRHEQPATHALSREGNLFEALSTDPDRLALDAFLYGIAHLCHLASEVAELAILTSLPTRASPAKDFPDKSLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G1E0</accession>
    <name>A0A6S7G1E0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">PTHB1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A037960</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000499">
        <property type="protein sequence ID" value="CAB3982432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G1E0"/>
    <dbReference type="OrthoDB" id="10262646at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034464">
        <property type="term" value="C:BBSome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028074">
        <property type="entry name" value="PHTB1_GAE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028073">
        <property type="entry name" value="PHTB1_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026511">
        <property type="entry name" value="PTHB1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055364">
        <property type="entry name" value="PTHB1_CtH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055363">
        <property type="entry name" value="PTHB1_hp_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055362">
        <property type="entry name" value="PTHB1_pf_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20991">
        <property type="entry name" value="PARATHYROID HORMONE-RESPONSIVE B1 GENE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20991:SF0">
        <property type="entry name" value="PROTEIN PTHB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14727">
        <property type="entry name" value="PHTB1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23339">
        <property type="entry name" value="PTHB1_CtH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14728">
        <property type="entry name" value="PTHB1_GAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23338">
        <property type="entry name" value="PTHB1_hp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23337">
        <property type="entry name" value="PTHB1_pf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PTHB1 N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="PTHB1 GAE" evidence="3">
        <location>
            <begin position="428"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="domain" description="PTHB1 platform" evidence="4">
        <location>
            <begin position="521"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="domain" description="PTHB1 hairpin" evidence="5">
        <location>
            <begin position="630"/>
            <end position="733"/>
        </location>
    </feature>
    <feature type="domain" description="PTHB1 C-terminal helix bundle" evidence="6">
        <location>
            <begin position="735"/>
            <end position="809"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="815"/>
            <end position="910"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF23339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3982432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="910" mass="101692" checksum="131C68418F917A89" modified="2020-12-02" version="1">MSLFKARDWWSTWAGSEEDFDQGCLCVANIDNESSPSDKIIVGSYHGILRIFMPRTAEFKPEDLMLEIQMTQPILQLEAGHFVSGSDQLHLGILHPRKFSVYSVSVISGAVEHGNHFTLNLVYEHILDRTSYSFTYGPFGGVKGKDFICVASMDGLLSFFEQEMFAFGRFLPGFLLPSPVRYIAKTDSFVTCSSSRVVECYKYQTLAAATEAETKEKSDQRKISGKRLAPDWTFNIGDNAINVVVVKYDNISAIFVLGERSFYCLQCNGALLFMKKFEYNASCILPYGSFKEDTFNLMVGTHSKTLMIYQNVTLSWAAQLPHIPVDAKVANFANLKGIIVTLDETGYIYCSYLGTDPSLFVTPPAHSRDVQYDDVEDEMRELYKVIRESASNSEFVVKTSEKDEITIKATVPTSLDKHSCAVPDENGETFPSITVKLTLECQSNHPIENVMVTIDAGYPIMCNKTSSVIPSIGDTKVTTDVEVSFFLCGGCVPSTMKVQAIATFTTISDAPRICQCEFELPVCLVCRGCLPVKNAVCKLTLDTNKPPVNLGELFPEMVEDMLVPLVALGVEYYSGPVVTILASKTSQRYRIQCDKFEGLWLVVHELVTRLKDHFADLRDGVPLRLSFMGPLPLQYYFELIDSHFEQRLNQQKYREILGQRSAQFRAIQRRLLTKYKDKTPSPLANLDTLLDGTYRQLLALGEAEEDCQRCIQRTVIALACGTRLINLLIKLWTNMTDKEFKILESTLCADIAETESQGWEEVTDTAVTHLLKTCLSKGVKDQTVNTQALQFPKDTTKLKKHIALVCDRLGKGSRLDLQQTSSMSSSNPAPSPRNEPVHNPTLESVQEERTDNSKSPTPPNDTISPDLDQPKSSIHPGKLPSLTDARPRHDLNAGGMLSRDFENMKPFSAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G414</accession>
    <name>A0A6S7G414_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pre-rRNA-processing protein TSR2 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A040912</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be involved in 20S pre-rRNA processing.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TSR2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001229">
        <property type="protein sequence ID" value="CAB3987764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G414"/>
    <dbReference type="OrthoDB" id="263560at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019398">
        <property type="entry name" value="Pre-rRNA_process_TSR2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21250">
        <property type="entry name" value="PRE-RRNA-PROCESSING PROTEIN TSR2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10273">
        <property type="entry name" value="WGG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0698">rRNA processing</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="148"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="164"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3987764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="22736" checksum="1690E671B6F2079D" modified="2020-12-02" version="1">MAAERVEEEQIFMNSVQFVLGNWPAIRVSVEQSFGGQHSSEKERWLQEVIFNVFIENESLDPLDVEDYLAEILSNEFNVIIEDGSLTKVSEKLCNYYHLCKKGEHFKVAEEIKSVRLPQINVKCEDNNEDGMEIQENGVAEQFDDMSIKESEDSHMPETGVRYENNSSDVNGTNGSHDEKENGEDDGWKVVQRGRKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G791</accession>
    <name>A0A6S7G791_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038083</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000390">
        <property type="protein sequence ID" value="CAB3981441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G791"/>
    <dbReference type="OrthoDB" id="5966010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13385">
        <property type="entry name" value="Laminin_G_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="32439" checksum="E104C972600E8F9A" modified="2020-12-02" version="1">MALKYVLVIFISVHLQLFTTEAVQEIWEKCSLSCGGGVQRKKGMKNVTRMCNLLNCPGDAGCLSVHYTFDTLMDGRAYDTSNNANHGTIAGTAKLENNGKFAKCLHLPKHSNVSLGAKGFHNRPSSAITVALWVKTTSSTGKHELFHTCASDVANGKAQFHFEINDGKVRWLHRDHMERTVFNVISESSVPTDTWTHIAGTYRTSTRVAKIYINGENGKLSTNSQLQKFGKNARVDALSPDWGCANIGDYRNERPLDGYIDDFFIFKCELMAVEITDLYQSGSFKRHGIPVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAX9</accession>
    <name>A0A6S7GAX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062274</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001404">
        <property type="protein sequence ID" value="CAB3988915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAX9"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="416" mass="48455" checksum="2ABEE1E0AF13EE6F" modified="2020-12-02" version="1">MSLKTSKVPQKWKSANLLPLPKESPLNSCNQLRPISLTDIIMRLFEKCVYKSEIEPITRNNIGPDQFAYKKGHNSTMALIKSQHQWLEWLDKNANYVRVLSFDFSKAFDSVPHDLLFEKVKKLPINPYVVNWLISFLENRIQRVMVDGMVTEYLYINRGVPQGTVLGPVLFSIMVDDIKTADPSNALVKFADDLTLGVPGNESGDTSRSEAACLQDWAEENRMPLNLEKTYEMVVRRHTSVVLPKLIPSIKRKTWLKLLGVTLQDNPCNWDLHFEEMLKKASGRMYIMRVCKYYGLSIKQLDLLFDSLIMSIFTFAIELWGCAYDGKYLNQIDKFIKRAHKNGCISKRTHIKEIRDKRDKKLWNKITSTEDNALLELLPEKRSRLLRPRGHEYELPLVRTERFKRSFINRCLYNFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBR1</accession>
    <name>A0A6S7GBR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transmembrane anterior posterior transformation 1 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A039042</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TAPT1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000542">
        <property type="protein sequence ID" value="CAB3982800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBR1"/>
    <dbReference type="OrthoDB" id="29023at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036064">
        <property type="term" value="C:ciliary basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045724">
        <property type="term" value="P:positive regulation of cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008010">
        <property type="entry name" value="Tatp1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13317">
        <property type="entry name" value="TRANSMEMBRANE ANTERIOR POSTERIOR TRANSFORMATION PROTEIN 1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13317:SF4">
        <property type="entry name" value="TRANSMEMBRANE ANTERIOR POSTERIOR TRANSFORMATION PROTEIN 1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05346">
        <property type="entry name" value="DUF747"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="228"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="287"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="355"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="109"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="590"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="11"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="50"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="590"/>
            <end position="603"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3982800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="645" mass="73676" checksum="EBF99841E795BF61" modified="2020-12-02" version="1">MEDINKTSQTQEEHLNKFEKNKKDTNCSTDSENAELENTDEQNVPNSVHNSSDISNTNSNSVKSENNSENSEVNEPCNSITNELISTDHGSSCPETPTNFTSTYTTTHNTVHKRNTGNTESSKQSAKSEQEFVIHHEHCENLDGVSNNDSFENIKDSKSSVQERKPVDLPEYLIKGLTQNTAKGFSLFHYLKVEVTRGYLFEEQEEKFLDQREKIYTFMKTPRELEKLMWFGFLLCLDCFLFVFTYLPVRVLLAMLQLLGNVVCLKFLRNTLSLLEPHQTCDLLRGFILLVCCVAMNSWCDLSILYHIVRGQSVIKLYVIYNMLDIADRLFSSIGQDTLDALFWTGAEPRQKRRFVMIILHFGLASVYVFLHALLVLFQAITLNVAINSHNKVLMVVMVSNQFVELKGCVFKKFEKNNLFQMSCADIRERFYYVVLVSLVTLRNMHELQWNLDHLYELVPSVALLLCSEVFVDWVKHAFITKFNCISSEVYREYRELLALDAATSRLFGQQRACSDHFDLVSRRLGFIPLPLGCVVYRVTSQSVQISGTAGIVVLVLVYLWLTSVKILNSIILLGLSSHYVMNKTSNINETKPNMESSPSPSDLQLPVSDPLDRDQNKVGTVSKPRQVKALNEIDRYTLCSNRIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEC4</accession>
    <name>A0A6S7GEC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cholesterol 24-hydroxylase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A041621</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001221">
        <property type="protein sequence ID" value="CAB3987719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEC4"/>
    <dbReference type="OrthoDB" id="1470350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033781">
        <property type="term" value="F:cholesterol 24-hydroxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006707">
        <property type="term" value="P:cholesterol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039983">
        <property type="entry name" value="CYP46A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24293:SF0">
        <property type="entry name" value="CYP46A1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24293">
        <property type="entry name" value="CYTOCHROME P450 FAMILY 46 SUBFAMILY A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0349">Heme</keyword>
    <keyword evidence="2 3" id="KW-0408">Iron</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="2">
        <location>
            <position position="364"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3987719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="419" mass="47895" checksum="C9034EE7E3043558" modified="2020-12-02" version="1">MFVIWFFHVPLIVISDADIARQVLVVKNLPKDHFGYKRFQYVYGQRFLGSGLFSDLNRLTWETKRRTFTPLFHRNKLFDGFPTLNSCCDNFLSRLEKYADGKTEISLADEFLLVTLETILKWSCNLEMNNDDRLVFEKNFKNALHGISLSFQSPATAYMPWSNLRRRCVEGARLTRVTAKSVVEMRQKDIDAGKEIPEDALSYVLKLKEALPNCDIEDLVDMVVTVVFGGMDTTGNNLCFTALSIGLNPDVENRLRKEIDTVIGESEEITAKDIMSMQYLTQVVKESLRLHPPTPALTRRTDKDTMIGSVMIPGDTPIMVNPYVIQTHPDYWEDPHDFKPERFASVENLHPYAYFPFSLGPRRCIAPQLADLQVKLVIARLLKRFKFKLLPGQTLKLAENISFGPVGTVRCTLAFADQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GV13</accession>
    <name>A0A6S7GV13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">5 -methylthioadenosine S-adenosylhomocysteine nucleosidase-like isoform X16</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A064693</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003055">
        <property type="protein sequence ID" value="CAB3997244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GV13"/>
    <dbReference type="OrthoDB" id="6133115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008782">
        <property type="term" value="F:adenosylhomocysteine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008930">
        <property type="term" value="F:methylthioadenosine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019284">
        <property type="term" value="P:L-methionine salvage from S-adenosylmethionine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="entry name" value="Leucine Aminopeptidase, subunit E, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="entry name" value="Nucleoside phosphorylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032171">
        <property type="entry name" value="COR-A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46832">
        <property type="entry name" value="5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46832:SF1">
        <property type="entry name" value="5'-METHYLTHIOADENOSINE_S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16095">
        <property type="entry name" value="COR-A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="Purine and uridine phosphorylases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="126"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="COR" evidence="5">
        <location>
            <begin position="523"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="domain" description="Nucleoside phosphorylase" evidence="4">
        <location>
            <begin position="926"/>
            <end position="1143"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="867"/>
            <end position="894"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="876"/>
            <end position="886"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3997244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1181" mass="134792" checksum="78B128A23AD9650E" modified="2020-12-02" version="1">MDYSNMPLEEKRSYYECGNRYVTLDQVLPWPDYVKENHQFFTRKGWLQKDSEFTTDNDHINRKVSLWRGDITRLEIDAIVTNDCDYDIYEAAGEGFLEEYSKLNSCDNDEAEITSGYKLPAKRKHFAVYLLHTSITVGRIIFGGFFLHIYPRLMLENFPCTTKNGTEETEDIEEEEYRRAYLQALHEGEAKNNRIPIMVVGQDRGGKTSLMRRLLGLPFNKDQPSTTGIDVNVIELTEQNAEDPWKKTEVKKFMTSESEAETVLYKKTAEYLDGGVQRNLEGDAPEPLKPVMQVKPVMPVMQVKPEMPVKPVMPVKPLLRKEISKIKLQRSTEHDQNEVLRVFVSDFAGQSIYYDTHGCFVKPHCPYVLVYDLSLEFDKPAVPKFKTSNEEEEIEMNNPHLNTNLDNFTSWLKFLQGLGECQDLQFPDKSGHFTTAKGENFKLPPVLIALTHSDEVKGNDSRIDCVQKRIKKVLSGGKYENVVPEFFVIDNTLEDDDGDDVRKVRRKLFDLSNAVLNQEILMPVKWLNFEVALSRKDCKYIPVDEAKQEAKACGVGEFDQAIKFLHRQGVVVHHSGSSKVVLDPHWLMNRFTKVISMPGRLDALSRYTLDVFRQNGILFREYLQKLEDGKLLEELMQKFNLICLCQHEGKTAFYVPSVAPAMKPGKELEASNVPSLFVTFPRKLVPMGLFTKLQVKLISEWEKRFPNQQATPFFYCNYSLLPLIIDGDVYDVCLIDLHEFIKVAVFPKQDGDHFKFASHLKTTLKKCLDDLKSPDQLLFSMTSYDLEVECTCCFGKEERKCSRHHEIQCHSDRCGHRHFWKLSDLQRLYNDKSPAVCRTDERSSKVFDIKSVKIWLNTVPDVAMVEDSSNFRRPNETSSEASSSGNDRIAPLPPELNITLPTARDFDSEPYYWSSNEIQSQLPTDILLITANDHEFNACYSYMKHVQRGYSTKLGMVYFGRFGNQNNPNVRVALMKSWQGPIEAVIAVKNAAEILHPKVVLFVGICASMGRAKAKLGDVVISAKLATYDDKKFKTDGAVVFHSTKANVSRNMARLILNAAHGWKPPLKDPKSLDVEVHHDAVMLSGSDLVNNLEKRQELLNSFPDALGLEMEGAGLYAAVYDLGIEWAVIKAVSDFADGSKEKTKLWQPFASAMAASVVYNMFKYPVVLKDWRHYNAEGHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZ51</accession>
    <name>A0A6S7GZ51_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Reverse transcriptase RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A069461</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002969">
        <property type="protein sequence ID" value="CAB3996885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZ51"/>
    <dbReference type="OrthoDB" id="5974805at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="369"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3996885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="594" mass="67259" checksum="5AE2B3555682DFA2" modified="2020-12-02" version="1">MQTPPRTVRCINSWGDPVQTGTGLTAVASDVMNTVTNGDALRTIDQLKFRDPDHFRAGKLHNHVNECETLLDDTPTPQQNRVLTWIRGKVSIFEYFRPFKGQTYDSARPPPAQFKNNPLCQQFADFVSNTLLQHVQTGAVSLLGRIEDVAPPYLVLPLTIEPTKPRLCHDVRFLNLWMTDIPFKLDSVTHLPQYVPKDTYQTVLDDKSGYDHLLLTEASETYFAAQSAIFIVAYYLVWLGYFLGLSKSISNPSQIVPYLGFLLDSVEKAFHLIPWKQEKFLELLCSVLTHSTVSVKTLQRLAGKCISFSLAVAGAQLFTREMNLAISKGLHTHRTVRIDTRLREELEHWLFLETWNQPLPWREECHVRISIATDASGSGWGVSVGIEENNTTSDYWTEDERKYDIAAKEALALNKTLEAFSDFLQNKWVDAQVDNKAVITACQQREEFGGPHGHTCDLMALDSNTMRDLNGSLLPHFTPTPTPASSGVNIFAQNLRKSVRYLDWPYIFPPPILIGPLLRFLRAEECNCTLVALITYPRQYWWPILQRHTAKSLCLAQAGESNALLIPSHNGFVPQHATPGELWAFSLEFNEEDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZT1</accession>
    <name>A0A6S7GZT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">WD repeat-containing alr2800, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003021">
        <property type="protein sequence ID" value="CAB3997095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZT1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="419" mass="47429" checksum="272AF3A4CF740F7D" modified="2020-12-02" version="1">MRHFATSTCSLENSQDLFHILSKSEIFLSLIGLPYGASLDIGCPARAVLNIPKLYDLVIEQCRTQKCYDANSKLHVSKYFQTIAFSFFFSSEYLEIPQHIREDVMLLSDGSGAKLGCYEEISLISKGNVKLGMECIEKHLDGLQTCADQQLVKCLCLQLLALLYTDLNECNQSNKLRREAIEICKEIGNYNLFVIGDCEETLSMTQKEYKGEQLILFVYLLTMWSKVIFNAETQLYFLNFVHQLEQQLENNAYNAPQYLFPVFTYGDSLLAILGVGVGQEVLLDEKVTFLKKSVMSEDCCFLTDRPRTFPIRCSERLLHCYNFQIVRDDNEIKQGPSVDTCRNALDFSLKQCGKQHWNTGFCYLELGLAENNAENFISALNAFDQALEIMTAAHGGTSISNANLADVYIGKGCLYRIHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H219</accession>
    <name>A0A6S7H219_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Visual system homeobox 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A068210</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001657">
        <property type="protein sequence ID" value="CAB3990431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H219"/>
    <dbReference type="OrthoDB" id="6159439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017970">
        <property type="entry name" value="Homeobox_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050649">
        <property type="entry name" value="Paired_Homeobox_TFs"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24329:SF543">
        <property type="entry name" value="FI01017P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24329">
        <property type="entry name" value="HOMEOBOX PROTEIN ARISTALESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00027">
        <property type="entry name" value="HOMEOBOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 5 6" id="KW-0371">Homeobox</keyword>
    <keyword evidence="4 5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Homeobox" evidence="8">
        <location>
            <begin position="45"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="Homeobox" evidence="5">
        <location>
            <begin position="47"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="187"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="188"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3990431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="24804" checksum="406F15CB8E6F26C3" modified="2020-12-02" version="1" fragment="single">FCRTVRFEQISKQKQGRKMSTNEQGFNRLLHRPRKEFGSERKFGAVTRRRRATYKRWQVDVLEEAFEVNCYPSTLMKKILAARLNMENIQVQVWFQNRRARMKKDGPSPYTRNYPPSSVHTRYYPQSSSYVRYNPAHLPYDAEILTSINRRQPLCSHVPRHPLVTPMFSRWDLDRVLYQHYPRHACSSRATMTSSPSQTSDVTTEKTEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H551</accession>
    <name>A0A6S7H551_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073194</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001833">
        <property type="protein sequence ID" value="CAB3991361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H551"/>
    <dbReference type="OrthoDB" id="5971197at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="45730" checksum="B48E220441EDC093" modified="2020-12-02" version="1">MGVNIEFNDQHPSQYAAKVRHFNMSETAIIGNKINKLLSKGVIIPSIHELGEFISSIFLRLKKDGSYRMILNLKSFNEFVKHRHFKMDTLDAAVKMMKPNCYMASIDLTDAYYMVPVHAADQKFLKFEFLGRLYQYTCLPNGLSSAPRIFTKLLKPVYSTLHSMGHMSSGYIDDSYLQGDTPAECSRNISATKTLVTELGFIPHPKKSVTVPTQILVFLGFILNSINMTVSPTQEKIDKTVATCKLLLAKPATTIQQVAEVIGLLVSNFPGVEYGPLHYRELEMAKSAALTLACGVYGAKMTLTDSCKHELEWWITNLPNSTRKIIHGKPFAIIQFDASTQGWGAVRKGTSTGGRWSTIEQQAHINVLELKAAFFALKSLCVNDRDGHIHLQLDNTTAVAYLNKMGGGDTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6I7</accession>
    <name>A0A6S7H6I7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Splicing factor 3B subunit 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A075995</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RSE1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003361">
        <property type="protein sequence ID" value="CAB3998456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6I7"/>
    <dbReference type="OrthoDB" id="436637at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:001721">
        <property type="entry name" value="Spliceosomal protein sap, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000031">
        <property type="entry name" value="Splicing factor 3b subunit 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018846">
        <property type="entry name" value="Beta-prop_RSE1/DDB1/CPSF1_1st"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058543">
        <property type="entry name" value="Beta-prop_RSE1/DDB1/CPSF1_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050358">
        <property type="entry name" value="RSE1/DDB1/CFT1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004871">
        <property type="entry name" value="RSE1/DDB1/CPSF1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10644">
        <property type="entry name" value="DNA REPAIR/RNA PROCESSING CPSF FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10433">
        <property type="entry name" value="Beta-prop_RSE1_1st"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23726">
        <property type="entry name" value="Beta-prop_RSE1_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03178">
        <property type="entry name" value="CPSF_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="4" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0747">Spliceosome</keyword>
    <feature type="domain" description="RSE1/DDB1/CPSF1 first beta-propeller" evidence="9">
        <location>
            <begin position="169"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="domain" description="RSE1/DDB1/CPSF1 second beta-propeller" evidence="10">
        <location>
            <begin position="413"/>
            <end position="734"/>
        </location>
    </feature>
    <feature type="domain" description="RSE1/DDB1/CPSF1 C-terminal" evidence="8">
        <location>
            <begin position="831"/>
            <end position="1156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="72"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00038266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF03178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF10433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF23726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3998456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1190" mass="132385" checksum="1D1875604BDC0336" modified="2020-12-02" version="1" fragment="single">NFKNARDSKNTRNSKNTKNSKNARNRGKFHSFLKTISLRNVSFCITNGEIDNQMIKLIINFPFVMQRQPKGAGKQLEVGRQAASERRQEAGGRANAGRGRGKSSGWAGNQVHNVRSSMQTTPTFSLCLDTLKFCFFIYKTLHIQDQFEPFGKDLQIESDQDHTGEAAQTTQQTVTFYELDLGLNHVVRKYSEPLEERGNLLISVPGGSDGPSGVLVCSENYLTYKNFGDQQDLRMPIPRRKNDVDDPERGMIFVCAATHKTKSMFFFLLQTEQGDIFKCTLETDEEMVMVTEIRLKYFDTTPIASSMCVLKTGFLFVASEFGNHYFYQIAHLGDDDEEPEFSSNMELEEGTTFFFQPRALKNLVLVDEIDSLAPIMSCQIADLANEDTPQLYAACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKLNKLEEFDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALLQVYPDGIRHIRADKRVNEWKSPGKKTIVKCAVNERQVVIALSGGELVYFEMDQSGQLNEYTERKQMSTDVSCMGLGSVPAGEQRCRFLAVGLNDDTVRIISLDPQDCLQPLSMQALPDSAESLCIVEMGGKEGSEETRQGGGLAGLFLNIGLENGVLLRTVLDTVTGDLSDTRTRYLGSRPVKLFPVKMHGSDAVLAMSSRSWLSYTYQSRFHLTPLSYESLEYASGFSSEQCPEGIVAISANTLRILALEKLGAVFNQISHPLKYTPRKFVIDPESNNLIIIETDHNAFTDKGKADRKQLMAEEMVESVADEDKAAVAQVAAEFLQEDLPEQQFGAAKAGPGMWASVIRVFDPIKGETLDQVELKQNEAAFSVCVCHFASKGSEETYVLVGTASDMVLNPRSCSGGAIHTFKLVAMPDDGGQKLELMHTTEMDDIPSAIASFQGRAAVGVGRFLRIYDLGKKKLLRKCENKKLPNLIVGLHPVGQRLVVMDVQESFHFVRYKARENQLVVFADDINIRWMTCQCLLDFNTMAGADKFGNVFVVRLPTSTSDEIDEDPTGNKAFWDRGLLHGAPQKADTICNFFIGETVLSLQKATLIPGGSESLVYTTISGRVGMLVPFTSREDIDFFQHLEMHLRSENAPLCGRDHLSYRSYFFPVKSVIDGDLCEQFNSLESSKRRNIAEELDRTPAEVSKKLEDIRTRYAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7K4</accession>
    <name>A0A6S7H7K4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">N-acetylglucosamine-6-phosphate deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003796">
        <property type="protein sequence ID" value="CAB4000279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7K4"/>
    <dbReference type="OrthoDB" id="9986749at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="entry name" value="Urease, subunit C, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="73" mass="7908" checksum="67ADA1EECCBA09EA" modified="2020-12-02" version="1" fragment="single">MLKNNVLIFAENVVLPKGEVREGPFYVVIKSGIITKISKAESTLSTVSQCDRCDAVACHLLAPGFVDIHNHGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8V6</accession>
    <name>A0A6S7H8V6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046394</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003911">
        <property type="protein sequence ID" value="CAB4000739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8V6"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14099" checksum="0FEB54D7948967F0" modified="2020-12-02" version="1" fragment="single">MFNLVVLIDLKKAFDTVDHQILLRKLELYGIKGEALTLLKSYLTNRNQKCQIKNSFSTERLIKCGVPQGSILGPLFFLLHINDLPQCLNKKKPRWFADDTNLTASGDSVIDLETAANSDMETSEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBP1</accession>
    <name>A0A6S7HBP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">WD repeat-containing 55-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A020151</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WD repeat WDR55 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004345">
        <property type="protein sequence ID" value="CAB4002404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBP1"/>
    <dbReference type="OrthoDB" id="2288928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050505">
        <property type="entry name" value="WDR55/POC1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44019">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44019:SF20">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24796">
        <property type="entry name" value="WDR55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4002404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="333" mass="36878" checksum="9C8BCF538D9FD2AF" modified="2020-12-02" version="1">MADSALPCALDIADIEFPSQVFDLSFHPNRNVIASGQINGEVHVHKFGKEGNTLLMELNHHKKACRAVQFSADGLYLMTASKDKSIQAVDMNTGSVCRTIRKAHESPINCLKILNQNLIATGDDDGGIKFWDTRTSSSVGESSENKDYISDMECNRDNRTLLAASGDGTLSVFNIRRKRFEARSENQENELLSLVIIKNGSKVVCGTSDGVLHIFSWDHWSDINDRFPGHPMSVDACVALTEDIICTGSMDGIIRAVGILPNRFLGVVGEHGEFPIEQIHLSPDRNLLASCSHDQKIKFWDVRHFKEAALSEEIPTKTKPTKSTGTENFFEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HG74</accession>
    <name>A0A6S7HG74_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A064515</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020002576">
        <property type="protein sequence ID" value="CAB3994980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HG74"/>
    <dbReference type="OrthoDB" id="5871067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3994980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="708" mass="82426" checksum="EB1C35A61D56F9DA" modified="2020-12-02" version="1">MALSHLTTERVLAQIERVIQSNHEFRLNDSVKVNLVHVEMPNGGTGTKRSEINLEKHLINKRAIVRIQNKDDLCLAQALVVSIAKIENDSRYKTISDFRCSLQTRLAHDLHQEAGVPIGSCGMDHVKQFQAYLTDYQINIVSKEHQNSVIFSGLDKEKRIYLFLHDNHFDVITSMPAFIARKMYCHTCKKGYDHQRDHLCGDMCKLCHFQNCPIVSWISCSDCNHIFKSQECFDRHKQNVGNAKSICLSTAKCPHCNCVFERTQLRPDLHHCGLKRCSTCEKYVGIEDHQCYMQPVKEKPPRETGLCDDEADEDVHESGYNELLFFDFECIQENGTHEPNLCVIQNEAGDEWLFQGDNTRNEFCEWLFTKEHEGCIVVAHNFQGYDGYFIQQYLHENGVIPEVIMRGAKILTLYVPMLEIKFIDSLSFIPMRLADFPKTFGLNELAKGYFPHLFNRKENQNYVGPLPPSPYYHPNGMNPAEKETFLKWHQELKENNYVFNFQEEIVSYCRSDVDILRRCCLEFRELFRDVTDIDPFEKCLTIAKHIAILPPHGYHPGIKQSNIALKWLSYTAEKNDVYIQHKQNGGEKTVGQYSLDGYDEETHTAYEFHGCFWHGCLKCYARDTVNKVSEKTMHDLHQATMEKTQYLKDRGLHVVEMWECDMKKELEHDEDMKQYFEDYDVVDPLEPRHAFYGGRTNATKLFHECKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGQ4</accession>
    <name>A0A6S7HGQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001898</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002611">
        <property type="protein sequence ID" value="CAB3995160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGQ4"/>
    <dbReference type="OrthoDB" id="5949069at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19022" checksum="48D32024D1D17E8D" modified="2020-12-02" version="1">MTRMNVVLLLNCDAANEKAGLRQAHNVLRQLCDNGNKVTIFECKQTARFVFEEPASLLSTKILDQRFPKRIAEADATLLITDKAATDCPACVRKVTNLDKSVYVWNSCGINCILLGGSIHSRQAAMQLHAILEERNYYPYMANVLPRQCSWHNMYRVDQSMETAGPCVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJE2</accession>
    <name>A0A6S7HJE2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A037300</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004588">
        <property type="protein sequence ID" value="CAB4003290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJE2"/>
    <dbReference type="OrthoDB" id="7615066at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="104"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="8">
        <location>
            <begin position="316"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4003290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="408" mass="46780" checksum="59D622A59B01FF00" modified="2020-12-02" version="1" fragment="single">MLPLPNRSELPGLYNWRNGIMSDPSKIEAIQSWPEPRNVAELRSFLGLCSHNCRFVKSFADKVQSLNQLLKQGTPFKWTEECQTSWETLKRCLTSTPVLSYPCPEEDLILDNDASNVGLGAVLLQTQDGVECVIGYYSRTLNKAERNYCATRKEFLAVVSSVKHFYHFLYGRHFVIRTDHSAMQWLVSFKDVQGQLTRWLQNLQQYDFTIVHRAENHPEEESSRLATLTPQFELSNGDNIVPDTIKKLQAKGADIGSILKWLNEDTSRPEWPIVAPCSEVTKTLWAQWDSLCIHGGCVCRVWENTSSSAFHYQLLVPRDMRKEILMELHGTQTTGHFGINETIQRLKQRFYWPRCQTDVKTWIKECDACLSRKGPRNKQKAPLQLYTVGAPMERIAIGIMSPLPVSKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HM21</accession>
    <name>A0A6S7HM21_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Protein Wnt</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A041390</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Ligand for members of the frizzled family of seven transmembrane receptors.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Secreted</location>
            <location evidence="1 10">Extracellular space</location>
            <location evidence="1 10">Extracellular matrix</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the Wnt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002932">
        <property type="protein sequence ID" value="CAB3996720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HM21"/>
    <dbReference type="OrthoDB" id="5945655at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005125">
        <property type="term" value="F:cytokine activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005109">
        <property type="term" value="F:frizzled binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060070">
        <property type="term" value="P:canonical Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045165">
        <property type="term" value="P:cell fate commitment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.2460.20:FF:000001">
        <property type="entry name" value="Wnt homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2460.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005817">
        <property type="entry name" value="Wnt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043158">
        <property type="entry name" value="Wnt_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12027:SF101">
        <property type="entry name" value="PROTEIN WNT-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12027">
        <property type="entry name" value="WNT RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00110">
        <property type="entry name" value="wnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01349">
        <property type="entry name" value="WNTPROTEIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00097">
        <property type="entry name" value="WNT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0272">Extracellular matrix</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0964">Secreted</keyword>
    <keyword evidence="6 10" id="KW-0879">Wnt signaling pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3996720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="39782" checksum="FD897A17EDF96706" modified="2020-12-02" version="1">MAMLIFLLAVMLHCVVADRWMSIAAVSGSTFKNENMCHNLKGLNRKQVRVCKRNVELMTSVKEGAEMAIRECQHQFKYRKWNCTTINKKNEPVFGNALNKGTREAAFVYAIAAASVSYSVTKDCTSGELNSCSCDRSLKIKDRKKTNENWRWAGCSDNIHFGNSFSKSFLDARVRERQHFSSRSRILMNLHNNEAGRRILLNNMVKTCKCHGVCGTCALKTCWRRLPPIRHVGDKLKDKFDGASLVKEANTGGRRILVPKYEKLKPPTISDLVYLDSSPNFCAPNKSTGSLGTSGRVCEPGSRAIDGCDLLCCGRGYTTQNVVVEEKCECKFNWCCFVRCQTCRRNNTVHTCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQZ4</accession>
    <name>A0A6S7HQZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A047136</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005956">
        <property type="protein sequence ID" value="CAB4007914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10040854at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001965">
        <property type="term" value="F:G-protein alpha-subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005092">
        <property type="term" value="F:GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000132">
        <property type="term" value="P:establishment of mitotic spindle orientation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052386">
        <property type="entry name" value="GPSM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954:SF1">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13365">
        <property type="entry name" value="Trypsin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="14"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="687"/>
            <end position="721"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1089"/>
            <end position="1250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1340"/>
            <end position="1395"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="67"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="492"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="1125"/>
            <end position="1249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1361"/>
            <end position="1390"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1714"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4007914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1714" mass="195379" checksum="1D17BE4DF3A51763" modified="2020-12-02" version="1" fragment="single">LEIATERGYKQEETNAYLGLGHAYRLNNRIQTAIQYYAQALGIAIERRYEQEKTNAYLGLGHSYRLNNQIQTAIQHYEKALEIATERGYKQEETNAYLGLGYAYRLNNQIQTAIQHYEKALEIATEQGYKQEETNTYLGLGHVYRLSNQIRTAIQHYRQALEIARERGYKQEETNAYLGLGYACKLKNEIRTAIRHFEKALKIAAERDYILQENLTRNEIKVLSKSADLDAVVKSYYTDGVNISDTSDKALQLQDDTAEYVTLTDIKNENIRDDRIASAEQLFILGHCYQTEGQNEEAIKSYEQAVQIADEIDHNETKAEAHQHLGNVFTGTSEYKKAIEHYKKARKIFPGLKSDEMELIANQWLGYNHLQAGQYQESIEYYNEVVTLASQLGCKTREVNANMGLGSAFSYIGNFEFSEEYFVKSIILAELCNDKGLEREAHTNLGHIYYKSCKFDAAVKSYIKVQEMSHDLGERKAEANACLMLGHTFRQLKQHEKAIESYLKALNINKEREDKGNLRNSSEKAQEAIIIEWCGYCCSFIAGQHQEAITFYEKTKEIAKQVGEKYQEYRTNQAIGNIVCNIGNYAKAKEYYQEALTIAMELGDRHCEGTSCLNLASVCSKDCDYEIAVEWYEKAADSLKIMFNDHVLKKKAHIGLSVAWFNLGNTKKAIELIRRVKKFATEQTVQDHSNVDLTHQRRKSGKEISSLQTSDSRTETEMKGLQTAGPVTEWVNLADEKACYSSRREQLPNEDLARLEKHIKEFHRLYVYTHRASSQDTFTEKLRKSMTRNVKSSAYRSMLNSENRDKFGKKDGKFVRNDKHVFNFAKEDLLNNSSTKMPARLLEPLSFYSKSIGQISCGTIQGTCWLVRDTLVITNHHVYMMINTEREKLQIPNLPITVTFDYLHPGQREHVVTVEVDEERDPQLESCRLDYKFLRLKENECLGGRVPLGPIVRSGQLQEGLVTIVGHPAGSEMHVETCVVVQCWSWREKLVQRHEVYAGLHMTNAELLDSTERYKGCLPHDTSLFTGASGSPVFDLNGNIVALHTQGYTLNVEDGQCSLMEFGVQFNAICDDMERRHIDVKEFFPNHNLDVDEQSMNQDPNEETVSEDPYGVTQESGLIAGTKRKYTETKQKHEDAQQEHEDAQQEHKDAKREHEDAQQEHEDAKQEHEDAQQEHEDVKHEHENAQHEHEDAQQEHEDAKQEHEDAKQEHGDAQQEHEDVKQQHENAQQEHEDAKQKQETEPKHEEINQNEKYNWFKTAFLDSRHKVKKDIHQKLRSFPWLCGAYGQTGPNKEIDRPHIFLTVQKGVDTENVLRDLKKEFNCDNPREYFELLQEPDKKPKIKFLGGHRNGSIDSESDESGSVESGSVESGSVESGSVESESDESGSSTSSTKLVAPGGGVISGSCRFDNVRNLMRVPEEGEKVKPEIHGTGTLTLLCYKNGQHYALTCFHVGCANDENSLNDTIKKKDDIQKIRRLRKHYAAYAKKQDYYFQKSPVENNNELFGDDGSNYECLGHFDRYCLNDECDIMSLKIADGVEIDCKVVDVTRPDWDEVWNDLHNRVVENPGQNPVDVNKVGFKTGETQGYIVELDFSYGNASGLEDGSEDGSEDVSEDVSFHDATVVKGCSGLFLEGGDSGSPVFFHDKDKKKQVFAYGVFEMDELQLPQQHDATKSTGPYYICFNLETALEALELKEAACFGVCSGNGESENNNNPVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HSJ4</accession>
    <name>A0A6S7HSJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Zinc finger OZF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A083505</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the krueppel C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006152">
        <property type="protein sequence ID" value="CAB4008534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HSJ4"/>
    <dbReference type="OrthoDB" id="4748970at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000075">
        <property type="entry name" value="Putative zinc finger protein 536"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24393:SF34">
        <property type="entry name" value="PR_SET DOMAIN 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24393">
        <property type="entry name" value="ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13912">
        <property type="entry name" value="zf-C2H2_6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="9"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <keyword evidence="7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="398"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="426"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4008534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="435" mass="50178" checksum="994A7442B9F666B2" modified="2020-12-02" version="1">MEERHNHMETAHTAECSICKKIYTSSYLKEHMTFHYESSRVTCNVCSKVFSSISNLRKHEKKHENRGIPIRDKRRLFKCSECPETFQTQKFLEVHRKKHVRIVPIQCNDCGEVFAQKNLLRRHQAVVHKGIRPFSCKYCDKTFTQRGNLARHCRQAHAEKNATDSRLTKEKFLCRRRGCNQTSFLSRELYIQHLQQHSGDTRIYSCENCSCVFSSAGNLSKHRKTFHGNNVTKTNATQSVVAPVTAPVAPPELEAKYHCSQCQRPFQNHFQLNRHMRVHKEKKKELYKCDDCGKIFMTRSGLSKHIRYIHQGTTAVRKPKEKPKTLPAKPKVEVVKSELTCEKCNKTLANVNSLAVHRQLHFGLKPFKCEFCNTRFTQKCNMKRHLGTCKIAIEHSQNSPKADKVTPLTRGDSGPSSSRSEHSARITEQPSSPVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVS7</accession>
    <name>A0A6S7HVS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A007691</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003071">
        <property type="protein sequence ID" value="CAB3997317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVS7"/>
    <dbReference type="OrthoDB" id="6602803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12407" checksum="02EF730B39238B3A" modified="2020-12-02" version="1">MGKTKCFTTEVQGIDMNIIDAIESFKATITTLEHIRNDSEGLENQIQPTKSVAEQHGIDPDDEYNRHHRQRKKPRGIDDHPETAANLCLVEHYICGTLCPNKCNKGKSGGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZ41</accession>
    <name>A0A6S7HZ41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071530</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007054">
        <property type="protein sequence ID" value="CAB4011174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZ41"/>
    <dbReference type="OrthoDB" id="10066052at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="501" mass="57853" checksum="D22B8F28251EF922" modified="2020-12-02" version="1">MVHIPRSSSQRGGGVGILHKDTLDLKITETVNTFASFECIERLLKLDSTWIRVVVVYRPPVSSVNALSGSMFLSEFSFKTTTKKPSVARKTVSYRRWKSLDVNQFRQSIDDIDIQSVNSLSDLALLYNSALRDLLEKHVPLRSKTVTLHPQAEWFDAKLLIEKRAKRKLERKFRLSNSPEDIRQFNEHSEYYSHLLVTTRQKFYTDKIEANYGDQKVLFQVLDKLLHRENQRQFPPHDNLDNLTNMFADFFVRKIDTIRSQLHLATVDNLLGFESSCETVEKLEYFSSVSEHQIENIIRLTNNKSCELDPIPTWLLKQCIPALPPIITKIVNLSLHDAFMPTLFKQAFLTPILKNISLSTDEENSFRPISNLSYVSKLIEKVVDTQLTNHIQEHNLDESLQSAYKKHHSTETAWVRLHNDILSELDDNKTVLLVSLDVSAAFDTIDHSILLRLLESRKPLFNVGKVMIYDLWPPLHLGLTCQIQLESYRRQTFLSTSTPNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I1D0</accession>
    <name>A0A6S7I1D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transient receptor potential cation channel subfamily V member 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A008186</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003878">
        <property type="protein sequence ID" value="CAB4000601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I1D0"/>
    <dbReference type="OrthoDB" id="194358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005262">
        <property type="term" value="F:calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098703">
        <property type="term" value="P:calcium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013122">
        <property type="entry name" value="PKD1_2_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024862">
        <property type="entry name" value="TRPV"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10582:SF33">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL CHANNEL PYREXIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10582">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08016">
        <property type="entry name" value="PKD_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="112"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="227"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="261"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="299"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="369"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="559"/>
            <end position="594"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="617"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="709"/>
            <end position="913"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="579"/>
            <end position="594"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="636"/>
            <end position="650"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="669"/>
            <end position="681"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="807"/>
            <end position="842"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="850"/>
            <end position="859"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="860"/>
            <end position="887"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="888"/>
            <end position="897"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4000601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="942" mass="108155" checksum="C391DC150574DC6A" modified="2020-12-02" version="1">MNRAKSAKLLVQHGAPAGVHDNVGNSGLSLLIEKLPDVAIEALDQFHSVSTINRKEYFFLNYLEGNRLQNPKSPAYSALEIAVQSQEFDIILHPVMKRLIDVKWQQFGRKGAVFNLCLNLLYAILWTILAVTSPTEGDQLYLPWSRNAWRLVISAIVCLMTIDEIRKQITGTLRTRNHQKKWICWRASELEEDLQFCHPRWPQEGMYLKSEIKSIRDTPLISSGDSWIYFDWFSLILILGTIASHVVFFNINSTTSQVVHARIIIMLLLVLWVRIMQYARPFEGAGPFVAIFAHIINDIINWAILTTLITVPYACAFWITFGEASRNPVESYSDVSSLIYALFSMIVVNDHDFEALQAADATMARLLCGSYIALMAVINLNILIALLSDTFTRVYGNAVANAVMQRAKTILFLEKSLTKKRKREYEAFIKNFGSPETVDLERDISANNDRDEQKAADMLKESVQEIHNLIHERFGKRYGEGKKSDLDHIRESLEKIHQGTITHREKCGCSGIKRKVDMIQELLVKLSNTLKVDISGLDINQQSSSDDDDTLVGQIDEEVQSNQKRRSGWNEKTEGWDYENSTQGTAHNVQGRSPEQQFWSANKAAFNEAYQFEDGESAIGRKARGSSRESASIRGSIDHGQSDYRERRSGDLAQTNRRKFGSIEVGQIGRDEEFSGEDPRDSGLIPYRQTRDVTDGYISRADRRQFRTEVYQKRLRGEGGQSSPETRMRRESNSSREIPCDVMSVQRVDSRQRSSGKIIPRREVRRAESMPPRLFENNSPPRRPKESYYIGAGPRRNSPKNFNTESFRSEVAERRRDRKEIIRGKRSPERRSQFHDRRDSGSLKRRATRQRSPNTTQTYSDDRIREAPEKYYDERQRDAPYKTRSAADSDASESDIAQNTSHEDSQNIAYSDNDVIQKRARRFREKRHLEDWDNRSVKSVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I552</accession>
    <name>A0A6S7I552_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071257</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007660">
        <property type="protein sequence ID" value="CAB4012856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I552"/>
    <dbReference type="OrthoDB" id="9991317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098">
        <property type="entry name" value="RAPSYN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098:SF108">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="688" mass="76684" checksum="4DBB6905AD1A3147" modified="2020-12-02" version="1">MASEKNIAEYDHNKTGLEISTAFGDRLGIASKNANLGNAYLSLGEYQKAIDHYKTGLEISTAIGDRSGIASNNGNLGNAYLSLGEYQKAIDHYKTGLEISTAIGDRSGIASNNGNLGNAYLSLEEYQKAIDHYKTGLEISTAIDDLPGRAINLSNLGNAHRCLGEYEAGTPFLVKSISLYDGMFLDFVPDQNKVSFTTQYFVSHKRLMSCFLSLERIESALLAIDLGRAKELHCCVEKHKNSVDKDMFDYARVIWNRIGSGEERREMEEMKTFLHLGENDTSVLVFAFDLDAFLNVWVLNDEIIFRKLDARLETFQFLIVELLGREKVSVVRNSSFCNSDSVVDTHNQVIFPFEMPNGKTLSKNAFENSACYSDLSNREILERLFKLLVDPVKDLVKGNKLIVVPDQQLFFTPFSALIDENGSYLSNSYSVQITPSLHTLKCTMEQSCDSNFGFALFVGNPTVGIVCLNGQDVTPSDLPNAAEEVKCLSKLFQARPLLGREARKEVILQHLSGASIIHIAAHGETNRGEIMLAPNVSKVQPCLAVPKPESYLLTQQDILNIPLQARLVVLCCCHTGQGEITSEGVIGITRAFLAAGAHCVLATLWPIDDSATKEFMEKFYGELCQETRVCEALRRTQNLFQKHEIEAYRSIKIWGPFTIYGEDAKFRENEIKQIREKSREMFSGLVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I808</accession>
    <name>A0A6S7I808_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052769</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007825">
        <property type="protein sequence ID" value="CAB4013287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I808"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12539" checksum="3367BEFBAFAB8DF7" modified="2020-12-02" version="1" fragment="single">MDPVLTLKRSSQIDVNACIFCHTSLKDEHLRAATDYSRTVVRDAMNLRSKFTAVGNRETISRLEEVINSIDTSSVWHVKCYFLFTSKDKIQRLEKKCNKDEASAIPTSIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG62</accession>
    <name>A0A6S7IG62_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077102</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009211">
        <property type="protein sequence ID" value="CAB4016666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG62"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="186"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22192" checksum="16AC957B222D886D" modified="2020-12-02" version="1">MGSESDEEISNAVREVEEAAKAPQKKAKSTARKTADKSQTESKRDKLIELSRDGAIDKTASFIRKSNKDVVDKLYNEYESQRMSFASDFLSTLIISKFASVLGSFGAVESSEKLSDELLSDKLLKDDVSYLTRMISPNIPFIGLISGGCTTAKHVVAHKWNKKEKPEEISEEAKHILLHSEEECRSTTGETPGMEQNSNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJD2</accession>
    <name>A0A6S7IJD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A079671</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009721">
        <property type="protein sequence ID" value="CAB4017827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJD2"/>
    <dbReference type="OrthoDB" id="6148156at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023779">
        <property type="entry name" value="Chromodomain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051219">
        <property type="entry name" value="Heterochromatin_chromo-domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22812">
        <property type="entry name" value="CHROMOBOX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00598">
        <property type="entry name" value="CHROMO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15882" checksum="9BA6285A6E838BE0" modified="2020-12-02" version="1">MALKRLSTRVDYVQLDNFSSVVLYNNTAPRRKKGKIYEVERIISRKKQKCDYLYLIKWAGWPLHTCTWEPSDNLPSNLIRGYERPPKPSDSRLESTARAFASGILSMLKSRSLGKGYIELEHDCWRCHFEKGETIGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INA7</accession>
    <name>A0A6S7INA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073215</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010336">
        <property type="protein sequence ID" value="CAB4019186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INA7"/>
    <dbReference type="OrthoDB" id="10348970at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008993">
        <property type="entry name" value="TIMP-like_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50242">
        <property type="entry name" value="TIMP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17022" checksum="26092BD82F28D5C9" modified="2020-12-02" version="1">MPKIANVTITLLVFLCGIHQSSQCSPPRDWNPPTITELTEKAPIVVRGFVVKKVGDINLYTACLRISHVYKGSGVKSYICVSRFGSTAACLSDPAYGVEYLFFLNRKINEKLGTEYEARYDTIHSATRVFKKNSEDEVRDGKCCPGSSKSTYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWB6</accession>
    <name>A0A6S7IWB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 ubiquitin- ligase DZIP3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001092</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006589">
        <property type="protein sequence ID" value="CAB4009842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="163438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041249">
        <property type="entry name" value="HEPN_DZIP3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039:SF17">
        <property type="entry name" value="FUNGAL STAND N-TERMINAL GOODBYE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18738">
        <property type="entry name" value="HEPN_DZIP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82171">
        <property type="entry name" value="DPP6 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50837">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="227"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1535" mass="173861" checksum="D13C6AC261154D41" modified="2020-12-02" version="1">MASVNLQEKANFTRISRLLVDKGTEALRNTLDAIHPPANLPAVLNANRTTLLKLKPRVINDTQWDLLFPPSGNPPDSKTFDVTLLTVLLRNLAGLPPPATGWNTMPPDTDNSLGANIARIKLFRNQVYGHVTSTQVDKITFRNLWQKISKALIDLKVPQKEIDDLKTCPLGPEEEIYGQSLKEWVLKEEECKNMLDDLTRGVSLIHSQQKDDREVIEQIHQRVQQLCTSSSSESELPRSTHNSEQSKASEKHSREEQLLQKLAKHNFKSKTRSKVKFFHPGTREWLLKRIYSWFADEDGSRLLLLTAGPGFGKSVFAARVCDIFEEKGRLAACHFCDFSNSNLKDPMMMLQSLASHMCQNIVGFKEKLLDQLKRPYKADSLKDAFQIYLQNPLDELDEEHCLIVIDGLDESATDDKSDMVKLIADNFPDLPRCVKVLVTSRPELSLQRLDHIEVIEIDVYDVDNESDILKYLNVCLPTLAARDEMNHSAQPHHWNVLPAIVRKCEGSFLYAFHVQHELCKRKDLDTMTFEDIVSFLPEGVGSIYQAYFRRLEIELEAAMKRNPDLFKLLELLVAIDTMKAELPLKFVARALGLALDCRETKKIINKVNEAVSCLLYVSDDLITVFHKSVCDWLLANGYDDHEYTVKVSDGEKRLWLVCEQVFQEIKRNVSLGHNLKLTNEVTHALEYGQKYLLACHVKDSFSWFVDMIIVYVLLHVYPKSTRPVQDILEQVLRRDVVLSVQLRQRFSWHFAEISYLGNHNLLLVFDYESTKPFSYLESVLHYSPEGCFTDDERKIAEVILAKSPRCVKHSNAFGMKTLKPLDTKLFHSLIAAVGVSSSKKLAAIALENGIICVLSLPELIQLWQYSTGYKCISCCTFALDDTFVLYGKLETVLNIEEKKEAAFFGGEVERFKSCAFSPNGKRLITSDGSDTLKLWDVVRRSLVAVLSAGAPVDGCTFSNTGLFIIGGANYANKGVYCVWNSITLQRVDQRSNFSGSMGRKKDGVLLSERCNRCFRPEWKELNPPKGLGIMASMQLNRHLSYVMMSVFDSMLQGKCCKTSTGIYKEVDCFFHLDSQKYLRVIDSIHFTTLAIWEIFTGNPGFLTEGVPILDIAAVEDDHWLYGDEQKVVLFSSVLPNENQLSLSRPTCVLWCSFSPDGTRLATCTSDGFINIWNVDTSQVYQSLRSNLDTSSAACWWSDKYLFVCHVIDTIPSLSRYPVDRTLKIIVTEKQPMPLCSVNNQFLPFSGFLDFFEGYLSFECGYTEPVKVIDVKKIGHPKVVVLPEIQPKMSIAVSSRASFVLGAGIGGYFLWKKNEAQPSVYNVFVRFEHPSRVTRFIFKPNRYECCFSNDSKFALVSFVMWQQRRFVVIDVDTGILAMDEIHDGKRRRLCLAIPKVFCTDRVVIHLTSNMIEIFDLESWKLLESSFQRHLTEAIHSKLSPKGTVLAVPRLTGDMGFLHLCIPKHSSVSNGQKNWERLGGVKFVLPVPSSSGNIPEVKKKVRESLPGPGGFGNIPKVEKRVAESLPGPSIPKVKKTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IX66</accession>
    <name>A0A6S7IX66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Usher syndrome type-1G homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047303</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011450">
        <property type="protein sequence ID" value="CAB4021469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IX66"/>
    <dbReference type="OrthoDB" id="5982475at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="33187" checksum="D75BBF930C317494" modified="2020-12-02" version="1">MSGIYHKAAKDGLLEVLRHVNKRDANKRDEDGMTPVHWAASCGNLECLRILCAKGYCYFSEDGEKDDIYVMRPFPSMWNCRVFHPYGLDPFSGDARKLQGFSRSLEILTYMRSEASRLGMQSGNECSGNKRLDEICAVIFPWDKKELPTPLELVNGVFHFHPKIYEYYTSHPEDKGYLRENKLHFHIRRNKHNVDDSAVDYDEHDRDHDLEKTPCLNSIFGMDFPSKDEQWMYEDSRKFYKWLQPIMYPSVAIYVGEGKFNPVAIFMLAQLAPGWVGGALTAYIWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXZ8</accession>
    <name>A0A6S7IXZ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012976">
        <property type="protein sequence ID" value="CAB4024345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXZ8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="15864" checksum="B27EEB2B51907F5C" modified="2020-12-02" version="1" fragment="single">MIISVIPRNSKTAPPTEPEVFPTPPEQPREQEVLPTTPEQPHEPELPPVQDVLPIPPEQPHEPEVPPEPEVLQIPPVPPEQPRQTRARQPPDRLTYYGPGQSFPAGVFETSATNPISADQWQPQRKAWMTNPPHLPFYPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3F4</accession>
    <name>A0A6S7J3F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014168">
        <property type="protein sequence ID" value="CAB4026396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3F4"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15672" checksum="0FE22EB4B1A11A76" modified="2020-12-02" version="1" fragment="single">MVALYLEGRTQQVQINEVLSEPLTIITGVPQGSILGPLLFLIFINDLPSFLTTTHHSLFVDDSTLLAHGRELPDIKASLSTDLCITFNWARSNHMALNFSKTKFMKIYSKRKYSLLDYDSILYEDFWIEEITSGKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7D7</accession>
    <name>A0A6S7J7D7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A040057</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014169">
        <property type="protein sequence ID" value="CAB4026397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7D7"/>
    <dbReference type="OrthoDB" id="5978526at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4026397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20151" checksum="3DCF0175151E8162" modified="2020-12-02" version="1">MYNGHKRVHSIKFQSVVLPNGLIGNLAGPYEGKRHDSVILQESGLLTNLRQIAFYNNNPLCIYGDPAYPLGVHLQAPFRERELTPAMAEFNREMSRVRVSVEWMFGNITKYFSFVDFKRQMKLHLSPVGKIYTVAALLQNAHTCLYENIVSHFFDLKPPSTMNISGNTHSLSLSCEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7V6</accession>
    <name>A0A6S7J7V6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A004637</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007843">
        <property type="protein sequence ID" value="CAB4013331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7V6"/>
    <dbReference type="OrthoDB" id="10068383at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="282"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="291"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="40187" checksum="7837D94BF2C77D4B" modified="2020-12-02" version="1">MGPDGGKHISINKKLFLVFIFLLVIAVCSFLFILKQKIKADVNSLSVGVTSQVKYHNPNDTKSGECLKNYFEDILLIIVYHFPFYESIPLLKSFYKDAFKNIVICGPDSYSHHYVMVVDIGAGYYGYECAGEAIRRKLAATCDFENIDKEVKSAIIQNCLSKRLRRYALLDSEVTLAKILAKGRAFELSESQATGIENALDSTHISDEVVEAVHPTTKYNNHRDKQHTSFHRQDFYISSECRNCGGPWPHNNNICPAKGKSCLNCGKSNHFAKVCRSARKARVGQQENRRPSKKYHKNKVHKIYGKPSSSESSSEDEFIFTLKPTCRDKTTPQVQISVNTTPINMVIDTGASIDIID</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFA8</accession>
    <name>A0A6S7JFA8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107344723</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018901</name>
        <name evidence="2" type="ORF">PACLA_8A048396</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001009">
        <property type="protein sequence ID" value="CAB3986389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020016340">
        <property type="protein sequence ID" value="CAB4029687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFA8"/>
    <dbReference type="OrthoDB" id="5986609at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16273" checksum="E2C6131FA7338C6A" modified="2020-12-02" version="1">MADLPPDRLNTPPPFTNVGFDVFRLWTIRTRKLQGGTANSKRWGLVFTCLNCRAIHIEILETMDTSSFICALRRFFAIRGPLSVLRCDRGTNFVGRKSELDEAMKGMDHREIEKYVIEQKCEWIFNPHASIIILGAENCYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JG74</accession>
    <name>A0A6S7JG74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066969</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008838">
        <property type="protein sequence ID" value="CAB4015772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JG74"/>
    <dbReference type="OrthoDB" id="8938395at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="847" mass="96162" checksum="78C431EEC76F4502" modified="2020-12-02" version="1" fragment="single">MGNYFVAKTQDIQTKLNDMVQRLPDFVADNASETITPLHNFTTLTEEVLKLVKGCKKKGCNLDPMPTPLFHNKVTALLKITNDILLKMNSQEVTLLVLLDLSAAFDTVNHNILIDRLNEKVGLQGKALDWFKSYLNNRSQQVSIAKNEATPPGYKLCGHPRPDRIGGGTAIVFRDTLCTTKLAADTTIFYKSPDGDILKFVDLLLSMGLQQHVEFSTHVSGNTLDLVITREVDSILGSPSRPDHLFSDYMAISFGLNSSKPLPSKKCVTYRSLKSINITSFMKDLGESKLCSDAPTQLDSLVSCYNNTLSSVLDRHAPLKRRIVTSRAMVPWYDEEIKLAKKERRKAEQKWRTTKKTADFNKFKSLKNHCTQLMRKAKCSFFSDFVKENSNNQGSLFKAIKGKLVEKNAISFPGHPPSDDNEDTNRFLGFVIQVAQGPLVIGRSWSETALLKVLNDILLSMNSQRVTLLVLLDLSSAFDTIDHGILLERLRSKFGIHGKVLSWFSSYLSGRSQRVMLNGFVCMCHSNLTTHAINVKRSRNLTHAITCSLRLRNFGMNFRKKFLLLSISFKPARTSKQDVVRAMENCVEKIRCWMIYDKLLMNDGKTEFMLIGTRQQLSKLQPINISMSKHITKTCKACFFHLHNIRRIKNKLDYSNSLLYGLPKKQISKLQRVQNATARMPDWLWIYGNILILRPYSQVHNQAPSYIKDLIEIKSKSSYCLRSNSAHTSRSPQNVLITFCGFLCRRCCSYAKRPKTNEPIIWQGSKEQRLKSIAKLNVSNLHSEVIHTNLEDHDKIGYALLNQNLVLVTINEIIVLLSTNQHPNTNKARIIVKVFANLNAHERLTME</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JL81</accession>
    <name>A0A6S7JL81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010592</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016379">
        <property type="protein sequence ID" value="CAB4029750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JL81"/>
    <dbReference type="OrthoDB" id="7486164at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19329" checksum="C94F20B686B8A9D5" modified="2020-12-02" version="1">MASSILPSKFDGDDIVAWLREFDACALANGWKDKDKIKKLPAFLRGSTATHFYATPVAERAPCDAATKKLEQALCPPVERENYLKNLKPKCFALVKIHQFTSGALEDEGATSQQLYATAIKENEPPRPKVMCFRCGKQGHMLESVAVQANAKTVPKCNATNAGDTDTSPVNVGTMRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPI7</accession>
    <name>A0A6S7JPI7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SCAN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A004110</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019197">
        <property type="protein sequence ID" value="CAB4033377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPI7"/>
    <dbReference type="OrthoDB" id="2499658at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057560">
        <property type="entry name" value="Znf_SCAND3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23663">
        <property type="entry name" value="Znf_SCAND3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCAN" evidence="2">
        <location>
            <begin position="14"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="178"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="186"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="254"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4033377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="464" mass="51628" checksum="CAE9A6BCB3CFB48E" modified="2020-12-02" version="1">METVPNRKKQQYDGGHSCTSCKNPCHTFCGEPVGKEGFGKPVLCFNCKDMNPNLVDLEANKGNVTFTNVKTTKARNKQSETSVSIFSVMMKNRDKTVSSKNPVKRKKSGHQKTTGAVCLACYNLYKTQPQWKKKFCFTRYNESSMKEHMKTHRDVSIDNYSNYFVAEDNPKAGEAVKANKSKDQSLLKSSVQVQTDESRKPDDQADLRPTTNCPDEVPATSHVSMDTRDKQAAIESQSAPGELTHAESAPSETTAEKRKVTSISVEDHENNVDWPSTKLPKMSSSLNSAQASITNFLLSDPSAIQESGVNLLSKKNLDYIVDRISGRIIGSSKHSSQSSGSTCTNLPSCTNLTSFLESESHDYELISGGEVHDIRCNTCFTYINDPVALSELPRKPSFALGTSLISGLVISNNDYKLYCNGGCQKWYNFKSRLLNYIIDASQTLWWFFATVPLFDTIFVCRSIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRI9</accession>
    <name>A0A6S7JRI9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Kinesin KIF16B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A043113</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010300">
        <property type="protein sequence ID" value="CAB4019102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRI9"/>
    <dbReference type="OrthoDB" id="3176171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22708">
        <property type="entry name" value="FHA_KIF16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.200.20:FF:000005">
        <property type="entry name" value="Kinesin family member 16B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.850.10:FF:000167">
        <property type="entry name" value="Uncharacterized protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019821">
        <property type="entry name" value="Kinesin_motor_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47117:SF6">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KIF16B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47117">
        <property type="entry name" value="STAR-RELATED LIPID TRANSFER PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00225">
        <property type="entry name" value="Kinesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00380">
        <property type="entry name" value="KINESINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00129">
        <property type="entry name" value="KISc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SMAD/FHA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00411">
        <property type="entry name" value="KINESIN_MOTOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50889">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0505">Motor protein</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043646969" evidence="9">
        <location>
            <begin position="20"/>
            <end position="1171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="510"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="668"/>
            <end position="711"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="787"/>
            <end position="849"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="964"/>
            <end position="1051"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="683"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="694"/>
            <end position="711"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4019102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1171" mass="134881" checksum="54ADFAECD5D1CB7D" modified="2020-12-02" version="1">MLGIVLSIILVFITQGAEGLIPRICEGLYSRMSENSNDKTEFKTEVSYLEIYNEKVRDLLRPSKGKDQYNLKVREHPKEGPYVQDLTKHLVGDYNGIESLMNTGNSHRVTASTNMNDTSSRSHAIFTLVFTQAKFNTDMPSETVSKIHLVDLAGSERASSTGATGERLKEGANINKSLVTLGTVISALAEQSEKAASSSGKDSKKKIFIPYRNSVLTWLLKDSLGGNAKTIMIAAISPADVNYAETLSTLRYANRAKNIVNKPTVNEDANVRLIRELRAEIEALKAMLKKRGTADGIPGIGQAEETRMTERLHENEAKAEELTRNWTSKWKESHKIIEERALGFRYEGAGVKMESELPHLVCIDDDILSTGITMYHLTDGRTYVGKEDAKEKQDIILNGPGIDAKHCILESIEGHVTVHPLSTLCFVNGEVINQSKRLKQGDVLLLGKANTFRYNHPGEAAKLRKKRMFQSMDNLSSETDEIEAKPSYLLYNASLELERQYMEETKRIEEQRTEMERQQKEAADRLEKARQDVEALQEQQRQAEELKLAEEEKRRLHLERRKKEIEEEKRLIEELKQEQEETKLEAKRELETIREKITQQQDEEKRKLDAEMDRLALLKEQHDLNVASKEQEIQKMKDELLSKWEEEKKEVEKQREQIEVLRKEIEEKEEAVKRASSPEMVKSNGSTPLATSDESSGTSLELNESSSSQLEAKSHVEILRNKMKQLDLELQRHRVVSKGEISAAKEAVRQVEQETLQGMRTLATGKTDIELAWKTLDTMQAKHKVIEEDLLLRINEIREKLEKAEDVEEADLLEKERVIMERRAARMKVEEARRQIEELESENRTLDLGESDFNKKKEILEGEAREEIRDIREERKILLELLSKHQVALSKASHMVTETKVKLENCLENERLTIQPQRERVELLVRNELGPLIEMEGNVERRCEDLDRDNRERKKNIYKQRRRIALLERQHNQALQQAEKETLNKDELEELENEREAEKSLIRKEKLRLLDMEKKHKEQQEIGELTIGEAVEELEKRKARVNAVLTQERSKLGQMESVHKETLDFTERELEERSGILQRVKEKVGKDKRTLAKLDARQQRVAAKAAEELFMMAEVLEKEMTAKGKFDELAKIKEHRKRLQDLDKQLKMAERKEKSSRLGVGGDDANQCVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXZ4</accession>
    <name>A0A6S7JXZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022313">
        <property type="protein sequence ID" value="CAB4036697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXZ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="162"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="20870" checksum="D0666F104D7AC81C" modified="2020-12-02" version="1" fragment="single">KKEEVLLPMNVDVRDEGSTHVQGTFHDPITSGAIVDKPGTKEMEGTIMDTQGGESLTTQSVPTVVEIQVAEKNENVAHEALENAHETSSIEHGGSSLEHEVSKLEPVAGNVGHEMEIGEHEVKNSQNEASSIEHEASKVDHAVGNVDHEMEVGGHEVKTSEHVLSSAENDVQQTKHEVVNDTHTSTPHETEQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZN4</accession>
    <name>A0A6S7JZN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Pre-mRNA-splicing factor CWC25 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A046994</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022992">
        <property type="protein sequence ID" value="CAB4037367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZN4"/>
    <dbReference type="OrthoDB" id="6020693at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008253">
        <property type="entry name" value="Marvel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050578">
        <property type="entry name" value="MARVEL-CKLF_proteins"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22776:SF49">
        <property type="entry name" value="MARVEL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22776">
        <property type="entry name" value="MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01284">
        <property type="entry name" value="MARVEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51225">
        <property type="entry name" value="MARVEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="176"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4037367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="22404" checksum="BE401D41C27F889E" modified="2020-12-02" version="1">MPHTSGSDYVKSWAGLFKIGEFFCLLIAFSCLADFADKSENNGSFKFFLFVAITAWLITMLLFVLFSSGAHDRISMNWTLAMLIYSAVYVFLLLISTSLVADKARQFRRGVRKYEVGHERYEFEDTCDYYSDSGSPCSNVEAATVFAFMALALFLADTVFYFMEYRSTAGPAADQGGFVQHDEAGTPKDYNRSDIEQIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2B5</accession>
    <name>A0A6S7K2B5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074379</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022335">
        <property type="protein sequence ID" value="CAB4036724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2B5"/>
    <dbReference type="OrthoDB" id="5984406at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12368" checksum="5082306BB0AFCC4E" modified="2020-12-02" version="1" fragment="single">LKYFQALCAVVTSHYCVAGGPNNESCKNNSTTPGISMHEFPKPATWSWIGRAQTGAVLYYIISYTLRDASFISAQQQTCEECNKHKQRYIRLNDKYRKAKGVQQKLKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K3L3</accession>
    <name>A0A6S7K3L3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcription factor E2F3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A027773</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the E2F/DP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021931">
        <property type="protein sequence ID" value="CAB4036350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K3L3"/>
    <dbReference type="OrthoDB" id="1743261at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090575">
        <property type="term" value="C:RNA polymerase II transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14660">
        <property type="entry name" value="E2F_DD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000008">
        <property type="entry name" value="E2F transcription factor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015633">
        <property type="entry name" value="E2F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037241">
        <property type="entry name" value="E2F-DP_heterodim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032198">
        <property type="entry name" value="E2F_CC-MB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003316">
        <property type="entry name" value="E2F_WHTH_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12081:SF107">
        <property type="entry name" value="E2E3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12081">
        <property type="entry name" value="TRANSCRIPTION FACTOR E2F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16421">
        <property type="entry name" value="E2F_CC-MB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02319">
        <property type="entry name" value="WHD_E2F_TDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01372">
        <property type="entry name" value="E2F_TDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144074">
        <property type="entry name" value="E2F-DP heterodimerization region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="88"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="290"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="103"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="301"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="314"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4036350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="397" mass="44572" checksum="7A54D15E64143BD3" modified="2020-12-02" version="1">MATVSNQTSQVFTVENRGIFNMKHGRNINDVQTTTSVQKLSVEKRDLFGNTPNVNNNTLDRTPDVAVFPRGSRPNILLPPQAKRRLNWESKAESSDPTFKPPTTKRKTRTKTKTCALKVKSPIEKTRYDTSLGLLTKKFVGLIRRSASGVLDLNEAAELLAVQKRRIYDITNVLEGIGLIQKKSKNNIQWRGCRSALLHVDDDDNHDVTPAISPTIVDLHTDVADLEAKENRLDELIATYIRNVNEFKDQTLIAINAPPKTRLEVPDPATESIQLSLKSTDGPIDVFLCPDENDQASPVKSESGSSSSDYVSTSEEEIGPDSENVDMFPVHGIQDVNFQETLGCNFERIPETDEETLIAFSPFREETDDYFYSLTEEEGLMDLYDMYDLKPSFPLDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQG9</accession>
    <name>A0A6S7KQG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078222</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037855">
        <property type="protein sequence ID" value="CAB4045154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQG9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="209"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="289"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="289"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="327"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="362"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="509" mass="58223" checksum="6FC68A5F18A5FF78" modified="2020-12-02" version="1">MIRDAHDLAIARNWNFRDAYVTTFNTATPKFHLNIGDKVLLHAPNLASSAVNAKLNKPWVGPFSVKKVFENNNVLITRDDNTKQQFRVHLDRIKIFRGTVGKEYGIQPQRPEQETQVKRLPPKPILPGQRITRGIAQKHGIIVENEKLPSRPKEYVAKSHPSHVATMGHQPRGHQAQVPLFKGRHPLAQNKQPFFTDCRRPSDIPDPFCYSDRTNGKTYGPRQFPKRQQRTNGKRDPECILPFVQNNQDDGFPQNKTTTILGNHPRCSSSNRHGYIQYHQHGNNICQRKLSLTTRRSNATVPTTYGRNHRRTEPAHQTVGNTHHSTRQRDRGGEKTRPSAGQSLRSKGCSGQDGGTPKPRQQPATGNQATQIPFPPHTEQRSVRPTGEISKQSRRKRTTADFFHAGVHHANAYELHPGGQHNFNRSTYSSNPQVNFFQTRYVQGPGQPSQYQRYNMEIPEQELPGYGYTQNKHIRSDGRRQETMQNHPPQHHLQKTHNHKWRIVPITNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KTC3</accession>
    <name>A0A6S7KTC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045335</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036004">
        <property type="protein sequence ID" value="CAB4044741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KTC3"/>
    <dbReference type="OrthoDB" id="5959797at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023779">
        <property type="entry name" value="Chromodomain_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00598">
        <property type="entry name" value="CHROMO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4044741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="26238" checksum="995B355B620B8641" modified="2020-12-02" version="1">MAARKRNVLDYQQLDSLSSVVLYDTPRKKRKVLPRKYSVERIISKRKIKGEYEYLIKWDGWPLTACSWEPSSHLDEELLRGYEIPPTPHPERLETACRQFYQAITTSLRSKSVAPTYIPMDLDLWRYIINGKGRESNHKGFSLYSVKDLARLRLPEHWWYTLDKYGHGEGRGIQQLKIKPVLSWTPKHQIFKDGKLTDAPQMPIEKLCIDILRRCCNTHNLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L8G0</accession>
    <name>A0A6S7L8G0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054163</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019908">
        <property type="protein sequence ID" value="CAB4034192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L8G0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7282" checksum="A701D134374E594B" modified="2020-12-02" version="1" fragment="single">LSYRIYNAYTNKKLCKANVPILDLFSLLDSQVHTGNKDRSRTNSTLESVERLLVDYFELTADK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LG27</accession>
    <name>A0A6S7LG27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017677">
        <property type="protein sequence ID" value="CAB4031499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LG27"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="330" mass="38547" checksum="24A9800AA2DDEFB6" modified="2020-12-02" version="1">MEQPITRRPLKREEIKRVGLTFHCPERVDRIERMCKNANYENIMLTLDYTIPVFDFILVFRHRIPKVNVKLGDGWIGKNAEIRSLRSDNGGEPYGILVILNISDLTPDIRRCWIKNLKNTENTILLGEVEDILCEEEGLSDEDLRTIRRQLNEMGKTLLKRPIKGEAVRMYFDRPAIMDSVKEMLSHANYKDIIFIVEDVLHHGHSLKIVRHRIKLGSGWMGKGYKINWIYGTWGLKGIDITIRMSKYTRRTSIGQCTVGTLKNRISLGDPITVIHGHGRCPWISMEHYMTREYDIEQLNVNDERNEVNRIGSEMQMEQETEEVPWNKID</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LIN1</accession>
    <name>A0A6S7LIN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PREDICTED: uncharacterized protein LOC107337214</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A068494</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022640">
        <property type="protein sequence ID" value="CAB4037012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LIN1"/>
    <dbReference type="OrthoDB" id="6107523at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000270">
        <property type="entry name" value="PB1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00564">
        <property type="entry name" value="PB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54277">
        <property type="entry name" value="CAD &amp; PB1 domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="396"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="507"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="280"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="108"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="513"/>
            <end position="526"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4037012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="561" mass="63978" checksum="7EDE2F070EFC35A5" modified="2020-12-02" version="1">MSVQIKILYGEDFSRCKIHSLFKSELSCLYLADFKRIVQNTVGGFMSGVDSQTTRIQYRDDEKTVVTMMDDSDLKDAIRCLTAVPNTDGIFRMCVRVHDEVTPIGKNRNASKTNTTTPMESGTENFTFDRFYNDPDNQNNCSETIRKRRLDFYKGKQIDKSEIFMSNTQPKTKRTHTANTSTIAKARPTCHELHEPETLINTPIQRYLAKTEQNIEEKDQRIQEVMMAELNVKSRIERAKSNNVGQGNLCRNCHMRLRHTARNCEFDKCTSVFQCGEDKLHTGEVNLKQMAQNVKKLKTEKEKLIEELENKKSAAENLKDNILNKLEDSLLNADPVSYNIGGVKNWSLLRKHVFVLRKYCQTTLHGRIPPKHEILTCLEAALTSKDCTGIDISLKQSKKKRENPARPTLERYGIQFPTRHRESHDSELEDSDEETYLATYDRVRSCSPDLKSNRARSCNQSWIDRIKPTNEQEENEQLRLALSASYAENECQHERGQYGIESTYYSRSTLPRSKPSSSCNSTASSSAGTVQESVNINEVTCTVNDAAAALLSLRNLDSDTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LPV2</accession>
    <name>A0A6S7LPV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine threonine- kinase endoribonuclease IRE1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026368">
        <property type="protein sequence ID" value="CAB4040152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LPV2"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990604">
        <property type="term" value="C:IRE1-TRAF2-ASK1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070059">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036498">
        <property type="term" value="P:IRE1-mediated unfolded protein response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045133">
        <property type="entry name" value="IRE1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954:SF28">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954">
        <property type="entry name" value="IRE1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="34154" checksum="D01C7F8B0A10D2C6" modified="2020-12-02" version="1" fragment="single">TDENLDLDTDEDSNKNLKTFGTSDQNEGPGEKRKLENLAVIREQGSNKKIKTENAMVIQDQVPVAVSGESWKWEETSIVHREKFIKLGEYRKTHPKDIKEVNGVHVCCSNEFLIGKGSDGTRVYVGLEKNGHERAVKRLPRDVCTGLAEQEKKVLKELNETKSNYVVNYWFLDEQSDRDYLFIILDLCEETLENFVANSSDDDLVKIAPDIIRQVLKGLADLHCEPMPILHRDLKPSNILRNVHDKWLLADFGISRILTEGASTLPTTDQRGTEDWRAVESNNMAADDGKLRFKKESDIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQ55</accession>
    <name>A0A6S7LQ55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Exonuclease 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A025539</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023164">
        <property type="protein sequence ID" value="CAB4037499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQ55"/>
    <dbReference type="OrthoDB" id="5972718at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017108">
        <property type="term" value="F:5'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09901">
        <property type="entry name" value="H3TH_FEN1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09857">
        <property type="entry name" value="PIN_EXO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1010:FF:000111">
        <property type="entry name" value="Exonuclease 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044752">
        <property type="entry name" value="PIN-like_EXO1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006086">
        <property type="entry name" value="XPG-I_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006084">
        <property type="entry name" value="XPG/Rad2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006085">
        <property type="entry name" value="XPG_DNA_repair_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081:SF65">
        <property type="entry name" value="DNA DAMAGE-INDUCIBLE PROTEIN DIN7-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081">
        <property type="entry name" value="FLAP ENDONUCLEASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00867">
        <property type="entry name" value="XPG_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00752">
        <property type="entry name" value="XPG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00853">
        <property type="entry name" value="XPGRADSUPER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00484">
        <property type="entry name" value="XPGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00485">
        <property type="entry name" value="XPGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6 11" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="83"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="83"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="102"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4037499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33582" checksum="2346C906D4BAF8F8" modified="2020-12-02" version="1">MGINCLLPFVKKYSTNVNINRFSGQTIAVDASCWIHKSLAISVSQTGTRERFSRIFNSHIQLLKDAGVIPLMVFDGLPLPAKEKENARRQSERRERMEKAQTKNISTTQRNKLASQGQEKTYHDVVECIKLCLCQRVKYVVSPYESDAQIAFLLKNGYADVAVTEDSDLLVYGCEKVIFKLGMNGHGEYFELNNILSGLNTTNTEFVHGCIAAGCDYLSNVRGVGIHRAFSFVKSGKLFEELKKKHSPANYEDLFQMALAVFQHQSVFNPTLLTVQPLNPWTEDPGDEVKHFCGLYPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRK2</accession>
    <name>A0A6S7LRK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025664">
        <property type="protein sequence ID" value="CAB4039629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRK2"/>
    <dbReference type="OrthoDB" id="10041188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="196" mass="22555" checksum="BCABF8E815EB1F9A" modified="2020-12-02" version="1" fragment="single">DASQFVYLSFTKGDLAMEKTVTEIWYSMLLSDATYKSLRTSLEELIRFTSAQNLHSETGGLITIDEMQFKQLQGVWKTWFGLRVQGTKWIQKQREKVIKADIQSLGARHSGYLNNVPVQHANALKKWIDDGVFKRTQPPTFAENPTLTGANVDERYAPYSYGIPAFHFPFTGWDYVQVKKFKRSSCLVTMYGDYIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LU86</accession>
    <name>A0A6S7LU86_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036596">
        <property type="protein sequence ID" value="CAB4044862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LU86"/>
    <dbReference type="OrthoDB" id="8065733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14850" checksum="D79CDECC107C42CD" modified="2020-12-02" version="1" fragment="single">MLHTNKFEHHKWNSNVEELEADSDADHEQSFAKQQLGQPTCQGESKLLGLPWNKREDTLSVNFPDKLASVTKRGILENLAQMYDPLGIVSPVTLEGKLIYREACNQKIAWDTPLPENIATMWKTWEGDLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D740</accession>
    <name>A0A7D9D740_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A001441</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MSOX/MTOX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000082">
        <property type="protein sequence ID" value="CAB3977974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D740"/>
    <dbReference type="OrthoDB" id="5046242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.9.10">
        <property type="entry name" value="D-Amino Acid Oxidase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045170">
        <property type="entry name" value="MTOX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10961:SF7">
        <property type="entry name" value="FAD DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10961">
        <property type="entry name" value="PEROXISOMAL SARCOSINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="6">
        <location>
            <begin position="5"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3977974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="470" mass="53110" checksum="0F9017D34ED67220" modified="2020-12-02" version="1">MEMYDVIIVGGGPMGLASAYECAVKEGKKVLVLERFSEFANVHSSSVGYSRQFRVSYSEKNLSDLALKTYVMWQNLKKEMNDDSLLQLTGCLWFGDASVESSEGNIDLAIQNLKALGEIEGKDYRVLEGKEAIMNSTEFAFISRAVVEIDNPKALFTVKGGTVNVPGLVYHYVEALKIPNVMLINNARVTKIDYSDEEYVEVKAVVDGNEETYRGNKIILTSGAYVNEVLCTLHPPVDFRINVIIYLWCSTYFAEKHKPLPSGTDPVTWPIWYFFGPKPKDGSTEAPKDHNDYYGFPCEPDRPQYLRVAPAYTSQKEFDFMLFPPEINKRPLDKNALKFTSNFVHKFMPDLDPSLKEKEESTCIAGFAQLNENVHEKDEGAGFVIDFLLPESKRIVVFTGGWAMKFVPMIGKILTDLAIRGKTEYQDLIEPMNIKRGVLVDEPDCPGNQLNPSKMNITQKAKSFFENFWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8H9</accession>
    <name>A0A7D9D8H9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064894</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000216">
        <property type="protein sequence ID" value="CAB3979638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8H9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="14947" checksum="6201E01793EA4C77" modified="2020-12-02" version="1">MGNLSGCSDRYIVYLGIYIKVHTSGSCLSIIPTAGSTVFLSNCEIKSNEALCSFILDQAKSLLLAKNINSTLICANNPYLEQIQRDINLWLLTNLYINLLLLTFDSHVIHRSRTGRATYIQHLIEIVNTLKGDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DCB6</accession>
    <name>A0A7D9DCB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box only 22-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078216</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000393">
        <property type="protein sequence ID" value="CAB3981469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DCB6"/>
    <dbReference type="OrthoDB" id="5952621at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032436">
        <property type="term" value="P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000209">
        <property type="term" value="P:protein polyubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013702">
        <property type="entry name" value="FIST_domain_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14939">
        <property type="entry name" value="F-BOX ONLY PROTEIN 22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14939:SF5">
        <property type="entry name" value="F-BOX ONLY PROTEIN 22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08495">
        <property type="entry name" value="FIST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FIST" evidence="1">
        <location>
            <begin position="124"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="384" mass="43905" checksum="7B3261A1A7ABD8D4" modified="2020-12-02" version="1">MNEEGENEWIRMEGTSSDLPSIIACIPELVYEVLNILPARVLYTCTQVNRLWYHVATSVLRKRVSCNTIFVQDRIIEHSDAREYCESLYSKPSVVFLFTYDDIWLTRRDKPRRRGLERQLVKSVRHLYDELPDECQLLGCTTEKLIYNLPESFPTGPVHKKRGHVAISFPEVSGVKYHTVHVRHLRHHSRDWSRLFRFTVNHPVKLAIILALPHSRDMIAHIASGVRETFGEGVTILGGVGHDRLFMDGTVRRTRALVLLISGSAFGVRAGFLNQPIALAEARTDFYEPARTMIRELEQENFRPSVALVFTSRFVHRGNSYFSSAHGIFRDNFPAILSGGFYSYGEFCMRDGEPGRTVQSCKEFMKYNSSVFCVCGYDKTAVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DET1</accession>
    <name>A0A7D9DET1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045117</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000689">
        <property type="protein sequence ID" value="CAB3984049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DET1"/>
    <dbReference type="OrthoDB" id="5980437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF467">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24732" checksum="EC707171F0291B36" modified="2020-12-02" version="1">MIGSLIYAMTCTRPDLSWIVSRLSQTLSNPRTGDLIAAKHVLRYLKGTVDYELCFKKSDADLQLTAYSDSDWASCLEDRRSTTGYCCTLTEGGPLISWKSRKQPTAAISTCEAEYVALANTAQECLYLTQLLNGMYKKVHQSMKVSVDNQGAIELSKNPVNRQRSKHIDIKYHFVREMYVKGMIDIVYCPTQDMVADILTKPPTKCKLDNFKSIVFGCGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DRC9</accession>
    <name>A0A7D9DRC9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Hexosyltransferase</fullName>
            <ecNumber evidence="10">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A084869</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Golgi apparatus membrane</location>
            <topology evidence="1 10">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the glycosyltransferase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020001917">
        <property type="protein sequence ID" value="CAB3991791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DRC9"/>
    <dbReference type="OrthoDB" id="1158011at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047220">
        <property type="term" value="F:galactosylxylosylprotein 3-beta-galactosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006024">
        <property type="term" value="P:glycosaminoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006493">
        <property type="term" value="P:protein O-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002659">
        <property type="entry name" value="Glyco_trans_31"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214:SF3">
        <property type="entry name" value="BETA-1,3-GALACTOSYLTRANSFERASE 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214">
        <property type="entry name" value="BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01762">
        <property type="entry name" value="Galactosyl_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="8 10" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3991791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="44800" checksum="BD9C1A5E3F28ACFB" modified="2020-12-02" version="1">MSYIKNNTRKNFYGRRISQISFWIIISFVILYILTKLRPFLLTPDQFRTTDTVTFEISKGDTTDKVSSKDNSTNENSLLFIAVLTHWRRWKRRAGIRETWMTQCTRDKARCLFFTDDVGAKENDKRLLESEISRNNDTILMPMTEDMSFAFAARLLWILQWAVNHSNFEYFLRIDDDHFLCIERLLHELPWRPKKALYWGFVHCKPKIVRIDEAWLILTRDLVSEILSKINTTLPCHPIGDQAVAMWMNNSTYNVTYFMDNTRIVHKTAGHDTKYYTKTVCEKFISLHGVFDVEMRKLWLVWHKLYRAKLSSMPRYKISPIRKFEKLCPYSKVFSTDGFYPEYRFESRLCRLNPTWSISKSVHPGREETGERYSSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E1B5</accession>
    <name>A0A7D9E1B5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079637</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003396">
        <property type="protein sequence ID" value="CAB3998599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E1B5"/>
    <dbReference type="OrthoDB" id="5980760at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="20983" checksum="BCFB1574E57022F8" modified="2020-12-02" version="1">MKDLSQRVAFLLALLSGQRCQTIGKLSIDNMTMEETKITFLIADKLKHSGPGVHQQPLVFMAYVADQKLCILTYLQEYLKRTSPVRGDNKQPLISFAETLYKPISTETISHWIKNFMTTAGVDTTQYKSPSTRAASTSHLASQQFDLKDILNAAGWSKEETFKRFYHFKDNNEFNFGSAIMNTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E270</accession>
    <name>A0A7D9E270_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018320</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002993">
        <property type="protein sequence ID" value="CAB3996986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E270"/>
    <dbReference type="OrthoDB" id="6692996at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="16932" checksum="B946A0E9E6DA0D2D" modified="2020-12-02" version="1">MAALRAGEEQLLFLADEEGDVEDDEMLGFFLYLTEGLNPIPHRNYSRFKLENYSNEECVLNFHFTKADVIHLANALRLSDRFVCKNGTVASTLEGLCMLLRRLAYPNRLTDMVQMFGWSKSELSMVINSAVDFVFNQHHSLLNNLNVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EE92</accession>
    <name>A0A7D9EE92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017777</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005995">
        <property type="protein sequence ID" value="CAB4008023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EE92"/>
    <dbReference type="OrthoDB" id="5984724at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="703"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="703" mass="81266" checksum="9E5BD3366D397821" modified="2020-12-02" version="1" fragment="single">RFGNNAIIGVNFEKRLAAWPKINPGDAGALQEFSDFLRQVQIASKHIVSLKVYNYPSQIQPLVEKLPSWYKSKWSERVMKFQKVNGKETFPSFEEFVNHVSHEAERANISQLSPITVSTPKKAGDTSRRRPPACSITALASSAYESGSHDPLPPEKHDPSKYLRLPTKPTMFCFYHERSSHSSKNCEKFQKLSFPKHDNNNNDDQAKTSCTKVCGENQAGRSCARIVLQVFHQDDPTVRVPTYAVLDDQSTDVFVTDALLEKINTSGPEISLEVNTIVEDISADKYDIATPEIARRWNHLREIAHHIHYLPDVEIGMLIGRNVPTAFQPLKIIYGKEDEPWVEKYKFGWTIIGRVCLDNNPRNKTTVNRVSVIEKEDRRETKLENHAHVVDSSRSKDMTSPKEIKEMMQLDYNELHYGRNVRGTEQTESAEDMRFNKILTKGIHKNAQGNWEMPLPFKADEISLPNNRKYCLTRLLTLKKKMQKDEKLRTDYVQFMENTINRKHASRVPNEELQVVELDPKDQEVRKEVTTVLTTQQVRRNFPKVLEADRFKHSSSFYRLKRSIVCIQRMIERKRSDKQYNWRMQEGPPTVRELEEAEKLILKSIQYKHFSVEVDDMQRLAGNEDMFQDRQSAKVRNSALKRTTSLHKLDPFLDGKGILRVGGRLKNATTPYEVKHSVLISKNDHVTNLLIRHHVAQKHQGYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EHH8</accession>
    <name>A0A7D9EHH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006158">
        <property type="protein sequence ID" value="CAB4008562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EHH8"/>
    <dbReference type="OrthoDB" id="5984798at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF4">
        <property type="entry name" value="PEPTIDASE S1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="288"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="626"/>
            <end position="657"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="154"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="626"/>
            <end position="650"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="939" mass="107768" checksum="92325EB39B0196AE" modified="2020-12-02" version="1">MSTKADSLVSELSDMDLDLELTPLGNDDISVHVNRRFKKQTDKGRAYQIERKKEHCKSIQKRITKIMKTIESSITDWDNVHEVQNDLEVFSQQLVEFQAAYEAWRDLLSGQQLVPVTDWYDEHFRIMNNCKVKIVDWIAVAKYKIEEQMDDKSSALKSSIESRRSAGSRHSSTSGRARERAKVAELRAKAALLEKKQALENESEKLRLQEELAIAQAREQAFIQNDIELKREATIDGMNEYLGDTRPMPKENLLHDQLTKNIPTPQFSSTNIPQPTPVSAFHSRRAHQTPVRLPQYSSHEWKPPPSEYRNRVTLDNDPLIYLLEKQNRLTEMLSEQHQQNFLPSLSLSSFKGDPTEYHLFIRTFGMRVERNVKSSGARMQYLQQYLDGEPKDLIKGCHYMEPDAGYVEAMKLLNEKYGDPYKVSNAYLKKVNDWPTLRPGDDNALEKLAIFLTQCLSAMESLSYLVTLDHPNNLQCLVKKLPFYQQERWRREVTKLREKSKNPAFKHFVNFVKTEAKIATDPIFSRQALDKIGQDDKSKFKRGSTSKFTSNATMMKEESPNSCIACNGFHDLDECKVYLKKSLSERRALIAKRGLCCACYGSGHRSRGCIQRRSCKTCSGRHPTGLHDENFRMKNKNSDEPSKDIDRTEDGNSDNQRKSCSYAAAHEVVCDSSNVKFSIESMPIVPVRLRSNDKEIITYAMLDSCSTGTFISEDAVKRLEVNGTDTKVMIRTMNGPKMHDTKVVNGLIVSDLDGANSITLPKVFSRDEIPGRKSEIPRQELCRKWKHLERVVEQVHPYMENVKIGLLIGTNCPQAIEPRDFVASNNGGPFAVLTFAGWTIVGPLYLSDNENEVDCHRIVVQEIGSDKPSEHHFMVEDSVKELVTPESLNKMFELEFNERHCQKEQYSQEDKRFMEKIQRDTEYVNGHYVIPLPFRDDDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EHT7</accession>
    <name>A0A7D9EHT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arachidonate 5-lipoxygenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023041</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006583">
        <property type="protein sequence ID" value="CAB4009821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EHT7"/>
    <dbReference type="OrthoDB" id="407298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.180.10">
        <property type="entry name" value="Catalase core domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020834">
        <property type="entry name" value="LipOase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01477">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00087">
        <property type="entry name" value="LIPOXYGENASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00308">
        <property type="entry name" value="LH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00081">
        <property type="entry name" value="LIPOXYGENASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="453" mass="52195" checksum="A1549036F13459ED" modified="2020-12-02" version="1" fragment="single">MGNGCTKLPADYEIQVKTGDVKGAGTDSNVYIILISESGIQSRAINLDCTWRDDFEKGNVDSFKVGGISRLGSIGKIVLWRDSSRLNDDWFVLWVKIRNLHALYENLDCFPVNRWIRHDRRMVITKYDCILPQFDDNQEQRALEILEKRRTYGLTRKKPGIPKQIAKFPKDEHFSNDYKWDIQSTKYRLFAQSKLTKLTTDSWESLEDLKNIYIGKFSVPEGTRYWEDDRNFGRQRLQGCNPNVIRLCTEIPPNFKVTSEMVKPFLEGRSLQEAIELNKIYIINYKGVLDVTGMENRKLAIPMALFYVNNQGDLLPIAIQLFQQPAEDNPVFLPNDPAYTWMLAKMYFNNADCSYHQSCTHLGFTHLIAETVCVGTHRQLSPSHPLFRLLAPHFLYILAINSLALNKLISPNGWIDNTMTCGANGIVEIVKKSWRNWRMDVQGWLPNDLASRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EMF7</accession>
    <name>A0A7D9EMF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044601</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007286">
        <property type="protein sequence ID" value="CAB4011846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EMF7"/>
    <dbReference type="OrthoDB" id="5987699at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954:SF3">
        <property type="entry name" value="PROTEIN CBG08539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954">
        <property type="entry name" value="RETROVIRAL PROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="274" mass="31153" checksum="926E039904EF6E84" modified="2020-12-02" version="1" fragment="single">MEDLVKKKRVRGGHRSSAKKLVAKIVERLQGESPDKDVLWLRQSQTNLKEKIKTIRQFDEQIIDIISASKEEDVDELVTQEIEDSDNAIAELERILLELEDELCKLRQSTPLSVSTTQNAADASLNQSHLSTSSDMSVGKIVRAKLPKLELRKFNGKICEWQEFWDSFSSSIDNNEQLSDVDKFAYLRGLLEEPAKSTIAGFSLTEANYKSAVELLKKRFDKKSAVQRAHVNELIQLSPVFKERDTRGLRHLYDSCEAHNRALKAQGVSEESYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ETW5</accession>
    <name>A0A7D9ETW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A076693</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008603">
        <property type="protein sequence ID" value="CAB4015152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ETW5"/>
    <dbReference type="OrthoDB" id="5964200at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041249">
        <property type="entry name" value="HEPN_DZIP3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46844">
        <property type="entry name" value="SLR5058 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46844:SF1">
        <property type="entry name" value="SLR5058 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18738">
        <property type="entry name" value="HEPN_DZIP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="DZIP3-like HEPN" evidence="2">
        <location>
            <begin position="35"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="3">
        <location>
            <begin position="245"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4015152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="33838" checksum="FFE5E1F29B000FB4" modified="2020-12-02" version="1">MDPVEAKANFFRVCQLLIDKGGDALRAALHVKHLPSTLAADLNSHKKTLQRIRHTVIKPPQWQLLFPASGVPNSNDFDITLLTILLRNICGLPSPAAGWNAMPPASDTSISANILRIKLYRNDVYGHISSAQYDNVKFETLWQDISKPLVKLGIPQQDIDELKEAPLSSEEESYIDKLKEWKEEEDDLLEKLKDVETKVDNVEEKIAKLQKTVETETLNLSNVNQLAKFDFTGKIDGLCKKFQDGTRDWFFEKLSSWFSDEESRVMILTAGPGVGKSVLSAKACELYKQRGELASYHFCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCR0</accession>
    <name>A0A7D9HCR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A002601</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000203">
        <property type="protein sequence ID" value="CAB3979487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="68076at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014840">
        <property type="entry name" value="HRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026947">
        <property type="entry name" value="UBN_middle_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21669">
        <property type="entry name" value="CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21669:SF28">
        <property type="entry name" value="YEMANUCLEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08729">
        <property type="entry name" value="HUN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14075">
        <property type="entry name" value="UBN_AB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="190"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="309"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="496"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="599"/>
            <end position="683"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="813"/>
            <end position="862"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="928"/>
            <end position="966"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1006"/>
            <end position="1049"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1087"/>
            <end position="1108"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1124"/>
            <end position="1180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1186"/>
            <end position="1205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1350"/>
            <end position="1371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="192"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="203"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="215"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="263"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="310"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="330"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="504"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="613"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="645"/>
            <end position="666"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="835"/>
            <end position="857"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="935"/>
            <end position="955"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="1007"/>
            <end position="1019"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1031"/>
            <end position="1049"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1131"/>
            <end position="1147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1156"/>
            <end position="1169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1186"/>
            <end position="1195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1350"/>
            <end position="1361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1371" mass="152476" checksum="3527258E45895D52" modified="2020-12-02" version="1">MQKVQIGLRSQQKFYRNVNGAEKPVYEQFRNAAIFPNIMEAENKSKTESSKNFAQKEKIKERVSVRFNLQLTDSTDRSFPEFSYLELLGTNKNKKKDDDILHDGECNVDEIRALAKKFEDKYGPKSAAKKSKGHKIDRVQDLVDVTYGYDVTDSFVDDTEAYDELVPADWTTEHGGFYINMGDLNFRPLSSGDEKSDGDFKEPKKKKTPKKKNKENKEKKLKDGKRCLSSTEKEKSSKKMRLNSDEKESKLQKLKKRMNIDAGKLDKSKETTSDTVTQRNKPTKTLSIENITLQSPVIKLEKNSITELRNSVSSNNPTSTPVENSSIGTENENSLSNSLSVTLPDGLPPSLILSIQKLIEAARKAGGEAGKCKFFNSDVNRILLQIETDSRKLNCRARSAVYDYLALFLPCTKDTLLKRAKNLFMQEQVGRLREPLLKLRLAIEAAMPAQVKHYEEEVAKLSEEQALQSQKLCIDTANQNGEKKDDVVMKDLEVDGENDKNEESTTPTDVNAPTTPSEDKGKRAILPKRFVWKDDIRNLLCDVVGIKVELYLMSKSRSTTAEEALKGFLETEVRPLWPKGWMTTRILYRESKQAHAKVTSTIGVAKAKKDAKRPKEEEGKGQDSNHQQVTAMAIDQKNSEGVKPTNISTSSVSATNDVTKSTTVTKTPDAVRPQALNIPTDKQTIQLKPSIQTKTEADVPVKSSVEVKSQVKSQDEPRVINPLQSSQLVGQSQMKLQNATQMKLQGPTQLKSQALTQIKPQDQTLRSESQVRAQEITPSEPIVRTALQGTLQCKGVEKPRISAQGSVLLATQSKPQAELSEQKDRNSPDQLNLKHPSQSQGQSIHGQTPSQSLSSSHPQDHSLLKPQSAAFQNQIKDRVKPRPEEDESTLRKLLGLTEVQSKDQSHIQLQGHVQNQTLVQKVNAQLQGQPALHGQRSTVQNSQNKPHVQSHVQPITQQTGQGKGRGQILTHAHNQTQVQLKTSAYRQNQLESQNRIQNQLQTLTHAQGQVRGQGQLQGQFHTPPREDQGHPLSQVQSKSPSSPRVAVHTNSPQRILQAAFNSQTNMNKPKATGKTILDFLDEVNPSRNTQAFHSPENRPLSHATSVSSPLPSCSFQNVSQEHQISPPRNIKTPNSMAVSSPPLSSPNRHPIRNVSPIRQMSNNTGTFGNISPPKRLSSCSLQNIPSKLNQETPASPRSPRQGYNYMNKVPSSPNLSCQFPMQPTRSSPESHQRTSHLNTLASTFMALSSSDKPNTQLTATSLLNSLANMSQNHMSPNLPLIGQSSNPLQNNGVSIMSSNPLTIPSMMNMQSVPNNKPQPGSGFPGNMKNFAGMPRPQFPNQQSMLRNNLPTELNDGNNRIPNFQPAYRPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HI09</accession>
    <name>A0A7D9HI09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc finger FYVE domain-containing 26 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A001844</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000808">
        <property type="protein sequence ID" value="CAB3984965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HI09"/>
    <dbReference type="OrthoDB" id="1936617at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005813">
        <property type="term" value="C:centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030496">
        <property type="term" value="C:midbody"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032266">
        <property type="term" value="F:phosphatidylinositol-3-phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000281">
        <property type="term" value="P:mitotic cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032465">
        <property type="term" value="P:regulation of cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028730">
        <property type="entry name" value="ZFYVE26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000306">
        <property type="entry name" value="Znf_FYVE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017455">
        <property type="entry name" value="Znf_FYVE-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46591">
        <property type="entry name" value="ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46591:SF1">
        <property type="entry name" value="ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01363">
        <property type="entry name" value="FYVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00064">
        <property type="entry name" value="FYVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50178">
        <property type="entry name" value="ZF_FYVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="645"/>
            <end position="700"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="645"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="672"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1043"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3984965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1043" mass="120067" checksum="1B4E93E14FEA03A4" modified="2020-12-02" version="1" fragment="single">MQALKQENFHTQLDNAISDYLSRNSEIIEEEKIYLPELLKWYKNDFLSTLSDLSAETNNFNGGENWVELLLGISPYLRGEHFKNFDDIATQLNVAFTPHCWEFGFRFPTTETTIQRETSSKSDIPNAPKYTLTQALSSYLIARSPLVASLANLSCSQDSNLAPQGSQKEAEFSLLTTSLANPGTRSLEVTSPFEFAMNQAVKFPVLQRHITSAFLSVSKFLYLDGLGLTKSPQSTSVSAELATRNQSRLFLLDEQSQEVSEMFLRAVNYAWCKADWELLLEIFNSACLNQHGALHGPEDFVLEMAFMSRLETSPDDDLAAQSFSILHNFNIPAPNFNLNWRSKKWLLLYRIKDDCARAKIVLQCLHNWCDIEVCLKLLTFCLSKPPDDKELLASLEKKTKQLRLCKKIRHCHSSQGFSGIKIKYETWKDVVEHSVRNPELVLQALQDRERFDLVREWIDVYGYPSQLRERIHEDYLRYLLTKTPMDVTEVYMYLEEIEDPVKTLEICERLLSKQMPIPNTLFIIHFMITDLDAHVKPARKHALLRQRLGTNAVLCIPESNRRPYESLTSQPLLLLEQLLIDMKVEWAGKVFEDLQSELRTNRNYDEWLRKEISVEAFDELLVWYATKALEFDVVTYEDHDELVHESHNDKTKSLDTRQIKTTTPIKGHQRHASTGATRSFRRSSTNESQQSGSFKIPEKIPAEGDWEPDYKHSVCMICKEVAFNMFVRRHHCRRCGRVVCDTCSPFKRILSNSSRTPVRVCKDCDKAMFEQSYRKKEADTIIYSGSLPTYMSRSWEGRASAEFRERLDPAVPKSEDELNFDVHQGWRLNFDEECNKVIRDDFLYEQAPSSSLCTSILALHGNSKTCAKLLLELCNKLSQKLGMSEEIDNNLLISIICQLLYHAKLKFTNCGETHGVELCDTYMSRVELVKFLIESNFYELPSIEDLMSSQTARRLRDKLIENESLTLAMEVTTKCGLDAGAVWGAWGLAYLQVGKFKEARQKFSKFLKPSERGKTTQGNIRYVKMIIDILETSPMVSFDYLTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNI6</accession>
    <name>A0A7D9HNI6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001128">
        <property type="protein sequence ID" value="CAB3987158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNI6"/>
    <dbReference type="OrthoDB" id="5988102at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="159"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="22006" checksum="F08D746D84053331" modified="2020-12-02" version="1">MLAQDGKSGSRDSNGYYADLTSQLIKEKTALLLHYAGPDVDDIYDTLPSTSSNEDYKTVVEKFNQYFSPQTNVAFEVFNFRQAKQKPDESLDSYHTRLRHLSQTCEFSDLAKEIKDYIILTCTSNSLRRRALRDNLDLPNLMKTGRAIELSQKQASQVEQQEFSSVNSVRRGNIQQPNTEATAPQDRVLRTND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-10-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQP2</accession>
    <name>A0A7D9HQP2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CATSPERE first N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053769</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001191">
        <property type="protein sequence ID" value="CAB3987545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQP2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053818">
        <property type="entry name" value="CATSPERE_NTD1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22841">
        <property type="entry name" value="CATSPERE_NTD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CATSPERE first N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12128" checksum="42483546198A1504" modified="2020-12-02" version="1" fragment="single">MWRYYPAANNDHGYITTKTKFILEYTGSAEWSSNSWYSEEHCHVEDRTSPSATVICSTSGYHPFGILDQTLTKLVTTVFNYVYRESIEPYDEIIFVTVLLPTSQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUB0</accession>
    <name>A0A7D9HUB0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028507</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001981">
        <property type="protein sequence ID" value="CAB3992111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUB0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="73" mass="8234" checksum="728174626D6E0C5B" modified="2020-12-02" version="1" fragment="single">VVTICRRSVKLIVNICKMIFRRITTENIINQDASLAVEITKTPSNLTMGGVKDMVLMDYVVAVDEKYTLMNVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUQ9</accession>
    <name>A0A7D9HUQ9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A081872</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002040">
        <property type="protein sequence ID" value="CAB3992394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUQ9"/>
    <dbReference type="OrthoDB" id="534912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097272">
        <property type="term" value="P:ammonium homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.3430.10:FF:000008">
        <property type="entry name" value="Ammonium transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="entry name" value="Ammonium transporter AmtB like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11730">
        <property type="entry name" value="AMMONIUM TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11730:SF58">
        <property type="entry name" value="AMMONIUM TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111352">
        <property type="entry name" value="Ammonium transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="163"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="207"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="270"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="298"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="327"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="366"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3992394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="520" mass="56742" checksum="F2D87B2AB1B5394B" modified="2020-12-02" version="1">MNSTINATDHGDFRPDDATWILTSAFIIFTMQSGFGLLEAGIVSRKNETNIMVKNAIDIIYGGLAYWIFGFAISFGNSDLNNRFTGWGNFFVDSEDDDFGIFAKYFFQLSFATTATTIVSGAMAERVNINAYIAFSFVNTLSYAFPAHWMWDDRGFLKEMGAVDVAGCGPVHLVGGVAAIVAAIMLKPRKNKFDEHGKPREMAMASPTNVLLGTFMLWWGWLGFNCGSTFGISGIKWKLASRSAVVTINGSVGGGIFGMAYSYIFHKKKLLIKIFVTSILGGLVGVTAICAVCRPLEALFIGFIGAAVAIGGMVMEDRLCIDDPVGAFPTHALASVWGLIATGLFCEKTPQFSEHAGLFKGGTWKFLGIQVLSIVCVTLWAAFTTFLQLFIIDKIFGLRMTDAEEEVGADYYVHNICIEETGSITLTENNSSEETQGIPSVQVDDRCGSTQENSAPKYPQVDMKNLREINSRHLHLSGKRKIINGNGIVNSNEISLRVGPYLEQQMVLPKGTSNCGYHSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2T7</accession>
    <name>A0A7D9I2T7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036404</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003013">
        <property type="protein sequence ID" value="CAB3997062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2T7"/>
    <dbReference type="OrthoDB" id="29546at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005547">
        <property type="term" value="F:phosphatidylinositol-3,4,5-trisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052227">
        <property type="entry name" value="Arf-Rho-GAP_ANK-PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45899">
        <property type="entry name" value="RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45899:SF2">
        <property type="entry name" value="RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19714" checksum="FE592CA692CB357D" modified="2020-12-02" version="1">MNSTPFPYARHIDFDDCFYNIYCFSVFTDVIQVWAQILMSAIIQVRKEDETNVTQDPGGDMFEPDKKGYLKKQGNNVVIDWKKRYVAVKDGMLAYYHNSEDFIVASPINTIQMNIASVRVDPKSPTRFQLVTPHRTYLFQCEDEEELHSWIAALEKAIQMALSDRTVMSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I740</accession>
    <name>A0A7D9I740_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017403</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003568">
        <property type="protein sequence ID" value="CAB3999348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I740"/>
    <dbReference type="OrthoDB" id="6496131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="51" mass="6180" checksum="D8FA9FC5D7F3284E" modified="2020-12-02" version="1">MATYGRIEEYDETEEWPQYIERMDHYFEANKMDDDDKKRSIFLSVIGAKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7F3</accession>
    <name>A0A7D9I7F3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A009054</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004438">
        <property type="protein sequence ID" value="CAB4002753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7F3"/>
    <dbReference type="OrthoDB" id="5989141at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="103"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="12"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="25"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4002753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17969" checksum="6FF62A8849BACE82" modified="2020-12-02" version="1" fragment="single">MSVAKNKRSAKELNNSVLSSPTKPSTKEQKKEVDDEVVEKKWDLESLFKLVESLNKKLDKLESIEAHLKHVDHDITELKHSLSYMHDTTEELKLKQTSYDDILLKNEEKIGSLEKLASTLKEELIDLRARSMRSNLMFYNLPENDEENPEKVVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I985</accession>
    <name>A0A7D9I985_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A027087</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003787">
        <property type="protein sequence ID" value="CAB4000239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I985"/>
    <dbReference type="OrthoDB" id="5989161at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4000239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="386" mass="44785" checksum="E9EDDCD5205DAA48" modified="2020-12-02" version="1">MATRGFRRYPLLFFSTLEECLEFEFTTSTIEKMLPIVSKFIPSTERLPAVRIREYAECIVPSYSDVSFRSHFRLTRRSAEILVGLLARCPEVPSQHLRGRPPVSVEKQLLITLWVLGNPEVIRSVSDRFNVTKSSVFRIVRRICRAIVNNLAAQFICWPKGDRVKKVMEQFQRKQGLPHCIGVIDGTHIPIKAPYDNQEQYVNRKKFHSLQLQGVCDPDRFFTDVYCAYPGSVHDARVLRNSPLYQDAEHLESEMFPGSAYVIGDAAYPLKTWLMTGFKNNGKLTREQRHFNYRLSSTRMKIEHTFGLLKGRFRKLKVMMDVDKVEDIPLLVTSACVLHNFCLMNEDNVEMFLDLDHEQEVNNFQNIFVEQEIAVNKRAEIMELIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9X5</accession>
    <name>A0A7D9I9X5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">HEG-like 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A078381</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003772">
        <property type="protein sequence ID" value="CAB4000180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9X5"/>
    <dbReference type="OrthoDB" id="5956155at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4000180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="470" mass="52574" checksum="6E96E358D382457B" modified="2020-12-02" version="1" fragment="single">VDWDLTEFDDTADLINNDEAFAIELQRQLQGESSSQNSFQTSVTHNLLDQTVSITNDTSDSNQLEGTSGISIPHDYSTITDVVQALEKSVNKEKQFFITVRRRTPLPRVLNLWRYEAKKQGVHHELRIKFLEEDGIDSGALTREFFTDVVPAIGDMLFPNGTPVDSTHHVQNGNFRTSGEIVASSLANGGPPPCLMDEKAFQSLIQPEMNALDMDSEDCMTATEKQVIDSVKININLHRDSVLEHGYTGPVDEKHIDDIVRSMKVSLVNKRLLYLREFKEGLSLFGLSTILDDYPQVCEPLFVQNRLENVVATYLFSLMQPVFSPVGSSRRQLEETLMDNFQVLLMALDGGEISGYTTPPVWNDSENQGEEVAAADAESTEETSADMSSAGVMKWLTGQKHRQLNGEKIKIQAKFDHECLIRNPAHSLCFPLVGACGRVITFPVSHMKNYQTFKNVFLLGFCNGQDFAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAZ1</accession>
    <name>A0A7D9IAZ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A072768</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004941">
        <property type="protein sequence ID" value="CAB4004579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAZ1"/>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF31">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 6-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="36"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="161"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="275"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="423"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="556"/>
            <end position="678"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="423"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="454"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="574"/>
            <end position="635"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="642"/>
            <end position="670"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="678" mass="78392" checksum="0E3E3C99B43159E1" modified="2020-12-02" version="1">MFLTLRTRFLTLTTRFLTLRTRFLTLRTKVPHTEDKVALPENKVSHSEDKVHHSEDKVPHADDKVPHSENKVTRSEDKVPHSEEKVPHSGDKVPHSEASFITLRTRFLTLRTRFLTLRTRFLTLRTRLLILRARFLSLRTRFLTLRTRFLTLRTKVPHPEDKVALPENKVSHSEDKVHHSEDKVPHADDKVPHSENKVTRSEDKVPHSEEKVPHSGDKVPHSEASFITLRTRFLTLRTRFLTLRTRFLTLRTRFLTLRTRFLTLRTKVPHPEDKVALPENKVSHSEDKVHHSEDKVPHADDKVPHSENKVTRSEDKVPHSEEKVPHSGDKVPHSEASFITLRTRFLTLRTRFLTLRTRFLTLRTSQVPHTEDKVPHSEYKVPHSEGRFLTVKAMFLTLTTRFLTLRTRFLTLRTKVPHTEDKVALSENKVSHSEDRVRHSEDKVPHTDNNVPHSENKNKAPHSEDKVPHSEGKVAHSDDNVPDSEDKVPHSEGKFRPSDDEVSLSEDKVPHTENKVSHSENKVTHCEDKVPHSEERFLTLRTRFLTLRTRFLTPKSGSSLRRQVPHCKSNVSHSDYKVPHTDDKVSHSENKVTRSEDKVPHSEEKVPHSGDKVPRSEGKFHHSEDKVPYTEDKVPHSQNKVPHSEDKVTHSEGKVPQSEDKVPHSEDKVLTLKSGTSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJ52</accession>
    <name>A0A7D9IJ52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006025">
        <property type="protein sequence ID" value="CAB4008118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJ52"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="72" mass="7946" checksum="87D350CC17336C35" modified="2020-12-02" version="1" fragment="single">ALSNIVATAMLGDVGKAERALTIAGLRDKHIIFTLKDLNSPLELNLATSPLDLTRRHCLCQYNVLPKNNPEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQG9</accession>
    <name>A0A7D9IQG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009090">
        <property type="protein sequence ID" value="CAB4016369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQG9"/>
    <dbReference type="OrthoDB" id="1302433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="14861" checksum="1B5F862887B2F61C" modified="2020-12-02" version="1">MECSLAIDVLDWFLCLRKWFLPLKWFLPQCKYPTDTEILFGFDPARRIPLVYSALLGIVRHLRFDRTDPDLDIVIGKYRPFMAVFWHGGEDRTLCWSAFWVATPWVAGSQGLGSIAPSESFSPLSFNSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IW87</accession>
    <name>A0A7D9IW87_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062918</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008493">
        <property type="protein sequence ID" value="CAB4014896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IW87"/>
    <dbReference type="OrthoDB" id="10041188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027974">
        <property type="entry name" value="DUF4470"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024119">
        <property type="entry name" value="TF_DEAF-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10237">
        <property type="entry name" value="DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG SUPPRESSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10237:SF14">
        <property type="entry name" value="MYND-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14737">
        <property type="entry name" value="DUF4470"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="547" mass="63374" checksum="A0FE786D9E7DCE98" modified="2020-12-02" version="1">MPRFSECWRCGNTVGVGIICELCGVAKYCSERCQRNDIFRHEAECISASILKTCTTCRKSGPNLKACTGCYRAFYCDTNCQRSNWERHKIDCEDVKEVIKILAQRILTHFSSSGQTVSSSGYFYWGNVPALDCLNLVENEGDDYSSGLKVLYFGVGDLRNVALTCASLPDSYSNKVLFTLNDKESCVLARLVLLLYMLIKGDFGVESKVTEIWYSILLTEPTYKYLRTTIEELVNFRNAEILKTTTAGLISIEEKQFRKLRDVWENWLHLFVEGTDWIQKQRIEKFQNYPIYHEMILHCLEHEHVASAMKWIKDGIFRRTQSPAIIENPTLTGYEMNNGGSPYSYCIQATVFPFCGWDYLRVKKFKNSNCLVCMFGEYIESVLRSFMKKLSKRQIRFQIVLSDCMDIKQHLEVEVVYDRILTSNLMDYIFLVDLLKLCSELLNQENTRATIVTQTMTWDRIYWPGKGLRPNYLPKAFGKWMKIALEDIKRSSSNVTDSACLNSLEYVDESCEFDDYLRSQFYADGLRQEIENEPKGQNIITFLPRKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZL0</accession>
    <name>A0A7D9IZL0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A084353</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009350">
        <property type="protein sequence ID" value="CAB4016988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZL0"/>
    <dbReference type="OrthoDB" id="1909920at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="31"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="23113" checksum="DB6BF0F03BDB691C" modified="2020-12-02" version="1">MATCCAKFIPSFSHLSEPLRKLTVKSAQFRWTKCEQTAFDNIKNALTSDTVMAYFDQTKPTELITDASPWGLSAILAQNSTQHDDRRIMAYVSRSLSEEIQEATTHDKTFQWLTEIIREQAWGSIKDLPTTGEDVSELKLFVKKVLQQEIQHNSEDASDEEDYSKLSNNLPDTNIEVNNELAERRYPARDRNNKQGYIYIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J050</accession>
    <name>A0A7D9J050_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009902</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009564">
        <property type="protein sequence ID" value="CAB4017479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J050"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26334" checksum="FD87E457294B3F7A" modified="2020-12-02" version="1">MATAFLGDSYITRNIVGFMTSFFGDSIGGIFSVELFDGTIDKLSKTSLLQKISILTNIFKIMQLVDGGKVYPVVQTIIDSGKGDLFTDKTKFEEVFTFNGFSSILNLIFVKDIPKGIEYFVNNCKEHRDSIKNFHIFRERVFNPSLKELIRVFIVFVLSVCNKDGFKILSRASYEKDLNGEERDALENLFFSINSLHTQLCTVNTEMSEDTKALAKKLKQLSTKDGLVQLISD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JJ34</accession>
    <name>A0A7D9JJ34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017137">
        <property type="protein sequence ID" value="CAB4030785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JJ34"/>
    <dbReference type="OrthoDB" id="10042902at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019169">
        <property type="entry name" value="Transmembrane_26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22168">
        <property type="entry name" value="TMEM26 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22168:SF3">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09772">
        <property type="entry name" value="Tmem26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16084" checksum="FE8B0694CD77C773" modified="2020-12-02" version="1" fragment="single">MEIDLYHERYNERELQMMQVASSNSSLVNTDEDKDMWANLSKATIAEKVGALGLTIGIIIGRWLLPRGAITRDQLSALLIGYVGIAADILEVFELFEEENLMYRQSITIATLFVFSWCLLSFCLVTTATTSSDKDGPKQRTNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JJ60</accession>
    <name>A0A7D9JJ60_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Protein Wnt</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A052918</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Ligand for members of the frizzled family of seven transmembrane receptors.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Secreted</location>
            <location evidence="1 10">Extracellular space</location>
            <location evidence="1 10">Extracellular matrix</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the Wnt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017020">
        <property type="protein sequence ID" value="CAB4030637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JJ60"/>
    <dbReference type="OrthoDB" id="5945655at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005125">
        <property type="term" value="F:cytokine activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005109">
        <property type="term" value="F:frizzled binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060070">
        <property type="term" value="P:canonical Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045165">
        <property type="term" value="P:cell fate commitment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005817">
        <property type="entry name" value="Wnt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12027:SF101">
        <property type="entry name" value="PROTEIN WNT-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12027">
        <property type="entry name" value="WNT RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00110">
        <property type="entry name" value="wnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0272">Extracellular matrix</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0964">Secreted</keyword>
    <keyword evidence="6 10" id="KW-0879">Wnt signaling pathway</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4030637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12816" checksum="5F97211483E64258" modified="2020-12-02" version="1" fragment="single">MVLLNFRSVEMKRSIVQDGQNGTMFAVQHSLFCDIYRDLSPRQHNICRNNLLLMESVIEGARLARQECIKQFNNERWDCSSISGKSTALGLMTKYATKEAAFNYALVTAGIVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JLE9</accession>
    <name>A0A7D9JLE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase PDZRN3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A029480</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017684">
        <property type="protein sequence ID" value="CAB4031509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JLE9"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013010">
        <property type="entry name" value="Znf_SIAH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632:SF3">
        <property type="entry name" value="KELCH-LIKE PROTEIN 32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00504">
        <property type="entry name" value="Ubox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51081">
        <property type="entry name" value="ZF_SIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4031509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="528" mass="58526" checksum="12052FE7A92C1A5E" modified="2020-12-02" version="1">MACCGGGYPEDRFQTSVDKNFFCPICTDVLKDPVQCHNQHLFCRACITEHLKNSQTCPVCMQELTEEALSKPARIVTGYLDGLMISCEHKERGCVELVELGLLETHISVCEYKPVTCPNERCEVVVNMADLEEHTSEVCEYRQVFCEECGENMSFKKYGKHGCLISKDVQAMKGELFQVQHQVKEMFNTQKEMLKAIQNLATTVKKIGTGKVEAAPSLVTKSQGFIVVIGGDNGTSTILSSHGCLDSVEMYSLVNQTWRKLTPMQQKRASPTAHFYNGRVMVTGGRCGARSATRSIEQIQIPGKDIPVRASLDALNLPAELPFKFHGHKTTILNDHMWLVGGCVSNACSKAIYMKSVRSSGTFQVRCEMTKPLSYHALEVVDNEILIIGGSTNGGADGIVKTVLSYNTATNALREVHSLPFPMADMATVKHGDDVIIIGGLNKDREYLNTVFKYNHKKRVCKQLPGMKHKRDECAAVLSGKKVFVMGGYNKEEGCLSSVECFDLERQIWHELPSMSEAKFKIAAVLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JNQ8</accession>
    <name>A0A7D9JNQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055236</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018383">
        <property type="protein sequence ID" value="CAB4032412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JNQ8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="22911" checksum="2636B50524D107E1" modified="2020-12-02" version="1">MLTNAATWPPPKNEIKSINSGKVYLHVTTIDRWGNVDQASQVKRVPGMVNALGRGFYTYPQSAIIPDRLSVLIQWAHIDAEDEEEMRSELKKVRIVAVYPNRDVPVWIPQGTLTLPPGSNLDKLLTNLSNDRKLNFLAISLPGNSQETVWLKTKVEQGIVHYPMEDSLPMDFLVIDSVRGMTDAEIKKYILDVWGNSKNKKTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JT26</accession>
    <name>A0A7D9JT26_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ubiquitin-conjugating enzyme E2-22 kDa</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A089210</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the ubiquitin-conjugating enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021566">
        <property type="protein sequence ID" value="CAB4035966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JT26"/>
    <dbReference type="OrthoDB" id="9993688at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.110.10">
        <property type="entry name" value="Ubiquitin Conjugating Enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000608">
        <property type="entry name" value="UBC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023313">
        <property type="entry name" value="UBQ-conjugating_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24068">
        <property type="entry name" value="UBIQUITIN-CONJUGATING ENZYME E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00179">
        <property type="entry name" value="UQ_con"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00212">
        <property type="entry name" value="UBCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00183">
        <property type="entry name" value="UBC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50127">
        <property type="entry name" value="UBC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="2 3" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="UBC core" evidence="4">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4035966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10175" checksum="830E1E3AF25441D7" modified="2020-12-02" version="1" fragment="single">GLKCSISVQLVGDSFSKLRGELAGPPDTPYEGGRYVVDISVPETYPFNPPKVKFLTRIWHPNISSVTGAICLDVLKDQWAAAMTLRTVLLSIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JUJ8</accession>
    <name>A0A7D9JUJ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050127</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022276">
        <property type="protein sequence ID" value="CAB4036666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JUJ8"/>
    <dbReference type="OrthoDB" id="5983221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14380" checksum="32E10F456C339E42" modified="2020-12-02" version="1">MFLVVVDAYSKYVDIVPMSNATSTTTITALRHIFSNFGLPEHIVSDNGSQFTSEEFQKFLNDNNIQHTTTAPGHPATNGLAERYVGNFKDKLKKMVDSGEPLQTKLDQFLLTYRATPAGLGKSPSELLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JVG3</accession>
    <name>A0A7D9JVG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A029427</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022255">
        <property type="protein sequence ID" value="CAB4036647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JVG3"/>
    <dbReference type="OrthoDB" id="5989761at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013010">
        <property type="entry name" value="Znf_SIAH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51081">
        <property type="entry name" value="ZF_SIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4036647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18873" checksum="A93569EF0B9240D2" modified="2020-12-02" version="1">MACCPTEKEYGYEDSRFEKDVDENFHCSICYNVLKEPRMCRNNEHVFCLSCISEHLKVNSQTCPECNEHLSVDTLRRPRVLNNMLSKLRINCDYASRGCPEFTCVEGLETHVANCEFAPVFCSNENCGMEINKQDQVHHETEVCGYRKVKCHDCGHTGKLWEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KEV1</accession>
    <name>A0A7D9KEV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000948</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032071">
        <property type="protein sequence ID" value="CAB4043314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KEV1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12800" checksum="39A4F9FC20894ABC" modified="2020-12-02" version="1">MTTAVSKGTRPQVRKTVDISGTERRRFPGYKGKSDSTFLRRLALENARMEREKAEMMVGLHDTNLEPEPDWNTASDDCDDHDDYDDYDDYDDYDEVFENEVSYRKPHIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KG28</accession>
    <name>A0A7D9KG28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ubiquitin domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036618">
        <property type="protein sequence ID" value="CAB4044865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KG28"/>
    <dbReference type="OrthoDB" id="5970450at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36649">
        <property type="entry name" value="UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36649:SF28">
        <property type="entry name" value="UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="21974" checksum="03949E961F1F6DCA" modified="2020-12-02" version="1" fragment="single">QGVKPGTTLLMVKTGYTATEPVQTSYIGDDDLDQLYNYNFTNVLDSDLQFVRGGHPYTRPCGWHRVALKVLGRYDDDVWLGTRGIRTWSSEGEWAVSYHGTAAENIRPICSGGYDTGKCTKQMFGPGIYSTPSFAVAESYAKQFVLKGVSYKMLLQNRVNLVSSKIVPRESNCAEADYFVTPDDKDIRPYGVCLKQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LBS9</accession>
    <name>A0A7D9LBS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042504</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017313">
        <property type="protein sequence ID" value="CAB4031041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LBS9"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="460" mass="53254" checksum="AAF067C764542ACF" modified="2020-12-02" version="1" fragment="single">MLIELEKAAEDNPNSFWKTFRNASDEINNANSDNTPKGDDWFNHFSKLHCKHKLTKEHEKIVENLQNQEKLRDQHNTLDTEITEQEIIKTAMKLKLKKAAYSDKIKNEMIKSSADILTQGFVKLFNIILNSGKFPELWCEGLITSIYKSGNKLDPNNYRGICVSSSLGKFFCLTLNDRLMNYTEQEKMIHHSQIGFMPGNRTADHILTLKTIHDKYVKQHSNEKIYACFVDFKKAFDSIWHDGLFLKLLENKIGGRFYDLIKDLYTNTRCAVKISDRRTSFFPYRKGVRQGCVLSPLLFNLYINELPKLFEETISDPFILPNSTTISSLLYADDLVILSRSKTGLQNCLDTLHNWSEKWLLEVNLKKTKVMILQKHKSKPKNIQFNIGKNPISMTNEYTYLGLKLTPNTKFDIASQQLSEKAIHALYKIRKQIDLHQLPPKLACKIFDSVISPILLYNSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LBU0</accession>
    <name>A0A7D9LBU0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LicD/FKTN/FKRP nucleotidyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021596</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015069">
        <property type="protein sequence ID" value="CAB4027860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LBU0"/>
    <dbReference type="OrthoDB" id="444255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009100">
        <property type="term" value="P:glycoprotein metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007074">
        <property type="entry name" value="LicD/FKTN/FKRP_NTP_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052613">
        <property type="entry name" value="LicD_transferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13627">
        <property type="entry name" value="FUKUTIN RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13627:SF35">
        <property type="entry name" value="LICD FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04991">
        <property type="entry name" value="LicD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LicD/FKTN/FKRP nucleotidyltransferase" evidence="1">
        <location>
            <begin position="67"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="20409" checksum="BFB78F375EDC1B6B" modified="2020-12-02" version="1" fragment="single">MDENTRHRSKIEKIEIEIVPENNLESVLNPSNKLTEDAFYGPGCGGNPFRRRLQKLLRNWMKLMAHSNLEYFLCYGSLMGYQRTKDFIPYDHDIDICLNEKDFPSLIKKESQRPINVRDKLPHTIIARSFVNGKRLNCEGVLVDTKMDPCSIVSPAARIILGQYNFIDVYLYKTGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LRT4</accession>
    <name>A0A7D9LRT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048635</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023253">
        <property type="protein sequence ID" value="CAB4037580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LRT4"/>
    <dbReference type="OrthoDB" id="25620at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23354">
        <property type="entry name" value="NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="45431" checksum="C7C333E0313D4899" modified="2020-12-02" version="1" fragment="single">RHSDTMRRIRSSACVILINIGGDLTLSFNSANIQHVVMFNVRFIFNVESTFIFNVESTAIPPLITLRAAMKHAPSNKNLYSFGYVAESKGLLNKMNARRRRRRREEEEEKKKIILRRAFTTKFWFKYIHGASIKTAYVIDIIMQGNGLPNRTSTTSFPTVLLELSIALNAYGIVDYVSCSKVTDTAIAFAYSQPADIFALFTSMHVFNEVNVLYTYREGWPQYPHNCSVSLPRNLLTKGSIEEILSSQKAIDENVEKLRNQQPENLEPMNDGDIEYVPEVTENINVDHLIKKLGCVGTKLDPNLAKSSNILKGEIAFIKQMQEWLGDKCKWNLCYRASRDGWRAQDFHRQCDNKGPTVVLIKVDNYIFGGYSDQNWAVPETVSELPLIHTTLQGGDGMSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LW32</accession>
    <name>A0A7D9LW32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036201</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026053">
        <property type="protein sequence ID" value="CAB4039917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LW32"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="473" mass="53559" checksum="5DDCF42FED3D6A57" modified="2020-12-02" version="1" fragment="single">TNREIAIDDYKIHRLDRLHKKGGGVCAYIKKNIKATVLKDLSKVSVSNFHQLWINLQCQKSKSIIICVTYRPPDTSLNCFEDLLKPNYVQALTLNKQILVLGDLNCNMLENGQERRALTNFSTELNLTQIIKTPTRITATSQTLIDVILVSSTALVLESGVINTSISDHLPVYVLLKLKAPKMPACYITTRSYKNYNPSLFSSDLVTKSDRLLSILSNTNVNTILEPFKDVLHSTLDVHAPLKTFKIRNRSCPYVTNEIKELMKSRDLHLRRFQLTRDEGDWVVYKEYRNNVKIKIKAAAKDHTFNEVREHKHNSRSLWKIINNIIPSKEKETQVYSKDPKTVAEDFNLFFTSVGRNAAATAESLAKDNNVALSNPLSNVITYPSDQLFNFQSVTCTEVQRIIMAMPSNKSPGPDKIGMRVIKDCLPIILGPLTHMINCSLMTSTFPDLWKISEVIPLLKEGDHEIAASLTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M3P5</accession>
    <name>A0A7D9M3P5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029754">
        <property type="protein sequence ID" value="CAB4042243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M3P5"/>
    <dbReference type="OrthoDB" id="10030313at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000932">
        <property type="term" value="C:P-body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031087">
        <property type="term" value="P:deadenylation-independent decapping of nuclear-transcribed mRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033962">
        <property type="term" value="P:P-body assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025762">
        <property type="entry name" value="DFDF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019050">
        <property type="entry name" value="FDF_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13612">
        <property type="entry name" value="ENHANCER OF MRNA-DECAPPING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13612:SF0">
        <property type="entry name" value="ENHANCER OF MRNA-DECAPPING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09532">
        <property type="entry name" value="FDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01199">
        <property type="entry name" value="FDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51512">
        <property type="entry name" value="DFDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="13636" checksum="FEF33D2F85979B33" modified="2020-12-02" version="1" fragment="single">DGQVSPKKNYAAGKKFSTTEQKRSSAGNENRKSFKKKNKECFGTPLDDVKMPDFDFQKNLKLFDKEAIFEELRGSKSAPSAEKPQSSDRKLRHDENVLEQEQEPVNLRQSKLHIYCRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M4S9</accession>
    <name>A0A7D9M4S9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032502">
        <property type="protein sequence ID" value="CAB4043485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M4S9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="323" mass="36144" checksum="1A4E8FB5B3AB2511" modified="2020-12-02" version="1" fragment="single">MNYLNGLSYDSGTYVWLKTFEELERFVLEALNLKGKWKSPGGDVKVFKSEGEGEYMIKWRGPRSKKLVIQSDDAEENLKLKLESLINRDPKDVNPSCEASTKEVFSSVNELTEPSVSQFDGLKADIATLVDITSDLITEINSMRSKQKDFESVIRKQDSEICRLSEANLLLASSLRSLGNSTFKVMNINPMTNSPTNSMRNTTFNDPTTTDKDPPIDSNIYTSHTIGPTLFNEFNIYDEFRNIASDRPSVLNSDLNQSTEDIINISHNETDIHNESVLIVKDQPGVSNTDLLKNCTLTEATNLNKASKTKSTTGIFNTSTSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FG18</accession>
    <name>A0A6S7FG18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heterogeneous nuclear ribonucleo A B-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A052190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000087">
        <property type="protein sequence ID" value="CAB3978068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FG18"/>
    <dbReference type="OrthoDB" id="1875751at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd12325">
        <property type="entry name" value="RRM1_hnRNPA_hnRNPD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48032:SF6">
        <property type="entry name" value="RNA-BINDING (RRM_RBD_RNP MOTIFS) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48032">
        <property type="entry name" value="RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3978068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="313" mass="33798" checksum="B5C446AB371E1283" modified="2020-12-02" version="1">MATQISTINGDNSTRSASKMSGVGDEGKLFVGALSRETTVESLQQYFSIYGEVVDCNVKIDQITKRSRGFGFVQFKEASSAQRVLKEGPHVIDGKKVDPKKAAPQGKPHNSTRTKKIFVGGLKPDTPDEIVRNYFSQYGAVVDIDLVKEKETNRRRGFCFVEFDSEDVVDLVMQKQYHDLAQGIKVEVKPALTKEQQAAKKAHEMGGFRGLGRGMVGASFGYGVPAASYGQYQTPTVLYQTADPSAAGPAYSIGYPPGYSQPGAVAASPYAGVPGYDVQPAQSFATVRYPEVAGRGYGVGNPGANARYHPYAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FML4</accession>
    <name>A0A6S7FML4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A010381</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000344">
        <property type="protein sequence ID" value="CAB3981005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FML4"/>
    <dbReference type="OrthoDB" id="8056668at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="79"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="17"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="23675" checksum="495CCDDDF2F207F3" modified="2020-12-02" version="1">MQTEDSSKPLPKKQKQKLKEDNEVKKMMLLDKAEPRKDETTTEGLEETGSTASKKLIYNLKEIIALEDGDEHTDIDEIIEALDKELEELTDIVDTAVKRAKEHIQQRLAMGEEKSDTTSFLSKDNFNDGQSSVLSIQSSLALKRPKEKLSAKDVEAYKYWLFERSERDTFENLVSWLEMKVQIMDETKDERRDNKSDDKVEKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUS3</accession>
    <name>A0A6S7FUS3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific protein-tyrosine kinase</fullName>
            <ecNumber evidence="1">2.7.10.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A080599</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.10.2" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020000243">
        <property type="protein sequence ID" value="CAB3979949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUS3"/>
    <dbReference type="OrthoDB" id="6007004at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004715">
        <property type="term" value="F:non-membrane spanning protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055175">
        <property type="entry name" value="ACK/TNK-like_SAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22931">
        <property type="entry name" value="SAM_TNK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0728">SH3 domain</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0829">Tyrosine-protein kinase</keyword>
    <feature type="domain" description="ACK/TNK-like SAM" evidence="9">
        <location>
            <begin position="20"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="297"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="391"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="298"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="409"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="440"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF22931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3979949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="479" mass="53174" checksum="18BDD949D07F1925" modified="2020-12-02" version="1">MANSTEKETLNVNDQPISIFLEFADLAKFKTVFQGFGVEKFDHLNDVQDDDLLKFGLSNIEIRRFTRKVADFRSQHAIKGVTVENTSSAAGAREPVTKQQSTVLMGPLKPYRPQSAWKSTSVGFIPNPTTPRAEFMNSLLPEFYKSKFNHCKNAKQFVKEFHGTGRELYHSKQQIDEIDKQINSMMNKQNPAAAGVVLDKDYTLVPSDSIRINNNIQRAKQIISNLSSTDNKLKTLDSKLFSSTGKLKSGEEATHKFFEKQLGEVVLLHRKVTEINNQLTGLQEKFTRLFKVTYSKSQSRKRKQKQNKRKAKRAKQNRMEANCKQIVRTIAPQRNDSDAEPIGPLELHQEGIIGLKKRQLPYIQYAFDKELFTVAAKDTIKQYMTFSMSEIEEDDSDGSSADARDGSGSRDYGNGSSAYDDGSSADGDGSSSDGSRDDGNGSSTDGDGSSADGDGSRDYGNGSSADGDVEISTSEILDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2C6</accession>
    <name>A0A6S7G2C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075142</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000935">
        <property type="protein sequence ID" value="CAB3985895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2C6"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="425"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="457" mass="51279" checksum="50745890F85EC006" modified="2020-12-02" version="1">MRTYDDHLYITFDGNTVSEGSKSGSLMKQDTFCSKDNSEESAGEKDSNLIDQSLDPNKACGPGGIPNRLLQNVSTEIAPSLCKLFNLSLSQGVVPSEWKLANLSPILKTDDPTASSNYRPISLLNTISKVLERCVFNHCSKHLKPQIYHLQHGFMKGRSTVTQLVEVYDDIVNSVASGKEVDVLYLDLAKAFDKVPHNLLLLKLQLHGITGPLLLWMKSYLSDRKQRVVVEGASSDWLPVTSGVPQGSILGPLLFLVYVNDLPSCIINNSNIALFADDSKLYDRCEDKAELNKLKEEFNDILLNAEDERAFHLTKNAKQISRRKARKKTDPVSKMVRKETAMKTLRNDHDRLIRKSPVRFLSTPSPSVIKVPREELWQNNVNGSKNISPLENQNFPLNDMTGTAKREKFASLTTQHLRSRREIDATTESNVGPTEYAKHKKLQVAEEEIFPSKEEAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G319</accession>
    <name>A0A6S7G319_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon 412</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038599</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001164">
        <property type="protein sequence ID" value="CAB3987374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G319"/>
    <dbReference type="OrthoDB" id="5988675at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="74"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19736" checksum="0AA6D7BEAA5F6F17" modified="2020-12-02" version="1">MPVNVEEYISKCTAETSQEIIEAINQGVEAQAAGKTTWINAVTGNMDIADQNETAGATRQDISPKALYDHFTRFAQATRKKSARTTANKLYNDFVLQFRFPSRIHDDYGGEFENILFKHLEELCGVQHSRTTPYHPDGNGQAELFNQTLLATLRTLQEEKSNWAGILNKVVHVYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G976</accession>
    <name>A0A6S7G976_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000460">
        <property type="protein sequence ID" value="CAB3982070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G976"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15138" checksum="692D1CF9B750A51B" modified="2020-12-02" version="1">MTIYAATLEERRAFKALNPKLKSTVFGLLHENDLNLLVNESKHKHSKKKLDVTQPCDIGCLSTTSGMANYSLVEFTDESSDDEQLTPAAATSSRNAIEIAEAGSSINVNESAPAIPPIKNQLYGQWLQHLQKMPLLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GD11</accession>
    <name>A0A6S7GD11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001128">
        <property type="protein sequence ID" value="CAB3987162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GD11"/>
    <dbReference type="OrthoDB" id="10434349at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="188" mass="20859" checksum="53AC9D178EC113F9" modified="2020-12-02" version="1">MGAICSTICKKSHYHEVPYVPVCDLGINDGDIRRLWSYNSTTAGGKYVFVTNNPVPEGGSAYVVEATGEAQGTTLPLTAITFNLAQPIPKRFEMRFKKDNTWYAVNGSEYDLIASEITDTSFEVMELWSPNRPYYVLRSNKKVGDDDLFLSSDGAGKMQLKVWNNPVPGPPNTTSEVDPALLFRVVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKC8</accession>
    <name>A0A6S7GKC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067577</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001534">
        <property type="protein sequence ID" value="CAB3989686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKC8"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="942"/>
            <end position="1006"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="946"/>
            <end position="959"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="960"/>
            <end position="996"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1006" mass="114806" checksum="FBFA01E99E469B91" modified="2020-12-02" version="1">MELPVMGQFRATLECLTGATTTQVHVIKGNFGCLLSYQTASALDLIMLNVNNVKPEHATHEQLMKEYAHLFNGIGTLKKFEVKLHIDDTVPPVAQTPRRIPFHMRQKVPDALDTLESDGIIEKVSDATPWVSPLVVIPKKDGEIRLCIDMRMANQAIQRERHPTPTVDDLIHKLNGATIFTKLDLRSGYHQLSLAEESRHITTFVTHKGLYRYKKLNFGTNSASEIFQHVISEQIRDIPNAINISDDIIIFGITQAEHDKALHEIFERFSLIGLTFNKDKCEFSQSQLTFFGFVFSGDGISPDPAKVSAIHNCPPPNSIKAVRSFLGMVTYCAKFIPNFSDLTEPLRELTRKNVPFCWTSRHAKSFNAVKAALTSATVMAYFDQTKETELITDASPFGLSAILTQKVPGSDQQNVVAYISRSLSDVERRYCQTEREALAIVWAIERLHIYLYGGHFTLITDCKPVELILNNPQSRPPARIERWNLRLQDYDFNVRYTKGLDNPSDFLSRHLPVNNTTDDRQFQTMADNYVCFLTQHAVPRAMTLPEIQQATVADSTLQILSNLVTTGKWHLIDSLDVQSNPNVKVLDLKACEKIKTELTLNEHDGIILRGSRIVLPESLRLKAVQIAHEGHQGLVKTKQLLREKVWYPGIDKLAKHTVDTCLLCQANGPNSHQEPLRMTTLPPQPWHTVNIDFCGPFLGGSYLLVIIDAYSRFPEVEIVSSTSAKSTILKLERIFATHGIPKVLKSDNGPPFQSHEFSLYLKELGIKHKPSSPLWPQGNGQAENFMKPLVKAVKSAHHENKDWKREMFKFLLNYRATPHSTTGKSPSELLYNRKIQTKLPQVTVENDSSLHQEVKERDERLKKNQKEYADSKRRVKCADIKKSDLVLVRQPKANKMSTKYDPIPYEVTNRRGNRITAIRNGKYITRNISFFKKYHPRHGRSLESTEIMDEENYSSDEDVHEEHEQYDGLRQNDRPRQNNGQRQDDGPRYPARERQRVYRYGNNIYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKF7</accession>
    <name>A0A6S7GKF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">THAP domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A084902</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001193">
        <property type="protein sequence ID" value="CAB3987557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKF7"/>
    <dbReference type="OrthoDB" id="9934617at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00692">
        <property type="entry name" value="DM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="82"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="787"/>
            <end position="826"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="787"/>
            <end position="805"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="808"/>
            <end position="819"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3987557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="826" mass="93803" checksum="E9CD62D2DB62A341" modified="2020-12-02" version="1">MPHCMVPECTNNSRKTVGISYHRIPKEKGLREAWLARIRRVNPRDINNSCVCSAHFTPDCFERTLDLVPGYQKKPKLKSDAVPSIFPRSKPEKARSTGRRRNQIRSEQARQELSYCGRINFLNISAYIYNIKLCIYTSSYSKKMARTNMGNICINTHSVIFKILEDCISMQIESSSTSSQAIECTESESQSCTISSVSETQCPIDGMTASREIGIQCELLVDHIIKPMTSCIATQTESTLLELHTPALATVSGNDIAQSDQEVMYIDAPSLKESTSLPECHSPSTFAETTDLLEKVSPQKSICSEYTCTLTDTDTDHDEYYMPSAESQTETENESDVEIEKSPVEQKKFVVFEKNLDELFVTCSTCAKPIVEQSKKCIGSMVVVETVCVDGHQNKWRSQPMIGEKIAGNLLLAGSILFSGNTFQNVNSLAQCLNLAFIGRSTFYDMQKEVLFPVVDKAWKDHQVDLLNETKESSKLDICGDGRCDSPGHCAKYGTYTVMEENSSKILDFEVVQVTEVSSSNAMEAEGCNRVLKNLKTKGVKVRCLTTDRHTTVTAEMRKKHSEITHQYDVWHLSKWVVKKLTKKSKKKECKDLTDWIQSVSAHFWWSVATCDGNYELLIEKWTSVVNHISNKHSWRHAKHFKKCAHHKLTRREKKEKPWLKPGAAALVALEDIVFNKKLLKDLKLVTEFHHTGNLEVYHSMMLKYCPKRQHFNHEGMVARTQLAALDNNHNCSRKQAVVKKGSNVGSLRYNLVFPKMRKTWVVKPIKEAKQFDYITTLMENILRYKKSKKPKKSKKAKKSAKHAKNIATKEKPDKETAIKAHISRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GP97</accession>
    <name>A0A6S7GP97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC105924141</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035491</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002647">
        <property type="protein sequence ID" value="CAB3995354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GP97"/>
    <dbReference type="OrthoDB" id="5981463at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="482" mass="55848" checksum="2ACE2439B68A2952" modified="2020-12-02" version="1">MNIVEYLRRRLHDYYTALSIIVMHCIEQNICNEIVVMLREILHRLFASLERYNELCDFNFDGDDASEISSNLSFSEERTHEPGRPRINVSPDTLVDLYNLHNSWSIVSRQTGVSYRTLLRRRHEYGLQVANTVGPRNTYTEIGEEQLCNAVRDILRTIPDAGETYVIGALRSRGIHIQRWRVRNAIQTVDPISRALRRTFAVVRRVYNVRCPNALWHIDGHHKLIRWRCVIHGGIDGFSRCIVFLRCSNNNKADTVLSLFINGVRNFGLPSRVRSDYGTENYFVARYMLEHPARGVNRGSMITGRSVHNQRIERLWLEVKKLVVTYYRNIFYYLEQCQLFDPLDEIAMYALHYVYCPRINRALAKLMNSWNNHPMSTMNNRSPLQLWHSGFHAANTNYSEVQGVLDDTNQDWDEYGIDGDGPIPDADDVVEVPETHLTLTEAQLNQLQMLVDPLANDDNHGINLYNMTIGIFRDWSGSDLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZB9</accession>
    <name>A0A6S7GZB9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036984</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002693">
        <property type="protein sequence ID" value="CAB3995592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZB9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="8001" checksum="DECB4E641E59B558" modified="2020-12-02" version="1">MKKNKDMEEAEFIKAIVLFDCDDADTLETLALVVGLSSVGKHWALRANSFSLCIQCFRGIEENHSYDFSAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H015</accession>
    <name>A0A6S7H015_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086664</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003041">
        <property type="protein sequence ID" value="CAB3997175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H015"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11328" checksum="5A7888D20F9883FB" modified="2020-12-02" version="1" fragment="single">DLLYIPLEKLRLQWGHSWATSQATTEKAEQPQQQIPVTQEGDFPVQTQRPYQIRFSAEETQIIDSEILKYLSKHVIEPVCVTPESFVSTIFIRPKKDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H173</accession>
    <name>A0A6S7H173_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Potassium voltage-gated channel subfamily C member 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A008885</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003137">
        <property type="protein sequence ID" value="CAB3997585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H173"/>
    <dbReference type="OrthoDB" id="6020680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005251">
        <property type="term" value="F:delayed rectifier potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001508">
        <property type="term" value="P:action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000002">
        <property type="entry name" value="Potassium voltage-gated channel subfamily a member"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003968">
        <property type="entry name" value="K_chnl_volt-dep_Kv"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537:SF252">
        <property type="entry name" value="POTASSIUM VOLTAGE-GATED CHANNEL PROTEIN SHAW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="VOLTAGE-GATED POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00169">
        <property type="entry name" value="KCHANNEL"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01491">
        <property type="entry name" value="KVCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0407">Ion channel</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0630">Potassium</keyword>
    <keyword evidence="5" id="KW-0631">Potassium channel</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="18"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="175"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Ion transport" evidence="14">
        <location>
            <begin position="3"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="339"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="350"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3997585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="534" mass="60654" checksum="1057462F7E28AED2" modified="2020-12-02" version="1">MFCVNTVPELSADKRWRYFFTILEFICGVWFTIEFLLRIVFCPDKRAFAKSWSTWIDFLAITPFYLKLFVSNHENAINALLVIRLLRLFRFFRLIYGLQVLSHTLKASSYELVLLLSMLLIPVILFSSIVFFIEDHFDRPNTKFRSIPHSFWWSLITITTVGYGDMHPVTWLGKIVGSMCAICGVLIVALPVSIIGSNFSLFYTHAQARLKLPKKKHRLFIQQTSTMYSERQMPRRRTLRRKVSSRTSDTCSFMMCGDSRASSVQGYNLPNGTKRSSVIAKDESKLHASVRRVPKKISTISIKIPALESPVENNSYEGSEVPSPRGYSSFDSTHYVTRRRSLTTPADGVKSTNNNTEGESGESLGSMNNTYKRNVRCNGAQSTPEIIPLLIEPDAPTVMLKDSDTIETCDSPCPDTSEQLSDQHHLSVEREEYLTVQMAIEAETEQDACDINDACMLTEGSVSIKRVPRRRKDGVVNWKRRPSSLESISEMSINNRQPNSVNDSGVEVLDENILGPEITMPAVHFNRGRRQPIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4G3</accession>
    <name>A0A6S7H4G3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064007</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the dynein light chain Tctex-type family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003464">
        <property type="protein sequence ID" value="CAB3998896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4G3"/>
    <dbReference type="OrthoDB" id="10260741at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005868">
        <property type="term" value="C:cytoplasmic dynein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045505">
        <property type="term" value="F:dynein intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd21459">
        <property type="entry name" value="DLC-like_TCTEX1D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1140.40:FF:000003">
        <property type="entry name" value="tctex1 domain-containing protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.40">
        <property type="entry name" value="Tctex-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005334">
        <property type="entry name" value="Tctex-1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038586">
        <property type="entry name" value="Tctex-1-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21255:SF7">
        <property type="entry name" value="DYNEIN LIGHT CHAIN TCTEX-TYPE PROTEIN 2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21255">
        <property type="entry name" value="T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03645">
        <property type="entry name" value="Tctex-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="14160" checksum="907D392D2E90CBBD" modified="2020-12-02" version="1">MSEEVENSYKIRPNFKEKFRPVTIKSLIHDVLNEELSGKQYNSEECTTWSKTLSEAIKTRVKGLNLDRYKILVQVVIGEQRGEGVKVACRCLWDSDTDNYAQDIFMTDTFFCVASVYGVYHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4V9</accession>
    <name>A0A6S7H4V9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A061395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001823">
        <property type="protein sequence ID" value="CAB3991301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4V9"/>
    <dbReference type="OrthoDB" id="5965425at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="238"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="19"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3991301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="372" mass="42056" checksum="075D1352DE7073B6" modified="2020-12-02" version="1" fragment="single">EKSKTLKRGSIPTINLPKKSHEESKPSTSRRIIEKKELVPSKVYKDINDLKSKVSKLGLTGWSRKFDENTFSLDYFDGKHALPLYTLKVDSGLGFTVAAFGWFLPENHHIYLEHKHSVTYVSVASLITEIRNLYVCPGLPLTDSTTTLLHVTDPVDGVSEVTRHTVPLCPEVYCDKDTPYQVSLYLRSADCLMLQTSGEEACDSCSKVLASEVKRQKQSVIKKATSLKEKAPLSGSSKERLIATIQQQRIEAKGLKDRLSGLEKEINSNSITVNESLEGDILNILGNADLKKTPHMDFFWQQQKKLLSSPKFGRRYHPHLIRFCLSIHAKSPSVYRELSSSGVLVLPSERVLRDYRNFFKDSTVRILKQQSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H5R5</accession>
    <name>A0A6S7H5R5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031192</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003318">
        <property type="protein sequence ID" value="CAB3998292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H5R5"/>
    <dbReference type="OrthoDB" id="5986399at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="381" mass="42476" checksum="7A50F5B6B9127887" modified="2020-12-02" version="1">MSAKDPVVIKSKGKKTNKSKTTINAKIPQNVETRKPEASTSSSNPTSNRDTRIENAIIAYVHKLSPIQRNRKNTVDYSTLVLQTEGKNIDALLYSKNKRQLLMDSEQSHTPLKIQKFTKSALGEKIIINDMTKLSTPDQTEYRFQFEKIANPGDQIIPIEEILNNREPSDSVALRAKAIYVAETTVVGAKNLKLAQAIFADSSGKIRVNLWENQIPLIQAGQMFTITELQVREWSGEKKVSTTVKSVIKSITDEALEKITVSEAEIETIAEKVINVPFIDMVKSVNMSILCSNCSKKILQATANNIVRCDRCGCRMRLVSCKKQLSVQVLVKPIDGGAIELLIFQDSLKNIINSLDTLNEDQVAESLLALDNLQIKYDPTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H645</accession>
    <name>A0A6S7H645_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048159</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003592">
        <property type="protein sequence ID" value="CAB3999456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H645"/>
    <dbReference type="OrthoDB" id="8060926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17960" checksum="5AB72ED92FCA592C" modified="2020-12-02" version="1" fragment="single">KKTGVAFDNFDRFVETLSGKDTLHDTVGIAYQILSEEKSTIEESSESEYVRVVASRKRRRRAFQAIGLDIHVEPYWKKPAMLTVPVLPLDDPRKAFEAESYLNARAYDSLWMKDFCFSPNDTPMWVEWNAKLFNDTPMWVGWNASCTMQKTPKVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HN32</accession>
    <name>A0A6S7HN32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A053811</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005788">
        <property type="protein sequence ID" value="CAB4007405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HN32"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043467442" evidence="2">
        <location>
            <begin position="26"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4007405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="304" mass="34557" checksum="E29C8A14CE1A08E2" modified="2020-12-02" version="1">MCFNKLLTFILAIFRLFNLATQCIAESNSPIVGPRHALPELSFATSNGEVSCIVELSLVGLLAGLVVVPTTGVDKWIYEHASDCLVWTANEITANIDHGPRQERWYEITDGEASVIDDNNIPRSLFDSTVVKNISYQDLREMAVEPNVSRSNPADSCAVHRSFVRDGEQERIAVPRYLRRSFQLPSSSSALSDEENNHCPLELCKPPTHDEAEPSQKYQKTQGEEEEEEEQVSSPEDVFQIISTQTGWVMNDDKYMYKVYEHIRWRCPAEQLPQRPILAFCTRRDAAKREEKDVFTKPDPYIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HS88</accession>
    <name>A0A6S7HS88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Scavenger receptor cysteine-rich type 1 M130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005769">
        <property type="protein sequence ID" value="CAB4007339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HS88"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="34810" checksum="417E2F99FB0F1B2E" modified="2020-12-02" version="1">MSLALSDLNQKVKDTENEKLSLVTALKILYQEQKRTPQDKDQIHTHANLGKQTNNNGEQTYSTVDSTTPEQSYNVVTRNRYEVLGNGEDQYNTAEQQSKTTQTSREMRPKTSRKVSTNEDQTKASSETSPRTYNSGNQPRRTINVAVAGDSMLKYINPSKLSKSLKQNVHVKTFPGAKVADMEHYIKPTLAHAPEYLVLHVGTNELRQKSPRQIATSITKLGHEIYANMPNTKLILSEVIVRNDDPQLMIRVKEVNSKLSQVCLSNRWDLLTHGNILVKHLKPYGVHLNKQGTAILAKNLSDFLKLKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUC6</accession>
    <name>A0A6S7HUC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006362">
        <property type="protein sequence ID" value="CAB4009164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HUC6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="20519" checksum="0EE7D98971D9960C" modified="2020-12-02" version="1" fragment="single">MLHNRTIKKCPIPSCTTSQRGLQSQRLCPLPLKNVDHQLRLKVLGRFKVSGEEKPCRKCRSTMMAFIKEAEGSKMPLPAVCRTSMNSNTIPSPATCTTPVTNTASIGRPRVNYTEASEVTKRRMKASARMVLQNTVGQCNKISQGDGLELLQDVTANTRINNCANKGEKYQQKISEVMDGLSQTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWT6</accession>
    <name>A0A6S7HWT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089048</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006363">
        <property type="protein sequence ID" value="CAB4009167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWT6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11760" checksum="4B6D2FB8F45C8A93" modified="2020-12-02" version="1" fragment="single">MKVFIICLIIAISGFAKSEIYENENFDESSEDNSVFDKILAINEKSARSRSGHKAKYFEGDIVITKSVEEMIENRKRGAASNNKWHIWPIKNGRHEIPYQIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I7V9</accession>
    <name>A0A6S7I7V9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">UDP-N-acetylglucosamine 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="11">2.5.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Enoylpyruvate transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">UDP-N-acetylglucosamine enolpyruvyl transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A077347</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18681"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="EC" id="2.5.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the EPSP synthase family. MurA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.7" evidence="11"/>
    <dbReference type="EMBL" id="CACRXK020004395">
        <property type="protein sequence ID" value="CAB4002601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I7V9"/>
    <dbReference type="OrthoDB" id="7788545at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008760">
        <property type="term" value="F:UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019277">
        <property type="term" value="P:UDP-N-acetylgalactosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01555">
        <property type="entry name" value="UdpNAET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="entry name" value="Enolpyruvate transferase domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050068">
        <property type="entry name" value="MurA_subfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005750">
        <property type="entry name" value="UDP_GlcNAc_COvinyl_MurA"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01072">
        <property type="entry name" value="murA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006873">
        <property type="entry name" value="PRK09369.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43783">
        <property type="entry name" value="UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43783:SF1">
        <property type="entry name" value="UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="EPT/RTPC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-0133">Cell shape</keyword>
    <keyword evidence="9" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Enolpyruvate transferase" evidence="16">
        <location>
            <begin position="6"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00038367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00039108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00039754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00042443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00042842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00047527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4002601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="466" mass="50476" checksum="6E5B4AC9F3A61005" modified="2020-12-02" version="1">MPELMVTGGRKLQGRIKISGAKNAVLPQMAASLLTREKVTLTNVPDITDVRDMKSTLEAYGVTVKWDKPNSTLVLQAGSPTSSLPGTNAGAEIRAAFLVFGPLLARTRRVEVYKPGGCKIGKKGRPVDYHIQAMKDMGAELIKESAEVVSMRADSGLKPATITFKNSSVGATETAIMAASLVKGETVIRNAAIEPEICDLVKMLAEMGAQITIEKDVLISEKITPFGITEKIAKWNVIRVRGCKSLEGVTHQVMPDRIEFGTYAIAAAMTNGKVEFEVPEDMKEDMLKAICQPLDAAGVKIDRYSQYGLIVISLKNGTITPVDIKTGPYPGFPTDLLPQWVAFMTQAQATMTKEYAIIHDKIYDGRFNYVDGLKKMGAVIEKVNEREYGVKAGSKLNGTRVEATDLRGGAALVLAGLVAQGSTVVRKFELIQRGYQDMVGKLNKCGANLKILKETRPGFHGGPGHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IC81</accession>
    <name>A0A6S7IC81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051874</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008512">
        <property type="protein sequence ID" value="CAB4014947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IC81"/>
    <dbReference type="OrthoDB" id="2096344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848:SF8">
        <property type="entry name" value="F-BOX AND WD REPEAT DOMAIN CONTAINING 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="25443" checksum="C6D74CC8E5928FF9" modified="2020-12-02" version="1" fragment="single">MASIVLYLYLYLGVELAVVLKDKSFLGHFARNAHVFECKELQVLEGRTNAVWCLVLSHSQRHLASGSGDNTATIWNTDTFEQLKVLQVEGGNVYALDFSTDDQRLFTGSVDGNLRVWRVTTGERLYVIPAHDGAITSLCTTKDGLYIATASFDHTIKLWRADTLNFEATLVGHTDVVKCVVAAGNDNPMLVSASWDGTLKIWDAKKHKEIHTLRGHEGKIYSVAVSSDTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICN3</accession>
    <name>A0A6S7ICN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A067804</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the actin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009162">
        <property type="protein sequence ID" value="CAB4016544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICN3"/>
    <dbReference type="OrthoDB" id="337660at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.640.10">
        <property type="entry name" value="Actin, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004000">
        <property type="entry name" value="Actin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11937">
        <property type="entry name" value="ACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00022">
        <property type="entry name" value="Actin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00268">
        <property type="entry name" value="ACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="38"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="143"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="296"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="57"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="149"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="855" mass="96709" checksum="670B29D9873FAC59" modified="2020-12-02" version="1">MLRSRTVRCLTKQIQQRCGDSNMQLPRWSVNTDKEIIRDPNDSFTNSEPYLHESVAPETNDSPNESTTIMKSENLNNTIYENCNGFEKTYETSSNFDRTVDVFEENNAQNKSEVLQKQSGNGHQNGNPQLSDEDKLLHEDKINTSTVSDRPKDSLDTENPQKGKNINTIVQPRKGGKNNTVTGTETRQEASFDSYKLEKVKEDFSLANSIHDERKHDSEQQFVNSHAADTGVQLFLNVSNFNSDESDGETPRVNSISKHILEPVEERVTVEVLQPRQSGVAEMSEKEGLQVGYNAPKLVDEDSHTNALKTSSDRPDSMLNSETEETSSKSNVKTMGWDPSLLIKRILGKVKPVNTEEVENADAEEIHMAGYLEKLPVNQKKATLLKSWRKRYFKILHGKLFYFEDHRSAAPISFIKLGGCQVVEMGSKCLAVTENDEDLGGRMVVIRCGSWPELQDWRKALESEAKTKVKRQHFELVQEKKQVIIIDFGSSSIKAGFLEDQAWPQVIIPSVYAINKEDSKSRLYGYEAITPLVRNTCKLVYPLRSPLTIGKYLLDPNDLIGFLEIIFQELQVDPSQYQVVMTTPVNLRDQDKERLVEMLFDYFQVATVYMKCQAILSMYSYSATCGIVVNIGDHIDVVPIEEGYVVESGMNSLPYGGRQVTDHFMRLLSSSGYRYFSDVENYIAEYLKVKTCYVSQDFSKETEQFSESDYLTVDMSEFDLPSGDKLVTVTNERFTAFEGLFKPELWGKDNPSIPDMVYNAVMACSIDNRKEMCRNIFLSGATTKIPGFADRLQTELSGKFPSSLVIQVHAARDRQFAAFIGAAVLASLESFADLCISRDDWEETGPELLKKWDGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKS4</accession>
    <name>A0A6S7IKS4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ankyrin repeat domain-containing 17-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A009700</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009773">
        <property type="protein sequence ID" value="CAB4017933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKS4"/>
    <dbReference type="OrthoDB" id="10071877at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.20:FF:000046">
        <property type="entry name" value="Ankyrin repeat and KH domain-containing protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.20:FF:000041">
        <property type="entry name" value="ankyrin repeat and KH domain-containing protein 1 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.20:FF:000012">
        <property type="entry name" value="ankyrin repeat domain-containing protein 17 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.20:FF:000131">
        <property type="entry name" value="ankyrin repeat domain-containing protein 17 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051631">
        <property type="entry name" value="Ankyrin-KH/SAM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23206:SF8">
        <property type="entry name" value="ANKYRIN REPEAT AND KH DOMAIN-CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23206">
        <property type="entry name" value="MASK PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="25"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="15"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="19"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="608"/>
            <end position="679"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1076"/>
            <end position="1168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="628"/>
            <end position="641"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1076"/>
            <end position="1085"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="1087"/>
            <end position="1103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1104"/>
            <end position="1116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1137"/>
            <end position="1165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4017933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1184" mass="126660" checksum="A3CC1611BD324DB7" modified="2020-12-02" version="1" fragment="single">APGIHSLANACLEGNVNAVRKLLEQGWSVHDSTDEGESLLSLACSAGYCELAQVLLAMNAKVDDRGSKGDCTPLMEASSGGFLDIVHLLLDHGADVNAQSQAGNTALIYACCGGYEDVVKVLLDHDAEIESHNENGHTPLMEAASGGHVNVAKLLLERGACINSHSNEFKESALTLACYKGHVDMVKFLLDAGADQEHKTDEMHTALMEASMDGHVEVARLLLDHGAEVNMPADSFESPLTLAACGGHVDLASLLIERDAFLEEVNDEGYTPLMEAAREGHIDMVALLLDKGADLHAQTDETQETALSLTCCGGFQDVAAYLLDRGANIEQGSSTPLMEAAQEGHVDLVKFVLEKAGADVNATTGTGDTPLSFACENGHTDVADILLEVGAELEHESEGGRTPLMKAARAGHLCTVQFLISRGADVNRATTTNDHTVLSLACAGGYLAVVELLLAHGAKPDHILKDNSTMLLEACKGGHTSVARLLMETPLHGNHPEYHFTSIQTPSSPSSPPRVPPVHSLDQLDPNLPLPGLNCTHHDLLPSSSIMVPPGLLPSTGVPMTDDKLGFLTTSLYKNAFLNELEREMPSLTPEEQQRIEAELERVKHEALEITTPPSPFRLDPTSADVDSIGDGEESGASDDEASLHSGYADNSDDGSPCEYVGPSSMPLTPTPSPASPTFVPAIDIEQQTDSNHDTALSMAAAGGHDDLVKLLLQRGSELEHRDKKGCTPLILSATGGHASTVQMLLDQGADIEAQSDRTKDTALSLACSGGRQEAVEVLIAGSANFEHRNVSDYTPLSLAASGGYIGIVKILLAHGAEINSRTGSKLGISPLMLASMNGHTATVKLLLDMGADINAQIETNRNTALTLACFQGRHEVVSLLVERRANIEHRAKTGLTPLMEAASGGYIEVGRVLLEKGADVNAPPVPSSRDTALTIAADKGHQKFCDLLLSRGAIVEVRNKKGSTPLWLAANGGHLEVCQLLARYSADVNSQDNRKVSVLMAAFRKGHVKTVKWIVRHVTQFPSESDSARFISTLLNDKELLKKCQQCMNVIRHAKDLQEKEAAKNASILLQQVDMEKEREEVKKQAAARRREKKKKKKKNKLACKDENDKVVGKEEDGEDDEEPMVIVKEESEESPQEKSEDTAERSPSKKDSPSGNRTKKEAMDTLTSIAITTAVASGVSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKT7</accession>
    <name>A0A6S7IKT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085185</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010581">
        <property type="protein sequence ID" value="CAB4019684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKT7"/>
    <dbReference type="OrthoDB" id="7415700at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15489">
        <property type="entry name" value="PHD_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1099" mass="126502" checksum="8A542B5FB290D6B6" modified="2020-12-02" version="1">MAVALKSVLLVVIILMIKKPCFTNSSSCCYWEASKDSNSFEGTYIYPSLWQYKQERCLVVTRASLLRILLLLAGDVELCPGPMKPQCQACWKTIRRNQISGTCAECKNAFHLKCLKDELRNNKEKFYCNICFVNIADQDAGSPQTVDSNVLCTFMKKRGLKLFHQNVNGIMNKLDQIRLFLCKKDVHIFGISESHTSASINDSELEVDGYVVERKDRNSAVYGGVLCYIRDGISFQRRKDLEIDGVEAIWVEVFIVNSKSILICIVYKPPDSSLYLDKNFNSKFDNMLDIAINENKEVILAGDLNCDYLAPTDHRELKDVFKVNGLKQLITTATRITAHSKTLIDLFFTTHEQHIADSIVYANSLSDHDLTGIIRKINLQKFKSCKIRKRDFSKYDKMSFRRELSVIDWNGEFCGYDLNHDWNIFKEKLSRTIDNHVPFVEKSIRGRVCPWLTRELKSMMISRDYYLKQARQTNQELHWSTYRRLRNLVTSAIKHNKANFCRNLLYNNGESPKTFWKLIKKLYPGNNKTSKSSFFKVNNELVSDTRKIANGFCRYFSTIGSRLQQNVVTITNKTCSSLRNDDNLMHTINPTGKFFKFSKVNCSKVAKILQSMRISKAAGPDNLPASLLKDASEELALPLCILVNMSFEYGTFPNAEKCGKVIPIYKSEDRASFDNYRPISVLNTVSKVIERIAHQQITDYLERNQLLCPQQFGFRRGKCTQHAVTYLNEHIRQNMDKSRCTGVVYLDLRKAFDTVSHACLLNKLPYYGIRNIELLWMKDYLLNRSQFVYFNQVKSDEEHVSCGVPQGSILGPLLFVLQINDLYLSLKKCNIIMYADDTVLYYSANGTDEIQRSINSDIERVSQWLDSNKLIVNLKKGKTEFVLYGTPQKLARQQDCSIMMNGTSINQVKEYEYLGIIMDNHLTLSSQVSKVYKRVSSRLSQLSRIRSNISPYVAERIYRTMIYPIMFYCYPVYLGLSNTANSKIQRLQDRAARIIGPKNCLHDDCVTSRKRCVVMDVFKSLHSIGPNFPHVNFQRFNHGINTRSNNSRLIVPKVKTEAGRKSFSVQGVLLFNSLSEEIRNENSYINFKRKVESFNFSSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5Q5</accession>
    <name>A0A6S7J5Q5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Potassium voltage-gated channel subfamily C member 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A064575</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007588">
        <property type="protein sequence ID" value="CAB4012651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5Q5"/>
    <dbReference type="OrthoDB" id="10025005at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005251">
        <property type="term" value="F:delayed rectifier potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001508">
        <property type="term" value="P:action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.710.10:FF:000002">
        <property type="entry name" value="Potassium voltage-gated channel subfamily C member 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003974">
        <property type="entry name" value="K_chnl_volt-dep_Kv3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537:SF252">
        <property type="entry name" value="POTASSIUM VOLTAGE-GATED CHANNEL PROTEIN SHAW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="VOLTAGE-GATED POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00169">
        <property type="entry name" value="KCHANNEL"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01498">
        <property type="entry name" value="SHAWCHANNEL"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0407">Ion channel</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4012651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="21097" checksum="C8681B7AE42D8CBD" modified="2020-12-02" version="1" fragment="single">MLGGERADNERVLGTRNKIILNVGGLRHETYVGTLRNIPDSRLFSLTNNNPTQVPEFDPNSGEFFFDRHPLVFAQILNYYRTGKLHCPNDVCGPIFEEELAFWGLEDASIETCCWMNYKKHGEAQANLSSFDRMVEEGASEHEYSFHEEGDVGLQTRSYKQVLCKYKSRVWLTMEEPSSSFTAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J843</accession>
    <name>A0A6S7J843_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Synaptotagmin-15 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021385</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006260">
        <property type="protein sequence ID" value="CAB4008878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J843"/>
    <dbReference type="OrthoDB" id="10259057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070382">
        <property type="term" value="C:exocytic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005544">
        <property type="term" value="F:calcium-dependent phospholipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030276">
        <property type="term" value="F:clathrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001786">
        <property type="term" value="F:phosphatidylserine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000149">
        <property type="term" value="F:SNARE binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017156">
        <property type="term" value="P:calcium-ion regulated exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00276">
        <property type="entry name" value="C2B_Synaptotagmin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001565">
        <property type="entry name" value="Synaptotagmin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10024:SF374">
        <property type="entry name" value="C2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10024">
        <property type="entry name" value="SYNAPTOTAGMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00399">
        <property type="entry name" value="SYNAPTOTAGMN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="42457" checksum="483AE4178E2C15EF" modified="2020-12-02" version="1">MDVNVLIFVISAVAAIVLLSIVVAFVKLLRKTYSSTHYNKIKEEDKTNFRFVIPTHVPKTTALHEYGDDDVTDTDCGKIDVDMIDPELYGNASKETRKDSSATTLGWLCFSVRYEHETEKLIVDLVRGQHITQRKNSTADLATPYVKVCLLPDKKKKLQTKTRQKTPNPLFNEQFIFSCSFSGLKERSLRFTVFDFDRFSRQSAVGKILYPLEEDYENILMEGGCEEIWREIDDCGTCEVENSYIGEILFSLQYLPAAKRLAISVMKGNGLGIEGNSKTPSVHVRIAMILGGKTAHVRKTTKKSSIEPVFNESFHFDLPDDSLERTSFVLTVTNNKVIIGRIFVGPPMYVTGTGLSHWNSMFNSPRNAVAMWHTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8A8</accession>
    <name>A0A6S7J8A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007899">
        <property type="protein sequence ID" value="CAB4013471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8A8"/>
    <dbReference type="OrthoDB" id="10568324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00117">
        <property type="entry name" value="TFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10036">
        <property type="entry name" value="CD59 GLYCOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="16332" checksum="BDF9E5DED239F2B0" modified="2020-12-02" version="1">MFSTILLALGVVLAISASGSALKCNVCAYWTTQPKEQQKCPNTTVNCITGTSYCYTASVADQNDYFTRGCATNATLCLDPEKLCNVATTKLNLKSCALECCTTDNCNNYTLSSATGAPSRATGAPSSATGAPSSATSVMVSKFTLSLMVIVGFICLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J979</accession>
    <name>A0A6S7J979_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase recombinase xerD-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036011</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013668">
        <property type="protein sequence ID" value="CAB4025550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J979"/>
    <dbReference type="OrthoDB" id="5965134at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052925">
        <property type="entry name" value="Phage_Integrase-like_Recomb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605:SF6">
        <property type="entry name" value="TYR RECOMBINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="28928" checksum="6089BC5CFCD5A231" modified="2020-12-02" version="1" fragment="single">KQNVSAACMAYAALKWVHGILPLPQNPLAADICRNMIEVEKTSRTSPVVQKEPASVELIKDIVRKYRRKDAIRKDLRLATMRVLSFAGLFRAKELLKIRVRDIMWFDDHFVINVPESKTDIYRQGQQVFIARFNAETCPGVLINRYLAKANILLNDSEVHLFRNLVYLKSVDSYTLGERVLSYIRFRENFKECLKELGYDEKLYGLHSFRAGGATTIAKSLTAPNKERLLKLHGRWKTDISKDISTLKKIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JF86</accession>
    <name>A0A6S7JF86_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082014</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014950">
        <property type="protein sequence ID" value="CAB4027670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JF86"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF29">
        <property type="entry name" value="PEPTIDASE A2 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13157" checksum="03C168BF84E23AE6" modified="2020-12-02" version="1">MANYSSNYIRDFATLTAPLRDLTKKDVRFEWTQTHQTAFEKLKNTLAIAPCMSYFDKNKQTFVTVDASPVEISGILSQKPRNGDVDSQQIIAYASRALTDTEKRYSQTEKEALAIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JG51</accession>
    <name>A0A6S7JG51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008830">
        <property type="protein sequence ID" value="CAB4015752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JG51"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19912" checksum="A0A2946D1F1C9670" modified="2020-12-02" version="1" fragment="single">MFNLVVLIDLKKAFDTVDHQILLKKLELYGIKGQALSFLESYLSNRNQKCQMQGSVSSEKLIKCGVPQGSILGPLFFLLYINDLPQCLDKTKPRLFADDTNLTVSGNSITDLETAVNSDLEKLRKWLIANKLSLNVAKTEFMLIGSKQMIKNISNLQLNVKIENESIKQVYESKTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPF1</accession>
    <name>A0A6S7JPF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Maestro heat-like repeat-containing family member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A007029</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. NNMT/PNMT/TEMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009983">
        <property type="protein sequence ID" value="CAB4018392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPF1"/>
    <dbReference type="OrthoDB" id="5945614at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055406">
        <property type="entry name" value="HEAT_Maestro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000940">
        <property type="entry name" value="NNMT_TEMT_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10867:SF17">
        <property type="entry name" value="NICOTINAMIDE N-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10867">
        <property type="entry name" value="NNMT/PNMT/TEMT FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23227">
        <property type="entry name" value="HEAT_MROH2B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01234">
        <property type="entry name" value="NNMT_PNMT_TEMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51681">
        <property type="entry name" value="SAM_MT_NNMT_PNMT_TEMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Maestro/Maestro-like HEAT-repeats" evidence="5">
        <location>
            <begin position="3"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4018392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="31771" checksum="D403952D1C686237" modified="2020-12-02" version="1">MIVANMMGRLVDSDHVVRKYCIRGLGNVGNTHETLVQKHSTTILSAMMTGMDDRDDPECDLTLEAMAGLSKILAVVDESNVRHIFINICLRIRPCFVKIAGDPDAHDWMPLIKIAVLELEQGRGIVDGSSESSADKEKLERVLNAAANEVKRKIKSIVPCDVNKAPIVQLDGVDVAKPFDVVSTSLCLESCVSSEAHYKSGVAELCKFLKRNGYLFMNGVLEETYYYVGKEKFHSFPLTEKMVKAAMIKAGIEIEKFAAIPGIPVDHTELTDATDIFYIYGRKSVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQ12</accession>
    <name>A0A6S7JQ12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020331">
        <property type="protein sequence ID" value="CAB4034685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQ12"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="188"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="202"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="28488" checksum="608B9674473E3794" modified="2020-12-02" version="1">MVPHSEDKVRHSQDIGTSISGQGSSLGRQGKVPHSEDKVPHSDDKVPHSEDKFPHSEDKVAHSEDKVPHSEDKVPHSEDKDKFPYSEDKGPHTEDKVPHSEDKVLHTEDKVPHTEDRVPHSENKVRLSEDKLSHSDDKVLHTEDKVPHSKNTEEPSPQSENLVLRVRKLVVRMRNLVFRVRNLLQSEKPCPQSADPSHQSEEPFPQSEEPCPQSEESCLRMWNLVLRVRNFVLIVRNLFLRERNLPSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JU51</accession>
    <name>A0A6S7JU51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018682">
        <property type="protein sequence ID" value="CAB4032770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JU51"/>
    <dbReference type="OrthoDB" id="411372at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="20069" checksum="C5771A3CED6DBDCE" modified="2020-12-02" version="1" fragment="single">LKEWANDKFTVDSNLSAAKVILQLDQKGAINASDLGQLRLFFESITRFDLVYLIDEFYDGDYNKLRKLINQHKSINISHERVANINRVHSSRVLLPHNSTPRSLLRSNPVNRVSNVEVFERPSKADENNGVSIVRNPHVPHSNVASTSNSIVISGSRCSTYENSEDVPDCPAVNNTRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXS9</accession>
    <name>A0A6S7JXS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A043388</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020582">
        <property type="protein sequence ID" value="CAB4034974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXS9"/>
    <dbReference type="OrthoDB" id="5988360at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="129"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="55"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="164"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="148"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="579"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="579" mass="66072" checksum="8FA4F41195D2EB1F" modified="2020-12-02" version="1" fragment="single">MAEYDGNSLSSPVVSEHGEKRTRMFTHKGFRNTLINQTKTFNKQTKVLRVAIDLVYKAIEENSAIKEALDSLEKERRMLVNSVKSLEELFAQDKWGETTDVEPTIRKAFESFLHAAEVVSQEAGKKLDNNKSRVANTTSVRSRRSRTSVKTGSTRSSLHSERRIAMAEAAAAKEQAEYDRLIAQMEKDRKQREAQEVLERSAAQARHEHDIAVLAARKLEAVAQAKLEAIERSIIQEEDDSYSGKSSRKASVEPLERTKAWVESQPPFEGDVVRKIKREVNDEFNQTLPHPIGHRSERHHIYETQEPSRVVQQCMGAIATTNEKLTASLAKLSLPKCHPDVFSGDATMFHPWKSAFKGMTESCNVTPENEMNYLCMYTTGEPRKLVNGYRKRRHKDLEKLLMELWMELEKRFGNVAVITNAFLTRLRESARFGEYDKKKLQAFSDLCSDVVSQVSQLPGLACLNYPNAIRPILYNLSESLRNRWDKQVVEFTLKNKDAYPDFTVFASMIEKQSLLKNHPNVTAFEKRGKGDRRKPFIPPLIPPEDPLHTVLAGETKTEDEEVKEKHCPFHKCIGHTLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZ99</accession>
    <name>A0A6S7JZ99_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">glutamine--fructose-6-phosphate transaminase (isomerizing)</fullName>
            <ecNumber evidence="3">2.6.1.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A058475</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; alpha-D-glucosamine 6-phosphate from D-fructose 6-phosphate: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020024126">
        <property type="protein sequence ID" value="CAB4038366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZ99"/>
    <dbReference type="OrthoDB" id="15235at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006002">
        <property type="term" value="P:fructose 6-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006487">
        <property type="term" value="P:protein N-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006047">
        <property type="term" value="P:UDP-N-acetylglucosamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10490:FF:000001">
        <property type="entry name" value="Glutamine--fructose-6-phosphate aminotransferase [isomerizing]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10490:FF:000126">
        <property type="entry name" value="Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10490">
        <property type="entry name" value="Glucose-6-phosphate isomerase like protein, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001484">
        <property type="entry name" value="PRK00331.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937">
        <property type="entry name" value="GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="GLUTAMINE--FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SIS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SIS" evidence="7">
        <location>
            <begin position="35"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="7">
        <location>
            <begin position="206"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4038366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="39863" checksum="76FDCD65FF9237C5" modified="2020-12-02" version="1">MEKEIFEQPESVINTMRGRVDFDNYKVTLGGMVQYVDVIRRCRRLLLIACGTSYHSALATRQLLEELTELPVMVELASDFLDRATPIFRDDVCFFISQSGETADTLNALRYCKERGALCIGITNTVGSTVSRETKCGCHINAGPEIGVASTKAYTSQFLTLVMFGLMVSADRISKMERRKEIIDAMKALPELIKEVLKVDGAIKELAKELYEQKSLLILGRGYNFATCLEGALKVKELTYMHSEGIMSGELKHGPLAMVDKVLPIVMIITKDRLYQKVMNALHEVTARQGRPIILCSKGDEEVKKYAFRHVEVPATVDCLQGILTVIPLQLLSFHVACLRGYDVDCPRNLAKSVTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZD7</accession>
    <name>A0A6S7JZD7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069606</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020371">
        <property type="protein sequence ID" value="CAB4034730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZD7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17569" checksum="E90FDB4972B94FB1" modified="2020-12-02" version="1">MGFHMDEVNILLQMLKKTISRYIRKFRMLGHVDTAVIGRPYACIAMHPHEELVIMEVLLQHIIFYELSYDEALNIAGISTLENRREYLSNNLFNDIVLNDDHKLAKLLPSKAGNRELRKEISFEVLPASTNRFGNSFINFYAKKHYKSDVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4B5</accession>
    <name>A0A6S7K4B5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086646</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026530">
        <property type="protein sequence ID" value="CAB4040255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4B5"/>
    <dbReference type="OrthoDB" id="2157156at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16216" checksum="9BB412CF2EA786FD" modified="2020-12-02" version="1" fragment="single">MSINADKIAQLTTNQEVLQQEVEHLQTSQTSVQQIVTEGQTSSFDFHSCDADIDYYATRYDRDTIQWLLNDFDTWFSGSHESRAYALLGDAAVGKSVMAYFCRHYDSTRRDPRMKTEALLRTCLNKIIFCSDKGPIISSVKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K670</accession>
    <name>A0A6S7K670_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054009</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027641">
        <property type="protein sequence ID" value="CAB4041015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K670"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="136"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="27008" checksum="2CE61F021478CCD1" modified="2020-12-02" version="1" fragment="single">MAAGCVQTSSVGFLKNNLNEWDLDEIFRYKDNECFVFDRKRIRWTDNLEMMKIFTKCAIAQTGIWSSPGGKYRRFTSSNSDLILSWNYERGFLSFQGKTGDCLNELFINICTNKENPPAYYTGPESVTSNTASENTLDKNKSLYDGQNEHKIPSDHGKVNTKNVSLPISQISCDYSTLDELQDFIEQSFQNVMSQNNNSMPSAQVNDCSTPRRIQVDSNSATIEEQFTLFIEKIESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8B5</accession>
    <name>A0A6S7K8B5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A017944</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024918">
        <property type="protein sequence ID" value="CAB4039074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8B5"/>
    <dbReference type="OrthoDB" id="5965589at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="21837" checksum="CB7FA908BBF4BB0E" modified="2020-12-02" version="1">MTLRKASKNAYKSVGILTAYIHKCIVDIKDNQVYFDIVNNVEEACEGLANGKPIGQRIRDMISLQLCCGKKVNCLVSLSKVARNVCQLKPVATEKNDRFEPDDDMPPAELEYKEEEDKKGKPQLSPVFVEAIRSIANVKIHVERVIGCVRQKYTILGHGIAPIDYLKSDNGEPCLLDKIALVSCALVNCCKSVVSVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFD8</accession>
    <name>A0A6S7KFD8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042418</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030565">
        <property type="protein sequence ID" value="CAB4042658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFD8"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="26160" checksum="2630F1BF3BDAB699" modified="2020-12-02" version="1">MKPILVAGVYRPPDTNMATDSKLEDILSQGYFEGKEFYALGDLNINIHDPSAMNHQLVQGLHAMSMTQLVNVTTRPASNTCLDHIWCTTEDNIVRISVPQIGLSDHFPVCFIRKFNGGLCREKSHLTIKYRCFKMFDSAKFIKDLENVPWQKLAAIDTDPDAALDTFERLFNDVINDHAPMKEKRVKLWRQPPWMKPEILSKMKKRDRLLKEAINVSGKVNRNTEEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJX4</accession>
    <name>A0A6S7KJX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000401</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030927">
        <property type="protein sequence ID" value="CAB4042831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJX4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="88" mass="9715" checksum="EA25A4C80CB38CA4" modified="2020-12-02" version="1" fragment="single">MAENNENLNLNAETLQESAKIETNAHGTSDNQPSGGKKAKLINVSTEGNNNHNASKNKQFSRASRIRQSIGNIGLNKKRKNKKKKLNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLX5</accession>
    <name>A0A6S7KLX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A035399</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011469">
        <property type="protein sequence ID" value="CAB4021498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLX5"/>
    <dbReference type="OrthoDB" id="5989714at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010494">
        <property type="term" value="C:cytoplasmic stress granule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045727">
        <property type="term" value="P:positive regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045180">
        <property type="entry name" value="La_dom_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006630">
        <property type="entry name" value="La_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22792:SF132">
        <property type="entry name" value="LA-RELATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22792">
        <property type="entry name" value="LUPUS LA PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05383">
        <property type="entry name" value="La"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00715">
        <property type="entry name" value="LA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50961">
        <property type="entry name" value="HTH_LA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="24"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="81"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="91"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="134"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="197"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="208"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="239"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4021498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="37891" checksum="F6D8D6C458F21A55" modified="2020-12-02" version="1" fragment="single">MSKADSSNTIDEQLPVDPAVETLPTDNGDSSQSIEIPEGKTNEESVENGNSSGGEEKQANETSHTIDLATIAPPPPVVNPWNKSTKNARNSTEKVKPEGTAKESVKEPEVPKQEDKLTDPESWPSLGETGQNTEESKNSTVKKEAVIEVPNSTSEENLKTTPRKKGNRQKWVPLPLDPKGQDGENSNHSPDPDGSFPPRRSPSWRGVSPGGRGGRGRRGAGGLFRGGRGRQRGGGRGSDQQMHYGNNPYQYSNVNPYDGTIYVAQPYAGICYYDNRNYSNMLDEPLLKDYIRRQIEYYFSTENLAKDVYLRQQMDGEGFIPISLIASFYRVQALSQDQDLILQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KPV4</accession>
    <name>A0A6S7KPV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080101</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034410">
        <property type="protein sequence ID" value="CAB4044270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KPV4"/>
    <dbReference type="OrthoDB" id="340605at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017984">
        <property type="entry name" value="Chromo_dom_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023779">
        <property type="entry name" value="Chromodomain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051219">
        <property type="entry name" value="Heterochromatin_chromo-domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22812">
        <property type="entry name" value="CHROMOBOX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00504">
        <property type="entry name" value="CHROMODOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00598">
        <property type="entry name" value="CHROMO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4044270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15988" checksum="D265DA929C474739" modified="2020-12-02" version="1" fragment="single">MKATYWESESIAEKRARREKEAITDDEDMARNLGQSAFPFAGAKNFPRMINIKRKAVKSSRELFEVERVISRRNRRGKVDYYVKWKNYSSLENTWEPEENLNAAAIRAFENPATAEDMIQDARDSLACARHPGTTEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KZ67</accession>
    <name>A0A6S7KZ67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A058901</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018839">
        <property type="protein sequence ID" value="CAB4032953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KZ67"/>
    <dbReference type="OrthoDB" id="5976409at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="181"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="127"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="187"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="23541" checksum="4CA12C7CFD0B361E" modified="2020-12-02" version="1" fragment="single">MPPRPRKQLDSKRIEDSLRANILPLITEQLEAVACRAVWRVRETNIDIARNQIASKRLRLDQVVSSMNGVQFFFSCVTSVMCNAKSAKDDDNETSYTPESYPAIAYFVVYKECATCNEKILFSTIHNEELEAEVSRIRARKSSDSNNEMEKAAKQLFQVVKDHSNNTIQEMLQISNAYCYKNSEGTPSDDDEEDDQPEFVSTHFPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L6U2</accession>
    <name>A0A6S7L6U2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056916</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015308">
        <property type="protein sequence ID" value="CAB4028189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L6U2"/>
    <dbReference type="OrthoDB" id="8067992at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="1">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14404" checksum="C96CBB279D57A1D6" modified="2020-12-02" version="1">MDSGASQHMTSSRDLLMNYQEFWEPEPVVFGDGRSVHALGTGEICITILLGPKEKDKRKSTMTKVLYVPMLAANLFSDRAAAMKGKVVQFIHTLCSIKDSQGKGVVKGRLVGNMHCLDCRGGQLQKDQMTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQJ1</accession>
    <name>A0A6S7LQJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Lipase member K</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A052472</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AB hydrolase superfamily. Lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027166">
        <property type="protein sequence ID" value="CAB4040723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQJ1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1820:FF:000057">
        <property type="entry name" value="Lipase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11005">
        <property type="entry name" value="LYSOSOMAL ACID LIPASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="7">
        <location>
            <begin position="4"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4040723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="28739" checksum="455389548D9288D9" modified="2020-12-02" version="1">MAKYDLPATMDYIERTTEQDQLVYIGHSQGTLIAFAALSTNPELAKKIKLFIALAPIVTIGNIMVPELRILADITTAIDAVAPVIDAPFLPGNIWRTQFIDKGFCNGLTEEKLCYQVAKIFVGDDPTNINYSRIPVFLNGFPSGTSLRNLVHFAQLLVSGKCQKFNYGIIENYVHYGQAKPPQYDVGKIKVPIAIFSGSHDTLSDPADVELLILKLKNLVYIKKLEEFNHVDFVMGLNANIVLYPDIVKLSKEYSNLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSM4</accession>
    <name>A0A6S7LSM4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc finger GIS2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A046190</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028166">
        <property type="protein sequence ID" value="CAB4041349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSM4"/>
    <dbReference type="OrthoDB" id="116216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47103">
        <property type="entry name" value="DNA-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47103:SF8">
        <property type="entry name" value="DNA-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4041349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15258" checksum="614830AB6F90C5A4" modified="2020-12-02" version="1">MKTLAREATEKLSRTTIGSVSSLNAAKTCYSCNGFGHVSRQCPTMNNFKQNNTARPQTKLCYSCQKPGHLAKSCPLANQQPVNTKLQGYDKNWQMDRHVTICYRGNNGHIAKFCNAKLEGGLGSSRDCESPKKNDSKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTU1</accession>
    <name>A0A6S7LTU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067543</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034823">
        <property type="protein sequence ID" value="CAB4044402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTU1"/>
    <dbReference type="OrthoDB" id="5980364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17056" checksum="EACFBC4A560F8CF8" modified="2020-12-02" version="1">MSSIVTSILSSTVGLLWNKARDSTAAILQGGEVPDENIREIVVSELNDIKTNLHGLLRNKDLLSSYKFLQEGVDLLNVSLNKLKLGQSRILNEALELSRAMGKLKINSNKEFESTKERFKDAHKTATVDNPPHILSEVISIQANVYMTSSGEYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D7Z7</accession>
    <name>A0A7D9D7Z7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055782</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000132">
        <property type="protein sequence ID" value="CAB3978682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D7Z7"/>
    <dbReference type="OrthoDB" id="6696428at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02178">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="249"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="178"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="485" mass="55016" checksum="BC562D5541C64219" modified="2020-12-02" version="1">MDSTKSEISMEELLALGSYFSGNIPEDSAETDEEYIVTRPCKKFISSAPQRKRGTAPQWKYSERQREAAELIDLAYDRLRGTPGVAEFSGGTAKTDSQIIQREVEKIKSERDQVVPKKRGRPPKAKVEEEPKIPKKRGRPPKAKVEGEPNIPRKRGRPPKAKVEEEPKIPKKRGRPPKTVESHKTISEPRATVAERLLKQKTVKPKRQSVADRFKAQRLVRPVIPADSVVTKVGPGRYNIEVNLNKRPTRKAPDVPKGVKPWRPVPKPRTVFPRERPIPKPRTKLPKERPVPKPRTRLPIPEALVRVRKPVKQMKETEGQPPVVRVEEHEIDPFGTDLQAPGYRKIETAANGAAVTYSIVSQYMDPLDQLTSSRQVVRSILMNELRKLGGIKYTETLKVRMSKEVGNGKTSKDSMYFKSKTGTVTNHEDIEKTAAFNQQTILNRIETFQNLGSNWIMNIKSHYINIAMYKPLAGSSYMELPKDIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGT7</accession>
    <name>A0A7D9DGT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A067424</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000870">
        <property type="protein sequence ID" value="CAB3985416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGT7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="53"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3985416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12925" checksum="3B8E18919C6058EC" modified="2020-12-02" version="1">MEDKPEQTQAVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAEPEESSSNNMIAYVGVVIALVSLVLAFNQHQRETKKLEPKYIPETVEVTRKADASKLIHLNDTLNIIYIIAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLU9</accession>
    <name>A0A7D9DLU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070866</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001313">
        <property type="protein sequence ID" value="CAB3988369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DLU9"/>
    <dbReference type="OrthoDB" id="5982224at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="17778" checksum="681A35106DF63831" modified="2020-12-02" version="1">MTSKNGVAGVTVIGHDSESRTLVNRYESAGSYKRKINYDISIEQILAIMKQSKNCEQLIKYECYGSILLGHPHGWWVSRQGSPMNYWGGAAVNSRKCACGMTNSCAGGGKCNCDKNDYTWREDSGYLTDKNTLPVTELRFGDTGGSSEKGYHTLGKLRCWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLX5</accession>
    <name>A0A7D9DLX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A038658</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001321">
        <property type="protein sequence ID" value="CAB3988415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DLX5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3988415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11815" checksum="61EFEC732C0E5081" modified="2020-12-02" version="1">MEDKPEQIQAQVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAEPKVPSSNDGLITYIGVAIALVSLVLAYKSHQRETREPEPKHATETVEIPRKADESRLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DQS0</accession>
    <name>A0A7D9DQS0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="8">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">DNA 3'-5' helicase BLM</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A037081</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020001665">
        <property type="protein sequence ID" value="CAB3990466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DQS0"/>
    <dbReference type="OrthoDB" id="5989133at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-0347">Helicase</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00044542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3990466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="476" mass="54126" checksum="803D55B20380704A" modified="2020-12-02" version="1">MASSLSSEVFDKIVKETLREKFSNIDRLSTEQYKALWNYINLSSEPILLVICPLNSLIDSRLKDLVKCRISATCLSNDELDERGILAGKYSIVFANPESLIMNAKWHEMLSTEIYQNNLFGVVTDEAHVIPKWGQNDKKEKRLAFRECFGRLGELRSILPGAPVLALTATVTKKIKKNVTESLSLKKDMVLIDANPNWPNIYLSVKKISNDLNSSFQWLVEKLKKEMNTMDRVLIYCKTIKDCGRIFTYFKCKLGSDAYYPAGTEQISINMLVGMYHHSTLQKHKERIINSLHDMQGVCRIIIATNALGMGVNFRNIRTVIHYGPPRQMDDFIQEIGSCLQPGQCSVIIETDLDFLISSSPEERSRVVTAQQKRSLRELLLEMKQHIQLNDKSYYLSADSSTGFTASLIDLVVKNYVFDDIDIPEIDTYGSEADGELLTMYNLEYGGEYIQDTEKLSDYTSDIDVTDLSVMSDIDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DW88</accession>
    <name>A0A7D9DW88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A019297</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002428">
        <property type="protein sequence ID" value="CAB3994268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DW88"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="247"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="410"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="258"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="416"/>
            <end position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3994268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="896" mass="102170" checksum="BDB0D915AEFECFEE" modified="2020-12-02" version="1">MAAQNIQPMPAFEPRSDPTSTSARWTRWLERFNTYLLAADIKDDARKRALLLYQAGPEVHEIFKTLEEGETKDFKSAVKALTEYFEPEKNVIYRTYVFRQATQGKEESIDEFHTRLRGLAKYCEFTNIDFEIKMQIVTNGTSSRLRKKALQDPKYSLANMLIDGRKYETSSAQAVGIEEQFKTRENINAMAMTTPTEKKCYYCGFKYPHDNQPCPAKSAICNHCGIKGHFAKVCRTRGKSFASKGNLEKLQTQGFTSPDKRRQSRWDENKQRKQQAKAVGISQSEPNTESSEEKDYVYTVSQETREQTHATDVLFLVDTGATVDIIDSTTYAKLKRKSSLRKSSTKIYAYGFHTPLPLNGQFQATLESKKRYTVSQMYVIDGAGGNLLSAKTAQDLALVQLINTISGFPEQDKQTKTNQNNTHSTACETNPEINTSVPQSKDPKIQEIINKYNDVKPVMQRQRRIPYHVRKDVSKELKKLEEQDIVEKVANQPTPWISPIVVTPKKDGGIRLCVDMREANQAIERERHTMPTLQDFKAEKRSLVIVDGSPYGISAILAQKEHHSQQYKILSYASRALSPVETRYSQTDIEGLSLVWGIEHFRMFLIGSEFDVITDHKALESIFNNPRSRPPARIERWMMRLQPFNFKVIYRKGSLNEADYLSRHPAVIEREQITSTTAEEYVNYVTNCSVPKSMTLDEIKKATHNDPVLQKVKKCLKEGKWDENNPDLKPFRLCADELTYNASAGILLKNTRLVIPTTLQERATKLGHIGHQGIEKTKSLLREKIWYPNMDKRVKEMVDKCIPCQAVGHGNNPEPMKITPTEDKPWTSVAIDFYGPVPRTGQYLLVVIDTYSKFPEVEIVNSTEAKTCIPKLDTIFARYGIPSKIKTDNGPPFNGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DWN8</accession>
    <name>A0A7D9DWN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A059637</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002472">
        <property type="protein sequence ID" value="CAB3994473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5812172at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033314">
        <property type="term" value="P:mitotic DNA replication checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007095">
        <property type="term" value="P:mitotic G2 DNA damage checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030174">
        <property type="term" value="P:regulation of DNA-templated DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010212">
        <property type="term" value="P:response to ionizing radiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026153">
        <property type="entry name" value="Treslin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053919">
        <property type="entry name" value="Treslin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053920">
        <property type="entry name" value="Treslin_STD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21556">
        <property type="entry name" value="TRESLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21556:SF2">
        <property type="entry name" value="TRESLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21854">
        <property type="entry name" value="Treslin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21855">
        <property type="entry name" value="Treslin_STD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Treslin N-terminal" evidence="2">
        <location>
            <begin position="40"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="Treslin STD" evidence="3">
        <location>
            <begin position="714"/>
            <end position="863"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="358"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="575"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="629"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="869"/>
            <end position="922"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="936"/>
            <end position="1130"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1169"/>
            <end position="1286"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1397"/>
            <end position="1430"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1455"/>
            <end position="1564"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1603"/>
            <end position="1643"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="358"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="377"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="393"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="415"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="587"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="937"/>
            <end position="971"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1071"/>
            <end position="1092"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1095"/>
            <end position="1107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1215"/>
            <end position="1226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1238"/>
            <end position="1258"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1264"/>
            <end position="1286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1470"/>
            <end position="1483"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1509"/>
            <end position="1519"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1530"/>
            <end position="1545"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1555"/>
            <end position="1564"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1616"/>
            <end position="1626"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1634"/>
            <end position="1643"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3994473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1643" mass="182641" checksum="E4D5E7D05A4A6D1D" modified="2020-12-02" version="1">MAEKFEQGGNFQIVFLIDVFVEEQNICEQDLEDIFNLKSRAISLCVLRLLLHFNSLVECGNFAPLKWGFKFYNSNVLNFEYKRRRFYELNSGSFEQFEEEMRQRFTNACSGQNSAKTAGVKSLSCCLTEILHDFPWVTPDISSPSRSAKYDQFNSQGNRPRNYLFVVSDCPLSDGDMCRFLGRNESSFDAEVVFKEIFSTALYEEFHSKCGLLLFWIDSGLWCVAPEKLKTSVEDWKGYSLISCVTKQLCGNIVPISSLVQDTRNIHLPHLGNSTLSPKGFKLKANTLAEVRVMTAAFKFSFGKIVEAFLSGKDLISEAVINDVKLIPNSNGLLKGILHFQEKRVCSVVLSHILQKKSTSTPGECSSNIETPGSDDIDNHHHDNVNVEKPSSDDNSSLAASQQTLPDSDPKTNDEVNSLTSTNSNIELKAERESLENCFVIKGVIASADVSPSWMHPTKLYSCFSGETLNSREVDNTEDAGLFQQMLSLIGSKSLSMVVEYQDPDTGTHVTGLLQPITLLCAILSMVKKDKLLLVEKALLRHRSHGYILVPCDVTSDEGDSEMLPFDLRENKEELGNGEGISSTLSRPKDGNDSEKGITHSYICSFQKKKLKEPESGKELRLKLKDYYSKKESKSNSEKTAAQAPALTRGKLLQETSQKNITSKLNESEAQNKIVDSAMETEDSTATLSNLDSEQTDAMDEDLPDMSVIQSVDDLKTKLENEYQRCLNQEQSVTVYVSRAFQMILHFKHSGQLKDVDEIDSLLKSTVLRDDKKSREISDAEKNESDKERVVLEYKLQVYLRLEFADKIGVVDEEKIADEITSVLRAISFQKDPAYLSSFLKNSVIPRYADNLSSLLCQVYDGLMQRPPKEILSPSQVTSEEDTPLKSRKTLSSSKKAKSVEEAHSESSQSSRTLVRRHSVMGVPAKRREIVIPVKGKSNKTRKKIGSAGKKSGKKHTMKKKPVTPVKKVRRNLFEGNGSKSSPKKHSKIASSKSERGNLTRRHSIAAFSKSNKVADTPMGKQVSQRMLRRQEWARRRSKTVTDVTVVGESPEKDDAILPRKSPRRKAATFYSASQRAPSTAKTTNKNFSTAECTAEDKTDSVPDNKSGRTLHRAKSMNIDTGFDSVSSPRKKYTKLLSTDGSSSPKLDKDDCFAEVFLETGDGNERTILSAFTSDRQGDVPSVQHSPRDTCDDPNLPLSTSTKPSRKHNKATEFPSSVTPKKSTSPLTAVHSRRSVSRRSNSSPSLSTTPPLKPSKSPLITHKSFPTTSPVLFKSPKTTPKSSPINFSPDQIFDIAIPLVPVKSPLVRPTKTDSTKNSRLKTSPLRKSDIKVMASPSECVSASSEVVVGVVGTESESVGLKSENVVNDSESVVAVSPLLNRKRSSISSAKFLRSKTSLNFGSSPRSRGVDSDSTTYDVTNQEGDFPTTSNVEVQRPGVEFDNEVLDSAVAPEQTEVFKSPVTTKRKRIGSTRTGNVSPLNQILKQRKNNRNTPPGTPRGETYKLERTENSNSCKGETQLKQISIRRKQKIKSETADAEETDRRQLDSSPFYVSDDNLSPDKNNLNLSAQQQRNTKLVSSPCNLKPHFTPMSLSADSLKHLQESPVLLGSSPQSSDLRTRKWSERKSPLSTSQHSLRKRIRHDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E1C9</accession>
    <name>A0A7D9E1C9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003543">
        <property type="protein sequence ID" value="CAB3999236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E1C9"/>
    <dbReference type="OrthoDB" id="6597828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="30961" checksum="002562CD74EF3E2A" modified="2020-12-02" version="1">MSNATKRKAENEKILQKEANTCKRITSFFSKATGECNQSHIPNRVPNSENVQEADISEWVPSSEAVQEEFTSDTPMGAESLSTCDQFQDKDSVGNCTTVNSDTSTISSVVPESSLGPSLENDETCRETCQESNQRCQVYLYRGYPLNINAIVKKAGPGVLHLYKEKSKTRSANQEKNKTRSFVKCLVCAEYEEEAKRFSTNHQVYLVYGVRCDGKKKMQDVVDHLLGAAHDAAIKLKNLSTQWATKAPNHPWLRTLKNHDSSVITTLTHMASITTANC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E591</accession>
    <name>A0A7D9E591_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="20">Voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">PACLA_8A037202</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="20">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 17">Membrane</location>
            <topology evidence="1 17">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="17">Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004205">
        <property type="protein sequence ID" value="CAB4001907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="431720at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098793">
        <property type="term" value="C:presynapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005891">
        <property type="term" value="C:voltage-gated calcium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008331">
        <property type="term" value="F:high voltage-gated calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098703">
        <property type="term" value="P:calcium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000411">
        <property type="entry name" value="U4/U6 small nuclear ribonucleoprotein Prp4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:001300">
        <property type="entry name" value="U4/U6 small nuclear ribonucleoprotein Prp4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000007">
        <property type="entry name" value="Voltage-dependent L-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000001">
        <property type="entry name" value="Voltage-dependent L-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000059">
        <property type="entry name" value="Voltage-dependent N-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000068">
        <property type="entry name" value="Voltage-dependent N-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000011">
        <property type="entry name" value="Voltage-dependent N-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000009">
        <property type="entry name" value="Voltage-dependent T-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000117">
        <property type="entry name" value="Voltage-gated Ca2+ channel, alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2500">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.280.110">
        <property type="entry name" value="Pre-mRNA processing factor 4 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031649">
        <property type="entry name" value="GPHH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014906">
        <property type="entry name" value="PRP4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036285">
        <property type="entry name" value="PRP4-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014873">
        <property type="entry name" value="VDCC_a1su_IQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050599">
        <property type="entry name" value="VDCC_alpha-1_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002077">
        <property type="entry name" value="VDCCAlpha1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45628">
        <property type="entry name" value="VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45628:SF7">
        <property type="entry name" value="VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08763">
        <property type="entry name" value="Ca_chan_IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16905">
        <property type="entry name" value="GPHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08799">
        <property type="entry name" value="PRP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00167">
        <property type="entry name" value="CACHANNEL"/>
    </dbReference>
    <dbReference type="SMART" id="SM01062">
        <property type="entry name" value="Ca_chan_IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00500">
        <property type="entry name" value="SFM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158230">
        <property type="entry name" value="PRP4-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 17" id="KW-0106">Calcium</keyword>
    <keyword evidence="6 17" id="KW-0107">Calcium channel</keyword>
    <keyword evidence="4 17" id="KW-0109">Calcium transport</keyword>
    <keyword evidence="15" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="16" id="KW-0407">Ion channel</keyword>
    <keyword evidence="13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="14 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0677">Repeat</keyword>
    <keyword evidence="7 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 19" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="11 17" id="KW-0851">Voltage-gated channel</keyword>
    <keyword evidence="5" id="KW-0853">WD repeat</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="491"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="530"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="556"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="622"/>
            <end position="645"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="744"/>
            <end position="765"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="883"/>
            <end position="901"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="951"/>
            <end position="975"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1004"/>
            <end position="1026"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1084"/>
            <end position="1106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1285"/>
            <end position="1303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1323"/>
            <end position="1343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1418"/>
            <end position="1440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1537"/>
            <end position="1561"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1617"/>
            <end position="1637"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1649"/>
            <end position="1668"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1741"/>
            <end position="1759"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="1830"/>
            <end position="1854"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="31"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="1118"/>
            <end position="1140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="1159"/>
            <end position="1191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="1210"/>
            <end position="1240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="18">
        <location>
            <begin position="48"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="18">
        <location>
            <begin position="1122"/>
            <end position="1140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="18">
        <location>
            <begin position="1221"/>
            <end position="1234"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="2029"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU003808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="CAB4001907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2029" mass="233303" checksum="596306902A19E42F" modified="2020-12-02" version="1" fragment="single">MSDDENDVPAIKKQRIYFGSLEETIRELEKEHLKKSENQQNINVSDGQRLELSEDRNTERNQKLLADFEKRKKARTVVVPTNDAEVKARLRELEQPICLFGEGPAERRDRLRKLVAEFGGGLEKEQESDVKQEKKDEEVQEVWYHEGPPELKVSRMWIANFSLPRANERLKKARVLQARPDAEKAARTQELHKKLRALVNSCSQIGDDRPLSYCQFSPDSKMLATCSWSGLCKLWSVPDCSLIRTLRGHNSRVGGIVFHPQATVSLETSAPCMASCGADGDVRLWNMESETPIANIEGHDKRVSRIAYHPSGRFLATCCFDYSWRLWDLDQLKEVLHQEGHSREVYHIAFHPDGSLTGTCGLDARGLVWDLRTGQCVMPLDGHLQKVLAIDFAPNGNHVATGSEDQKIMIWDLRKRKAIYTIPAHTNLISFVKFHDQYLLSGSYDCKVKVWTHPGWIPLKTLAGHEQKVSCVDISSGNILFILYTFYPKTLQIDIILLAVASNCVVLALDAPLPSNDKSAISDELEKSEIFFLVIFTIEAILKIVALGFVLHPGSYLRNGWNILDFIVVITGYISLRQFGNDSFGDVKPLRAVRVLRPLKLVSGTPSLQVVMKSIMRAMVPLLQVLILTMFVIVIYATVGLSFLVDKFHATCYNNITDEIVPVGETVQPCDYKSNGMFTGRQCNSSNNEICRQVWAGPNGGISTFDNILLAILTVSQCITMEGWTDVMYSTFYATDSESYFYTIYYVSLILIGSFFMLNLVLGVLSGEFAKERERVETRRNFFKLRREQKVDREVEQYLEWISRAEEIIVEDLVTRQNEGETDSNQNRPIPPDFVFNPISILAVDGGQVPRLNLAERHKRFPRFRLKERLMRIRVRRLVKHEGFFWAVVIIVLLNTISLATEHYNQQEWMTEFQDKAEIMFLSIFVMEMLLKIYGLGPSTYFRSTFNTFDFVVIIFGLFELIIQKPLGISVLRCLRLLRIFKMTSYWSSLRNLVRSLVSSIKSILSLLFLLFLFVVIFALLGMQFFGGKFVSDTEQPRTNFDDFPNAMLAVFQILTGEDWNSVMYHGIDAYGGAKDPKGLACGLYFVLLVIIGNYTLLNVFLAIAVDNLANAHVLTEDEENERLKREARNEQLEGSERKTSHWQEIGNMTKTLALVKSWTSDPPTEETHCDANGEDGVDGSSTSNGRTKKELTKNLMKNINKYRKAIGDDQDVEAQQPDPHQSHREGATRRRSEGQTVTRALKGRKSKVRKLKKKVPIIRVKSLFLFGPENKFRRVCHYIVNLRHFDNFMLVVIICSSILLAVEDPVDEYSERNKVIRYFDYIFTSIFAFEVFVKLIDLGAVLHPGSYFRSKWNFIDALVVCCNIASLVLSQTQSNVSGQYFVKVLRVLRVFRPLKMMNKLKKLEAVFRCMWYSFKNVANILLITVLFLFIFAVIGVQLFQGKFFYCTDPSKMFEDECKGQYFEYNQGADNIDLTNQVKVKERLWKLRDFHFNNVFHAMLTLYTSATGEGWPSAMQHTMDVTALNQGPIRNYSVENALFYISFVVVFSFFFLNIFVALVILTFQEQGEKELVNSELDRNQRDCISFVIRAKPSETFMPADKKTWSYKVWLVVVSKPFELFIMALIILNTIVLMMEYYDQPDDYMNMCNYFNAALTFLFTMEAALKLFAFKLSYFRDSWNVFDFIVVVGSILDTSLTFGKTYDLPFDPSMFRLFRAARLIKILKQGAGIRVLLWTFLQSFKALPYVTLLIFLVFFIYAVIGMQIFGKIKLDDSTQINKYNNFQDIARSLLLLFRSSTGENWQEIMLSCSDGAMCDERANPQSKTCGSTTWAIAYFCTFIFLCMFFMLNLFVAVIMDNFEYLTRDQSILGPHHLDEFVQIWSAYDPAATGEIHYSKVYEMMTRLSPPVGFGKKCPKMVAYKRLIKMNMPLDENETIQFTTTLFALVRTSLQIRMTGNMNANDTKLRKMITQDWPNIMPRVLDKMIPKQSVLSCHQMTVGKIYCAKLMVENYRQNKRRKQFDILDDDEFRRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E623</accession>
    <name>A0A7D9E623_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003928">
        <property type="protein sequence ID" value="CAB4000795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E623"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="469" mass="53833" checksum="A889CE3B2CEC5BAF" modified="2020-12-02" version="1">MNNTLPTRKNLSRWGISSSSDCSFCLHPESLLHVVPGCQHYLERFTWRHDCILKFLAKTFQSLNECKLLVDLPGFESPSIITDIDTKPLHPKNKILLYSRYLLSKLSWHFTVSSVSKTWVTENIDSKVNSYIRKWHDIPISGTLSTVFLTRNKFGLSICPPSVKFIQCQTVLRKALKTSPNEAINDLWKATSNSKNIQYDVYNFTMQVLKDIRSGQEDKLHTQLTCQGSFFTNITKFSLSQLTKIWSACHSNLRKNIFNFTVRYINNSLPTRQKLARWGLSPTSDCSRCLAPETLLHAVSGCQSYLERFTWKHDSVLNFLATSLQTVSGSHLYVDLPAYKSPSIITGDTYRPDLLLSTSTGTLYIVELTVGFESNLQKNVERKNSKYKELIRGQNEHFNSVKFVNLSISSLGVFSKECSTFIEMLNDFGFQKKHQNYCLGRMTTIAIRTTYYIFCCRNKEWMNPELLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBT3</accession>
    <name>A0A7D9EBT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005564">
        <property type="protein sequence ID" value="CAB4006654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBT3"/>
    <dbReference type="OrthoDB" id="6142245at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="683" mass="77725" checksum="2DD5C4DAB116F125" modified="2020-12-02" version="1">MNDISSSSLGVVITGEDGAEESSDGAGEEGIPERDGASTELDESSRLWTTFQRCVEATRKEYKPWTKPKNPTDSRQQLTADWPTTLRECAAQGTYSASGHFCVTTFRSLEDVQLETTAVKLTSYTGEHLPTSKDLNLIKLVMNVKLSKRENTTAKSVNDMASQFPKVFQGLGCFKKPYHIQVDPKVTPVVSTLKSQPVALRDRLKQSVDEMEADGVIEKVDQFCCSGATVFSKLDANYGYWQVALDDESQLLTTFNTEFDRYCYKRMSFGIKSAQEVFQKRMSQLFGDFEGVETDVDDILVWGTTTEEHDQRLKNSLQRCEEINLTLNQSKCEFGTTEVVYIGHKLTAQGVKPDESKVDAINKMPSPTCKKDAERLLGMGSRQEESFQKIKEILTAAPVLVYYDDCKPVTITCDASKSDLGAVLLQDSKPVAYASRALTDAETRYAQIEKELLAVLFGFERFIQYTFARPVEVEKDHKPLEAITKKPLSMAPPRLQRMLLRLQRYDFIVKYKPGKEIVFEDTLSRTYVPNSEPDESHMEDEVENIHSVLHRIPVLTDNYKLEKIREETSKDPTMMVLLTVIRRGWPQFRQQTPVEIHEFWNYQDEMSEIEGVIMKGDRIVTPTVLRSQMLARVHDSHMGIEKCRGRARDIIFWPKMNEQINDLISKCDICQEHQSSNTKRATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EQH2</accession>
    <name>A0A7D9EQH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008713">
        <property type="protein sequence ID" value="CAB4015432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EQH2"/>
    <dbReference type="OrthoDB" id="5984990at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15101" checksum="6B584C9BE1A413C0" modified="2020-12-02" version="1">MWKISNMATFRGMHAFSRKACKIFDFKPNGNVLKSRSQLAQILGSSVRANGSVSIVSVSPKTRQLLNTINRSNKWNTSLFENITRSSSSVVCLLSNGNTSLLATLCSALDELSTEGDEDSTNRKKRIYLAGRLNDDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8X0</accession>
    <name>A0A7D9H8X0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013741</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000127">
        <property type="protein sequence ID" value="CAB3978586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8X0"/>
    <dbReference type="OrthoDB" id="5972940at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="61"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="229"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="313"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="385"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="571"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="855"/>
            <end position="901"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="925"/>
            <end position="956"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="991"/>
            <end position="1016"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1035"/>
            <end position="1060"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="149"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="61"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="232"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="319"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="385"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="408"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="434"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="481"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="520"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="859"/>
            <end position="869"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="941"/>
            <end position="951"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1072" mass="125697" checksum="4E391523ACD2B50B" modified="2020-12-02" version="1">MANARAVEEVPKSGKTRTKTSIFWSTVPEKEQFRNVQVPGVALDRFKDVKNNTQAQKYVQVVQKSKSDSAISNTRSDPLTVNKQGKTGHKFAVKQNDLSGKRKDASSIFKGASSDQLANISTLSENSKARRASLKNLNVEDKKRVANLIKELAKTGEERELALERLQEERVSFDEQLGTVQEEQTALKQEREALKQRLEKSEKLLKKYESELKDVKIEKEEQEKILKKKFQAQPQSTQTSPLIQNFSTDGTTKSGRFKSEQDDIQPRGIKKMRSTQAYIGDSESNDRDGRRRWSTPQVPVYSNSLFDVKVSNVEHEQNSETPSVSEEYQRSSVAESGGLHELYLREYSLQLRLQEQQIEIQRQQVQLQQQLQLLQQQQQQGRRQQQGQQQQQQHQPELAKQQQRHQEQNNQQQGLTQQREKHNEQHSYQQNQEQHVHNQHEPLEYKQKHSNADHKQQHKKQEWRKQSNQQVLHSREHQLQPLDQPQSWHQQEPQYPSEQKNEDIFTQSSPTQQTNLLQKRTPERKGHKIEPKHRADTDIPHEHASHSPRQRHEHDHQQRVVENLRHGHEHEDVLDGQNGEPQTKDRSYTPSGSPSHRHYHHSGRDVEKNRFAEEHQTNRNKGQYGTDSTSFEQRYVSKRKLSRKLDRANYAKQIDLNNNEYFQPKSHSQQKNRYDINDHLVHGHYPQEYLSKSYSETDDDVEQHHFSSERPCHCGYYHNHTRQQHATLDYDQAIPNHSHSKGIPQHGLKQKSPHVIIENPHQKGEPLHAQVYQQPIRHQHSPDRTNSYHQRLLYDLKPIRVPENRPPLGHHHHHLHKGEYHHRPDIREEHHGAPHYATHKHEGESEYEAAFYQPSQEIGNKHQPTERRTYTRHQSRSPTGVLLSPQVGKTEHDYLPSDGLQYSRSQMNRDRSKYLLDDYIYNHQTAGQDNYEPRATSNKHSTNRKISRKSHGNTEIEGEENGHLALPCMTSQQIQYEDENPNPSYSLYKPNIPHPTREQPEYPRIPPGHNNDQYSRKRYPNSLVEIVEDLEIHSGYEERYSEETGMYSTEEPGYDSDEEESTVLDNIFFLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCJ2</accession>
    <name>A0A7D9HCJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Glia maturation factor beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A017460</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the actin-binding proteins ADF family. GMF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000270">
        <property type="protein sequence ID" value="CAB3980223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCJ2"/>
    <dbReference type="OrthoDB" id="3919494at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030864">
        <property type="term" value="C:cortical actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071933">
        <property type="term" value="F:Arp2/3 complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071846">
        <property type="term" value="P:actin filament debranching"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034316">
        <property type="term" value="P:negative regulation of Arp2/3 complex-mediated actin nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11283">
        <property type="entry name" value="ADF_GMF-beta_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.20.10:FF:000026">
        <property type="entry name" value="Glia maturation factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.20.10">
        <property type="entry name" value="Severin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002108">
        <property type="entry name" value="ADF-H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029006">
        <property type="entry name" value="ADF-H/Gelsolin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011171">
        <property type="entry name" value="GMF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11249:SF2">
        <property type="entry name" value="GLIA MATURATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11249">
        <property type="entry name" value="GLIAL FACTOR NATURATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00241">
        <property type="entry name" value="Cofilin_ADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001788">
        <property type="entry name" value="GMF-beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00102">
        <property type="entry name" value="ADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55753">
        <property type="entry name" value="Actin depolymerizing proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51263">
        <property type="entry name" value="ADF_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3980223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16738" checksum="DA0B084B1F59B5EA" modified="2020-12-02" version="1">MSELVICDIDEDLLKKIKKFKMRKEKNNAAIIMKINREKHLIVEDEELEDITIDEFREALPTTQPSYSLVSYVHKHDDGRTSFPYFFLYVAPQGCKPELQMMYAGSKLRLIKEAQATKDFEVRSADEIDEEWLKEKLRFFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCM3</accession>
    <name>A0A7D9HCM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056394</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000046">
        <property type="protein sequence ID" value="CAB3977420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCM3"/>
    <dbReference type="OrthoDB" id="18087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="577" mass="67297" checksum="8486AD490EC91133" modified="2020-12-02" version="1">MSSRDPVWMTPLLKSMIRAKSRISELNKDRLKEINKRISEVISENRRKCKTTPLGSKAWWKMTDALSQRKKQDRAILDNTRLSDLNDYFAKLCSDDTYVEPTPLRIESEVETPRVSELQVWNILKALTKTATGPDQIPYWIWKEHKEILTPVITRVWNLSLSTQSWPSAWKRSNVNPLAKVEMPNENQDYRGISITPVIARAFERIVYDTHVRDVVENNLSRTQFAYRAGGNCTCALLAMQHRINSYMDDPDCRAVRLFTMDFSKAFDSVKHDLLASKLKAFPLNPYIINWYLSFLKDRKQRICYNGYEGEWKCVNRGTTQGSVSGPHLFNIFLNDLNLELDGLDILFKYADDSNIVAPVWKERDCADFLVSQFLDWTSRNKMICNPGKCKEMTIYKQGNQEYFSPIAMIPMCKAVKVMGVTFQCDGKFGEHVKNKLIKANKCLYILRSLRKEGYSQQEIDLLFDTLVLPNITYALSVYAASKSDLTPIEVFLKRCYKRKYTSKPVSVYKLLEKQDRTIFNRVSKLWQHPLLSLMPHAKETGYNLRKRRSHRPKVRTERFKNVFVNRLVYNYDLVID</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD43</accession>
    <name>A0A7D9HD43_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058017</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000201">
        <property type="protein sequence ID" value="CAB3979470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD43"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="22240" checksum="86DC49E4BCAE8916" modified="2020-12-02" version="1">MVVQSLADSASGGHVPVGQDHVGAVKKPFHPFPNLIPHHLSAMATNPGLRQDCKSYRPCQVKCFQCEKSGHIRRNCKARGEDRTRPPVAHGTDVGSVEQEPTSITTPKAPSLRKGNVTLHVAGKDLRLSPPTSIPAAANLTKLDCLGVTTIKIGHVTKPAVRVLVVRELSVSAILGLDVLHDYERMSVNRKNQTLVLGGHLIKLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HJ30</accession>
    <name>A0A7D9HJ30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">PRDM9 zinc finger domain, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A017870</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be involved in transcriptional regulation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the krueppel C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000696">
        <property type="protein sequence ID" value="CAB3984101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HJ30"/>
    <dbReference type="OrthoDB" id="40579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000100">
        <property type="entry name" value="Zinc finger 45-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000446">
        <property type="entry name" value="Zinc finger protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000478">
        <property type="entry name" value="Zinc finger protein 133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000512">
        <property type="entry name" value="zinc finger protein 197 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000226">
        <property type="entry name" value="Zinc finger protein 236 variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000340">
        <property type="entry name" value="zinc finger protein 473 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000180">
        <property type="entry name" value="Zinc finger protein 689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000624">
        <property type="entry name" value="zinc finger protein 697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050636">
        <property type="entry name" value="C2H2-ZF_domain-containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47772:SF15">
        <property type="entry name" value="REDUCED EXPRESSION 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47772">
        <property type="entry name" value="ZINC FINGER PROTEIN 200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13894">
        <property type="entry name" value="zf-C2H2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="10"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="10" id="KW-0804">Transcription</keyword>
    <keyword evidence="8" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="6" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="12">
        <location>
            <begin position="8"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3984101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="46995" checksum="3ABD515445C8F786" modified="2020-12-02" version="1">MGKECKTKPAKSKERKAKKIVQPKPKTDAEKKYICHACSKGFDRPSHLARHERTHSGERPFSCESCDKTFKDKSHLVSHKETHNSERNFTCSDCGKAFQTSSTLHSHRKTHAEEKEKARKHQCETCLKVFSSKCDLTRHERVHTNERPYKCEFCDKSFKMMSHMKRHVRIHTNERPYQCPDCKKRFKQSVALVQHQRIHSGDRPHACTYCSKSFTQVTHLINHERTHTGETPFVCQVCHHGFKQASGLLSHARTHENIKAYECEFCSKSFATEKGLLNHETVHSEEKRHKCLQCKRTFAREANLALHMKTHKATDANETMPYACGTCKRHFETEVLLLAHKALCMVGKPFRFMAYDDMFPQSNQVANLGEPSGACAAEVVVTIDSSGDIDSVEISALVNENEQSMTTDTTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQL9</accession>
    <name>A0A7D9HQL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A026525</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the canopy family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001005">
        <property type="protein sequence ID" value="CAB3986364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQL9"/>
    <dbReference type="OrthoDB" id="6020060at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021852">
        <property type="entry name" value="DUF3456"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15382:SF8">
        <property type="entry name" value="CANOPY B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15382">
        <property type="entry name" value="CTG4A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11938">
        <property type="entry name" value="DUF3456"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="192"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="192"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="203"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="248"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3986364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="30275" checksum="9B5A4EBE222648B5" modified="2020-12-02" version="1">MKLLVYLIVMSIGRYECNKIDAEENLPTLCHVCKHTVDEFLNELFASNSKDILKLGHVLQSEERQKKIVYEKSELRLIEALENTCKNLRNYKVHKDRHNHLRYSKDESATFQTLNELRERGVKVDLGFPDEMWDTPDAEVVRLKTQCENMVEEYEEDLSEWYYNHQANNLHDWLCRSRVLRGKQKNKDCLQDLSGAKENEKKNKVKSKRKAHSGKKVTDKTKGSNENNDISGKNNEFKNGKKNSSLKRNGDEISERGEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I160</accession>
    <name>A0A7D9I160_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gastrula zinc finger</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015302</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002591">
        <property type="protein sequence ID" value="CAB3995060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I160"/>
    <dbReference type="OrthoDB" id="5976830at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="259"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="147"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="302"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1068" mass="122906" checksum="37DFF59C416048BF" modified="2020-12-02" version="1">MANNFDMNDMTVEQLMALSEIIDDSDYKGNLEDEVNKISEDKFYRVAPKDKGENIFAEEKLFIDEGDRATDPKRPRRLPLNYKGKRGIMPTWKYSERQKAKALLVEEAYQSLLSRGVEGLPPTMGGRWRTDDPQVNAEMKRLENLRNPKRPRGRPPKVKADGEVTPKRRGRPPKAAVAETKEVKVAKRRGRPPKAKVVEAKEVTVPKRRGRPPKARRQTVAERFISQGRIKLSVPTNSAITQVGPNKFTVTVDLSKKPTREAPEVPKGVTPWKPVPKPRTVLPKGRPVPKPRTKIPKERPVPKPRTKKPVPPPKLRKPARVTREVVEQPVVVTPEEHEIDPFGTYLDKPSYRKIETAANGAAVTYSITPNYMDPLDQMTASRQVVRGILVNELKRMGGLKYTETIKVRMSKEIGNDKTKKDSIYFKSKTGTATNFEDIESTAAQNQLTILSRIETFQNLGSNWIILNIESHHVNIAMYKPLKGSSYMKLPADISNPKCGLINMKNEDNKCFMWSHVRHVRPKVRRATTITRQDVKFSENLDYEGIDFPVKISDIDKIERRNCISISVFGYKGKKQFYPIRNSKTKYDEHMELLLLGDGNGNNHYVLIKDINRMLYSVSGYEHKKHFCLYCLHSCKSEELLKKHKETCLEVNGTQATKLPSKGTKIKFKNHRNSMPAPFVIYADFESILVPEERKVDPESSEEKSTTDLYQTHKACSFGLKTVCHYDDQYSGEYISYVGEDATNVFLKTVLKESIRCREMVNKIFKKKMVITPEQEAEFWMTRNCSICGNDLGDDRVRDHDHVTGMYRGAAHNMCNLKYRITWKVPVVFHNLRGYDSHLIMQEIGKFKMNINVVPNNMEKYISFSLGKSLVFIDSIQFMASSLEALVSNLSPEDFRIVGKRWTGEDFKLVTQKGIFPYEYLDDISKLNVEGLPSRDKFYSSLYESEVKEEDYQRALKVWDHFKMKTMRDYHDLYLETDVLLLADVFENFRRTCLENYKLDPAHYISAPSLSWDAFLKQSDEEIELVSDMDMFQFFEKGMRGGGSVRRKTAGTTQTIQKIHHTTQLIIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I1A8</accession>
    <name>A0A7D9I1A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017016</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002772">
        <property type="protein sequence ID" value="CAB3995982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I1A8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17548" checksum="4E9F8209811A466A" modified="2020-12-02" version="1">MQKLYVIEKNDGIDYQTLVSLVHKFSLQTQLDKTGIAKETLHELCSLASTESDRKLIKFAVCEASRYSNTKAKEHLGIQEMSVLRCLGLYDCMSGSESDCESTASTNQNDSQIEWLSEDSDDESDTAPVHNHVDPDDGLNKQPKDLPPTSEHLLLML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3A1</accession>
    <name>A0A7D9I3A1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038494</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002798">
        <property type="protein sequence ID" value="CAB3996099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3A1"/>
    <dbReference type="OrthoDB" id="6373930at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF14">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="379" mass="42479" checksum="346A77EA05F6D101" modified="2020-12-02" version="1">MTTTTNSTGYAPRRGLLFNGNKSKYELWEVKFLGYMLLQKLYKVFVWDASEKDPPDASTQADAFAELVQCLDDRSLSLVIQDARDDGRKALEVLRQHYHGKGKPHIISPYTELTSLKKEENEPIVNYVIRAESFATALRNAEEDISDALLIAMVLKGLPREYDTFATVVAQREKQMTFAEFKSALRSHKESAKTHGGKAASRENIMLTKQKFDGNCFKCGRKGHKSAECWSKTLERWCSNCKSKTHKTKNCRKKKDAAKTAAEKTTSSENNEHTFAFTSKDTINKSGINNKSNSSLLVDTGATSHIINDKSEFVDFDKEFNPSAHVIELADGSKANVVLGKGNAKVKLYDVNGNACEVMLNSALYVPSYDQNIFHCMLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I5W3</accession>
    <name>A0A7D9I5W3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085572</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003373">
        <property type="protein sequence ID" value="CAB3998507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I5W3"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="395" mass="44574" checksum="61731C07DB1615FC" modified="2020-12-02" version="1">MPVNEETPSLDNLCQKFNNAFVNISSNFSPLDHCPNSPSIHVPDELLVSSNEVFCDLSHIKSRSAIGPDGIPNRVLKDFAFELAPVLAVIYNSSMKQGIFPEQLKASIAIPLPKCHPPKEINSDLRPISLTNQVAKIMEGFTLKRLSDDLLPMLDQFQFAGFDLVDHSVLLSELNCFGVNPVLQNWVSAFLYKRSQCVRIGSSNSEYRYLIGGIPQGMKLGPLLFAVLVNSLINSWHYRVKFVDDLTSLEIIPRNSPSLTPFLVNEVNQYASTRHMRLNPKKCKEMRICFLKYRSPIGGQLLIGGHQVDLVKHFKLLGVYMSDDLSWNKHVGYITKKGFKRLYILRQLKIAGISDKDLALIYISLIRSVLEYAAPVWASYRSTYLMISNPFNEGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IB59</accession>
    <name>A0A7D9IB59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Filamin-A, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A053217</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the filamin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005403">
        <property type="protein sequence ID" value="CAB4006078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IB59"/>
    <dbReference type="OrthoDB" id="18740at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030036">
        <property type="term" value="P:actin cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044801">
        <property type="entry name" value="Filamin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017868">
        <property type="entry name" value="Filamin/ABP280_repeat-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001298">
        <property type="entry name" value="Filamin/ABP280_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38537:SF8">
        <property type="entry name" value="FILAMIN-A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38537">
        <property type="entry name" value="JITTERBUG, ISOFORM N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00630">
        <property type="entry name" value="Filamin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00033">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00557">
        <property type="entry name" value="IG_FLMN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50194">
        <property type="entry name" value="FILAMIN_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="238"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="379"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4006078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="632" mass="72241" checksum="E09E2C1B799EF151" modified="2020-12-02" version="1">MEMRQKRMSVYKTMMRRRAFTNWANSVLRSLDKQIVDIFNPNECALLEALLEIVLAKSEKKFKDITQERKASEREAILGRAGEFKKNYFKSEQGQVVNRHTVIQFIWDLIEFFHISPGKELWEIENAPMNAKEILLKWLNSKLAGRKVRNFTTDWNDGTLLCELINSLEPGLIPARAYLQGSWPQKNVKVAMETAEKNWGISMIISPDDMICSEVDELSVMTYIALIFEHDLERNSTNQNSHLSNGHIENDSIENGSIENGSKENGVHTENNLNSDNTKENINHKPEMGKVGKEIEYRLDLHDVNANEITVSVEFKPAGKLTQDYKPDLRVFSMGKGRFRVKYTPNLAGNYRLSMYYKDEHIADSPYCVQVLPKLHMKGNGTDLNNNKNRKNKSSENFLSNGDKNESEELLTQDGFYGFDGDGLKNATVGKLAVFTVITDNRDKGPLSVCINCPAVSLPVPHVRTTCSKNYSTHTVAYMPTLAGTYNIYVRWGLKLINGSPFEVSVSDHDSGLPRVSQAKDNPSKRQSTQFSHIKVYCSSSSLDPDVIRETEQLEKLLQRYGLTRNSSDDIWVSIDVELQKDERDLIFRLAGTRRLPLLFIHEQCLGNFDEVCELDKKNELEERLMYKIRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICC8</accession>
    <name>A0A7D9ICC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000967</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004194">
        <property type="protein sequence ID" value="CAB4001855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICC8"/>
    <dbReference type="OrthoDB" id="10602627at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="230"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="230"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="242"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="29095" checksum="755E94CDCC4568A3" modified="2020-12-02" version="1">MSKKTKTTIALDVKLNLTPPKRKKKLQKSKCMLKCKLEKDEPSIRFSKKSREVVYRAAQLRNDDTVIAILDSFGEELPSVDYGYHRKCYQKYTNKRLLEKLNEEVIEPEETVQTVELEASTSAESILQTPCTSSRKRGRQGKILADHECCICGTKKTARTGSGYEPLTKCVTENGAETLMQQAEKDDEYPSLRAEVAGVDWQTIIAREYYYHKSCYKKLAKKRVHWQIKNGKTQRLRRKQQKSREKSERSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ID73</accession>
    <name>A0A7D9ID73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PREDICTED: uncharacterized protein LOC107353892</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A040135</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004597">
        <property type="protein sequence ID" value="CAB4003319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ID73"/>
    <dbReference type="OrthoDB" id="6431014at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="103"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="73"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="116"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="166"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="206"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="489" mass="54526" checksum="9198266453099998" modified="2020-12-02" version="1">MSEEKAILARFRAVRGGNRAVITKLINETRTIFEDEQPNRGRLTTITDLLNEKTRLVKDLDEKIINSCEVSDIANEIEEADELNSRILDVQREIKELLNGVATKSPQKNTIEDSSDSGNEVLSVPEQSSEQSTIPEVQIEASGSTSLRPTNDAPQPAPTESCQPPGQHPGSPPPGSQPPGQHPGSPPPGSQPPGGPLNAGSKPFNPANTPSTGNQQPSTTATSCSKFGYRQHKGIVSTSRRGLPRKLMSDNAKTFKAAAKEIRTISRATNVQRYLTDNGVTWAFITEKAPWHGGFWERLVRSVKRCLKKSLGRTSLTFEELRTVIVEIESTLNSRPLTYIYDEQEGVSYPLTPSCLIYGRRITTTPSDSHFEIACTNKTLTKRAKYQNRILKNFTDQWKKEYLVSIREASRSETNRKESIEVGDVVILKDGNQPRTFWRLAKIETLIPSKDKIVRSVMVKVLGNDKKKPILLRRPIQHLMPLEVRSKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDV1</accession>
    <name>A0A7D9IDV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A069000</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004936">
        <property type="protein sequence ID" value="CAB4004559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDV1"/>
    <dbReference type="OrthoDB" id="10580146at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000082">
        <property type="entry name" value="SEA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036364">
        <property type="entry name" value="SEA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82671">
        <property type="entry name" value="SEA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50024">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="125"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="20467" checksum="5794561BAAAEA2B0" modified="2020-12-02" version="1">MRILNVGFVESYRDKNSIDYKNLRSMVEASLLLVFEKMGGFFRISDVDFEEGSVIANIHTEFSSESTHVSTSSLARAVVDASDENGNLGELRSDTSFLQKQITPTAPPTTESPNNEDDERGDSNAFIGAVVAIGSAALVCVILAVCLVCYFKNKTAGKRQPVVVFELNSSQVGSHENHRFDPYYEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3Z0</accession>
    <name>A0A7D9J3Z0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068710</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011443">
        <property type="protein sequence ID" value="CAB4021451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3Z0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13117" checksum="CB2DFB087CA06D04" modified="2020-12-02" version="1">MDSEKKRSCYTQLLGVFHDIGEALDSGKEADMIYLDFSKAFDSVSHLKLLLKLQQHGISGLLLNWISDYLSNRRQTRSGQRSRIFLPSCHLGGSTRKYTWSTPVLDLCKLSYRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J481</accession>
    <name>A0A7D9J481_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 13">GPI alpha-1,4-mannosyltransferase I, catalytic subunit</fullName>
            <ecNumber evidence="13">2.4.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">GPI mannosyltransferase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A059501</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 13">Catalytic subunit of the glycosylphosphatidylinositol-mannosyltransferase I complex which catalyzes the transfer of the first mannose, via an alpha-1,4 bond from a dolichol-phosphate-mannose (Dol-P-Man) to the glucosaminyl acyl phosphatidylinositol (GlcN-(acyl)PI) intermediate to generate alpha-D-Man-(1-&gt;4)-alpha-D-GlcN-(1-&gt;6)-(1-radyl,2-acyl-sn-glycero-3-phospho)-2-acyl-inositol and participates in the sixth step of the glycosylphosphatidylinositol-anchor biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 13">Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Endoplasmic reticulum membrane</location>
            <topology evidence="1 13">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the PIGM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="13"/>
    <dbReference type="EMBL" id="CACRXK020011509">
        <property type="protein sequence ID" value="CAB4021577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J481"/>
    <dbReference type="OrthoDB" id="1741594at2759"/>
    <dbReference type="UniPathway" id="UPA00196"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990529">
        <property type="term" value="C:glycosylphosphatidylinositol-mannosyltransferase I complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051751">
        <property type="term" value="F:alpha-1,4-mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004376">
        <property type="term" value="F:GPI mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006506">
        <property type="term" value="P:GPI anchor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007704">
        <property type="entry name" value="PIG-M"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12886:SF0">
        <property type="entry name" value="GPI MANNOSYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12886">
        <property type="entry name" value="PIG-M MANNOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05007">
        <property type="entry name" value="Mannosyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5 13 14" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4 13" id="KW-0337">GPI-anchor biosynthesis</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="87"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="275"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="306"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="349"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="374"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00093408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00093608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU365064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4021577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="47070" checksum="2C86EEE7A031A58A" modified="2020-12-02" version="1">MAANFFYLKKTCIIAVVLRLLFMIYGEWQDATMVVKYTDIDYEVFTDAARHVANGSSPYRRATYRYTPLLAWILVPNITLHKAFGKLFFVLCDIIAGYLIHLILKTEGIVDYTAVKYSWIWFFNPMIITVSTRGNAESVLAVLVLSTLYFMLNKRFILSAVLLAFSVHFKIYPIIYSLPLYLMVGWFARGKGGECGHTKQDGMLQVIFSHISHPHQLLYAVISGSMFLLINGVMYYMYGFEFFEHTYLYHVTRKDVKHNFSVYFYMLYLTMDTSFSWIISLLAFLPQLILVLVFGVKYYKDLPFCLFVQTFVFVTFNKVCTSQYFLWYLSLLPLILPRVKINMTKALKMLLAWCISQALWLSAAYLLEFQGYNTLLLVWTASVLFFAVNIWILYTVIVNHTYSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6C6</accession>
    <name>A0A7D9J6C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072868</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012241">
        <property type="protein sequence ID" value="CAB4022959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6C6"/>
    <dbReference type="OrthoDB" id="120976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47679:SF2">
        <property type="entry name" value="C-TERMINAL OF ROC (COR) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47679">
        <property type="entry name" value="PROTEIN TORNADO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="668"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="668" mass="77086" checksum="543BC7AE7F479854" modified="2020-12-02" version="1" fragment="single">SPSTPGIDVNVIELSEQKAEDPWKKREVNKFMTSESEAKTVFYKKTVEYLQRNLEDTDSDHDIDSGVQLYFEGDAPEPVKPVKRTKLSSEEISEIKLQANILTTEHDQKEVLRVFVTDFAGQSIYYDTHGCFVKPHCPYVLVHDLSLEFDEPAVPRFKDRDEEEEIEMNNPHRNTNLDNFTSWLKFLQGLGEWQDQQFPDKSGHCTTAKGENFKRPPVLIALTHSDKVKGNDSKIDSVLKRIKNVVSEGKYENVIPGVFQIDNTLEGDDGDDVRKLRRKLFDLSNAVLDQETFVPVKWLDFEAALSRKLSPDCKYIPVDEAKREAEACDVGEFDQAIKFLHRQGVVVHHSGSSKVVLDPPWLMKRFTKVISMPGKLDALSMHPLGVFKEKGILFREYFQTLEHAELLEELLQKFNLICPCQYEGKPAFYVPSVAPTIMIPGKELEASKKELNVPSLFVTFPRKLVPISLFTKLQVKLISEWERRFRKQQATPNFYCNYSLLPLIIDRDVYDICLIDLHEFIKVAVFPKQDGNHFKFASYLLAILKKCLDDLKSPDQLLFSMTSYDLEVKCTCCFGKEEIRCFRHHEIQCHSDRCGHRHFWKLSDLQRSCNDQSPAVCRSDKRSSEVFDIKSVNIWLNTANKVQRMVKRLKSVVMTAFKNKDDDELTYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6E8</accession>
    <name>A0A7D9J6E8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Leucine-rich repeat-containing DDB_G0290503 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A067868</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012159">
        <property type="protein sequence ID" value="CAB4022788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6E8"/>
    <dbReference type="OrthoDB" id="5986535at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="8"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="18"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="45"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4022788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="356" mass="39995" checksum="E7805A45725085C1" modified="2020-12-02" version="1">MSIQFLLPHDDSSRSDEFPNTYTEEVQSYLPNNDSSSESNQPTTEISGEGSESIQEGSFEKVILDCIKKCNTENIIDPIEILRCASTYIVQGRPLDITSASDTVEGATNFIHVDREGVLQSAFEKISSLENPRLILEVSFYGELASDLGGPRKEFFMLCLRKIQSKYFAKGLRDYMSADYEVVGLIMGLSMLQNGRVPHYLTEEIIKETFMTESPSLCIANLRAGFAKVRLFQIGKELPAFVDLFRATNSNRLTRKKLISLLEPSFSEEGSNTRHYENAAYRTFSNYVRIVASGRRNQVALGNILQFCMATDEEPPIGFAMHPSIQFVTASSSSKCAFISFREYMQPSCDVSYTFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGF9</accession>
    <name>A0A7D9JGF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ankyrin repeat-containing domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A074612</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016038">
        <property type="protein sequence ID" value="CAB4029249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGF9"/>
    <dbReference type="OrthoDB" id="339325at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050889">
        <property type="entry name" value="Dendritic_Spine_Reg/Scaffold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24166:SF48">
        <property type="entry name" value="PROTEIN VAPYRIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24166">
        <property type="entry name" value="ROLLING PEBBLES, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="13"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="761"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4029249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="761" mass="83416" checksum="9D28E422D21AC9BA" modified="2020-12-02" version="1" fragment="single">AVLSGSLEIVKYLVEHGADVNLYASRSDSPLHTAASSGSLEIVKYLVEHGANVNLNSSIVGTALHSAASSASLEIVKYLVEHGANVNLNSLIVGTAIHSAASFASLKIVKYLVEHNADVTFENYRVGSPLHSAASSGSLEIVKYLVEHNGDVNCEIEHVGSPLHSAASSGSLEILKYLVEHGANVNLNTSFVASSGSLEIVKYLFEHNADVNCENGRVGSPLHTAASSGSLEIIKYLVEHGANVNLNTSLVGSPLRSAASSGTLEIVKYLVEHGANVNLKTLVVGSPLHSAASSGSLEIVKYLVEHNADVNCENGRVGSPLHSATSSGSLEIVKYLVEHGADVIHNAAQFGSLEMVKYLVEHGAELTNEENLDMRAILFLACEDGNPTIVDYLLQHGAIKDMNNWKLQSPLRIACRKGHTTVVQILLKYNVDIQKEKEPLICGNDEIINILNVDLKKSLKHREKIQILKGIDNVNLTKVGPPVKYFSPQKSLKLGKGSMGVVYVGILEDGAEVAVKRILKQEFEDTAKNELEILSRIDASKSPFIVSYRKCLEDATFVYIVLDLYEETLTEHVRTQRLEYLQDRGPRMIKDILSGIEFLHSRKILHRDLKPSNVLVDLEGHMRLADFGISRVLNEEETTVHTGAKGTRDWMPAEVIEAIYQEEKGRFKKKSDVQVAGMIAFYISTKGEHPFGPALERMINISKGSPVNLDMLRDLQVRKFISWLISHNINDRPYAADALADSFMVHVTNSLRKIILQKSRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JW50</accession>
    <name>A0A7D9JW50_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084038</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022617">
        <property type="protein sequence ID" value="CAB4036989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JW50"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12388" checksum="681D18935C947F79" modified="2020-12-02" version="1" fragment="single">ENDVKCSVPQGSILGPLFFLLYINDLPACLSKTKPRLFADDTNITAAGECLSDLEDAVNSDLEMLRKWLTATKLSLKVVKTEFQIIGTKQMLKKASVQQLKIHIENIPIKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0S8</accession>
    <name>A0A7D9K0S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008566</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024993">
        <property type="protein sequence ID" value="CAB4039131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0S8"/>
    <dbReference type="OrthoDB" id="6381911at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27742" checksum="CFF021E1D1FCB467" modified="2020-12-02" version="1">MELSSPVTEIFNASIQERVVPVSWTVADVIPIRKTKNDLRPISLTPILSKTLEHFVAEWIMSQIRHLVGRKQFGSLAGLSTTHALLSFFHHLYGTTDQSDQCVRVLLLDFSKAFDRIDHHILIKKMEEMAIDPVLIAWVKQFLTGRKQRVKIGKYTSSLEPVNGGVPQGTVFGPILFMIMINELLVDWDDRWKYVDDSSVPETLSRNQDSDFQTILEGITQWCCFWKNNPNFPPMITPQASSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K5Q9</accession>
    <name>A0A7D9K5Q9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ras-related Rab-19</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A056671</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027297">
        <property type="protein sequence ID" value="CAB4040820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K5Q9"/>
    <dbReference type="OrthoDB" id="5974340at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00154">
        <property type="entry name" value="Rab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001204">
        <property type="entry name" value="Small GTP-binding protein, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050227">
        <property type="entry name" value="Rab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47977">
        <property type="entry name" value="RAS-RELATED PROTEIN RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00176">
        <property type="entry name" value="RAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51417">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51420">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4040820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24731" checksum="A059CAAD16E7DC02" modified="2020-12-02" version="1">MDDREDRSWREGPKYSFKIIVLGSKGVGKSSLLKRFQFDEFEDVPSHTIGVGFSTHNITIGCDSVQLTLWDTAGEERFKSLTSQYYRNADAAIVVFDLTSKKSFEEVRDHWIHAFRRVVGSTAYVALVGNKSDLLEERRVDKNMFEEFASLYCIHPWETSAKDATNVQELFKSMAKELIERVAQLQSLDSAPDSLFLHNVPDNPRSDLYSYCCSYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K5V1</accession>
    <name>A0A7D9K5V1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052724</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028285">
        <property type="protein sequence ID" value="CAB4041416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K5V1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="277"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="416"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="311"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="435" mass="48358" checksum="64558D339221F77D" modified="2020-12-02" version="1">MWTNNRMQDNRGMGHPYPPQPLPSANTPWQSTGGVLPDGRQMLAGWRPPTAMANGVTSATPGTSLEQKRESVEADQIDSNNYRTHELPNERKGIEDTDKDSSKSGVGEHKGTGLIKTPGNPPSEDDLRFPFIMKQGRQQNEPNPYPSIQTHNPAMTKLHNPSVLEGVGSPVGIESQRVKTPPVTIESGEGKVFVNLTSKVNQPRVGEKRSNPYSVSSLMANDEQRTKRSEHEQLKFSALLQEMSQGRRPEHLVNLQTTDASAQFMDLNNTRNQLSSSLIRQSQTERGAGLGTPGASQAQSMGASYPKPAQGIQSPLNCPTGISSLMNMRSPGNMLNQERTGFNPRTMYPGYPSHGEFQRQQMMLLQQQQQQRQMMQRENYHMAGSMMANGIPRNMPPEYAYYTQRPMFGAMMEQYKNGTRPPTIDDLTSKNSRVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KLN2</accession>
    <name>A0A7D9KLN2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Spermatogenesis-associated 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A088636</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020045101">
        <property type="protein sequence ID" value="CAB4046048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KLN2"/>
    <dbReference type="OrthoDB" id="8956381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990275">
        <property type="term" value="F:preribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050168">
        <property type="entry name" value="AAA_ATPase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077">
        <property type="entry name" value="AAA-FAMILY ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077:SF171">
        <property type="entry name" value="NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4046048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15774" checksum="9F23542C79E8497D" modified="2020-12-02" version="1" fragment="single">MPRRSRVLCMLFFPRDRYYGESEGKLRDIFLDAERNAPSIIFIDELDALCPKRDKLQNEFEKRIVATLLTLMDGLTTSSTSGVFVLAASNRPDSLDPALRRPGRFEKEIEIGIPKSSGRADILSKLLKKIPHSLSHDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KZP0</accession>
    <name>A0A7D9KZP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060849</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012299">
        <property type="protein sequence ID" value="CAB4023065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KZP0"/>
    <dbReference type="OrthoDB" id="5988523at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="373" mass="42517" checksum="82868FFC849100A9" modified="2020-12-02" version="1">MSDGQSKRNRKKRQHQTQSTVSVDIDPEDEESDHCDQLSEDELLNTLSNDLSVPYIPAVNTETNVETEIEDVYKSPPPLTENETNKESEWVFDYLDRIQDVLQDEIVHTESEMDESDDDELWYARFNCDWQCQFFPLKYQWKNNYFQCLELVVCGIHLVFTSKESRRIVKTLKISMIDGILSDQQNISFMWNTDVIPVFKLSKLAIWPLYCIVNELPYAQRIRRSNMIFAGPWFGSTKPNMLTYFKPFHSSLRLLETEGIRVGSPEAGTFISRAILLAGTCDLPAKCLVCNTVQFNGFYGCSECKQPGESVRTDKGGTVLSFPFSQNNPKGPPRMHQGTIEDAKEAVLTKKPCDGVKGPSWLAGLKHDIIKGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1C6</accession>
    <name>A0A7D9L1C6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">methylmalonate-semialdehyde dehydrogenase (CoA acylating)</fullName>
            <ecNumber evidence="2">1.2.1.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A032395</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>2-methyl-3-oxopropanoate + NAD(+) + CoA + H2O = propanoyl-CoA + hydrogencarbonate + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:20804"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57392"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57700"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.2.1.27"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="5">
            <dbReference type="Rhea" id="RHEA:20805"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>3-oxopropanoate + NAD(+) + CoA + H2O = hydrogencarbonate + acetyl-CoA + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:76615"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:33190"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.2.1.27"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="6">
            <dbReference type="Rhea" id="RHEA:76616"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.27" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020011438">
        <property type="protein sequence ID" value="CAB4021443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1C6"/>
    <dbReference type="OrthoDB" id="310895at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004491">
        <property type="term" value="F:methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006574">
        <property type="term" value="P:L-valine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006210">
        <property type="term" value="P:thymine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.309.10:FF:000002">
        <property type="entry name" value="Methylmalonate-semialdehyde dehydrogenase (Acylating)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="entry name" value="Aldehyde Dehydrogenase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="entry name" value="Aldehyde Dehydrogenase, Chain A, domain 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010061">
        <property type="entry name" value="MeMal-semiAld_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43866">
        <property type="entry name" value="MALONATE-SEMIALDEHYDE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43866:SF3">
        <property type="entry name" value="METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="ALDH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde dehydrogenase" evidence="7">
        <location>
            <begin position="3"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Aldehyde dehydrogenase" evidence="7">
        <location>
            <begin position="215"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00048821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4021443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="31273" checksum="81C842BF684B02F4" modified="2020-12-02" version="1">MFPLAVVCGNTFVMKPSERVPGATMLLAKLAQDAGLPDGVLNVIHGAHEAVNFICDDPSIQAISFVGSDQAGKYIYDRGSQNRKRVQSNMGAKNHGVIMPDANKDHALNQLVGAAFGAAGQRCMALSTAIFVGESKDWIPEFVERAKKLKVNAGHQPDADLGPLISPQAKDRVCDLVQSGADEGATIDLDGRGVKVEGYEKGNFVGPTVISGVKAVEIINNNEYGNGTAIFTSSGAVARRFQNDVNVGQIGVNVPIPVALPMFSFTGSRGSFLGSSHFYGKEPPSEKYQQNFTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1S6</accession>
    <name>A0A7D9L1S6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC102806687</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013006">
        <property type="protein sequence ID" value="CAB4024394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10055784at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="429"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="104"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="463"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1365" mass="157158" checksum="D73C88C7D5BB5C31" modified="2020-12-02" version="1" fragment="single">RTAHFSTTESESERRGSQEGKCLFSVSVSARSRVSSRKKSNYTHLSKEQEHRSRERLDEVKERHHYEEKLQDLKLKTLKREMQIRRELEIRQAERDLESCSIAKSSSSSSKNSSNPQSVADQSLKEKQLPRQVNVQLPVYSSDCNKINKKFTTTFKAVVDKQPYEPEPIVKFAILEKYLTGPAKDFIRGFPFTENSYPLALKALQDRFGDEEDQASFYLGAVENLPKIKISDVPGLRKFYDDLNTNIQVLENMGPDVAMHLNDPRRMKLLSTKLPRNLAVAWATYQDDKGIGSDMRAFAEWLRKKVQILERVEVQPHIEAGDKRVPGKQVFKPHVHVTTRDEVTQTERTETKLPIERGTCWVCRDGNRWPGQCLVLKKMTVYERKQLVKQNRACFKCLLRGNLVAKCRRKVGCLIENCKGTRHTLLHQENPKDPAISTHKVERKSSETSGGEQLARNEETPTKETLSVTSNANRSCPKRKIVALPVKKIDILNGYGQRVTLNCLDDSGSQVRLITHRLVESLGLTTRRSNRLTLSCVGDQNIKLNSEVSFLIQVKDNELSIPITAYAIPNISNYSPPFDIEEIKQKFPYLQDVDVIVDTENVDLLVGQDYPILRRQLKTRYGKPDEPYAVRTVLGWGICVPVDERVGEDPSTHLISSCSPPTTSVGDFNLKRFWEIEQMPVKEPSLYTNKQQKILEETEDIVWTKRGVLRRLAQLFDPMGLLAAFLVRAKITIPRHVWAELEEVDMELHLFADASQRDMAAVAYVKCQRNNEVKVSLLMSKTQVAPLKKMSIPRLELQVCLMAVRLAEFIVKQMEFKTVKVVFWSDSTVALLWIKMESCVLKEFVANRVATIQEKTEGCQWHHVSGQDNPADLASRGVDLRELLKPDDIWFSGPKFRRNLKVEDFSTFHKLRKRVAFFRRPFRNWRLKKSKRLTKPTTRSAMKKKDIQHPIKPLSADELREAEIWLLRRDQSICFAKEITVLEKQQTGLGKTKTRKMLVPKSSPLYSLSPFMDDEGLVRLGGRLERSPLSYDCRHPIILGKGSHLAALLIRRSHEEVKHFGVNTVLCNLRQRYWPIRGREQVKKILSSCVLCKKWRGNPGVQFMADLPASRVDFPNPPFTLTGVDYFGPITTKAGFRGGRREKRYGVVFTCLQTRAVHLEVAQSLSTDDFLKVFSRFVARRSKPKRMFSDQGTNFVGAEREMRQLVKELCNDVVLKTKLQQEALDWNFNPPFAPHMGGAREAMVKLAKRQLMPLLPSEIQVDEVSPKRRWLFLQSIMSKIWKRWQKEYLPCLQRRPKWNQTVRNLEPGDLVLILDPNQPRGRWLRGKIEETFPDDRNVVRSAKVLTQNGVLHRPVTKLILLLREH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L440</accession>
    <name>A0A7D9L440_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA mismatch repair protein Msh2</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">MutS protein homolog 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A001260</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013455">
        <property type="protein sequence ID" value="CAB4025168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L440"/>
    <dbReference type="OrthoDB" id="295033at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032301">
        <property type="term" value="C:MutSalpha complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006312">
        <property type="term" value="P:mitotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03285">
        <property type="entry name" value="ABC_MSH2_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000523">
        <property type="entry name" value="DNA mismatch repair protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000432">
        <property type="entry name" value="DNA_mismatch_repair_MutS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032642">
        <property type="entry name" value="Msh2_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045076">
        <property type="entry name" value="MutS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11361:SF35">
        <property type="entry name" value="DNA MISMATCH REPAIR PROTEIN MSH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11361">
        <property type="entry name" value="DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00488">
        <property type="entry name" value="MutS_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00534">
        <property type="entry name" value="MUTSac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00486">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00019549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4025168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="38691" checksum="C41958E702DBE647" modified="2020-12-02" version="1" fragment="single">GYGEPMQLLSDTLAKLDVLISFSHVAACAPIPYCRPKILPKEQGSVILTAARHPCLEVQDEIAFIPNDVTLNREEQSFLIITGPNMGGKSTYIRSVSVAVLMAQIGCFVPCEAAEISIKDAILARVGSADSQLKGVSTFMSEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEFISTRIKALCLFATHFHELTALADVVPTVRNYHVTAMTTGDTLTLLYRIKTGVCDQSFGIHVAELTNFPRKVIEFAKRKAEELEDFQGQTADDNQDNSKEETISCAKKRRMDKKEGDKLIQEYLQNVAALPVDNLTESEVSSKVLGLKNALFAKNNNYINDMLTRNTQVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LAJ2</accession>
    <name>A0A7D9LAJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043109</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015806">
        <property type="protein sequence ID" value="CAB4028898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LAJ2"/>
    <dbReference type="OrthoDB" id="5969324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18981" checksum="73BCD59E8B09DBDB" modified="2020-12-02" version="1">MSSTKQCISCNREMPISSESCVCGRVLSDIRSLGLEGKRYSGYREELYSRLEIRRILKGHDKPKRPRLKQKLPNTKQDITSSLHKPQMKRRHKRKLPGPQHMTSNTRQHSQLYQVNKNSSQQTKIEDNPDLWYLNPRFNFTDALADINKRLISQTLFWVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LC46</accession>
    <name>A0A7D9LC46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sorbitol dehydrogenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A006381</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017159">
        <property type="protein sequence ID" value="CAB4030815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LC46"/>
    <dbReference type="OrthoDB" id="1879366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003939">
        <property type="term" value="F:L-iditol 2-dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006062">
        <property type="term" value="P:sorbitol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43161">
        <property type="entry name" value="SORBITOL DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43161:SF9">
        <property type="entry name" value="SORBITOL DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4030815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="50" mass="5468" checksum="499D366B1E646E82" modified="2020-12-02" version="1" fragment="single">YPTALSLVASGAVNVKPLVTHKFKLEESLKAFETAERGEGIKVIIECHNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LDU0</accession>
    <name>A0A7D9LDU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032435</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017958">
        <property type="protein sequence ID" value="CAB4031881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LDU0"/>
    <dbReference type="OrthoDB" id="7424441at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47027">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47027:SF20">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN WITH RNA-DIRECTED DNA POLYMERASE DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="273" mass="31933" checksum="CC32242A209B92AF" modified="2020-12-02" version="1" fragment="single">MANIINKARTKQRSLVIALLDLKNAFGEIHHNLITSVLDYHHIPEHVKLIIKSLYTDFKTSIITSEFRTPFIPYRGVLQGECLSPLLFNMCFNTFIEHIKTDKYRQFGFSLQFLNPIHWFQFADDAAVISSQESENQHLLNRFSIWCQWSNMIIRVDKCSTKGIKKALTKSIQYLLKLLINKQLIPKTNIDEAFQYLGRYFSFNMTDKHHKSELISPVEELMADIDSKPLHPKNKILLYSRYLLSKLSWHFTVSSVSKTWVTENIDSKINSYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LEK4</accession>
    <name>A0A7D9LEK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084937</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017484">
        <property type="protein sequence ID" value="CAB4031265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LEK4"/>
    <dbReference type="OrthoDB" id="5986458at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="93"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13707" checksum="C3C3D2D2114E6ADA" modified="2020-12-02" version="1" fragment="single">LNAGWQDGAVVYKLTQEFIHNLDKLSDEFRDKLFGQYESEDNSDSDSDDEETSVTQKLSHEVQEEVLQMSRRRIIRSRAGQNISSYAELSGQRQKRGSRTQRTHMLGQNTDEIVSALRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJN9</accession>
    <name>A0A7D9LJN9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065492</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018172">
        <property type="protein sequence ID" value="CAB4032153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJN9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="9451" checksum="39DF6E9DA7869BF6" modified="2020-12-02" version="1" fragment="single">MRRTYPKQSLGPHKYVTATKRLESNRLDSNDDFVLEIVNILESQAVKDTEALAVVRVLNEKVRVKLDTGAAVNIMPNNKKISKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LMB2</accession>
    <name>A0A7D9LMB2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038337</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022733">
        <property type="protein sequence ID" value="CAB4037099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LMB2"/>
    <dbReference type="OrthoDB" id="5957838at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22606" checksum="E0CDD9C3D22F3D71" modified="2020-12-02" version="1" fragment="single">SDEAYEESNGHPDLVNTAVPKTSKASIGKRNLRGKAVIKTQTKTKKKPKRAGKARKKRLTPLDVSNLILSKNIKTETELHALAQEQREQGKTDVVEFILNRSPKTLADILSTTWQMKGAREKIARSKKSRMDLLQEASNSDCVSGCNGDWLQCAKEVLQNNGINISCFANSVRESLTNGRKKHHNVMIVGPANCGKTFLLKPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LRB6</accession>
    <name>A0A7D9LRB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC113371441</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023274">
        <property type="protein sequence ID" value="CAB4037609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LRB6"/>
    <dbReference type="OrthoDB" id="8193998at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001995">
        <property type="entry name" value="Peptidase_A2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50175">
        <property type="entry name" value="ASP_PROT_RETROV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14527" checksum="DE4AC37C0335BC50" modified="2020-12-02" version="1">MQRGRQTKLSRGDSEMDGPYERRNETIKHLRRVLKRSPFVRARWGIGSKEVSLLLDTGAEVSLVDESVLTSDERKTMKEPDTKPPQGVSGEVINIVGTLTKTERVGGQVVRNYKFFVVKNCYKISSRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M0Q0</accession>
    <name>A0A7D9M0Q0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079087</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028644">
        <property type="protein sequence ID" value="CAB4041640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M0Q0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12350" checksum="0D69774FE48F0958" modified="2020-12-02" version="1" fragment="single">MESRPAFLGRGRGRGNREQRSNSQQGSNFKNGKKSEKTTSAWNSGPPVLTREKPDISTDKAADLSDRHKKVEEIRQAAANFTDETYLSSSDSDEDINDNEILRNTLTTYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M777</accession>
    <name>A0A7D9M777_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089601</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030592">
        <property type="protein sequence ID" value="CAB4042674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M777"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19512" checksum="C2CB1AB69AC6C7A7" modified="2020-12-02" version="1" fragment="single">RCAGKFSVVTVPDHENVIRGKRGSRQKLAWNFICFGALHSKTVRCKRNNSEEITDRDGYYDVTRNRSSKINEIALSITITIFNFSRSENITCTTDAEGSPSATFNLVVEEDADVGQRQNELEKNSSFFKEKGVWIVVGCSVLLFFVAVLLLLWCRKKVGRKLQLFYHPKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M869</accession>
    <name>A0A7D9M869_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dynamin-2-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033515">
        <property type="protein sequence ID" value="CAB4043918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M869"/>
    <dbReference type="OrthoDB" id="5061070at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1240">
        <property type="entry name" value="Dynamin, middle domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003130">
        <property type="entry name" value="GED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020850">
        <property type="entry name" value="GED_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02212">
        <property type="entry name" value="GED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51388">
        <property type="entry name" value="GED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9189" checksum="DF2193385394BCF9" modified="2020-12-02" version="1" fragment="single">MAGETQDIVDEWKASFLRAGVYPQREQNENEKGSELGSLDPQMERQVETIRNLVDSYLKIVSKTIRDLVPKACMFMIVQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G158</accession>
    <name>A0A6S7G158_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000872">
        <property type="protein sequence ID" value="CAB3985435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G158"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17223" checksum="A0CE4581AF31F852" modified="2020-12-02" version="1">MECIGVLPALEDVIQPANIPLFGILAENTAEPGQCYFCFEQINGNELLAMTMHCCQQKAHCRCLQMWATHYNGTDIETVRCGYCRAPFPDKELCYLCLQNKITGQELKKTRCCQTTIHKKCTEILKEILANLTFDFALECGKLTFCGCVWHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4T8</accession>
    <name>A0A6S7G4T8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine threonine- kinase ULK4 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000327">
        <property type="protein sequence ID" value="CAB3980821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="24822at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056981">
        <property type="entry name" value="HEAT_ULK4_RUNKEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045906">
        <property type="entry name" value="ULK4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46240">
        <property type="entry name" value="SER/THR PROTEIN KINASE ULK4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46240:SF1">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE ULK4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23606">
        <property type="entry name" value="HEAT_ULK4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="320"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="798"/>
            <end position="823"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="320"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="373"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1336" mass="148629" checksum="5892FD0A10BBD0C8" modified="2020-12-02" version="1">MENYVLYDELGKGTYSVVYKGRKKGSVEYVAVHCAEKTKRKELQNIVRLTHELSHDNIVTFYEWYETTNHIWMIMELCTGQSLSVMLEQDGCFPETTVRSFGLDIASGLHYLHGLGILYCDLRCSKLILDGYGKVKLSNFSLARVEDEDEINELGGDNDIDEESRRPSPMYMAPEILHGYSHSVSSELWSFGCVLYELFTGSLPFEADSFSELVNKVTIQNLLYPLQVINGVELGPSDEFYSLIQSLLCKEEGSRLTWNELLRHPFWDGGLRLSMDDVEEGIERREKPVLEQEKPVLVEQEQKKASVLASDDGRFLKKSNLGQTVMTGASHVSKQRPDTAPEGSSVNIRHGTYKVEQLRPHTTQSDQAKTRKLTKEERENKRNVTGSPKSSTPRKKAHAQKATGTVNSDDKLQNSRANVISKPENSNHALLGQDCSFDVENLLYHPSDFVVASIVDNPKIKKIIVPKWEAKTMGITTLTAEQLLKANNDELAKYFNEISRLLEQPQQTSGHSGGQRSKLHCASYLASILQNTDVANLVANSKLVTDLLQVIKQSSSADLKARLGLALGFLASNATLISDTFNMSEVFMVLSETIRDNFRNSKLKQSLLPCLGEFLFYAATQEESDSRINENWEVPGITFTIITKCLREGEDSIVQHYAAKTIENVVTADTQHYEKFATAETAQMLWNLFTHCSGDSQKLTAISALCRLTGHSVALFQHVVDNAGLRTVLNCLVSGVTKVQQAIITMLAALVSKGAHTKRLIEDKEFIHKMMHFLDSPSIVIRSKAFVAIAAMSRENHGVSREHHGVSREHRVVSREHSRENHSVSRENHVALLHCCQSKLVTYIERDTKRQTPVKADSELLGYLRNCLNLCIQTVCHCVPKVITNLLVALQAVSGRKHPSAAQSKELKSCIPPLSIVLHLVTSNVFRERVVDESFVQNLGQLVAHVASMDRGTTSIGTTARQTTTDNLTNIVLSIIEAIAQHPSLLLQHRGLVIESVMPHLAVLTSSKEGDVRMFCFKMFADMAAMFLDSETLDDDQGKESAMQLSKLITSELLPRYETILQDQDPLPSYALKLLLAFLEHSPSFSEIVIDKGIVGILGEILERHDGDLSGSAVQTIISLLDCLVSSTADLWPLYEQGLIDHVTTLFVNGATLINQKDERNFSEVILPLLDTVHGIMKYSSKVVREAFQAKSGGNGAVLTEKAEKILLEGKPLVELTGVLVQFLCHYDPDIQEWSLRCLYQVVELFGGTYEDAMSVENIACFAGALLASDPRKQKQILRIIKRLVTSSTWHAAALKERGDALLDAMMQITKVDNGSEDTNAVKSLVVEITKATGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6L4</accession>
    <name>A0A6S7G6L4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A087925</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000688">
        <property type="protein sequence ID" value="CAB3984046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6L4"/>
    <dbReference type="OrthoDB" id="5990438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="3">
        <location>
            <begin position="161"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="4">
        <location>
            <begin position="774"/>
            <end position="807"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="54"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="55"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="807"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3984046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="807" mass="92405" checksum="C658F93F7B22FFB2" modified="2020-12-02" version="1" fragment="single">MGGVKFSITNENLELPLCTNTTRHNIQLRGRTVLGRLQLVQSVVPIDVKLKDNPSDTVLSDKNNDSSACKSSTIQDNSPVNLPEHLKDLDLGGLTEEQRNLASKLLVEQADAFAKDDDDVGHIPNLQMNIRLNDTKPVQKNYVAVPRPLYPEVKAYIEDLLNRNFIRKSNSPYSSPVVCVRKKDQTLRLCVDYRELNRKTQIDRHPIPRIQETLDNLGGNSWFSVLDQGKAYHQGFLKPESQPLTAFITPWGLYEWVRIPFGLSNAPASFQRFMESCLGDLRDEICIPYLDDIIVFSSNFNDHIEHLRKVFQRLKEHGVKLKPKKCNMFKREVVFLGRVVSGEGYKLDPSTIAPILRLKATPPKTVNEVRKLMGFLNYYRRYIANFSRIAKPIYDLVKVSENDSKNKRGKPVANHPVSWTSTHQSVLEELIDCLVRAPVMAYPDPHSPYVLHTDASENGLGAVLYQEQDDVLRVIAYGSRTLTPAEKNYHLHSGKLEFLTLKWAICEQFRDYLYYSPSFVVYTDNNPLTYVLSTAKLNATGFRWIGELADFNFTIRYRPGKMNTDADSLSRLPENMSEYMDSCTAETCQDELRAIVQSIQLEDKGKVTWVSSLTHDPTVLHGGDPQPIASSTPQFNLSDIRQAQLKDNVIGKVYSFVDRKQRPTSSQRAAESPDTKLLLHEWPKLFIDKDGVLRRQSNSHDQIVLPRPYHRTVLRELHDNMAHLGSERVLRLARDRFYWPRMQSDVEHYVRNICRCVKQRPPRLKTRAPLQPVITTAPFEMVSIDFVHLEKSSGGYEYILVIVDHFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8Y8</accession>
    <name>A0A6S7G8Y8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000451">
        <property type="protein sequence ID" value="CAB3981980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8Y8"/>
    <dbReference type="OrthoDB" id="10065482at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="22637" checksum="AB07AB55F0058BAA" modified="2020-12-02" version="1">MASTPSSIYAEEKQSESSEKTATKRQTGIANFFQKVESNPKRSLSPSLAPGVTGKKLRTKLDLQPPSKLPCVCMTCFKSFYVDEVVSKMIGVEMSIATDIALALGSTESIVESLYSVMKSQSMEGGQSNSTLALRTKIDWLMPTVIKADKLVTGIAQLYHDGDKSHNLPKHRWPILSYRATYGPGKDLSKVMTKKTTEGVRLPFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G945</accession>
    <name>A0A6S7G945_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017532</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001164">
        <property type="protein sequence ID" value="CAB3987373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G945"/>
    <dbReference type="OrthoDB" id="10056446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="305" mass="34347" checksum="FB4F83CE2600CBA5" modified="2020-12-02" version="1">MVEVIENSWSDDGKYDSDHITANQDDPSSSKIETVVEGGHKFTSCQCYCCDLAFQLKRVERDIQQLKNRAKTRDGNGNTKQYATRTHAKGNEKNESHEIGSDVIIIGDSIVKNIQPRKLTRKKVHKYTFPGKTAGEIEIEKEINFDNLKPIPSHVIIHVGTNNLPLESATECAQKIEKLAKKTKTQFPYSKIGLSGLTMRHDIAMLEKIQEVNKKIGHICKKLEISFIDNSTIDDTCLNGSKLHLNAKGSAILVVHFINFLKGGSASVSPRKQRHQDFPRSTIQKLGELLEVIVQPQKNIHRRKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAQ0</accession>
    <name>A0A6S7GAQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Family dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A065361</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TfdA dioxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000505">
        <property type="protein sequence ID" value="CAB3982480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAQ0"/>
    <dbReference type="OrthoDB" id="6017297at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051178">
        <property type="entry name" value="TfdA_dioxygenase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43779:SF3">
        <property type="entry name" value="(3R)-3-[(CARBOXYMETHYL)AMINO]FATTY ACID OXYGENASE_DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43779">
        <property type="entry name" value="DIOXYGENASE RV0097-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TauD/TfdA-like" evidence="6">
        <location>
            <begin position="42"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3982480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="34894" checksum="1B4A31911E07468F" modified="2020-12-02" version="1">MTREHTQCLFWLIFVITTCEGLLQQVCRSDNAVLGTEINLDDLEDNSASYEAITDMIKGALVANGVVVIRNQTMDRVGQCNFTRNLGPVIILPESFEGKDPEPGLRAIQRVTNYFDNGTWKGVGHCFGCYWHKDGDFHSADYIASVLYAERVVGPAAATMFLDNCAAYDLIPPGLKARIQDTVFWVSVRDIPDFKNGTEEDFALFPDSARHPIFYTHPGSGRRCLYMTNTMRTLRPKSAAEMRDLQRAWDIMVTQAPKYRHYWVAGDVVIWDNLAVMHRAGEKRPGYSPRDPRILFRTQYRISNYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDI8</accession>
    <name>A0A6S7GDI8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">BRISC and BRCA1-A complex member 1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Mediator of RAP80 interactions and targeting subunit of 40 kDa</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">New component of the BRCA1-A complex</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A077160</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the BABAM1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001546">
        <property type="protein sequence ID" value="CAB3989755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDI8"/>
    <dbReference type="OrthoDB" id="547311at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070531">
        <property type="term" value="C:BRCA1-A complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070552">
        <property type="term" value="C:BRISC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016604">
        <property type="term" value="C:nuclear body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006302">
        <property type="term" value="P:double-strand break repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007095">
        <property type="term" value="P:mitotic G2 DNA damage checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045739">
        <property type="term" value="P:positive regulation of DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd21502">
        <property type="entry name" value="vWA_BABAM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026126">
        <property type="entry name" value="BABAM1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15660">
        <property type="entry name" value="BRISC AND BRCA1-A COMPLEX MEMBER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15660:SF1">
        <property type="entry name" value="BRISC AND BRCA1-A COMPLEX MEMBER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6" id="KW-0132">Cell division</keyword>
    <keyword evidence="10" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0498">Mitosis</keyword>
    <keyword evidence="12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="16">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="16">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="16">
        <location>
            <begin position="79"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010809"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00030984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00031038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB3989755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="40187" checksum="5FDC25655022DA00" modified="2020-12-02" version="1">MNQQQANPSSIQQPVTGAAAQQPEILPQQSASVNPFQQPPQQSASITPAQQPANAPSAPPPDDPLPDSNRPQETTILPGEEKRESPEGQEKQQENGVETEEDEQQTPKINCPEKIVLCFDLSSELNEIILRQNQKERSVFEQLKKSTEIFVKHKLRFNKKHQIAILTFEKEALWVQDFSSDVNLINDTLDNIRTSPTDPLPQFDMMSLLETIENHVELPKSSNIVDIPPEYVVRVILIYGRSHSEIPSLSSEAKRIFDQYVSCRLFFFDVLYIHEVPSEDNKCQEIYDALCKLDETEECFVLEVSTYVATRLYESTAKLLAHPLQRPKQQDIEYRIIINDSSDDETEPEQRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GF35</accession>
    <name>A0A6S7GF35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001256">
        <property type="protein sequence ID" value="CAB3987949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GF35"/>
    <dbReference type="OrthoDB" id="5960386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="191"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26978" checksum="5DDEFD9562FA9496" modified="2020-12-02" version="1">MRAKHKCPFASCSANVVHLPRHMMQVHKWAKEDTVGIVNAFGLRKQKKGSEKSKLKRKLCPVLNCKPVVKRLHNHLIDFHEMKRGSNKYRECLKRAAPCEVIELPSESTCESSSDEEERLFQKRRKNEKKPKKREKKEKHESIFKKVYSSDDDDDDDFSGYPSIFKRPPSDKEGHCSHKLPDTCREKLPENDELPENDELPENDELPENDELPENDEMSEINFAVIDYTSIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GK11</accession>
    <name>A0A6S7GK11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077175</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002015">
        <property type="protein sequence ID" value="CAB3992288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GK11"/>
    <dbReference type="OrthoDB" id="5954773at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="421" mass="48460" checksum="315180DC52F4AA58" modified="2020-12-02" version="1">MSHFYSTPTVTAPLGRSDHHVINWSRNTDSAACLIKKGITKRKVRRFTQSSCAAFGRWCSDHVWFSDVQHPDSATALASSFTSELSSAIDLFFPTKTIKIHATDKPWMTPMLKQLIIQRQRAFHSGDRAVWLHHRDKVQREISSQKHTYYARKIQNLKNSNPRQWWNYIKQITGKEKSTPNFDITSDGVPMSDLELCGKLNEHFLSASADLPPLDLAFDRINHNILIAKLIVLGVRRCLIPWICDFLSNRRQAVKINEFRSEWAYVNGGVPQGKKLGPILFLVMINDLKMKSLNSFHWKYVDDVTISEVIKETEESRLQTELNELQQWACENDMKLNGLKCKKMVVSFLRQSDNYTPLHINDQQLELVTSFKILGLTINNHLKWNDNVAIIVKKRRNAFTSFGCCVDLEFHPLTCSQSITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXJ5</accession>
    <name>A0A6S7GXJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012419</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002541">
        <property type="protein sequence ID" value="CAB3994806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXJ5"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="412" mass="46405" checksum="FBB836DCAF871FC6" modified="2020-12-02" version="1">MESRTQELMPDFHRQSRTELVGNRTRHVITFNPNSAKPGEEIYVNIPKLKPDSVLVPASMALVFDFKNANEKSWFRNNLGNLLQKRLEIRLAGENVYDNSGESLMEVYKDLWMDEKQRADMIEDGIAAEAGIAAEAVRKKISKDDEANTDADAVALFGVFGTKQRIKINKIIGDHGLYAPYHSANDLQYVITLPQATEIMNAQSGESVEGYTLENIELEYESIENNHLARKSENLYGAERELSFEHVTLMKKTEWDKSATIVNETIDVPRRGMKAVVMLFTDKTPTDSEDYINPNIEKVKVTIEGVPNVIYSQGMTKTRMYEEAKRLFGSDANSQQSLVKFYKDKKFALVIDLRTANDEKTYGNGVKIQNTQSGILVEITKKATTANVVCYTFVLSDGVIKIANGQLSGVRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GY74</accession>
    <name>A0A6S7GY74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005712</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001656">
        <property type="protein sequence ID" value="CAB3990427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GY74"/>
    <dbReference type="OrthoDB" id="5959030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="605" mass="68545" checksum="40EF909121B0082E" modified="2020-12-02" version="1">MSYYPTTMGPKLSESSRLLPPTADAYADVKFKDLYPGKIFYKKQYRYNNMTRQLVVNDENRWINMEATTINCQLYRIYGWVKREQTAALKKKDKNGEVAIRNQDTGEILNLIKDKDTPTPIQNGFLQPFSVDLHNIYKGNDAEGIPGTPVFELSRADKERKLNIFQLVVQMEFIDGSFSQKFTSPVFNLRTLDPPKGKVLPGGKRPRVSETASPGGSVDSGTFDDGRQQKILVDMLDAKTAEVDKVVVKNLQVNGILNVNTTGADLAYHLTLKEPEKYGDLQEGDIVGFYKDEESGETYIQRLRSNNIHNALHTGVVSRSHWLAGHKPLNPATKTDTICVIGIVNVKVVGSIENGERIYASTDRPGKAIPQSHMPVGSFLRKKHALLGMALETKKSKTLDDVHLVKCFVCIVLDVSRKELLEEIEDLYQVNEERTAEQIKIASKKTWRRLKGCALSTLIIIGVIIFILYQWLVPGSMFQYWLCRQGSIPDHHLYYTYVDTNNGRHFQVHGIEFTWQGLQDKVGFKFLRDTLETKWLVHYYLNVDRCAYYWEDGAAGNNIGGRKYIGGSRILSAVKRCTIVDEMIDGNDVWTIVKNQSNVSCIPMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H231</accession>
    <name>A0A6S7H231_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025009</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001701">
        <property type="protein sequence ID" value="CAB3990660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H231"/>
    <dbReference type="OrthoDB" id="5977814at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="260" mass="28970" checksum="BF6278FF7F993F5D" modified="2020-12-02" version="1" fragment="single">MTDQTNTEQSVDLTTDNTTDLKESMASMMSEMMSVMKDDMLRQFEEYFAAPEPEANTGDVEANGDQPSPDVSDAIENYLQTPDPNSTSSTFDVLAPEFSTTDKTGPAIDDKLANIISDLVKDTLPKTKLDEVINKYPRPENCESLVVPKVNKIVWQHLKQSVRTTDSAMQKCQKLFTSTMYAIIQACEQVTGNVRTILTHALVLAMSGNREFNLRRRELLRPSLNSQYATLCNPSTPITSELFGDDISKEIDQVAKANQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2J3</accession>
    <name>A0A6S7H2J3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="20">Retrovirus-related Pol poly from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">PACLA_8A050738</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="20">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The aspartyl protease (PR) mediates the proteolytic cleavages of the Gag and Gag-Pol polyproteins after assembly of the VLP.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003705">
        <property type="protein sequence ID" value="CAB3999925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2J3"/>
    <dbReference type="OrthoDB" id="430476at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="15" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-1188">Viral release from host cell</keyword>
    <keyword evidence="14" id="KW-0917">Virion maturation</keyword>
    <keyword evidence="16" id="KW-0862">Zinc</keyword>
    <keyword evidence="16" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="18">
        <location>
            <begin position="219"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="19">
        <location>
            <begin position="490"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="244"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="17">
        <location>
            <begin position="244"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="669"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="CAB3999925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="669" mass="74944" checksum="06D10E12E10C9A6C" modified="2020-12-02" version="1" fragment="single">MASGLDVKTTSIIPLNGKNFPTWKVQCRMALMRDGVCGIVAKTEVSPSPDEAEDLAKFVARRDRALATIVLSVDPSLLYLLGDPQDPAVVWEKLTNQFQKKTWANKLALRRKLYSLRLKDGESIQKHIKEMTEIFDGLAVIDDPITEEDRVVHLLASLPESYDILVTALEANVEVPKIETVTECLLHEERKMKERSGPETNDEMKAMFANRQSKGKGPKCYHCGKFGHIKRNCRELNSLKHDGDKSEFNEGIDNKHKANTAAKSRRTDSSSDSDEGGLMVNHAFSSVNGRTNTWIIDSGATCHMCNDVSQFVKLHNLEKPEDVTLGDGHVVKATGRGVVKTKIESPNGRKGKSCVLQDVLYVPSLSYNLVSVSKATKSGKTVKFNEDECHILDESQKLIATAKRVGNLYYLNCTNSHQANPTVGYSSMGSKEVTWHKRFGHLGVQNFQKLAKENLVDGYDYDKSKDIDFCESCAEGKHHRSKFPVNESQRAKMPLDLVHSDVCGKMSAKSLSGTEYFLTLIDDHTHYVWVYVLKHKDEVFGKFLEWKALVEKSSGRKVKVFRTDNGGEYTSTEFENYLKKEGVTHQLTVPKTPKQNGVAERMNRTLVESVRSMLADAKLPHKFWAETLPTAVYLGNRSPSVAVKGKTPFEAWTSQKPNVKHLRVFGCEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HDQ5</accession>
    <name>A0A6S7HDQ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030103</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002351">
        <property type="protein sequence ID" value="CAB3993901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HDQ5"/>
    <dbReference type="OrthoDB" id="76385at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="186"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="210"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="26639" checksum="B7572E04A919BE30" modified="2020-12-02" version="1">MEIHGIEFVTVTPLWPQGNSEAELFMKPLLKSILTARTQGRNWKKELFTFLLNYRATPHSTTKVAPAELLFNRTIRTKLPQQYTSSKPIDKHIMAKENDHNSKGQMKRYTDQARHTKKTLINVGDLVIYKQQKRNKFSTKFNPAPYKVIKVHGATVTAQRHSRQITRNISYFKRLNLGEKERQYHLDDQLSDEEEDEIVRNEQDQENEEDARSNPTRDTRQFSVINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMT0</accession>
    <name>A0A6S7HMT0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002853">
        <property type="protein sequence ID" value="CAB3996361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMT0"/>
    <dbReference type="OrthoDB" id="5954387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="378" mass="42799" checksum="300C296791F34D19" modified="2020-12-02" version="1" fragment="single">EKSYTFVCSLNFKSDDIEFHRFCKKYYLKSTAVPSAFDCWNDIPHLCKPIPTPRKPNKLILKRVKEGESKTKETTCSSKTHLSAIPLNIINTCEENKSPQHDNIQFYTGFPHKQVFENVLEYLNPGENGEDIVNVCNQGTSRSNEKSEQDLVNTSGYQKVGRPKKLKPRNELGLPGKLVTFYDHVIHLITPSQHGFLRNRSCITQLVQVLHSVGQCLDKNLQSDIIYLDFAKAFDSVDHQILLRKLKSYGVTGCLLDWFRDYLSGRTQRVVVEGVPSSWVPVISGVPQGSILGPILFAVFINDLPEVISNGSSEAMYADDTKLFRNINSTTDGDCLQESLSNLDTWSHDNNIKFNALKCKVLSVTRKKYPVTYNYHLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZU1</accession>
    <name>A0A6S7HZU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085217</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007157">
        <property type="protein sequence ID" value="CAB4011464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZU1"/>
    <dbReference type="OrthoDB" id="6159421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="36400" checksum="ACB1E97A1850AB5A" modified="2020-12-02" version="1">MEIKLCAFIAEHNLPLSLADDVVKFIRSLFPLNQTLRNVMLGKQKATNVVRQVLGFDYLHEAISALRSHSYSLIIDETTDLSTAKQLAVLTTYFDMQSFEYKSFLLDMPEIVDGTAEGIYSAVKHVFAELHIPMEKMIGYSSDTTNVMFGEFNSVSQLLMSEYPNVYSVKCSCHLIHLVSSYAALKLPKGLEDLVRDIYNHFHRSSKRQEVYQQFQKFYDAEPRKLLSPGQTRWLSLEAWVNRILEQYLALEHYFVLVANEDPTHSNDRILKSLQNKFTLAYPEFLSHQIQRLMLSIVSFKAKGPFYTTSEKKLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I231</accession>
    <name>A0A6S7I231_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017863</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007618">
        <property type="protein sequence ID" value="CAB4012745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I231"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="41640" checksum="3FF32BE9DB729D36" modified="2020-12-02" version="1">MYENLLNHDPESEDPDAEKPTYEGIELKCGWKVIGTENLATSNAKSKQVLTNWVERTIEDSFKEVSTFASDLSASFQNRIETCGVTEEVGKANFFDIEEIFQLLCGERLLNDHVRVREGDLEVFGAASFELFFQEVCNLSHIKAKDDELFDERLSRNVLRQWKSAIRHLVWEKAMKNLLLSCLKPVNDNGITTAVTTDPEAKLEKMETVAQEDCKLNLHPLFALKFTSHASFQCFVDESKVASLLYTNEILYDKAGSVAMTAFDIATSIGGSEAIVESFYSVMDTQRQVRQLHTTLENRTILDWATSNVLNLEDVISKAAKLYVDGSSSLKLPRHRVGVMKKKTEKSYKASQVLTRMKSEKGRYSFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5P3</accession>
    <name>A0A6S7I5P3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A050255</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007345">
        <property type="protein sequence ID" value="CAB4012013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5P3"/>
    <dbReference type="OrthoDB" id="6627079at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4012013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="444" mass="51701" checksum="F170E4780BB77F24" modified="2020-12-02" version="1">MASHARSKFRNVLIFKTLKANWKRRQKLQNMLAMLLMRQQTFITVLALISLVLYSSTKIATRMPRIRSCRRKLRRIGWWESVWNTYSDKRFKKTFRISKATFSYILDRIKADIQRKQPRRWGFVEEPISPACRLGIALYRLGRGDYYYTISEMTGFGVATVCNITIDVSQAIVKNLWKEAVSNKFPSTLEHFKECALDMEEMWQFSALDGCHIPIKMPRGGANSAKEYHNFKNFYSIVLMGMVNAKMQFIWASVGCPGSNHDSIIFRSTSLYSKMMENYILPTFTKLIKGVKVPFMILADSAFPHLPWIQKPYTNAVLSEKQRYFNNRLSRARMVVESAYGMLKSRWRVLHRKCDSNNETMKVKTLACIVLHNICIDYGENISTNLDLTVNPENPSQKRPRDAIRDLLHMTRSRPIRSTTKSATQIRNALTEKFWREHETGVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IEM1</accession>
    <name>A0A6S7IEM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072872</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008901">
        <property type="protein sequence ID" value="CAB4015927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IEM1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15805" checksum="B671875314340B14" modified="2020-12-02" version="1">MPTDEKPIETKLRATFGAKVTPDEFEKFEAAWTVAKRANTSETNKPVRWSSPEGRANMLLAQLTDSVLVWAIRQPNEVQSNDTELLKALREKYAKIKSQEAYQQDWANISQHARWMVSSSGLVEAPRLGYQEHQPLFSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IFG6</accession>
    <name>A0A6S7IFG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TNF receptor-associated factor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A019175</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009044">
        <property type="protein sequence ID" value="CAB4016257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IFG6"/>
    <dbReference type="OrthoDB" id="6499288at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4016257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="448" mass="51807" checksum="4313C6A3128196CA" modified="2020-12-02" version="1">MENNVRFNVSKCKVLTITRKKNPIIHNYTLGSQNLTRADIKAKKILELPPHQNVLGTFTRTPSSRRPMFGVLRRTCTKLMDMKARRTLYLSLVKSQLCYATEVWSPVNSVQISRRVEKVQRRATRWITMTKRGELSYRERLLALDLLPLTYDREVRDLVYFFKSLFSYIDVNIDNYVLFGHSAVCQHALINCIHSQCKMTFQRSHQGEHLKSECEYRNVKCDFCGKDVTFASMKEHIGKICEDAPVACKYCKKDVLRKDIERHERRDCNEAPATCEYQAVGCNHDKTLKQKELRQHLNDALVNHGGQLLRYTLAVASQLSDFIPRPEYTGMLQKIQDDITEVRSGLAEKFVMVVGKLTGLERRIESLESSGGGDTRIRNKEHELQSKIRDLTTECSNLRQRNMSFEREMRDRMDQMDASIALNTATITDLESQRYPRALQAIPNISSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ILF3</accession>
    <name>A0A6S7ILF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080332</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009743">
        <property type="protein sequence ID" value="CAB4017869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5978103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00065">
        <property type="entry name" value="FYVE_like_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="entry name" value="DnaJ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052763">
        <property type="entry name" value="DnaJ_C4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44825">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44825:SF1">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="Chaperone J-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1374"/>
            <end position="1496"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1393"/>
            <end position="1411"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1413"/>
            <end position="1493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1639" mass="183566" checksum="DBF8A6DFE578D316" modified="2020-12-02" version="1">MASANVEESDEGLNYYQLLGVEQDASNEAIMQAFRRLSKEKHPDKNLDDRERATRDYQKLTHAKIILLDAEKRRKHDEDLIDTGVRNEKALPLFCSICSRNSGRHARRCLKGFGHKSPLVEEFHAAQREYQARRHSQQNKRREKAEFIKCLERVLAEFVKNEFPKLYPLEKAPNRRQQAAGNEDLPLPRFVNDVLKQCYLSMRDETNEETGAFSMPTALEVSNLLEACQLRPTRRRETTNLPSTNKFPMYDLSTLSDKELRLILDYLRLPYETTANREVLKNMANRYCPMVVLLPNLDNQSLNLSRECGWCSNSLSLMQSYFSKATSTVCFSCNKICCSNCLMGMKWKIPSSGSFDLRTICSECFRILKIYESQSWLERGIALLKSDQRRTETVLAMYRISNAVRPSDVAIIHQAKVLYAQKKYTTLVEFGKEILLDESALTKDNRTVLLYFVAESLLKVVGAMPETDLMSKVELYKDAIDWIERFNTLVDERIYNLKLKAIRMRLALLSKRDEIIKKKAAMVLSQLTQAIKEGSFLKALLVTQDEDEDNDKVMHLCWQKLLKESNENYNEYSRLLLRLFKAIAQHEQGNSTAAINEVADVFWSGYELFQSQDRSIPIVDYVVQFTSQLILKEASLPLKNVAGINVSNFLSTLQLTEEDLINPPDIDDRKWGNLTVEGCDMKMFLKYETAVKKLVEKKKWMPLDAAFAYHDLLTACQHPAQLLFTIITSAQWFTRQISCSDSNDSCLFACKKMITKLTNLAAALAFEFSTHPYMRYYVAKLVIALQFFSSLKTGHEGQETANFIGVHMKWLVATGRHCPLHKMPTVTPTEAVLMSIISTKLHCEYLLKLQDAIPAELRPMSEAIMRYQIYENCWFKRGEIVDPTDGGLRLTSMTALLAEKKWSWDDVQRRLVSNMIALDRNGWQIVNGKLMDAVASSNIQRLVGLEINKKDFGIKVLVEQSSRLNAFNRQPALLSWGDIAGGLSLSQAGSFFSLEAVNPQETPYHPFNKLIYFPEQLEGTEMLFTMLHTDYLLKQFSMGHEIQSHPPFQLRPVSEGLLKDLPDDLKEALCSIPSRGASRNRVHRLWIQADTMQFDVQETGDTVRWLFGEVKITVRCMPMFHGEDGELKDLDIDGLDPDSPEGRFVEDFTKNYEKIGKHFPAFLRLKELCKVQWLGQFLDSFIDGVEDHKKQVESGKLDSEIRRIQASALQEAEVSIASNLDKARNSIRRQVSYINDNVVSQVHRQGDISASYSEISHWLYTGNSCDIAKKIARENAPSLNEIRRRIVEQQKESLRKCTNAIADLRKSSKKFLLASNKCKWIPAVNHCQDEDEFTRFHYGGVSLTPKAVKTNLSTPGFFSGFRKVSLTPGLLSNYAPKKQQPPQAFNPPIVNATKPSTGMQQNSANTRNAQASGKGGGGGGFGGPSAGGTGAGGGGHGRGGGSRGGGGGSGGGGGSRGGGGGSGGGGGMGGGGRSGGGGGSGGGAGTGGGGRSGGDSWEKVTKVLEKACGVKMGTQIRMDKKSPKARQYVKPLSPGKSDWETALSDFNFTIGKDAKVRAGKTTAQGSGWDSFESSLQKIQRGEKPPRDFSLVHSKIVDGQEWSVSVRSSSEDKRPTLEFYRKGIKGKMAEKRIKIRFGDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMG3</accession>
    <name>A0A6S7IMG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">THAP domain-containing 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A065138</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010107">
        <property type="protein sequence ID" value="CAB4018653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMG3"/>
    <dbReference type="OrthoDB" id="5971057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4018653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="26902" checksum="7E5AFD026A3185DF" modified="2020-12-02" version="1" fragment="single">AVQINEDSNSCENSCTSSLRLNNSESQCSSQLSSSNFTRRSGGAGGYTCCVPDCSSNHKRNPELSFYSIPSGKSKESKELRKRWINLISHRDFSPTIGHRVCSLHFPGGCKTYLNQLPMIVPKATRPTPTKSRSTGKARNRTLLVSSTKSVPTKRRLFSELDNNNNLSGSIEPNKMATLAVNENIDPIACLQEQMAKLLATNEKLKEENGRLKNENKCQKDEIRGLTEQLEEEVKKKTFFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPK7</accession>
    <name>A0A6S7IPK7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086373</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010547">
        <property type="protein sequence ID" value="CAB4019606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPK7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="6551" checksum="3AE446B28F51635D" modified="2020-12-02" version="1" fragment="single">VRKTLVTGSVPTENLPEKIHETPRRERRSLVKKGDIAVFDQPSTSSQPETQNSDIDDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXL2</accession>
    <name>A0A6S7IXL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Latent-transforming growth factor beta-binding 4-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A025340</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012108">
        <property type="protein sequence ID" value="CAB4022707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXL2"/>
    <dbReference type="OrthoDB" id="5982925at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048513">
        <property type="term" value="P:animal organ development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048731">
        <property type="term" value="P:system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000202">
        <property type="entry name" value="Multiple epidermal growth factor-like domains 8"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039:SF28">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039">
        <property type="entry name" value="FIBRILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 11" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4022707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="434" mass="46857" checksum="739B77309E80C24D" modified="2020-12-02" version="1" fragment="single">EEEFLGLECYSENLFQETSLYIDECSLGIHKCHAQASCININGSYRCECLVGYSGDGRMCKDIDECSLGIHKCHAQASCTNTNGSYRCECLVGNSGDGKVCKDIDECSLGIHKCHANAVCINTNGSYRCECLVGYSGDGKMCKDIDECSVGIQKCHIQARCINNNGSYHCECLVGYSGNGKLCKDFDECSHTKHTCDANAKCKNTIGSYLCECSSGFLKDGNICTDIDECSLGIHTCDVNANCKNNIGSYQCQCHTGFSGDGSTCIDMDECFLGNNKCHAKAKCSNTAGSYHCVCLVGYSGDGNICKDIDECSLGSNKCALNAKCKNTIGSYLCQCHTGFSGDGNICKDLDECSLGSYKCHAYSKCTNTIGSYKCKCLGGYYSVRDICKDVDECILDSHICHAKANCTNTIGSYQCRCHTGYSGDGMICKDVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXY2</accession>
    <name>A0A6S7IXY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065793</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012179">
        <property type="protein sequence ID" value="CAB4022827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXY2"/>
    <dbReference type="OrthoDB" id="5984863at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027197">
        <property type="entry name" value="SLC43A3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20765:SF1">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOBASE TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20765">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13385" checksum="46F67A4338D2CF04" modified="2020-12-02" version="1">MSSGFEFGDWIFLLTSMFETLMFCGFQTGWSSLVYVLVEEGIYSHLCIDENPVISLQWNSTNSSSHVQPIRNATENNNCIAQQEMLNLAYTLATSVSSLAAFPIGVAMDCIGPRFTRIISG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J7B4</accession>
    <name>A0A6S7J7B4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015139">
        <property type="protein sequence ID" value="CAB4027935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J7B4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4027935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19573" checksum="599E42550FB778E9" modified="2020-12-02" version="1" fragment="single">MRTTADSDSATSDSDVENSYNTDNEVETDFASESDFDNADDTSSEVCDEYENLGMKGIIVDVAINSTGSIQIENDKKSVEENLRQPRRFVLPEGTQVVTIKARRDYTTPGGILAFFSDGNVTDTSWSCIDCSQFQCFDECIYACKSCSKSNWEKPSKTTLNTISFPKIASSAQWIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAQ0</accession>
    <name>A0A6S7JAQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016734</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013958">
        <property type="protein sequence ID" value="CAB4026020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAQ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="13822" checksum="7EF162A8C721E371" modified="2020-12-02" version="1" fragment="single">MSKEGEWVRLKAETESVNDITDKLKMTSLLPYLTGTISPSTSLASPDATDMWTPSNATLLNYSSSSCEDQSTPSTTDVYNESMSHLASLTSFKEISTLSFRLTSSWDETTQSEKEACIEKASEACQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JDQ9</accession>
    <name>A0A6S7JDQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052304</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015903">
        <property type="protein sequence ID" value="CAB4029047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JDQ9"/>
    <dbReference type="OrthoDB" id="6082704at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="18845" checksum="ABA6129EDBFDBBE1" modified="2020-12-02" version="1" fragment="single">PRSFAAVASGSNEDNEQVTIVSVTDCEQSEGQINTALVNDDDSNKGESANDPGPPSNNIDCPKQSQVIRSSKTSENQNEASLVDSKEFIGVERRNTKRLYLGGVKDGVHASTIKEFMQGKGVQPTFVRMMKSRRSGTVAVRINVRVSDIKEILEPCKFLAEKCIRKGMALQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEG7</accession>
    <name>A0A6S7JEG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058269</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015721">
        <property type="protein sequence ID" value="CAB4028781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEG7"/>
    <dbReference type="OrthoDB" id="5986931at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="112"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14417" checksum="35071C56A2AC3718" modified="2020-12-02" version="1" fragment="single">VLTEKGKGYRKDLMQRELTRTFKLWRKELENAESALADTSDISILQQRRNALEAGMSSLTVAHDNLVNLLSTAEIDEFTKRHDAWYKEYREIFKALNSKILEIRSERDEHSSIISGRSKSSRASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGX4</accession>
    <name>A0A6S7JGX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A081806</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017725">
        <property type="protein sequence ID" value="CAB4031556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGX4"/>
    <dbReference type="OrthoDB" id="10067249at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="20"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4031556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="32059" checksum="D4963A53E244AC17" modified="2020-12-02" version="1">MASFQLLLSAGDIELNPGPDSDSSSQQKNKQQRTSRSFSRICTECQKTVRKNQKRFVCDVCKDFIHASCLGVAYTNNLNSSQPQCWTCHKCVLSKLPFYGHDILEIISVNSLTSDNDNDTHLNILSKHVQHLKIMHINTRSMVSTFDHLCLMIERYAFDIITMSETWLKENNLLLQHVTIPGYVHAFNNRDKIRGGGVGIYIKESIKFKRRQDLKKRYPTMEHLWIEISGRNRYSKLLLGTIYRSDAILPYTTWLEYFNDLLSDLSVQWDGMLAVTGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIC6</accession>
    <name>A0A6S7JIC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">P53-induced death domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044242</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017193">
        <property type="protein sequence ID" value="CAB4030867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIC6"/>
    <dbReference type="OrthoDB" id="676979at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000906">
        <property type="entry name" value="ZU5_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00791">
        <property type="entry name" value="ZU5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="539" mass="60876" checksum="E2AD0DFAFAF5A0FD" modified="2020-12-02" version="1">MCSRLKLKYKECEVKPRDGEVFVSRILKIEPEGVKFKKPVTVLLSHSLYEDQDFLYFYELIVESLSPTGWQELKTERISSIKDVPKEIPNKKILDDYLPFAKATIHETYTLVAATRVRSDQILIPTNERYTFSKQYGDKTELNITFPAGVTEKTLILAVQLFPARAVLNRDIRSDKNLVCVPIIKVSGQKTPFFKAVDIELIYSHSDVSSIEEEFLPVGKRVKFTTEYGLLLRSHRETESKSNWQALNESNDVYIERSRKDQLKFAFSVEHFCYILSFVKRIIGSILPLWSSGMVETNNPACHSAIALAVHKTDSSPKTLRAVLAPAVALSDVKTSWNAETDKIRKFDEPLKSKEPIYFCVPLSDSHHLPLKDHTLRFDPDPVFPLVLDNNTDDNLNGKYMHFLTDRDCNNGENHSTQGDCHAKAPIHISETRSVQARECHELVLGSESPQDSTPSFEQKIISINDLSVDACRVGRVTSVTPYGAYVDIGVRGREGLLCEGLLHKSEFPSSKDLETGDTYSVVCTDVNKTGNLIGLRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPC1</accession>
    <name>A0A6S7JPC1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079493</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020099">
        <property type="protein sequence ID" value="CAB4034425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPC1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="16014" checksum="A37962DB88E6BE75" modified="2020-12-02" version="1" fragment="single">INMLDLIKACEAESELDFLQESFVLTDEQKEAVLQQRIIFWTNAMAEDIERENPIGVDPDMMANWTEDQRRLFNEDWANDDGLCELEQISEPPENQIGEGSKRRHASDHAPSKRQRPEEYFTIKSAKQVNVRKFRTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JWK2</accession>
    <name>A0A6S7JWK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032366</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021079">
        <property type="protein sequence ID" value="CAB4035468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JWK2"/>
    <dbReference type="OrthoDB" id="6382611at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="124"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="126"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="240"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="289"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="34997" checksum="C684DDB0AAAAFD3C" modified="2020-12-02" version="1" fragment="single">MVSTMRLEELEQRLLDLRSFLTNIGKGEGPTERYDLYAAGGKARFNLDGNCPMGKFSNDQHDLMCSTLAVMFSGECSPDYVCKVIFPEALIRIYMDVEGCEYKKAEDDLFPIKLSQETEDPFIQQFAWQKPSTPRSEGEDDDDRDDDDDRDDDDDRDDDDDRDDDDDRDDDDDRDDDDDRDDDDDRDDDDDRDDDDDRDDDDDRDDDDSNYEEEVEEEEEEVEEDEVEEEEKTEGESEGDSEKRDKRKHTEGESVERKKRKHTEGESVERKKRKHTEGESVERKKRKHTEGESVERKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYE0</accession>
    <name>A0A6S7JYE0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054502</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020016">
        <property type="protein sequence ID" value="CAB4034320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYE0"/>
    <dbReference type="OrthoDB" id="2419425at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="43630" checksum="8A902C85E70BF60B" modified="2020-12-02" version="1">MNTSNPSIPISDREFASIERMKTNVLKKARERGLKIEEKIKNHFDELLKKEKRKAIGKEVKTVARQFQRRRKQTEADARKAIKDTKKWKSDITKEEKRRRKEVTDWKAEAQKWKKESQRLRRNAWPRERRAEENRRIPEGKWKGKKKFARLQLKLGDKLSKIWDRSREILKPILAKHAIKKKVKKYVINPKGAYDPSYFLTTTKDEVKTEPRNVRMSLACEMVRSDPKTWEEVSTIAHFGSKNHKLIGTDDMEEAQSIMREKILKSFSEYQRRGSGWRLRKVTQLEIHIGELQHFRGKKHEPLPKSMVKQPKELNWEGTEFPTPLNNIKKFEKNNNIYVNVFSADESLKVYYPLRVSGKTNPIILTQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0J3</accession>
    <name>A0A6S7K0J3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deleted in malignant brain tumors 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088908</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023389">
        <property type="protein sequence ID" value="CAB4037707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0J3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.220.10">
        <property type="entry name" value="Hormone Receptor, Insulin-like Growth Factor Receptor 1, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00530">
        <property type="entry name" value="SRCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00202">
        <property type="entry name" value="SR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="125"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="33947" checksum="5C167C7049949DC6" modified="2020-12-02" version="1" fragment="single">MRCSDMCKTCLDGFSNGRCSSCDKPYFLRGSTCVETCYPDHTLEDLMGGETPSGNIRLVNGSNDREGFIQMRTKSQNNYKWGIICNTNQVITTLVCQELGFQSGSLVRYNRLYSFARVPIFQVSCNGYEKYLTDCNLHSAYYCARPFIACSNKPLDKRVCRKENTIPCASGVCFSYPSVSCANGDGKVVPKGRSYCKHCPPNYYGDGVNCQAISKVAPSVRQTYIEHQLRLRATYYFPCFGRSGTLYIYPNRKSWFKDEKNVDVSSGRFRLGPVQYEDAGIYKCLLGNSMGSVTITFNITIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K581</accession>
    <name>A0A6S7K581_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">KICSTOR complex SZT2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074157</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027058">
        <property type="protein sequence ID" value="CAB4040635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K581"/>
    <dbReference type="OrthoDB" id="43547at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033228">
        <property type="entry name" value="SZT2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14918">
        <property type="entry name" value="KICSTOR COMPLEX PROTEIN SZT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14918:SF3">
        <property type="entry name" value="KICSTOR COMPLEX PROTEIN SZT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13134" checksum="C301F39E5ADC6027" modified="2020-12-02" version="1" fragment="single">VLVEGCLVTQDNVELFLSSVYEQLQQMENKNAGVVQTISHQNCEGKQLYSHVTSELSIVAMLKMSILALELLPGSASGGIVIISDGVFGLPNAAMVHALLAQLRSHTVCCSFVKVGSPFQAQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K628</accession>
    <name>A0A6S7K628_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027549">
        <property type="protein sequence ID" value="CAB4040965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K628"/>
    <dbReference type="OrthoDB" id="6269447at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="61" mass="7105" checksum="098C05DA350D0672" modified="2020-12-02" version="1">MKGTFNIGKQEVLLKDMNKKLQRMLEETLTKNIQMQKDMDILTKEQESSRQGQSSNESDKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8G4</accession>
    <name>A0A6S7K8G4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025719">
        <property type="protein sequence ID" value="CAB4039681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8G4"/>
    <dbReference type="OrthoDB" id="411823at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15927" checksum="E9AB9F330E85408B" modified="2020-12-02" version="1" fragment="single">DIFADDTTMSACAHYLDISSMNDSLNSDLHALNEWSLQNKMFINARKTNSMLVTWKRIPKKLNSQNDPCLQLKIDGVDVSGVASKKNLGITLDSKMSYETHVEELAKKISKRLGLLKHISPYLKQHQRETFYTCVIKPTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K967</accession>
    <name>A0A6S7K967_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Carbohydrate sulfotransferase</fullName>
            <ecNumber evidence="9">2.8.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A015874</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Golgi apparatus membrane</location>
            <topology evidence="1 9">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the sulfotransferase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.2.-" evidence="9"/>
    <dbReference type="EMBL" id="CACRXK020029722">
        <property type="protein sequence ID" value="CAB4042226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K967"/>
    <dbReference type="OrthoDB" id="2019940at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016051">
        <property type="term" value="P:carbohydrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018011">
        <property type="entry name" value="Carb_sulfotrans_8-10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005331">
        <property type="entry name" value="Sulfotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12137">
        <property type="entry name" value="CARBOHYDRATE SULFOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12137:SF33">
        <property type="entry name" value="CARBOHYDRATE SULFOTRANSFERASE 14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03567">
        <property type="entry name" value="Sulfotransfer_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="8 9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6 9" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="23"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="51"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4042226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="39736" checksum="3784A55E1710CE72" modified="2020-12-02" version="1" fragment="single">ETTKTKNGTAVSSENSNSTQSEVGKETIVHTTSNEKEVVPHATTQSSLDVEAEKDSKRRRESINKVCHKRNVTNVLEPLTDRRDRERARQRNTVLRHLVVSEKYKVIYCYIPKVSCTNMKRIFLVLEGLYPSVTQVEKLDLQIVRLSNPKFTEEQRQYMLKNFYKFVIVRDPFERLVSAYRNKLQRMNLGYWSPLVKQIIKKYRYNNTETNITGLDVSFTEYVRHLIDNPPWTLDKHWMPYEDLCHPCHVKYDFIGSIDNLDRDVTHAMRQIHANETKHHVIRNSCARTKTKQTLAGFLKELSRKYFDQLLAVYKTDHELFGYPLPEYDTLDKRYPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEI1</accession>
    <name>A0A6S7KEI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073578</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014304">
        <property type="protein sequence ID" value="CAB4026613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEI1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="49"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="21856" checksum="F9113BDE7686A865" modified="2020-12-02" version="1">MAEDGEVSPALSLNVVDAVATVEDNELTPSPTGLKGKQRATKRRHSETSSSSKSSSSSSSSSSSDNSDSDKSASSKDGDYKRRKKRKSSPERKATPKTQATRRDTSPDPGSDVDVYVRFDTDNTTSEKLVLPKDMVKYLANKFTSYVPDKDIQETVLELVQTLCRIFNAFKPQRLMIILGKYLKLWANLTAKSRIIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLF4</accession>
    <name>A0A6S7KLF4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nephrocystin 3-like N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A063618</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042095">
        <property type="protein sequence ID" value="CAB4045807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLF4"/>
    <dbReference type="OrthoDB" id="163438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="2">
        <location>
            <begin position="94"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4045807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16308" checksum="C49544BBDC4C9582" modified="2020-12-02" version="1" fragment="single">IPQQEIDELKKIPLSPEEKSYIEKLKEWKELEDVLLEKIKDVEAKVSKVEDEVVSIKDEVVKQGEFLRPSKVEQLAKFDLSGKINGLREKFQDGTRKWFFNKLSNWFSDKNRESRAMILTAGPGVGKSVLSAKVCELYKQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KUQ0</accession>
    <name>A0A6S7KUQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075843</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042409">
        <property type="protein sequence ID" value="CAB4045840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KUQ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15770" checksum="E0DB7DCAE194E79B" modified="2020-12-02" version="1" fragment="single">PSTAVMVSTVKYMASYLRKRKRQDPLPMCWRTEEPTRRAEILIKLEKKSIHFYDGDLYKIFVDDHSHRDLINCPCSAKKKITGAFVGQRCSRNGVRGPLVIRKLGSTASSKVHHVLIWHIGLESLQTVRQMMFEATQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LH07</accession>
    <name>A0A6S7LH07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024683</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017967">
        <property type="protein sequence ID" value="CAB4031899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LH07"/>
    <dbReference type="OrthoDB" id="5959160at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01450">
        <property type="entry name" value="vWFA_subfamily_ECM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050525">
        <property type="entry name" value="ECM_Assembly_Org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020">
        <property type="entry name" value="COLLAGEN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24020:SF87">
        <property type="entry name" value="COLLAGEN ALPHA-1(VI) CHAIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00453">
        <property type="entry name" value="VWFADOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31922" checksum="0FB8C7127E3E5813" modified="2020-12-02" version="1">MQYKKGLLMGLGLFSCIEAAMEKYLLFPFLFGAFLGISWCANIPNDLNDGLTEKRFWFNKPIKPKPTSTKFDVVFLLDSSNSVGRYSFKTAKRFASNLLNYFSIFPAKTRVAVASYNGNVTLHFDFNKYANKDCVERQIKNLKFQDGSTDIGKALEYVRTDLIHNINNGARNKAKKVIFLFTAGRNGENALDPIKPALKLKQKGVKIFVLYLIGQSRFRNAGYRNRFRHRLGKWRTFYLLRKIVSGSSYLLSARSYAAFYRVMALLRLGKRIVLWFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LP56</accession>
    <name>A0A6S7LP56_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025668">
        <property type="protein sequence ID" value="CAB4039632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LP56"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="16238" checksum="3E1CF2EB8C444759" modified="2020-12-02" version="1">MTTLIARANKTSTGTDEPVWSPLTVGPGANTLSSTTNDETLGNCTESNATVSLPTVSTTDDNKSPITAATKSTSLPATEVEAPTSAIVDKEVTGAAGATATEIAGTGAEASGTDQLAHPTTEQLEPLKDTWKENPHRSPRCNGTGSLIHLLLLIVAVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTP4</accession>
    <name>A0A6S7LTP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A064189</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031070">
        <property type="protein sequence ID" value="CAB4042899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTP4"/>
    <dbReference type="OrthoDB" id="6075221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="157"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="308"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="225"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="162"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="310"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="44101" checksum="64AA32F0321D0199" modified="2020-12-02" version="1" fragment="single">RYKIKNFKNTNAKRVPYEEIDYNIYKSSHVDFSTAEKRLPIWIKALFCRYHENGGINNTKIITRWREQENQDNPSKCDKISLSFHTKENENVLTITVNVTAGRVKAQGRFYKEWGAKEFDQLLAMVNLPQDTWKVDNIKPFVESILKEDNKIDLQPLEKTKQALSEESTTPNTPRNKTFSQMRLQLANIEAEFVLHRENTKQTISELSQSIETNDKEIVSLKNTKKEKQQIISDLTLKLLQMEENINALNKRCKRIEEKNSNLQQPVHKIQSESCAEKCTWASMSPPPPNTTEEYSIPTSNTFDLLTDDAANKGDNTNEHVELESKGNKEENVEDGVEQNDNIQQDLLPLSNQTQVHNPKLKLITKSQSTQKPSSYVTAMVDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D677</accession>
    <name>A0A7D9D677_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">THAP domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000045">
        <property type="protein sequence ID" value="CAB3977408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D677"/>
    <dbReference type="OrthoDB" id="6616463at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="28831" checksum="D12CA9D968F9FE56" modified="2020-12-02" version="1">MTQDKGVQVQPFIKTFKTVGTQTEHLHMQGNTKIHPDDIKKLCHLEDHSYSLGPNNNSSTDDNKDTVEPCTTPCTPVTEEQLTLVECDDVQNEATILFPVVQHTWITSQNALVKKLKQSDSVDVCGDGQCDSPEHSAKYGTYILMDEKTNLIIEFSLVQMTEVTSSNAMEYEGCKRTLNSIIKKKIPIRCLTTDRHTTITAKMRTNYSNIVHQYDVWHPSKWVTKKLSKKAKKKDCQELLPWIRVFPTIYGGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBN5</accession>
    <name>A0A7D9DBN5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Elongator complex protein 4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A031014</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="3">tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the ELP4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000380">
        <property type="protein sequence ID" value="CAB3981357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBN5"/>
    <dbReference type="OrthoDB" id="289162at2759"/>
    <dbReference type="UniPathway" id="UPA00988"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033588">
        <property type="term" value="C:elongator holoenzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008023">
        <property type="term" value="C:transcription elongation factor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002098">
        <property type="term" value="P:tRNA wobble uridine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19494">
        <property type="entry name" value="Elp4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008728">
        <property type="entry name" value="Elongator_complex_protein_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12896:SF1">
        <property type="entry name" value="ELONGATOR COMPLEX PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12896">
        <property type="entry name" value="PAX6 NEIGHBOR PROTEIN PAXNEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05625">
        <property type="entry name" value="PAXNEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0819">tRNA processing</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3981357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33470" checksum="203750B1573CE0B0" modified="2020-12-02" version="1">MASSFRKKSHRGRGSYPAGTKISLHNNQLLISTGVPSLDGLLGGGLAVGTVLLVEEDNYACYANTLFKCFLAEGVASRHSLFLATALQDPHEIWKNLPCAVDDLNATSKVPPEGDNSMKIAWRYENMPKVESNPTAVKFGHFFDFTRTVDVARMNKVSKYEYRSRDNWSEEAEKPSSRSRSLLNPEYQNLLNSIKKVVDENGHSTSNKELKDGTILRIAIQSVESPLWCNHGDDDYSLTVFLYYLRGILRFSYAVCLITLPSHISQVPSSFCTSRKVLNSCFYCCAIRLKIYTFVKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFW3</accession>
    <name>A0A7D9DFW3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tetratricopeptide repeat 28</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A087693</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000491">
        <property type="protein sequence ID" value="CAB3982350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFW3"/>
    <dbReference type="OrthoDB" id="10006270at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001965">
        <property type="term" value="F:G-protein alpha-subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005092">
        <property type="term" value="F:GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000132">
        <property type="term" value="P:establishment of mitotic spindle orientation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052386">
        <property type="entry name" value="GPSM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954:SF1">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13365">
        <property type="entry name" value="Trypsin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="14"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="701"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1076"/>
            <end position="1099"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="8"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="95"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="701"/>
            <end position="711"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="712"/>
            <end position="724"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1080"/>
            <end position="1089"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="1090"/>
            <end position="1099"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3982350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1150" mass="132566" checksum="72B9B9340BB85F94" modified="2020-12-02" version="1">MEQENGKKQQLEGYNNNYQMTIKDYEQALEIAKERKDQAQETTAYLNLGEAYRFYNQFETAIKYYDQALEIAKERKDQDQETTAYLNLGEAYRFYNQFETAIKYYEQALEIAKERKDRNQETTAYLGLKNQFQTAIKHYEQALEIAKERKDQDHETQACLNLGLLYRLKNQLQTAIKYYEQALEIAKERKDQDHETQACLNLGVAYRLNNQFQTAIKYYEQALEIAKELENKQKGIVARNAIEELSRIADLDAVNDDYNTNCDQNSNSLGDAQLQHKSVDSVNQTDIENGSISDHKIASAEQLLILGRSYQTQGRNEKAVKSYDQAVLIADETNHNYIKARAYQLLGNVFTGTSEYIKAIEYYQAARQIYPGYEADEMEVIAYQWLGYNHLQAGQYQESIEYYNEVARLASQLECKTREINASIGLGSAFSYIGDLESSEKYFLKAITVAKQLNHKGLKKVAHTNLGHVQYKSCKFNAAVKSYLKAEEISLDLADRKEDANACHMLGHTFQQLKKHEKAIKSYKKALSINKEIKNKEMQGVCFEKALEGIINEWCGYCCLFIAGQHQEAITFYENAKEIAKQVGEKYQEYRTNQAIGNIFCNIGNYEKAKEYYQEAWTVAVELGDRHCEGTSCLNLATVCGKDCDYKMAIEWYEKALYIVRTHVNDDILKEEALTGLGIAWFNLGDTKKAIDEIQKAQKLAKDSDTGERNVHLTHQHKRSRKKMLSSQTPDAIEDKESENVVMCEEKEPVITGGRERAEALMEEACNPSRTERLHMKDLVLIKKYIEISASYVYSRQLSTKGPFTEKVRKAMTEDVKKSAYTNLLTKNDDKRSKNDGEFVNWDGQVFNFAKSEVFKNSSTQMPARLNEHLVSYMKSIGQIACGRVRGTCFLVTDMQVITNYHVYRMIKDERMEVGNPNLPITVRFDYLYPEQTEHIVTVEVDEGHHTTLENPSLDYKFLRLKQSEGLTDRVPLGPMVRNWQLSDGRVVILGHPECKEMQEEVCVVVGYDAWLDRLNERYKQCSGVHMTNSHLLWNDTKYQDHLPYETTFFRGSSGSPVIEMNGNIIAMHTQGYVLDRPNENSPNQQENVSHQEHQDISRQRNTTAYSLMEFGVQFISICRDIRRWHGEDVVKLIFPNYELKLSEQPVDAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DQA8</accession>
    <name>A0A7D9DQA8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Werner syndrome ATP-dependent helicase-like 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001793">
        <property type="protein sequence ID" value="CAB3991128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DQA8"/>
    <dbReference type="OrthoDB" id="5982998at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2410.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="403" mass="45583" checksum="4753E670B5DD1965" modified="2020-12-02" version="1">MLLKLSGQGAVYIRSNVKLASGSDSDHSDNDDFLEPSIAAVKQDPEILEIPSESDIEDAVMIEQAVGIAQSVPESAGVHAHIVDEQTQTNEPFPESTPLIDIFDEQNHDNGFDGSAEKGEGVCVARDVLASFWQVFVDSLAVGVQEKVPSIRHDHQKMQWVAIVSILIYGYLREKYFPISLSLVKKESLTNHDLLQSFRMYISDDERETFDKCCNGELSPDDEEVLELLSSYKCHRIPNAENIRLIFSELAHQELIQKPKYVVHCWAPHIQTLKSFPPFQSTEVLKEMYDEKRPSSRKVIKLLNFVPTNYAENQCLDHLKRYIKSLQGQSLTRFLQFTTGSDIIVTEQIKVNFVAAQGFARRPIAHTCAPLLELPSTYQCYNDLAEEFSNILADKLSWAFDIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DS37</accession>
    <name>A0A7D9DS37_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021652</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001580">
        <property type="protein sequence ID" value="CAB3989988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DS37"/>
    <dbReference type="OrthoDB" id="5980705at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="492" mass="54662" checksum="CF44B0A88EF083CB" modified="2020-12-02" version="1">MLSVLGFDVQLSLSNVSYGSIEKFVKTLDIGCVCQIPDVSGVTRTITGLVFMIMDLNLKLPHLCRQLVWFKGNTNHFIFQFSDDGAPETSQLSMSIGSLTLWNLGQRVRSRQFQYLLHCVSLNEKHDALELLWQQHTEEMLLLEASVFTVSGKECTLEFQPSADMSWQSWACNELNRAATYPSPYANVHKGNMDTMGGSIGYSSTDLRKPCDSSDREKHIFMVSSYLASLSKSLTASTLHTKKLAFMAEHGIRQLGSPRIGLFADRVKPDPLHCEINAWQHVLDLIYSESVRRCAFDKFIQTLSAPVGVCPRISTPPDTTEIDETAGSAEYAFDRNDNLERAGSESASLSPEMSFQPGISLVEMSKKAASANMSTMLETSTTSLSSSPSDIYGCGLSYLSTKVAEHYGDEKKRFNKLSVRLIGSQAIALAQYGYRLADCLQTACETEGEKVRRLALGKIMQHLRNAGGLFNKIYVNNPGDISQLEEFCQLYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DV20</accession>
    <name>A0A7D9DV20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002270">
        <property type="protein sequence ID" value="CAB3993491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DV20"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12781" checksum="5C0FFF856B5B96BB" modified="2020-12-02" version="1">MLVRGAYMQIENAAWKSAALRKQLQIVALKQIDSECNGLCLTKQPSCLRSPNKDKLLDFSLEKFEKELEKRAPFTHAILETACVNRRNHNIRGEWVPWYDSSSSLEKPIFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E0T9</accession>
    <name>A0A7D9E0T9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002782">
        <property type="protein sequence ID" value="CAB3996026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E0T9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="80"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14355" checksum="0EE70AAC7D7F84C2" modified="2020-12-02" version="1">MVTSCKTPLLGSFEQSFAKSNALKSNYSERMTDHRERTAGNRGTTVDYWNNTENNREMTVNNCQQIAEESFDESNDYRSRATSSSEYSVSSNSSIKSLEELLSDLMNTDIYYGSYIHTAIENINFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EB72</accession>
    <name>A0A7D9EB72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">c-Myc-binding -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A051746</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AMY1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005222">
        <property type="protein sequence ID" value="CAB4005505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EB72"/>
    <dbReference type="OrthoDB" id="524165at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd21937">
        <property type="entry name" value="ZIP_MycBP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.1060">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026060">
        <property type="entry name" value="AMY1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13168">
        <property type="entry name" value="ASSOCIATE OF C-MYC AMY-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13168:SF0">
        <property type="entry name" value="C-MYC-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02028">
        <property type="entry name" value="CMYCBINDINGP"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4005505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12330" checksum="858839C1FC5171E0" modified="2020-12-02" version="1">MNQTQYKVADSKREEFRKYLEKAGVLDAITKVLVSLYEEPEKPTNALDYLGQFLQSGPPQTADVEELKLNLEQIQNLNAQLTKENEELRQRLQQYEPAGDDQVTQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBJ4</accession>
    <name>A0A7D9EBJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleotide-binding oligomerization domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069751</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004871">
        <property type="protein sequence ID" value="CAB4004330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBJ4"/>
    <dbReference type="OrthoDB" id="5984319at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955">
        <property type="entry name" value="RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955:SF69">
        <property type="entry name" value="REVERSE TRANSCRIPTASE_RETROTRANSPOSON-DERIVED PROTEIN RNASE H-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18566" checksum="373B10C33941476B" modified="2020-12-02" version="1" fragment="single">LSHVAIPCCLRLANPNKMELHLFSDASKDAYASVAYLVCQYEDDSPTSRLVASKCRVAPTKAIPRLELMGAILSSRLAQSLLKVLTVDRVIFWTDSQNVCHWVRNHSRQFKPFVANRIAEIQRTTSPEQWRHVPGIQNPADLATRDITIDSVSKRLQKLNVSKAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGJ1</accession>
    <name>A0A7D9EGJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Alpha-1A adrenergic receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A034113</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005840">
        <property type="protein sequence ID" value="CAB4007581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGJ1"/>
    <dbReference type="OrthoDB" id="5963071at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050569">
        <property type="entry name" value="TAAR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249">
        <property type="entry name" value="HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4007581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24683" checksum="C31ED126EE5F6391" modified="2020-12-02" version="1" fragment="single">MANNNLTESVVTYILLPSVVFKFTAMIIGVVGNTTVIIYNIFLSKEKTITSYLVGNLALADLLVCLTFYPVWIIEFIQTILNIDSDQDLFCKLSRSSLLALLFVSVATLLAITIDRYIFIAKPLKYPLIVTQERVRNIVAAIWLISCGVLCLTAVYFKKPRRQPKRSYCQVLDEIYWPCEIVILYIPIIIIFSLNLKILRIARNQKQRILQETANV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJZ6</accession>
    <name>A0A7D9EJZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007463">
        <property type="protein sequence ID" value="CAB4012312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJZ6"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003006">
        <property type="entry name" value="Ig/MHC_CS"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00290">
        <property type="entry name" value="IG_MHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="12055" checksum="A9901185B60ED7AA" modified="2020-12-02" version="1" fragment="single">LRRFGLDAGDLKCFYVASIRSILEYSCQVFHYGLPQYLSDVIERIQKRALRVIYPQLSYQDALDMLELKTLSTRRGDLCKKLFNSILDNEDHKLHNLLPPKPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAC4</accession>
    <name>A0A7D9HAC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025396</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000128">
        <property type="protein sequence ID" value="CAB3978605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAC4"/>
    <dbReference type="OrthoDB" id="20273at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061578">
        <property type="term" value="F:K63-linked deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd20380">
        <property type="entry name" value="Tudor_TDRD13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003323">
        <property type="entry name" value="OTU_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049770">
        <property type="entry name" value="OTU_Tudor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050704">
        <property type="entry name" value="Peptidase_C85-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12419">
        <property type="entry name" value="OTU DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12419:SF115">
        <property type="entry name" value="PROTEIN OVARIAN TUMOR LOCUS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02338">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50802">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="181"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="359"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="746"/>
            <end position="777"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="874"/>
            <end position="918"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="962"/>
            <end position="1006"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="380"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="430"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="463"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="490"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="746"/>
            <end position="761"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="906"/>
            <end position="915"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="968"/>
            <end position="996"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1006" mass="116538" checksum="DD488A8906AD5EDF" modified="2020-12-02" version="1">MERRERKKDLSTNMNHEAAMDSFLDLLGLYRKPIAKDGSCLFRAVAEQIFNCQAEHTRVRKECIEYMKKNEDRFEAFVEGPFDHHLFNLRSQKEWAGQVEIQALSMMYKCDFLVYKDINSVPIKATENDYEKKIILCYSNGNHYDSIYPHSHKNNLGVCQSIVFELLYGQVFPLLMMKDPENKATSPTDQNDKQNDFGESTLVNGYGSENGNENDGWTTVKSKKQGKMSTKNQKNVDQFYSEQVPLSPASTKLNWEVMRSIDPDGYRNIELEVWEENRKEQQQKDHAVAATFQFKKGDRCQVKHPFDEKFYLAIIDDVFDEKCKIWIPELKERKVMPFSRLKPKEQNSNSGYRELSGYYRKQENSQDNNSPRGGDDQKGGRRRKSNRNRKGNVGDANERSQQEMPIQEDPSSRQRGDKNRRRRNNSNTARTREDKKEFTQREYGNGGQQNQGSVEVSAFPALPKRDEQTEKAKDDSDSNPDPATFWRKRREVEQMEKTTADSKENTVMDPVPVEDSLVSEEIENDVKDDILENQVESFENEWPETVPEKMPEELAQDIPQETPQKIPDEIRQELPQELPHEIPQELPQEKPQEIPRDESEEIAEVKPVTTEKRVNWQDLNNDIRNNYENIDVNNDLQTNEQTTEPTYMNNRPPLKETVIEIEDGESIPEDEGQSYNSMDQVLFDRQRNFGILKNPARQEVQVEPSTTRTFSRYVQAESAVLENGTTVEQVIKERKESPVLQMTNNQTIRGNETPPLVNQNDNKQERDVSPTVTPDHVNHHPINAATIQNEILSGNITYSSDPEGKDLPKDMEIVRHLFNYGIYMYQYFNGMNSVFPGSAPISAMYPVMNPNAMYAMQQSYQNRPMMMPQNMYPQMQQPAHDESQQQSPGEETRENNDSPAYKPSISLHQSPSYHTSHAMAAAQQQAMFNMNYGQMFATAGRPLYSSYNMFPPQRSAFPRYLPNKMGFNRQTRGKYNNSRYTRNDNQPNVKLHNLQTGYGPYSKEAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD52</accession>
    <name>A0A7D9HD52_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="3">5.6.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A029557</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020000232">
        <property type="protein sequence ID" value="CAB3979811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD52"/>
    <dbReference type="OrthoDB" id="5986275at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF120">
        <property type="entry name" value="BIFUNCTIONAL 3'-5' EXONUCLEASE_ATP-DEPENDENT HELICASE WRN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="4">
        <location>
            <begin position="96"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3979811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="35526" checksum="92614096284186B0" modified="2020-12-02" version="1">MEDILSGKYCIVYGSAENVTDPKFIQKLKISSSFSENLPAFVVDETHTIQSWGGISEKKRRGKRNYTAFRTAYGKLAMLRSFLKEEKYKKEAIMTGLDWIVEAVKQHSAEMPRTIIFCNTMNDIGCVVNYLMLKLDKAAYAPQQPKVQGNCLVGIYHSNSWERNKKRVLDSLKVTSGKIRVVVASSALSMGVNFPSITYIINFGPARNILEQHQEIGRAGRDELQSHARIIYHGQQLSYCEESVKDFVKTESCLRVAGYKVLDDRIQPLQQLHLCCKNCSALCDCQEEQYLFIPPEFERDTPCYLNCTKCQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HLG3</accession>
    <name>A0A7D9HLG3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079213</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000899">
        <property type="protein sequence ID" value="CAB3985661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HLG3"/>
    <dbReference type="OrthoDB" id="5988480at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17051" checksum="617AAA453774986B" modified="2020-12-02" version="1">MEMSGILNPEDSMHLFALHLVYLPRINHALDEYKEAFDPHAVRTENNWTPCQMWLNGMMHERNLLAHSQLHDNPDDVEYYGYDPQGPSPLEDNGTVVVPEVMLDNNEEIRSFVLENINPLSPSHDMGVDIYVNALQLAESKIGELNGPIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTP0</accession>
    <name>A0A7D9HTP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="20">Kinesin KIF21A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">PACLA_8A050758</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="20">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell projection</location>
            <location evidence="3">Axon</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cell projection</location>
            <location evidence="2">Dendrite</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Cell projection</location>
            <location evidence="4">Growth cone</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="17">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001331">
        <property type="protein sequence ID" value="CAB3988481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="3176171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030425">
        <property type="term" value="C:dendrite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030426">
        <property type="term" value="C:growth cone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005875">
        <property type="term" value="C:microtubule associated complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007052">
        <property type="term" value="P:mitotic spindle organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051231">
        <property type="term" value="P:spindle elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22248">
        <property type="entry name" value="Rcc_KIF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000164">
        <property type="entry name" value="Kinesin family member 21A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.850.10:FF:000280">
        <property type="entry name" value="Kinesin-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056533">
        <property type="entry name" value="KIF21A/B_hel_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056532">
        <property type="entry name" value="KIF21A/B_hel_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027640">
        <property type="entry name" value="Kinesin-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019821">
        <property type="entry name" value="Kinesin_motor_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47969">
        <property type="entry name" value="CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47969:SF28">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KIF21B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23203">
        <property type="entry name" value="KIF21A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23204">
        <property type="entry name" value="KIF21A_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25764">
        <property type="entry name" value="KIF21A_4th"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00225">
        <property type="entry name" value="Kinesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00380">
        <property type="entry name" value="KINESINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00129">
        <property type="entry name" value="KISc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00411">
        <property type="entry name" value="KINESIN_MOTOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="15" id="KW-0966">Cell projection</keyword>
    <keyword evidence="12 18" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="14" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="8" id="KW-0493">Microtubule</keyword>
    <keyword evidence="13" id="KW-0505">Motor protein</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0677">Repeat</keyword>
    <keyword evidence="7 16" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="16">
        <location>
            <begin position="987"/>
            <end position="1026"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="16">
        <location>
            <begin position="1165"/>
            <end position="1204"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="16">
        <location>
            <begin position="1206"/>
            <end position="1247"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="16">
        <location>
            <begin position="1248"/>
            <end position="1278"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="19">
        <location>
            <begin position="347"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="19">
        <location>
            <begin position="411"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="19">
        <location>
            <begin position="523"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="19">
        <location>
            <begin position="850"/>
            <end position="945"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="18">
        <location>
            <begin position="184"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="18">
        <location>
            <begin position="586"/>
            <end position="637"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="19">
        <location>
            <begin position="347"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="19">
        <location>
            <begin position="371"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="19">
        <location>
            <begin position="411"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="19">
        <location>
            <begin position="524"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="19">
        <location>
            <begin position="880"/>
            <end position="889"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="19">
        <location>
            <begin position="909"/>
            <end position="921"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004489"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="CAB3988481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1295" mass="144352" checksum="71FA5DCD06ABDF95" modified="2020-12-02" version="1">MKHVTSAKETLNSLQQGALSRTTASTNMNAQSSRSHAIFTLHITQQRVVKLNDDETMSNGVQGQNFEYEMLTAKFNFVDLAGSERLKRTGATGDRAKEGISINCGLLALGNVISALGDKAKRGSHVPYRDSKLTRLLQDSLGGNSRTLMIACVSPSDRDFMETLNTLKYANRARNIKNKVVVNQDKASKQIATLRSEIQTLMMELNEYKQGKRVAGEGEAHMSDMYHENTMLQTENDKLRMRIKALNHTVDEQKKRITEYVANKSIALLNGELKGGVEELIAGYVEEIEELRSRLLESEAMSAVVARRSVATALRMGRASIEAPTESILELAKQDLNTKMRKAKELKNMVVEDKKPEVLDLGSDGEKESGDESQSEEDDDTQNEMQLKGLTRDLDELKKTKVKLMRQMKEEIAKNKKREAERERQISQLKKESRKREIQIKNMESEKRQRELVLKRKQEEVKQLRQQHKPISGKLGKQRKLNPAPPGPEPPLSSTATMVVSGTGVEVQPVDRSERVNGLARNARGSSIPTTSRVTGKAAPSPRKRLSASQVKKTWETIEKRIERIVAHDQTVSTMESDMDRWIKDRDMLSKKIEKCNNKLAETTDDDNATRDLNEQLDALKAHLDYVQDNITEAQTEIVDLEEGGETTEITEVITKCSTHEARLLMEHFLNKTIELSKETVSKDATVKELETKLEALRQHSELQQDLVMNLLQYPSKDDPAITSKDPKDPEVMVNGGPEMKNGMIADDIVPFMSKSEFMAFMKDDILPNTNKINTQASAKEKARRRSSTQNELLYPVRHEKRESTLSSILDVPEEPALPLINTQVTPSDPINTTDLKQKLLQLERARKAMDKNDSTLMPPPVVKVPVSTPSIPPDRPQSVAGSTSSSFVRGSFKSKSARNFARPKAPLSSVSVTSSTESRSQPTSPTPQRKSFDEKGKLGNGQNDAEDVFSRLTSTLPQDANPNAGRMLPVKPPMGKPGALVCVYASTGHNSAVLSLCVSQSTMFSGSKDRTVKIWDLNTGEETMSLGQHKRDVTSLKYCAETKRLFSVSQNIIKIWDIRSPPAKCIKSITSGGVTSDSSINDLTVNHSGTHVFAANGNTVKIWDLNNYQMIGKLGGHAGHVMALLLLGIEEPYLMLTGSRDHYIKMFELSGTLSGIQTPIQTFEPPHYDGVQSLALQGNNLFSGSRDNSIKKWNLSTQQVQQNLISAHKDWVCSLDFLCSHNVLLSGCRGGVLKLWEPETCQEIGEIKAHRHPINAIATNSSFVFTASSDRLIRVWKATEILDEQLSQMNHNRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUW3</accession>
    <name>A0A7D9HUW3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068734</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002431">
        <property type="protein sequence ID" value="CAB3994278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUW3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21508" checksum="2B1BCE82BB9FE0E8" modified="2020-12-02" version="1" fragment="single">NTYRQKLKKDDLGIASFPSIFCTDETEKQLSGRAARAIKCKYAAGNEPSSPQEPGCSSDCVEPEAEMDLAIEIPNINIERHDIEQPDHEEFTLQWLVRIAITLWNYKRGTEFFAIKSYVIICVCVDDLAYCDAVAELKKSLCPAAQREMLYALFESCDLRTGEDPGVYKWELENILAKADPELSSRFCHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZ96</accession>
    <name>A0A7D9HZ96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase PIF1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063931</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002325">
        <property type="protein sequence ID" value="CAB3993762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZ96"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="26277" checksum="398915ACF1401EB0" modified="2020-12-02" version="1">MDQFTDAIRLYFDKKSVAEYNYGKLLQLGQPVAKIQAKNSGHGASAATSDEAGGLDAALFLSTKAEVMLTCNLWAEVGLCNGSFGTIEQIWFAENMGPPNLPIAVLVHFHSYSGRAFLDACSKCIPVPPKVFEWVADGKYLSRQQVPLRLRYAMTIHKSQGQTLTKAVVDLGKGEKVAGCTFVATSRVRSIHDIVFEPMTFDHLKAIGRSKNMQKRLEAEQRLKVLAEKTVQTYSTSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I140</accession>
    <name>A0A7D9I140_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056775</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002534">
        <property type="protein sequence ID" value="CAB3994766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I140"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23450" checksum="20E3C29F902A827E" modified="2020-12-02" version="1" fragment="single">FENLVLLDLRLLYIENLKICIAAGVKWSEVMMNSTIKRAKCREKNALMSLPFLDVPCNRKERKKRIAHHLPSICFGSTQYRIATLQESKLSQSYNTKKHARKVQHLRFGKPTIGELTLSDKHKKSHNKSQRVKNSESLLLICQKVEHIKNIQKNGKWHVEKPSAPFRFTFPAFPAREEFVFRNRYRNLKKLHSEKEIPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4Q2</accession>
    <name>A0A7D9I4Q2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068745</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003935">
        <property type="protein sequence ID" value="CAB4000822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4Q2"/>
    <dbReference type="OrthoDB" id="6117306at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051077">
        <property type="entry name" value="Ca-dependent_lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24024">
        <property type="entry name" value="PULMONARY SURFACTANT-ASSOCIATED PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24024:SF18">
        <property type="entry name" value="SHORT-CHAIN COLLAGEN C4-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24496" checksum="AB734E4D721F1319" modified="2020-12-02" version="1">MFNTSLNEILYRQGDPRVQGDRGPAGPEGPKGIQGESGKVGVTYIRWGKKICPNTGATLVYKGYVGGTYFDQSGGASNYVCLTRDPIYAKYQSCYQDDRSRIFGAEYQTYSTGIYPSSLYNHDVPCAVCHVTKRASQMMIPGRNVCPAGWTREYKGYLMAERHNHHRTMYTCVDEAPDYTRGTHADRGGALFYFVQGECGSLPCKPYIEGHELTCAVCTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4Y9</accession>
    <name>A0A7D9I4Y9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058796</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003373">
        <property type="protein sequence ID" value="CAB3998508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4Y9"/>
    <dbReference type="OrthoDB" id="5987001at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="20995" checksum="6397CA4560012DE8" modified="2020-12-02" version="1">MVLWRLVSLQFRISEDFPSKEDFDEQLTLPGNHNDILLKSFKQWLSRCAEQDQSFAYTMQMIDLFAPLLEGMNDVIRNGLGTTREAIWKILLPIFAQLQFQNYWMEALVHVVNFTAVWPIAFREMMRRNCSISLSGKEGHDLAMDEFVEEHLVKPLKSYVTAHNLVHIIQLRTYKCEDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7F4</accession>
    <name>A0A7D9I7F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047858</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004643">
        <property type="protein sequence ID" value="CAB4003492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7F4"/>
    <dbReference type="OrthoDB" id="441660at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="37216" checksum="E1883212F59BF256" modified="2020-12-02" version="1">MLIEHTLSYAFIVSTPPNVPDRFITVIFQNKLNREARVVPSKGTHNNRGYVVGRNSLVNVSIIIKGEKTVQPVTFRGEDLETQSTFMLNKSLSPISLTSSDTPDVVTSISITAEAPHVKPIQSWLLLSFDGSSVSGSPSLSVYGEIRVSDGGLHFDGSTSFMDTHIKESHCLHDTEFCSKGFSFATKLKIDEAANRYTEPKFILDTGGHGEKTRGVSLFVENQKLVAEVTTKNMTYRAATALVLEEWIYVMMTFKKDLGVLLYYDAHLRGTDNKGSPVPVIHPVDTNKNFLIGRNIEGLPYQYAAFDMASLTVFEECLHEGDVNRAFLFFWSGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7R3</accession>
    <name>A0A7D9I7R3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Tripartite motif-containing 45-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A038038</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003645">
        <property type="protein sequence ID" value="CAB3999668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7R3"/>
    <dbReference type="OrthoDB" id="5951542at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047153">
        <property type="entry name" value="TRIM45/56/19-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027370">
        <property type="entry name" value="Znf-RING_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000315">
        <property type="entry name" value="Znf_B-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462">
        <property type="entry name" value="BONUS, ISOFORM C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462:SF296">
        <property type="entry name" value="MEIOTIC P26, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00643">
        <property type="entry name" value="zf-B_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13445">
        <property type="entry name" value="zf-RING_UBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00336">
        <property type="entry name" value="BBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57845">
        <property type="entry name" value="B-box zinc-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50119">
        <property type="entry name" value="ZF_BBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3999668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="413" mass="47346" checksum="AC1575E70B41E77D" modified="2020-12-02" version="1">MASASSMLPSNQRQDLKSLLECAICLETFDDPCTLPCLHSFCKKCLEHFVDGKCEDELNCPVCRSKFTINEEEGVAGMTRNHFICNMVEVLSIQDQDTCIPCFHCKQASVARCVTSELFMCEKCLQSHNGYIGFRDHVVLTMEELLKPENQSKIKGKSYCKKHASKKLKLYCETCEELICTYCVVFEHVRPHHVCSPLEEIAERKREELKTICETLNSDVYDNTQHYDELAITSFYLDKDLEEVKSHINKRKNSVLTFLKNILEKKAQSLIEETENTVRVKNQTIDEELKRVTDHIAGQKKTCDMAEALVENGSNEEIMLSHKLVQQSLENSEKEYGRKEIDAKLPQYSDGVLDSKFFDEIKAINLKDTKQRRTFKELRKTRMSIAGNRSINPDNVVAIEMAATGFCNGFGWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9V4</accession>
    <name>A0A7D9I9V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003998">
        <property type="protein sequence ID" value="CAB4001085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9V4"/>
    <dbReference type="OrthoDB" id="10617614at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035992">
        <property type="entry name" value="Ricin_B-like_lectins"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50370">
        <property type="entry name" value="Ricin B-like lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18947" checksum="5780B2BF83F0CC2B" modified="2020-12-02" version="1">MINEDNQRKGECKSDEEIVPESVPDKGFWLQNQNLSKCLKLVENDKIIGTSCTSPTPPDMLWIWTNRTERLLMNVKTLECMERQSFDNGKVSLEPCTVTIRWQRMTCTKEQYGIKIRWKEVRDPFLHLDNNFDVISKENGNQLWKSNERNLCDANITYAGTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBM7</accession>
    <name>A0A7D9IBM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008537</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004296">
        <property type="protein sequence ID" value="CAB4002232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBM7"/>
    <dbReference type="OrthoDB" id="5955087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd22343">
        <property type="entry name" value="PDDEXK_lambda_exonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019080">
        <property type="entry name" value="YqaJ_viral_recombinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47526">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47526:SF3">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09588">
        <property type="entry name" value="YqaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="650" mass="74753" checksum="4E860B358B39DAF2" modified="2020-12-02" version="1">MSSAMPMSSATSSRVLTENDIPGSSFGGKLPALFKKDELRFWLKCRGDSLKGLKTKAQYVKRVEAYIQSGRDKFITDPDKDQIYTKRKQRRLILDEQSNKKQLNGTTVYLSLGWSKDLKRMPFFTRAEMNLFIVNSGKNLTHTPCVQSNFRKATTFLHEEYLKNIFSSTDEKYFYFKAQCHHSFKKNDPPHELKIALCLITGNVKNAQCSCVAGKVGFCNHVLALMMKLCKFSLYNCVTINELDNEIDMQPQYSCTSKLQQWHHKTRGDDIKPEPVMNIMVNKPTTMSDKPETSRGVRCQLYEARNNLKRQTTDEIKFKSALHNINHCIPLATIMQPENNSYIHTKFGESPEGSYASYQLSITEHNFEVCCSTDSVPRSLNTVSLNSPIPGYPSFPISDMQTPTTYTTASSLGKEEKQLLEHLTCDCNKVNDIETQTRDQAESQEWVNQRKFRITASNFGLVKNRKRNHENLVTNLINPKSFTSRHTMHGKKYESVAIQQYEKYMRDSRNPVTVQRSGFVVDLDNPFLGASPDGKVIDYGCSEMYGILEVKCPETKFQVTPLDACSDPAFYLENIDGMPRLKHNHTYYDQVQGQLGVTKDKWCDFVVYTNKGMCIKRFRLNESYWSELKHKLRCFYFEKFLPIAAIEFTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGD8</accession>
    <name>A0A7D9IGD8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006585">
        <property type="protein sequence ID" value="CAB4009825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IGD8"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="149"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="31635" checksum="E6BEF7ECD0D30AD6" modified="2020-12-02" version="1">MNGKFTTIVESRRKITVTTINVTKANGGCLLSGSTAEELGLISLHLNAVQITKSSQTPPTFTSIKDNGVQRVVQKYPNVFCGLGKLRHQTVELLVDKDVKPVTQRQRRIPFHLRSKVDAELSRLRDEDIIERVPDTEATEWISPIVIVPKKDDNILLCIDMRAANTAIKRIRHPIPTVHDISHELNGAKFFTKLDLTQANHQLELAPESRHIRTFITHAGLFRFKRLNYGTNSAAEIFQHALQHVFDDIPGVRNIADDILVFGSSYKAHNKALDGCLHRMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHB5</accession>
    <name>A0A7D9IHB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Very low-density lipo receptor isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A087227</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005847">
        <property type="protein sequence ID" value="CAB4007605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHB5"/>
    <dbReference type="OrthoDB" id="5971039at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005041">
        <property type="term" value="F:low-density lipoprotein particle receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00112">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.400.10">
        <property type="entry name" value="Low-density Lipoprotein Receptor"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036055">
        <property type="entry name" value="LDL_receptor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051221">
        <property type="entry name" value="LDLR-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023415">
        <property type="entry name" value="LDLR_class-A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002172">
        <property type="entry name" value="LDrepeatLR_classA_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22722:SF5">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22722">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00057">
        <property type="entry name" value="Ldl_recept_a"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00261">
        <property type="entry name" value="LDLRECEPTOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00192">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57424">
        <property type="entry name" value="LDL receptor-like module"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01209">
        <property type="entry name" value="LDLRA_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50068">
        <property type="entry name" value="LDLRA_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="45"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="65"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="84"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="114"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="126"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="169"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="176"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="188"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4007605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="27607" checksum="6C977591A59919CA" modified="2020-12-02" version="1" fragment="single">KDYLCDGLADCQDSSDETPNCGIIIRCKQNQFRCDSNCIPLDWLCDDHADCSDGKDEMNCTRGVCLPDQWKCGSGECIPERHKCDEDPDCRDMSDEIGCSNTSVICDVKTQFQCTSGQCIKLELACDDNLDCFDGTDENNCTHSESGCTSDGRAQNNCTTAVQSNSTTCLQTQFHCWNGQCIEADKICDGKIDCQDGTDEFKCLARENQTSCSTNQGGCHQLCHDHDSSFTCSCYEGFDVDRGDSTNCVGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IM58</accession>
    <name>A0A7D9IM58_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Collagen alpha-2(I) chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A053159</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008045">
        <property type="protein sequence ID" value="CAB4013844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IM58"/>
    <dbReference type="OrthoDB" id="5976246at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005581">
        <property type="term" value="C:collagen trimer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005201">
        <property type="term" value="F:extracellular matrix structural constituent"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000885">
        <property type="entry name" value="Fib_collagen_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF46">
        <property type="entry name" value="INTELECTIN-1A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01410">
        <property type="entry name" value="COLFI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="6 8" id="KW-0176">Collagen</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0430">Lectin</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4013844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="28056" checksum="F7A02841C84D86B7" modified="2020-12-02" version="1" fragment="single">KGLGKKNCTDKRDSQIQNLKKKFESLGDMLKSKLEKIEGILSASVTSGYGSKSNPGKSCKYILAANTSAVSGTYWIKPAVSTLFQVYCDMKTNGGGWSLVYSYTFTNYNSFTSGTNAVTPRPNWPVSTANVPISTTPSVNESSLGAVDWNFWKHIGQELMVKSNVNDWIVCQPNGGSLVAKKDGSMSCQNTKNVATACSGVAPSRIRWNAHGPFLSASSLYYYFDGYTGGDWPTHDPCGKNNGNHKKGVSNPGGQIYLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPM7</accession>
    <name>A0A7D9IPM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polypeptide N-acetylgalactosaminyltransferase 10-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A076163</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006966">
        <property type="protein sequence ID" value="CAB4010936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPM7"/>
    <dbReference type="OrthoDB" id="6119243at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004653">
        <property type="term" value="F:polypeptide N-acetylgalactosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006493">
        <property type="term" value="P:protein O-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11675">
        <property type="entry name" value="N-ACETYLGALACTOSAMINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11675:SF68">
        <property type="entry name" value="N-ACETYLGALACTOSAMINYLTRANSFERASE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-0464">Manganese</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="8">
        <location>
            <begin position="2"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4010936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12445" checksum="F28A25114A2AE83B" modified="2020-12-02" version="1">MRSKERLGLIRARMLGASNAHGDVVIVLDSHCEVNQGWLPPLLAPISRDEHVVTCPIIDFIDHDTFQYKPMGSFIRGTFNWRFDYKERELTKEQMKRRKDATEEVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPV0</accession>
    <name>A0A7D9IPV0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chitinase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007014">
        <property type="protein sequence ID" value="CAB4011056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPV0"/>
    <dbReference type="OrthoDB" id="3012298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46476:SF13">
        <property type="entry name" value="2, PUTATIVE, EXPRESSED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46476">
        <property type="entry name" value="CHITINASE 2-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="23010" checksum="09ECD62AE78A29B5" modified="2020-12-02" version="1">MEMSRSSVALLILVNFLQVLEGGDCIIIGTYLGALPNGVRPPALSSIHPQDVSYNGNFQPFSEWTRLGITKRSISITADKGNNPNRKYVISLGGAANFGGTFRIRQGLTVEQWVTNAVASISQILTNLSADGVDIPQFYAKNLGNVNSVVTDITQAANDLGGWSKLVAGFNSNNRNPNPTVSLQAFQRLKRNLQGTFTWAAEISKSKSSTILH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J217</accession>
    <name>A0A7D9J217_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039609</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010497">
        <property type="protein sequence ID" value="CAB4019510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J217"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="19107" checksum="E85359D8173E4EAD" modified="2020-12-02" version="1">MVSERGDVLRECLEALSLDKDLRTKWINLVGPNWDLEASIIVLQRIVTFFVKSKQQIFREKEGLKPNKNSVSLRREIMKPKERKIKKKSVVDSEISKMRAAGETSESFAGFLHHLCTLQLPAQNILLNQLTGKELAKLLKSLGKPSLQGKKKEKQVLSVIETLKNKDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3V2</accession>
    <name>A0A7D9J3V2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016261</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011351">
        <property type="protein sequence ID" value="CAB4021280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3V2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="274" mass="30589" checksum="9BC2DC4C761C454F" modified="2020-12-02" version="1" fragment="single">MNENEGQSGSAEAVQETAHGESDAQMSILKKKRSQLRGKITRSINRARKFIEEGAEKRKRIEKEIIQIRKDFELARECHAEMYEYVGESQTSTMDEWEDILTNDVYDIEEMVETFLLSLSVSEHANPMSSTSEQILEPEVNSNIESAGGNAPVSHEEVEGASIHETEASGSAQSITNSDKTVSNAENLQNIACNSVTDELDCPKSKINPNLSSPQSFDTWIDNLIEFEETVLPTKVSQMSIAEALYKLESSKDIPSIVLIKYDGNPLTYVEFIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6A5</accession>
    <name>A0A7D9J6A5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039993</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012230">
        <property type="protein sequence ID" value="CAB4022928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6A5"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="214" mass="24977" checksum="90D3F3345CB402D3" modified="2020-12-02" version="1">MFSIMINDIRPVQASNLIVKFADDINLGIKVTDDSDASYMETNNIINWAETNRMKLNNKKTWEMVIRGKITRPLPAPLPMIVRKSWLKILGVTFQENPSMWDMNLDELMSKACSRMYIIRIRKYYGFSTKELDLLFHSLILSILVFGIEVWGCASYSKYLSQVEKPLKRAYKYGYLMYQVSIVDILNNKDRDLWEKITTDPNHALQVLLPPSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6D2</accession>
    <name>A0A7D9J6D2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004378</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012197">
        <property type="protein sequence ID" value="CAB4022862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6D2"/>
    <dbReference type="OrthoDB" id="7700017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF8">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="PR-1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="414"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="419"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="438" mass="48730" checksum="94760137ADEF24ED" modified="2020-12-02" version="1">MEARLPSDKLNRLFVDLNSWHTKKSATLQELQSLIGTLNFACKVIAPGRAFLQRIINLTRGVSKPHHHIRLTNGFREDVKMWQLFLKDWNGTSLFLNSFWENSTNLSLYTDASGTLGFGGIFRNQWFQANQISAASTACRPSTSTSTRGTFSSLDADLRRYQLASLAKVDLLRNYEHFWPKVVITLLTMQATALESERLPQLRPKLVWETSTLLGVGYARTSERFKVYVVARYKQHGNVIGHYDRYVKRPAYILDTFQDNCYGIDGGLSDWMGPGPCMRSCGGGVTFLTKSCTNPKPSMNGKDCEGETKELVQEWCNTHVCSGDLSHRDLQCAARGERADAHNFQGTRDCQLHCRISDTHFLLVGHVDDGTHCDYDSGACVSGTCYDMPDYVVGTQPPMTSPVTTSVVIGNRTTQPGVATTKAATTKPATTKPTSTQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J920</accession>
    <name>A0A7D9J920_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Zinc transporter ZIP10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A053286</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ZIP transporter (TC 2.A.5) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013081">
        <property type="protein sequence ID" value="CAB4024526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J920"/>
    <dbReference type="OrthoDB" id="200954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140410">
        <property type="term" value="F:monoatomic cation:bicarbonate symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005385">
        <property type="term" value="F:zinc ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030003">
        <property type="term" value="P:intracellular monoatomic cation homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071578">
        <property type="term" value="P:zinc ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003689">
        <property type="entry name" value="ZIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050799">
        <property type="entry name" value="ZIP_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12191">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12191:SF37">
        <property type="entry name" value="ZINC TRANSPORTER FOI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02535">
        <property type="entry name" value="Zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="294"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="321"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="357"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="107"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="122"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="157"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="167"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="194"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4024526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="381" mass="41741" checksum="0557DD3D82F1ACC1" modified="2020-12-02" version="1">MVFVGIYVFFIVECCMKLKLARRKKTDTRILYGAGKQQLQQIAGGTETARLSTAVEAATEDPENAEPSRQSLNTFIMEVTSGNRRSSRQVRDSLWMAYMAAVDDNGEIPSINEDGLPTPGAPKEHYRSNRESYAGRKIETLRENSREDLLPDIPESNNREKTRDSSEGSTSSKAEGENQQNESNHNNNHNHNHAGHDHDHGHGDGNGGDHGHGHSHSHHKEINSNTKIASLAWMVIVGDGFHNLADGLAVGAAFSASFTSGLSTAVAVFCHELPHELGDFAVLVKAGMTVKQAITYNMVSAVISFLGMIVGILIGSNESSIVWVLALTAGMFLYISLVDMLPELCTQLAEEDFKTGLWTFFYQNLGIMTGVLIMYLISLME</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JAD2</accession>
    <name>A0A7D9JAD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061279</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013385">
        <property type="protein sequence ID" value="CAB4025059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JAD2"/>
    <dbReference type="OrthoDB" id="5980831at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="28195" checksum="5A97D6CF4F611D70" modified="2020-12-02" version="1">MKCRAYFKDKPLSEINVEGLSKFREKSTWYPSKVDPALETFLNALQDKVFAIKERGHNFSNLSAEEREAFKNLKGYRDIVIKGADKGSAVVVWGLEDYCKEANRQLADVLVYENVSEEGNPLAKVSEIVRNKLENLKGKAVISEKNFNYLRGRPVISNCGTPTEGLSELEYHYLQPIVKSLPNVIRDTTDFLKRLQDLGDIPEGAILCTMDVVGLYPHIPHLEGLSSMRKSIEDFRIKCGMDKGGGTFCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JK53</accession>
    <name>A0A7D9JK53_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017783">
        <property type="protein sequence ID" value="CAB4031621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JK53"/>
    <dbReference type="OrthoDB" id="10066929at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="517" mass="57531" checksum="66E3735B8EFE4079" modified="2020-12-02" version="1">MQKPSEISEAIEPLPREGQESGETDEILNQLKSVAQQGLEWISKAKGAKQQELPPELVERETEELISAKKDEGNLEKAKQLMNEAQESVQASSNKKDMKDRFVAVLHALDLPPDSFENIAPSELLKELNEIIEQKSKVIDSEFVSNEKSDVDLVTEASGGRALCGIYHSEYESPRPAGQPILLVPTDVNMFGAGERSQKSFLRFTSKGAATNFFSTIKSTSSNVGAAINGFGGYFLAEGSFGSEFKRTSQRTVKSSCTSVSVLQHYSITMKQFQIEEDKMNLTKPALQLATDIGRGRESQNKARSFMTLYGSHIPSGVHKLGGIFCSIADAESDTSIETSKFTMAAEARLQSTISAGGHFGGAFLIGGSVTGEHHSSSGEIEASQAEKNNATYRFSVEVVGPLASNPVTFAQLLEYKSTWAIIGRGPPEGYIPVWRLLRKQGKEFQSAADVLEKIWKEDEEKKRRLWEDKMETVKKDLEEEIKLKRVEEELQRTKVEFLKRLYHTNSRNIFRFICKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JK78</accession>
    <name>A0A7D9JK78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A065896</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017295">
        <property type="protein sequence ID" value="CAB4031014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JK78"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="186"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4031014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29260" checksum="AB6BD17F355B1DF1" modified="2020-12-02" version="1">MAQNEGSNLGSNEEIRANKGVGKRSLCFTPSPNSKRPPDKRAKNLNYDEDIRQSLASNFAYEEGCVTGVDDILDIVQSDLGRPIRRVDLYKAISALFGEKTEKKYRKTAGSQLMAKIIGRKSIISLTYSNIRNIQESELMQQQQQEQESFTNIEDVLNLHAVTDSVLRNDLQRCIDNAIRHISSENTVLKHELHETKEQVKQMQETLVDISNITSMGTDYQLTKFQKKKIKEEMKTVDSMHNLGLKTLKKQMILAQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPI5</accession>
    <name>A0A7D9JPI5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type I inositol 3,4-bisphosphate 4-phosphatase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A076860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019020">
        <property type="protein sequence ID" value="CAB4033182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPI5"/>
    <dbReference type="OrthoDB" id="159395at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016316">
        <property type="term" value="F:phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039034">
        <property type="entry name" value="INPP4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12187">
        <property type="entry name" value="AGAP000124-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12187:SF11">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL-3,4-BISPHOSPHATE 4-PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4033182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="35272" checksum="22539C66A96E3F61" modified="2020-12-02" version="1">MQDLRQRRDICLSQAVTALICGFEAKVYTSLLNESFMKQLCQIGVLAEFECLLSTYGDEMGMLEDMSIAIRDLSAVKFKFACSDSDSIPYVTGTRTNIQVTILLETEYFCYLPKELQEGKLIQVSSVLFTQGINEHATLAERFGDTSLQEAINDEHFSYINLYYEKFREHFPEEANAVNPREPALYVLMEHLKTSIATKKSKNVEILFLAQEICWGMNGIRFTSCKSAKDRTSMSVTLEQCSILKRKHNLQPEIFNQAIDVMRSGGTRRDNCFKNAGIRRYAFNYWQVMALPRLYRPPDGTYGKNIQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRH6</accession>
    <name>A0A7D9JRH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Scavenger receptor cysteine-rich type 1 M130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082578</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019988">
        <property type="protein sequence ID" value="CAB4034287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRH6"/>
    <dbReference type="OrthoDB" id="77601at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="26051" checksum="71717CF40C7DF520" modified="2020-12-02" version="1" fragment="single">PDLNDRMQNLENENQSLSTALTLLQHELDNTQQHKWKVVKAKYNKPPPETPAGSNTIETKNQYTTLRVTDSEHDDILARLNTQQILDETSNTTKHSNIQMVGKSSGPSNSNESSRDSQRSQPRIAILGDSMIKHLDTKRMQNGLKKGKVTIKTFPGAGIDQMKHYAVPTLITKPKTLIFHVGTNDLHNKTPEDLINAMNDLGETIHRQNNDLELIWSEIITRTDDPNLAEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JXY5</accession>
    <name>A0A7D9JXY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016483</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023228">
        <property type="protein sequence ID" value="CAB4037566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JXY5"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12456" checksum="B82E425521CDAA65" modified="2020-12-02" version="1" fragment="single">MEDYLKPVVRKEPENIILHVGTNDLNKSASPDQIAHGIINLGIQINQDSPQTSITISEILPRTDKSNLLIKASQVNDIVKKYCDQNKWGYINHKAINATCLNSKGLYLNKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0T8</accession>
    <name>A0A7D9K0T8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Replication factor C subunit 2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A060635</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the activator 1 small subunits family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025777">
        <property type="protein sequence ID" value="CAB4039716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0T8"/>
    <dbReference type="OrthoDB" id="4199794at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005663">
        <property type="term" value="C:DNA replication factor C complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003689">
        <property type="term" value="F:DNA clamp loader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18140">
        <property type="entry name" value="HLD_clamp_RFC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050238">
        <property type="entry name" value="DNA_Rep/Repair_Clamp_Loader"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047854">
        <property type="entry name" value="RFC_lid"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669">
        <property type="entry name" value="REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669:SF5">
        <property type="entry name" value="REPLICATION FACTOR C SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="6">
        <location>
            <begin position="81"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00040745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4039716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="26185" checksum="5B2D476987CA1332" modified="2020-12-02" version="1" fragment="single">MMVMVLITGDDDGGKNDGDDDCNGDDCNGDDCNGDDCNGDDCNGDDCNGGNEVDGYKDDGDGISGDDDDDVSVEVFAEQGNVPNIIIAGPPGSGKTTSILCLAMALLGGSIKEAVLELNASNDRGIDVVRNRIKMFAQKKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEVFSKTTRFALACNISDKIIEAIQSRCAILRYTKLSDAQILSRLMEICDKEKVLKTDDGLEAITFTAQGDMRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8V4</accession>
    <name>A0A7D9K8V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A068124</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028180">
        <property type="protein sequence ID" value="CAB4041358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8V4"/>
    <dbReference type="OrthoDB" id="5983996at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="138"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20707" checksum="A89EBB405F2DA251" modified="2020-12-02" version="1">MRNIEKLVRIAHSQGKNWKTELYRFLLEYRTTPHVTTGIAPADLLFNRQIRNILPDSNAMIPEGNGGNLDKTSPTTGREAVLQRDAREKNKFKDRADIRNRAKEPHFRIKGSEITAKRRGVTVTRDSSHFKRVIPYLQELDDPYSNSSEEEEDGEMAVQQQQEDPENDIASELSGEDIDNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KD63</accession>
    <name>A0A7D9KD63_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045827</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033131">
        <property type="protein sequence ID" value="CAB4043768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KD63"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="20925" checksum="42291972BECA26A4" modified="2020-12-02" version="1" fragment="single">KQQKEENKPKTQRKGSSIGLRRVANRCIGTRVEPLALANFQQTLGKTDLAEFIANCGYKAVDNALKVGWEIKEAPSDLERATKTCMEILEGCLGKECVAGCDKQWLYIAHNVLSRNDIPETEFREAVVSLLTKGRGEYRNILIKGSSYLWKNFLTKSAEFYLSHVHQPCYYQLCLGGYFSELLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KVA8</accession>
    <name>A0A7D9KVA8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Retrotransposon-like family member retr-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A062138</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011183">
        <property type="protein sequence ID" value="CAB4020915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KVA8"/>
    <dbReference type="OrthoDB" id="5988588at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4020915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="489" mass="56084" checksum="D49B11DA58FEB0F4" modified="2020-12-02" version="1">MNQCNEPVLAMYNPKQPIRISTDASRSGLGAVLEQQTDGHWLSVAYHSRAVTDAESCYAVIELETLAIATACERFHQYIYGQRVEINTDHKPLVAIFSKPLNDCPPRIERLRLRLQRYDLHLTYVPEADVQVHVEGIMVTTLVSDRKKTEIKHEMEQDTSMQKLIKVIQAGWPDERQACSYELQAYWNYSDELCIHEGLIYKGKRITIPLKLRKEILSQIHAGHMGHEKCKRMARQVVFWPGMNHEIDTLVNQCEACQKHQHQQSVEPLKPHLVPNRPWQKVATDLFELNNQHYIVIVDAYSNYPEVQELTSQSSKSVINAIKTVFARLGILEEVLGDNGPCYSSAEFASFAKQWDFNHITSSPGFPQSNGLAERTVQTVKNIISKSIESKEDYQMGLLVQRSCQSKTGCEPHWKDKGEVLKRVMPRSYNVKTENGTVLRRNRRDLLKIQEKAKDSTEKEKAQAMDLASRKKHQVNTKILDKKPEIKAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L5W5</accession>
    <name>A0A7D9L5W5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013884">
        <property type="protein sequence ID" value="CAB4025900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L5W5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="12702" checksum="071326C1BE99094F" modified="2020-12-02" version="1">MRKKACQKLGETKKRQEQEETSGPCRKRKSTEFLEYLKYIQDTNKENTEIQLKIREQEIILEKQRLDVQQNMQNQMVEQMKMQEESQKAMFNLFQTFMNKFKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LEM1</accession>
    <name>A0A7D9LEM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043189</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017636">
        <property type="protein sequence ID" value="CAB4031442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LEM1"/>
    <dbReference type="OrthoDB" id="6016440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="227"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="28134" checksum="A5D257392F43C68B" modified="2020-12-02" version="1">MAFSSNEAYSKYLYKDPKNERTKYFNAILPDIYKHAHPFLLGKNLVCKLEKEEEEIKSNLATHFDKNKLKAWAIEQHQYSTAILEEVDQLRANVQEKLEKLLSVKKSFDRVFKGIPLVNKKSVKSRKQKENRNKQEKRKRKRLNRIQEEIKCKIVKLDSSSESNQSGINISKSMLQLDELDKLRAHRHKAGLVALVKNGNWDPDARKCVLAKSTEWELEEGCSKDAEEQDDEQDGGESNEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LEN8</accession>
    <name>A0A7D9LEN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A027677</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015859">
        <property type="protein sequence ID" value="CAB4028982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LEN8"/>
    <dbReference type="OrthoDB" id="5953554at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4028982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13058" checksum="44B45985BDE57B09" modified="2020-12-02" version="1">MDDGEFVTVEEFVKGSFDKYINNDGTLCGTSTYIRMKAESLSHYSYVRSLEKLMVVDIQGSSHKLFDPEIASYELQEDDEYLFSTGNMTFSAITTFVREHNCNIYCELVGLTEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHD6</accession>
    <name>A0A7D9LHD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057489</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018764">
        <property type="protein sequence ID" value="CAB4032867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHD6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.90.10">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029034">
        <property type="entry name" value="Cystine-knot_cytokine"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="209"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="210"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29223" checksum="72BFC5CD5FA6AF25" modified="2020-12-02" version="1" fragment="single">MPDSFVLEPQREVISIYKDDFTTPPSRPQYFIEVYRCVKVEVGECSSSGPSAYPVPKTTNEIEIVVPDITNKDRDSSNKKKFYKYVVYNHTSCQCGKLTYRNGPPNGRLYKTITNNEVSAAYFKAKYSKNTVNLIRVCNVCNNAQPRYKLHPKHFNVDLQYKYLAYQQCLPGCVVVKNETSNKQTSMLSGSSVNVPLTNDISCKAYDGAKTQQQGKNNPQKLKSSSSETPVGNSSDQDANYEILVYIASGKVTLAAFLLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHM1</accession>
    <name>A0A7D9LHM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063797</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018904">
        <property type="protein sequence ID" value="CAB4033035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHM1"/>
    <dbReference type="OrthoDB" id="2429546at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="26275" checksum="07165D9B2D57EBD0" modified="2020-12-02" version="1">MENDKKLVLKHLHEKLPGVIASDASASVIKIWKDFGNLYTMIETRGASDEFITDYFEQAKKWIPLFNTIQGAGGICDGYAKANVTPSMHCMVYHVPSFMRMHGGMKKFTGQGIEKNNDNCRRIHLGKSNKCDAAGNVLRVMKRMTTLSAPREYNKRKSVYWDSELNEKRKKQKCQLQQSCKDASSSQVYVANTMSADELREGLKRFGIQTRVRKFTHLHEMYRQALKNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQ61</accession>
    <name>A0A7D9LQ61_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045304</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022645">
        <property type="protein sequence ID" value="CAB4037018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQ61"/>
    <dbReference type="OrthoDB" id="5983488at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23167" checksum="C64E213FB1EA4DFF" modified="2020-12-02" version="1" fragment="single">KSLRITTARNASTRENRREYIDLLSSLHTQELLLSLKRFIARRGRPGKINSDNGKTFLVAAKWLRTVQRDEKLQDFLVRSEIHWQFNLSRAPWWGGQFERLIGLVKRSLHKTIGGGCLKWKELEEVLLDVEVVLNNRPLQYVEDDVQRPILTPNSLLFVGSNAIPELQAHYLEDLSPHKRVRLRRGMAQMADREHPRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LX06</accession>
    <name>A0A7D9LX06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011664</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026444">
        <property type="protein sequence ID" value="CAB4040199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LX06"/>
    <dbReference type="OrthoDB" id="5985206at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="17233" checksum="0EBD2AEC64B87D03" modified="2020-12-02" version="1" fragment="single">MDKTDESPKENNPCPSKDLTDDEKKARILAVLDKFLDEYIFQTTAQSDNEDMLADAHQHKWAALANWKGGRNKNIEIVLLQENRNRDISGLIHLMGSNKTEQAIERASRAAGDVRKIVDVFEDQASIKTKLSTHSHKSSTEDENKTLTDLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M3V2</accession>
    <name>A0A7D9M3V2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031545">
        <property type="protein sequence ID" value="CAB4043116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M3V2"/>
    <dbReference type="OrthoDB" id="3261222at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="10885" checksum="93ECB4F70299167A" modified="2020-12-02" version="1" fragment="single">MAVKNNSQIHWEKFKEIRNKVNSELTKAKTAFFCNKFENCAQSKDMKHSWKLINILLSKNKKSNNISQLKCDDVVISDNTLKAEAFNDFFVNIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M8N5</accession>
    <name>A0A7D9M8N5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like RNase H C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077434</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035053">
        <property type="protein sequence ID" value="CAB4044463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M8N5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048367">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21789">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H C-terminal" evidence="1">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11948" checksum="E0360A448A4FD919" modified="2020-12-02" version="1" fragment="single">MKTKDFVKQYGDQLYLNLQRLNQDFLELFFLCQRQMCGGTQNMTAYEYSYNVSSLTCLRSSRLLMKKQTNVYEVEESLPYLNGNEQLPERQSNDYIDDCSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M8S6</accession>
    <name>A0A7D9M8S6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035123">
        <property type="protein sequence ID" value="CAB4044489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M8S6"/>
    <dbReference type="OrthoDB" id="5980952at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50090">
        <property type="entry name" value="MYB_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="38482" checksum="6E5E10E73A933D48" modified="2020-12-02" version="1" fragment="single">MSTENVKDSFGACANRKRPLVSIDNLEDNIKIIKASRRLDYHSSQLQENKSPLAPSQSHQTGNEGPKSQHIPWTTREDKALVQFVSLHKDEQPTDIVWPAMKASHQYWHKAAKYVQETASSEKRTERSVRQRVVNILRPKFKTIEEAEKGYGLTIDTILDGDFLNENSETPTSMLNTPTFLVSRLSKLTPEQLEDVVKEGLGLLHPNMLVNVLSEVLLKIQLSNMKDVERVTLPMFSALGKEFWISCFLIYLIQLVLSCIVGENGTPLIPLNRMPFGLIEYQLEFFTATNVMQVKEPEDFRLWRETMETEFPSRFKRLFAGPLWSGGGKDVTKDPKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ME33</accession>
    <name>A0A7D9ME33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042861">
        <property type="protein sequence ID" value="CAB4045879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ME33"/>
    <dbReference type="OrthoDB" id="6275059at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="9792" checksum="5E717370ADC29A5D" modified="2020-12-02" version="1" fragment="single">QFKSYCDLEDEGGGWIIFLRNDGQDPQLFDQDWETYQNGFGDLNSNFWWGNEFLHLVTKTTSHELKVDLIKSSATGYVKYTGFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FG03</accession>
    <name>A0A6S7FG03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025713</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000108">
        <property type="protein sequence ID" value="CAB3978375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FG03"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12462" checksum="D954757F69E4A5C3" modified="2020-12-02" version="1">MRAAFFFQSLDNRSSCVLEVVQLFTAASTKLQQVQHSCSRDIQNSSYIGFWCDWSSGNGAVMMIGGGGSGCDRADHGIGVTEENEAKFGSGQGYDFGSDANKNVATTYSLNLWIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL12</accession>
    <name>A0A6S7FL12_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Small nuclear ribonucleoprotein E</fullName>
            <shortName evidence="12">snRNP-E</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Sm protein E</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A041285</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 12">Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytosol</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 12">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the snRNP Sm proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000097">
        <property type="protein sequence ID" value="CAB3978217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL12"/>
    <dbReference type="OrthoDB" id="25620at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005685">
        <property type="term" value="C:U1 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005686">
        <property type="term" value="C:U2 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005687">
        <property type="term" value="C:U4 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046540">
        <property type="term" value="C:U4/U6 x U5 tri-snRNP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005682">
        <property type="term" value="C:U5 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000387">
        <property type="term" value="P:spliceosomal snRNP assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01718">
        <property type="entry name" value="Sm_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.100:FF:000013">
        <property type="entry name" value="Small nuclear ribonucleoprotein E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047575">
        <property type="entry name" value="Sm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001163">
        <property type="entry name" value="Sm_dom_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027078">
        <property type="entry name" value="snRNP-E"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11193">
        <property type="entry name" value="SMALL NUCLEAR RIBONUCLEOPROTEIN E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01423">
        <property type="entry name" value="LSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00651">
        <property type="entry name" value="Sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="Sm-like ribonucleoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52002">
        <property type="entry name" value="SM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 12" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="8 12" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="9 12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 12" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="7 12" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 12" id="KW-0747">Spliceosome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00058057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU365053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3978217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="95" mass="11195" checksum="3562487DDACC8C29" modified="2020-12-02" version="1">MAYKTQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQTNMRIEGHIIGFDEYMNLVLDEAEEVHLKRKTRKTLGRILLKGDNITLIMSVATEAATQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL35</accession>
    <name>A0A6S7FL35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021763</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000081">
        <property type="protein sequence ID" value="CAB3977952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL35"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="37107" checksum="18808BC78D01CBF6" modified="2020-12-02" version="1">MNYSCFLCGSELIDSKDRYLVTGRSSFDIVEAIQNLPFDIRYNSESYVCRKCLSLLKKKRNLEHSYDKCLKELQHLVNKPSGNPEPLYTSTPVKKAPTTQQLPVETNTSDPPTSQTTATICVSWPSQTRRHNLVKELEPLGKALVRGTFTQIANTAYKCKHLRKELANQSTPNPGKTFVIDNLDLRQKVSNMTEENQNVDYHWVNANLINNRVSANHLDDNGPIKDVMEVQVSDILPSPEDHLAYAKNIKTHIQRILVKRVPCLQFMQECVVHHIPHPHQKEMSKKANKVGFLQCTIYLFYQLSVTYVLHVFDARQIFSSTDNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FMV9</accession>
    <name>A0A6S7FMV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080187</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000039">
        <property type="protein sequence ID" value="CAB3977269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FMV9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15526" checksum="5CD334173D8C957B" modified="2020-12-02" version="1">MLQTGCGKGCACNVCVEKREQFKDVFAPLDEFCKAVGSFMEDINSKMYQTLEGLQALERSVNDCQKSVDALRPADPADKNSDYIFEVPEEEYLRATEYPNETIAFCELRNVPKKDLKILDQLSTTQLEPTSIVETVGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNB0</accession>
    <name>A0A6S7FNB0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A027995</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000166">
        <property type="protein sequence ID" value="CAB3979087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNB0"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="106"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="17794" checksum="DC59B0FEA664DA95" modified="2020-12-02" version="1">MGDKLSNDIPQPNVTPESYLSDVQNSVGQLTCFREITEPEILGLLQGLVNSKASGIDGISAKILKIAAPAITPSIVSIFNQSLATGIFPSDWRVARVAPIHKTGAKHDMGNYRPISVNSIIAKIMEKLIHNQIYDYLIASNLLTNSQHGFRPCHSTTTAITNII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQN5</accession>
    <name>A0A6S7FQN5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079647</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000245">
        <property type="protein sequence ID" value="CAB3979967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQN5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14760" checksum="C27BF8185D2ACCFE" modified="2020-12-02" version="1">MFPEGGQNRKHCFLAMFPEGGQTRKHCFLAMFPEDYSVLGSCGLDYEGLEENKYKNTAIRSDQVACLHPVDGKCPHGMLRVDSEEEGRKACDVRRFQSHVGYELTDKKDPRDPRFCPISINCGGPQGTEMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVR7</accession>
    <name>A0A6S7FVR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047944</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000240">
        <property type="protein sequence ID" value="CAB3979896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVR7"/>
    <dbReference type="OrthoDB" id="6345137at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="entry name" value="Chloramphenicol acetyltransferase-like domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.30">
        <property type="entry name" value="Nonribosomal peptide synthetase, condensation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052058">
        <property type="entry name" value="Alcohol_O-acetyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010828">
        <property type="entry name" value="Atf2/Sli1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28037">
        <property type="entry name" value="ALCOHOL O-ACETYLTRANSFERASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28037:SF1">
        <property type="entry name" value="ALCOHOL O-ACETYLTRANSFERASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07247">
        <property type="entry name" value="AATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52777">
        <property type="entry name" value="CoA-dependent acyltransferases"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="666" mass="76334" checksum="BB95022708E19074" modified="2020-12-02" version="1">MALLSDVSMISVSWVKILLTAACIFLVYKIVKYFTGEVREIPPNITNRRQLGFSEEALDILSMEKSGSGNICLGISITSKQSLVHEYVRDALVLLAKRQPMLRAVIGILADGDKYFEIKEINEVIAMFDITISHVKASNWEDVWFEYTAKQRENGLLWRVVILQEEFMPDTRDYVNTLMFNFNHACTDGVSSVKFCKQFLNNMNELANGTGCVDQEISSLDLLPPFHQIVIRGRIWHLLYNFMLAYCGLRPILKFCMERLLGHFIEKKPNNPYHEQFPPTPHVPNSPIPSRLNVKVFTESETKNIIQACKANNCTVTGAITAAAHLAFCELIQNDKSKNMKFESLFAMNGRRFCDPKPHDDYLGYFVYDMQEFYMKYVAGGGVEFWKLAQETTQRIKEFVRKEAYVVEATVREIPPNTTNRRQLGFSEEALDILSMEKFGSGNICLGISITSKQSLVHEHVRDALVLLAKRQPMLRAVIGTLADGDKYFEIKEISEVIAMFDITISHVKASNWEDVWFEYTAKQRANGLLWRVVILQEQFMPDTRDYVNTLMFNFNHACTDGVSSVKFCQQFLNNMNELANGTGCVDQEISSLDLLPPFHQIVIRGRIWHLLYNFMLAYCGLRPILKFCMERLLGHFIEKKPNNPYNEQFPPNPHVPNSPTKPSHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWB2</accession>
    <name>A0A6S7FWB2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Neuronal acetylcholine receptor subunit alpha-10-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A044288</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ligand-gated ion channel (TC 1.A.9) family. Acetylcholine receptor (TC 1.A.9.1) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000304">
        <property type="protein sequence ID" value="CAB3980589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWB2"/>
    <dbReference type="OrthoDB" id="5975154at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005230">
        <property type="term" value="F:extracellular ligand-gated monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18997">
        <property type="entry name" value="LGIC_ECD_nAChR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd19051">
        <property type="entry name" value="LGIC_TM_cation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.70.170.10:FF:000016">
        <property type="entry name" value="Nicotinic acetylcholine receptor subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.170.10">
        <property type="entry name" value="Neurotransmitter-gated ion-channel ligand-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.390">
        <property type="entry name" value="Neurotransmitter-gated ion-channel transmembrane domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006202">
        <property type="entry name" value="Neur_chan_lig-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036734">
        <property type="entry name" value="Neur_chan_lig-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006201">
        <property type="entry name" value="Neur_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036719">
        <property type="entry name" value="Neuro-gated_channel_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038050">
        <property type="entry name" value="Neuro_actylchol_rec"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006029">
        <property type="entry name" value="Neurotrans-gated_channel_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018000">
        <property type="entry name" value="Neurotransmitter_ion_chnl_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00860">
        <property type="entry name" value="LIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18945">
        <property type="entry name" value="NEUROTRANSMITTER GATED ION CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02931">
        <property type="entry name" value="Neur_chan_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02932">
        <property type="entry name" value="Neur_chan_memb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00252">
        <property type="entry name" value="NRIONCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90112">
        <property type="entry name" value="Neurotransmitter-gated ion-channel transmembrane pore"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63712">
        <property type="entry name" value="Nicotinic receptor ligand binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00236">
        <property type="entry name" value="NEUROTR_ION_CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0407">Ion channel</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="421"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="452"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="482"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="609"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="domain" description="Neurotransmitter-gated ion-channel ligand-binding" evidence="8">
        <location>
            <begin position="211"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="domain" description="Neurotransmitter-gated ion-channel transmembrane" evidence="9">
        <location>
            <begin position="427"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="71"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="99"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="165"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3980589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="628" mass="71793" checksum="A2B131AE49CE7F70" modified="2020-12-02" version="1">MSRTCNERPVGENGRNNKNRENGRDGKNRKNARDGKNNARNSNDSKNARNNKNARNSKNRNNARNDKNSRNSKNSKNSKNSKNARNDKNARNSKNRKNARNDKNARNDKNARNDKNRKNARNDKNARNSKDRKNARNDKNARNSKNRKNARNDKNARNSKNSKNARNDKNARNDKNARNDKNAWNDKNARNDKNARDCNNVCVDAGRGHKARLIRDLLQDYDPDARPVKNASDPLTVRLSMTYNQLQDLDEPTQVARSLVWINTYWQDVYLKWNASDYGGITKIHLSPTRIWKPDLTLYNNANKDGAAIYDLSYQVRVSSDGSAALDCPLILESVCPVNIEYFPFDTQKCILKIGSWVYDGLDLDLQLLESTNGINLANLEANSVWELKSAHVERHSVKYECCPAPYIDLTYTLEFRRKPLYYIMTIVFPSVLLSLLSCISFLFPADSGERLSLVISVLLGLVVFMLIVNERTPVTSDATPMLTQFFNSIGASTVLALMATAFILRLNHASTSEPVPNFLACIRDCIAGPLCMRRESPRQRVDVTSNGYHRHWPLNIRDLVGLTSLRKQLAEEKILTEMQKITAHLEEENAASKIKADWHYTMTVFDRFFFVIFFFIFIGFVAYVFSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2K3</accession>
    <name>A0A6S7G2K3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000640">
        <property type="protein sequence ID" value="CAB3983657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2K3"/>
    <dbReference type="OrthoDB" id="5920040at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16702" checksum="7E358F795C0C0FF5" modified="2020-12-02" version="1">MLDQFTKQWRKEDLLSLRESAKLSAKPSKETIKIKIADIVILRNDSTKRVFWKFGKVEELIPSKDGIIRAARVKVQGDGGKQVILRRPIQHLIPLEVKAQLPEPECNQPPVNSVEEEETESARPRRKAAIAADRFRAELYQRYTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4R7</accession>
    <name>A0A6S7G4R7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000672">
        <property type="protein sequence ID" value="CAB3983899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4R7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14594" checksum="54BE5DD2DE5019AD" modified="2020-12-02" version="1">MKSIKENSTLLRFICDHDKAHNVGESDYLQLSLNDFRADVIELSYYSTGVWIKRAKIGGIKLNSNCASYVYQDSATTLHGRMKLFECDFKPSTTSECSNHSGIVSLFGNYKGTHCLEKTHVCLIKSESTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7X5</accession>
    <name>A0A6S7G7X5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A018422</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020001240">
        <property type="protein sequence ID" value="CAB3987835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7X5"/>
    <dbReference type="OrthoDB" id="10070999at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007010">
        <property type="term" value="P:cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd09487">
        <property type="entry name" value="SAM_superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000012">
        <property type="entry name" value="microtubule-associated serine/threonine-protein kinase 2 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1480.20:FF:000001">
        <property type="entry name" value="microtubule-associated serine/threonine-protein kinase 4 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000024">
        <property type="entry name" value="Probable serine/threonine-protein kinase cot-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1480.20">
        <property type="entry name" value="MAST3 pre-PK domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015022">
        <property type="entry name" value="MAST_pre-PK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023142">
        <property type="entry name" value="MAST_pre-PK_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050236">
        <property type="entry name" value="Ser_Thr_kinase_AGC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24356:SF414">
        <property type="entry name" value="NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24356">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08926">
        <property type="entry name" value="DUF1908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140482">
        <property type="entry name" value="MAST3 pre-PK domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="11">
        <location>
            <begin position="464"/>
            <end position="712"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="436"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="10">
        <location>
            <begin position="74"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="436"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="712"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3987835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="712" mass="80867" checksum="DBF5899760472980" modified="2020-12-02" version="1" fragment="single">MAKQPSKDSASREELSLFLKQLSLEYLDNVFPNSMNLQQFRALTEDELEQSFHVQNEKDREELMRAVNRSREDYSDDEDESDSESNLLSLTLPNDFKVSGKSDNHERKLQKMESFAFFSSQEETSNLLKMRSHPSLGSSEPNLHALSGISNRKCSVASNRRHRKNFAGIRTPPQARSPRGWESPSGSPLHGSSLCSVPLQFNFPISRCRDSRRWSVTSSGYGTTPYSSYSSLTSSQERLNQLPNIPSFDDLNFSDVDDERFVGVFPRRGRSRSLSPPRHAVESSEIVTTTSLYKERFPKAVKQLEEQLQAFIEKHVEDDNEVKKNGDGVSNFFLVQVVEAARDCLSKSKDGLLSSGYFMDLSENLQRLLFEARSKTDNDIPVIKVFRQLFIIVSRVARLLSCLEFDAEEFYNDLQATEVRSDELEAYVKSRLNVNHSEQTSPKQASPESQDSPRSEAPPSEDDFEYKKLISNGAFGAVYLVRHRKTGMRFALKKMNKQSMILRNKVSQVFAERDILEFADNPFVVGMWCSFETKKHLCLVMEYVEGGDCASLLKNIGCLPADLARQYFSETVLALEYIHSYGIIHRDLKPDNLLITSLGHIKLTDFGLSKIGLMEMTTHLYEGSMEAKDGKQFTDRQVFGTPNYIAPEVILRQAYGKPVDWWAMGIILYEFLVGDTPFYGDTPDELFNHTLSGAYKRKIALSKHFSVISTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA23</accession>
    <name>A0A6S7GA23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A045623</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Microtubule organizing center</location>
            <location evidence="1">Centrosome</location>
            <location evidence="1">Centriole</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the CEP135/TSGA10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001229">
        <property type="protein sequence ID" value="CAB3987763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA23"/>
    <dbReference type="OrthoDB" id="10254663at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005814">
        <property type="term" value="C:centriole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051877">
        <property type="entry name" value="Centriole_BasalBody_StrucProt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20544">
        <property type="entry name" value="CENTROSOMAL PROTEIN CEP135"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20544:SF0">
        <property type="entry name" value="NUCLEOPROTEIN TPR_MLP1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="234"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="4"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="284"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00038123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3987763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="34531" checksum="43F830A1066A828E" modified="2020-12-02" version="1" fragment="single">DHEKEELLEQFRALSSEAEKLVTDARVSEGEVSNYKTELRQKMQEDLELKEKLRSLQVELDQRAVNEQSYEIQLSNLTKSLQTMEEQLRQSDEEKEGLLADLSAVRELCVKLDQMRDSLSRQVASKSMDKDELHQMFSDAQEEIDTLKSQVFHEKSNVKSLEGILSATRSREYLDKKSLEDTLDEVDQLRSRLSTSDKDKLLQRQELQTLRTTSERLSSEVSELRKQLISEKYEKERAARRKSAPIKSGKTATSRSSVDRGRGDSDFMQTLPRGRSSPLSFLGTRHDSVISPINHHDKDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA27</accession>
    <name>A0A6S7GA27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081988</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000858">
        <property type="protein sequence ID" value="CAB3985326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA27"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24656" checksum="7F3797DEAA5EC7BA" modified="2020-12-02" version="1">MAMDPGGHKTDEVRSKVCEKDLEENISKGKNSEQLFEDKGNIDKSILTASKDGLQMDMDDFKQFNEELSDLLLLSLSDYNSNIEDQVYFEGIREKYLECCADVKTRIGDLTQERLEMLSQKTSNSVKSRMSRLSRASSVSSKQAAANAAALKEKMFSLKRKQNIERQQEELKHHQRELEWQVEQEQLQGEINAAEVLHQALLGDTMLLSSNTQTYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCD2</accession>
    <name>A0A6S7GCD2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Repulsive guidance molecule C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017009</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001376">
        <property type="protein sequence ID" value="CAB3988763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCD2"/>
    <dbReference type="OrthoDB" id="10013795at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015026">
        <property type="term" value="F:coreceptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030509">
        <property type="term" value="P:BMP signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1000.10">
        <property type="entry name" value="Mog1/PsbP, alpha/beta/alpha sandwich"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040287">
        <property type="entry name" value="RGM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009496">
        <property type="entry name" value="RGM_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31428:SF6">
        <property type="entry name" value="REPULSIVE GUIDANCE MOLECULE B HOMOLOG DRAG-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31428">
        <property type="entry name" value="RGM DOMAIN FAMILY MEMBER DRAG-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06534">
        <property type="entry name" value="RGM_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Repulsive guidance molecule C-terminal" evidence="1">
        <location>
            <begin position="145"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="444" mass="51090" checksum="90B5EC2FDE203781" modified="2020-12-02" version="1">MVNSLIGNIIKLRVHVQRIVCVVFIVVLLTDCIRGLSLFSSDEECKKCNMENRELAEIFERKEIQNVRRKCVYVKQFLRCAEPLQGKCRQNLNFQGALTLMRSFRDEQNCSSMNITWDEAHMFLKSGQHTTKERQCRRPTFKPVYKICGLFGDPHLRTFSDKRHTCSVPGAWPLFANRYLTVQVTNIPLENSSRATATSKVTVIVRGLKRKCIKEKMYQARSFSLPTHFSDGTKSSGDKDCPTTVTQLKKRRRVMIDICPLKTKIIIRQVGKYLTVHMRVPKDLTRRKTIGLCQRGCPRIEQMNLDKMNRIDKVIASFYKEDKLSKRVKRQRQERARRMCAAAKVTGFYYKSCLFDMLTSDDATFVKAARKAMKDFRTINKDDEGRPIVNETARDFLKGLTKARTTVQTVGTTTLVPSSSGYSVHKSSLSVTLIMLVALLQVWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCY1</accession>
    <name>A0A6S7GCY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015645</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001017">
        <property type="protein sequence ID" value="CAB3986456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCY1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13528" checksum="3A4845595BECB9E7" modified="2020-12-02" version="1">MELSVGNYRGDVLALSKDESGISWLVECEQTAEKLSVEEQKIKEILKQYEKLKTLLDQKTQSRTLNTSTTLDTISTTLILEYATEDKEKPKMSLSSSMVVKMEHCLVCGTLCQQKHQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEI9</accession>
    <name>A0A6S7GEI9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P2X purinoreceptor 7 intracellular domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A002551</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001925">
        <property type="protein sequence ID" value="CAB3991834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEI9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="167"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="76"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3991834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="25522" checksum="A95CC5186041852E" modified="2020-12-02" version="1">MNFPDISLWYSPAAVSACDFLYPYSSSSESSSLPPGLFATSVRVDSGASDESFQPPQRKRSRVRGQSNQHRAGCASTSRGTRASGGETTTSRGTSRRGRGRGRLLAEENSEERQAQHEEQILELINGLNEETVRRLAVELLRRQTAVFADLVNGELPNNVNTDTPGETGPPESSDSPDWCKCGLCVATPTQAENKCCTQVVQECITIDPLFHQIVLDGNILDVAMSMGDLGKATGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJ07</accession>
    <name>A0A6S7GJ07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001947">
        <property type="protein sequence ID" value="CAB3991938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJ07"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="22080" checksum="9D961DC95811C083" modified="2020-12-02" version="1">MGTESDEEIFEAVREVEEAAKVPQMKARKTKPTADKSQTESKRDKLIELSRDGIIEKSASFIRKSNKDVVDRLYQEYESQRMSCASDFLSTLIISKFASILGSFGAVESSEKLSEELLSDKLLKDDVAYLTRTISPNIPFIGLISGGCTTAKHVVAHKWNKKEEPEEISEEAKHFLLNTECHTMSGETLGREQNSKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJV3</accession>
    <name>A0A6S7GJV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">WD repeat-containing 53-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001906">
        <property type="protein sequence ID" value="CAB3991723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJV3"/>
    <dbReference type="OrthoDB" id="2161379at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042453">
        <property type="entry name" value="WDR53"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44666">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 53"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44666:SF1">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 53"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20480" checksum="A9942F1A2DADCB96" modified="2020-12-02" version="1" fragment="single">FRKMNFVRTTRVGHKENILALDINTDGILSSVAEDGHCILWSTDGQILHDINVNNEHGLTSDEYPLNSVTFNLSDGNGEIGLFQFQGKSSTCTERLKCHDSEVSQVYYFNFGSTERCLVSGGNDGKINIWKEIQTGKNVKYELYHKILHDSKINWITCSSFKKDCLFVADQSSNVTVYELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRF0</accession>
    <name>A0A6S7GRF0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FP protein C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071129</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002071">
        <property type="protein sequence ID" value="CAB3992539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRF0"/>
    <dbReference type="OrthoDB" id="5971624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057251">
        <property type="entry name" value="FP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25298">
        <property type="entry name" value="Baculo_FP_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FP protein C-terminal" evidence="1">
        <location>
            <begin position="215"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="31792" checksum="775533DD76908ADD" modified="2020-12-02" version="1">MPPKAAKSSYLTADTLRELWADEFLPSIQKEFKAEIDKIKDEISALTAKCIEIEASQTFLSKEYDNFTDSLQITKRDVMEISSCLKVLEDKIKSIDDLVDEQDDIQQYIRRDCVEITGVPMLPDDKPKEIVKEIGQLMGIEIADHQISTAHRLPPTRKVKDKLIVKFVHRDTKDLFYKKRSKLVGKKSNDLPLVKREYENNNREFNNIYVNESLTARRRKLFGRVNEFKRSERWKHIWTINGKIMLREEDASRVFSFVHARDFDAFLNESF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRK3</accession>
    <name>A0A6S7GRK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002386</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002452">
        <property type="protein sequence ID" value="CAB3994393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRK3"/>
    <dbReference type="OrthoDB" id="10688807at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="PDZ domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22473" checksum="B517F632B6FCE279" modified="2020-12-02" version="1" fragment="single">MKTLRILPLLVVVFLSQIPHADAATCTTEFILAVVFGSVLALVLIILLLYCCIKRCLNRRSKPPASTKSLVSSVEEGGSRRFGNPSMDFSIGDVELEERRREEHRNICSQCHQRMIRANIEMPTAIENSGMTSSEERLPVNGSFSASGSLSPVDEPRIFVFVEKNPGESLGLYLVPFEDEPLTGLYVKTIVAGKSAARLQVFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRQ1</accession>
    <name>A0A6S7GRQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060909</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002089">
        <property type="protein sequence ID" value="CAB3992632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRQ1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6546" checksum="457BC6D0CE882BE7" modified="2020-12-02" version="1">MLVTEMKFSVEREWIKSVRSAENKPNYGMENIANKTDCWGKSLAINWSLLGHCLMAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUP9</accession>
    <name>A0A6S7GUP9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011647</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002338">
        <property type="protein sequence ID" value="CAB3993849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUP9"/>
    <dbReference type="OrthoDB" id="10520522at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="332" mass="38683" checksum="5622D346047BCACF" modified="2020-12-02" version="1">MQFLSYKSITDCQLRNLQLEIEASMKKLDMDVVGFTTDGEFNSLRTSGTKRPISIIEVIKNIAKGMKCKEITKYFTLDKEGNPLKSHPAVPPEDAKWCHDFMYDSDPPVTFHRACLILRRRLFPFHYDPYPWVKGRDETNVEVLKSLMAIYLHRAEVQNLRGLKEDPADFNSHLYQPELGGHTSGATVLKLLHNWHKAVDGRGLSEDQRSTYCEELKCWLLDDWVPWHREVKDYSQIDVNRPVKGICGLTREVIVGLVANLESRELRRIEYIQRNIKPEHPRSSSTDDVESFISLLHEILGLNFDLKQVFSELPKILNEFRKRTDKDLPFYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXY2</accession>
    <name>A0A6S7GXY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006526</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002604">
        <property type="protein sequence ID" value="CAB3995129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10256849at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="307"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="499"/>
            <end position="791"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="804"/>
            <end position="963"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="982"/>
            <end position="1259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="169"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="233"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="307"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="338"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="358"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="388"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="399"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="531"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="559"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="581"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="612"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="701"/>
            <end position="776"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="820"/>
            <end position="848"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="864"/>
            <end position="876"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="886"/>
            <end position="895"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="905"/>
            <end position="916"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="917"/>
            <end position="933"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="946"/>
            <end position="957"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="990"/>
            <end position="1005"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1007"/>
            <end position="1016"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1017"/>
            <end position="1035"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1037"/>
            <end position="1051"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1056"/>
            <end position="1071"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1107"/>
            <end position="1119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1131"/>
            <end position="1142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1150"/>
            <end position="1162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1238"/>
            <end position="1259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1431" mass="161506" checksum="A8A168985BB95794" modified="2020-12-02" version="1">MPASPDVIASTPKASVTSNAVRISSRAKGLSKTVSLSTPRRRKKKGESSDESSKPNDPASSKDKQSKKPIPIPNKKDASSSDGKGDNTQIKNPAVPDEKKKQRSSRISGKAQESDTGKVSDSDGSASKGNKGTNRKPGKVKESSMPEIVQVVSGDERSTVRTRSIRSNDAGKHNDQNKTEIEQRGKGGEENGMDNTDEMKKGRDNRSMDESGLGRSIDSGLGKSMDIQDLTMEDGHVKKGEHVKKEELVKKEGHVKCLQDISQDEPTVIHATQTFSQEGMDDHTHLDDEVFSKDLDEDTLSVIAKKSGVDDGAKDVNVDVDRDSSSGPFTKASVSEKTISKRKERGVEQDKGESSTPYKKKTTKPVKAKAGAKTRQIRTRAAAKKNASVGSSVSTSESDITITKQTSKARAKSAEPGSKASKAITSSRSVSDLDKRNKLGSGYNTEDWMMDYSDLERRTERKKALENASNVSKSRLSLISTVYRENYRTDYKFKRKKFENPYEFKTSPPAKRSPQGKKLLRPALRTYQLKKQAELQQKREKKGNKADKLLSYNDDEEMPEMKENEKSFSDIALEVQRKHRERELRKHDSESDILNRRRDSEPDEQSTTEILNDWKEKSKTRRNLEQGAFKKVEENEQNKENEKDGEGTTPVEAGDVLDPPADGIDSSQTLRFDDQQVLANVTAEPDQESLDGDSLSNLLKTIRDDKPAGFEENVKKNTEDHVEKNGVRRTKDKEIIDKERDKKAMENHEGEDKESSRKTNDESENLTKKSKRDTSLDRLVPPGIQNSLMDEESKMLLNHVFGRDDEDGDLWIGAKENKNQVDTSRSQRGTKPRANSNHENPAQTSARDTNTDRARGKQKSTGEEIVELDEIFDDGNGDSLLEPKQTKRNTAKRTRSASDNTARLPGEKQEAGRGDILEEDDVYADESADELEEMSPRPAKKRIPRDRKYVKEHKDGEGDLSSGTALILDAFKKNFERIIEDSDDCVDLPTKTNKSSTSRKQSETISKNKKTVKSSKRRESPLREDHLYHPHEPSKFEASTPQAKLSRSTDSGFFDKTLSSSSKKRTPSSAKGDVQDKTPGGTVSRKSRRFGCLDVQSTGHTPRRGYHSNDDKRTSRIQEEYESGEEDCNLFSHSQPASINQGSRKRKGSRERETGFKSESKMQKRNKGSAKDDDFEYPDSITELIKGMDDQDYVNESFKTPVDNQSMPIQPRKLFQSSDHSAPRKRQKVSRERQRANDDDEDDDDEDIENPFDDEDSIGEEMQTSFINLGKEVKKTIKQRQDYVSQIASATMKLITAKSEEMWSKQSSRRHTLMNEFTSCVNKYVEDHQQITSKRQQIEDDMITQVKNHLEALAKQRKEQEKCLRGIIKTQKAFTETFKSIEDAEQSQRMDFLDSLRKELKRYRDQAAQEVQKQEFENIKRRIQAMLGMSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H220</accession>
    <name>A0A6S7H220_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072176</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003314">
        <property type="protein sequence ID" value="CAB3998278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H220"/>
    <dbReference type="OrthoDB" id="5868365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003582">
        <property type="entry name" value="ShKT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01549">
        <property type="entry name" value="ShK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00254">
        <property type="entry name" value="ShKT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51670">
        <property type="entry name" value="SHKT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="164"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20131" checksum="55033666C31A63F4" modified="2020-12-02" version="1">MSCILKSCISASVAISLCVLLAALCTKDANAATIRNVLTTVAPRLNQTMTGNTTVTPNTNHTTPEGICSDRLGEGVKFTDLRCNNTTVTPNTNHTTPEVCEDENKSCTWWHKFGYCYNGYINGYMRKVCKKTCGFCGRTSGECKDKFFYCPSWIRYTGGKALACNLAFYQKRCPYTCNACNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBR1</accession>
    <name>A0A6S7HBR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Neuropeptide FF receptor 1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A059159</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003857">
        <property type="protein sequence ID" value="CAB4000523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBR1"/>
    <dbReference type="OrthoDB" id="5964875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695:SF9">
        <property type="entry name" value="LEUCOKININ RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695">
        <property type="entry name" value="LEUCOKININ RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0807">Transducer</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4000523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17470" checksum="08923D5511EFAAAC" modified="2020-12-02" version="1">MAMLYGIMFVTLRRPHVGSVNETQQRQLRKRKKLSLIIGIIVLMFFTCWTPWNVLEFIRVMDLMFGDPTRLATAFNYSLLAVVLNTAVNPILLNFMSSEFRDGFKGLFRPCSCQNSGTVGANTAGSAATVGNPEIELARSSPSAQLNRIVVENTSYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HE62</accession>
    <name>A0A6S7HE62_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Cytochrome b-c1 complex subunit Rieske, mitochondrial</fullName>
            <ecNumber evidence="11">7.1.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A059049</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>a quinol + 2 Fe(III)-[cytochrome c](out) = a quinone + 2 Fe(II)-[cytochrome c](out) + 2 H(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:11484"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="7.1.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </cofactor>
        <text evidence="11">Binds 1 [2Fe-2S] cluster per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="12">Mitochondrion inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="11">The Rieske protein is a high potential 2Fe-2S protein.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Rieske iron-sulfur protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.8" evidence="11"/>
    <dbReference type="EMBL" id="CACRXK020004833">
        <property type="protein sequence ID" value="CAB4004205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HE62"/>
    <dbReference type="OrthoDB" id="1637982at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008121">
        <property type="term" value="F:quinol-cytochrome-c reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd03470">
        <property type="entry name" value="Rieske_cytochrome_bc1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.102.10.10:FF:000001">
        <property type="entry name" value="Cytochrome b-c1 complex subunit Rieske, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="entry name" value="Rieske [2Fe-2S] iron-sulphur domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.270">
        <property type="entry name" value="Ubiquinol cytochrome reductase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037008">
        <property type="entry name" value="bc1_Rieske_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014349">
        <property type="entry name" value="Rieske_Fe-S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005805">
        <property type="entry name" value="Rieske_Fe-S_prot_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004192">
        <property type="entry name" value="Rieske_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006317">
        <property type="entry name" value="Ubiquinol_cyt_c_Rdtase_Fe-S-su"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01416">
        <property type="entry name" value="Rieske_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10134">
        <property type="entry name" value="CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02921">
        <property type="entry name" value="UCR_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00162">
        <property type="entry name" value="RIESKE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="ISP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81502">
        <property type="entry name" value="ISP transmembrane anchor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="10" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="11" id="KW-0249">Electron transport</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="11" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4004205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="29213" checksum="9E8C08B7054C4034" modified="2020-12-02" version="1">MLSSRAMSPGISRLLTATVVNVSHTVRNPTTALPSKEKFQIPSTGYDALFQSVNGCAPAATNKMFGKTQMRFSHTDVQVPDFSAYRRPTSNEKAQPLDADMSRRAFTYVVMAGMGITGLHAGKNAVTNFLQTMSASADVLALAKIEVDLTTIPEGKNAAMKWRGRPLFVRHRTAAEIEDSKNTNLAELRDPEHDDDRVQRPEWLILLGVCTHLGCVPIANAGDFGGYYCPCHGSHYDSSGRIRKGPAPLNLEIPEYSFQDENTLIVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKR1</accession>
    <name>A0A6S7HKR1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Cholesterol oxidase</fullName>
            <ecNumber evidence="12">1.1.3.6</ecNumber>
            <ecNumber evidence="10">5.3.3.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Cholesterol isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A063048</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="11">Steroid metabolism; cholesterol degradation.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.3.6" evidence="12"/>
    <dbReference type="EC" id="5.3.3.1" evidence="10"/>
    <dbReference type="EMBL" id="CACRXK020005173">
        <property type="protein sequence ID" value="CAB4005356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="9974421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016995">
        <property type="term" value="F:cholesterol oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004769">
        <property type="term" value="F:steroid Delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008203">
        <property type="term" value="P:cholesterol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009100">
        <property type="term" value="P:glycoprotein metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052542">
        <property type="entry name" value="Cholesterol_Oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007074">
        <property type="entry name" value="LicD/FKTN/FKRP_NTP_transf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47470">
        <property type="entry name" value="CHOLESTEROL OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47470:SF1">
        <property type="entry name" value="FAD-DEPENDENT OXIDOREDUCTASE 2 FAD BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04991">
        <property type="entry name" value="LicD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0153">Cholesterol metabolism</keyword>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0753">Steroid metabolism</keyword>
    <keyword evidence="7" id="KW-1207">Sterol metabolism</keyword>
    <feature type="domain" description="LicD/FKTN/FKRP nucleotidyltransferase" evidence="17">
        <location>
            <begin position="103"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="Glucose-methanol-choline oxidoreductase N-terminal" evidence="16">
        <location>
            <begin position="409"/>
            <end position="657"/>
        </location>
    </feature>
    <feature type="domain" description="Glucose-methanol-choline oxidoreductase C-terminal" evidence="18">
        <location>
            <begin position="827"/>
            <end position="897"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="15">
        <location>
            <begin position="33"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00038856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00049645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00049723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00049744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00049778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF04991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF05199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB4005356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1411" mass="157767" checksum="661597D4BED2CC34" modified="2020-12-02" version="1">MLLKTTCPKPVKINDIQMLHSLNKIVLKTTKPAPTTHAPTTHAPTTHAPTAPVPTMPAKLPTLTLDAQDSFYGFGCEENRYRKRLQMILREWVSLAKRQNISQYFICFGSYLGFVRNGDMIPYDMDLDVCMFRHDYYKLDPEESKRPLNLDDGEIHLLLHRHSPHPLSNTPRKDCKGNIVRSPVDDCAILNPHARLYNGALIYMDIFMFEDLGVKLWDEFRDKMHDRDAILPVKPCKYLELDTKCPNNAEKFLNVYYEFQSRYMLSNERIDNIKNIKPRKSITQRLFEESKNCLKVLYVVFCTLSDDATHGLKDHERASQNYHFVSRLELSITKLLFSEQKQPQLSNSVKMDPTKTKFPRLSSPTAELKPHYDVVVVGSGYGGSIAACRSAGAGRSVCLLEKGKEWLPGEFAETFLHAERDMHVHFGSHKFQTGKPFGLYEVYLGEHVSVLQGCWLGGGSLINASVGLDAEPAVYQKPDWPAAFTSDVENMLKTDRKHVTDMLTPTPYPDSYTHPPLAKTERMREGFAAFDIEDLHKHFYKAPLYVTFEDKERNHVGVPQPRCTACGNCCGGCNVGAKNTLNMNYIAQAKAYGAEIYTKTSLIEVMSIARESSSNEWSVHYKRLVKGMFELAEETIHASHVILGAGALGSTKILLRSKERGLNISPTIGTRFSTNGDMLTFSYDGAKETNSIGVQTKDLIDPQKKVAPGPCVTSVMDLRKQGGKLVDNFVIEEGTPPSSMGRIYSIGLTVAGKKDLDIAHKAMDKSLAFLCVSHDDARGKITYHTKTDDIYVSYKDVGYEPNFNVVNEAARKVTENLGGTFVKNPLWSEHLGKSVFTVHPLGGCPMAESGQTGVVNHAGQVFEGDSKDVLEGLYVVDGAIIPTSVGVNPTLTISCVAERCMRLLAEREGWHINYQFKHLSENAFVKHKPGICFTEKMVGKFCKSESHEEGTSCEFTLTIESNDVKAMLEFDPDHAAQISGTVTCPALSSLPLTVFEGRFQLFSSAKNDKADSPSKQMLYKMVLNGENNTTYSFYGVKNIHKNHFWEIGLRDTTVVFVKIYKGANFSGDILGTAKLYITIPNFAKQLATLEITRVQSIREKTYWLARYGQFFSKTLWDVYGPGVRAHNVNFDDTVLRQRRALMLRGCTPAVYDCVTKDEKTVQVVAHCAGSLVLFASLLSGALEGKVRNVVASQVAAHPIPAPFNSYKSSLRLPGVAQAMGVHGLAVDTDASFFSRVFSVFSRKVGNHLVLPYGERCESPLCHRITFIYGLLWKHKNLTELTHSTLHELFGYITTLVNAQLALTMRWQKLVSASGEDIYLPMSENGLKSPVYKEHIDRLNLPIRFIVGENNSCYLPESTLTTLNLVKGAHPNQNYSRIVISDHGHLDCICGKEASLHVFPYILETLDRYAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLB6</accession>
    <name>A0A6S7HLB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063918</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005599">
        <property type="protein sequence ID" value="CAB4006775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLB6"/>
    <dbReference type="OrthoDB" id="506498at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43861">
        <property type="entry name" value="TRANS-ACONITATE 2-METHYLTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26105" checksum="BF5FE50ABD1FA27E" modified="2020-12-02" version="1">MGCRFLETLNIKLVKKVLDMGCGTGELTKYIAEKVGNLGEVVGIDPDHARVKLAQENMKTVSNASFLVGTSESKFLNDNQDYYDIHFSNHAYHWLNNKDKATYVKVAFRCLKQGGLIAIQCIAELDDDIDKRLFENALGRPVSAKVHYAEEGSARQLLSDVGFTEVDVKIIPSVTYYSSFQIFADSFLAITKTNINDVPNKELLTEFKLKAIEKDGRVKSKYNLVQIKGRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXT7</accession>
    <name>A0A6S7HXT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">72 kDa inositol polyphosphate 5-phosphatase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006073">
        <property type="protein sequence ID" value="CAB4008270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXT7"/>
    <dbReference type="OrthoDB" id="2248459at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046856">
        <property type="term" value="P:phosphatidylinositol dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053321">
        <property type="entry name" value="IPP-5-Phosphatase_Type_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000300">
        <property type="entry name" value="IPPc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47039">
        <property type="entry name" value="INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47039:SF1">
        <property type="entry name" value="INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22669">
        <property type="entry name" value="Exo_endo_phos2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00128">
        <property type="entry name" value="IPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="185"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="185"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="214"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="254"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="272"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="634" mass="71983" checksum="7D88CC8BDCAC295A" modified="2020-12-02" version="1" fragment="single">MSEKVQGAITKQVFGESLDSLQGTKFDQSMPVGVNAEMLDKSVKSTDENSTENLKGAYFTPHPPEKPKDSNKKGPRRNKNKKRFSRRSNRVDLKSESSEDEKLYTNPEGLDHRTTGSKLPPLSKSIGNDFEARQNSETIDRAGINRPVDKNFGHVNPLTLNLKPLSPIKDNQKVVDNFKAKQSLERGKHELRERGPLKPYNPIERVSGLDDTNGRTNTGKVVNNLDSGNPTRPNNITNNEGNDVDDKSENTLTSVSSNDSSSDIDSDSQISPVNDTNIPNTQLSHKAPCDTPPAHHRHHHRSSLSLNSVRDYPQQVDRHSDTEAIRRGRAGNHQSNKAFWDKAKVVTLLPRVPADRARDRNSNFVKEELEKYLPERKLMVFVGTWNMHGEKQLPVFVDDFLLPECCKFMQDLYVIGSQESTPQRKEWEIKLQEALGPSHVLIYSCQFGVLHLAMYLRRELVWFCSGVEQATVATRPGHMIKTKGAIGLSLSIFGTSFLFINSHFTAHEQKCKERIGDYCLIRKTLSLPLNYPEPANHASDVTSRFNQVFWLGDFNFRVEERHGVVEKFLTQCEEDDDPNYEELVAKDQMTKLMKKNGVFEHFEEAKINFPPTYRFDINPDDPGHYSSVRVPSWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HY28</accession>
    <name>A0A6S7HY28_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025466</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006305">
        <property type="protein sequence ID" value="CAB4009023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HY28"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="115"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="392" mass="43851" checksum="F8BBB49E9F001B43" modified="2020-12-02" version="1">MLDSIATKYIRKWLEFPVSATLSNVLFPQNKFGLNIILPSTKFIQCQTVSRSALKYSPNVDINNLWAVTSTNKNVQYDIYKDTKDVLKAVRKENEQTLQNHLISQGSFFSSIMNHSTSTFNSLWSSVQSKLPKNIFNFTIGYINNILPTRKNLSKWGLSSTSDCSFCSSPETLLHVIAGCKTYLDEGRFTWRHDSVLNFLASTLTAVKNSTLYADIPGFMNPSVLTGDRLRPDLLLVTENRCLYILELTVGYESNLLVNANRKRQKYRDLINEQEADYDKDKIEGGRAGGRDRLRGGDKIKVSTSVGTLGYFVRCENSLGIISNAHVLKKEGCKVLSVPEGSNETPIAKVEKRIGSGESNGPDNLPNWGLKSFADLHAEPVTVILNASFREE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I1A4</accession>
    <name>A0A6S7I1A4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Very low-density lipo receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A019688</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endomembrane system</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007163">
        <property type="protein sequence ID" value="CAB4011476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I1A4"/>
    <dbReference type="OrthoDB" id="5987602at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00112">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.400.10:FF:000002">
        <property type="entry name" value="Low-density lipoprotein receptor-related protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1220.10">
        <property type="entry name" value="EGF-type module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.400.10">
        <property type="entry name" value="Low-density Lipoprotein Receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036055">
        <property type="entry name" value="LDL_receptor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050685">
        <property type="entry name" value="LDLR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023415">
        <property type="entry name" value="LDLR_class-A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002172">
        <property type="entry name" value="LDrepeatLR_classA_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24270">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00057">
        <property type="entry name" value="Ldl_recept_a"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00192">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57424">
        <property type="entry name" value="LDL receptor-like module"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01209">
        <property type="entry name" value="LDLRA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50068">
        <property type="entry name" value="LDLRA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4011476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="7637" checksum="4D088446BA694D09" modified="2020-12-02" version="1">MAWRCDGASECPDGSDEENCPPMARYKIMKCKKGSFVCSDDKSCIPAIWKCDGVKDCSGGSDEDPHICGNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I1Z9</accession>
    <name>A0A6S7I1Z9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sex-determining region Y protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Testis-determining factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A009992</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Transcriptional regulator that controls a genetic switch in male development. It is necessary and sufficient for initiating male sex determination by directing the development of supporting cell precursors (pre-Sertoli cells) as Sertoli rather than granulosa cells. Involved in different aspects of gene regulation including promoter activation or repression. Binds to the DNA consensus sequence 5'-[AT]AACAA[AT]-3'. SRY HMG box recognizes DNA by partial intercalation in the minor groove and promotes DNA bending. Also involved in pre-mRNA splicing. In male adult brain involved in the maintenance of motor functions of dopaminergic neurons.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus speckle</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SRY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006988">
        <property type="protein sequence ID" value="CAB4010987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I1Z9"/>
    <dbReference type="OrthoDB" id="6247875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016607">
        <property type="term" value="C:nuclear speck"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007548">
        <property type="term" value="P:sex differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd22028">
        <property type="entry name" value="HMG-box_SoxA_SoxB_SoxG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.30.10:FF:000002">
        <property type="entry name" value="transcription factor Sox-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050140">
        <property type="entry name" value="SRY-related_HMG-box_TF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270:SF161">
        <property type="entry name" value="SEX-DETERMINING REGION Y PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270">
        <property type="entry name" value="SOX TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0010">Activator</keyword>
    <keyword evidence="5" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="4" id="KW-0221">Differentiation</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0726">Sexual differentiation</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="HMG box" evidence="14">
        <location>
            <begin position="25"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="86"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="13">
        <location>
            <begin position="88"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00045821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4010987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="29124" checksum="ED9BCE6EE80D2C84" modified="2020-12-02" version="1">MATTTQAGVVATNAEQNTTKSEQHIKRPMNAFMVWSRDMRRKMAAEHPRMHNSEISKALGLQWRVLPEKEKVPYIDEAKRLQAEHSIRHPNYKYKPRRRKPKAVKKDTRFPFPFPPTADNGALKVPGYPQSMPPEGMYPYYQVPSTTYMQYHDPYQAARQATFYSQSQGNVHSPTGVSHGDISRDLAGYRPDVVQMHSAPPHLYPIDPINVPTQATSVYSGTTTSLSNPAMAVNSSNSENPQIHYQQYFAQRHINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3W2</accession>
    <name>A0A6S7I3W2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015081</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006809">
        <property type="protein sequence ID" value="CAB4010500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3W2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="9999" checksum="FFC58572723774CB" modified="2020-12-02" version="1">MKMNVMRPCIPVMKMHFVTTQLGHLSAFVKMVLKEMIHTAKISTSAIVKCMNVMAMQHVPIQEEVTTAPVMTVSVAMDLIVKVKYSCLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICN0</accession>
    <name>A0A6S7ICN0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A026528</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020008436">
        <property type="protein sequence ID" value="CAB4014763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICN0"/>
    <dbReference type="OrthoDB" id="5871067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="10">
        <location>
            <begin position="546"/>
            <end position="739"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="91"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="111"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4014763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="910" mass="105193" checksum="CE601C9FB58C49CE" modified="2020-12-02" version="1" fragment="single">MAHSINMLDLIKACEGESELDFLQESFVLTDEQKEAVLQQRIIFWTNAMAEDIERENPVGVDPNMMANWTEDQRRLFNEDWANDDGLCELEQMPEPPENQIGEGSKRRHASDHAPSKRQRPEEYFTIKSAKQVNVRKFRTTGTDYTVQFNPLDVHGVSNVMSTLNRAFQHLFDRLTSDMTPHDQVRLILNSNQLDKSISLPFLQRDRLTPERFLAAVERVVQSNDQFTLDDSVSVNVVHVEMPNGAGRKRRDVVNLESFLRKKDCIVQIKNKDDLCCARAIVVAKAKLDNDPQYKSIVTPRGTLQTRLAQELHESAGVPLGSCGIPEIKQFQAALPGYQLNVISKEHLNAMIYSGPESDKCLYLYHHDNHYDVITSMPAFLARKQYCHKCKKGYDKITDHPCDECFNRHKDDAGPAKSLCRALIKCKKCKRVVTRASLRDHHCGKVRCSTCQKYVKPENHQCYLQPVKAKKTRSTEEGNDLLDDDVAVENDVEDTKNLMFFDFECTQDDGKHVPNLCVVQNESGDEKVFSGPNTKDEFCEWMFQQENANTTFVAHNFQAYDGYFILQYLYKNGITPGIITRGAKILSLTVPEMNIKFIDSLCFIPMKLAAFPKTFGLTELQKGYFPLFFNRAENQDYVGPLPDSKFYDPDGMSSDDREKFYSWYNEQVRRQYEFDFQAEILRYCQSDVDILRRCCLEFRELFSQITDVDPFASCLTIASACNLVFRKTFLQENTIAVIPPCGYKSENKQSVIALNMLAWVAQRDNIAIRQARNHGERRIDKYLVDGFNVETNTVWEIRGCLWHGCERCYARDTVNPINHMTMQDLKQRTLEKIQFLKNNGYNVVEIWTCDIERQLATESEMKDFFDNFQISEPHEPRHAFFGGRTNATRLYYDVQPEEKIRYVDFCSLYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHW4</accession>
    <name>A0A6S7IHW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Transient receptor potential cation channel subfamily A member 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A044146</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009471">
        <property type="protein sequence ID" value="CAB4017267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHW4"/>
    <dbReference type="OrthoDB" id="194358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005262">
        <property type="term" value="F:calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098703">
        <property type="term" value="P:calcium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024862">
        <property type="entry name" value="TRPV"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10582:SF33">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL CHANNEL PYREXIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10582">
        <property type="entry name" value="TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0107">Calcium channel</keyword>
    <keyword evidence="4" id="KW-0109">Calcium transport</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="12" id="KW-0407">Ion channel</keyword>
    <keyword evidence="10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="11 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-0675">Receptor</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 14" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="169"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="203"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="288"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="356"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="426"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="domain" description="Ion transport" evidence="15">
        <location>
            <begin position="207"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="599"/>
            <end position="676"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="634"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB4017267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="697" mass="79675" checksum="55CA2C6E62EA10AE" modified="2020-12-02" version="1" fragment="single">DLSARTYGENQTPVHYAAKNDADNALQELINIGADVNCRDYKQRTPLHVAAELDRSETAKLLISLDVPAGVCDENGVTAMSLMVSKMPPVAKEALDQFHSLDRANRKQYYYLNHLEPGKPGEDGHVFAKTPLEEAVRYKQMDLIMHPVFKRLIQVKWEHFGKTGSMIQVFVQLLYCLLWTVLGITLPRTAASSWSYYDPPSKYWWRIVLESLAVSITALFIWQEIAEVHQSRKQHERWKNWRIEELNRDLKYCHPRWPEECKYIEMEIASISSQGISYFESYWNYFDWVTYFGILTVILTRILSVAIDNSTANELHPKIMSISLIFIWLRLMKVFRAFEALGPFIVMIGHLLKDTLIFGFLYVMFYIPFVCAFWINFGGDVNAEKMKQAGQDSEGWRTFNNLMYSVWEITVVGNYPWDSLLVIDRIMAQILCGTYLAVSAIVCLNLFIALMSDTFQRVYDNANANAVMQKASTILSLETDMSGRRRDMFMNHIHTSCAPEEMYYDDDSVEPDSGELEKLTHQINDKVVEVEEMVKTSLEERKNETFQNKQSVDSLREDLLQVIERQNYEMTAMKRDLTDIKRLLAQTLVQGQVQTSASITLPTNAMPARTEGPGSSKPHKHHGKASRMGPQDSIHQDANRADDEPGRSTLLPQVDSRRRHIATGTSSLPGIDIRRQPARDVALVAPRQDPGTNGSAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRN0</accession>
    <name>A0A6S7IRN0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Leucine zipper transcription factor-like protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A009033</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Regulates ciliary localization of the BBSome complex. Together with the BBSome complex, controls SMO ciliary trafficking and contributes to the sonic hedgehog (SHH) pathway regulation. May play a role in neurite outgrowth. May have tumor suppressor function.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Self-associates. Interacts with BBS9; the interaction mediates the association of LZTL1 with the BBsome complex and regulates BBSome ciliary trafficking.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LZTFL1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006082">
        <property type="protein sequence ID" value="CAB4008302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRN0"/>
    <dbReference type="OrthoDB" id="313412at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903565">
        <property type="term" value="P:negative regulation of protein localization to cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026157">
        <property type="entry name" value="LZTFL1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21635">
        <property type="entry name" value="LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21635:SF0">
        <property type="entry name" value="LEUCINE ZIPPER TRANSCRIPTION FACTOR-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15294">
        <property type="entry name" value="Leu_zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="157"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="161"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="175"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00026004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4008302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="42758" checksum="97A7D6571A039E27" modified="2020-12-02" version="1">MKPLVKAVKSAHHENKDWKREMFKFLLNYRATPHSTTGKSPSELLYNRKIQTKLPQVTVENDSSLHQEVKERDERLKKNQKEYADSKRRVKCADIKKSDLVLVRQLKANKMSTKYDPIPYEVTNRRGNRITAIRNGKYITRNISFFKKYHPRHGRSLESTEIMDEENYSSDEDVHEEHEQYDGLRQKDCPRQNNGQRQDDGPRYPARKRQREINRLQEENGRLKEKIKISETMAASVLDEKSKLKADLAKTQSELLTMSQSADGDELKELEKRMESVKLEMESVRKASSAGGDNASEITDQLTNAKHEILRLQHDLQEKEKELTKKFNETTQYINMKQMLQTKNEQMKKLRQRLKKYEPDFES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYQ1</accession>
    <name>A0A6S7IYQ1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Helitron helicase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002489</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005557">
        <property type="protein sequence ID" value="CAB4006618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYQ1"/>
    <dbReference type="OrthoDB" id="6141723at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="61"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="393" mass="45996" checksum="3CF6842345FEAC7E" modified="2020-12-02" version="1">MCIENIFFKAKKLQMKLLLGQSQVALRKCKLGNRTLNAGQLKTPEGLESLIRHDEGYKFLRALRGSPPYFEKAKKDLFAMIRQLEPASLFCSFSSAETKWNDSLRILGKLIYHKDYSDKELDNLTWDEKCRLIQSDPVTCARHFDYQFNTFLKFVSDIAPVGKIKDWFYRVEYQQRGSPHIHMLIWLENAPVFGVDKDEDVTAFIDKIITCGKPENDSKLLEFVNRQTHKHSHTCRKNAQKICRFNYLQPPMRSTQILYPLDDGTSRTVIRSRKDVWKDIKNKLNDLKEGEDVTFDQLLKDLDVSEHDYILAIYRSSLNCPTIFLKRSPNELRINNYNPACLQAWRANMDIQFVLDVYACAMYILSPTFQRHKKARVNCYAKFVLKLNREIPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1C6</accession>
    <name>A0A6S7J1C6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ataxin-10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A088870</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">May play a role in the regulation of cytokinesis. May play a role in signaling by stimulating protein glycosylation. Induces neuritogenesis by activating the Ras-MAP kinase pathway and is necessary for the survival of cerebellar neurons. Does not appear to play a major role in ciliogenesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ataxin-10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013744">
        <property type="protein sequence ID" value="CAB4025665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1C6"/>
    <dbReference type="OrthoDB" id="379794at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031175">
        <property type="term" value="P:neuron projection development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051374">
        <property type="entry name" value="Ataxin-10/CTR86_families"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019156">
        <property type="entry name" value="Ataxin-10_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13255">
        <property type="entry name" value="ATAXIN-10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13255:SF0">
        <property type="entry name" value="ATAXIN-10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09759">
        <property type="entry name" value="Atx10homo_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00045173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4025665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16252" checksum="A3895ECBAB405146" modified="2020-12-02" version="1" fragment="single">ALRETSSEENRKFFSDLSHFSNPSDNIANSAHPAFGFKRSLIQLIANVCYLNTMNQDCVRQMDCIPLLLDHCNIDDYNPYICQWAIFCLRNVLENNQGNQQVIRSLTQLGLASNTRLAEAGFVVEETTDGKLRVVGKQNRDTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1Y0</accession>
    <name>A0A6S7J1Y0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007164">
        <property type="protein sequence ID" value="CAB4011481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1Y0"/>
    <dbReference type="OrthoDB" id="6003429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="24844" checksum="55CA7BD012FDFA81" modified="2020-12-02" version="1">MAESCVQNSSDAYCKNDSLDYDLVEILRYKYENCFAYDGKRVRWTDSFEMLKIFTKHAIEQPGNWLSPGGKYKKFTSSNSDLIFTWNYELGTLSFKGEMGDRLKELFITVCTMGKSLPAERSGFEHVALNNDKPLRVRGTKTKTAQVSTDNDSARSSNHVSSVQKSKCDCQCGLLAAELEGVKLDLVILQKNVDTRITSAQKTHDDEVTQLRHIYAKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J2U5</accession>
    <name>A0A6S7J2U5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050261</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007259">
        <property type="protein sequence ID" value="CAB4011761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J2U5"/>
    <dbReference type="OrthoDB" id="6060011at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030414">
        <property type="term" value="F:peptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.75.10">
        <property type="entry name" value="Elafin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036645">
        <property type="entry name" value="Elafin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008197">
        <property type="entry name" value="WAP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00095">
        <property type="entry name" value="WAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00217">
        <property type="entry name" value="WAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57256">
        <property type="entry name" value="Elafin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51390">
        <property type="entry name" value="WAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="210"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="217"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="445" mass="49832" checksum="98D62C7E8942963A" modified="2020-12-02" version="1">MTATDEKQGNNFKRQSRVNPGMCPRYSSPGRFERCADECQTDADCGKTKKCCRSTCIGMKCASPARYRKARDSCVKQNIVIKYGTVSSDTLTLNVSEARAIMQQLVDIGKKELNSKCRSKATLRLGTVQVSESSGYTIEASLEYLVYAGYRRWNFATCVANANLFQDIVNDPKKAPAIQGQYSSYGATNVTKGSSGLSVASTCCNPGSVVNRGSCPNSNNNNSNSRSNSNSSNNNNNNNNKQRQQRQQQQRQQQATATTTTTTSNGNNNNNNNNKQRQQQQQQATTTTTTTTTTTTTATTTATTTATTTATTTATTSNGNNGNNNNGNNKQRQQQQQQQQATATTTSNGNNNNKQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTTSNNSNTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3I2</accession>
    <name>A0A6S7J3I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073386</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013020">
        <property type="protein sequence ID" value="CAB4024411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3I2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="14639" checksum="3ACE5AE32F26AA75" modified="2020-12-02" version="1" fragment="single">MQYTGPSKKFKSGPVDMPMVMYFCDEMAKGGDEDFFSALKKLGILAEVLANRSEYYKDFAITAKEHGHNELAEMLAVSPRELPCDGDMETLTIGKLLDAVQQERSLATSDPVSSDSDDDSNSCSSGYNGDCDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J6K7</accession>
    <name>A0A6S7J6K7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Solute carrier family 35 member E2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A068665</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007708">
        <property type="protein sequence ID" value="CAB4012992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J6K7"/>
    <dbReference type="OrthoDB" id="6418713at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004853">
        <property type="entry name" value="Sugar_P_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050186">
        <property type="entry name" value="TPT_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11132">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03151">
        <property type="entry name" value="TPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4012992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="39617" checksum="5ED83F36FF7D939A" modified="2020-12-02" version="1">MQPTIKHLHQENYANQLNSNENQQTYIEDTIQNLHGSNIYVKQAILLGLWYLFSFFTIVLNKYILTVLGGQASLLGRTQMLMSVIFGGFTIYVLPCCVQRSGVEERKMKFIRNMSILGILRFGTVVCSLISLKHVAVSFTETVKASAPLFTVILSFLILREKVGLLVMFSLIPVMAGLSLCSANEISFNVIGFVAAISNNIMDCIQNVFSKKLLSGESSYSPPELQFYTGTAALLLQIPYWIYTIDFQESFTKPDYFYIGILMLDSFSFYLQSVTAYGLMALISPITFSVANTVKRTLLIWLSVVVFANHVTWLSGLGTMIVTLGVVMYQRAKQVEAADKHKQQQDQNHRASP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHZ2</accession>
    <name>A0A6S7JHZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Poly P3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A074063</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016760">
        <property type="protein sequence ID" value="CAB4030291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHZ2"/>
    <dbReference type="OrthoDB" id="5982837at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd22343">
        <property type="entry name" value="PDDEXK_lambda_exonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.720.30">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003034">
        <property type="entry name" value="SAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036361">
        <property type="entry name" value="SAP_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034720">
        <property type="entry name" value="Viral_alk_exo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47526">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47526:SF3">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02037">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01771">
        <property type="entry name" value="Viral_alk_exo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00513">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68906">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50800">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="532"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4030291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="532" mass="60131" checksum="5946F592DE18511B" modified="2020-12-02" version="1" fragment="single">MADQQSLQGCKKDELKTWLKARGLNVSGRKQDLITRVTKAEQDGTELPVNREMREKNEREKRMINKLKTPFEDLPNPKTLNNWTEDPSYLPVITVNEIKDYLVYGKCKFYAKEDMKCFKQLKAFKFFMDGHVQDIKLSIINATSNYCFVKAKILPSMRTDRVYETWISVVKETAKVLSADCNCTAGLGEACNHIAALLFAVEDYAKTYNQPSSSSTLCTSKPCEWNKPRSRKLSPKEISQMRPVKHQYGKKPRLPAVPSSEGKENTEMSYDISCDNNVGAYEVSTTKVLESPTTPEVLMSPTTPSPIGIIPNNHMSTVMTISCPIQSPLKNATRIPLKSLQQNILTVRESQIAQVASSSTSKYIPIKLPLIDDSVREMELPENLSEDARQFFNDSVKVDLEKAFKIESSTRNQSNSVAWYNHRQYRLTSSNFGKVLKRKKEDCSKLVNAMTTGATKNLNVSSLRYGCENEDPVAKYYVQYQERHGHTGLQIFPCGLVINPKYSWLGASPDRVVFDPTSNPPYGCVEIKCIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JMA0</accession>
    <name>A0A6S7JMA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Integrator complex subunit 9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A075292</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007366">
        <property type="protein sequence ID" value="CAB4012068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JMA0"/>
    <dbReference type="OrthoDB" id="5600060at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032039">
        <property type="term" value="C:integrator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034472">
        <property type="term" value="P:snRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022712">
        <property type="entry name" value="Beta_Casp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027074">
        <property type="entry name" value="Integrator_9su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048660">
        <property type="entry name" value="IntS9-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46094">
        <property type="entry name" value="INTEGRATOR COMPLEX SUBUNIT 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46094:SF1">
        <property type="entry name" value="INTEGRATOR COMPLEX SUBUNIT 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10996">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21382">
        <property type="entry name" value="IntS9_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01027">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4012068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="508" mass="56101" checksum="2E67DCAB64F880C7" modified="2020-12-02" version="1">MHEMVTFAERVPKLANGTAWKRAEIKRLLPAPLKDSLNVESWCTLYSIHDIKSSIAKIQTVGFSEKLDLFGVLQLTPVSSGYSVGSCNWIIQSEYEKISYLSSSSSFTTHPLPFEPSCLRGSDVLILSGLAESPTSNPDVMLGEFCTNLANTIKGGGNVLVPCFPSGVIYDLFECLQSYMDSAGLTFTPIYFISPVADSSLAYSNIYAEWLCQSKQSKVYLPEPPFPHAELVKNGKLKHFPNLHDGFSNTFKTPCIVFTGHPSLRFGDVVHFVEMWGSSSANTIIFTEPGFPFLDALAPYQPLAMKACYCPIDPRLNFGQVNKTVREMKPRFVVIPEEYTVPPPMLPHRTDLVVQLDNDSQVLPISYPHVIDIPVTRSYEKVSLSNKLATTLCPQEVRAGTAVAMVNGTLQNKNNKYTLQPFERSSEGSSSNKCLCGDLMVDEMVASLAKRGITDVEVEQTPSGHTVHLNDDDAVVTLEKGSTHIITHGNDQLRKTIRDALLDCLSQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JNL3</accession>
    <name>A0A6S7JNL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009878">
        <property type="protein sequence ID" value="CAB4018152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JNL3"/>
    <dbReference type="OrthoDB" id="7476844at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="874" mass="101665" checksum="15E44F540A42399E" modified="2020-12-02" version="1">MNNQNYVFCSIYFPSTNSNLADFIDTLTCLNAVCTQLSYREEQIIIAGDFNVHVSDPRSGQRENNRGKLLLEMFAEFDMFPVNVDMPCMGPLFTYYSSCGNSVVDYIFASKNIERIVKCVKVGDEHPCNLSYHLPLIAGIEISAGINCHESSNNLENEYERIAWRKCALEQVLEYPRRLNDTITTMDDTLYTSDDVENYYRLICRSIKSSDKCLPRAKYKKSIKPYWNNELKRLKTACMELHKKWTSEGRPRGEQYESFRLYKDAKRLFRKEQRKMVRKTEENDFKELSEASEIDHIRFWKYVNRRRKKKRSTNVLTTNDGRTISNPEEIADVWANYYEKLLTPEENTNFDDDFREYIDIEVSDITKNSLAEFDDIFQDPITLKEIEDVLTELPNNKAPGDDGITYEHIKYSGDILAAKLLILYNKIIELEYIPRQFKLGIKIPIPKGGKSCASKFDDHRGITLLCTFNKIFERLVLNRLQNKIRCRPHPLQGAYQAERDALTTSFVIDESTKHCCEENDKVFACYVDVSKAFDKVWINGMLFKLYHNVNIRGKCWRLIKSWYSDMEEYVFYNGKRSRQYDILQGVRQGGVLSPWLFLHFIDDMISELEKLSTGIVIQNLFVGSPMFADDLTLMSRLKRGLDNMLVQVHNYSLKWRLTFNEKKTVVLTFGEKQANISAVTNRTWLIGGKEIMEKSIWHNLGKDWHTDVASLIPILEAAKKGQAIGIGLANLGCRFNGMNPLVATKLWARIALPKMLYGAELWTLNREKLSKLEKVQNIFLRVCLGLLSGTSGSAARGLLGLWTVGAEIDKRKLLFLRRLICASEDCVHRRVFMIRLNRWRWNPNKITGFVPDLVRILQKYCLWEYMVWKFSQQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRJ6</accession>
    <name>A0A6S7JRJ6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A054308</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010196">
        <property type="protein sequence ID" value="CAB4018851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRJ6"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="82"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="453"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="459"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="505" mass="57294" checksum="E11B4C4CC7B33835" modified="2020-12-02" version="1" fragment="single">HVPNEFLVSEAEVYRSLSSLQVAKSIGPDELPNKVLKEFATELSPIIQDIYNESIKEAYIPDLLKSSIISPIQKVTPPQSIESDLRPISLTCNLAKIMEEFFCRRFLSQLTRKIDPRQFARKGHSTTDALLFLLQPVYEALDSGNACARFFFANISKGFDRIDHHIQMQELMELDIHPGTKLGVILFSVMTNKLISDWHLRTKFVDDTAALEIIPRNSISYLNHTVDELHQFSVNHYMSLNPLKCKEMVINFMNNNNSIMKPFVIGSNVVERVTNYKLLGVQMSEDLKWNKHVDYIYKKLDNDENTETVNDSMYGKRTGLKGAEIASFDGKPVKWPYFCGIFSSLVNKNDKPMPAVKLAHLNSCLTDRVRAVIACLTGEPGDYDRAVKQLTERHGDPREIIDAHLRRISSWPHIKDKDREEFQRFGDALQAAVFALDKPDNRHELASIPLCTFSKPKHEKPPDDPPKTPEENKAMHCGKAQISTPISERVALKTVSVPFIDDSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JX79</accession>
    <name>A0A6S7JX79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphonoacetaldehyde hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A056308</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023177">
        <property type="protein sequence ID" value="CAB4037515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JX79"/>
    <dbReference type="OrthoDB" id="40579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008967">
        <property type="term" value="F:phosphoglycolate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050194">
        <property type="term" value="F:phosphonoacetaldehyde hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019700">
        <property type="term" value="P:organic phosphonate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.150.240:FF:000006">
        <property type="entry name" value="Phosphonoacetaldehyde hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="entry name" value="Putative phosphatase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01375">
        <property type="entry name" value="PhnX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050155">
        <property type="entry name" value="HAD-like_hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006323">
        <property type="entry name" value="Phosphonoacetald_hydro"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01422">
        <property type="entry name" value="phosphonatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43434">
        <property type="entry name" value="PHOSPHOGLYCOLATE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43434:SF19">
        <property type="entry name" value="PHOSPHONOACETALDEHYDE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0704">Schiff base</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4037515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="25712" checksum="92070EF8E3C50BF6" modified="2020-12-02" version="1">MEEAREPMGRHKKVHIRMITQIDSVRKRWKEKFGVNPTEKDVERMFENFVPMQLACLDEYAEMITGAVDTVDILQKDWGLKIGSTTGFTTPMVDVLKKIAEENGYVPDCYVAADEVPQARPYPYMVWLNAIRLDVNPISAIVKVDDTTDGVREGTSAGCWSVGLARTGNYVALNESEINELSDEEYELKIAKSYETLANAGAHYVIDSIAELPPVIEDINRRLAAGERP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXX7</accession>
    <name>A0A6S7JXX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011302">
        <property type="protein sequence ID" value="CAB4021172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXX7"/>
    <dbReference type="OrthoDB" id="5989585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038822">
        <property type="entry name" value="Vertnin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16081">
        <property type="entry name" value="VERTNIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16081:SF0">
        <property type="entry name" value="VERTNIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13472" checksum="E3AF7131610BFBB8" modified="2020-12-02" version="1" fragment="single">MAVPQEYEIIRDLDTVREAIIAENRGILLFLVNKYRQYLPREIYKTEHIPSSRVDQLSCCLVPQDISPNLVPLKSTGNGNCLFNSASILLIGNESLHGVLRLLTAAEIFLHYTFYASHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K144</accession>
    <name>A0A6S7K144_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081819</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021022">
        <property type="protein sequence ID" value="CAB4035400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K144"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18841" checksum="F3D1EA9E3BE7CF9B" modified="2020-12-02" version="1" fragment="single">MAEYLEQNIEDVKNYVQKNYTYRQISDIFKQHFPGVSRGFSERNIRLFCSKHGIRKLDNFEVDTIIQQSISELSKFIDDNKLLSSTISAYRKGQSTTTVMQAIRDDITKAMSRGEVTMMIFADFSKAFDTIRFKNLISKMSKLGFCKDFLTWTLNYVSHRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7E6</accession>
    <name>A0A6S7K7E6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054953</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025461">
        <property type="protein sequence ID" value="CAB4039488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7E6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11952" checksum="86AFB2B6E32A6EB1" modified="2020-12-02" version="1" fragment="single">MARRGPYKQYELDTSIAVPKSTRCDRRKRCRMDHLDGYNNHDIFEEQNLNDVLFEQENIAPGVDENIEDDVHVEDDIFEDDTVGRQDLHGDSINKVEVQMDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8L7</accession>
    <name>A0A6S7K8L7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023985">
        <property type="protein sequence ID" value="CAB4038250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8L7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7214" checksum="DA2E85D8F24571CE" modified="2020-12-02" version="1" fragment="single">KSESKVPRLKSLFTFDEHITEFEKPVGRRTRSESAAEVARLKLSSLNRLGDSDSEDSDSEVSEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8Q3</accession>
    <name>A0A6S7K8Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Contactin-associated -like 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A048447</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027737">
        <property type="protein sequence ID" value="CAB4041087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8Q3"/>
    <dbReference type="OrthoDB" id="26719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00110">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001791">
        <property type="entry name" value="Laminin_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050372">
        <property type="entry name" value="Neurexin-related_CASP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15036:SF49">
        <property type="entry name" value="AXOTACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15036">
        <property type="entry name" value="PIKACHURIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02210">
        <property type="entry name" value="Laminin_G_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00282">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50025">
        <property type="entry name" value="LAM_G_DOMAIN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Laminin G" evidence="3">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Laminin G" evidence="3">
        <location>
            <begin position="124"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="EGF-like" evidence="4">
        <location>
            <begin position="301"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="2">
        <location>
            <begin position="327"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4041087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="513" mass="58571" checksum="7FFCE34A3B3E46F9" modified="2020-12-02" version="1" fragment="single">MAEEFSFFFGDKLCDNQWHSVLITREKHKLTIHLDKQPTKIVNIKMSKRFETQFILRINIRIYVGGTWKKTNERGKTKIVKNFVGCLSDVLFNAVHLISDARQKKKGYTTQGAISYTCPAREYKPIGFLNERAFLKVPSPDRNNVSVQFKFRTYDKNGILMFKDGQKVNVWLYLENGKLKFDCYITGKRVVPLDTDKWMRDTDFNDGEWHSVKASLDPFMMIFQVDSGIPVDADAHTVLLNQDRNLDFENFTHVGGGTYYKGMYGFVGCMKDLRVNGAKINASALPKEITAVNVELGKCSLQSHCHPSSCQYKSSCEQLSNNFTCHCRRFYSGRYCQVPMFKATCQGYKELGMKEDSYCRLDPDGKGPLPEFKVLCNMTKSEDAVTIVNHTTSGRQVNIRDEAYRYSPSARSWVHKLNYGHGDDFKNLRAMIDESDHCRQYVEFNCINTKFLTPRKNDLPGAYWVSDTGVENHYWGGAKLGGVTCACGTTSSCHDKKKMCNCDTGDGVWRQDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KI17</accession>
    <name>A0A6S7KI17_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015039">
        <property type="protein sequence ID" value="CAB4027823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KI17"/>
    <dbReference type="OrthoDB" id="5985994at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034632">
        <property type="term" value="F:retinol transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026612">
        <property type="entry name" value="STRA6-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14752">
        <property type="entry name" value="RBP_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13991" checksum="D1BAECC1FB6431BE" modified="2020-12-02" version="1" fragment="single">RRNWYYIASFFLNVHKIQYFFTMSNITFTNGTSTGVECDVDKTFLPHLLLIPAGIIITILAFLQQRRSFKKEVWGGRPGLVVPIDFLGMDHDRLAIMCVFGAATGSIVLLISRDISGYSNAWGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KKK1</accession>
    <name>A0A6S7KKK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083830</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015020">
        <property type="protein sequence ID" value="CAB4027792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KKK1"/>
    <dbReference type="OrthoDB" id="5971203at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="36814" checksum="42698BA52C9EB84A" modified="2020-12-02" version="1">MCSKEEPNFYFWKSMDGSSTLGEYFDPAVDCSDVVDRVPDATDGFYWIYLKEVKTVVKAWCDVTTDGGGYLLVARKNDSVTWTVPSSKETVDPFGKPHWSSIFGNMKMLDIRFQFSTTSEFKDTKAHWSFRLANKRRFRELLIRDRGGCTEHNPGIGDIAFVKDLQIEKIVNRNFHCSLFGGHLSPSIGWGMMNKCLQTPCAGFAFLPGISLRLDDSGSFSYSAKDNFTRSGIWHSSTAFMGCSHGKCCACYGPKGGTDNYCLKNCTAINGGKVAKQVVTWVWIRSSLPKRVWRKCIDFTITGQDGKVENYRLDEETGLKEKVNENV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KL56</accession>
    <name>A0A6S7KL56_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A016244</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011320">
        <property type="protein sequence ID" value="CAB4021208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KL56"/>
    <dbReference type="OrthoDB" id="5986507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd15489">
        <property type="entry name" value="PHD_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776:SF4">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="4">
        <location>
            <begin position="242"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4021208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="55898" checksum="FC5FA4D535D94AD7" modified="2020-12-02" version="1">MADSYEMESMDESYKHSDKYFEGLIYCTYRQESSYRITKSLISTANSATDSHPARIVVITHSHWGGNHNLFFKYKQCLLIITNTSYSSCKFKRLKRPLPYYNNSNATHRLLLIIAGVEQNPGPNSKPNEVQRKAPRCSACEKPVAKNHKRFVCEVCHDFTHARCSNTAINLKLFCSSSPKTWTCQKCLFTALLFWNANISETSIPDCDSFATQDEHSLVLQAKSDQLRIMHLNTQSMMSTFDEFILTINQFPFDIITLSETWLKDNPYLLDYVSIPGYVNIFRNRDHIRGGGVGIYCRDHINFKRRQDIEKLQPDMEHIWLEIPGRNKNSKLLLGVMYRSERILSKQSWLDGFESILSYLSTQWDGLLLITGDMNVDLLNSSSPLTKQYLEILDMHNLQQMVTKPTRITATSQTLIDHFITNHPNRITHTDVIHCPLVSDHSAPYVCVNARVTRFLPRYKYIRDERTYTEAAFAEDFRNIPIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KSB2</accession>
    <name>A0A6S7KSB2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072438</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035164">
        <property type="protein sequence ID" value="CAB4044501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KSB2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12910" checksum="7AF84B791826E033" modified="2020-12-02" version="1" fragment="single">MPAPHNIINIPRDRQIQRTVVLLHQNLVNIHAFDAATKQSIKIDNREYITLTPNRSKPTTLRVYHVPSEGPYFASFTIKNLRTQAIFIQTNFQPSGQFLRLDPGKVMSRNLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KU33</accession>
    <name>A0A6S7KU33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">V-set and immunoglobulin domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016710">
        <property type="protein sequence ID" value="CAB4030202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KU33"/>
    <dbReference type="OrthoDB" id="10015491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46013:SF4">
        <property type="entry name" value="B-CELL RECEPTOR CD22-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46013">
        <property type="entry name" value="VASCULAR CELL ADHESION MOLECULE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24077" checksum="4AC2591F8D1E3F7D" modified="2020-12-02" version="1" fragment="single">MRKKLRGVPGVVAVAKKSPIKEGKAYMKGKIQKKPNEAYYDIGSTVNISCEAEKNTNLYEIIWYKFDSQGYPIKLKSALNGPGILTLTLNSLSAKDSGSYKCEVTRPEVNYYNSRFINISVKVKPEIQLAKTYLFTEKGMIINCSLKNADEVNPPQVKYTWFSCDSASCDEESAKLKIDSYSLRLNSQARAIMKYRCIAQNAAGSDSKIIEVIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L576</accession>
    <name>A0A6S7L576_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007116</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020268">
        <property type="protein sequence ID" value="CAB4034613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L576"/>
    <dbReference type="OrthoDB" id="10003658at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12780" checksum="06267BCBB381A3BD" modified="2020-12-02" version="1" fragment="single">TAPSNDWANPVERVMSIVNIGLQGIGVMRRKMSDEFEKAIANAGSVKEMRDKVNTPELKKQLSESLQFPVDLIKSQMVRLSLKDKSFQVFDPAEDEKIDALWKLCLDVDKSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVN3</accession>
    <name>A0A6S7LVN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060606</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039697">
        <property type="protein sequence ID" value="CAB4045479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVN3"/>
    <dbReference type="OrthoDB" id="5322683at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049:SF1">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="268"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="285"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="371" mass="40170" checksum="1667DC3A2A9F92EE" modified="2020-12-02" version="1" fragment="single">MPIFPPFLGDAEDKVPDAEDKVSDAEDKVPDAEDKVPDAEDKVPDAEDKGPDAEDNVPDAEDKVPDAEDKVSDAEDKVPDAEDKVPDAEDKVPDAENNVTDAEDKNKVPDAEDKVSDAEDKVRDAEEKVPEAEDKVPEAEDKVSDAEDKVPGAEDKGKVTDARDKVSDAKDKVPDAEDKVPEAEDKVPEAEAKVPEAEDKVPEAEDKVPEAEDKVPEAEDKVPDAEDKVFDAERKVPGAEDKVPDAEDNVPDAEVTRFLQDQGPYKVPDGENKVPDAEDKDSDAEDKVPDAEDKVPEAEDKVPEAEDKVPEAEDKVPDAEDKVPDAEDKVSDGEDKVPHAEDKVSDAEDKVSHAEDKVPDAGDKVPEAEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LWH1</accession>
    <name>A0A6S7LWH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010372</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020048345">
        <property type="protein sequence ID" value="CAB4046249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LWH1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017868">
        <property type="entry name" value="Filamin/ABP280_repeat-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00630">
        <property type="entry name" value="Filamin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50194">
        <property type="entry name" value="FILAMIN_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12130" checksum="8E5E228C475E9B73" modified="2020-12-02" version="1" fragment="single">EEPVPIKKTSDDNLYVPFIPHEEGPHEINVRKDGKPVPDSPYIVDVLPKVEEQPVEEVYPMSRPCDVGMDIPSVNLPDDFKKLTGTLERPGSKKEEPVTLELNPDNTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9K6</accession>
    <name>A0A7D9D9K6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Potassium voltage-gated channel subfamily C member 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A007702</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000270">
        <property type="protein sequence ID" value="CAB3980221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9K6"/>
    <dbReference type="OrthoDB" id="415460at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005251">
        <property type="term" value="F:delayed rectifier potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001508">
        <property type="term" value="P:action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.710.10:FF:000002">
        <property type="entry name" value="Potassium voltage-gated channel subfamily C member 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003974">
        <property type="entry name" value="K_chnl_volt-dep_Kv3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537:SF252">
        <property type="entry name" value="POTASSIUM VOLTAGE-GATED CHANNEL PROTEIN SHAW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="VOLTAGE-GATED POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01498">
        <property type="entry name" value="SHAWCHANNEL"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0407">Ion channel</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="134"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3980221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22989" checksum="F04507BB086EA4F1" modified="2020-12-02" version="1">MSAFMDVLDTDQDVRVILNVGGTKHETFLNTLENFPDTRLAWISEQLRKNPDRDREFFFDRHPGIFAHILNYFRTGKLHVPRDICGPMFHEELVFWGIDPKQIEHCCWAYYDEHNELEKTWGELMSKVPAESLSDQEDSDVCSDGEMASSENEGGWNHAVKKKWRGFRKRMWRVLEDPYSSKIAWVSRFNKLNSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAA5</accession>
    <name>A0A7D9DAA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046499</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000322">
        <property type="protein sequence ID" value="CAB3980777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAA5"/>
    <dbReference type="OrthoDB" id="5978526at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="609"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="609" mass="69400" checksum="D54DA5C21B97D03D" modified="2020-12-02" version="1" fragment="single">LFFSRFLRKLFGNSSFGRERASLGAPTVHVFHIFIALYTTHTVFLGLGHSVIQFSLNRIIGHQESSFPFFYIFDANFNSILKKLSQFTPFYANCKLPKSVVSLDTYIGPLESMVDNLTGRVCENRSVMSLLSMLKHNAIVVVNCALRVEHTKTRHSQEFTRSLELTNCYRLCFENVVFNLSLNIMRLFGTTSPIANIGGGVSPLVTRSFPLLTPRQHYTVPFQVQAEFSQTVCMRGRLYTQQIRGVCLVLFEEGVLTEEQFILLYLAYDSRNPEFPYSNYSPFCLYKMNEAEYLAEFRVQKHDLIFLQQVLQIPDIIKCPQRTICSGLEGLCILLNRLAYPCRYSDMIQIFGRSVPELCMISNLVTDLIYDNQGHRVIQWNPYVLSPKNLKIYAEAVHEKGAPLENCFGFIDGTVRPICRPEQHQQVVYNGHKRVHSLKFQCVALPNGIIAHIFGPVGKPHALKAPPVLMKHLVHQVIKRIACFKVHTLLSSVKHLKSLKQIFVGRDPEELTMAALKNDNLHDAINEILDSALDENASSDNSSTDDLHQEDFPIASAENSILALSSYQQQMVETTTQVIHIDRQLPNFLRDVIKIYKRPGFNLKPTARY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH77</accession>
    <name>A0A7D9DH77_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7</fullName>
            <ecNumber evidence="11">1.14.11.63</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A039044</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.14.11.63" evidence="11"/>
    <dbReference type="EMBL" id="CACRXK020000835">
        <property type="protein sequence ID" value="CAB3985158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH77"/>
    <dbReference type="OrthoDB" id="415358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106155">
        <property type="term" value="F:peptidyl-lysine 3-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.10:FF:000059">
        <property type="entry name" value="jmjC domain-containing protein 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041667">
        <property type="entry name" value="Cupin_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003347">
        <property type="entry name" value="JmjC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12461:SF99">
        <property type="entry name" value="BIFUNCTIONAL PEPTIDASE AND (3S)-LYSYL HYDROXYLASE JMJD7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12461">
        <property type="entry name" value="HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13621">
        <property type="entry name" value="Cupin_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00558">
        <property type="entry name" value="JmjC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51184">
        <property type="entry name" value="JMJC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="JmjC" evidence="13">
        <location>
            <begin position="136"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00066577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00071397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3985158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="37587" checksum="F0D547C2BB8CA10B" modified="2020-12-02" version="1">MAQVKESISSIRDERLSSAFNSLTCEARELYLPEKICEYRGPPTPLEFYRNWVCPNIPVIFKNSINHWPALQKWTPSYLREMLGAKEISVAVTPNGLADAVCENKFILAEDRKMLFSDFLDIMESPKLGEPGIFYVQEQNGNFTGEFPEIISDAETDIKWATEAFGKDPDAVNFWMGDCRAITSLHKDHYENLYCVISGQKTFTLYPPTDMPYIPHQEYMVARYHQNESNKFEIINDPMATGHPSETIPWIPVDPLNPDYETYPEFAKVKSVSCTVKKGDVLYLPSLWFHHVQQTQATIAINFWYDMEYNIKYNYFKFLEKLCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DHE3</accession>
    <name>A0A7D9DHE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">KAT8 regulatory NSL complex subunit 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000792">
        <property type="protein sequence ID" value="CAB3984835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5987395at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044545">
        <property type="term" value="C:NSL complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026555">
        <property type="entry name" value="NSL3/Tex30"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13136:SF16">
        <property type="entry name" value="KAT8 REGULATORY NSL COMPLEX SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13136">
        <property type="entry name" value="TESTIS DEVELOPMENT PROTEIN PRTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="506"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="749"/>
            <end position="801"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="836"/>
            <end position="917"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="998"/>
            <end position="1060"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1078"/>
            <end position="1103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1186"/>
            <end position="1288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="511"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="548"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="751"/>
            <end position="801"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="841"/>
            <end position="851"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="860"/>
            <end position="917"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="998"/>
            <end position="1034"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1035"/>
            <end position="1053"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1186"/>
            <end position="1253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1254"/>
            <end position="1273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1274"/>
            <end position="1283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1340" mass="141082" checksum="ABCF34F1931C6D13" modified="2020-12-02" version="1">MAAASSLSSMGEEYVLPSTNSSKPYQYLVEIIGLDHNYCRPWSERERIPHARPAKDLFSPQTENETEPSKNADDNKKNKKDELIDVDTVEEAPLHGPGAINMQYDVMKSKIVMSECEKYVSSASSKRTPDTWEELICRTGWTTQQNVLFDKILKIVSAYRLAWLTYQGSANEPILRRVAVDKATKRVRQILSRIEWDTKLTTWLHSSMVDGLSIPLLACYLDIVQTLRSKVPTLVDKMITGGSTNRRVSAGTTDNLTALLKRPWDATVALTSFQRPRKITGTPLLLIVPGGPTTSATGNSTKRSRFWHHHLSHFGKVIPVTMHLSNSARGVSVGQCLDHMIGAVQAKVLELKNHFPNRPVVLIGWATGALVSLQVSLKESVCAVVCLGFPLLGVEGIRGGAGDPLLDSKTPTMFVFGSLSTSCSLPDIEEFRTRLLADTSLLVIGGADDKLRLTSAKKKKEGVTQSVVDRRIMDDIGEFLNKAVSSMNDDSHPRLDYFDFDDVENRRKKPKTEYRKRPAGDRTGSATAPKKPRGRTPKATNGEGNVAKKPKTVKTAKKPPVNKPAVLVPGTGQTGQAPGAPAVRPTGSIPIAPLRGTHPTIPSGILQGVPLTSVSVPISAVGVPLTGMPVSRVSIPGVRLSGVNIPVSAVNVPVSAVIKQGSLGGRSFVFPGAVSGSANPGVTTSGITTMGTSGNTHHLKIVVNPSADGGIQLTGPSKSGLSSESHATLQYKTAIVTAPLPNKTSASLKATTANTTSQTSTISTTTNSSLLSSLPITSSPRTSSTTSSTTVNVSQASTTSSKPIVVSRTVVTVPKSAVIGGQTQFVVHQGQLSAVGKQASMRPSSHGNPPTQHKVAPQGTRVNTFSSAKPQTTLSSTASKQTTLSSTASKQTTVRVSHAGSLQSSTNLARKSPSTQSMARTIQVGVKRTVSYNPSTASKNVTVVSRSLPAEALTSHASNVSHINLERLKAKLKTIQNLTGLQTGSQIGAVQMKASQTLTNPASTSVQHIKSRNTAQSSTRTIDGTGAQTTSKLITQAGSQSSTQSSASTSGQGNSRSGAQAIPMTTTQTTTKLNTQTVASAAASTTPKSSSQTVQSSTQASLSSVRPAVAVIEKSTAQASPKASTQLVQTTAPTAGKPVEQSIKHIAPLVTGKPSVMSIGKSNPQSTTKPTTHFIQVPASAKSSALNAAKASAQTSSSQTSSAQTSSAHNAQSTVQVGTQSTPSSSTTPRATSTVSHATSLTSHATSTTTTISQKEEPIGELADKSADVHADQSESSFTSGSKSNEEKLAEKINDIVNEVVGGKLRTTRQSVRRLVAAAKLAEEQHKRGEIGDGSKDQNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLE7</accession>
    <name>A0A7D9DLE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001271">
        <property type="protein sequence ID" value="CAB3988049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DLE7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="15074" checksum="54E06BC64962BA1B" modified="2020-12-02" version="1">MPKESNQSKSDSRALPRLDPYNKSPQEREENLERSSRHSSGEKARSRPSQSASHSEIRSRSRSPSEPPQWARELLKNQEKYRKEIKRLQSEIERGRTSMSTQDERVLEPVFKYVGNKKQYELNNSVADN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DST6</accession>
    <name>A0A7D9DST6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A068981</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002206">
        <property type="protein sequence ID" value="CAB3993190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DST6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="57"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="97"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="10"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="66"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3993190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16231" checksum="8DFC1BE023B50D31" modified="2020-12-02" version="1">MAELVVQAKSLEIQQRLEQEKLRIQQEKAKSAAKEKALAALQILQSTTMSTNLFDVRQSPAVVKSPPRHQTPRPHSTGRKLPQLPLISKANKCATVEKPVKQQDSFKRHDQPEREMLSQNNTTLETMLRLQEQQNDLNLQEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E6R1</accession>
    <name>A0A7D9E6R1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcium-responsive transcription factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005761</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004510">
        <property type="protein sequence ID" value="CAB4003007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E6R1"/>
    <dbReference type="OrthoDB" id="2668416at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029309">
        <property type="entry name" value="CaRF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14694">
        <property type="entry name" value="CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14694:SF1">
        <property type="entry name" value="CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15299">
        <property type="entry name" value="ALS2CR8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="474"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="812"/>
            <end position="846"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="487"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="832"/>
            <end position="846"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="846" mass="92649" checksum="C036973E79113599" modified="2020-12-02" version="1">MIEGEYTETHSNSAIVDENSSQMEAKNSILAETNIETESTSQLEVNTSTVLIEDSIEIQSKTSPNQTGEICENPTELNTTVLSTKELVYSANTSTILSLSESDALNSDDGPIVPAISAMSANNVKFETQSVSSTTDSGLLEGFINTSQKDELSVENIENTVLDRENRDQIDDRGTENIDDNLMVTESEDITQEDLGDLPLWAAQLKGCERIGDSYRGYVHTETELDVLLSMHKENTHSSWGTRQSPSSQKPSVRFMWKSQYVPYDGVPFLNSGRRATVMECQYGPRRKGNKVKVEYNENGKPVKRAHRPTCPARIYIKRVRKFPEYKVDKSYEGTPGLRLAQERALTALRVACLDSRGEERFYIQFPLETAHEYHHEDDEMIPHQALSLLPTQVNLGSSRLDPRVVEKINELVARGVTDIYQVKHGVISFIEKDLFLGVDEPTPARHNKSFFPTITDLQNHIYQAMLALESGTLESLPPPESPLKSFSKDERSSKRKCTEPRRVRAPKTPYRTICIRTDDPLYLARDSSLQDTQGQVYVVVPSASGLFPNSESLINTPLDGNKTTSLVQVLTVPASSGSAFLGQQVDGTLDLTGQFLALPMVNCESQEQISTSQDSGIVVHHDSLGKEPISVIPAPVENALNKHHTIDSETPNEDVPTTVTMPSTISPIAIQRLPSTITMATSHPGMTTSTNPNIGVAVPSKNYKNFPTAAVLNTNSTTMPDLVMTSSAVPIASTELIIPNKSLDLEVTATSEIVTSSEIALTSSNLTASITSSDTSMTSDGPIGMTPSQDFPMSYDPTTSSTILMTSPDEEMALKTEKSSSKTIANIDGDFTNTPLSPANSQPNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBW2</accession>
    <name>A0A7D9EBW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028931</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005224">
        <property type="protein sequence ID" value="CAB4005520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBW2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="13172" checksum="A3BC4695D2777369" modified="2020-12-02" version="1">MVIMVIGYDGGDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSYDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDGNSDDDDGRGDGGGNVDIPMKISW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ED84</accession>
    <name>A0A7D9ED84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028976</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005845">
        <property type="protein sequence ID" value="CAB4007602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ED84"/>
    <dbReference type="OrthoDB" id="5986337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="517" mass="58366" checksum="A8F9859C25CE3CED" modified="2020-12-02" version="1">MSAIAANISGICAKDLISGEAKYHSSCYKAFVHIMYETDEAVNNPTEAMGNNNGEVYEAVYSFCEALISNPRVVEFKEVRNVLSDEEDKLGVVVTQSQYKNLLRLISNKFEQLVFLNYQQNKVLMYLSTLKLETVVVENFELKSDVANQTSLDENSKTVINAAKILNEKIKYHPRAMAWPPEEKDLGIDKVADCVPELLDTFCTILLSGQLLDRDKSRSDRIVRLKNSLAQDIVYSVSNGAIKTPKSVLFPSVVKALCNNTEVVKLISRCGHGIGYNLVEEIETEFALKAINEQTLNRVLIPDECKQFNNLPVALMVADNIDNLECTMSGAGTSHRVNSILVMKRQPQETFEENLEGDGEQYHPPVKRKCKRSLSADVITREIQDYYGGRRVGPGVLSHIQHLGITSSYEKMSRKLHIHYLVWIELRKLKTHPLLLVRSWTGFFIKIRDKVAVIQSTMGYLDTLDSPATDLKKAYEVLCRGREIKNKLQLNAVACVFDQAFYAKCFGSRKNNLKVHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EFJ0</accession>
    <name>A0A7D9EFJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">E3 ubiquitin- ligase PDZRN3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A026840</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005392">
        <property type="protein sequence ID" value="CAB4006033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EFJ0"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051746">
        <property type="entry name" value="Kelch_domain_containing_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013010">
        <property type="entry name" value="Znf_SIAH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51081">
        <property type="entry name" value="ZF_SIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="7" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="218"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="228"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4006033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="536" mass="60517" checksum="9DBEAD30997423FF" modified="2020-12-02" version="1">MASCVGGYPQERFQYPVDKNFFCPICTDVLKDPVQCHNQHYFCKACITKHLENSKTCPICVEKLTEENLNKPPRIVTDYLDGLIINCDYSERGCTEFLELGNLANHTPMCGYRPVTCPNKRCETTVNMKDLEQHRIEHCEYRLIWCQECDEEMSVKKYGKHTCILSKEIDEMKAMLLEVKDEVTKICKNQNEKLNEIQHALDSKMDELLKEIHLLSSKKGSGKDQGLSPPQAQATSSSSAETDKNIMILGGNNKISLSSVEMYSTSKKTWINLAPTQESRVSSTAHYYEGKVFVTGGHCNGSPVGSIEYMNIRQGQWLPFARRLPVKCHGHNSVIHNDRLWVIGGMLVKQPCSDSIHEMMLNPPYTSKLKCKLQEPLAYHGSEVVGSNILILGGSTTGYHQDAVSHVSLYSTVQNRIRKVQALPFPVMDMTTVKHGDEVIIIGGRNQKNEILNLALAYNYKKSKCRQLPNMKHKRAECAAVISGNKVYVMGGFNWESRYLNSVECLDLANLLWEDLPPMNEAKDKINAVSIPKFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWH4</accession>
    <name>A0A7D9EWH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023003</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010726">
        <property type="protein sequence ID" value="CAB4019989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWH4"/>
    <dbReference type="OrthoDB" id="6155487at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="40655" checksum="3C3846EFDD04A756" modified="2020-12-02" version="1">MEELKEVVKNLPNGKAPGLDGVCYEHVKIGGGTLLSNMLSLFNMIITEEKIPASFKIAIKIPIPKSHNAKNSGFDDHRGISLLPAFDKILQRIILNRIQSLPPTQIHSLQGAYQKEQDALTTAFMIDESIKSCCDEGDCVYACFVDIRKAFDKMWIDAMLYKLFHKAGIKGKCWRIIRSWYSNMSELVHINGAYSRIYNLRQGTRQGGILSPWLFLVYINDLIYELENTGWSLFLYNKHFGSPMFADDLTLLSRVKKSLDRLLCCLHNYAIKWRIELNINKTVIMVFGEKIISSIGSERTWLLGDSPLRESDTWKNLGKLWHADPDFTEVVRATMNKGFDVISKLSKLGCKAGGLNPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8C6</accession>
    <name>A0A7D9H8C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085648</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000090">
        <property type="protein sequence ID" value="CAB3978124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8C6"/>
    <dbReference type="OrthoDB" id="10644965at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="18065" checksum="AF461AC854E7ECEE" modified="2020-12-02" version="1">MSMWHSVEKSFVERLPPDIDGLVAYRLAFNPKQSSKDGRPWGTWGTSKRKGFGGKRAVHCNGGYKCENIKCLFLMLYNNNNRLQFEADEDRTKSVCSCCGVPATRVDCNAKKNCEFDEGEEYVTVYHLGDHNCEAKKTVELNKESLKQKFDSNSKTPPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HH77</accession>
    <name>A0A7D9HH77_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000497">
        <property type="protein sequence ID" value="CAB3982422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HH77"/>
    <dbReference type="OrthoDB" id="5985585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="15590" checksum="B4AA07AC91F674FA" modified="2020-12-02" version="1">MMTDYHGKTKEWINLFISLRDKMNGYKKANITPYMHIMVYHIPKFFELYKTVKVFTGQGVERNNDVARNIVLHKSNKFDSTGDILKLESRQWELKNQERSKRTYEKRNDHYWEHELHLARKDKSRKLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HP50</accession>
    <name>A0A7D9HP50_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053701</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001573">
        <property type="protein sequence ID" value="CAB3989937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HP50"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="17304" checksum="58A0482E7DB3CA72" modified="2020-12-02" version="1">MRFQPRVMFNYGREFDGSTIDAPIICARGLCKKITAYVSLDASYNTPGDHTMILRYFHYGCEEILRGKYGVYMTVSLKQEKIHTNIVNKNSLHKKMCEDIEIIVSGMLAYDIVKNTDDIQLIWLEEYGLAVDEDLLYEFDAVVKQFYSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQZ3</accession>
    <name>A0A7D9HQZ3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Helitron helicase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001356">
        <property type="protein sequence ID" value="CAB3988638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQZ3"/>
    <dbReference type="OrthoDB" id="5978628at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="377"/>
            <end position="504"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="845" mass="97783" checksum="8740D42ECD349FBA" modified="2020-12-02" version="1">MADIDDQSRKNNPSYFSLLPFQHVYNLDEQNHRYTTAGLSSELPSRNTLDHLPSLFYIDVFKMNTSFNNDFKPDQNLYNIAKHDCRYFSPHSFDLQVAKITNKKTTLSFLHNKVRSLKKNLENLQNHLLSEFNFQSLSLNVRPNKVAEAAKWLINNGNLYKDEGITFNDTWLEDNSNSQLVFDHSDSDQTSEVSENVVDCNTESLNCDTECKTQQTSACDDDEHWSEDEAEIPAGITDTMLTSPDFVTDNERQHILNVAPGVGNRPMSIFRDKYSEELAYPGIFLGQKRPDNTNRLTKVHYSEICKSELRRCDRRAAMCVENIFFKTKKLQMKILLGQSQVALRKCQRNSNTITAGQLKQPGALDNMIHHDQGFKFLRAVRGSPPYFEKAKKDIFAMIRQLGSVSLFCSFSSAETQWTHLLRILGKLFDNKTYTDTELENLNWEEKSRLIQSDPVTCARHFDYQVHKCLQNFLLSSTVPLGKIADWFYRVEYEQRGSPHIHMLIWLENAPTFGEDSDYDVVSFIDKIVICEKPTENPDLLALVNRQVHRHSHTCRKKSKSVCRFNYPQPPMRSTKILYPLDIEMDDNEVDQHKDTWKFINKHLNDMKEGEDITFDQLLVNLKLTEENYLLAVQSCLKSPTIFLKRKPNELRINNYNAAYLSAWRANMDIQFVLDVYACAIYIVSYISKAQKGMSELLRTACEEAKRGNSSIKQQVRDIGNKFLNNVEISAQEAVYIVLQLPMRKSSRQVVFINTSPPEERVQLLKPLQEINDLEDDSDEIYASGLIKRYTNLSLADWAAWYDSTGKPYIRPSRQLDIDNYPLETNLSDNDDNEEEESKQKNKKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTL5</accession>
    <name>A0A7D9HTL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022090</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001678">
        <property type="protein sequence ID" value="CAB3990544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTL5"/>
    <dbReference type="OrthoDB" id="1630758at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3990544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="21342" checksum="E4F0C82EEC87021B" modified="2020-12-02" version="1" fragment="single">MACSKYDYELGYEDNRFEIVVSQRFHCPICFLVLKDPVMCKNEHYYCSSCMKKHLENSSFCPTCLEHLSVDTLRPAPRIVNDYISELNIHCDFYPRGCLEMVQVENLKRHVASCGFSPVQCSNDGCNVLVNASDKLHHETEVCDFRNLKCHDCGQVKHEVKEMKDQIKNEMKGMKEGMKEMIDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HX66</accession>
    <name>A0A7D9HX66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002575">
        <property type="protein sequence ID" value="CAB3994976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HX66"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="55" mass="6548" checksum="5DF4E9DA45B72B85" modified="2020-12-02" version="1" fragment="single">ELCEQLVKRYLARRDLNEMKKDADTGMLHAIESSKTEIKQTLEDMKQFIKLHKKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXK1</accession>
    <name>A0A7D9HXK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">E3 ubiquitin- ligase pub2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A034663</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002731">
        <property type="protein sequence ID" value="CAB3995797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXK1"/>
    <dbReference type="OrthoDB" id="5964629at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14279">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2410.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003892">
        <property type="entry name" value="CUE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39414:SF2">
        <property type="entry name" value="FLOCCULATION PROTEIN FLO11-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39414">
        <property type="entry name" value="SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02845">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00119">
        <property type="entry name" value="HECTc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51140">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="20"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="23"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="40"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="135"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3995797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="780" mass="85723" checksum="1234FFA50D51ABF7" modified="2020-12-02" version="1">MNDNAKNLLRACAENLLNAVNRLENSQTPSRGETPSRGRTPSQGQTPSQTQTPSQGQTPSQTQTLSRGQTPSQTQTPSQGRTPSQTQTPSQGQTPSQTQTSSQGQTLSLIPTPRRTAAEEHRGLFGYRPPSARVGKTKPPPKRRMVITSTGAQISVPIRNTWSRTFMCLTKRNAVTPPSTMDKMNMALAGLEEQTITFTKSGNSDHVHQKILEAFPMLAEVGGYEILRTGERSSRQLMVISIPPGGYTVQYSKSTIASAKGYIRPLQRDIVLKPVTLTDPDQSQISMSLKVACVNCHQDIAMDTMRSHLEICGGGSSIDYDEITVTSDCEDLESDEINLEAGALSQLQTIFSNLPPEEVRQAMENADGCIEAATATLLGGSDDDLIMSISGIAPATTTSKDSAESQGCTLHALRKNVIDESVVQRFVVSREEGTEELKRDIMGYYKDKTCKLTAKPRVRFEGEEGVGSGPVREFFLCAMKLVHEGIGGTGKPILFFEGEEDHKLPTHDQSARSTGAFKAIGRIIGHSVLHGGPLLYGLSPVVKRYWAASASDGCDGYDAETILSSITLEDIPDIDLRGYISQMLESPKQLKEDLTPYVIESGLDIDLLNSDRKLIAQGLMMYQVIDKRKQELDDILKGMKEVQLHSCLACCTVDVLESIFPTHDKQFITFDEVKSVSVFEETEGHENTISFWFQYLSDLAKYESGKPTLTDMCCFWTATNILPPRSCSLQVKFDDGTGKLPYAETCFYSLTLPTMHKTYAMFKKYMDIALLHGSLGIDHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I109</accession>
    <name>A0A7D9I109_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021537</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002571">
        <property type="protein sequence ID" value="CAB3994959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I109"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="8841" checksum="1073A7ECD670A192" modified="2020-12-02" version="1">MADEFMSVSKFFSNGFALVIDLRSTQDDTTGGGRRIVNTQSGVLMEIKKRATTADVQCNIFIVSDALLNFANRDLSSIQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2A9</accession>
    <name>A0A7D9I2A9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BTB POZ domain-containing 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A053135</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002925">
        <property type="protein sequence ID" value="CAB3996686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2A9"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.710.10:FF:000228">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.820">
        <property type="entry name" value="PHR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012983">
        <property type="entry name" value="PHR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038648">
        <property type="entry name" value="PHR_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08005">
        <property type="entry name" value="PHR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3996686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="479" mass="55272" checksum="35057651BB1D1DC1" modified="2020-12-02" version="1">MADKNSETFDKNSDKNDQNVDGNKENTAMLVDEEHWQACRETIRERNRFMFKNSLMSDVHFSVGISDETAERETRNVPAHKYVLAISSPVFFAMFYGRLAETQDTVEIPDSDYECFVEFLRFLYCDEVNFTIDIVMGVNYLAKKYIVPALEKKCIAFIEEAVDASNVFKLLSYARKYKDESVEKICWEFLDSDTVEAVNSEFFCQVDKEVIRELLTRDTLHAKEIELFLAIKKWAETQNLEGNDEASNDELTKESVNEVVNLIRYPLMSQREFAEHVAKSRLLRHEDVINMFLKFNDTLEDNTVLPFSQVPRRGYYRCSLWEHVYDTLDIETWDVDTSRMPNSLTFSSNCNILLCGVGLYGSDNNNDSYMFEVYVTDEDDTVLLQSEGSFSCHSQCFAYDVIFNKPVKVHKNVWYTIMATVDGPRGVYGGQSVAKATGLDLTTDEISCGPVRFLFRDLNVGGRIPNIYNHYSGLLYFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IA09</accession>
    <name>A0A7D9IA09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Deleted in malignant brain tumors 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A002442</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003891">
        <property type="protein sequence ID" value="CAB4000669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IA09"/>
    <dbReference type="OrthoDB" id="6020543at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00112">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.400.10:FF:000034">
        <property type="entry name" value="Low-density lipoprotein receptor-related protein 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.250.10:FF:000011">
        <property type="entry name" value="Scavenger receptor class A member 5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.400.10">
        <property type="entry name" value="Low-density Lipoprotein Receptor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036055">
        <property type="entry name" value="LDL_receptor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023415">
        <property type="entry name" value="LDLR_class-A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002172">
        <property type="entry name" value="LDrepeatLR_classA_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19331:SF465">
        <property type="entry name" value="EGG PEPTIDE SPERACT RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19331">
        <property type="entry name" value="SCAVENGER RECEPTOR DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00057">
        <property type="entry name" value="Ldl_recept_a"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00530">
        <property type="entry name" value="SRCR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00261">
        <property type="entry name" value="LDLRECEPTOR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00192">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00202">
        <property type="entry name" value="SR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57424">
        <property type="entry name" value="LDL receptor-like module"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01209">
        <property type="entry name" value="LDLRA_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50068">
        <property type="entry name" value="LDLRA_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00420">
        <property type="entry name" value="SRCR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0720">Serine protease</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="104"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="160"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="179"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="225"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="238"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="269"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="360"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="367"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="379"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="468"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="504"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4000669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="504" mass="55924" checksum="721FABB5DC027F58" modified="2020-12-02" version="1" fragment="single">IVTVTGSSDAEMVNVLFDPLFVIVDIIVMMVVTKITVLRQTYELLVVLTMKDGQLGFQDAEAAYQGRNVPDETGQIWLDDVYCRGRNMTTPRPALQPTTASRHCQSWQFRCRNGQCIHRSWTCDGVSNCADRSDEDWVVCGRNTTTPSPTWQPTNASRHCESWQFRCTNGQCIDRSWECDGAYNCADRSDESLCNSAVLEVRLVGGSHNEGRVEVYYKGQWGTVCDDNWDIRDARVVCRQLGFQDAEAAYQGRNVPDGTGRIWLDDVYCRGHESALFSCRHSGWETHNCGHSEDAGVRCNVTGGRNMTTPGPTSQPTTTSRLCDGGCDCTDGSDEDWVVCGRNMTTPWPTSQPTNASRHCESWQFRCTNGQCIDGSWLCNGGYDCGDGSDESYCNSTDVRLVGGSHNAGRVEVYYNGTWGTVCDDNWDINDARVVCRQLGFQDALAAYQGHDNVLDGSGRIWLDDVQCGGHESALFSCRHSRWGNHNCRHSEDAGVRCGNTGNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBX1</accession>
    <name>A0A7D9IBX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033048</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005323">
        <property type="protein sequence ID" value="CAB4005824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBX1"/>
    <dbReference type="OrthoDB" id="5985632at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="208" mass="24109" checksum="CE320B1AB6F1CB28" modified="2020-12-02" version="1">MAVNLVINLNAALTIPLIHIHCWLDSTVALYRIKGKGDHRQFVMNLVQKIRQHGEVTWHHVPTRENPADLGSRGDDVKDNQLWKEGPAWLNDPSRWPQDVTLVPDEQTRAEEKVKVKNEIAAATVIKSDVFDELLEKYHLPKVLRILGYVRHFVSNCKRQTEEKVTGPISTDEVEQQELWWIRQAQQAVQDDAQFRTDQLRLNLLQND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IEW7</accession>
    <name>A0A7D9IEW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein F54H12.2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006221">
        <property type="protein sequence ID" value="CAB4008763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IEW7"/>
    <dbReference type="OrthoDB" id="5955637at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009263">
        <property type="term" value="P:deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000358">
        <property type="entry name" value="RNR_small_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409:SF21">
        <property type="entry name" value="CAPSID PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409">
        <property type="entry name" value="RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="38758" checksum="695D6CBCFADE85F4" modified="2020-12-02" version="1">MALETMHKDSCMCSKSELDLFSIPPTQVVMEKGFWEDVDPITSISSSDTIEFLCAANSAVYTDLASSYLYVKTKISTATGGNVGADIQVGPSNLWMHALFSQVEVFLNNKLVTPSSTAYPYRAYIETILNFSKDAKDSHFTSALFYKDKAGKMDAVNPLAQDANVNTGLKQRHAYTHESKSVAMEGRIHSDLFAQDRYILGAVPIKIKLVRSRNPFCLVSSAENTNFKVVIEECLFRVRRVNVAPSIILAHSQSPQQTTAKYPINRIDCKVVSVPRGNMSGNQPNIFQGGLPNRIVIGMVDADAFNGTYTKNPFSFKNYDITTMGLTVNGANLPGKPLQLKFGADSKYISAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGV4</accession>
    <name>A0A7D9IGV4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="5">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">DNA 3'-5' helicase Q1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A053556</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020005548">
        <property type="protein sequence ID" value="CAB4006584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IGV4"/>
    <dbReference type="OrthoDB" id="2499463at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF105">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE Q1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="7">
        <location>
            <begin position="106"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00044566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4006584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="304" mass="34831" checksum="E80BC921C6C68412" modified="2020-12-02" version="1">MSDQIYRLSELTGIQASIIDVKELKREDKDSSDENMDDDNCFNVDIDFRLCEKRKLRDGRYHIVFAPPETLISSKYGRELLLSQQYQENVVGIVIDEAHCILDWSLLQEKVDYPLTIIYTSLTICGFAYKLFEHILGDEQYFPLGSDSIPSNRLFAQFHAPQTRQMKEEILKQLCSKEGIVRVVFATVAIGMGVDIRDIRQIIHIGPPSSVKAYFQETGRAGRDGKPSTALLYYNNRDIAKNRVGMQDDMRAYCASNNTCLRKLLLKSLDYKQDIVFKPLHLCCGVCEKDCDCPMCLQLLMEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJT0</accession>
    <name>A0A7D9IJT0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009846</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005801">
        <property type="protein sequence ID" value="CAB4007449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJT0"/>
    <dbReference type="OrthoDB" id="6779904at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15771" checksum="B79078350122B7C6" modified="2020-12-02" version="1">MIFIRDGIPYSSRTDLMSKVCESSCIEDVRPKCKTLLVWTVYRAPDVNLDIFIEDLSHSLHTSEDVHTILLGDFNVDMQTLGKVTNKEQRRKLSKLLSIHNFEQFIADPTRVTETSSTLIDLLSTVVFFHWTLAIIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9INT5</accession>
    <name>A0A7D9INT5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033249</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008006">
        <property type="protein sequence ID" value="CAB4013751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9INT5"/>
    <dbReference type="OrthoDB" id="6009855at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="51" mass="6043" checksum="1624274910A1E2F2" modified="2020-12-02" version="1" fragment="single">MDRVPRPEQDSLPCCHYKPVFDSSNKQRSGETRYPDDFQPRKNLKVEFAND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IS26</accession>
    <name>A0A7D9IS26_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009660</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007348">
        <property type="protein sequence ID" value="CAB4012024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IS26"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="530" mass="60129" checksum="60B50052CBA831AE" modified="2020-12-02" version="1">MNLTQLIKSPTRITDATQSLLDVILVSSKSIVYRSGVLLTSISDHLLVYAELKIKSPKQPSQYITARSFKNYVPNYFAADLADKSDCLLSIFDGDDVNAKLNIFNHAIQSTLDVHAPIKTIKIRNRPCPFITQDLRNLMKERDRLHQRFLRTRDIIDWVNYKSYRKNVKRDLKKAENEYNSNEVRQHKDNPGSLWKIVNRLIPSKGKERQIYKGDHKSLANDFNQFFSSVGENAARASSHLADTNNINLRESIESVVITEIDQFKFRAVTCHEVRRVVLSLPLNKSSGPDKINPRIIKDCLPVILGPLTEIINCSLRTSTFPLAWKKAELIPIHKEGDHEVPSNNRPVSLLVVASKICERLALEQFSWYLTSNNRLSSHQSGNKKLHSTETLNVFITDTILKAMDKKKLSALVLLDLSKAFDSINHQRLLHKLSNVGASKSTVNWFRSYLTDRFQSPRINSTLSDPLPITYGVPQGAILSPLLFCIYLNDLPCASYNGDLESYVDDTKTLLSFPLTEADTGIKNLELRPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IXG9</accession>
    <name>A0A7D9IXG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107340436</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045748</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008804">
        <property type="protein sequence ID" value="CAB4015682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IXG9"/>
    <dbReference type="OrthoDB" id="10066679at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4020.10">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003309">
        <property type="entry name" value="SCAN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038269">
        <property type="entry name" value="SCAN_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888:SF1">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888">
        <property type="entry name" value="ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02023">
        <property type="entry name" value="SCAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47353">
        <property type="entry name" value="Retrovirus capsid dimerization domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50804">
        <property type="entry name" value="SCAN_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="655" mass="73974" checksum="13C4A4118EA2220B" modified="2020-12-02" version="1">MEKWIELGKEFGLKEKELLDFVKDQQEIERRKVDDDRQERQRERDVKKLEAREKEAMRRHELEMKQLEVQAVNTNGSVSEHHPGISTAKMPKLPQFIDGQDDLDSYLQRFERFAKGNKWNESIWATSLSALLTGKALDVYSRMSETAAVDYKELKEALLKRYNLTENGFRVRFRNSKPEEGESPEQFITRLKRYLTRWIDLAKTEKSFEALCELFVKEQLIDACPEDLAIYLRERDPENLDEAAKVAEQFLIAHGKKLHSPSKPPKGKYPPSGSTGNEKGGKSGGRMQCFTCGGYGDKAIECSKNPNKSPPKVEKRCFLCDRTGHLAREFKVMRDKKNTEKAGAALHDQGHPPENDTNLESCIHGDQLLLRNGKTLPFIKSGSVSLVDSTARKMPVVRGRVGEKIVDTLRDTGCSGVVVRRSLVADEQLTGRVGYMLLIDNTLREVPLAEITVDTPYLRGQVEAQCLPETIYDLIIGNVPGARAPDDPDPTWQEASAVTTRAQAKKSSTLKPLRIPEELRGSAVDRNDLSRLQKEDPSLEKYRSQTDPKKIHDGEVSFEEKNGILFRVFKIFDANGEQTTRQVVVPQPLRQQVMNVAHSSILGGHLGVKKTTDKITGNFYWPGIHGDITRFCQSCDICQRTVAKGNVSKTHRLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZ12</accession>
    <name>A0A7D9IZ12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021692</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009916">
        <property type="protein sequence ID" value="CAB4018237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZ12"/>
    <dbReference type="OrthoDB" id="5804956at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="133"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23408" checksum="B38AC06F79A60626" modified="2020-12-02" version="1">MENHKTGLPDRIKLVNSKEIMKCRKIKAVIRNHTPNKRKESEKYFHHLLMLYFPWRNEQELFGEDQTYIPKFYEPDVQEVVQRNKEIFEPDADAINEALESLGNFDGVPTHSYDPINDQENEDLRQTLPDDFDETESFNESLPQHLASNPESVQPSSGISCYNQPLEISDDDLRKTVRSLNNKQRYAYDVVLSWCRNKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J318</accession>
    <name>A0A7D9J318_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A050636</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011080">
        <property type="protein sequence ID" value="CAB4020696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J318"/>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF31">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 6-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="994"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="143"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="487"/>
            <end position="897"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="907"/>
            <end position="994"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4020696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1090" mass="125154" checksum="090788777D677A9C" modified="2020-12-02" version="1">MVPHSEDKVSHTGDKVTQSEDKVPHSEDKIPHSDDKVPHSEDKVPHYEDKVPHSEDKVPHSEGKVLHTEDKFPHSNDKGCHTEDKVPHSWDKVPQTEEKVPHSEDKVHHSEDKVPHSENKVSHSEDKVPRSGKKVFHTVDNVPHSENKDPHSEDQVFHTEDKVPHTEDKDKVPHSETKFPHTYDKVPHSENKVPHSEDKAPHSEDKVPHSEDKVSPTEDKVPHSEDKVPHSEDKVPHSEDKVPHSEDKVPHYGDKVRHTDEKVPHFDDNVPHTEEKVPNSEDTVSHSEDNGCHTEDKVPHSWDKVPQTEDKVPHSEDKVHHSGDKVPNAEEQVPHHEDKVPHPVDKVPHCEEKLPHSEDKDKVPHSEDKVPHSEHKVPHAVDKAPQSEDKLLRTEDKVPQSENKVPRTEDKIPHSEDKVPHSEDKVLHTEDKVAHTEDKVPHSENKVPHSEDKVPHCDDKVPDCEDKALHTEDKVPHTEYKVAGSEEVLHTEDEVLHPENKKVPHSEDKVSHSEDKGPHSEEKVPHSENKVPHSEDKVYHCENKVPNSEDKVPHAEDKVPNSEDKVSLTEDKDKVPHPEEKVLHTEDKVPHTEDKVPHFENKVPHTEGKVPHSENKFPQSEDKVPHYEDKGPHTEDKVPHSEDKVLHTEGKVTHTEDKVPHSENKVPHSEDKVPRSEKKVFHTEDNVPHSEDKVPHAEDKLPHSEDKAPHSEDKVPHSEDKVLHTEGKVTHTEDKVPHSENKVPHSEDKVPRSEKKVFHTEDNVPHSEDKLPHSEDKAPHSEDKVPHFEDKVLHTEGKVPHSENKVPQSEKKVPHSEDKVLHTEDNVPHSENKVPHSEDKDKVPHSEDKIPHCEHKFLQTEDKVPHTVDEVPHYENKVPHTEDKVPRSEDKVPHSEGKVPQSQRKVPHAEDKVPHAQDEVPHSEDKVLHTEDKVPDTEDKVPHSENKVPHTEGKVPDSEDKVHHTEDKVPHTEDKVPHSEHKVPHNEEKVPRSEEKLLHTEDKVLHSENKVPHSEDKFRHTEARFLTLRTRFLTLRRRVLPLRRRFLTLKTRFLTLGTKLLTLRTRFLTLRTRFITLRTRFLTPKAGPSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J361</accession>
    <name>A0A7D9J361_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011723</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011188">
        <property type="protein sequence ID" value="CAB4020930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J361"/>
    <dbReference type="OrthoDB" id="10038899at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="38648" checksum="ECCEB0752C3E0176" modified="2020-12-02" version="1" fragment="single">MEGKDGLWVLTDDSRNPRREDYRDEVIDAHDELANDHQVEENTPTQLVKEIAINRNNVLKDMIIAFKDEIILSCCLEIVFIDERGNIDNGRGAGVKREALSIFWREFYNSLATGASEKVPAIRHDYQQSEWKNIARVLVAGFTKFGYFPVTLSSAFIASCLFPEELLAKEWLVESFHQYISKDESETLKRSVTDECPDPSTDEDVTDVLSSYKCRRGVRKDTMPKIIKELAHQEIIQRPKYVANAWSPIVNELKRFEEFKTVDSLVRFYEAKKPTQKKVCKLLTSNPATDAQRECFSHLKRFVKSLDDNLVSIFLQYVSGSNIIAVDSIEVAFSEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J7X7</accession>
    <name>A0A7D9J7X7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Prefoldin subunit 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A038524</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prefoldin subunit alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012805">
        <property type="protein sequence ID" value="CAB4024024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J7X7"/>
    <dbReference type="OrthoDB" id="6375174at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016272">
        <property type="term" value="C:prefoldin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015631">
        <property type="term" value="F:tubulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007017">
        <property type="term" value="P:microtubule-based process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007021">
        <property type="term" value="P:tubulin complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd23156">
        <property type="entry name" value="Prefoldin_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.370:FF:000001">
        <property type="entry name" value="Prefoldin subunit 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016655">
        <property type="entry name" value="PFD3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009053">
        <property type="entry name" value="Prefoldin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004127">
        <property type="entry name" value="Prefoldin_subunit_alpha"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12409">
        <property type="entry name" value="PREFOLDIN SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12409:SF0">
        <property type="entry name" value="PREFOLDIN SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02996">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46579">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26648" checksum="120FA5ADDA9C7889" modified="2020-12-02" version="1">MATEKAGETTSSQEIIEKKHRGIPEATFLEHVDAFMKTDGSDGAESVLRRLDEQHQKYKFMELNLMAKKQKLQGQIPDLKSTYEMVKLLKEKKEQSRILSTQFLLSDQVYVNASIPPTDKVCLWLGANVMLEYNIDEADKMLSRNLESAKKTLETVENDLGFLKDQYVTTELKNHSCGEMTKTLADMEKRMANVEKNMAKKETMETHIKNLQTSMATNAANMDTRLENVEKNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDQ9</accession>
    <name>A0A7D9JDQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ARABinose 5-phosphate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A031269</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014965">
        <property type="protein sequence ID" value="CAB4027691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JDQ9"/>
    <dbReference type="OrthoDB" id="432447at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006796">
        <property type="term" value="P:phosphate-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10490">
        <property type="entry name" value="Glucose-6-phosphate isomerase like protein, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10584:SF166">
        <property type="entry name" value="RIBOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10584">
        <property type="entry name" value="SUGAR KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SIS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Carbohydrate kinase PfkB" evidence="3">
        <location>
            <begin position="19"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4027691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="451" mass="48313" checksum="3103FB11B5A405B4" modified="2020-12-02" version="1" fragment="single">VPKVGEKGYFASPNKTHEKSIVGGVTLNHLSWASILGVPTGLLALQGDDKSGKLIRKTMKNMNVSTEFVQVSKKFTTGESFVFVQEDGERSIVMATGATSLMNEKIARHYFEKTIMNDCQMLTTEISQVPLSGVLAVLQTAKAAGITTVLDLDVSPSVAINEAQLGTIDELIECVRTADILKPAKHAAKEMLPYLASEIMVDNMVELTKVMREACGSKLIAITCGEDSSILATENHLVEVPAVRVSRVVDATGAGDAFLGGLVSGLYYNGLPSDETNLRKLGQLGNIVGGACCEVLGALPTEESRIKLDKELEELLGAKIAISRTENNDDTAERLQGFKESVKLDVECATTISGSLETAAVESFIDILENCSGRVLVSGIGKSGILAQRMSASLASTGTPSHFIHGAEWTHGDLGKYMSLTFCREVEARSNMAAAKFRAPSNYDLKMLFIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRJ5</accession>
    <name>A0A7D9JRJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000114</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020046">
        <property type="protein sequence ID" value="CAB4034355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRJ5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="183"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="23268" checksum="E89205FFACCFD6FE" modified="2020-12-02" version="1">MKEPSAESLKIQLEALVKVLNNFASIPQLCLSSKQQVCEQYVMYWATVFFNVDVLDPLDLWPPMKNLKQDEAKDLFPLIELCLTCPYGNSVLTGPNLKEFNEEFCDVAIIPLNDAKRRRPNQTKTCKGSKQTRAKEKNEYLKDWLVDVVDEASSTESEFENTDNEPNNEDHVVMLEDSEQETIYSVEDDPLDCGMRSSSEAESD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LC00</accession>
    <name>A0A7D9LC00_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016310">
        <property type="protein sequence ID" value="CAB4029643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LC00"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15598" checksum="2F42C6899C409D15" modified="2020-12-02" version="1">MLSLQDKLASNATDQNFLRSVLKFADRVKKMPKSKLTTSFHCFGAEGVYNTRLTNTSIVKKRKRGTIAVQPEAVKRRKVRNGSRRKQHKGQTAKNNPFQKVAGNAKRAHRFAENVQRNEPVAKKAGRSMATKTRIYGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LTP2</accession>
    <name>A0A7D9LTP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004300</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024820">
        <property type="protein sequence ID" value="CAB4038982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LTP2"/>
    <dbReference type="OrthoDB" id="5987471at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="375" mass="42123" checksum="9432FBAB66C56949" modified="2020-12-02" version="1" fragment="single">KAACHSFIISILGTFLFEVNGLEKLKGTFEGEKLTIHNTREKRARKTNVTKIRHNLEKLCAQKSKLNRSEIEAEIEALWDALETSLSVMDELCSTYIKSSQAEAKEAILKEQENFESDGHQTVEKAQQLNTITANVSPDPTTTQTSPPSFASNFTGITHHRLKPLTVPVYYGDKTRFEDFWALFISLVDEGSEPVNIKMARLRQSLSGNALDAIRGLGVTAPEYNEAKDILKSKFGGQRRQLQAYLDQLENMPTLKNNDIQSFEKFADLVRPADGKHSNDDTRSPVPDRWGVAKEKHLCFRCLASNHVVWLKANGRKVKVNAILDDASNETFLNEQVAGVLGLQEPYKTVKVHVLNNEIETFQSMPVENITGSYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LV62</accession>
    <name>A0A7D9LV62_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073641</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024863">
        <property type="protein sequence ID" value="CAB4039021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LV62"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="17763" checksum="C58DFA01F6C9CDAF" modified="2020-12-02" version="1">MEGRTGSKGALQIQADYFNEATEYNALIERIDSLKEARDRTLEQRVLEETREAQLEDISRLRKFVKWLGEEKVGLTGIAISTAGLLTTILIHARGAIVKTAKATGKVAKALANLAKKAGPILVPILSAVATALSWGAKGVAWLASHLWVLAVAAALMVFNYYSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LV99</accession>
    <name>A0A7D9LV99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008068</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025800">
        <property type="protein sequence ID" value="CAB4039737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LV99"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000023">
        <property type="entry name" value="Pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14909" checksum="E2DD288C503FB021" modified="2020-12-02" version="1" fragment="single">MVRVPAPKTAGEVRSFLGMANTCHEYIPDYATITAPLRELTKKNIAFKWENRHQKAFEQLKKKLTSTPVMAYFDTKKRSLVIVDCSLYGISAILAQKEHHSQQYKILSYASRALSPVETRYSQTDIEGLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVT7</accession>
    <name>A0A7D9LVT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061341</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027660">
        <property type="protein sequence ID" value="CAB4041029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVT7"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="26472" checksum="AD7F66B6B6D88EDA" modified="2020-12-02" version="1">MRKPIITTSRECKSLTEMTSELNLKQIIESPTRITDISQTLIDVILVSSNTARDSGVLNCTVSDHLPVYVTLKLKSTKPPPTHITVRSYRNYDPELFAADLASKSERLLSVFSVNDINEKLKIFDDVLQTTLDSHAPIKTLKVRDRPCPFVTPEIKELMGKRERLHGLFLKTRNHSDWCNFKAARNAVKTELIKAQRNHVYNEVMKHKNNTGSLWKIIKDNVAYKERDGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M3H0</accession>
    <name>A0A7D9M3H0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Probable G- coupled receptor CG31760</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A008324</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the G-protein coupled receptor 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030346">
        <property type="protein sequence ID" value="CAB4042546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M3H0"/>
    <dbReference type="OrthoDB" id="5969869at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017978">
        <property type="entry name" value="GPCR_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043458">
        <property type="entry name" value="GPR158/179"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32546">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTOR 158-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32546:SF26">
        <property type="entry name" value="SMOG, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00003">
        <property type="entry name" value="7tm_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="G-protein coupled receptors family 3 profile" evidence="11">
        <location>
            <begin position="4"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4042546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12504" checksum="B77EF7B2C486D2EF" modified="2020-12-02" version="1" fragment="single">MIELTDRTLLKYLSLMLVAVLCYLMIWTWTQTHESEIKMTSAGFKYKRCVREWFSNAIEIGEVLLLLWGVWLCLRVRNAPSAYNESKYIAWCIYNTVFIMILVGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FHU2</accession>
    <name>A0A6S7FHU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sperm-associated antigen 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057049</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000025">
        <property type="protein sequence ID" value="CAB3977017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FHU2"/>
    <dbReference type="OrthoDB" id="5979509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.50">
        <property type="entry name" value="R3H-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001374">
        <property type="entry name" value="R3H_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036867">
        <property type="entry name" value="R3H_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017330">
        <property type="entry name" value="SPAG7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13498">
        <property type="entry name" value="SPERM ASSOCIATED ANTIGEN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13498:SF3">
        <property type="entry name" value="SPERM-ASSOCIATED ANTIGEN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01424">
        <property type="entry name" value="R3H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037943">
        <property type="entry name" value="Sperm-assoc_antigen_PAG7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00393">
        <property type="entry name" value="R3H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82708">
        <property type="entry name" value="R3H domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51061">
        <property type="entry name" value="R3H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="161"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="194"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="217"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26517" checksum="9AF81D8DC05F2BF1" modified="2020-12-02" version="1">MDLLGSILSNMDAPPTSKVDKARQKSLKEQKEKMEKMHAAEKLKRDKFRGEVEKQVNAFMKDPNQKHFKYPPMEKIERSIIHDVAEIAGITSYSFGDEGINKHIILFKKEFAPTEEELTVLKKGEGYDPEKIKHALEEKKLKASSSQERSRSTTVQKPRTNYKEKYERLIGKESGKDSARLTVTNNTFGCVPSENKKDVRSIEETLNDIRAKKRQKTTNDDDAPKSSDDAVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQN0</accession>
    <name>A0A6S7FQN0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LicD/FKTN/FKRP nucleotidyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056157</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000026">
        <property type="protein sequence ID" value="CAB3977030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQN0"/>
    <dbReference type="OrthoDB" id="444255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009100">
        <property type="term" value="P:glycoprotein metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007074">
        <property type="entry name" value="LicD/FKTN/FKRP_NTP_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052613">
        <property type="entry name" value="LicD_transferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13627:SF32">
        <property type="entry name" value="AGAP006029-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13627">
        <property type="entry name" value="FUKUTIN RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04991">
        <property type="entry name" value="LicD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LicD/FKTN/FKRP nucleotidyltransferase" evidence="1">
        <location>
            <begin position="78"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="29664" checksum="4C27216AE84D6743" modified="2020-12-02" version="1">MFRRVLVTIFNVNNKTSFCRRLCIAAIIFICISIYTTININPDIIKCDISHEIPCYRTPEHLRRLVKFAEDVTMVMDKLNMTSFLLYGSLWGVYRFHGPLPWDHDIDLGVIGDDNFYAMKDTLVEELVNIGFYVRDDWSTSSYKVLPANQTGHLGIFIFIDYYGTMKRPGLEPWLFSLHYRIYHSFPAWMAETPLPKAKFAGYNAWVPRGGREILKHLYPFTWRDVDLPVTCEGNGTTLQDLKTFMDEKVNIDPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FS68</accession>
    <name>A0A6S7FS68_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016551</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000148">
        <property type="protein sequence ID" value="CAB3978879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FS68"/>
    <dbReference type="OrthoDB" id="5971197at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11521" checksum="4799933FB65FB07E" modified="2020-12-02" version="1" fragment="single">MGVNIEFNDQHPSQYAAKVRHFNMSETAIIGNKINKLLSKGVIIPSIHELGEFISSIFLRLKKDGSYRMILNLKSFNEFVKHRHFKMDTLDAAVKMMKPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FT46</accession>
    <name>A0A6S7FT46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001671</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000345">
        <property type="protein sequence ID" value="CAB3981017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FT46"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="304"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="216"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="312"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="347" mass="38974" checksum="63A4727BA4AC50FD" modified="2020-12-02" version="1">MATRRVMANSDIIPPLLDKSRKEIVNSSTIGIDFLGNALSNDLIYEGTRLKWCNDLDSLKAFVAEVLDLNGKWCSPGGGSKRFTSSNAELTLTWYSGKQNTLLFQGKDGNLIRDGCVKFCQTRDGVMKSSCKQVQALSKNSELQRDLIAQNILEPEPTPISRPANQVDAASQVCLDIIGDNSNYLSSCRCSCGVLAADVEEVKLYITILSNRIDSIANANTEYSHKDKEIDRLRSELSIEKARFEKLKSELSLFVKERSLEIEKLNLTIVSLENKNASTFAAPMNNNNNNNIPIQAKNNQYINGNTSNKPPFPKRHRMKPPPYRTGHRHQSLEWLSHLDFVHQLCKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUM7</accession>
    <name>A0A6S7FUM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040763</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000204">
        <property type="protein sequence ID" value="CAB3979496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUM7"/>
    <dbReference type="OrthoDB" id="5985304at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46177">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46177:SF1">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="48"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17977" checksum="432554D86EB9542F" modified="2020-12-02" version="1">MGGYRSMWHALCISGHQVPRNVVEQLMRELDPEGCQIRKARRLRRRTYQVPGPNHCWHTDGYDKLKPYGFPIHGCIDGWSRKIIWFRVARSNNNPIVPGLFYVESVAEYGCPVKLRSDCGTENGVMAALQCEFRSSSDAHFLEHPQLTRELNPGGHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2D6</accession>
    <name>A0A6S7G2D6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TLDc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087391</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001117">
        <property type="protein sequence ID" value="CAB3987084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2D6"/>
    <dbReference type="OrthoDB" id="10635320at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TLDc" evidence="1">
        <location>
            <begin position="128"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="25688" checksum="14C6BEFBCB4C306A" modified="2020-12-02" version="1">MAWAIKYMEFWRVSSKDPIRALEKVLEECMAGLIPDEQDRFTKGLSAVVLANTLALGWLTPATCFVKNRHGEKVKAVAIVKSVVDGFADISHADDSSYDLLGDYELTEHLAEVLDELELKIKEDLEGSASYKSSSNAFIFSFVNKDNLPPFKSPVKSNQHAIYSSPTYGSTFGGGHVIHIANNANANTGSYTDFGYSYQSPSGYSYSSTKARNLLASTYRFTPEEVETFYLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G405</accession>
    <name>A0A6S7G405_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030297</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001049">
        <property type="protein sequence ID" value="CAB3986648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G405"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="10700" checksum="2D2B01BD68A2F08D" modified="2020-12-02" version="1">MDEEQERPTSSEEENYGNRNEGENEGIAQQAEDSQVTRAVQSGGDGRPPIQETGDGYTQIPQPTQDGANAASDLEEELGGVIIDVLVRAVETSLVIVAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6B5</accession>
    <name>A0A6S7G6B5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070648</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000363">
        <property type="protein sequence ID" value="CAB3981210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6B5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="102"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="29359" checksum="5BCD505305DE6AEC" modified="2020-12-02" version="1">MFGRNPNSPEKDFKDKNKKANCWKKIAERLHETVDSVKRRQSSGNFKLSDKNIKKSSTSDQPPVSVNVDSSEESHDSTNSDEGSDDSIASVQTTVNQTVDESISTTKDSTTTLSTHKDSTQGKIKKQWKKTTSRKRKIEETDGQVDKSTASLNESIKLQESSMKRADKQEMDEDYMYCMSLGNRMRKLDEKNKAVVRSATEKIFLDIQFGNYNNLTMQNPMQFTTQQPLIQSSSQNLLGNYLWTASNNPFPAQNDQQFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7I4</accession>
    <name>A0A6S7G7I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001251">
        <property type="protein sequence ID" value="CAB3987918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7I4"/>
    <dbReference type="OrthoDB" id="10020599at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="91" mass="10957" checksum="D6E2647004F31819" modified="2020-12-02" version="1" fragment="single">KVFPKLWKEFYLAPIPKVEPCTNLEEIRPVALTSTISKIQESYVVDWMYDDMESTICKEQYNMVVYHARQQSLRSFTFYTNGIKHWTYHNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7L6</accession>
    <name>A0A6S7G7L6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065204</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000825">
        <property type="protein sequence ID" value="CAB3985079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7L6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7245" checksum="201F480E2E772A31" modified="2020-12-02" version="1">MDEPEEDLTELKTTRDETRSGPPKFLNEKKDGKLSKKVSTDKQLIAIVNKELSLKRKVAEKME</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G967</accession>
    <name>A0A6S7G967_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A058314</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020001300">
        <property type="protein sequence ID" value="CAB3988275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G967"/>
    <dbReference type="OrthoDB" id="5959374at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="57"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="89"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3988275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="843" mass="94969" checksum="73F8EE41C78BF31B" modified="2020-12-02" version="1">MLYFLWHNEQELFGEDQTYISKFYEADVQEVVQRNKEIFEPDGDAINEALESLRNFDGVPTHSYDPINDQENEDLRQSLPDDSDETESFNESLPQHLASNPESVQPSSGISSYNQPLEISDDDLRKTVRSLNNKQRYAYDVVLSWCRNKMANLNTLKPSKVDPIHVFVTGGGGAGKSHLIKAIYHTVTKTFRHAPMNPALPSVLLMAPTGVAAININGTTVNTALAIPRECGNNVPAMSDQRRTQMRLSLAELKLIIIDEISMVSNMGLLHIHQRLKEIFVTPNSELFAGISVLVFGDFFQLPPIRSATTFSNYKNDTFNLHHPWHVFKMAELTQIMRQKDDLAFTQLLNRVRTASHTDDDIRCIQSRTITPGDENYPSDALHIFAENAPVDEYNIDRLQQIQSPQYVLEALDQFPPHVRKQDIERVLSKGRSETGGLDTKILIKENARVMLTTNVDISDRLINGHLGTVIKVSVDNVSNKPSTIFIKFDDSNAGVSAIRNSSSSFARENNVVPIKPVLARIKVRPGKPSSPEMQRLQFPVTLAWACTVHKVQGLTLDNIVVSFDLKKQRYFNYGQVYVALSRATSLNGLHILGTLESKHIRANPKVQAEYERLRETSSLHPHITTDLCNIETVSICLLNIRSFKKHSLDLCNDPILSKCDVFALTETQLLTNVSNDDISSILNDFSIHRQDHNSDKFLSLAVCYKDTVTLCDTEYFTSINGLRFLLNNSGGNTLSCLLLYRKHGCDIQQFIACLDYIITSLDIDVIFGDFNIDYFNEKIISSLKVLAESLNYVQLVSKPTFVSSGSLLDHVYVKQSISNKMEANVVSVYYSDHEAVKVTVRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBP4</accession>
    <name>A0A6S7GBP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040276</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000950">
        <property type="protein sequence ID" value="CAB3985986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBP4"/>
    <dbReference type="OrthoDB" id="6375653at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="178"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="530"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="152"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="192"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="533"/>
            <end position="544"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="658"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="658" mass="73804" checksum="59827A43316A3893" modified="2020-12-02" version="1" fragment="single">MSDTELDPSEIPEEPKADEEVKQKLVLIELNRRKRASKRSTTKARHHLEKLIVEKAEVDIQELEHRVETLWQILEDTQVIMDEMSAYFMEQKDFESHKLVMQESNELEGDCQKVIEKTQAVIVKCASESCVPSPPIQKTAPNTGGEVETEVTDNQGVSTSVTGNEGELDIADDVTNQGPQAVAPATLGGNDHLQQPATENSSSTSTGYPSPQHDITTTSSGHGETVINRRLKPLRVPTFDGDKKKFEEFWGLFVSLVDMSNEPTSLKMARLRQSLTGIALDSIRGLGVSGPEYKEAKEILNTKFGGQRRQLRAYLDDLERMHPLRAADVQGFERFADLVRVTVVKLQAEGKVGELGDGTLYSLLVKKLTGHQLEIYTRWMNEHSKDRSVLSLRDWLKEEVSIRVEAIEMAHGIESEDSARYNRKQYPTKGGRSNPSSFFMASNNQRNSAFNEDKRPKQKPPCACCSGPYHGIWACRQFEQRSVEQRWNFAKEKQLCFRCLSNDHWGKDCRRSQPCKVNGCQLNHHRLLHRQPVTPPSPIPPSPPESSWEGAASREGAGPSNKVAMMTQSHSSSREQCSLRTVPVWLKNNGKKVKVNAILHDASNESFVNEHVANLLGIQEAFQSVQVHVLNNSVETFQSMPAKIEIESVNGDFGKVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEW3</accession>
    <name>A0A6S7GEW3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028282</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000996">
        <property type="protein sequence ID" value="CAB3986307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEW3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="123"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="31925" checksum="25FD6660558A8AA0" modified="2020-12-02" version="1">MGKHKHQRRHKKDKEKERKHKSHKTGRKRNKEARQDRQRSTSCDSSPGPLQKNTGHPVIFFFTPILLKTEFNVHGFVMFEIAILVQTHYFLGQLRRKRHHHADGSKEDNLHGSNRKKKKRETSYSSESSASSYSSDHSDCKDQPSANFSKNNNIQQTTITQYGPFGSPSSLSSYLTCDAIIEVYKYGHSKKSGSRNTLIALHENHKDLQILKSELRKKYGLLTDARRWLIGDFNLEIGICDNREGVSGKVYIASSQLEWENLRTKVYSGMGQYTLLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNP3</accession>
    <name>A0A6S7GNP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002228">
        <property type="protein sequence ID" value="CAB3993285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNP3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="12898" checksum="9ACC35C1BA6BF724" modified="2020-12-02" version="1">MAYKLLFSIFLLLCIAVTNEARTEVRIKLGSGTLKSSGWFGKKSDFVYHVPIGAFHVSLDYKDFSSSGFNIGSGNGKATLSWTTGSRTAKVHAWVNGKFWGTNRVSWTVWASIWKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUP4</accession>
    <name>A0A6S7GUP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085668</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003035">
        <property type="protein sequence ID" value="CAB3997144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUP4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="18234" checksum="54F873C34F6F48F3" modified="2020-12-02" version="1" fragment="single">MAANFFKCLLPFLLLIIHLVSSVPTKKIPKCIVCHKYLDKKLETTRKNLPERHDHEACFGVSYDEPGILCSACRRAVYRYKKTGKTFFHLVVDSESKRVGRPVKRKLQYPKKALDNNSEWMEEYTCFGIIKRSSYGEVILPPGLFEEIDESFRNLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GY97</accession>
    <name>A0A6S7GY97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075799</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003325">
        <property type="protein sequence ID" value="CAB3998334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GY97"/>
    <dbReference type="OrthoDB" id="6153490at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="142"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="18998" checksum="DE0386BD8EA0B459" modified="2020-12-02" version="1" fragment="single">MEEQQRLIASRRAHRAHLTNVLKKITELKEVEDDQNEQHAIVTLGSYLEQLQRKGQVLSELDNKIFELFTKPEDLEADIIEAEDTQSFIAETICTTKNFIENKTKSMNISQHDQAAGASNNIQQTPESNQATSSESEPAGNQPATPEETQPQSSKVSENLPVNLNQPPTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H312</accession>
    <name>A0A6S7H312_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A070854</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003485">
        <property type="protein sequence ID" value="CAB3998984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H312"/>
    <dbReference type="OrthoDB" id="118243at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF47">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3998984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16165" checksum="BFFEAEA2054C20FC" modified="2020-12-02" version="1">MKWAVCEQFRDYLYYVPSFVVFTDNNPLTYVLSTAKLNATGLRWVGELAEFSFTIRYRPGKANADADTLSRTSNDMNEYMKSCTQKTSQDELRTILSTVQLQEKGQVNWVSALTDDPDVLSADAAIQPDSNIITFETTDIQKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4R2</accession>
    <name>A0A6S7H4R2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008581</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003888">
        <property type="protein sequence ID" value="CAB4000655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4R2"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12510" checksum="62BFF77ADF1190C0" modified="2020-12-02" version="1">MLPKCLGDKIEKVQKRAFRIIYPTTDYEDALNIAKCKRLDDRRQELCAKTVKKILNRAHLNRLLPPLREESHELDLRNNSNLTLTKCNTERFKTSFIPAVPANFNNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H639</accession>
    <name>A0A6S7H639_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Major facilitator superfamily associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A069074</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. MFSD6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003311">
        <property type="protein sequence ID" value="CAB3998259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H639"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051717">
        <property type="entry name" value="MFS_MFSD6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172:SF2">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Major facilitator superfamily associated" evidence="6">
        <location>
            <begin position="12"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3998259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="436" mass="48544" checksum="235D8803442AD2E4" modified="2020-12-02" version="1">MSSGIICGGVAVSIAFFFFRASVASVEEYMPLYLRQVGLTATYIGVIPLFGLLTQAVGVPLISYVADKLRARKSFLFLSILFIIPITLLFLLPQYPQQPCEGSIKNVSLRLASHTTISPHESLNRFRLPSTNANVSALNRHKYNQTSSLYGDDQGIDGISTKFSENQSSGILNDGAKLHERLKFFGLMIFLLRGLFELFKRLIVTMLTVAVMTHTKQDKTKYGYYASWGEIGGGLALFVIGITVSRFRHLISCTYTVSDYYLAFVYAAAFQCLTMVPLHWLNFEYFEQRVVNHTEVKAVLLKPHYLLLLAIACHGGLCSAFQTRWEFWYMEELGGTPVVMAVGGLLRRPVVAVWFFLSRSVVDRLGELNGIAISLFVFASSFAALAFATNPWLVIVFDNFQSAAFVLMFTSIVIHFSKAASKASSATIQNLILSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7N2</accession>
    <name>A0A6S7H7N2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064148</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003923">
        <property type="protein sequence ID" value="CAB4000774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7N2"/>
    <dbReference type="OrthoDB" id="3261222at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="74" mass="8449" checksum="FFCEAB46CE1565BC" modified="2020-12-02" version="1">MDNGEITGLISVDIRKAFDSIDHKILLRKMQDQFGVQDFELKWFQSYLTKRSQVCVVDGHTSLAKEIVCGFLQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H845</accession>
    <name>A0A6S7H845_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023226</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004218">
        <property type="protein sequence ID" value="CAB4001965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H845"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="72" mass="8631" checksum="0A4627705EA46B49" modified="2020-12-02" version="1" fragment="single">WSDMKATTGRHNSSESKEEQADEKVVEDVDRMTTKRSHNYPKMIANVRYVTSFMFYTIKRIEEPRPTYKQKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEI4</accession>
    <name>A0A6S7HEI4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016442</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004647">
        <property type="protein sequence ID" value="CAB4003504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEI4"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="534" mass="60718" checksum="62B3D81B5E03A98A" modified="2020-12-02" version="1">MELSASAEPKQSYPLSDQFFFNQVSYTKIEQVIKNMPSNKAPGYDKISINVLKDCYPHILSTLTGLVNASFSQEVFPLQWKKAEVIPLHKEGDHEIAVNNRPISLLPVLSKVTERVALEQFTDYLIETNKLNKHQSGNRKNHSTETLQLFLTECIYQSIDRKNLTAVILLDLSKAFDSISHDILLEKLRKFGTSASATVWFRSYLSERVQSVRVGQHLSDMQRVTHGVPQGSILGPLLFNLYVNEISSMCKDCKIESFVDDSKLFLSFSICDIAESMNKLNADLKRVAAWCCSNSLLINPGKTKFLLFGTKQALSKINLPPLQFLGEELTPVRCAKDLGIIMDECLSFTDHTQNLTSKLMGSLCQISRVQHLFDKKTLISIINSLVFSKLYYCSTVWAGTFKENIKKLQLVQNFAARIISGKRKFDHISSTIKDLGWLSVQDMLAYRDAQMVYKIINGSVPLYLKNFVKRRSDVHNRSTRNSHNLDIPKCRTSFAQRSFGYRAIKLWNSLPNNVRESTSLNTFKQSLKTWLLNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFF6</accession>
    <name>A0A6S7HFF6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078422</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004195">
        <property type="protein sequence ID" value="CAB4001860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFF6"/>
    <dbReference type="OrthoDB" id="5982080at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424">
        <property type="entry name" value="PROTEIN CBG23806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19283" checksum="F389DFFE1CB820A9" modified="2020-12-02" version="1" fragment="single">MSFSLMDFDDVMSSKGSHTIGIVKGQESYDLLKNSFSDIFSVVNDIIKEGKIRVDDIDVPVEIFLGGDYKFLLLFLGMKGATSDERCHSCGVSFKVWEKNNANGGASGTYDFTSLMGTDKKLLLKNLPEKLDGVVKTDSSETVINPWKNSSELYTMLDKQEPSDDFVANYFEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFP7</accession>
    <name>A0A6S7HFP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061516</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004216">
        <property type="protein sequence ID" value="CAB4001950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFP7"/>
    <dbReference type="OrthoDB" id="5988675at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4020.10">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003309">
        <property type="entry name" value="SCAN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038269">
        <property type="entry name" value="SCAN_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888:SF1">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888">
        <property type="entry name" value="ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02023">
        <property type="entry name" value="SCAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47353">
        <property type="entry name" value="Retrovirus capsid dimerization domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50804">
        <property type="entry name" value="SCAN_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="229"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="32866" checksum="309013405F561A97" modified="2020-12-02" version="1">MAEERDELEMRREERKRRAEKEDKAWEVELEREKYQIYVAKQRVPKPIKVREMRENEDIDDYFRIFEMTAKAQLISQDEWLGSLIPRLSEKAKSIYLEIVGPDAQDFNKSKAIILRAYQLNVDHYRYRFRHSEKKAGEDFGQWAHRTRRYLNRWMTVAEAIDTREKILEQIVIERLLDGVGLELQVWLKERKPNTAGKLANLANDCVQSRKGPLIDGKYVSAKRNNNKPRNDDFCKMRDKGYENNKGNPDKPDFGKFQDKLDKSSAERKKPKMRHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPS2</accession>
    <name>A0A6S7HPS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Brain-specific angiogenesis inhibitor 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A021531</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005503">
        <property type="protein sequence ID" value="CAB4006419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5963548at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1240.10">
        <property type="entry name" value="GPCR, family 2, extracellular hormone receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046338">
        <property type="entry name" value="GAIN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036445">
        <property type="entry name" value="GPCR_2_extracell_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001879">
        <property type="entry name" value="GPCR_2_extracellular_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013980">
        <property type="entry name" value="MANSC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011106">
        <property type="entry name" value="MANSC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000082">
        <property type="entry name" value="SEA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036364">
        <property type="entry name" value="SEA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23597">
        <property type="entry name" value="KIAA0319_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01390">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00765">
        <property type="entry name" value="MANEC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82671">
        <property type="entry name" value="SEA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50227">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50024">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="115"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="671"/>
            <end position="704"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="749"/>
            <end position="810"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="828"/>
            <end position="902"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="927"/>
            <end position="1354"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1368"/>
            <end position="1414"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1487"/>
            <end position="1506"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1855"/>
            <end position="1888"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="115"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="831"/>
            <end position="845"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="846"/>
            <end position="855"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="878"/>
            <end position="902"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="932"/>
            <end position="1008"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1041"/>
            <end position="1050"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1066"/>
            <end position="1079"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1160"/>
            <end position="1169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="1187"/>
            <end position="1201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1202"/>
            <end position="1214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="1215"/>
            <end position="1235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1236"/>
            <end position="1253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1254"/>
            <end position="1290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1291"/>
            <end position="1310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1311"/>
            <end position="1354"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1392"/>
            <end position="1414"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="1856"/>
            <end position="1888"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4006419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1888" mass="206078" checksum="FEA9D1CF19FD4612" modified="2020-12-02" version="1">MAILLVLERYSLSLKNTEYSQNVKIDCSDSSKRIHRKNSLEKKYDRSSQNEVISTRKLPEISEKPLDTTSEFGRTYRNLKSYPYKKIVARNFHLQESVPFFIPSISNGISKEITLDDKDKTGQESRPHRKLISKSSAKTPSKRFHLHESIPSFLPSFPNDISKQTLQIPNVKLPSSALKASSKEQETSMCQHKVVLRNVRLKHGRKLATFELRGRVASIVKCVEKCCRRHWCNVAYKVGSYCYSVHCPTDEACEPVKIEDLGILSDYVLLDRPQNMNYRRNFIPVAVIGPGEKMITIQLNITNEKFRAPLADVESLDFLNVAERVENAISILLKASIGFKSCEVVSFRPTPLVANVTLKLSKGSPANKTGSLLLKAVRAGKMDSTLEDASEHFKLSQVGFEMKSSKGESLVCHSEIDYQNSWSLTLYGALDRQPCPRNAQGECLRRCLGSENEKVAWDVPNFSGCTSLEFRDLHEKAKQFKSQAQAKLPLEQIEAKAGIKHVEVLKKLQKLTYHHTFREHLVKQEDTNKTKNTSPRLHDSHKLKIHQLITNKKPKLIHKNESEIKPNPSPKGLLSLTNQLLNIKEKPQEELGINKIKSGKNYTLSIADKIGLLQPNTLSLPSSEPARPGTYHVLNQHDPGLPQHVPGPVQHETHPLQHETLPIQHNAHPMQHVPGPVQHETPPVQHEAHQAQHETPPVQHVSNPLQRDPHPVIEKGQNRNDISVSVSVSGEFGQPVTNETDLSGVFLKSGPDNIRSHIPTPGSRSGRNPSTYPPVQGPSYGGKNIAPPKGGYIPTSDPRGMNYLKSKSKRPKTISNTLLNWLNGALKKYGNNPSPHQQKSYQTDASRSLSNSLHSRLQRHNGGSLLGDTWKNADHSGTLLNGQSNRPVSESSYASVQPQRNPVQALSKRSLVYNSFTKSLKDGIRSKRQADVWNQGQNFSPTSSYNSDPRQANPSSGYSAQAYPSNAVQGQDGQGYPSTNIGQTSDGDGSEKTSNNAITANPVNSKNAYFTGIDDNQDSQPGDLKSSDSDNNAVDDHTPPLSESSNSNLLAVPSRPKSKALPVQTPGSSSPASSSSLVGAPPPPSLLSSLNLVGAPPPPSFLSSYEDNPPPRPLSPLPSSARPQPHPPPISPPTFDDSNPTHRPLSPPSLPGVYSSFKDPPSSSPTSYSPSPPQADTPTSRPYHLPTSPPAPSSDSPPSPTSPSVAGPPASYNPAPNPAPPPSYSPAPPTTPPSTRPSYNSAPPSQAYSQPPSTQGTNPTQPNSISTYGSTYGANPGYNSSAYPKQSDPNSTYDSHLSSSESYYTSAPTYQGDNPQYNSSYYPTQPNPNTTYDSSSPTSQPTYQGANSQNNSSTYLTEGADARYNSSAYLAPLNPNPTDGSYLDTPNKDPSRLSSKLTNFTSTNGINNDKYTYNNSGFPDQRAASDFSMQNIGDPLNNRVTNDSWNKLSSDYNMTTQPLSINSTDSNSGYNNIYNPDYNLTFQNINGNLATEPPEPRTSKSPKTSDISIQNSLYKDLGDSQTVVGFTNPSSMQANQNGSSSDMQELGTILNDIHSPRLTIEDMKKRIKEFSTGYNDKQATGQKKTLAEQDNGSEDALVKGKHIAPMFGGDLLLAADTVKHLAKFNDYIRPPIVLDDVKAFLKSCSNILDMMNSREWKNAQRHVAKLNKIGVNIMSDNNAVDWEQASRRTIAGTKNPSTLYELVEAIEAFGLSASYQVKKPIKEPIITKNIVMELRTIQSDIQEPSPDITFPNISDPRIRKWTKQSNVISLSPAALDEVAQGVNVEAHVSGVLFKTIGNLSIPVEEGQGSNETVESGNLMSMSVYPKITGDLDPPIRIALAHLNVSWYKNNIIGGGDGDDGGDDGGDDGDGDDGGDGGDGGDGEDGNSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HR13</accession>
    <name>A0A6S7HR13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Histamine H2 receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A020438</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005800">
        <property type="protein sequence ID" value="CAB4007446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HR13"/>
    <dbReference type="OrthoDB" id="5981700at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050569">
        <property type="entry name" value="TAAR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249:SF372">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24249">
        <property type="entry name" value="HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4007446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="323" mass="36585" checksum="CA1433A7F4A05719" modified="2020-12-02" version="1">MCYVMDDEAQVLTSFPTNESILVHIFALILIIILTFTTISLNGVTVFTIWRSRILRQKSSNFTILLQSVVDFANGVFIMPLITFHWASEAAGSPSCVAAYVVKKSAMLMTFYTLITLSVMNFDRYMGVLHPFVHRRVVTNERLLAYVIAVCTIQTVIYGFSVTHNKIMRPILVATTTLFIFTTVFVYFKIFLSIRSRNRVGVILVGKNIESDAIRLSRRDVSEKTSAENRSGKAEFLKELKAAKSSFLVVMCCLVCYVPGTLSFGPLNLMSSFLAVALKVWFVLLAMLNSTMNSIIYFWMNNMLRKLGKDMVKSMWNSLTRQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTV2</accession>
    <name>A0A6S7HTV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Structural maintenance of chromosomes 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A078290</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003392">
        <property type="protein sequence ID" value="CAB3998590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTV2"/>
    <dbReference type="OrthoDB" id="10255539at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051276">
        <property type="term" value="P:chromosome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03273">
        <property type="entry name" value="ABC_SMC2_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000278">
        <property type="entry name" value="Structural maintenance of chromosomes 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027120">
        <property type="entry name" value="Smc2_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036277">
        <property type="entry name" value="SMC_hinge_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43977">
        <property type="entry name" value="STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75553">
        <property type="entry name" value="Smc hinge domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RecF/RecN/SMC N-terminal" evidence="5">
        <location>
            <begin position="2"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="323"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3998590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="550" mass="62393" checksum="32677CEEBD4F50D9" modified="2020-12-02" version="1">MYIKQVIIDGFKSYAQRTEVNGFDPQFNAITGLNGSGKSNILDSICFLLGISNLQQVRASNLQELVYKGGQAGVTKATVTITFDNSDKKQSPVGYETFDELTVSRQVVIGGRNKYLINGCNANNTRVQDLFRSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYESKKLSAQKTIEKKESKLKEIETILNEEITPTLKKLKEERTSYLDYQKTVRELEHLTKLYVAYQFVQAEEMQKKSVGEYDEMANLIKSLKEKSVQVEEQIKVLNAEIAELEKKRNEESGEAIKNLENKVNELSKVDVKANSDVKHAKNQLAAENKKKKALEKSLTGDQTQLTSKESEMKKLSDTLVELQKKSEEDTKQVKNAQNHFHAVSAGLSSNEDGEDQTLADQLLGCKNDISNAETELKQAQMKAKHAETELKKKQSELKKTEKDYSKDKVVFDNIQKNIKKLEAEMNRLNYKDGQEEGLIQRKRELEAEVAELRTKTEMLEARFPNLQFQYKDPEPNFNRRKVKGLVAQLIRVKDVSTATALEVAAGNRVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUS0</accession>
    <name>A0A6S7HUS0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">BTB POZ domain-containing KCTD3 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A064886</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the KCTD3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006078">
        <property type="protein sequence ID" value="CAB4008289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HUS0"/>
    <dbReference type="OrthoDB" id="6077599at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.710.10:FF:000038">
        <property type="entry name" value="BTB/POZ domain-containing protein KCTD3 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047876">
        <property type="entry name" value="SHKBP1/KCTD3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15859:SF1">
        <property type="entry name" value="BTB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15859">
        <property type="entry name" value="SETA BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4008289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="654" mass="72413" checksum="2542C671766165BA" modified="2020-12-02" version="1">MSGEIVQLNVGGRRFSTSTQTLIWVPDSFFSSLLSGRIESIKDETGAIFIDRDPDAFVPILNFLRTKELDLRGLDLKVVKHEAEFYGITPLVKRLTLCEDISGSKCGNVYFHGYLHTAALPAIPSKTYFKLIGRSDMLSTSSLTSEDQETSNTRHGEIERIEDLHRVQLLTGHHNWLAVAYPRCVCCFQLADHKGSREQVFTSPFLEDTVEYLALNTRVVGQWGDKLVAASSGSKFQLWNCTQGTAIGKFDLGIQIDALFFVGSQVVAISYTGKVGIWNSRMPRHWQVQEVIPISSYDTGGTLLLLGCHNGSIYYIDMEKFPLRMKDNDLLVTELYRDPAGDKVTALSVYLTPKSCISGGNWIEIAYGTESGVVRVIVQHPETVYAAGHGPQLFQTFTVHRSPVIKVMLSEKHLISVCSDYNHVRTWNVTRFRGMLSTQPGSTPLASFKVVSLERSEPHPSSASGNMLGPFGERDDQQIFVQKVVPDSDHLFIRLVSTGKRICTIRSVDGSMIISYCVNECDGSSGMGSRPRRYLFTGHSNGCVQMWDLSSALQQANKQTDNMAGPTQDELLQVLDNCDLSNSRCTTPSVSPAASLYNTAGSSRVRCAGAALYDSHLASSIEEQHELDVVNEIHDDGENADMPVNRPTYFVSQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVP5</accession>
    <name>A0A6S7HVP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005806">
        <property type="protein sequence ID" value="CAB4007470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVP5"/>
    <dbReference type="OrthoDB" id="10644675at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21058" checksum="ECA905252D9BA145" modified="2020-12-02" version="1">MDISKAFDKVSHTVLINKLQQYNIGGSLLQWFTSYLHDRQQRVTTLGATSSKKPVCSGVPQESILGPILFLLYVNDLPDAVTNSTVACFADDTKIFRRIDSITDAMLLQDDINNLESWSMSSGLVFNEGKCKNISITRRSQPIHHVYSIKDWMAANKLSLNKSKTESDSINLIRLYFCGDTSSVTATGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HW78</accession>
    <name>A0A6S7HW78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A056435</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003550">
        <property type="protein sequence ID" value="CAB3999261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HW78"/>
    <dbReference type="OrthoDB" id="5976274at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="15490" checksum="6A2D1A34118D3216" modified="2020-12-02" version="1" fragment="single">MRQEIKQMENKYGFPQAFGCVDGTHIPITQPSENPHDYFSYKMKYTLNVQAVCNWRGLFLNADSRWPGSVHDRRVFENSKITTLLKEQRLLMVYQENFIGYDKIPTIFLGDPAYPLLPFCMKEYPSPQSNEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWW9</accession>
    <name>A0A6S7HWW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046985</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006148">
        <property type="protein sequence ID" value="CAB4008523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWW9"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14465" checksum="D896569567829BC9" modified="2020-12-02" version="1">MARIKRTAIALFLPKGEKKAVKKTCHALRTNDVRRVTGQDDISKEQVRFYKELYSKVPTDKVAQDQLLNLLDRKLTGEQRDSCGGQSFFTWNEVSDKGARYLHCKLFVMVAEVFGQEIRKCPEIQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZD5</accession>
    <name>A0A6S7HZD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007101">
        <property type="protein sequence ID" value="CAB4011294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZD5"/>
    <dbReference type="OrthoDB" id="2248014at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001394">
        <property type="entry name" value="Peptidase_C19_UCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028889">
        <property type="entry name" value="USP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018200">
        <property type="entry name" value="USP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00443">
        <property type="entry name" value="UCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00972">
        <property type="entry name" value="USP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50235">
        <property type="entry name" value="USP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="336" mass="38065" checksum="CB61A4CBE1BEABF4" modified="2020-12-02" version="1">MESKVMAAIGGCAVLAGVAYILQGGKKTADDRNGHLGVPGLMNLGNTCYLNSVLQALASVSAFVSWIKMCSDENKNQQKIGKLTSELSKFMQRPAVQRIFRTLPGKKESFKEAVEALEGYFAPRTNVVAERHKFRSRKQNADETIDAYLTSLRELIKTCEFGALEDEMLRDQIVEKCYSKQLRERLLAHEELDLAKTLRIARSSESAIKEARLLSGHETKDNIINIDRLNNPDKRNRNYNSENSKCYRCGGVGHKPADCRAISMKCNNCQRLGHFARVCCSKGVSRKPYLESRMNLKRLRVKRRKRIETSVQFDAKIQIVIIRVLKANQKTNRFCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5N5</accession>
    <name>A0A6S7I5N5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">cAMP-dependent protein kinase type II regulatory subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A020875</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cAMP-dependent kinase regulatory chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007342">
        <property type="protein sequence ID" value="CAB4012003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5N5"/>
    <dbReference type="OrthoDB" id="417078at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005952">
        <property type="term" value="C:cAMP-dependent protein kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030552">
        <property type="term" value="F:cAMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004862">
        <property type="term" value="F:cAMP-dependent protein kinase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034236">
        <property type="term" value="F:protein kinase A catalytic subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd12099">
        <property type="entry name" value="DD_RII_PKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.10:FF:000017">
        <property type="entry name" value="cAMP-dependent protein kinase type II regulatory subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.10:FF:000108">
        <property type="entry name" value="cAMP-dependent protein kinase type II regulatory subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.890.10">
        <property type="entry name" value="cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050503">
        <property type="entry name" value="cAMP-dep_PK_reg_su-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012198">
        <property type="entry name" value="cAMP_dep_PK_reg_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003117">
        <property type="entry name" value="cAMP_dep_PK_reg_su_I/II_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11635">
        <property type="entry name" value="CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11635:SF152">
        <property type="entry name" value="CAMP-DEPENDENT PROTEIN KINASE TYPE I REGULATORY SUBUNIT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02197">
        <property type="entry name" value="RIIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000548">
        <property type="entry name" value="PK_regulatory"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00103">
        <property type="entry name" value="CAMPKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00394">
        <property type="entry name" value="RIIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="cAMP-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47391">
        <property type="entry name" value="Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00888">
        <property type="entry name" value="CNMP_BINDING_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0114">cAMP</keyword>
    <keyword evidence="3" id="KW-0116">cAMP-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="9">
        <location>
            <begin position="148"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="9">
        <location>
            <begin position="271"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="112"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00067959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4012003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="397" mass="44044" checksum="8952D6BCFB783D7C" modified="2020-12-02" version="1">MSGYVGDFSVPQGLHDMLQEFVVQCLIEKPEDLAAFAVEHFTKLRNSGKHGNVGEGIQATRPVAEANDNNIGAQKSTAIVNGAEDMADTTSDEEMVPPVRMPVRGRRRAVAAETYDPSKEDHDVKKVVHPKTEEQRSRLKHAMQNILLFKACEAEQIQDILDAMLERKVQKGDEVITQGDDGDNFYVIELGTYDVLINIAAGERKKVHTFVDSGSFGELALMYNCPRNATIIAQSEGILWALDQAVFRRIVVGAAARKRRSYESLLEGVPMLSELTDYERANLADALESTSFENHECIIQQGDSADCMYFVEDGYIRIVLGKGAESKEISVLKKGDYFGEMALVMNQPRSASVYAKGKAKCAKLDVGAFERLLGPCMEIMKRNIENYDSTRKAFGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGV7</accession>
    <name>A0A6S7IGV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A084780</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005108">
        <property type="protein sequence ID" value="CAB4005152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGV7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031640">
        <property type="term" value="P:killing of cells of another organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16903">
        <property type="entry name" value="pesticin_lyz-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.530.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023347">
        <property type="entry name" value="Lysozyme_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0929">Antimicrobial</keyword>
    <keyword evidence="2" id="KW-0081">Bacteriolytic enzyme</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043545922" evidence="4">
        <location>
            <begin position="24"/>
            <end position="713"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="32"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="32"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="65"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="105"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="135"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="264"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4005152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="713" mass="78537" checksum="48D0DFB922EA2A4F" modified="2020-12-02" version="1">MKTNVHSIVMVIAVLCGLSFIEGCLEIDASFSTPRVSSSGTQTTHLRPTNTSPQTTDIIHKPTKVSDQLQPTTLNSQSSIVIPQPANASPSPTDINTSPTDASLPSIDSTPSLTDTSPSPTDTSTSTMDTSASPMQKSSLPTDTSRRPTNASPSPTEASTRPTKASPSPTEASTRPTNASPSPTEASTRPTNASPSPTEASTRPTNASPSPTEASTGPTNASQSSTEVNTRPTNASPSPTEASTRPMDSTTSQTGASTPATNESPQPTNVSPPSTNTSPRPSPQPTNASTPSTTIGCKCAEPPQKKPVKKDDCFKVNRGQLTFDAEGQEGGRFHSRKLHVPTDKSGLTIGRGYDMKEKTKKQIETDLRKAGIDKAKAKLLSCAAGLRGKAAKKFIKDNKLENFEITPCQQKKLFEITYEAMEKDVRRIVNKKDVVELYGKTDWNKLLPAIKEILIDLRFRGDYTPETRKIIQRAVAENDLKTFTALMEDRNNWKNVPKDRFQRRVNFLLNFKVNRGQLTFDAEGQEGGRFHSRKLHVPTDKSGLTIGRGYDMKDKPKKQIEKDLREAGICKAKLLSCAAGLRGKAAKKFIKDNKLENFEITPCQQKKLFEITYEAMEKDVRRIVNKKDVVELYGKTDWNKLLPAIKEILIDLRFRGDYTPETRKIIQRAVAKNDLKTFTALIVDRSNWKNVPKDRYQRRVNFLLNFKVNRAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGV9</accession>
    <name>A0A6S7IGV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009095">
        <property type="protein sequence ID" value="CAB4016383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGV9"/>
    <dbReference type="OrthoDB" id="10581476at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12306" checksum="46D56DE33B16CC3A" modified="2020-12-02" version="1" fragment="single">MKNGGVVVSFRGVRVYTRSGVGMPGSETALDELMCPILGDCLEDGIAGKRADDLYCGTAHQLEEDPRWPTKVQYQAFSIYNHYLAHRDAYRMQAHTELLQGHRVRLPIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IK53</accession>
    <name>A0A6S7IK53_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A016083</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010472">
        <property type="protein sequence ID" value="CAB4019465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IK53"/>
    <dbReference type="OrthoDB" id="5986544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="154"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="374"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="471" mass="53977" checksum="DF8BB2BCD96945BE" modified="2020-12-02" version="1">MSMYRELKGPKEPIQASRTSLTSYTGDKLNLVGKCTLKCMNRRLNFFVSKTDQYPILGFQASQELDIIKVVMSTNKEGDLKEKYSDVFKGLGCLREPYHIELDPEVSPVINATRKVPVAIKGRLKLELEDMEKQGVIRKVDRPTDWVNSIAIVEKPGTGRLRICLDQKHLNEAIRQEHFQLPTVEEIVSRVSGAKVFSKLYARHGYWQIPLDEPSQLLTTFSTPFGRYCFTIMPFGIKSAQEVFQKRISQHLDDLEGVATEIDDILIWGSDEQEHDARLEATLQRCEEINLTLNVDKCKFNVNEVSYCGHNFTKDGVKPDESKIKAIQGMPTPSSKEIERLLGTVNYLAKFVPNLATITAPIRELLKKDIEFYWSHEQTKAFDEIKEILTQQPVLKFFYPTKPVIVRCDASQNGLGAVLIQEEQPIAYGSRSMTEAETRYARLRKNYSLFYLLLKDSMRTPMAWRESSCRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISK0</accession>
    <name>A0A6S7ISK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010694">
        <property type="protein sequence ID" value="CAB4019930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISK0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="295"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="295"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="329" mass="36276" checksum="E24F3647193BC65F" modified="2020-12-02" version="1" fragment="single">MLEASKVSTGGYSDKAIDEVLTADCSTLDELEDFIDRSFQNANILMQNNNTNISSAQSIDSSTPVRTQDEAELGITVKQFHMFKDKIESDIDLSNNTIGFKESIDDVVINEVNLPSSSATSIPLDSISKIASPNEVNHAENILESTYINILEPTPISRPANQIDAASQVCLDIIGDNSNYLSNCRCSCGVLAADVEGVKLDITTLSNRIDSIANANTKYSHKDKEIYRLRSELSIEQARSEKLESELSLFVKERSLEIEKLNLTIVSLENKNASTFAAPMNNNNSKINKNTLMNKNNTNGHRNNGHHNNNELNQCKPQNVSLQPFIPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IU46</accession>
    <name>A0A6S7IU46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TNF receptor-associated factor 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031503</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011327">
        <property type="protein sequence ID" value="CAB4021223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IU46"/>
    <dbReference type="OrthoDB" id="6499288at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009898">
        <property type="term" value="C:cytoplasmic side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005164">
        <property type="term" value="F:tumor necrosis factor receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049342">
        <property type="entry name" value="TRAF1-6_MATH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF138">
        <property type="entry name" value="RE66324P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21355">
        <property type="entry name" value="TRAF-mep_MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12016" checksum="967AED206AD559D7" modified="2020-12-02" version="1">MCAKLYMNGDGFGKGSHLSLFFVVMKGDYDALQTWPLQKKITMMLLDQGNGDHMIDAFNSDPQSSSFQRPKSDMNIASGSPLFMPLGSLNNRQYIKDDVMFIKIIVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWV7</accession>
    <name>A0A6S7IWV7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Kinase</fullName>
            <ecNumber evidence="8">2.7.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A070189</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>1D-myo-inositol 1,3,4,6-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12717"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57660"/>
            <dbReference type="ChEBI" id="CHEBI:57733"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.140"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>1D-myo-inositol 1,4,5-trisphosphate + 2 ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + 2 ADP + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:32359"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57733"/>
            <dbReference type="ChEBI" id="CHEBI:203600"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.151"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the inositol phosphokinase (IPK) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.-.-" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020011400">
        <property type="protein sequence ID" value="CAB4021369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWV7"/>
    <dbReference type="OrthoDB" id="338650at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051765">
        <property type="term" value="F:inositol tetrakisphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008440">
        <property type="term" value="F:inositol-1,4,5-trisphosphate 3-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032958">
        <property type="term" value="P:inositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.160">
        <property type="entry name" value="Inositol polyphosphate kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005522">
        <property type="entry name" value="IPK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038286">
        <property type="entry name" value="IPK_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12400">
        <property type="entry name" value="INOSITOL POLYPHOSPHATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12400:SF51">
        <property type="entry name" value="INOSITOL POLYPHOSPHATE MULTIKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03770">
        <property type="entry name" value="IPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56104">
        <property type="entry name" value="SAICAR synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00036164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00036525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4021369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="381" mass="43717" checksum="4D14588710A56FBB" modified="2020-12-02" version="1">MLLNGIAMPEGYSVYGHQVAGHRFETGKQGMLLDSDGKLLKPIQAPPRGEREVEFYQSLFECKTSDQTTLKLCQFVPAFYGVKHVVSPDLSLKDILDHMRLTAGLQSQHFFDNYIILENLTRHFKKPCILDIKIGKSITDHLATQAKRERAARKYPEQEQFGFRILGMKVYNKSSKHFKFYDKTFGKNLKTHKEVLTGLKEFFCSAEHGKGHIEEILENLEAIKIWAVEQRIFRLYSSSILIIYEGDETLKTNGLVKENSNSDLNANDDTSGDNEMDSMVEDTENAFQFQASDNSCKIQAQLCTETLVAQNECSNCVTDSLVKCWNKRDCYLENNIQPQKPKVNIRLVDFAHTYIGHYDAPDDNYLYGLNNLICYFEQLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXI0</accession>
    <name>A0A6S7IXI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012852">
        <property type="protein sequence ID" value="CAB4024126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXI0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="28060" checksum="7D5CEAB9A2C86FE2" modified="2020-12-02" version="1">MGAAPESYGSLLSSMLMPKLPPNLQLVVSRMVKENEWNLDKLLNTLQQELEARERIKKGSKSTTRCYSCKGRHYVSICKGKKPPPPSPRDLLEEHGQSGSNKSKESPSLGTHPDATVCHTTSSNCVLLQTARANIYNPDNPNAPKVKARLILDGGSQCSYVSSALTGTLGLQSKSQRSVNIKTFGFSETNAQVIDVQDLPSSRQPPPIADYSSGQHDAKVDIPIGSDHYWKIVTGKTRQGDSGPTAIQTRLGWVLYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJY6</accession>
    <name>A0A6S7JJY6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Malate dehydrogenase, cytoplasmic</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A003334</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LDH/MDH superfamily. MDH type 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018666">
        <property type="protein sequence ID" value="CAB4032755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJY6"/>
    <dbReference type="OrthoDB" id="1510206at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016615">
        <property type="term" value="F:malate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006108">
        <property type="term" value="P:malate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000144">
        <property type="entry name" value="Malate dehydrogenase [NADP]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.110.10">
        <property type="entry name" value="Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022383">
        <property type="entry name" value="Lactate/malate_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001236">
        <property type="entry name" value="Lactate/malate_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015955">
        <property type="entry name" value="Lactate_DH/Glyco_Ohase_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010945">
        <property type="entry name" value="Malate_DH_type2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23382">
        <property type="entry name" value="MALATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02866">
        <property type="entry name" value="Ldh_1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00056">
        <property type="entry name" value="Ldh_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56327">
        <property type="entry name" value="LDH C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51354">
        <property type="entry name" value="GLUTAREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactate/malate dehydrogenase N-terminal" evidence="4">
        <location>
            <begin position="133"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="Lactate/malate dehydrogenase C-terminal" evidence="5">
        <location>
            <begin position="281"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4032755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="466" mass="52083" checksum="BB339D7C244C0ADA" modified="2020-12-02" version="1">MAKYVIAGKADCPFFAKAEMLADELQKVLINFKVHKIAVSPENWPGWLKQTCEEHQWKHTTSPLIWREIVDRGGKGLYLGGCDDFMEMAEAYYGIRSTKMSEELGAISKENIATKRVLDEEEIEALKAINPLRITITAAASPVNYIVLNSLLSGEIFGFEQDLSLTLLDTPEHQEALSGVVMEVIDCAWNLLRDISQTSDTTQAFKNADLVLVPDADCSTEDVDILVQNAIVYKQYGELIEADAKKNARILVCGKTANLLASVISAFAPSIPKNNIYALSRLQENRAKAVLARKLKVNSCGITDLIVWGCPGNDGLFDISMSQVKGYDGAIWAPHIETFSRSVVEMIYDHKWVATEFLEEVNKHEESLKEEHKFSPSLSAGVAILDFLKEWWQGLANQMTSLGVISKGWYGVPEGLVFSFPVKFQDDEWHVMDDLDISDDVSYRIKQIGESLKNKTDMVMQILTKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JKJ2</accession>
    <name>A0A6S7JKJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MAM and LDL-receptor class A domain-containing 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009409">
        <property type="protein sequence ID" value="CAB4017111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JKJ2"/>
    <dbReference type="OrthoDB" id="6107927at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051560">
        <property type="entry name" value="MAM_domain-containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23282">
        <property type="entry name" value="APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23282:SF142">
        <property type="entry name" value="MAM DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00629">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50060">
        <property type="entry name" value="MAM_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="227"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28040" checksum="6B2641698B8832B5" modified="2020-12-02" version="1">MDSLWSLSGDQGNGWHQAQVAVNNQMASYQFVIEGVRGKSFIGDIAIDDISLMDSCPARDKFFCDFEDLNSCQWTQDKSDDFDWTRNQASTPLEGTGPLTDHTKSSGRTSDHEDVGGPSNAHKFPGDTELNERPDTLKTGATSDADDQEFFEEDDEYVIPASGEPQHETPGQNEIYEEPKLSPENPVYTELDLNGRNTTEDGTYQKLVKQDSDYVIAAHERRESYQDIKMGENFPDYTELDQSKRETEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JNC9</accession>
    <name>A0A6S7JNC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066882</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018382">
        <property type="protein sequence ID" value="CAB4032411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JNC9"/>
    <dbReference type="OrthoDB" id="6597828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="280" mass="31298" checksum="3FFE675294DF5821" modified="2020-12-02" version="1">MSNATKRKAENEKILQKEANTCKRITSFFSKATGECNQSHIPNRVPNSENVQEADISEWVPSSEDVQEEFTSDSPMGAESLSTCDQFQDKDSVGNCTTVNSDTSTISSVVPESSLGPSLENDETCRETCQESNQRCQVYLYRGYPLNINAIVKKAGPGVLYLYKEKSKTRSANQEKNKTRSFVKCLVCAEYEEEAKRFSTNHQVYLAYGVRCDGKKKMQDVVDHLLGAAYDAAIKLKNLSTQWATKAPNHPWLRTLKNHDSSVIRTLTHMAVESITTANC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPZ3</accession>
    <name>A0A6S7JPZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012017</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017456">
        <property type="protein sequence ID" value="CAB4031230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPZ3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13538" checksum="13E101E0D90AAA6C" modified="2020-12-02" version="1" fragment="single">EFKDFLEKNFRRKLSFDHICDILEGQAIPQVDSLVAPTLDPPMLSHVSYQNKKFVQERDKELAVVQRALLNITGPLCTLHDRLENNLPVSPTELKLLVEQSLCLVGSANSQLSVLRRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSG2</accession>
    <name>A0A6S7JSG2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087584</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018926">
        <property type="protein sequence ID" value="CAB4033064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSG2"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="998" mass="116069" checksum="2F947DEDF2EAEA44" modified="2020-12-02" version="1">MSKSKLKKCLRNLKLQNGKLEEIKYVSRLLRKKLQSHVQRNYEEELSKDFWKFCKKEFEESETQEPNFDESSCYDYFRNIFFEKHKNRTFNLPSWLKPFPVPSSNFDLECPTYQEITKIIRKMKSSGSPCPIDQISIIPFKRCPILRTQLWRLLSKCWTEKYIPTIWKRAVAVLIYKKDSPDNPANFRPIVLEPGMLKVFTSAIRNKIFKFVRDNKYIETNIQKGFWPGLSGTVEHTELLNYLLNHARNKQRSIIVTLIDLKNAFGEVHHNLIKSILKSHHIPDEITGMIENLYTDYGISIVTKNFITIPISVERGVLQGDCLSPLLFNLCVNSLINTINDERIQCLGYVNDISLNPRHWFQFADDAAIISAHNEDNQLLCNAFSKWSSWADLYIRVNKCHTFGIKKFGTKAVQYKPTIKISGQQVPPIEDGESFMYLEHNIQKGFTPNLSGTMEHTAQMANIINKARIKQRSHVITLLDLKNAFGEVHHNLIQSVLGYHHIPNHMNNLIKSLYTDFKTSVITSEFRTHFIPVGRGVLQGDCLSPLLFNICFNTYIQHIKAEKYRQFGFSLQLLNPIHWFQFADDAAVITGQESENQHLLNRFSIWCQWSNMVVRVDKCSTFGIKKVLSKSAQYLPKLLINKDLIPTIKTGESFEYLGRHFDFNMTNEKHKSEVISIIDELMSEIDLKPLHPKNKILLYSRYVLSKLSWHFTVATISKTWVVENIDSSVNKYIRKWLEVPISGTLKNKLRNRLKCQGSFFENVSKFSLSQLNAIWSVSQSKLPKNIFNFTIRYINNTLPTRKNLSRWGISSSSDCSFCLHPESLLHVVAGCQHYLERFTWRHDCILTFLAKTFQSLNECKLHVDLPGFESPSIITGDEYRPDLLVSTSDKHLYVVELTVGFESNLTNNVNRKKAKYKNLIRELDQNFTSVKFINLSVSSLGVFDKECHTCVKMLNELRLDNQHQQYCIRKIISIAIRSTYYIFCCRNKEWTNPELMNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JW84</accession>
    <name>A0A6S7JW84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054705</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022771">
        <property type="protein sequence ID" value="CAB4037136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JW84"/>
    <dbReference type="OrthoDB" id="5970360at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13590" checksum="E61F0DFC5D13AB68" modified="2020-12-02" version="1" fragment="single">APGAKVWREKNEGLSIGCTSKGKKAGSSSKVAHFMVCISYGKGVYFCEQYDKMDSPYFADFVKRNFRKLIRNSCNPSGKTFLQDGDPSQNSAIAREAMKKLGVQVHSIPPLSLDINPYQFCNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JX59</accession>
    <name>A0A6S7JX59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A066365</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019624">
        <property type="protein sequence ID" value="CAB4033870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JX59"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="57"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4033870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="714" mass="79624" checksum="56F4186B04C7D727" modified="2020-12-02" version="1" fragment="single">TRKELLNEDRTFQDVLKVAIAHEVACKETLAFQNNTKPVNESVHTVGRNQIPDKFSNSRNTSNSNNLRPPLPILPRNFHMPVIPVEVLNILGPSVDLEMLYAADVSGLVTLLVFARESVPCALSLAPKPSSAVSASPIVTVGKKDGDEVRVCGDFSVTYNACAEVETYPMPKIEDMHSALRGCQVFSVLDLKQAYHQIPISTESQKYLTINTHLGLFAFKRLPNGIHSGPAIFQRIMDGLLADIPKAVSRLDDILIAGTDYEDHLNTLSQVLGRLLKFGFKLNKSKCKFLQSSVVYLGHLIDSAGLHPTEDKLAAVPPLNNLLKKNVPWKWTKSEDAAFKAAKNLLLNSRTLVHYNESLPLVLSCDASSYGAGAVLSHVINGKHQPIAFASCTLTEAQRNYSQLEKEAFSIIFGLKRFHQYLCANSFTILTDHRPLLTLLGPHCSVPAHTASRLQRWALILALYHYKIEYRSTTAHADADSMSRLPLPQTWCPKSENVECYFFEAGVVTNVTAEMIKKKAQVDPVLSLVYRYIQSGWPSVVDADMIPYKNRSDQLTIHQGRILWGARVVVPPSLRSEMLTELHDTHPGMTRMKGLARSYVWWPKIDSDIEQTVSTCPVCQKMRSEPAKAPVHPWIFPSQPWSRIHIDFAGRIAGKMYLVVIDAYSKFPEVVKMTTTTATTAINALRDIFSRHGLPAKLHDQLVEMGCVEIRCDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1L5</accession>
    <name>A0A6S7K1L5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035092</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022944">
        <property type="protein sequence ID" value="CAB4037318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1L5"/>
    <dbReference type="OrthoDB" id="5987109at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="167"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="34469" checksum="23908C238CFC065F" modified="2020-12-02" version="1">MEVDTGAAVSVMNEDTYTLLKKKHPNLELKESKVRLNTYTGEQVKVLGQLETSVKYEDQEGVWPLLVITGKGPNLIGRNWLQKIKINWKNLFQLKEDKNTSVKVNKARPAPYALREKVEKDLERLQEEGTIEPVQFADWAAPIVPIVKDDKSIRICGDYKVTVNQAAKIFQRTMENLLQGIPFVVVRVDDILVSGSNDEEHLANLEEVLKRLSEHGLRLKKKKCAFMVNEVVYLGQKINSQGIQPIQEKVRTITNAPAPTNVSEVRSYLGMINYYQKYLPNLSTILAPRTAQPVGKREKLEME</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8V8</accession>
    <name>A0A6S7K8V8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029430">
        <property type="protein sequence ID" value="CAB4042076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8V8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13964" checksum="8F8677574212C6F6" modified="2020-12-02" version="1">MVIETLTNALRKDPKIEGITIPGSPVESKISVYADDGTLTLKDDLSATRAFDQIERFEPASGLRKTEGTFVGQQVGRQHGPIPIEWKMESVRVLGTNIGHNMQQDWETPTTKIEETLERWSKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9X1</accession>
    <name>A0A6S7K9X1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026501">
        <property type="protein sequence ID" value="CAB4040241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9X1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="36"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="115"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="139"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="24535" checksum="CD5978E5636E098D" modified="2020-12-02" version="1" fragment="single">MAYRRPTAPTARSDNLENLVRQVVNHPSFQDAVNNSTSQRVNESTSSSSSESHTDGSCEPSVSSVEGSATSVQAGLNVASSSNQNSARRTPREELQALFHRGTSNFQQSLPQFQRRTSWGPSPSSRSRSGSQGKLKPYTNTNTNSSKGKNSNKKTTFAREVVLLRRPSDSMVRGGAKAELQRLGHAISSFEFDKLWSANEVQEKLEEAFKKPLESIDGVLDNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KG16</accession>
    <name>A0A6S7KG16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Titin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019920</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036264">
        <property type="protein sequence ID" value="CAB4044796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KG16"/>
    <dbReference type="OrthoDB" id="10010359at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24556" checksum="5BF8CBB7ED1D33DE" modified="2020-12-02" version="1" fragment="single">LPDVPGKPSISNIKSQSAVITWEAADDYLESRLERYVVRVSNENYTMKINVTSGIEVKNPTYHLRNLTEHTSYKVSIAAENVIAISSFTAEVTFLTFYGPYLILKEQGLKIVEVNEKNITIPCTGRSYPTPSVIWKKDGEKIHLRENLTEASNNFVYQISTLSRLDNKSNVSIEVTSTLFLRTNGIKYEDHGNYTCEVLNVNESSIPLRETVEIQCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJR3</accession>
    <name>A0A6S7KJR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A045303</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030809">
        <property type="protein sequence ID" value="CAB4042781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJR3"/>
    <dbReference type="OrthoDB" id="5973823at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="84"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="97"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4042781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19263" checksum="7A9A60BCA3BDBC8B" modified="2020-12-02" version="1" fragment="single">SAQIVSRKFSRLYERHKDNINGDCSKECTRFYISANINTEKPATLHRLETLDNQRQRTKQGPKPECGRCSKRDPHQCKFRDTECFLCNKKGHMARKCRSNSKVTGKNQRNNNPNSGTSSNYLNMKDDEIEEEDDNDGIYSLGKTRAEPQVVDVLASNESLKMEVDTGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMY9</accession>
    <name>A0A6S7KMY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078862</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020049211">
        <property type="protein sequence ID" value="CAB4046287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMY9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="7954" checksum="12A45E915243C961" modified="2020-12-02" version="1" fragment="single">MDGPPMRIFLRDDIDINPTRILTARQIPLARQAAAEEMLEKALANSVIERVDHPTDWISPAFFVPKPDGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KN14</accession>
    <name>A0A6S7KN14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotide-binding oligomerization domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034657">
        <property type="protein sequence ID" value="CAB4044354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KN14"/>
    <dbReference type="OrthoDB" id="8061911at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="196" mass="22785" checksum="3371B78D10342230" modified="2020-12-02" version="1" fragment="single">MKKTRFCKDRSGLDEIRTSPQKSDSTLATVRKAEPVTSPLDPIRFSSWLRLKRVRAWINRFMNNCKQPRGKRTDGELTSEEINDSENQLIQLAQEIAFPEEIEAVRSGKELPKKIKLHPLKPWLDDDEPHKKFSGEGDIREFLRDFEIYVAVNEWSNEKAGQFLAVFLTDDAKAFYHQQQESVRKSYKELSGALKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L050</accession>
    <name>A0A6S7L050_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="19">ATP-dependent DNA helicase Q4</fullName>
            <ecNumber evidence="17">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="20">DNA 3'-5' helicase RecQ4</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="21">DNA helicase, RecQ-like type 4</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="22">RecQ protein-like 4</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="24" type="ORF">PACLA_8A059465</name>
    </gene>
    <organism evidence="24 25">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="24" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="24">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="24">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="17"/>
    <dbReference type="EMBL" id="CACRXK020013840">
        <property type="protein sequence ID" value="CAB4025819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6020978at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051276">
        <property type="term" value="P:chromosome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18018">
        <property type="entry name" value="DEXHc_RecQ4-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd22289">
        <property type="entry name" value="RecQL4_SLD2_NTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000772">
        <property type="entry name" value="ATP-dependent DNA helicase Q4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.1460:FF:000001">
        <property type="entry name" value="DNA replication regulator Sld2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001084">
        <property type="entry name" value="RecQ like helicase 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021110">
        <property type="entry name" value="DNA_rep_checkpnt_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF108">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE Q4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11719">
        <property type="entry name" value="Drc1-Sld2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 24" id="KW-0347">Helicase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="14" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="25" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="206"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="287"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="355"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="483"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="882"/>
            <end position="920"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="23">
        <location>
            <begin position="1119"/>
            <end position="1173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="23">
        <location>
            <begin position="287"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="23">
        <location>
            <begin position="356"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="23">
        <location>
            <begin position="402"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="23">
        <location>
            <begin position="425"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="23">
        <location>
            <begin position="508"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="23">
        <location>
            <begin position="882"/>
            <end position="891"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="23">
        <location>
            <begin position="903"/>
            <end position="918"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="23">
        <location>
            <begin position="1119"/>
            <end position="1153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="24">
        <location>
            <position position="1377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00049360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00074290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00076756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00078242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="ARBA" id="ARBA00084018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="EMBL" id="CAB4025819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="25">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1377" mass="153638" checksum="A582E5BD920BA9DD" modified="2020-12-02" version="1" fragment="single">MLGEKSRDELKCLKRELKAWESMFERKHDRKPSKDDVNSAPEEIRETYVKYNKLKHGSKDIKKIETQLNDKEEIEDEVFGKGLNKSRTPVSANKSVRIQISPTEYKPIKLCHGQRQKPLANKLKTNFMENSGQDVKMVENKSEATVNNSTISDDLGFSISSAKKDVLNKPGMMLGKSTLTKRMKRRSALASDWLEKNQSELAESSLNGIDPALNRSNQEDGNDSTQGFNDEFDNGNGDGSVNEELPKSNWLNAEKMSTKNLIETDNETGFQGESTVDHKSVKNCSLEESQTTGNVSTKQASERNKYKSSNLVVTDNIDVNNANLLSTTRNTIKSQSMENSCVTKSSSDLVVMHGSIGSQNVDNNSTTKRKRSKAVEASSTSDHLEPSFGDDVERKPRKKRKTSDDTYREMNIEQVENGEMEEGGETGKESEDERTQSEKSGQRNGVKKKSSGLVSENFRALNMKVRRYCRRGNGTNYAAYKRKMWKKKQQANEQADSKKNQWKKKKSNSSGSTRRISSTTTTTCFKCGEDGHWVKDCPRNKPVRSQVPAENWSEPVNAPEDLEINDEQWQATEEKLQYLVSDRLPRSQHLPSQAPPAIEPLYQPVNDQPISTPQEVYDALNKLGFDSFRCGQEEVIMQILCGLSTLVVLSTGAGKSLCYQLPAYMYSRRSPCITLVISPLVSLMEDQVVGLPFGLHGVSLNTNMTKQQRQKAVDQICSGKAAVVLVSPEALVGGNSGVGCLPHPSKLPPIAFACIDEAHCVSEWSHNFRPSYLRVCKVLRERFGVRCFLGLTATATRSTALSVCEHLGIIHRPEAIVRGATIPDNLNLSVSCDLNRDRAILELLQGSRFSDCDSIIIYCTRRDQTEQLSTYLRTCLQKNPMNTSSSITDQNGADEMEKENKEKKRGRKRKSEKSKSGKKSMSWQAECYHAGLSAAQRKKVQKKFMAGELRIVVATVAFGMGLDKADVRAVIHYNMPKSFESYVQEIGRAGRDGLPSHCHVFIDPEGKDVRELRRHAYASTVDRNAIKKLVHQIFPTCDCKTLHANMKEKRDRELALVNTAGSSANGSNEGANQDWFDGDDDIIDHMVEFESHGSKELGINEADIVETDTSDITSKTDVHQTIDGNHSDVKGIVDKVPQDDDDIRMNDATKSDDVTSNDVTKSDHATDSNDVANRDAVTNDDDVIMTDNGDDDVITNDESEVMDHHDTEDSNVGSNRVCGGHEVALPIEKAVQQLDMKEEAIETLLCYLELHAKRWVQILKSVRSTCTLKFYGGPAHLHYVAQRVPMVTAAVAYARKRGQFKRNTSCLTFPILEIVDEMGWDLEPVRRELYGLQWNEGLRLAGETGLSAGHSGIIVEFTDLAFHVRAPGDLSGDEKDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LEB9</accession>
    <name>A0A6S7LEB9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013373</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017213">
        <property type="protein sequence ID" value="CAB4030889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LEB9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16712" checksum="CBA1061951A77F81" modified="2020-12-02" version="1" fragment="single">MFELLENPKESELTNNNIDQELKFQSLTFHSRSRKFTRGLCKYSLNSRIVREMVCGENKTFSMNEMEMLANKSVFINKTGQLDSFKEYLVLKNGKRLTVCKDYWPGNCSYSYIEVKNESDWSIFENGSVYTHVNNKVWLNYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVH5</accession>
    <name>A0A6S7LVH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038575">
        <property type="protein sequence ID" value="CAB4045289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVH5"/>
    <dbReference type="OrthoDB" id="407616at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004175">
        <property type="term" value="F:endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005102">
        <property type="term" value="F:signaling receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00108">
        <property type="entry name" value="KR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.20.10">
        <property type="entry name" value="Plasminogen Kringle 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000001">
        <property type="entry name" value="Kringle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013806">
        <property type="entry name" value="Kringle-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018056">
        <property type="entry name" value="Kringle_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038178">
        <property type="entry name" value="Kringle_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050759">
        <property type="entry name" value="Serine_protease_kringle"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24261:SF7">
        <property type="entry name" value="KRINGLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24261">
        <property type="entry name" value="PLASMINOGEN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00051">
        <property type="entry name" value="Kringle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00018">
        <property type="entry name" value="KRINGLE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00130">
        <property type="entry name" value="KR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57440">
        <property type="entry name" value="Kringle-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00021">
        <property type="entry name" value="KRINGLE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50070">
        <property type="entry name" value="KRINGLE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0420">Kringle</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="89"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="110"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19867" checksum="73250A39FA62E497" modified="2020-12-02" version="1">MRFAGCYYMFPGCDRSTSGFRTKKFCKESCLHFTNECSTFVEALNEIFLQYYPEKKALTSCLEKASRNAGDSPECISYDRKESLKKEDCLYLNGSSYHGNISVTASGISCQSWTEQCPHRHTMNNTYRELNNAENYCRNPQNSGQRPWCFTTDRNKRWEYCDIPKCIPGRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6J5</accession>
    <name>A0A7D9D6J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013990</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000046">
        <property type="protein sequence ID" value="CAB3977431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6J5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10945" checksum="7E629F141104D747" modified="2020-12-02" version="1">MWNFTVRAVMKPDITGIDALSAKSMDLTEQRPIKDLKAEDFFLDSYPDLKELLQNRYDAYLIEALHMVIHELDVTYAEFKEMTESDFDSYVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJ33</accession>
    <name>A0A7D9DJ33_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DZIP3-like HEPN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004764</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000931">
        <property type="protein sequence ID" value="CAB3985849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJ33"/>
    <dbReference type="OrthoDB" id="5987069at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041249">
        <property type="entry name" value="HEPN_DZIP3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46844">
        <property type="entry name" value="SLR5058 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46844:SF1">
        <property type="entry name" value="SLR5058 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18738">
        <property type="entry name" value="HEPN_DZIP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DZIP3-like HEPN" evidence="1">
        <location>
            <begin position="40"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24569" checksum="B16A6ED5B4AE3553" modified="2020-12-02" version="1">MASSSQTLNDQANGGRLSRLLVNKGTQALRAVFDFTYRSSTLTAVLNTNKAILQKLRYKVINPSQWKLLYPSSGPPDSQNFDVTLLTVLLRNICGLTRPASGWDALPPDSDTSVAANIARIKFYRNQVHAHITTTEIAGNEFENLWLKISKALIGLGIPKSELDESKEAPLSLEEAGCIQLLEDWCKSEAEINVDVKEILAIIKEQRMQISRENENVDRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DTR6</accession>
    <name>A0A7D9DTR6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086252</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002191">
        <property type="protein sequence ID" value="CAB3993121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DTR6"/>
    <dbReference type="OrthoDB" id="2403749at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="32767" checksum="1AF9FFC22D221325" modified="2020-12-02" version="1">MDNDIMKEQGLRVIYYNPKTGFQTPETLYLRAISDGLEVTKVQARKWIKEQDTYSRYRQVLNRQKFRQTFVQTLSEQLQMDLVDMTKYDDKNKGYRRILTSIEILSRAVQESLREYPKLVQFDKGTEFYNKEVKSLLNKYNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDFTDNYNSSVNRSIKVRPDSIDETNWTEVWKTLFSHDLGEPLKPKFDVGESVRISKYKSVLVKGYDENFTEELFTVTEVYHGHPNTYSIKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DX02</accession>
    <name>A0A7D9DX02_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Tektin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A069553</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia and flagellar axoneme. Forms filamentous polymers in the walls of ciliary and flagellar microtubules.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
            <location evidence="10">Cytoskeleton</location>
            <location evidence="10">Cilium axoneme</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Flagellum axoneme</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the tektin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002261">
        <property type="protein sequence ID" value="CAB3993437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DX02"/>
    <dbReference type="OrthoDB" id="9886517at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015630">
        <property type="term" value="C:microtubule cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060294">
        <property type="term" value="P:cilium movement involved in cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048256">
        <property type="entry name" value="Tektin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000435">
        <property type="entry name" value="Tektins"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19960">
        <property type="entry name" value="TEKTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19960:SF25">
        <property type="entry name" value="TEKTIN-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03148">
        <property type="entry name" value="Tektin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00511">
        <property type="entry name" value="TEKTIN"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6 10" id="KW-0969">Cilium</keyword>
    <keyword evidence="5 11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="4 10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="428"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="275"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="334"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="432"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00045224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU367040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3993437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="55886" checksum="043C08431D0A258D" modified="2020-12-02" version="1">MTTTYMVSSKFNPAEWHSSNETHYMNAFREVENGKSLRNASDKLAKSIAYDASKMQKHVREKIGHRIKDVASWKAEVEKERSCVISEMEALLQCKAMLEKALAATQHPLTVPKKCLAYRTNRAGIDLVKDTVEKQLFKEVQLIEATQAALKRTLDQVIDQYRRLESVKKRLDKDSLDKHSALRIDNYCHGLNNYSSGLGYHKFAVEMDPKFTTLPEWENFSYDNITRARWERKMSENLRKKVHELLVRTMNELKEMFDAVNLAMNRRVMETSEAKKSLTNHLKRVMDEMAKMKGNIDMLKKSIYDKEKYMQVAQTRLEKRGYRPNMELCRDIPKFRLVDEVRELEAALDSLKRRLQDAIRAYQALEQQKLSLEQDIAVKTTSLEIDRDLCYRMRQGMSWQPFLLSTAPKLKDTSCCRQATPPRLMSRLSHRPVTSRSITTPMSRGGKLEGSIRLHSAALDFTSPPPTRGGLRSSHRVITPMFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E288</accession>
    <name>A0A7D9E288_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043298</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003269">
        <property type="protein sequence ID" value="CAB3998117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E288"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="14242" checksum="56AEC749AEFA24F0" modified="2020-12-02" version="1">MAEIEVMAEVMAKIPEEKKNTVKTVDEQKKKIMKEERLWKSIIEKKSKIMEEAKRIVEGESGTLSHNSDDEWFDDEDEDFDFTNSPGFFEKAWTDGLKERDDMQRGYLDIAQNKESQMDNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8U6</accession>
    <name>A0A7D9E8U6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075619</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004659">
        <property type="protein sequence ID" value="CAB4003548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E8U6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="68" mass="8159" checksum="E8864471FA8286E8" modified="2020-12-02" version="1" fragment="single">MTKRGELSYRERLLALDLLPLTCDREVRDLVYFFKSLFSYIDVNIDNYVSFVSHGRTRLNHTSRYILQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEE6</accession>
    <name>A0A7D9EEE6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Titin-like isoform X4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A041813</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005854">
        <property type="protein sequence ID" value="CAB4007624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="8923679at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00057">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.10:FF:000028">
        <property type="entry name" value="Neuronal cell adhesion molecule"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006585">
        <property type="entry name" value="FTP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039477">
        <property type="entry name" value="ILEI/PANDER_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050964">
        <property type="entry name" value="Striated_Muscle_Regulatory"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13817:SF170">
        <property type="entry name" value="PROTEIN-TYROSINE-PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13817">
        <property type="entry name" value="TITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22633">
        <property type="entry name" value="F5_F8_type_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15711">
        <property type="entry name" value="ILEI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00231">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00607">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="10"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043915981" evidence="7">
        <location>
            <begin position="21"/>
            <end position="1867"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="1578"/>
            <end position="1605"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1614"/>
            <end position="1692"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1620"/>
            <end position="1631"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="1643"/>
            <end position="1669"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4007624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1867" mass="206181" checksum="CC8DCED31A3ABF1F" modified="2020-12-02" version="1">MLFQTLNLIVLIILIKVSLSHQFDKGENLALGKPTLQSSVVEEGISSNAVDGNRHPDYSEKSCIQTDNQIESWWRVDLQDDFYVTSVVITNRRDCCSERLYNFEIKVGDNNIGGGVINARCSPIFQRLLGRGETLEIVCEEPLRGRYVSVIIPTNYGILNFCEVEVYGKKGKFKYDVYMRTWTVRSSETEMVNLTTNVSPDTVVCMVLYYSGERYYKAAVPYLEKLVGQPIKADLQYGESWALLGYKGTQSPIPHWRESVRRKIGQGPSKISKLITLKKAPSGPPSNVKVVYGDGTSIKLTWSRPNDYLTDYDYPFNYSLCISHRFTKTCDLATDNGLRYSFRGLQPLTNYSITIRAQSANMSDASRINVKLVSRLKEDVLYRVYGRPYSTITVAGVVYTFNRYGHNFLILDARTGNVIRQDSFNTFHDRLNSGSKMTAFLTSLPNKVIILMVVYHRGHPYYDDAAASLIAICPHAPSVLNEDESNALICLKGMGFASWMKSKISTYALGPAVLETDILLPEDLFTYPNITKISPSTTSLVVEWLVPKTDKFTGSISKYELCYSGEFITSGCVEIGAASTQWNVTELHPHVEYELKIRAAALLGYGPFSPPKYATTLESAPSGPPTNLRITFVNSTSMIAAWSPPELILQNGIIQNYNVCVRTYTMIARCEDVVLPGSQERYLASGLAPYTVYDVIVSAATSVGYGPSMLVISKTLEAAPSGPPTNLRVTFVNSSSMTVTWTPPKQGLRNGIIQSYKICVRSFKITDQCKDRISTGSQQNYTVSNLAPFTVYDVIISAATSVGYGPSVFVTNRTSEAAPSSSPSSFMVSSLNSTQLNLTWNEPKPEHHNGILTEYRLTLLPEPWSLTSKRTITLPRDHVNYLATDLRPYVNYVIEIRAGTEAGLGPAAVLNARTLMEAPSGPPTFVQVKNVTGTTFQVAWSPPAREKQNGVIISYFLCIRAFGVLYACNDTRIMPGTQSQQLFTELQPDREYLVEIKAATKIGYGPSTFVQKMAGKCDNALLNNRNKIENFQFSASGHVSDGHEAFQARFSNLQIWCEDGAKKDAFIQVDIGGLIRIIAVATRGDISHFDARVTSYKVLYSTNGASWTTVTVSGKEKIQGNTGGEIVKHYLDEPVLTRYIRFEVVTFFGPHQCMRVEIYGCAPAVSPDSVSIISSNATSLVVAWKPSTIADKNGDIQGYVICPKETSLITCQNNKTYAEDDERTKWIEGLKPYTEYVIEIASYNVAGEGSPISVVHRTEQAAPSSGPETIDILGTTTNSIRLYWTKVPEKSRNGIITTYSLCYQEYELEHSCSSFQNIPSGSRNFILSDLQPFKEYLILIRAATVVGWGLPTSIRHWTLSAPPSGGPTTVFIKRLGPTVLEITWSPPEVEKRNGIIVSYRLCAKEVSDSSLCHNNVVVGGTERRLPIAGLKPYTWYAVSVEAGTSGGYGPQTEFHHRTGEWVPSGTPAEISVPTFNETSVTVAWKSPDENEINGILKSYKIEIYEQLDSGYLKMVSSKMVASAILTWTFGSLKEKTEYIIEIKAGTVVGFGPPSVVHQKTSGEADVTYVKKSNKIYLALAKAGIAAGSLSFLAIIGFVVFISLLVTGYVPYTSDSEESDFNSSNSSRGSGTSDDDSDGSKTKTSSRKKKKKQKSSKKNKTSKGKNKTKRISYDESFSESMDDPHDLSVSLPNPEPEEIYGQALLNAYVKSVMDMCSIYGGSIYGTRPENIYGNILRPENIYGNPSVGNIAQPENIYECNNLRPDQSVGNILLPENIYGNPSVRNIGQLENVYGGNNLPPENIYGNPSVGDMIPSENIYGSRSMGNILRPENMYGVMQEEIYGPAVNTLSVHNYPGGVISENLYGTHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EUQ3</accession>
    <name>A0A7D9EUQ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Inositol 1,4,5-trisphosphate receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A015823</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009680">
        <property type="protein sequence ID" value="CAB4017715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EUQ3"/>
    <dbReference type="OrthoDB" id="6017668at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005216">
        <property type="term" value="F:monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006816">
        <property type="term" value="P:calcium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015925">
        <property type="entry name" value="Ryanodine_IP3_receptor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45816">
        <property type="entry name" value="MIR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45816:SF4">
        <property type="entry name" value="RYR_IP3R HOMOLOGY ASSOCIATED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Ion transport" evidence="5">
        <location>
            <begin position="244"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4017715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="587" mass="67454" checksum="1E9EFCB703FD5910" modified="2020-12-02" version="1" fragment="single">LSRHNKELAGLLRPPSPPEGDEEPVGALDYYSRHTAQIEIVRSDRMIEQIVYPVPQICEYLTERSKHHVFKTTERDEHGSKVSDFFSRSDDLFNEMQWQKKLRENKMLFWVSNQMLLWERISMNLAVLINILVALFYPFSGTVRVIDYRLSLLVWIAMFISFALIVIFPRPSGVRTFMFAVIVRLFFSIGLEFTLLLLGIVNLLAKGVFLVGFIGNKGTFQYGAARILTDKDLLFHLCYFGFCVVGLCINELFYSVLLLDIVLREETLINVVRSVTRNGRSIILTALLALILVYLFSIVGFLFLKDDFLVDAEPRLPRIVDSGGPSDDKGVCPVSTSWENRYFPVQDNDNDVAESVKEHACETLALCILTTLNKGLRNGGGIGDVLRPPSLREPMFVGRVVYDMLFFFIVIIIVLNLIFGVIIDTFADLRSEKQNKEEILKNTCFICGLGRAEFVNKVVSFDDHIKTEHNLWHYLYFIVLLRLKKRTDFTGPQSYVHELIKQRNLEWFPRMRTLSLAVDADGESEQNDVKILHEKLDNTTKQVQALSTQLKELREQMSEQRKYKQRHTLLAPQTSLNCTLNGMIPRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EVR4</accession>
    <name>A0A7D9EVR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009699">
        <property type="protein sequence ID" value="CAB4017767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EVR4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="36144" checksum="0183B151B773CB3F" modified="2020-12-02" version="1">MLAQPSPMSAMSIPSLKIPLYQSPSPAHLWQVKQTKTSGVRSVQVSSNTAYPSPSPIIPSPSLAVHSPGKTNLVDEEEQLYFQKKKRLINSAHTETSKKRIKLDGKIATRNKMTNSPPKLTGNVEFKKKRLINILPAETSKKHISVDGRRATRNRITISPPKLTGNVEFKKNWLFDSAHTETSKKSIRLDGRIATRNKMTNFAQILTGNVEFKKNWLINNAHMDTSKKSTRLDGRIATRNKITNLPPKLTGNVEFKTKHATVVADRGIMASGASKMNLPYNSMTVVNDKEVKMALGNRIKIVVGDVAQEKVYSVVQWLSSCFRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EX53</accession>
    <name>A0A7D9EX53_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Actinoporin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A009913</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nematocyst</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Target cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the actinoporin family. Sea anemone subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010955">
        <property type="protein sequence ID" value="CAB4020438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EX53"/>
    <dbReference type="OrthoDB" id="6132998at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042151">
        <property type="term" value="C:nematocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044218">
        <property type="term" value="C:other organism cell membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051715">
        <property type="term" value="P:cytolysis in another organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006812">
        <property type="term" value="P:monoatomic cation transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046931">
        <property type="term" value="P:pore complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.270.20">
        <property type="entry name" value="Cytolysin/lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050677">
        <property type="entry name" value="Actinoporin_PFT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009104">
        <property type="entry name" value="Anemon_actinoporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015926">
        <property type="entry name" value="Cytolysin/lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40388">
        <property type="entry name" value="BRYOPORIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40388:SF1">
        <property type="entry name" value="BRYOPORIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06369">
        <property type="entry name" value="Anemone_cytotox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63724">
        <property type="entry name" value="Cytolysin/lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0204">Cytolysis</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0166">Nematocyst</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1052">Target cell membrane</keyword>
    <keyword evidence="8" id="KW-1053">Target membrane</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4020438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="228" mass="25398" checksum="2D4BE3FD96FEFA1F" modified="2020-12-02" version="1">MAIKIIIVVFMGFCLIQANANFIKSGVKDKLEQDESEINQDIEGNVSKRGLAVVIPLIELGINVLQSVLDALGNIERTIAIGIGNDTPYEWKADGVYFRSGTSDEFLPAYLSSEEGAIFPGRKTEGPVATGVVGVLCYYIPKRRKSLCVMFSVPFDYNLYSNLWDVQMFSGKISPDQQLYEQMYYGSPYSGDNRYHEKDLGHGFIMEHGIMNNAGNARLMINIATKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HBU6</accession>
    <name>A0A7D9HBU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000324">
        <property type="protein sequence ID" value="CAB3980786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HBU6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="69"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11434" checksum="471C8FCFF8F2031A" modified="2020-12-02" version="1">MQFKNAEENEKETRTQENRQELKPSIDTAQRTKHPPIKLNRPIPGLAVDLRPARKAGSYEHSGTRRDLLSPTSSTHTHSPDSLSPRSPLSPVSSDHLDNTSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC88</accession>
    <name>A0A7D9HC88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A039130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000358">
        <property type="protein sequence ID" value="CAB3981159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC88"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="111"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="808" mass="97423" checksum="B231220D6CC243F6" modified="2020-12-02" version="1">MGRGFSFRLLYRVVFFSFCLIFACLYHGGGSEYDRREDKTEPNKLKDEFKGKPLNVNVSLEQDERVPYLTENAKQIDGRKARKKTDLSKMVRKGTAMKTLRSERIQKSPLLPFSTSSPSEVNVQRKESTTISHSNEKEWQNGGSENISPLENQIFHENDLRKIAKTETFASLTTQNLRSRREIDSKSEYTQEDLLMCNESIINIKYDDEYKVRTDLSILYKKTVYDYTQYRVVNGSIKICNSTDNYVRKIWKVRNKRVKAKIHQKSCNKPIRESWLYQKYYTVNKQFTVYFAAMNQYFTRNDYGVEDGKPFTCQEKFRPTSTEYTQEDLLMCNDSNINIKYDDEYKVRTDFSILYKNKVYHYTEYRVLNDGIKICNSTDNYVRNIWKIRNIWKVRNNWVKAKIHQNSCNKPIRESWLYRQHYTVNKQFTVYFAATNQYFTRNYYGVEDGKPYTCKEKFRSISTEYTQEDLLMCNDSIINIKYDDEYKVRTDFSILYKNKVYDYTKYRVMNDSIKICNFTDNYVRNIWKLRNKWVKAKIHQKSCNKPIRESWLYRKYYTVNKQCTVYSAARGQYFTRNNYGVHDGKPFTCQEKFRPKSSEYTQEDLLMCNNSIINIKYDDEYKVRTDFSILYKNKVYDYTEYRILNDVIKICNSTDNYVRNIWKLRNKWVKAKIHQRSCNKPIREYWMKRQYYTVNKQFTVYSGRRGQYFPRNDYGVEDGKPFTCQEKFRPESTEHTLEDLLMCNDSIINIKYDDEYKVWTDFSILYKNKVYDYTEYRVLNDGIKICNSTDNYVRNIWKLRTEYLETTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HDG0</accession>
    <name>A0A7D9HDG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">K+ channel tetramerization domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002921</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000335">
        <property type="protein sequence ID" value="CAB3980903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HDG0"/>
    <dbReference type="OrthoDB" id="41971at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043136">
        <property type="entry name" value="B30.2/SPRY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499:SF136">
        <property type="entry name" value="GH08630P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0407">Ion channel</keyword>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="31927" checksum="656A110EFBE6D322" modified="2020-12-02" version="1">MDAGEVPNDVFIHLNVGGQKLISKRSTLCQVKDSFFASRFSGRWPEDRDKRDDDGAELFDDNPQFFVAIVNYLRAKKYATKENPALPPKVPKDQLDDFENFVEYLRLSDEIIPREKFNQHSPGVTLEEHSRVAVHDPDKAEHRYVLGQNIYREKTHSFRLELEMFKDHFWMFVGIMRNCVVPPNNKSRRWPGSYGWARGQRGQVWKDGSPTIDNALKNKTKQGDTVKLVLDCDAAKLSLHLSTGQQFHIEIPKSQTWRLHVNLLNPNDRLRIINE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HH15</accession>
    <name>A0A7D9HH15_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine- kinase drkD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047796</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000396">
        <property type="protein sequence ID" value="CAB3981507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HH15"/>
    <dbReference type="OrthoDB" id="346907at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051681">
        <property type="entry name" value="Ser/Thr_Kinases-Pseudokinases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="466" mass="52812" checksum="E3990C06926A0D81" modified="2020-12-02" version="1">MRLKLADFGLALLRNLNDLAQDEAQHHRSWCAPECLLDTETMIEVESFMRSDIFSYGLVLHYMLTGSMERREEQKAPEPPQNLGKGPLKDLYDSCLRLGSEERPTAAEIINKKFQVHTTNPYTVTLQTAEFFTFGFLKDTQIVVADSLVDESLVDSCGSRRPQGYPSECLSCVVEIDKDECDQCPELLGSELFQTYCQRHDEWRVAEKIENNANIALKGLTTRREGEDEEQRVVLKFAQATYAHHRAMRDVWEGLDENTKTQFLPCKTSVHPVFSTSFGLHVAVITADQIFLFTRRSMKDGIASPGDFTCGAVESCSVKDYDETRGDKTYVELIKTAARGLNEELGVVLKGKDLDAICLTTVYLKYDKHEWGMCGFVDLSDERIAPERRLTYASIQSRFTGASCKDKFEHELIKGVPFELDKMADFVRENFHNFASSTKLVVVKVMQSFFGVSEVEKIFKAFDSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKZ4</accession>
    <name>A0A7D9HKZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000589">
        <property type="protein sequence ID" value="CAB3983216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKZ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="79" mass="8892" checksum="797928699E31AFDF" modified="2020-12-02" version="1">MKQAQEELSSGEHNIENVDEDGPCINMDIQLVELDNEEDTSSESDCNEETDIDLGEITETNLILKKAEKIKKPLIEDIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HRS6</accession>
    <name>A0A7D9HRS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Synaptojanin-1-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003813</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001896">
        <property type="protein sequence ID" value="CAB3991660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HRS6"/>
    <dbReference type="OrthoDB" id="1925875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098793">
        <property type="term" value="C:presynapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004439">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046856">
        <property type="term" value="P:phosphatidylinositol dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048488">
        <property type="term" value="P:synaptic vesicle endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000095">
        <property type="entry name" value="CRIB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046985">
        <property type="entry name" value="IP5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000300">
        <property type="entry name" value="IPPc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015047">
        <property type="entry name" value="SYNJ1/2_RRM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11200">
        <property type="entry name" value="INOSITOL 5-PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11200:SF257">
        <property type="entry name" value="PHOSPHOINOSITIDE 5-PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08952">
        <property type="entry name" value="DUF1866"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22669">
        <property type="entry name" value="Exo_endo_phos2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01165">
        <property type="entry name" value="DUF1866"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50108">
        <property type="entry name" value="CRIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="92"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="308"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="709"/>
            <end position="872"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="311"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="349"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="366"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="392"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="490"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="510"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="550"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="573"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="614"/>
            <end position="632"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="716"/>
            <end position="733"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="803"/>
            <end position="825"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="863"/>
            <end position="872"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="872" mass="95861" checksum="93B08B140688EBC3" modified="2020-12-02" version="1">MEDVKEGIMQGDFESLQVEDQLTKSRNSNKSFRGFTEGRLTFAPTYKFDPFSDDYDTSEKMRIPAWTDRVLWRRRKPRSKFTESAVDHAVDGGEHGTLVDIDSESEDEEEDIGGESNQRERRKSFYIRDDNVTWSVGKLLYYHSAQLKTSDHRPVVALIEIEIQSLDKEKEADVHDDVMKSMGPADPTVIINSLNNDEEINTEELLSELERIGNTVLVRVIDNELFITFDDGRSALKAMELDNTKIDGVQIAVRLKSESLLSKTDLTVGDFVPMTPSGLSRARSLSEILSDSAGNSASLPVLQPIKIYSQDSDDDDVKDDDVSDDDVRDDDVIDNDSEGVVIEKMKSPPTRPIRPGPPPKRNPQIMEHDPESVDKRPPVKAKPERPKPFSKAGTSPAGSPSNKRRTPPSRPGRPSSLPVEKTASSTTQEGNPIPPARNRVTANNEAGSIATKPSPPQRPGSVTVERNSVDNEAKPLPPKRPSSSTVQKSAVDHREPKPVPPARLKENMEEQTTSAVTSKPTTPPQRPSFTVEKNAIDHETKPVPLARPRSHVEKPAENVEKQTASTLGGKPSRSGSITLETSTVDNQTKPIAPARPPGNVDKQTDDMLSGKSVTPPPRPHNLPHRPPPPSPGKPITKEKELQPQRVKAVSQVKESEGQSLRQRLGSFKLTRKQQREEPPSTSLTISGPFDVKHVTHVDSTTVQSLLQVGGHEASAEMNSGLNLETNDLSSHTSPMGPPVPIGRSDSVNTKPVPVPRRKSEKEASGESRSMVVHKETVMDKTGSLERSPPKLPPRPGNDSMEEETPHPPERVHTMTDHKTPPELPKRPCSTGENIDTTPSNPPAVPARTDLVNTDENCPVAPPRKGRKKIIGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HS92</accession>
    <name>A0A7D9HS92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012636</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001518">
        <property type="protein sequence ID" value="CAB3989604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HS92"/>
    <dbReference type="OrthoDB" id="5958007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF1">
        <property type="entry name" value="TELOMERE LENGTH REGULATION PROTEIN TEL2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="434" mass="49876" checksum="80491BA1502339FF" modified="2020-12-02" version="1" fragment="single">MLLCCIKEGTDAYSKFIKDRLRGKTTYIHSTINRIKFKYSKKTSRLTSKLDIKEETIKVLMYVEYARHCGFTVEELLLHEITSSAFFLVDKDGFLRKSTKSQLGSELLKLCPQINPKEQETTPSTNTYIIDCMALVRKVPLKKLEPPVKTFHDLAVALTAMITNTTSNCEEIHIVFDTYKEDSIQNVERKRRGKCKQMVVLDVISPNQKVPVVLENVWASSVSKMAFQAFYVEWLTTNYQGNKALYLGISPKAWRVSSGRALTFPRDTDVFVCLLYHLSKNWLHEDRIELWLIRNSALHALTGCDTTSKISTKLSALNTVRKPDDASLIINFDCPPPITDNAIELAELFLFKCLKPSTELETFDELRLAAFDSNSLKLDFKKTVCTSTDAWKHIQRNYYQMQLWIQAPFRDASLLMNAESYGFERIDRELVPEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HVW8</accession>
    <name>A0A7D9HVW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002196">
        <property type="protein sequence ID" value="CAB3993148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HVW8"/>
    <dbReference type="OrthoDB" id="1562405at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019441">
        <property type="entry name" value="FMP27/BLTP2/Hobbit_GFWDK_RBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045167">
        <property type="entry name" value="Hobbit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15678">
        <property type="entry name" value="ANTIGEN MLAA-22-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15678:SF6">
        <property type="entry name" value="BRIDGE-LIKE LIPID TRANSFER PROTEIN FAMILY MEMBER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10344">
        <property type="entry name" value="Hobbit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01214">
        <property type="entry name" value="Fmp27_GFWDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="384"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="507"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="850" mass="96724" checksum="339BB70C79C0B813" modified="2020-12-02" version="1" fragment="single">MHDMFTLRDYEQPLFLCELFEISGRLIGAEQAACERAKRTCVVEIPPPWGDQEVSRGMTPLKYFHDLNFDFQKLEMSWGVDIEPAYAMVNIAFEHINKASVDPSVSLPFWDKMRLLLHGRLSMNIKEWQLNWRATRNPYDKSEQLEIEWRNVRFDWTNACFEIFGDFDLFTRTASKYDDCCVLHLPALKFRADLVWHCREEGDANNHYNIRPCAPNKLPQLPPGQVHDSYAAFRSQNLSLNISFEVDAERLKEDDVPTILLYASTFRWFQNFQAAVWRNVSRPIKKGSIFNRIMPKRKPLSRHYRNVGFNLKFPQLSVFYWGSVTKHLGAELNLGTGSLNTVYRVGLSEYKDGLVRRPAATWTIIKLDSEIEDVTCYVTCVEEKEPGNESDEQSAPNQESSGPDKDVFEPKTLEPSKFYLGHVDRLVYKRKELNTFEEQTEIDGTMSDNLEDYTHNLVCHNFRGVWTLTNRKLSFGLVETYTRSQQLKRDLSADALKFAKVDNKTTAVPEASPDVSTRRDSSTRRLSTSQTKLDDLFTKTIGGKMEGGDDADVPGSRPRSTTSDVLLDKLVSESADSSKFYVQTEEGTTDETQSGGYALCNSEDVHEQRWHFEFVNSQVMLKGIENSGCLLVTAGNAEVLNRLHRPTQSGRKLLNKKTWVGHLENMQYFCTVGSNEDITNTDNLWLDSSTIQARRKNTGIDLTDLSSVLGTGDCIGSLVDNMVATNTKLQRIVSRCGCQFYYASFDDELEDGLEAVPASNTPAPSPSSKLRDNQSAWDPVNTFTLKHPVLEICINSAQYALILDIVSNVLLYTEPQKKEVSELEQRMGFYFQLSTPEDLKGTILHAQNTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZG5</accession>
    <name>A0A7D9HZG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A050814</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003048">
        <property type="protein sequence ID" value="CAB3997206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZG5"/>
    <dbReference type="OrthoDB" id="10053436at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002250">
        <property type="term" value="P:adaptive immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050776">
        <property type="term" value="P:regulation of immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009966">
        <property type="term" value="P:regulation of signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.505.10">
        <property type="entry name" value="SH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000980">
        <property type="entry name" value="SH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036860">
        <property type="entry name" value="SH2_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46051:SF1">
        <property type="entry name" value="INOSITOL POLYPHOSPHATE-RELATED PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46051">
        <property type="entry name" value="SH2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00017">
        <property type="entry name" value="SH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00401">
        <property type="entry name" value="SH2DOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00252">
        <property type="entry name" value="SH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55550">
        <property type="entry name" value="SH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50001">
        <property type="entry name" value="SH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1064">Adaptive immunity</keyword>
    <keyword evidence="2" id="KW-0391">Immunity</keyword>
    <keyword evidence="1" id="KW-0399">Innate immunity</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3997206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="16013" checksum="E49AAF6504D99433" modified="2020-12-02" version="1">MSELLWHHGKISKEEAVRRFRQFHPDGSYLMRNSETVMNAFVLSVGFQNNVYHYRILQDTCRRFLFENRIYYSLSEIVEYYGTNKGCLVCTLKHPVLPPLPTGLGEVHEYDEPSYSVMMPGGEFPGDRGYEMSNYNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2Y3</accession>
    <name>A0A7D9I2Y3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Pre-mRNA-splicing factor cwc2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A077272</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RRM CWC2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003744">
        <property type="protein sequence ID" value="CAB4000056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2Y3"/>
    <dbReference type="OrthoDB" id="10251848at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000974">
        <property type="term" value="C:Prp19 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071006">
        <property type="term" value="C:U2-type catalytic step 1 spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071007">
        <property type="term" value="C:U2-type catalytic step 2 spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036002">
        <property type="term" value="F:pre-mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017070">
        <property type="term" value="F:U6 snRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12360">
        <property type="entry name" value="RRM_cwf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00201">
        <property type="entry name" value="WW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000718">
        <property type="entry name" value="Pre-mRNA-splicing factor CWC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039171">
        <property type="entry name" value="Cwc2/Slt11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034181">
        <property type="entry name" value="Cwc2_RRM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032297">
        <property type="entry name" value="Torus"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001202">
        <property type="entry name" value="WW_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036020">
        <property type="entry name" value="WW_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000571">
        <property type="entry name" value="Znf_CCCH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14089:SF2">
        <property type="entry name" value="PRE-MRNA-SPLICING FACTOR CWC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14089">
        <property type="entry name" value="PRE-MRNA-SPLICING FACTOR RBM22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16131">
        <property type="entry name" value="Torus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51045">
        <property type="entry name" value="WW domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01159">
        <property type="entry name" value="WW_DOMAIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50020">
        <property type="entry name" value="WW_DOMAIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50103">
        <property type="entry name" value="ZF_C3H1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="9" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0747">Spliceosome</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="6" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="360"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4000056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="414" mass="48365" checksum="4184E5F112AA2AC5" modified="2020-12-02" version="1">MAGQSYHTNTNYYYGNTVNTMSYGSTFNAAYQGQGPFEERSCWRELYDYQSGYWYYQNLLTNTTQWEKPEGWDSWPTNREEIQTNDDSSHGSGLSIFRQTSNEIEIKNTEYGKREARRQIDPDEAKKIHWRPEGANEYNIWYDKWIGDHWKGTKDEGPAETRCCVSKDAGHTKAKLLDPKRKKTYFCIYFARGCCQHGSECGFYHLVPTDKDAKRIDMVHDVFGRERHKLHSDNMGGVGSFEKDCRTLYVGRLGKHKELENILWKEFGEWGEIEDIRVISKRQIAFVRYKNRVNSEFAKIAMSDQKLDGQEVLNVRWAYDDPNPKVRKQKTEEDRDAVRAAIYAKLDDEEPQPKRLCSEGIIGAYPNTDDQYPDSAAGPQTREQIEQEQVLQQVKQDCSRLDEAFKRLESSRYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBF1</accession>
    <name>A0A7D9IBF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A001919</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005470">
        <property type="protein sequence ID" value="CAB4006298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBF1"/>
    <dbReference type="OrthoDB" id="5969700at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="3">
        <location>
            <begin position="157"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="Helitron helicase-like" evidence="2">
        <location>
            <begin position="426"/>
            <end position="598"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1014"/>
            <end position="1043"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1022"/>
            <end position="1043"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4006298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1111" mass="128337" checksum="7CF5A3B62242993F" modified="2020-12-02" version="1" fragment="single">MQNETDGQRTNRVQKRKQDRATETVDERARILEILRAVFHKASSNENDQKSDEQLSMSVDLATVDISSVLEADKDNESVHEAEGPGVSRNEYLHEGGWQNVDNPLHELEFVQNEMHSFHLDQEHLEHRQCTMCKEAWPTRQNLASEVYICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKALEAVLCLKTNNPFFKNIEIDRDGIQSLPENGIPDELRYVIDENELSVHVENEGPPQDPVMSANASVEELVLGSGSTSFIPMRQRQRKEGAAIQDAVNEVDPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAESLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQHPADANMTMEELKQMVNSMSANQMVNRLQRYVSKVQGTNQYWYQRLQELLALIEQKGCPTFFFTFSAADMHWPDLQRLLQNDEGASRSERAQAVIDNPHLTDWFFMQRLQEFVRHWLNGVLDAEWHWYRFEYQARGSIHCHGCAKLKNVPDIRKLRNKGCVAFLESETTRYEMSPDDFELLCGDVIRQGEDAEKLLIQYVDWLVTTFNEELPDENWRIPDPHPSAVSATTVDNRDNDYHRLVNTVERHTRCSPAYCLKQKRVDLLAECRFGFPKPLQEETELSLELVVGKNTKSVESELHTKRNDQRLNSHNRVMLENWQANVDLQVIVDEKACARYMAKYAAKGEPRSKSASEILKLSVSSLQNDDQVSSAFKKAMIQVAGDRDMAAQETAHMLLSLPLIGCTFSFVTISLDNSRKVNIDAENEGDEVLQKSAQQEYAERTKLKSRYTALSQLNLMQYVSEYTKVRGELSKRANPYIVRTFPKISANPAGPDFGKYCKYQLIKFKPWEGQPSNAWNNEDESDQMFINAYEFFLMTDEFAEENVFRYSDETDRVDDAQCGQTFENDPSDNQDDDDESEVDPDDEEEVDDWMLLCRINQDYGEAGNRMSDNEAVDWFETVRAVPKDLLRESPGWIYSQRKEAEEHGQHFREDDQQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDA4</accession>
    <name>A0A7D9IDA4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004525">
        <property type="protein sequence ID" value="CAB4003053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDA4"/>
    <dbReference type="OrthoDB" id="6016580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="985"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="985" mass="112251" checksum="D7B0CC16FBA53FCB" modified="2020-12-02" version="1" fragment="single">MLGVGLNIVLFCVLSCAFGSDKYCNTCIKSGKWLFVGKTVQPWISSGAISISRNLMPTRSRAGYTKSRVPFYSNCSATFNIEYLRMCGDISPNPGPKSTRTCTECDRVVAKNHRATKCDGCSMWTHIKCGEMPPKQYRQMKLSGNISHTCRSCFEILKEFPFANTSLNSSNGSSDDSASDKQDIASVWADYDNIIEGNPKNVKTGHLNANSIGGFKFFEIKTWLLSGRFDVLVISETKIDASFPDSHFRVDGYRFCRSDRKAGGGGLIIYVRSDICFVRANQLNGLKFVQDLHRAPFHIMAIFDDVDDMFYAFEQLRMAIKEYFLKKSTEPENPREFWNAYRPFLHSKSKQANDIVLKDNGVVISEKGEIAELFNENFLKVADDVGLISERDYGEVKNLLSAINVRKSRGYDMLSPKLIKESAGIIATPIANILNASINQNCYPSAWKKGQLTPLFKKDDEFSKANYRPVTVLPVLNNIYERLLAAQMDEFCTAILSDYISSYRKCFSCETALLRLTEDWRKMRDNGELVASLQIAMDLSKAFDVIQHDLLLAKLKAYGVEERSCALLRDYLSGRQQRVKIGDTVSAWADVRRGVLQGSVLGPTFFNIFINDLFYHVTQAKLNAYADDHQIYHSDIDPVALEKCVCDEVEVANQWYHNNGMIICLLYKAFILPNFDYCSSYLAYYSEKLAMMHKFNNTAPNEIPMNFNYSSCSTKPIRLLLVVSTCSQSCRHLCTSNHAVSRNVTATTTIIRIDCFLTIVDAVTKALKMAVFSNFTDYFNCASNCLIINLCIQPTSRNMIDLELYRMKMLCRVCCSLARFVETNLLIPVHDANGNKFQKLQKVNIRMGANVDWLPCFYKLTFEVEKRVLAITYKAYFQLQNYRTLSVHVSAHVDQLNKVRFIGWIQHDLIKGGVFELKCHSHILKVIHQQQMMTINNFLVQNCKSFRFHCTISLRHFIYKLSLIGYEHAYKFPKKKTIYIITTLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9II49</accession>
    <name>A0A7D9II49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tripartite motif-containing 13</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006433">
        <property type="protein sequence ID" value="CAB4009380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9II49"/>
    <dbReference type="OrthoDB" id="6270329at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006513">
        <property type="term" value="P:protein monoubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd19756">
        <property type="entry name" value="Bbox2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047153">
        <property type="entry name" value="TRIM45/56/19-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027370">
        <property type="entry name" value="Znf-RING_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000315">
        <property type="entry name" value="Znf_B-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462">
        <property type="entry name" value="BONUS, ISOFORM C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462:SF229">
        <property type="entry name" value="TRANSCRIPTION INTERMEDIARY FACTOR 1-BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00643">
        <property type="entry name" value="zf-B_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13445">
        <property type="entry name" value="zf-RING_UBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00336">
        <property type="entry name" value="BBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57845">
        <property type="entry name" value="B-box zinc-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50119">
        <property type="entry name" value="ZF_BBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="42368" checksum="BF76403E45ED7FEE" modified="2020-12-02" version="1">MSEKTNQIISCEVCAEQFTHNEGYVPRVLPCGHTFCESCIEKLKTIKRHKQDHGRRLVTFDYSVSCPRCMNETVLNKCSSTLPKNYSYLDLIEDVLEKQKDICPHHPDYVLDMFCHDDAEAICLNCAIYGQHKTHSFSRLSEFCDHQKTSLKYQLNCAESLIRDCNSLREEVEAKKEKLAAKFDKMRDHITSILYSIKCEVKKTLDEKLESVLNALERWSKTQMTLLDENLIQLNVHELEVLKDKANSLLENASECEIAKETQLPNDIQASLEDVQTRKLYTGHNYELKIDSWEHILETMKDLVNAWNCQVKEKETLSTEVIPSILEKHSPSIESSVCALFSENEAVANEIPDCPFEGIDFTCENPEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IIW8</accession>
    <name>A0A7D9IIW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062463</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007171">
        <property type="protein sequence ID" value="CAB4011502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IIW8"/>
    <dbReference type="OrthoDB" id="5984216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="130"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="158"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="212"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="30495" checksum="1305028E54A6880E" modified="2020-12-02" version="1">MKHIFPDEDQSGDEAEYNVGDIVSAVWLPNGQFYDAKVVQSGSDRHELMKERMRLEKARKGGATKGTGKGINRKEQQPEQDKRSEQKAKNKKTVKQYPKRERKGREKKEEDEQRQLAIIEAKKKQAASRWASSPTLSNSEHAHPDFTPEPIRRPILSPIQTPVSQANRQIDDTRNRSALSSSSTQQEPQSFIVHSPTPLPATKKRCAQSETISDDDDDKQESDEEDEQETISMPKVVGDCCKEGQQEIEALRKRLTKTHKRLSIACKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ILB2</accession>
    <name>A0A7D9ILB2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005817</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006800">
        <property type="protein sequence ID" value="CAB4010479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ILB2"/>
    <dbReference type="OrthoDB" id="7382669at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="10185" checksum="28165C08B9D1B904" modified="2020-12-02" version="1" fragment="single">EGETLNEVEKRANEDLKNVRNWLSANKHNLNIAKTEYVLIGSQYRVNGLDVQPSINIDKQSVKRVKHTKVLGVQIDEHLNWGKHIESIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRB1</accession>
    <name>A0A7D9IRB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024878</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008673">
        <property type="protein sequence ID" value="CAB4015328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRB1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF8">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="20811" checksum="A8B8BD4E38E7A5FD" modified="2020-12-02" version="1">MVVVGDLFQLEPAMHRYRFKNLGNSEYTVLAPNKWQDNFNMFELEEIMRQRESKVFAEILNRLREGKHAEDDILKLKERLIKQNSIQYPMDVSRVTTIEGLFITDPCEDKIAVNSHVTAEMEYLRNEHTLKLSVTPIYKTDQISFKLCYLNAWSLHKHMILILQILTSMFFLKLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IYR5</accession>
    <name>A0A7D9IYR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071023</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009151">
        <property type="protein sequence ID" value="CAB4016524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IYR5"/>
    <dbReference type="OrthoDB" id="2506088at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31912">
        <property type="entry name" value="IP13529P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31912:SF34">
        <property type="entry name" value="NOTOCHORD-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="863" mass="98630" checksum="743EB575E4512597" modified="2020-12-02" version="1">MKRVRSVVESCHLCDVHFESNNGYIKHCETRNHKHKLLVKNAATMVIDEEIDNSFPTKTVPEIPPFFPFTSQGDQQEMMATPLIFEDDSQDNPSSPIQHEMDAEDNVNEKSNLFYPFPDEKFFLLYCYSHGIMRPKSRADLDFLWMMLDRFGVNPPLLDSVLSFKIDGLEDMLPLNKAYGEGHPFYWIPPSKIIQMQLATPTIAQQIARYPEKTQNIIEEMYQGRKWHICEQFHTTSATVHNKTIFVDDVIQYTSRQGNRAYGKVQNFFAQKVDDCLKSMCEVLKVNVHPVHPDHLVITDEIEDLDINDINGITTAPLSFKEIDGQIYHLTPEEIDFHCTPHPSKAAAGELESGMMMYDVLSGNEIFVQCPILCVACDNPRASEICHHLGSTAKHFCRDCDATKENATEIGNARTDEAIKNTIVLLKMQDLKMQKKLLRRETGVTECGGQFDELKTFDATEQTPIEILHTILLGSEKYLLGKTMKTLSAANKMKIKARIEAFDFSAFPQKIASSITRMHGSLVGRDCKVWAKVAVFLLMDIVSDDELEVWYNLSDIFAIAYNPCVNRDDREKMDMAISHFLETVENVHPEFLRKPKIHMLLHLPDDIFNFGPAIGFATERFEALNSIIRQINVFSNRQACSRDIGKKFVQHQIQKFVLNGGCWGVDYRKCASQQLQHLAKSPKLAKFMYQDDPKTNSEKEIYQPGSLRLGKYTNGRLQKLHIDAVFSTPAIEEHLSNINCFGEFDGAVKLLSSDGNKNWVQVTSYCMQHDETGQVQLGRFNCPVLEKTNRKEIIPSTSVEQRVNVVHDCSNQCKFEVSGKDMVEEREVVSHETMTYQHDLTNNRYLLNRFFLGGSTMRFVFNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZU7</accession>
    <name>A0A7D9IZU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037153</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009445">
        <property type="protein sequence ID" value="CAB4017206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZU7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="23853" checksum="03EDDA4A352F805F" modified="2020-12-02" version="1" fragment="single">YFTAHDDLNSMLSYSCVRVRRIIRVRIRCRLPCCVVHKVLVDLHFLRLFLNQYYCSRSRKLKPYYLISSPGLAELGLKVLILGKEGPLRVPRGCPPYKFRIYSCRIVQFSNKLLVLFLTAVPHEQAYAPPPPSWDPCLFTDEWQVQYTPTRTPTYKQVERMCKRVNYEDMMFIVEAIGNVPTSEAEAKHAIKKKELRTIRKKPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J9R5</accession>
    <name>A0A7D9J9R5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012025</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013486">
        <property type="protein sequence ID" value="CAB4025216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J9R5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19094" checksum="74ECBC6CFF0FC844" modified="2020-12-02" version="1">MDCSIQQFGGCFQHLACYHIDAKAMSEEGELAADGLPICMQKLKFIALCIVLKKCFALSRSVSEYIQHENMDLVSVVSGVQSLKDFLSSFLNEEKMNQFLKEAQKYCTDQGLVVDNFDQVDQQHPNRPKHWRTIPSYFINGTFCLDQDYRAMQEKIPGNDSPRDLVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMX7</accession>
    <name>A0A7D9JMX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018332">
        <property type="protein sequence ID" value="CAB4032351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMX7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="26506" checksum="07073B85964B867E" modified="2020-12-02" version="1">MGHTVTAKVLLDCGASAREQFFLDTISPIEIAKVKKDELMIELIEQKIREEEEIINHMKSNFNKPISNESTDMETSSTSKPSNVARKLNINVGDQKNTVLVQGCANRCPDVYGCHTPGGGDFHCRGYVNECIARIAGPGGFWHVVENIMKRPTVNPSSFKSKFKDNNYNNNEEALLDYDDGLSIAMIKSFRKSPCFPDASELDQCLKDSKSHNKILIDRFKVWVKQQEEQDAIFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JU47</accession>
    <name>A0A7D9JU47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020742">
        <property type="protein sequence ID" value="CAB4035129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JU47"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14036" checksum="2EBEC21FA8BB2293" modified="2020-12-02" version="1" fragment="single">IPGKKTCPNCRKEHTSNLEAASNKKDQQFVDESDSHMGNETDVETMSSGSNEEMSLKHDLDTSFEEMGLSQVKLRGVASHSKVTLGKRKLQQFHNKLKDQETTIQKRVAKVIDVMSEDLELSKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JUY4</accession>
    <name>A0A7D9JUY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069673</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022493">
        <property type="protein sequence ID" value="CAB4036864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JUY4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="25890" checksum="A24CAED09383A646" modified="2020-12-02" version="1">MQKRFRLTCPLCGRPDLKNISTHLLQVHGLQSKERKPYLKQAQVSSWQPYIDKSPYMNSEKQGENFFEDIQEQSTLITSTPFKQSNLLKIDEELVWKGPYESLKLFVKSDLGIDGQWKFTGGEVKKFTSKSYTLKWHGKTKQKLVVIQDDENESLQEKLVKSATLGNFKGHYVGQRSETIGNKNTLEGVQKSTLLSNDDKDKDKNKAENQTVAVNFPTEVPLAEIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K570</accession>
    <name>A0A7D9K570_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cyclin-C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A006998</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the cyclin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028575">
        <property type="protein sequence ID" value="CAB4041598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K570"/>
    <dbReference type="OrthoDB" id="10266018at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016538">
        <property type="term" value="F:cyclin-dependent protein serine/threonine kinase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20513">
        <property type="entry name" value="CYCLIN_CCNC_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013763">
        <property type="entry name" value="Cyclin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043198">
        <property type="entry name" value="Cyclin/Ssn8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006671">
        <property type="entry name" value="Cyclin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10026">
        <property type="entry name" value="CYCLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00134">
        <property type="entry name" value="Cyclin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00385">
        <property type="entry name" value="CYCLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0195">Cyclin</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclin-like" evidence="3">
        <location>
            <begin position="48"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4041598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18533" checksum="F5C4BEA52CCFF716" modified="2020-12-02" version="1" fragment="single">MAANFWLSTHYKYWLLTKEELVISAGRQEDLKYLTAEEYQKVHILYANFIQALGEHLKHRQQVIAAATHYFKRFYSKNSLKNIDPLLLAPTCLYLASKVEENGVISNNRLIQTCATVVKNKFMAVFNCEYPYRINQVCFISVSCAVCGWLVSENELPEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K774</accession>
    <name>A0A7D9K774_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029368</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029008">
        <property type="protein sequence ID" value="CAB4041835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K774"/>
    <dbReference type="OrthoDB" id="6620150at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="1">
        <location>
            <begin position="491"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="586" mass="67838" checksum="028D0035ECEC1A31" modified="2020-12-02" version="1" fragment="single">FDRKLKPSNAVGNPEVHGFSDGGEQAFGGVIFLRWELDDGSYRCVAVMVKPFVAPLKKKSIPRLELLGCLALSRMYDTCRKALEFVNMKDFKRIFWIDSTTVLSWVRTPPRQFKPFVSSRVAEIQETIGTEDFRYVRSKSNPADGLTRGIEPAELANWLAGPSFLKFPEAQWPEFHEDLRLSNSVCQETMKEKKSSFSSNCNKEVNEVNVCLATEEKKENPILCHLMAACSSFSKVRRTLAYILRFTQNARKINMKKGTITAQELQISEKYLFKLCQDSLDLSRFEEKLLPRTDQDGLQRAHGRLEEIRSLSEEMRNPIILPRNHPLVKLLLQHLHDKRRHCGYKSLMHEARKRFWIIGLRSYLNEIMKNWDNARIQSVLTEEFSCDFKWLWNVPHASHQNGVVESLIKSVRQAFNVTCKSQAFTAEQWSTFLAEISYVINSGPLYPSSDGVWESPPVTPNDILLGQHNSPPQPTPEDRINPRDLLRCTQNRIVDFWKCWLKHFAPNLLPRNKWFRKRDNVQVGDLVLELDPKHKRCQWKMALITEVHPGSDGLVRKVRMKTQTGEYDRPIHKLCLIATREELDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAE2</accession>
    <name>A0A7D9KAE2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014862</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031730">
        <property type="protein sequence ID" value="CAB4043186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAE2"/>
    <dbReference type="OrthoDB" id="8616706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="179"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="182"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="315" mass="35154" checksum="21357015CB34F3CB" modified="2020-12-02" version="1" fragment="single">WRGRHVRRVQPPAPDYDRQDGFHYSVPTQITGNMSVNCKREGDDYNPRKNLEKLLASCGTPSLKVEESVSDDGSVVAKVTDTNNTLGKALEQVDEFVTKYTGPDLESVVVQEIRRKTGMRVKSEVSRMLNADVKAAEKAKLFLDFDWDKLIRENTLQKLYVSQLDLYLKHAGYTDSDLHVKGTNSKPAQTENTTSVRQTQSATCHVSLPPISPANANPTANVLINVPPWGGSVNIPLYGIRTLINTCPIDNFLVILYSQHKTNPAFGLELTQSTEAYASVLMKVFDSFDNGNFGEGKFWWLQQFGGLLISVTMHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2V4</accession>
    <name>A0A7D9L2V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012961">
        <property type="protein sequence ID" value="CAB4024317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2V4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="131"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17157" checksum="B794F62A518B4249" modified="2020-12-02" version="1" fragment="single">LASASPATGSACETWNNAAQASCIAKPSRKYMRKQELASARPATGSVRGTFNNAAQASRIAKPSQKYMRKQESTRAKLAAIRAKSAALEAKAVFLKRKQGRLRIAAEELELEQQVAEVRVKEQVYEKELNNCTNNMETTTPLTPNAEPFESSGLNVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L5U8</accession>
    <name>A0A7D9L5U8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015946</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014127">
        <property type="protein sequence ID" value="CAB4026306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L5U8"/>
    <dbReference type="OrthoDB" id="5969539at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="131"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18058" checksum="EC63FDC8E54D5F59" modified="2020-12-02" version="1">MYQFLLNYRSTPHSITTVPPATALFGRSIRNKLPSVTKTLPDMKYINETIDTADQSAKCKRNEYADKRRHARIPQLAVGDCVLVRQEKQNKLTPHFDPNPYTITAVKGTMITATRADHCITRNSSHFKLFTGGATNQGETSDNKVEGRNENAREREKCSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LAY5</accession>
    <name>A0A7D9LAY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A068879</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014442">
        <property type="protein sequence ID" value="CAB4026843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LAY5"/>
    <dbReference type="OrthoDB" id="5953554at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031037">
        <property type="term" value="P:myosin II filament disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903013">
        <property type="term" value="P:response to differentiation-inducing factor 1"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04515">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992:SF2">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4026843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="28253" checksum="BB3E77C6D142424B" modified="2020-12-02" version="1">MMKLGKIVDSRKTTVVHMYTFDIDLMTWSKVAQTVEFLVEANPLGQGGFRSAYKATTHNAEFKKCSWVIKKYLPDAVETIQATNHSLEDHNKKVVQMHMLARNFALQLKQEILKDAGKAEQYGPHLKYRKIFLGKTDEGESLTVEEFVSGEFVKYINNNGIPCVSGNNVIGQKAQCLSHFSYERSGTKLMVVDIQGSSYQLYDPEIATSSLYDDSQFLFCTGNLAHIAIENFISKHKCTTFCTLAGLSPLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LF87</accession>
    <name>A0A7D9LF87_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Scavenger receptor cysteine-rich type 1 M130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A061029</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016355">
        <property type="protein sequence ID" value="CAB4029708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LF87"/>
    <dbReference type="OrthoDB" id="1731983at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="2">
        <location>
            <begin position="78"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4029708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19913" checksum="1BF16747759B020A" modified="2020-12-02" version="1" fragment="single">MQSKETNTNDNETDADNENNKRQQRDSATQTVKKDHNSHKKPKDKPAYEQRAGSETGHRLNVAIIGDSMVKHLNPSKLRKGTKHNINVQTFSGANVADMRYYVKPAISRSPDYLLLHVGTNDLKQQTPQQIAGSISTLCQEIVKESPNTKIVLSKVITRSDDSSLDSKIKELNCKLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LKA1</accession>
    <name>A0A7D9LKA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079643</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018442">
        <property type="protein sequence ID" value="CAB4032489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LKA1"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="29237" checksum="C23B1ED87F9923AA" modified="2020-12-02" version="1" fragment="single">VCNKVKININAVPIKFQIDSGADVNIIDEDTFVTLKGKVTLKKSNAKLFAYNSSSPLSLVGKFTAAIATKKRYDVADFYVIKGSRSSGCLLGSTSAVNLGILHIVNQLKSKVGTTSKATEVSAGAVHAKSKQSNPATPLKGMLGKLVASYNDIFQGIGKLKGVKVTLHIDETVKPVAQKHRRVPFHLRDKVEAELSRLEEAGIIETVDSATDWISPIVIAPKKDSNEIRMCVDMVEPNRAIKRTRHVIPTVEELRHRNPESSRTQADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LLQ9</accession>
    <name>A0A7D9LLQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Four and a half LIM domains 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A003396</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020382">
        <property type="protein sequence ID" value="CAB4034744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LLQ9"/>
    <dbReference type="OrthoDB" id="274660at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030018">
        <property type="term" value="C:Z disc"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09345">
        <property type="entry name" value="LIM2_FHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.110.10:FF:000005">
        <property type="entry name" value="Testin isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.110.10">
        <property type="entry name" value="Cysteine Rich Protein"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010442">
        <property type="entry name" value="PET_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001781">
        <property type="entry name" value="Znf_LIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24205">
        <property type="entry name" value="FOUR AND A HALF LIM DOMAINS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24205:SF4">
        <property type="entry name" value="PROTEIN ESPINAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00412">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06297">
        <property type="entry name" value="PET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00132">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00478">
        <property type="entry name" value="LIM_DOMAIN_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50023">
        <property type="entry name" value="LIM_DOMAIN_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51303">
        <property type="entry name" value="PET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0440">LIM domain</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4034744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="496" mass="56330" checksum="52EC1371ECD513C6" modified="2020-12-02" version="1" fragment="single">RNCSSCNCDTYHHAAMYNPYNNPIDRMCVEEDTLSAIDEARDKGYAWVPRGLSDLEVEQYMMFLPTSKVPRLGSDGLTYRAQQLTFQLPLHDFSANYTKFLPADQKEYFDSAVETAINESLGRGVVNPSISHERDCNECQNEIGDGSMAVFAESAGSSVAWHPQCFCCHKCKELLVDMIHFFSNGNVYCGRHYAELDGHRCSGCDELIFVTEYSHAMDKDWHEDHFTCVNCEKPLKREKFVSVEGRPCCTQCYNKGVASVCDECGQSIGPGSKDIIVRDRHWHENCFVCSSCSKPLLNEGFTFQGEDLVCHKCRGINPSKNCAECKKELQPGEKKVGYQNATYHEGCFTCSRCNDPIGSEQFVNKEDKRYCQPCFNKFVAKVCFKCDEVIKTTSVTYEGNSFHSDCFVCAECGKPLAGKAFCRMEDERVCHDCYLSNHAKTCAGCLKSIEGQERYIVYDNEHYHRQCFTCDNCKKPMAGEKFRLRNETERICMECA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNS7</accession>
    <name>A0A7D9LNS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Prolow-density lipo receptor-related 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A055647</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021680">
        <property type="protein sequence ID" value="CAB4036077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNS7"/>
    <dbReference type="OrthoDB" id="5965721at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016324">
        <property type="term" value="C:apical plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042562">
        <property type="term" value="F:hormone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006898">
        <property type="term" value="P:receptor-mediated endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00112">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000009">
        <property type="entry name" value="Low-density lipoprotein receptor isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.120.10.30:FF:000241">
        <property type="entry name" value="Low-density lipoprotein receptor-related protein 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.400.10">
        <property type="entry name" value="Low-density Lipoprotein Receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036055">
        <property type="entry name" value="LDL_receptor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051221">
        <property type="entry name" value="LDLR-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023415">
        <property type="entry name" value="LDLR_class-A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000033">
        <property type="entry name" value="LDLR_classB_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002172">
        <property type="entry name" value="LDrepeatLR_classA_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22722">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22722:SF14">
        <property type="entry name" value="MEGALIN, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14670">
        <property type="entry name" value="FXa_inhibition"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00057">
        <property type="entry name" value="Ldl_recept_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00058">
        <property type="entry name" value="Ldl_recept_b"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00192">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00135">
        <property type="entry name" value="LY"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57424">
        <property type="entry name" value="LDL receptor-like module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01209">
        <property type="entry name" value="LDLRA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50068">
        <property type="entry name" value="LDLRA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51120">
        <property type="entry name" value="LDLRB"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-0254">Endocytosis</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="repeat" description="LDL-receptor class B" evidence="13">
        <location>
            <begin position="173"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="repeat" description="LDL-receptor class B" evidence="13">
        <location>
            <begin position="216"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="repeat" description="LDL-receptor class B" evidence="13">
        <location>
            <begin position="259"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="repeat" description="LDL-receptor class B" evidence="13">
        <location>
            <begin position="303"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4036077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="392" mass="44367" checksum="B4FAC2D613913264" modified="2020-12-02" version="1" fragment="single">PETCAPDQFSCPNSTVCLSRSKLCDTVADCPGAEDEAPRCIYQQCSTVNGGCSHNCSNSPQGSLCSCPQGLKLDVDNRTCIDKDECALPWSCSQKCVNAEKRYYCLCADGYSPQADKSCRANTATDSAPFILYSNRVSIRKIQMRGKGGRVRYSEIIRGLRNAIGVDFDWQERRMYWTDVLTDKIQRAKFDGSQIETVISGGLISAEGIAVDWVGRNLYWLDMRADKIEVSKLNGTQRSVLINTDIDSPRAIQVDPTEGYIFWTDWGSRPRIEKAFMDGTNRTVIVNTKLVWPNGMTLDYPTKRIYWVDAKLHHLEFCDYDGKNRYPVLTGTSKLQHPFSSSLFEDQIYWTDWVGHAIRYTYKYPGGEIVELHNSSSRLMDLHVVHPVKQPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LXR7</accession>
    <name>A0A7D9LXR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026865">
        <property type="protein sequence ID" value="CAB4040494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LXR7"/>
    <dbReference type="OrthoDB" id="6109899at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF5">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="403"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="54119" checksum="AF245C1417100EE2" modified="2020-12-02" version="1">MASEVRHLIEEQIDRTGMYSMLIDECKDNAGHEELSTCFRFVNDEGRIEERYYDLVRLKETDETIVNEGVLPTSKKLSLSATLLALGADGASVMSGCYEGVAAKLKRYYPWLIYVHCAAHRLNLIVAAYFRTVNEACSVINVYKALHIIFNVAGNREIFEAVQKELYPKQPIMAASSLTEVRWACKFEGVNTMVKRLKAILVSLQKIGASNSNQADSAAGLYHKILSGKFVISLCFLHQLLSIMHGLSKAMQETNVKWLNIANEMVAVKKLLVEIETNDIIESAKQLCATVNITLDYKEPVHVSRQDSTESACPREFCERLRAASVPMLLQELERRFSGENTEVLAALEALDASKSTYLDYATLSSLVAKFGDCLHIDSTLLKTECERAKILIAAGKNIDPELYPNLSKVIAILKTLPVGTATVERSFSAMNRILSWARNSLDSSLASDFMLLSMNKDLLKRINLDKVLDRWVNQKSRIVQFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FEL2</accession>
    <name>A0A6S7FEL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Creatine kinase B-type-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A015525</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6 8">Belongs to the ATP:guanido phosphotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000072">
        <property type="protein sequence ID" value="CAB3977814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FEL2"/>
    <dbReference type="OrthoDB" id="430219at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004111">
        <property type="term" value="F:creatine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046314">
        <property type="term" value="P:phosphocreatine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00716">
        <property type="entry name" value="creatine_kinase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.135.10:FF:000001">
        <property type="entry name" value="Creatine kinase M-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.590.10:FF:000002">
        <property type="entry name" value="Creatine kinase S-type, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.135.10">
        <property type="entry name" value="ATP:guanido phosphotransferase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.590.10">
        <property type="entry name" value="Glutamine synthetase/guanido kinase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000749">
        <property type="entry name" value="ATP-guanido_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022415">
        <property type="entry name" value="ATP-guanido_PTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022414">
        <property type="entry name" value="ATP-guanido_PTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022413">
        <property type="entry name" value="ATP-guanido_PTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036802">
        <property type="entry name" value="ATP-guanido_PTrfase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11547">
        <property type="entry name" value="ARGININE OR CREATINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11547:SF57">
        <property type="entry name" value="PHOSPHAGEN KINASE C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00217">
        <property type="entry name" value="ATP-gua_Ptrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02807">
        <property type="entry name" value="ATP-gua_PtransN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="Glutamine synthetase/guanido kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48034">
        <property type="entry name" value="Guanido kinase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00112">
        <property type="entry name" value="PHOSPHAGEN_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51510">
        <property type="entry name" value="PHOSPHAGEN_KINASE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51509">
        <property type="entry name" value="PHOSPHAGEN_KINASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7 8" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="127"/>
            <end position="131"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="291"/>
            <end position="295"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="319"/>
            <end position="324"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3977814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="379" mass="42643" checksum="B2E11C817361734C" modified="2020-12-02" version="1" fragment="single">GHNGICSTTKKSSTPTLNNYPDIRQHNNLMAKHLTPKLYDKLESKSTSSGFTLDQAIQTGVDNPGHPFISTVGIVAGDEESYQTFADLFDPIIEERHNGFKKTDTHKTDLDHTKLRGGTLDDKYVLSSRVRTGRSIRGYSLPPHCSRGERREVERIVNDALEGLKGELSGHYYPLNGMTEADQNQLIDDHFLFDKPVSPLLTCAGMARDWPDARGIFHNKNKNFLVWINEEDHTRLISMEKGGNMKKVFQRFCEGLNEVERLIKKEGFEYMWTPHLGYILTCPSNLGTGLRAGVHVKLPNLSKDKRFDQLLENLKLQKRGTGGVDTAAVGSTFDISNADRLGFSEVELVQLVVDGVNHLIKIEKRLEKNQKIDDLIPCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FN11</accession>
    <name>A0A6S7FN11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000039">
        <property type="protein sequence ID" value="CAB3977266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FN11"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="432"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="519" mass="58549" checksum="A3A138EA4907664D" modified="2020-12-02" version="1">MKRTKQEAEPIEEHDSGFVGPMTLFDTFPHNDTFAETRSLELLPNPLTDNAEIYTFMHNRQDYGVIDMVDAKISADIKIAVAGTGAAPAGDRNIAVNIAPLRYGWKTKAVYLNNQLITPQSSKENELEYIHDFLTTVPSEYKDDQDITLMIRDTPGAASDDPTNLHRNANATGSVNLGARARYVLVNTDVVHECRDKCDLLGRVKRYVPTSFDIKLVLTKLDKTKLLYGTAAHCALVELRLNNLKLSMPILKPNAQLSSAINDLMIQKGEECRYYKITHRYLAIPIPANSRHIVHKDLFNGARPTRLITKIISQDRYNGSHILAPYKAGFPNITRFAVSINEAEIPPVITSATDAYINLRQVLDRRYSEMPCNFADYKSDFGMIVTDLSPNRDGYSQVLPNATSGNISIKIDFRNDTAAAQQLFIMKCCRKRKRRSKKQKGVKKRSQKGGWNHKKWEKTTLKLAQIGSGPRKQRGGGDFWKTFGKVANDTRPRKRDFYNQKGGFGYMDPQKWAKDIAGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUV4</accession>
    <name>A0A6S7FUV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070930</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000098">
        <property type="protein sequence ID" value="CAB3978240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUV4"/>
    <dbReference type="OrthoDB" id="438641at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19959:SF119">
        <property type="entry name" value="FUNGAL LIPASE-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19959">
        <property type="entry name" value="KINESIN LIGHT CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13374">
        <property type="entry name" value="TPR_10"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="288" mass="32738" checksum="595F378B3F32D409" modified="2020-12-02" version="1">MEQSTDAPIFGDFDEDILVHFLSTSNDIHTRCHKFCFKFHQEGKIDVNLLRNPSFRSSKATLFGHLYFRLQHFPKALEWFESVPKNSADEFDSLCGQGSIYLEYGEYVKSVECFEKALEIYYQNEQPLDITLLACVNNLAMALRNMGQYKKAGVKMEEAIEKHHQAYGEDSETVILSSLMLNLGIGYASDDPRSAIGTYEVVEGMHNRLMDVPDQHAIGLSLNMACSLSELNQLERSLEYMKRALQLGHQVYGKNNQSSKLAQIYKTAGTVYKNCNQNMRLCLGTNEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G064</accession>
    <name>A0A6S7G064_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050014</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000973">
        <property type="protein sequence ID" value="CAB3986164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G064"/>
    <dbReference type="OrthoDB" id="10048910at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23560" checksum="BCF4C252FE3939DC" modified="2020-12-02" version="1">MQSSKDGRPWQAYISSSRKGFKGIRRIAECKVSHVCNNIQCPYMQQFKTFNTVQFESSGGKRVCSCCGYAADHTPCEARKMWEFENGDYATTVIIYHEGTHSCTAVRPKRSADEYVKSVLKENKHMTPGQLPIHIIIKMIDDGSDWSEITNKAREFTDVETLSKLKSAMKKQMNPHGHSFDAVTKLREKTIEKDRFYLYCLIIEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5A1</accession>
    <name>A0A6S7G5A1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003383</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001095">
        <property type="protein sequence ID" value="CAB3986935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5A1"/>
    <dbReference type="OrthoDB" id="6155112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="41489" checksum="8A2615AF44686D44" modified="2020-12-02" version="1">MQEQMFSTLGDQSVVVAGDGQMDSPGFCAKNCVYTLMHEELNYVLHIELVDVRHSQLKSAVMERVGCERALDFLMQKLKVDELVTDASSQLIKLLDKRYEKVFHQLDIWHKSNKLDKKLLKACKKRKNEVLKAWIAPIRNHFWHCVKNCGGNLMKLKTEWINVLKHVTNVHTWYNGQCSHGPLNDVGERQWINKDSAAMQALRDIVLDKKFLKTLPFYTRFRHTGKLEAYHSHRLMYAPKRFGFKYEGLFARSLLAAIDHNHHLHRKQARNAKGELVFSRRWSKRAKRWKVVIVKEKKTYSYLPVLCANLLKEASKEFMKKIKPVSSEQNPKKVAPTIASLPAPSTSELVKEHVSRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCU8</accession>
    <name>A0A6S7GCU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001117">
        <property type="protein sequence ID" value="CAB3987082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCU8"/>
    <dbReference type="OrthoDB" id="6597828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF5">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="109"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="897" mass="101879" checksum="50C35621693D1637" modified="2020-12-02" version="1">MPYANKRKANIEKLLKQEASKCKKVSDFFTKNENARTSSSTSCDTNVEKESEQLLNMAPIEVESEVQGTAATGGTDQGEPRKDNELNEVDFDIRNSDREGNVQFVHTRAPSNNIPSNTTPSTLSSTSSANINSITLVTTSDVGLPISTANTSSTQMTTETTTEYYRGYPLNLKALLGKFGDGVLSQYYERSRVSTQNRQKARVFVKCCICGEFEEEAKRFSANGRVYMAQGVRCDGKKKIQDVIDHLLGPSHRAAQEKKQLSKLWNAKDKRHPFINLATKSDPTVLKTLTEMAVKVYNDSKSLTLAAWSWPGRSLANLHAQQQFRSLTDSDNVQSFTPFKPSGEELHYRDPMHYAEMLEIIGDTERKHLKEELQNCICFAAQMDGSVDARQQDKKFIFVRFNTPEDPLSIKTRFASARESTKRGAEGLCSAMTNCFDDMGLSKECLQSKFVGMSTDGESANTGKDSGLWARVENYVGRSTRNIWCACHRSDLAMEDVMRLVPELKIWLSNVTGVATYYRTSGLKTKELKTIKPDMRSFPPHHEVRFAQHLVQLCGAILFNLDGCLKHWQKICDAPREYNTKEVSSAKGFLKLWQPTGVQAWLMVDTCCIFRYIEKEAQKPGIIIPDILKYRDTALQKLDIMQTEPYPGEQEELLTKKIAELHPENDEAVDNTPRRTHNTNVTTFRRGKQPIRQEVIDSSRNFLQTRLNEEQTEIVTTIINLTSAKRAIEFINIALPQLESCGISNKQAFIDAVLENFTEMLSDTHIPARECVRLYQMLRGSKQPVTKFLSGFCVLCPHSMTVERCVSTYNMLFSNLRMATSEKTLNDRLLIHWNGVPTSQFDPSPMVQEFLQKKQRRMNLPNLSSYAERDFVKKFFTSDCLLIDYMYIVVYCTDEFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFM9</accession>
    <name>A0A6S7GFM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001023">
        <property type="protein sequence ID" value="CAB3986497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFM9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18113" checksum="CB529BE45A472A30" modified="2020-12-02" version="1">MNNYTIKSISVPLSSSEMKITEGKLNNIDAHIKQLEKKLVDKTSKLANDLNNLKKYCLDSGGDYKNTLRQENLSVKEENQALKDSLFTATSALSDLNAKIKELENENVNLTTTLKICYDDFHQAHKTCLKQQGPVSSVEIITQMEINSIRLRLIRLRKAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GH96</accession>
    <name>A0A6S7GH96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Serum response factor isoform X4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A081583</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001399">
        <property type="protein sequence ID" value="CAB3988882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GH96"/>
    <dbReference type="OrthoDB" id="2284405at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000987">
        <property type="term" value="F:cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00266">
        <property type="entry name" value="MADS_SRF_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1810.10:FF:000002">
        <property type="entry name" value="Serum response factor b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1810.10">
        <property type="entry name" value="Transcription factor, MADS-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050142">
        <property type="entry name" value="MADS-box/MEF2_TF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033897">
        <property type="entry name" value="SRF-like_MADS-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002100">
        <property type="entry name" value="TF_MADSbox"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036879">
        <property type="entry name" value="TF_MADSbox_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48019">
        <property type="entry name" value="SERUM RESPONSE FACTOR HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00319">
        <property type="entry name" value="SRF-TF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00404">
        <property type="entry name" value="MADSDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00432">
        <property type="entry name" value="MADS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55455">
        <property type="entry name" value="SRF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00350">
        <property type="entry name" value="MADS_BOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50066">
        <property type="entry name" value="MADS_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="302"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="436"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="302"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3988882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="475" mass="51346" checksum="7CBA2E42A4EB39AC" modified="2020-12-02" version="1">MDRSQNEVGEYSLKSEIDTDTQAKQSDETQQDAIMHQQQLHRGIKRDVDEMHSSSSDQENIEDTNKIGIKPGKKTRGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSESGKALIQTCLNSPDPAINTVTLDQRMSATGYEEPDLSYSSHDGVNVDKDGKAAIFLNQNIDLNQTGTGSMTGITLQSAGNGSFPMTTYLPPTSQQLNVSKSGVQSLSVQAVHGGGYATIFTPGATFPNGTYQLGQGTQQPLTQVVNPQVHLQRMQAATTSANSHMDSNCSVTSHNHHHGSPEHPEGDSPGNAGHMSGVPINVLSMQGNEAGQNNVVYTSGNMPLMYNSSGILYATPPTTQSAMNDGDSNGHPHHLVMQDGTVVTNQGIPVSLQHVPGALQVHQEYSNSLQHHSNGIHDNHSSPGDMVGMVDPSSLSVHPDGAMETKMNSHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLW1</accession>
    <name>A0A6S7GLW1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcription factor Adf-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013545</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002169">
        <property type="protein sequence ID" value="CAB3993018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLW1"/>
    <dbReference type="OrthoDB" id="6022395at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004210">
        <property type="entry name" value="BESS_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006578">
        <property type="entry name" value="MADF-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039353">
        <property type="entry name" value="TF_Adf1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12243:SF67">
        <property type="entry name" value="COREPRESSOR OF PANGOLIN, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12243">
        <property type="entry name" value="MADF DOMAIN TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02944">
        <property type="entry name" value="BESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10545">
        <property type="entry name" value="MADF_DNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00595">
        <property type="entry name" value="MADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51031">
        <property type="entry name" value="BESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51029">
        <property type="entry name" value="MADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="24"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="55"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3993018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="345" mass="37927" checksum="4D89AFBD5C5FB216" modified="2020-12-02" version="1">MADNMMSEESRGRFSSTINSLKELLARSQHEEELNELDEGSVTEPFGHIQQQQQMGNTSQSIPNIATESTEQANPATEPSGAPLTSVEAGEAEEERGVSTDFEVELFIEEIRKLGCLWNTSLSSYKDRNAKQNAWQILSNIFNKDVEFLKTQLKYLKDNLKKCLDRRSKATKSGAAASKLATCKYFDQLGFLHSKVSNKPTESNLTPVIEVEDTPSVNPSAPTCSVTQSVLCPNTSTIASAAAKDISSSAPGKSKAENEIIAYTPAKRSKSRAEMAYAVDTLLVKTLQDIQAPTSKSGTVGDDDEDILFCKSLVPVLKKMSARQNRLAKIKINQLLFEIEFSDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GM97</accession>
    <name>A0A6S7GM97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031619</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001754">
        <property type="protein sequence ID" value="CAB3990919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GM97"/>
    <dbReference type="OrthoDB" id="5989961at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="22361" checksum="8DDE9DB145A2CE5B" modified="2020-12-02" version="1" fragment="single">NAIDHLKNRKMTSYYINTPEKQNAMKRHVMGTSSMVMYSYWPQLNAKGKAKKAEIPDKELWKKYNIRVLSYTDNFKTAQKRLKKAEETSNVDSESDSDGCERRKRSKPNTPRKRSRPGSYHYAELSECYDDTTSKQHQKVVNSVLRINKTFVLTTLIWTFARDLSFLHFSPDFVNRKPSLFIQDRESHKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTW1</accession>
    <name>A0A6S7GTW1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">IkappaB kinase</fullName>
            <ecNumber evidence="3">2.7.11.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A076675</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-seryl-[I-kappa-B protein] + ATP = O-phospho-L-seryl-[I-kappa-B protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19073"/>
            <dbReference type="Rhea" id="RHEA-COMP:13698"/>
            <dbReference type="Rhea" id="RHEA-COMP:13699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.10"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.10" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020002964">
        <property type="protein sequence ID" value="CAB3996864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTW1"/>
    <dbReference type="OrthoDB" id="267381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008385">
        <property type="term" value="C:IkappaB kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008384">
        <property type="term" value="F:IkappaB kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033209">
        <property type="term" value="P:tumor necrosis factor-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041185">
        <property type="entry name" value="IKBKB_SDD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046375">
        <property type="entry name" value="IKBKB_SDD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051180">
        <property type="entry name" value="IKK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22969">
        <property type="entry name" value="IKB KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22969:SF17">
        <property type="entry name" value="INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18397">
        <property type="entry name" value="IKBKB_SDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="677"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="13">
        <location>
            <begin position="528"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="14">
        <location>
            <begin position="681"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="705"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3996864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="705" mass="82532" checksum="9A2D28EA9D3C9227" modified="2020-12-02" version="1" fragment="single">MAERRKIGDWIESGYLGSGTFGMVKLWHNEVTKAKIALKTCRNDPPLSEKNRERWRQEVEFLKRIKHPNIIETRPLPEELVEEGRRMKFLPALCMEYCEGGDLRKTLSTTENCCGLKETMIIRVCEDIANAIECLHKENIAHRDLKPENIVICQSGSKNIYKVIDLGYAKQADQAGLWHSFVGTQYYLAPEILTGQKYTLKVDLWSFGILLYECCTGNRPFPGHCQELYESMRSKEQQFIAVTFEDENGTNVRARQKLVFSNNGQDMLVYRDKLPEVNRLNCVLQRKFEKLFRLLLDGNPSRRGSCETDAGTRSWRDCVDEIRNTKVIEVFCIDLYKQFAYELTSNFSLKELQSLLEKDTGIPSEHQELFTHDGSDLTSLSSATACLTAFMFNKAFNPKLELRYKHELPSILLKMLEDPEAFSKRSTKRHMEVYKHSVFFIHRQIENNKCLIRGLKALVIRLLKWSRQEFTVRSETVGQRVTELRSVFSFFDQSLRTDLKNYESKCSTFKNGVTRDMPDFEAWRRVDINNILREASEIFKRKSELQNKIATMKNNERVSKTPERSMQQLTQRAKEIQSRYENMKASMRNQPGMKKPEDKSSCWKDKIGTVRDTIKMILKEVEKINEEFYHFLRELFILRQELENFIPTLKGLETKTIELGGKIREWQQSRQEQIWKLLSRSNDKEEKAEKDQASSQQRPAVNPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXH1</accession>
    <name>A0A6S7GXH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003254">
        <property type="protein sequence ID" value="CAB3998044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXH1"/>
    <dbReference type="OrthoDB" id="10385543at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="33371" checksum="0B93D69750D4B655" modified="2020-12-02" version="1">MYRPRMREQVDEDAETQDPFNCFEDNFNAFYEEQTSNRIQNCQPSITSGSQRNDATPTRDSSGVSGNNNSERLILDLQKEVATVKRTLSRMQDVEEEILACVKKIRRGTEAEKFDLSNCCHTENITQLLGKYYTSKARFPIDFPEKQRALKLEFNNSPTGLSVEELLLRFKKFESSKMSYWRSEERRRLLGIAGYEALLRAPTEALADKLLQLIGQKYSVNTNKTHLQNEVMLARKYVREMTVARAKKEKEFWQAMYTWKTTTWPNGLSPDDWREVRREDLAAYDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZV2</accession>
    <name>A0A6S7GZV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A076557</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003463">
        <property type="protein sequence ID" value="CAB3998895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZV2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14080" checksum="24D4C0D0363E406F" modified="2020-12-02" version="1">MKRMRTVADSDSATSESDVENSYNTDNEVETDSASESDSDKVDTSSEPTALDLENVLTELYRLIGKSKKQSKWNKSGIKNIPIRQPKSSRKRTKSNSKSAKNVDNTEMNDGSKEWLKLETETGQNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H317</accession>
    <name>A0A6S7H317_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6589 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045412</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003401">
        <property type="protein sequence ID" value="CAB3998628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H317"/>
    <dbReference type="OrthoDB" id="6146693at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6589" evidence="1">
        <location>
            <begin position="440"/>
            <end position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="730" mass="82771" checksum="49F2E6ADA70AA0EE" modified="2020-12-02" version="1">MSHLKETENCILCGSKVPSVGHSRFYVRHDGSTKLSQVISELSTNLHRRLQIDWSLRQFCCRDCKILLEKRQKVSAKVAQIEADILNRINVSKGTCSKKLSYDCDPAINTSTPKRTDVILQTTSHPVPPVSPIQPISSKRLCDRSCQTQTTFQSHEHGHEDLGCKIIVSWPSQQRQRKLNKCLEPLGKAMLCGTWCDIARGVFKVNEIRHELLTLFTKAVSVECSSMTSLNNPTILKDVTTEGIRSLTITKIIKELKERTPILYSTLVSSAVSTRSKRGDADIIPGVAVAASILLKERCRRATGLQLMITTIIKYSGFNSMCAFLSALRIGVSASYFNKKCDEFGSSYNERLLADKSKEEQALRRHYYEDIGNGDFGPGWKIVFDNFDMYQRVHDMTEDNQNKDIHWVNHVKVSNRVSGNELPDDKPIKNCLSDLDNSKVAPSAIEHICQRANYVNLVSRVLVEEIPCLQFCKDSILYHIPHKHSLEAATKSEKKCLGIIQENENTTEGMLETLKSMHSYVPRWTSKENITHFTDIGHVGDQLTVERSVNCLMAVSNGFTATERLEGIYFEIADWHADLKFLDLIYKRFYSTSSANDICTLFAERNLINRRNVKTDTHHSYAANKQMLLLAIRSRIVVAAMKVLGLETLDGNMTTFHFPKNKPKNNSNKQRYIKQIAAVIVDEFVIDKETNNSIINYVLDERDKEQLLKNCTTVDGRFCCRHPGCSKTFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H644</accession>
    <name>A0A6S7H644_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044252</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003355">
        <property type="protein sequence ID" value="CAB3998442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H644"/>
    <dbReference type="OrthoDB" id="5974428at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46177">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46177:SF1">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18848" checksum="DDD671523207A837" modified="2020-12-02" version="1">MYCIFCGEEGATDGVCDECSIEKSVEQLITHYFHYGYPYDAIVGLLNKKDIHMSVRTLKRRLRSLGLRRKGNTTVIDNETIRTAIQKEMEGAGKLSGYRSIWHALRLRHHIHVPRNLVAEIMKEIDPVGVEERRARRLKRRIFTSRGANATWHMDGKLYSRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9H8</accession>
    <name>A0A6S7H9H8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A057123</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020002149">
        <property type="protein sequence ID" value="CAB3992910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9H8"/>
    <dbReference type="OrthoDB" id="432234at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="16"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3992910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="17423" checksum="78F026B589D449C1" modified="2020-12-02" version="1" fragment="single">MANLNTLKPSKVDPIHVFVTGGGGSRKSHLIKAIYQTVTKTFRHDPMNPELPSVLLIAPTGVAAININGTIVNTALVIPRECGNTVPAMSDQRRTQMRLSLAKLKLIIIDEISMVSNMGLLHIDQRLKEILVTPNSELFAAIGVLVFGDFFQLPPIRSAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGN4</accession>
    <name>A0A6S7HGN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082831</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004842">
        <property type="protein sequence ID" value="CAB4004244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGN4"/>
    <dbReference type="OrthoDB" id="6610375at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF19">
        <property type="entry name" value="ZINC FINGER MYM-TYPE CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="300"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="393" mass="45146" checksum="DA90C63FFFFC7268" modified="2020-12-02" version="1">MSNNSIARDFFGTLQNLYVFIETCTKRHAVYLKHQRKLNASDDEGKKKREYVLKKLSDTRWACRADSITAIYHTLEAVIATLKEIRENEKKAHIAAEAKGLFQNVCDFEFVLALEVLKKVLLLSKGVSDKLQSEDLDVVTGCERVADLLSTVQALRCEPKFEEFWETTVTKCRSLNIEEPRQERTHKLPRRIDDNPDTVVHLTSKEKFRISFYYNVLDLMVSSIESRFDKNNAPVLMGLGYLTLFGNPEAWKHISVAAQWFQCDLDVDEIESEIFSLQTSSLLANILEKAKLEKRKASFDDLFKALQAEPECYGNLTKLMKIALTLPLTSTSAERTFSKLKLIKSRLRTTMQQERLNSLMLMSIEDDFDTYRPLYQTVANEEEEREAIVSGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHF2</accession>
    <name>A0A6S7HHF2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055601</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002571">
        <property type="protein sequence ID" value="CAB3994961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHF2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="462" mass="52195" checksum="00A8208E9A42F33A" modified="2020-12-02" version="1">MEETEKKYPQYDDMNYDDLTSNFDELTNRLNREEEYNSDPLVVTDLNREISYVRRLMNERDIAETTFTEDNDGTVNISGPTGSTNVPGVDFVEDPNNLLPDVLDAFNESFDADWDDIETRLSKLKKFSTIEKKRDFENQVERVQAVVRVIKGKEKLVLDPRNKYVRELIKRSSVRTLKDGTEVLMFRSEQGIDKSGTQIMKRGMTSIPVYSKNSIALREYKELVRKIKNEPEKEAGVDTTDVVEDMFEDIELIDISQQLDDIPALTPEENRELRGVLNPGEGSDPNSRIGPEGALQVQVEHFQDTIDKTMKLREETDDPEEFIKLEERIIALREARDRTAMQRELEEGRQAQVEDISRLRKFIDWVGKEKVGLVGIAVSTASLITALLIHARGAIVKTAKTTSKVAKALANLAKKAGPILVPILNAVATALSWGAKGIAWLASNLWVLAVTAALIAYNYLES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJH0</accession>
    <name>A0A6S7HJH0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA helicase</fullName>
            <ecNumber evidence="1">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A018155</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020004597">
        <property type="protein sequence ID" value="CAB4003320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJH0"/>
    <dbReference type="OrthoDB" id="196131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18787">
        <property type="entry name" value="SF2_C_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000008">
        <property type="entry name" value="ATP-dependent RNA helicase RhlB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47958">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE DBP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="7">
        <location>
            <begin position="8"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="157"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4003320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="26607" checksum="5B3A8553669CAE43" modified="2020-12-02" version="1">MHVCIIVYLTSFYLGPDSLTLVFVETKKGADALEDFLDREKYPATSIHGDRSQREREESLYSFRTGRTPILVATAVAARGLDIPHVKHVINFDMPSDIEEYVHRIGRTGRVGNTGLATSFFNDRNRNISKVLVQILTEAKQEVPTWLESIAGEYHGGGSRNKNYRRSGTSAFGSRDYRQQGSRGGGGGYMQGNPGYGQGYGAGYGGGSYGGAPYGGGGGYYGGYGGYAPRGNPSNMGGRSNDWWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJI2</accession>
    <name>A0A6S7HJI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005019">
        <property type="protein sequence ID" value="CAB4004846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJI2"/>
    <dbReference type="OrthoDB" id="5980364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="81" mass="9036" checksum="6F5CFC855B380EDA" modified="2020-12-02" version="1" fragment="single">MSNKIRSGIAERLKDGDVTDEKCRRLIVRELDDIKSKLDGLARKDLLSSLCFLQEGVNGLPQSLLQVDSRSARETSFQGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLB1</accession>
    <name>A0A6S7HLB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Laccase-25-like isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A032434</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005400">
        <property type="protein sequence ID" value="CAB4006064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLB1"/>
    <dbReference type="OrthoDB" id="10066563at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF394">
        <property type="entry name" value="FI03373P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0186">Copper</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4006064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19846" checksum="D016E1EAD82C5063" modified="2020-12-02" version="1">MNNSRFSHPIHLHGHSFHVVKVGYGQYDSQGVLVNASSDLECDTPCTRAPNWRANTPPAGIQATDSTVRKDTVIVPSGGYVVVEFIADNPGHWFLHCHIESHQLEGMAAVINEVETRQNPPPNGMTSCRSFTWSVEEFNVKRKWRKVERIRVKKSSARRPALENLSLLIAFLIAQMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I0S1</accession>
    <name>A0A6S7I0S1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065924</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003383">
        <property type="protein sequence ID" value="CAB3998547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I0S1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13203" checksum="59F86200B105C7C6" modified="2020-12-02" version="1">MRFLAMFGQIKDIPRAKKSNSEKVQYKSGFDDENSDLHDAVSGDRIASHSENHLICGANCSEEHPSMVQYAKDIRKDIESIEKKSYFIEGENVTFSFELIPADMRWLAFISGELPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I0V4</accession>
    <name>A0A6S7I0V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029154</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003838">
        <property type="protein sequence ID" value="CAB4000441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I0V4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11264" checksum="EE3088C8D29748AA" modified="2020-12-02" version="1" fragment="single">MEDGHEISSSASLRKNSRLLAETLSQLGSDDWGNISDIPLVENVANEGQNSDEDCEIVKFIEDTERDIAAKSTEHVKVVLTRDKTANLYKRREKSWTTVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I1C0</accession>
    <name>A0A6S7I1C0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like GTP-binding insertion domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010998</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006718">
        <property type="protein sequence ID" value="CAB4010233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I1C0"/>
    <dbReference type="OrthoDB" id="2441813at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="1">
        <location>
            <begin position="183"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="448" mass="51173" checksum="88E3DAF5E114823A" modified="2020-12-02" version="1">MQRICHLLDMFEPALCLSTSLTDLATQLDTTVLLPWLTEIAQDENIKFFLSDQVHAVPTYTVIVDSSLEFTTYVYNWPIPGDHKICNDHKHSIKSVEDVRELLSTIKTSKICEGVCEGCESRCIECQVIMETSDELCNPCSKASKQLKKRTEKRTKVIPINANFLESGFHLGTVFGSLCDIPHLMKTAQNCLYNSGSGSCSRLMWNYGQYPLFRHIADIFYWDQAVALHVLPKLTLEHIVLTSFSKMKVKLATQVLSRSVALALEESGNSKVLGTAEFYSMMNDFFDCTNVRSLREHERKRNDLIKTYTAIDDDRFDWLHDVFLKYLENWKRSTVERAGQYSADDRGKMFLSSQTHEGLQIAVHFHVEAIQFLLQQGFQYVLSERFMQDVLEDYFGHQRAKGGRADNPSAYEFGYNDLTIAAQRDIAPVVRGNVGGPIREKEMVHCKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6J7</accession>
    <name>A0A6S7I6J7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035417</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007164">
        <property type="protein sequence ID" value="CAB4011480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6J7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13298" checksum="AF422AC826BF998E" modified="2020-12-02" version="1">MDKAKEEAGGDSKGGGTRTDNRRNNRGFNTGKRARGCVVDNCPEDHPPWVITVEDVLELCPAVLMVARVTLIVGIYTSLTEILRITKVITVIPRMELNNQTKMRTLLVLPLQPIKSIKCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9M8</accession>
    <name>A0A6S7I9M8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008763">
        <property type="protein sequence ID" value="CAB4015555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9M8"/>
    <dbReference type="OrthoDB" id="5989551at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301:SF11">
        <property type="entry name" value="GIY-YIG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="25846" checksum="ABEDD7671E09ECEE" modified="2020-12-02" version="1" fragment="single">MDKAKYTEQVNEMLGDQTVYTRITDKRRNPTKRTETDLENILKELRRSGNITDREYWQLRAFDSSPATFYGLPKVHKVSLICNQDHYTLGESSVDVIPLRPINSNIGSPTYSLSKYLAKLLKTFCAKNEFSISNGKEFADFAKSQTLGTDETIVSFDVVSLFTSIPVPFALHIVQKKLKETDSWKSHTALKEEQVVKLLKFLLNNCYFKFNETHYHQKSGCAMGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG60</accession>
    <name>A0A6S7IG60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A035033</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008975">
        <property type="protein sequence ID" value="CAB4016113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG60"/>
    <dbReference type="OrthoDB" id="5990091at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050090">
        <property type="entry name" value="Tyrosine_recombinase_XerCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30349:SF41">
        <property type="entry name" value="INTEGRASE_RECOMBINASE PROTEIN MJ0367-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30349">
        <property type="entry name" value="PHAGE INTEGRASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="289"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="289"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4016113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="499" mass="57477" checksum="41208564700058AF" modified="2020-12-02" version="1">MQSLVRQVFLKSHVEKKRYEAGTIKSYLMSLRHFYTFLVSDRPENFNFDVEEVNAAREKVKLWSVSYKRESSERKWQKLQEDMLNRLTPGNIWSFEKSQTAREAVKIIGKHSDNSQTTVVTQQSYTLVRDFLFTQIFIDNANRPGVLAGMTIDEYKRMTKQDDTYIITVLKHKTSHVHGPARLVLSSKLKSWLSVFVEVMRPQIASATCGNVSGHITKAVQSVFKKSGINVKVTSTSFRKAAVTAVHSGKPTFSGKLARHMAHSETTAKKYYLLTEKTKESVETSKELGELMRCDGEEQQDSGKKGDSETRDKEDTAGETECATNQKGEWNDSDFEKVRTIFGKDIAAKTITMERVREGIESNEELYGMSPRRIYDKIRKTINKESASLQNIPELPQTCESLEDKLQRFEECSETVDEELSISIIQPSERNSNFTNEEMNSLQKMFKDMITEDKKICRIEIEKRLSTNKEGENILKKLSVQKVVNRIKYERRKHRQQPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG88</accession>
    <name>A0A6S7IG88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042393</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009185">
        <property type="protein sequence ID" value="CAB4016607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG88"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="10010" checksum="585D4406F8AE5FC2" modified="2020-12-02" version="1" fragment="single">MNYKTARNRTNYELRKIKRQYYQTKLSESSGDSKRTWAVLNSLAGKPSKNREVNEIKVSPNEIITSSEDIANHLNQHFSEIGVKLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IKN5</accession>
    <name>A0A6S7IKN5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sarcoplasmic calcium-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A022158</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010554">
        <property type="protein sequence ID" value="CAB4019624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IKN5"/>
    <dbReference type="OrthoDB" id="427950at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028846">
        <property type="entry name" value="Recoverin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23055">
        <property type="entry name" value="CALCIUM BINDING PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4019624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21277" checksum="EF4D04EC3FF722B8" modified="2020-12-02" version="1">MSSLTEKQRAYHLRKMRTRFTRLDLNHDGFISREDYELMATKVQECGKLNAENAESTRNAIMTVADALGLKPGVKIFVEEAAKKANREYSVIAQEKQLAFLKETHNPIFDAVDLNKDGHISLDELKVYFQIIAPDISEDEVTHSFNVIDSNKNGEISREEFITAAFDFLHGFEETEVSKVFFGPLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN69</accession>
    <name>A0A6S7IN69_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061729</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011040">
        <property type="protein sequence ID" value="CAB4020604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN69"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15817" checksum="4871103F434C4DD0" modified="2020-12-02" version="1">MDASPVGLGAILTQTTPEKDDKKVMAYASRSLTPVESRRIERWCLRLEEYSFHVKYRPGPKNPSDYLSRHPCTATNTRKPLENIDEEHVCLIAENAIPVAMDIACIKDATRQDPNLSKTIEFIQTNNWTALEKQDKMPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPD0</accession>
    <name>A0A6S7IPD0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010084">
        <property type="protein sequence ID" value="CAB4018610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPD0"/>
    <dbReference type="OrthoDB" id="6625098at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23515" checksum="D67F12691D185225" modified="2020-12-02" version="1">MVESTRFLTDLKSLAMQIREKGHILLGVLNADKFVRIAKKISRNVRVVNNQEIVRQYKIFVRRLASKTEAITIPELQKMDSKDLIKKFLTSGGELYVGCEMVVEAIVVAAIKMTVESIAESVISRYNTHNSKLRSMSEEAVNNELWIACNGPELGGADRILSSALSKYFRHGNWHFVTRKGEQSKLYNSKVINRIISQESRLPFVTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IW59</accession>
    <name>A0A6S7IW59_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">receptor protein-tyrosine kinase</fullName>
            <ecNumber evidence="2">2.7.10.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A035004</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.10.1" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020011405">
        <property type="protein sequence ID" value="CAB4021380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IW59"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048013">
        <property type="term" value="P:ephrin receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000802">
        <property type="entry name" value="Ephrin receptor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000268">
        <property type="entry name" value="Receptor protein-tyrosine kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.10">
        <property type="entry name" value="Tumor Necrosis Factor Receptor, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027936">
        <property type="entry name" value="Eph_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050449">
        <property type="entry name" value="Ephrin_rcpt_TKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46877">
        <property type="entry name" value="EPH RECEPTOR A5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46877:SF14">
        <property type="entry name" value="RECEPTOR PROTEIN-TYROSINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14575">
        <property type="entry name" value="EphA2_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00109">
        <property type="entry name" value="TYRKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01411">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 17" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="15" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="18" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="18" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14 19" id="KW-0675">Receptor</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="13" id="KW-0829">Tyrosine-protein kinase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="16">
        <location>
            <position position="622"/>
        </location>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="626"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="627"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="640"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="19">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR000615-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR000615-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR000615-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB4021380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="772" mass="87499" checksum="9F2A2A22A956EE85" modified="2020-12-02" version="1" fragment="single">MGSNYRAIQCTWILSLKIIIYILFNTFSCFFIGELGPKALGDWKDLARSQGNVDHWDYRQSKLITVIRAGSGASWFFTPMLANTPNTSYLDIEAACTNNPFRLEIYGSSDSSFKNLESIQNVTFEKRSLNTATIEKSYRYLCILVRATSQTTFYIYSIKMYHYFCEKTTMHNIILSQVDSSTTNISVRVQCGDNAVASDRNSTNITANCTPKGNWIFGNQKCVCVEGFQSSNQECSRCLTDYYKNVVGDEACHKCPDGKTNNMMHTKCKCKKDHYIGDNESGPCFVVPSKVVDLKLEQLTNTSVNITWRKPKDNDGFNGSLTYTVMWYPCINESKCDTIDIGKNATNLANIIVPNLTLYETYKFKVFSIGSILQNVSDDKWKFAEKNFTLKAVVNKVTTFPTTTDTNTMTPGTSNNKGKDKDNIFIYIGAGVATVVIVLLIVLLIISRWQRGKSKKSGKDNLGFERDISLHYVDPITYADPERAVSELANELDRHSIKLETIIGGGQFGDVYKGEMKLPEQPATKVAIKKLKPGASYKDRTDFLIEASVMGQFKNLNVITLEGVVTKSTPFLIVTEFMENGSLDKYLKENDGMLNQLQLLRMARGVASGMEYLAGMNFVHRDLAARNVLVNENLICKVADFGLSRDLDNTEDSEYESQGGKIAVRWTAPEAITYLKFSTASDIWSYGILLWEIMSFAEKPYRNWRNGEVVIFVNQGYRLLPPMTCPKTVHELMKECWMTDRTKRPPFKEIVRIIDEWIKYPEKLLEDYVKVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IY10</accession>
    <name>A0A6S7IY10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016721</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bile acid:sodium symporter (BASS) (TC 2.A.28) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012960">
        <property type="protein sequence ID" value="CAB4024316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IY10"/>
    <dbReference type="OrthoDB" id="188035at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016833">
        <property type="entry name" value="Put_Na-Bile_cotransptr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18640:SF10">
        <property type="entry name" value="SODIUM_METABOLITE COTRANSPORTER BASS4, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18640">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 10 MEMBER 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13593">
        <property type="entry name" value="SBF_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="427" mass="46969" checksum="0EBB26F3281486C2" modified="2020-12-02" version="1">MAQSDVVVEVVQAEEADEDFKKTSILTSFKNFCMRNYLAIGIILSIIIGIFLPQPAIYLSQRMPVAKICIIVLFLTIGVRIRLVEAKSAVKFYKEVVVGLVLVLFVGPIFATNVLNHVPNFGSLIGDDQNWRNSSNSSEEMAILGPEEFRLALQIYFVCPTTPAISLILVTAANGHRGLSILVAMLCTIIAVFTIPPMLTWFLPTFQHVGLNVGQVLLDTVLRVLLPLVIGRCLRCVPPVKKVVKKWNNTIKYFGQNFLIGLFLVKVSETSASGNLARVSVVNILCVVALGTSLTTFNALSSYCLISILPWFSKKSAVTLSIILGCTRLLTLAVTVVDVLPDSTGDKGLLVLPMVFVYIAILLTMNGFVSLVKVKEEDTALDKPSQTTEQDKEQDKDMNDSTINTKINEVAIFTIYTDEMSVKDEQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYN0</accession>
    <name>A0A6S7IYN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tetratricopeptide repeat 21B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A080181</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TTC21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012183">
        <property type="protein sequence ID" value="CAB4022833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYN0"/>
    <dbReference type="OrthoDB" id="6017543at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005929">
        <property type="term" value="C:cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030991">
        <property type="term" value="C:intraciliary transport particle A"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035721">
        <property type="term" value="P:intraciliary retrograde transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061512">
        <property type="term" value="P:protein localization to cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000245">
        <property type="entry name" value="Tetratricopeptide repeat domain 21B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056832">
        <property type="entry name" value="ARM_TT21_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056833">
        <property type="entry name" value="ARM_TT21_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040364">
        <property type="entry name" value="TTC21A/TTC21B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14699">
        <property type="entry name" value="STI2 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14699:SF0">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 21 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25058">
        <property type="entry name" value="ARM_TT21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25060">
        <property type="entry name" value="ARM_TT21_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25062">
        <property type="entry name" value="ARM_TT21_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="Tetratricopeptide repeat protein 21A/21B N-terminal ARM repeat" evidence="5">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="Tetratricopeptide repeat protein 21A/21B second ARM" evidence="4">
        <location>
            <begin position="198"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="641"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF25060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF25062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4022833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="641" mass="72613" checksum="9B72BA537719D34A" modified="2020-12-02" version="1" fragment="single">MALIYAHKKAKMIDKESVQELEARLKQTRTSCGENALYFAAMFLWHTGRHDKAREYVDRMLKMSNGSKEGAVLRGWIDLTSGRDSALKKSAKFFDDALQGSDTSQNIDALLGKAAYLVRKNNFTAALEFINKVVVSYPEFEPALVEKMKIQLALQDWEQTMDVAQRCSKLNRYSLEVHKMKIMFLLCRDGKYDEAAEQIGELIQCYDRYEPKSHYLYYEAGKLFSRVCGRNPLVLQQTFELIVRAQTLSESTAEYAVELGNQLVMQKKVRDAMKSYRTAMKLDETSVPALTGIINCQLLENMVDDAEQQLEFLSEIQQSIGKSAELSYLGAVLARKKERRFEEVIVLLNESTDSHFKELQGIPLGFEYFLKLNPEFLLQVIEEYLIFAPNEPQSSGQPVSPMLKRCAAVLDPLTKATPGVLQGLYLMAKVRYLSGDIETAKTMLNHCLEKHDRFSEGHLLMAQIHLKDGNYRMADQSLEVGLSYNFQVRDSPQYHLIKACVHKNLGNHEECIKTLNTAMALPGVKKAIPAGQGGKKASSLTLSDRVSVYLELAGAHSQLNHGHEAAKIMQDAMNEFSGTSEEVRISIANADLFLKRGDHKEALTILRSVTPEQSYFIQAREKMADIYLNHRKDKRLYASCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J6X8</accession>
    <name>A0A6S7J6X8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058366</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013809">
        <property type="protein sequence ID" value="CAB4025761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J6X8"/>
    <dbReference type="OrthoDB" id="5976613at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031248">
        <property type="entry name" value="RNF213"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605:SF16">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605">
        <property type="entry name" value="RZ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="446" mass="51381" checksum="083B39E3C7C08CA1" modified="2020-12-02" version="1" fragment="single">MLTKRGLPWLKQIKESHGSVALTTMVQVEAINSSGVYYIADNEKTKESKHVDSELCLENLVSLVVPKDEIKNRDEKIYSLEEIKDVQSKLMLIAGKAESGKDEVDQFNQVFEGILRVSKLYLQLCEVGEINYITWKKEFQCSKNEGCREMLLKNIDETCETMENELKEWEKTVNDKRHKCYSLNHFTMKQILNLRKELAKACIGQVPVDELPLQTFMLLEAVNKTIDPLLLANVLRTIIPENSIKLTEDSFKDEQKYFASDIEGKRTLPENVEEEVDIIQPKKRRRMNSLETLTSAKETLENMSMTLVNTEDYLLAALQHCGRRATKADLITWVVSHENDEDETVKMLCEEARKNPRLSDLVSVFEPEGQTVNDEEMIEFKREIESPKIVPKPDKPYVDNREDTYLTLEIVAAILEKLSKSESDYFRRKLPSALKEGEPNLLLVPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J746</accession>
    <name>A0A6S7J746_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A026736</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020013261">
        <property type="protein sequence ID" value="CAB4024830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J746"/>
    <dbReference type="OrthoDB" id="6432165at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF6">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="162"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="578" mass="65267" checksum="899625B6B4D78400" modified="2020-12-02" version="1">MKSLGERDYAAQETMHHLLSLKLHSSSFTVMPVSLNGSRRVRDTASIDEGESCTDYSLLDVYANREQYESSQNSNFGLYCKYQLLRYKPWRTTQNNAWGDQEPTDKVLINCWHEFLQTPYGQSIVPDWFDKLPTVTQSQEPENEPSEEQETTREENLLRSKCAIAATTGKAAFNIRGVTVHSLLKLPIGSRGNKDLTGQSLCRFQESVNNIGYIIIDEYSMLGQVTFGRIDKRCKQATGYNDKVFGGKSLTLTGYPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVAKLTVNQRVQGMTSEQIQFRDLLLRLRKRDSTVDDWKLLLTRQPSNVINLCDFEDSTRLFYSNEQVGNYNHDQLTKLEHPIAHINARHSSALAKKISSHDMSGLEPVVFLAKGARVMLTMNLWSSVSLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYKGPVFDESRPLCIPICPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWTDIGKSERTAGVSYVAISRVKSLASWVIEPMTYERLTSLKSSANLQYRLDEENRLDQLAQATSSAFRSTNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JB37</accession>
    <name>A0A6S7JB37_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A079353</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.49" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020016179">
        <property type="protein sequence ID" value="CAB4029445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JB37"/>
    <dbReference type="OrthoDB" id="116216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000115">
        <property type="entry name" value="Polyprotein of retroviral origin, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000002">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13975">
        <property type="entry name" value="gag-asp_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4029445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1234" mass="139989" checksum="AEA0D318E5A44A49" modified="2020-12-02" version="1">MGSSRDGESPKKNDSKIRLSTVSSASKKKTLMVETTINGKNKLCIVDTGASISLVSKDQWQPLKLDDTPLFPSDIVAEAANNSPIGILGKTTLNVQFDENNKSSHDFYVANEMVSEIILGLDWLVTNKVNVDMAEMVLKFPDGTTKPLCLFDSTIADPLGVVLDEDLVVPAKHEVFKTARVRNPTLNESILEPNMNLSEKGVLVARVIVQPKEQRVPIQIINPGTSPIKLYKGMTVGHLQQVGDELRDPTFINSKCGTPSAEDKIKFELEHLSGEERERMENLLNKHQDIFAKNSSELGVTTLAEHKIETGDAVPVKQLPRRLPNSLRTVVEDQVEEMLENNIIKPSNSPWSSPIVLVRKKDGTWRFCIDFRKLNDVTVKDAFPLPQVADLMDNLAGHQYFSTLDLASGYWQVPVDESSQEKTAFVIPGGGHFEFLRMPFGLTNAVPTFQRLMLTVLNGLLPLKCLVYLDDVLVVGRTFDQHLENLDDVLQAIDKDGLRLKLSKCSFAKPSVDFLGFTVSAAGLAPNVTKVEAIRAFPTPQNLTELRRFLGMTSYYRRFISGFSDIAGPLHRLTQKGVRFDWDKNCQRAFEQLKEQLISAPVLAFPDLNGDYILYTDASDVGIGAVLTQKDENEEEKVVSFASKAFSGAEKNWTTTEKEAFAVVWVLQYFHPYVYGRKVTIYTDHKALKWLRDIKHPNGKLARWILKLEEYDYTIEHLPNTKMQHADALSRAPVNTILVSMSTWQEFEDMQTFDEDIQLVKEWVQSGSRPDQKPVDVSVTLDTLYKNFDSLVVKNHVLCRKWTDKTAKEREQIVVPTYLTPNILKEAHCQVGHLGVAKTFEMIQRKFYWPGFFKAVEEFCRNCEVCSKNKAVPRPRSPMKPIEVIPIPFYMIGVDIIGPLKTTSKGNKYILSVVDYYTKYAEAVALPNQEAVTVARALEDIFARHGMPSVLLTDQGSNFESKVIASLCEMFGIEKRRTTAYHPQTDGLCERFNGILKSLLRMRVNKEKNDWDEQLPHALLAYRVSTQSSTGVTPFEMLYGREVRLPFGTDQEKLVSSPTHGPAKYVEELKKRQDILRKLVTKRIEKAQEKQKRSYDLRYRAQQNKRFYMGDTVLLKNFRARGLDEKYTGPYIIVNIRENDCEIESLESRKRKVVHANNLRRFVVETVANPLGEESEDMLSSDSDESTIELINERAGVRLAPRGIDDQAEPLNLRYNLRQNRRQPDRYGVPVLDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JES5</accession>
    <name>A0A6S7JES5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015820">
        <property type="protein sequence ID" value="CAB4028911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JES5"/>
    <dbReference type="OrthoDB" id="5368908at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="17984" checksum="55E29F3027BA9D44" modified="2020-12-02" version="1" fragment="single">DKVPGGEDKVPGAEDKVPGAEDKVPGAEDKIPGGEDKIPGGEDKIPGGEDKVPGGEDKVSGGEDKVPGGEDKVPAGEDKVLAGEDKVPADDMEIYTSAKDGDELVTNINSDLENVLKWMLQNKLQIHPTKTKHTYWKNIDRRHLQEVFVSLLDLISQKCEELSMVGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JH52</accession>
    <name>A0A6S7JH52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Steroid 17-alpha-hydroxylase 17,20 lyase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A038177</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016178">
        <property type="protein sequence ID" value="CAB4029444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JH52"/>
    <dbReference type="OrthoDB" id="3934656at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004508">
        <property type="term" value="F:steroid 17-alpha-monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042446">
        <property type="term" value="P:hormone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042448">
        <property type="term" value="P:progesterone metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289:SF1">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE_17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4029444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="40653" checksum="E92FDA2654B4A633" modified="2020-12-02" version="1">MQTLFLQLHDDFGGFCHSVSRLVHLVFYHYLHEEKEHASRTISLPLPWKNSTNPVKPFSKLAEKYGDIFTVTFPNDDAVILNTASLVREAKLAPGRQEDLMGKSPESFYPFGEIMGHNMASSDYSPAYLFERKVFVSAMHIFGAGIERASVRAGHAVDIAIKEIGNKPGRSFSPKNLLESSIVVQLLEWLTSKKMALDDPIVKELNEFAAIMTRQALLNTIYQLCPFLCYLPTQFSREIKRAQQIRENIFPPEYRAHQESYIPGIIRDLTDSFISAYEKELAKETRKDIGSKDSGIPGLMLNVVTVGSETSSTWLTWFFLYNVLYPNVQSKIHEELDAVVGRDRLPNWKDAIPPSYLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JMP0</accession>
    <name>A0A6S7JMP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TBC1 domain family member 30-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052182</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018557">
        <property type="protein sequence ID" value="CAB4032627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JMP0"/>
    <dbReference type="OrthoDB" id="10453753at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="360" mass="40889" checksum="2ED8DF31707E1A10" modified="2020-12-02" version="1">MVYSMAPFPFPKIVELREKYTYNIHPLSNNLSPEKRVKFNQKTKNGYISSDDEDDDVSQLHIGCLGILSPKTTSEGSAHKVRHSGGYPFTLNFSKPTNCSDNVPRRSRPPVDVSDLEKEYNRTRKMQQQAVVVFSQSNASKSQDLREIPPAINHLFVVTRARRNKWKEHLQKERQRQDKLLPVHEEEEDWERGHVEKHANEHVTDAAEHLVGLFKGATTDESPPYDQDRTLEENLEANLDIGVSLTDQNTLPKSLKSSKDLNTFKIVRYSNPSNSLKTTRDKSRTKAVKTSLSISSVDPSLVLPDKKCIYPAKFFPFPGTRTKVSNNGLLCSKRTETEQPAKKQSFISGPPMPCQARTNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPT4</accession>
    <name>A0A6S7JPT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009965">
        <property type="protein sequence ID" value="CAB4018351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPT4"/>
    <dbReference type="OrthoDB" id="8838209at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16494" checksum="BCCB2C498D50D5E8" modified="2020-12-02" version="1">MPQSLLKACKQKVHPKPSDRREMVQIACDDIRKHSTLPGRKNLSKIASTIVAKHKESFCDVVADKVIGSGYESLCKQMEERLFNLNRKGMKTSSFGEKLNEVDGTSEPPAKKTRKPVKDLYGCINWQPDSYPENENKETQKEIQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVZ4</accession>
    <name>A0A6S7JVZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020862">
        <property type="protein sequence ID" value="CAB4035251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVZ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14079" checksum="A11E7E195A3E5784" modified="2020-12-02" version="1">MCQIFTEGVVVNDFVNEVVVVNDSANSCETDQDTSQSRVCKSNAICSNIEKPKSGQTINTEAIQALSDSLVHITEVIAKLQENMNKSRQNTELQVENEPNYMQERTAEQELNFCFNAQNIKYLLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYL0</accession>
    <name>A0A6S7JYL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A050491</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the polycystin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020897">
        <property type="protein sequence ID" value="CAB4035284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYL0"/>
    <dbReference type="OrthoDB" id="5986471at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005261">
        <property type="term" value="F:monoatomic cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006816">
        <property type="term" value="P:calcium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002859">
        <property type="entry name" value="PKD/REJ-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014010">
        <property type="entry name" value="REJ_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46730:SF1">
        <property type="entry name" value="PLAT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46730">
        <property type="entry name" value="POLYCYSTIN-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02010">
        <property type="entry name" value="REJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51111">
        <property type="entry name" value="REJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="342"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="342"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4035284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="367" mass="40171" checksum="C72AAA3847A0BBC2" modified="2020-12-02" version="1" fragment="single">MKEITIGKTKVVTAVIYLSNQDEISYNPEVIITHDSSLQYEKITVLDLCYSACGIYKSSRVCCFKNCKDKIISDEKTILQSECSAFCSGELTFSWSLYCYDEINTPEPLNLSSLHEIPQSEFQDMVYNPINELDLAIKPYSLQPGKKYTLAFQASRPTGTLGELRTTLLVNSPPAGGTCAVSPSSGIALSTNFTFTCDGWTDPESPLTYEFSYGNNQTETLFHFRTIASGTKFSLVDWLPAGEESSNYTLTVTAKVKDSYGSSSIEQFMIQVRPLPEEELNATKLSGLFAEHLANGDTLEALSLASLLSSTMNTLESGSTKSPEQVREEMLTLLSGVEPQDMSSAMQVSGSLSHLVGGPDQMTPKAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZR5</accession>
    <name>A0A6S7JZR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A020390</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CRT-like transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022238">
        <property type="protein sequence ID" value="CAB4036628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZR5"/>
    <dbReference type="OrthoDB" id="264057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013936">
        <property type="entry name" value="CRT-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31326">
        <property type="entry name" value="PROTEIN CLT2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31326:SF1">
        <property type="entry name" value="PROTEIN CLT2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4036628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20437" checksum="CC9B364153E321C1" modified="2020-12-02" version="1" fragment="single">MELEQPNSINVSHQSKRKAVKVICFEVNLTIANVFFAFLSIAGQVGMKVTLPLWVDSTILRSSERHSSHYIQANTTGNLSNQTNPSTEDNGMYDPQVDAYFVLSFAIIASLVIFGAALLFIRLFRLDQLGEAERRFPHLQLFLAGFFNAMNGVFTVFASSGSRTAPYLQAILGNVMIPFIIALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2K0</accession>
    <name>A0A6S7K2K0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A018090</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025652">
        <property type="protein sequence ID" value="CAB4039615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2K0"/>
    <dbReference type="OrthoDB" id="5869280at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052035">
        <property type="entry name" value="ZnF_BED_domain_contain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481:SF10">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4039615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="456" mass="51254" checksum="F3C9BB28157D61E7" modified="2020-12-02" version="1" fragment="single">VRALLADDIPETLIDQWSQSCQSNMADVLSSNSSEEDDAVTNPIQLAINKGANITEPDRAAISRKRKIVKNSGKYKASRMKNHSKNDTCVWDRLKDFPGQHFVNENGQLRCNACSEIISIKKSSIEKHVQSKKHVNGIASIAKSKKENQTILECLKKQDIRDPGIEISKIDIMRPFLEKYARHRLTGASHMKDIIPTVLEKEREKIKAEIQNVQEVSMIFDGTARLAIVIRYVQENFKPTQRLICLEVLAKPLKGSKLAQRLMSCLAVNHNFGPNMVLATMRDGAAVNGAAIRQLSFFYPNIFDVTCFSHTIDNEKFSVQFHTIVRAFKVARLCCPVQVQQLKPDAAALEEFSNFPFVNDNTIANLANELPDYLAAVDGVTLGNEDEKVTWWAAQRETLPHWSALVKKLLLIQPSSAAAERVFSLLNSMSSQQGNSLEDYIEASVMVRYNSTQRKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2T5</accession>
    <name>A0A6S7K2T5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A017670</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023393">
        <property type="protein sequence ID" value="CAB4037711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2T5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="99"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="17"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4037711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="20219" checksum="55E9D51BC570FF20" modified="2020-12-02" version="1" fragment="single">MVTRQQSQRRDLEAQDEQQSGLSKETESKLVNLQSLLRKLAYFNRATDENLRVNSKEAIIRQQTTLKTKVSEAYGLIHELIQCLKIDAGESDETIDEWTSENNGRLREYEAAIEELNRRLLDEEKIQRESERQEKIRQEVEARALIRHEEEQAEFEKRAREEKFALSLEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K5F3</accession>
    <name>A0A6S7K5F3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027158">
        <property type="protein sequence ID" value="CAB4040715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K5F3"/>
    <dbReference type="OrthoDB" id="6134204at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14506" checksum="268655D36823AA11" modified="2020-12-02" version="1" fragment="single">METTSSAGSDDSHRVCVIHFEGKDGELRALTSETVNRILERRKEWLSLPSSYKAFTEVAKKSFEFIHETDNLNPKNIAKTYCFHPACYRSFTDKSKLDRAKTTLTNAADRKRVADDNTQTNCSRPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KF99</accession>
    <name>A0A6S7KF99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088154</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035193">
        <property type="protein sequence ID" value="CAB4044506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KF99"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="12628" checksum="1BEAF0CC4A629FC5" modified="2020-12-02" version="1" fragment="single">MVKFLTCSPENDPSDGPEASKDAASPTCDSVASHLMTDPLEGEPGTEDDVVDKESRASSITTEEDSPLEHGTSTETIDQEESVETNHADIASSESSVTQEEYVSTKGVRFTPPEAHKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGD2</accession>
    <name>A0A6S7KGD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">40S ribosomal SA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A088596</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033662">
        <property type="protein sequence ID" value="CAB4043967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGD2"/>
    <dbReference type="OrthoDB" id="414863at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10490">
        <property type="entry name" value="Glucose-6-phosphate isomerase like protein, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005707">
        <property type="entry name" value="Ribosomal_uS2_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023591">
        <property type="entry name" value="Ribosomal_uS2_flav_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11489">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN SA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52313">
        <property type="entry name" value="Ribosomal protein S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4043967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="9607" checksum="83DC75ED23812678" modified="2020-12-02" version="1" fragment="single">MSGGPAADVLQLKEEDVVKFLLSGTHLGSSNVDFQMQCYIYKKKPDGVYIFNLRKTWEKLVMAARIIVAIENPADVCVISARPYSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIE8</accession>
    <name>A0A6S7KIE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045973</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014614">
        <property type="protein sequence ID" value="CAB4027122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIE8"/>
    <dbReference type="OrthoDB" id="7351105at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17524" checksum="2C5D9A2BE8BDA84E" modified="2020-12-02" version="1">MSQDTVITKAVFEEILDKKLAEKLKPIDQMMSIMDNLKKSVKFLGDKFDSTIRKVEEIEVKCDANVKENKCLKMEVLRLSNIIRQHDEEINNFQQYSRRHCVEIAGLPVEPDEDTNALTIKVGSLMGVHIDEKIFQSATDCRIKLKMKPTAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KK28</accession>
    <name>A0A6S7KK28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041436</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039093">
        <property type="protein sequence ID" value="CAB4045377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KK28"/>
    <dbReference type="OrthoDB" id="6335872at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="521"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="542"/>
            <end position="556"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="556" mass="65717" checksum="5C4669413D72CE93" modified="2020-12-02" version="1">MSCWKFIKSNTKRVVASTDFNNISQKTLANLLRRNDLNIVEVELFRAVLKWSDFQCSKKDIEATRESRRSVIGDAIYDLRFLAMTQKEFAQNVATSGLLTAEEIVPIYNKFSGISSRDLKWKLSKKRYNISIPDNVPEVGEAVNPPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEAHLYRKPEIVQDKDNIPAEEYHFYRKPEIVRDKDNSPATEVHLYRKPVLESGKKKKWKSKGCAKKSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KN06</accession>
    <name>A0A6S7KN06_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Alpha-galactosidase</fullName>
            <ecNumber evidence="4">3.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A031621</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycosyl hydrolase 27 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.-" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020034629">
        <property type="protein sequence ID" value="CAB4044344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KN06"/>
    <dbReference type="OrthoDB" id="5795902at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14792">
        <property type="entry name" value="GH27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002241">
        <property type="entry name" value="Glyco_hydro_27"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11452:SF75">
        <property type="entry name" value="ALPHA-GALACTOSIDASE MEL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11452">
        <property type="entry name" value="ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16499">
        <property type="entry name" value="Melibiase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00740">
        <property type="entry name" value="GLHYDRLASE27"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3 4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4044344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19016" checksum="9B24705139847B08" modified="2020-12-02" version="1">MAASFSYLLCFLSFSLVGALNNGLGLTPQMGWNSWNHFACNINEQLISETIQALSTSQLSKVGYEYVNIDDCWAENRTSDGKIVVDYKAFPHGIAPLADLAHAQGLKFGVYSDAGYKTCAGRPGSLDHEVSDAYSYASWKVDYLKYDNCFTDLSKPEKRYPVMRDALNKVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KNV4</accession>
    <name>A0A6S7KNV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015641">
        <property type="protein sequence ID" value="CAB4028672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KNV4"/>
    <dbReference type="OrthoDB" id="6005352at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14383" checksum="681D5FED2DE8E8D7" modified="2020-12-02" version="1" fragment="single">MPSTSNQCVGVISSNDAYFSEVCKASAVVPVGLTFMAFAVQDFDDVKGLLKEDSFVLVERSLHNFGNSLCWVYRCSCDINRCNYLLSLNVYLQGTVEELNGRSKPCNHCIVVEKFIASVESVDGTLPESVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KZ32</accession>
    <name>A0A6S7KZ32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018814">
        <property type="protein sequence ID" value="CAB4032923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KZ32"/>
    <dbReference type="OrthoDB" id="410381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26608" checksum="6349E934F4120424" modified="2020-12-02" version="1">MSDMDKSESMVFGTAKRLAKDGNSSMCIQIGSDVIRSTTSYVYLGVKLDPTLNFGQYVHKTFKKTSSKLKMLKKIRSSLTVQSARMIYQSMIVPLMTCCDMVTLNLPGSWLSKFVNLENRAKKIIANGLSIENDDLNIRDFYSTRIFNAVMVVFKSLNGLSCEPFNDYFQIMSHQQNTRNNDYCLRLPKVKLEVARKGFYFQGAMAFNKLPLHVRQINSIVHFKSALKQMNSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LGW7</accession>
    <name>A0A6S7LGW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022100">
        <property type="protein sequence ID" value="CAB4036492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LGW7"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="81" mass="9538" checksum="82B9300689101B4F" modified="2020-12-02" version="1" fragment="single">NLLWNSHIQMITAKANKMLGLLKRTCPLLTETKIRRSLYLSLVKSKLCYGTEIWSPSNVSLKVKIERIQRRATRWILRSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LPI6</accession>
    <name>A0A6S7LPI6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022267">
        <property type="protein sequence ID" value="CAB4036659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LPI6"/>
    <dbReference type="OrthoDB" id="3263820at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19594" checksum="19BEF38046C0A9FE" modified="2020-12-02" version="1" fragment="single">TDSISDNSCLSDDSDQLENYSLKDKLVTWVNNFQVKHNAVDALLKLLKQSGHSELPSTARALLATPRLVSIGHKSEMEYVYFPLEKALLENFQSYPDSVDTLEIGLIPLFKSSQSSLWPVLCGIMNLTPVRIFPIALTYGKSKPKNLDFLHDTVRDLNIVLKQGLSCGSKVLKVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D661</accession>
    <name>A0A7D9D661_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lamin-L(I)-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A039123</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000079">
        <property type="protein sequence ID" value="CAB3977920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D661"/>
    <dbReference type="OrthoDB" id="102442at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005635">
        <property type="term" value="C:nuclear envelope"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1260">
        <property type="entry name" value="Lamin Tail domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1160">
        <property type="entry name" value="Vasodilator-stimulated phosphoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039008">
        <property type="entry name" value="IF_rod_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001322">
        <property type="entry name" value="Lamin_tail_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036415">
        <property type="entry name" value="Lamin_tail_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042840">
        <property type="entry name" value="LMNTD1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47012:SF3">
        <property type="entry name" value="LAMIN TAIL DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47012">
        <property type="entry name" value="LAMIN TAIL DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00038">
        <property type="entry name" value="Filament"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00932">
        <property type="entry name" value="LTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74853">
        <property type="entry name" value="Lamin A/C globular tail domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51841">
        <property type="entry name" value="LTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="426"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="599"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="653"/>
            <end position="739"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="24"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="173"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="266"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="429"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="655"/>
            <end position="667"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="668"/>
            <end position="680"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="681"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="700"/>
            <end position="711"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="739" mass="83224" checksum="ED89E31E0528E9EE" modified="2020-12-02" version="1">MSATMLSSHSMTPLVTQRLEKDALNNLTDRFAAYLSRVRQMREQSIHMDNINFVNTTKILEDEILSLKTMYERQLEELRNQLEDTGRERSSYQMMSAKNAAQLTDVSQRLAEERNLRKKTENELADAYRSLAEKEVQLQEARVVTTQQMNSHEDTKRDRHNVANNLMQTQHDLENESAVRANFEATAQNLRDKLKFDAEVHQKEIQDYRYRLAELERALLLADERLHEHNIVDENLSAMLAQLKLHSDEQLRRYKHESEYSYQSHMTQMQTQLDNESRNLTEVVEENIKLKAALEQMNTKYIGLESKCQTLDGQNRGLIQDLEMERQQSSNTIKNLEAKLREVQQALMAKIRELGLAYSMHTPIDLELGSLTALLEAEEKRLALSLSSNVPLTSYRSTILPSSLTAPKPAVTSTLTRNATSLPNVHAAKQTKVKQKLRPKTSPGNFSSATAPLARPITTSLPLSSSMSYIPNYVDYYSPTSSHTGHVKILEVNPSGKYVRLFNSSTFQDDEIGGYMIQQNISGSPVTVFRFPPRTKLKANSHVTVWSAASLAQHNPPSDFLWKDQHKWGTGPECTTIICKPNGQAVAWTTAAFPFGVPKPVSSRSEEGESPQYDDLNKSVSRSGNIGSLPYSLPTDHSLHPNAVQSRVTLAGNDGMTSNAQSRSQSRCPEEKDKPKRESNRSPMSKAGTSKNGGTIRVVPSTNFSSPSQRFSHGLAALNSQQRVSFKGPMPRPYTVRKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEN7</accession>
    <name>A0A7D9DEN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000606">
        <property type="protein sequence ID" value="CAB3983390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DEN7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="234" mass="26676" checksum="6AD0F82A4E7CB57D" modified="2020-12-02" version="1">MEDKGTEKEMNKNFGSEVKLQDIFELISGMSKKMDKLDIIQENMENIQTELKEVRKSIEYAHSKIDDLKKENEKKAQVQRETTECINKLEADNITLNSVIDLKMRSMCNNLLFYNMPEESDENTTAMIHKLLEEKLGGISSGPGALSGFNTDSLTTTPWVEIVGGLILRFECSGIRSESAFFRKDTFSLTFGFLLQHQSIEKTQYHGCLYRDYFNATNSISIVIAKTRSKILCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEX7</accession>
    <name>A0A7D9DEX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AN1-type zinc finger 2B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A057892</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000696">
        <property type="protein sequence ID" value="CAB3984096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DEX7"/>
    <dbReference type="OrthoDB" id="431929at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1110.10">
        <property type="entry name" value="AN1-like Zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035896">
        <property type="entry name" value="AN1-like_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057357">
        <property type="entry name" value="Znf-C2H2_ZFAND2A/B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14677">
        <property type="entry name" value="ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14677:SF20">
        <property type="entry name" value="ZINC FINGER AN1-TYPE CONTAINING 2A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25403">
        <property type="entry name" value="zf-C2H2_ZFAND2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118310">
        <property type="entry name" value="AN1-like Zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ZFAND2A/B-like C2H2 zinc finger" evidence="2">
        <location>
            <begin position="43"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="141"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3984096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="21898" checksum="D68B6E0E8008289A" modified="2020-12-02" version="1" fragment="single">TSLSTAYFRLSVRRSIYFISFYFLEHRTAESHQCPKNYGTDIHVPICPLCGQIVKKSRNQDANTQVSYHIQSGCKELVVSQKPKKEKRCTFKGCKRHEVLPFHCDQCQRQFCVSDDGDNGADDGADDGGGCGADDGADDGGGCGGGDDGGGDNGGDNGGDDGADDGGGCGVDDDDDGDRGGDDDGDDGGDDGGDDGAADDGDDGGCGGDDGDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFC9</accession>
    <name>A0A7D9DFC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Gliding motility-associated C-terminal domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A082864</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000669">
        <property type="protein sequence ID" value="CAB3983870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFC9"/>
    <dbReference type="OrthoDB" id="2324346at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007154">
        <property type="term" value="P:cell communication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030001">
        <property type="term" value="P:metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2030">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051171">
        <property type="entry name" value="CaCA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038081">
        <property type="entry name" value="CalX-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003644">
        <property type="entry name" value="Calx_beta"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11878:SF65">
        <property type="entry name" value="NA_CA-EXCHANGE PROTEIN, ISOFORM G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11878">
        <property type="entry name" value="SODIUM/CALCIUM EXCHANGER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03160">
        <property type="entry name" value="Calx-beta"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00237">
        <property type="entry name" value="Calx_beta"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141072">
        <property type="entry name" value="CalX-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3983870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="427" mass="46440" checksum="DFDBE6274799FE51" modified="2020-12-02" version="1" fragment="single">VSSHDITAIAGLDYTAISSQEITFTPNGPIEQDIVVQISNDTLQEGTESFLLAVSSQNVNTRIGDNVNTTVRILDNDVVSVDFVLTSANVLEQVSAALVEIEIQGARTLPVTVRVQSIDLNAESGSDYTAVDTEVTFQTFESTKSVPVPIINDNLIEIDEQFILRLSTDDNNVTINDNETRITIVDNDVAAIRFEQSSYTVNEANDNVTLHILQTGNLGIPVTAEVQLDAQTADGGTDFTVPITRTLTFSPRSNRANITINIIDDDIVEATETFFADLAGIGSKVILGSPQRTTVFIQDNDNSLARFLISTRILNEDARFLNMTIGLITVHPLQRDVSVSYSTEEGTAESPEDFSNVVGSTVIFRAGDSHGARQYGIVPIIDDQIVEAPESFIIRLISVDSGLIPTTFSSTTISIIDNDSTWLWDFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJI8</accession>
    <name>A0A7D9DJI8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000990">
        <property type="protein sequence ID" value="CAB3986270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJI8"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="120"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16318" checksum="D5BD2845F7530DE9" modified="2020-12-02" version="1">MEIHEVCPQFSSEMVKKIEKLATSSDQELMMLKTIVHEGWPTSIKEVPQVLKPYWCYRDEISIENGILMKGKRIIIPSTLQVEIVGKLHAAHQGAEKTKLRARTSVFWRKMNEDIDRISTNTNPTTTHPNRDTTSPLAYNCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DTI8</accession>
    <name>A0A7D9DTI8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081179</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001788">
        <property type="protein sequence ID" value="CAB3991086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DTI8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13331" checksum="F7D96AC6C1144C09" modified="2020-12-02" version="1">MDKTGDDRELRDRLPQRVWHGTSYKVEEVGGIDFKPELSRRVSHAGSLGRVSPNPNTRLRSRNGSKSSTSDAISTTNVVPSDDVTSTSDVINNEIISNSNVISANTSSRQPREAEASEMAIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EB09</accession>
    <name>A0A7D9EB09_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DUF4215 domain-containing, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A021242</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005196">
        <property type="protein sequence ID" value="CAB4005419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EB09"/>
    <dbReference type="OrthoDB" id="5958943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039:SF58">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039">
        <property type="entry name" value="FIBRILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 5" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4005419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="397" mass="43249" checksum="AC596BF73F5115C9" modified="2020-12-02" version="1" fragment="single">MSLGTLLTLFIITNWQFFQVEGNVGQEYIFYSNATHISYVSVDGGESTAILSAQSATLGYDEQNYRLWYYDTVGVTLHNANLDGSDLRTLSVLSNFGPFTVDAVNQSIYYLNNDDNSVKSIDYNGNLFPEIAALQSGSDFKDLQIDAYNRSLFLTTDRMNSRNLIRYSLPEDAELTIDDNITGIGTHLAVDTSNKIVYWIHFTDDTDYKIYKTTYDGQTSQIGPEQTGSLTTVDIGEGNGFFYILDSGTSEVRKYNKTTDTVDSTISLSPGAARMIVVADKDSCAVNNTCPANSTCTNIPGTIVCSCNTGFTGNQTFCQDINECTESPCGFNSNCTNIIGSFLCECQTGFEGNVTNCTDINECQTDPCDVNAACTNTNGSYSCNCNAGYEGNGTSCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EK36</accession>
    <name>A0A7D9EK36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-I Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007279">
        <property type="protein sequence ID" value="CAB4011830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EK36"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="15266" checksum="7F0D9C42A2124141" modified="2020-12-02" version="1">MGLHKAPFNSKTFSDYCEFMGIQHNNISHYPLHPQTNGLVDKQSSAYFFNSRKCWKQELFKFLRNYRVTPHTTTGKSPADLLFQTRLYRVRIPELSTSHSSDNKVRERDAEKKLQAKQYADRKSYVKCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EQ16</accession>
    <name>A0A7D9EQ16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076509</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008606">
        <property type="protein sequence ID" value="CAB4015155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EQ16"/>
    <dbReference type="OrthoDB" id="5983317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="27193" checksum="F50096DADBC74B2A" modified="2020-12-02" version="1" fragment="single">MAYSTTSEHKVEQEIKQMDPIHFINSLVLADSEHVPHSKGKLPMLASNKSEGYVDAGSLVSFTEKLTGQNKANVLNSTLLAQLAASKKHDRQTEADKWYKEYTNVLMNVGWVVQEMEPEFTEYISKQESFEISKVVVELLQSLVGDEEPLLISTLKKTIDALKNSSSETIKLFDSNSSSAKSANFQILSCTVNKTSQVNVAFVGSYFKAAMVGDDYLFVTYKDSDIKLNKSTDAFTLDEEVYGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ES80</accession>
    <name>A0A7D9ES80_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">E3 ubiquitin-protein ligase CHIP</fullName>
            <ecNumber evidence="2">2.3.2.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">RING-type E3 ubiquitin transferase CHIP</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A067066</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020008138">
        <property type="protein sequence ID" value="CAB4014069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ES80"/>
    <dbReference type="OrthoDB" id="629492at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:protein-folding chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071218">
        <property type="term" value="P:cellular response to misfolded protein"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045862">
        <property type="term" value="P:positive regulation of proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000209">
        <property type="term" value="P:protein polyubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd16654">
        <property type="entry name" value="RING-Ubox_CHIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000124">
        <property type="entry name" value="STIP1 homology and U box-containing protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045202">
        <property type="entry name" value="CHIP_RING-Ubox"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041312">
        <property type="entry name" value="CHIP_TPR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46803">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE CHIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46803:SF2">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE CHIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18391">
        <property type="entry name" value="CHIP_TPR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13414">
        <property type="entry name" value="TPR_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04564">
        <property type="entry name" value="U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00504">
        <property type="entry name" value="Ubox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51698">
        <property type="entry name" value="U_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0436">Ligase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="U-box" evidence="9">
        <location>
            <begin position="204"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00044534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00044543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4014069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="282" mass="32951" checksum="BB0734C8E3A04AA0" modified="2020-12-02" version="1">MKDFKEMSTIQIKDRGNAHFAKKQYELAIDCYSKAITKNPNMATLFTNRALCYLKLKKWDQASSDCRHALELDNNIVKGYYFLGQALLEQQLYDESITYLQKALDTSKEQKRSFGDDITFSLRQAQKKRFQIQEKRRIQQEIGLQTYLTNLITQDVERKSSALKSSSEEENQSEKDRIQAEGEKHIAKVNELFANVDERRKQREVPDYLCGKISFEIMKDPVITPSGITYDRKDIEEHLQRVGHFDPVTRTELKQGQLIPNLAMKEVVDTFVSENEWVVMEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC13</accession>
    <name>A0A7D9HC13_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">60S ribosome subunit biogenesis protein NIP7 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A002724</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Interacts with pre-ribosome complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
            <location evidence="2">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the NIP7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000025">
        <property type="protein sequence ID" value="CAB3977020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC13"/>
    <dbReference type="OrthoDB" id="27490at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042255">
        <property type="term" value="P:ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd21146">
        <property type="entry name" value="Nip7_N_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd21151">
        <property type="entry name" value="PUA_Nip7-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.130.10:FF:000002">
        <property type="entry name" value="60S ribosome subunit biogenesis protein NIP7 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.450.220:FF:000001">
        <property type="entry name" value="60S ribosome subunit biogenesis protein NIP7 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="entry name" value="PUA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040598">
        <property type="entry name" value="NIP7_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055359">
        <property type="entry name" value="Nip7_N_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002478">
        <property type="entry name" value="PUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016686">
        <property type="entry name" value="Ribosomal_synth_fac_NIP7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005155">
        <property type="entry name" value="UPF0113_PUA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23415">
        <property type="entry name" value="CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17833">
        <property type="entry name" value="pre-PUA_NIP7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03657">
        <property type="entry name" value="UPF0113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017190">
        <property type="entry name" value="Rbsml_synth_fac_NIP7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00359">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88802">
        <property type="entry name" value="Pre-PUA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="PUA domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50890">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="6 8" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00018162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR017190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3977020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20679" checksum="562C102E13B1CB36" modified="2020-12-02" version="1">MRPLIEEETKLVFEKLAKYIGENLKLLIERPDGNYCFRLHRDRVYYVREDIMRKATNVARENLVSLGTCFGKMTKSGKFRLHITALEYLAPYAKFKIWLKPGAEQSFLYGNHVAKSGLGRITENTEQYQGVVVYSMNDLPLGFGVAARSTQDCRRANPTDIICFHQADNGEYIRSEDTLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD62</accession>
    <name>A0A7D9HD62_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Kelch 17</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055424</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000233">
        <property type="protein sequence ID" value="CAB3979831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD62"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.420:FF:000001">
        <property type="entry name" value="Kelch-like family member 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017096">
        <property type="entry name" value="BTB-kelch_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412">
        <property type="entry name" value="KELCH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412:SF419">
        <property type="entry name" value="KELCH-LIKE PROTEIN 20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037037">
        <property type="entry name" value="Kelch-like_protein_gigaxonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="575" mass="64654" checksum="77DF0D1B603074AF" modified="2020-12-02" version="1">MAVPLVDDSICEFNDKNAFQDAFKTMLDFRREAIFSDVIICSDDNKEFNCHKLILASASPYFRAMFLADMKESQQPRIKIKGLDSSALEQLLEFCYTATVTITSENVQQLLIASGMLQFPKIQDSCMEFLLNNLHESNCIGIWKLAEVIQRNQKTLEKLETYIKTNFSFVAKHEEFLDLTAEQLLKFLKSDNLNISTENDLSTAIIRWVRLDPQERSAHLEDLMKHVRFSQITRRHLTDVILNEELILDNMFCRQLIFDAIRYHLVPETRNGSVSAVDGRQRERVTRFIYLLGGEECGSIVNNVECYDCSSGVWHELTPMIIPRKFVGSAILDDQLYAVGGINDQYGDLVTVEACNLSTNQWTSLASLQECKGSTAIAVLDGWLYAAGGSDNGVAIKTAERYDSLANTWLPVPNMNLPRSHFCLQPLGGKLYAIGGYCGTCAIPHVEYFDPLANTWTEIASMNKPRMNHGSANYADKVYVVGGANSYGVLNSVEVLDPEQNHWCFIRNRFNPRSGLSLGIVKTGQDNESCLWILGGHDHKNRDFSTALKLRVSDLSFQGEISLPRTCVFAGHASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKE4</accession>
    <name>A0A7D9HKE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083431</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001128">
        <property type="protein sequence ID" value="CAB3987157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKE4"/>
    <dbReference type="OrthoDB" id="5989205at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000063">
        <property type="entry name" value="Zinc knuckle domaincontaining protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="876"/>
            <end position="909"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="885"/>
            <end position="894"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="966" mass="109643" checksum="A501B01D5D793A34" modified="2020-12-02" version="1" fragment="single">MIDSGASVNILDDATFNKITRNKGISLEQTNHKIYSYGSLRPLPLKGVIKTNISTDSKHLSSQFHVVHGNSGNLLSYTTACQLNLLKVTINSTTHHIPSTNQCPPEFECFFSGIGKLTGKTVKLHIDPDVSPEQQPHRRIPFHVRSDVEKELKWFEELDIIEKVDEPTPWISPIVVVPKKSGEVRICIDMREANQAVKREKHLIPTIDDLVADLNGAAVFTTLDLSSGYHQLELAEESRHITTFSTHLGLRRYKRLLFGINAASEIFKNTIEELLTGLPGCKNISDDIIVFGKDQATHDANLRQVLERLKSHNLRLNKEKCHFSRSEVIFYGHIFSTEGLRPDHKKVEAIQNATPPRSSSEVKSLLGMAQYLSRYIPGYADITALLRGLTKDYATWKWEEIEQAALDKLKKAFTDNQVMSYFDPHQATKVIVDASPVGLGALLVQNDKVICCLMSKLDTLRLRKNCSHHKVTSARIDRWKLRLMPYNYYLVYKPGKDEKNTADFLSRHPNCSEPQPESVAEEYVNYVCANAVPTAMTLQEIQLETSVDDTMQMVIQAIETNNWSDPSTTEYKKVSDELSVHKGIILRGHRIVMPTSLRRRTIHLAHIGHQGIIKTKRLLRSKVWFPNIDKMVEETIQNCLPCQVATSGNHPPPEPLKMTQLPSEPWKEVAMDFLGPFPTGEYFLVVIDAFSRFPEVEVLTTVFAKAVLPKLNAIFSRQGLPEVLKSDNGPPFNAPEFESYAKHCGFTHRNITPYWPQANGEAERFMRTLQKCIRAAIIEKKNWKQAMNQFLLNYRATPHSTTNISPSESLNNRKIKTMLPEMPSTSKPEQKAMAEYDPKENKFSVPYNPQPFVVEKKKGTMVTAKNVSKVVTRISSQFKVPRPSNPQEQKTLQQRPKRNHISQRNSDSVDRYLIPGQWNEKKQNHGDEHLDCCATECGTTFTTSCKDRLCGEKGEHITHLIKKAEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HLC0</accession>
    <name>A0A7D9HLC0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Very-long-chain 3-oxoacyl- reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A066731</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001247">
        <property type="protein sequence ID" value="CAB3987877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HLC0"/>
    <dbReference type="OrthoDB" id="5545019at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05356">
        <property type="entry name" value="17beta-HSD1_like_SDR_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000137">
        <property type="entry name" value="Hydroxysteroid (17-beta) dehydrogenase 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051019">
        <property type="entry name" value="VLCFA-Steroid_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43899">
        <property type="entry name" value="RH59310P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43899:SF13">
        <property type="entry name" value="RH59310P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000126">
        <property type="entry name" value="11-beta-HSD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3987877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="34249" checksum="F184E32B756177AB" modified="2020-12-02" version="1">MSFAQVTCLVGTLYVFYLSLKLLKLVLEVVRTTLLGGTIDFKRLGEWAVVTGSTDGIGKEYAKQLAAKGLNIILMSRNKEKLEAVASEIESEYKVKTKIIQVDFSGGHEIYEPIGKELEGFEIGVLVNNVGASVPYPQHLHELPIENVWTQVNVNVMSTAMLTRLIIPSMVERNKGVVINVASGAGAFVVPLLGPYSGTKAFMDKFSESLHIEYASKGIITQSVLPLIVATKMSGVKRSGFFSPFPDSFVGSVLKKVGAARRCFGYWPHELQAFVMYLLPDWLFAKMTMKFNTKLRDKALKKKKEKKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HLU4</accession>
    <name>A0A7D9HLU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000284</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000890">
        <property type="protein sequence ID" value="CAB3985603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HLU4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="22173" checksum="685055402BF14D6D" modified="2020-12-02" version="1">MLKQYMPGITISMKSQMLPSILWSFLLPQMLQTEKVQTSRVVRQTTTSHGRSRSGYKAVVAGENLVKKSDISVSRALKFVKLCCDQSAEAEDDVLSSTNFIDYILGCPQLLTNFVDSLDTKWGIGQSGQIAYVTSISDLLDFRKFNSPPSSVLQNFAVTEVYVKRARKCLAKDMRSNWTTDLYIETLESHRSWASLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNT3</accession>
    <name>A0A7D9HNT3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="6">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">DNA 3'-5' helicase BLM</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A005831</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020001126">
        <property type="protein sequence ID" value="CAB3987144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNT3"/>
    <dbReference type="OrthoDB" id="5975502at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="109"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00044542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3987144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="493" mass="56386" checksum="5AA0BC2EB3FCD69C" modified="2020-12-02" version="1">MHRRYLAPPFPPTSVCNWLKVYLFIIFTRGLSGNKKVPFRKWFGCLGEIRSLIPKNNKIIIVTATATKATKSQILESLDITADQLHTVEQNPNRINLMYILSYMDKQRSLKDVFIKLITELRTVLCKTERTLIYCQTRKQCSLLFRMFEINLGKNMYNGAALPPNRLVEMFHAGTPQSVKDHVIKNMTATESHLRVLIATVAFGMGVNCKEVRRAIHFGPSKNLEQYVQESGRAGRDGKSSTCTILYNGLLAAYCEKDMKEFLQSDRCRRHELMRNFSDYACVEVNPAHNCCDVCASNCDCNSSECRMNWCLLTPDSHLEIDDLCMATSNDDNPQTRHVNEHHKQELIQRLLEFQKKLANRLDAKKYVSCPNVLMEFNKFHIKQVVNNCHLLFCLDDVLEHIEIWRHQYACVILQVISEVFGDIEYACSDADLSTENISMLDESINSVWNELREDSSFNSMFDSLNVTADDTTDDCNDILAPPFPPTSVCDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQT4</accession>
    <name>A0A7D9HQT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Octopamine receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A061485</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001204">
        <property type="protein sequence ID" value="CAB3987625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQT4"/>
    <dbReference type="OrthoDB" id="6358729at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030425">
        <property type="term" value="C:dendrite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045202">
        <property type="term" value="C:synapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004993">
        <property type="term" value="F:G protein-coupled serotonin receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030594">
        <property type="term" value="F:neurotransmitter receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007268">
        <property type="term" value="P:chemical synaptic transmission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007187">
        <property type="term" value="P:G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14967">
        <property type="entry name" value="7tmA_amine_R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24247">
        <property type="entry name" value="5-HYDROXYTRYPTAMINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24247:SF202">
        <property type="entry name" value="5-HYDROXYTRYPTAMINE RECEPTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3987625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="47080" checksum="6A335F36E687C28A" modified="2020-12-02" version="1">MNLTIAPTYPNLSSNITTTTNATLGANNPAMNNIDGFTTSGIAKAFSLALLIFIAITGNLVVCISFTMFRNLRSITHYFLVSLSISDILVAICVMPVYLVYQLHTPRPYFTPDKITLLTFWQIMDFFLCLTSVWTLAAIGVERNLAISRPFYYTKWISPIRVYISMACLWMFSLTISVTTELNPFGQKSHLSVFIVSTSYFLPFVIILIMYAQIWLVARRQTRRLRQDGALATDLKAIKTIGIVIGTFFVCYTPNMILLIWFHFDVQPAPNLDIVTTAKWLVYFNSCANPIIYSCFNKTYRSGFKRLFQTIVKKLHELRSRAGDRKARKLQRSRLSLNITMRSSAGSLLDSAKLPTGLSRGSIQSRGSNQSVSQNVVNVVDTNDQIVNVVDTNEQISSKPSEEPTCEPAENMVQDTEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWL5</accession>
    <name>A0A7D9HWL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059603</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002085">
        <property type="protein sequence ID" value="CAB3992605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWL5"/>
    <dbReference type="OrthoDB" id="413103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18495" checksum="D6F3CBA9F480DC8F" modified="2020-12-02" version="1">MSKAFDKVHLYGISGKLLRWFESYLINRNRRVAVLGATSSARHVRSSTGFILGPILFLLYANDLPDVVEHSKIASIANDTKLFKKIDSTTDAISLQSDLSSLENWSTSSGLVFNQNKCKCKCQRVTRKKNPIKHEYKINNKYLVVTAKEKDLGIWITDTLNWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWS8</accession>
    <name>A0A7D9HWS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002629">
        <property type="protein sequence ID" value="CAB3995261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWS8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11042" checksum="B5576AD4197B6F54" modified="2020-12-02" version="1" fragment="single">DLELTKRNYARAEDMCHQGSGDWEKIVLRGPAKKGSEMLEMKNLVIWHKTGKCELKKKNSKVADLKLENKVKCLPITHDVIGGEMDTITVGCKAVFNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBG9</accession>
    <name>A0A7D9IBG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003422</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004678">
        <property type="protein sequence ID" value="CAB4003614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBG9"/>
    <dbReference type="OrthoDB" id="24630at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.150">
        <property type="entry name" value="Hypothetical protein ph0010, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023473">
        <property type="entry name" value="AMMECR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036071">
        <property type="entry name" value="AMMECR1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002733">
        <property type="entry name" value="AMMECR1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13016:SF0">
        <property type="entry name" value="AMME SYNDROME CANDIDATE GENE 1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13016">
        <property type="entry name" value="AMMECR1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01871">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143447">
        <property type="entry name" value="AMMECR1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51112">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11379" checksum="ED06808FFB5932D8" modified="2020-12-02" version="1" fragment="single">SLLTNFEEGDNCFDWEIGIHGIRIEFYNEKGNKRTATYLPEVAREQGWTKVQAIDSLLRKGGFKGTITPEIRNSTKLVRYRSEKVSVHYNEYIASKQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDI5</accession>
    <name>A0A7D9IDI5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005498">
        <property type="protein sequence ID" value="CAB4006398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDI5"/>
    <dbReference type="OrthoDB" id="5989324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="382" mass="44056" checksum="992ABEBF9B18D789" modified="2020-12-02" version="1">MLPVLNVPSLSTDAPVIVWLNSRLVKIIPVYMNQNKEEYYDFCDICGAQLYGIEKCNDAIHRREEIKNSKLFSAEEKNCLSLIKTDLQGSVEYRNFKNFNIPWVSREVKEKLFKRDALKRKAIKTNKEEDWRLYKSSRNDANTALCSAKRDYYANKFTNNKQNPKYAWRTINDIVGRINEIKLPGKTVTSTDELVDIFNDHFSNIGPKLAESIPNDNDVSFRDFITQQKSKTKNSFSFRPVSVTLVYTLLVNLSTTKATGMDKISAKILQVAAPVIAPSLTEIFNMSIDSDQFPSDWKAARVIPLFKKGQRSMLDNYRPISILPVVSKLVERIMYDQMYEYLNQNNLFSKHHLVSDLIIPQLLHYWIVRTNGIPTWTVGCIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDP0</accession>
    <name>A0A7D9IDP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-gulonolactone oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005972</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005934">
        <property type="protein sequence ID" value="CAB4007851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDP0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003885">
        <property type="term" value="F:D-arabinono-1,4-lactone oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="entry name" value="Vanillyl-alcohol Oxidase, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007173">
        <property type="entry name" value="ALO_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010031">
        <property type="entry name" value="FAD_lactone_oxidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43762">
        <property type="entry name" value="L-GULONOLACTONE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43762:SF8">
        <property type="entry name" value="L-GULONOLACTONE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04030">
        <property type="entry name" value="ALO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="188" mass="22615" checksum="FD0EE1687E4A1317" modified="2020-12-02" version="1">MYWLSTFLPSLVKYINRYHFSWLKSQPEEIIDEAEKIFTFDCLFAQYVNEWAIPREKTAYVMKRLKKWLDESGFFAHMPVEVRFVAKDDIYMSPAFGRDVCFIGIIMFRPYRKFVPHEDFWNFYEDLMFSVGGRPHWAKAHKLGSQALRKIYPNFDDFRNVCSKLDPGRLFVNDYLERTLFPPEKVMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJJ4</accession>
    <name>A0A7D9IJJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056341</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006386">
        <property type="protein sequence ID" value="CAB4009246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJJ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="22363" checksum="E6C44013DB381E3F" modified="2020-12-02" version="1" fragment="single">LKLRLSRSVWDAVYEAEDVDDKVSSFNGVISQALDGCMPLKSIRLHPTDKPWMTPNIKAKIKLRQRAFTRGNMPQYNLLSAQVEDMIRKAKSNYYQNKAKTFRTSDPAKWYKAIYNLSGVSSQHEGLTVNSMGSEAALIAEKIQISFTEPWKALIITTSILQLDEVESLLKNYPPPLPSIGQIKSVLNHLNHSKAMGAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPI6</accession>
    <name>A0A7D9IPI6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ankyrin repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A005308</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008791">
        <property type="protein sequence ID" value="CAB4015640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPI6"/>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000976">
        <property type="term" value="F:transcription cis-regulatory region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050663">
        <property type="entry name" value="Ankyrin-SOCS_Box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24193:SF121">
        <property type="entry name" value="ADA2A-CONTAINING COMPLEX COMPONENT 3, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24193">
        <property type="entry name" value="ANKYRIN REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="692" mass="77099" checksum="6F35155C1E655F54" modified="2020-12-02" version="1">MSLGDLECLFADFGLEGARNFFAYPPLLVFLETLDRIKDLEKTTQRLSEIQRHEHRAFVFLHVSQFAIDEYGRTPLHYVGQFGIFQHVVGYHAVVNNNDCDGRTALHLACIPSDRTICGLYGFVIPRTEKLKRTCEILVEIGANINALDSEGRTPLHYAAMYNQDLVPALISLKANIFSIDENGKTPLDYGFKHGKTTAIKNLLENYANQKTDEKSLLMKDINCVDEEGRNILHCAAGVSNPAVITKLLDAGVSLNVVDKNGKFALDYAFARRDFQISVVLLDRILEENKQKPDQLPVAMTQYLRMKDDNNRTMLHHSVMHSKQNVLDTLLKHGVSLNDLDDLDKSALCYATEQENTVAAMKLIEAGASVEGPAVSYHFMRYDGWKSKYLHYAAEWGYIVAAMKLIKAGASVKGKDNEGRTVLHLAVQHGNEKLLDLLIKNKASVNDTDNRGKSVLHYAIERGNTVAAMKLLEAGANVEGKDKEGRTVLHLAAQHGTDGREDLLDQLLKNNATLNDLDLGGKTALHYALENALETGNPTFAFKLCEAGAKAPLVKDSLGMTLLHYAVQDNKLDDLDILLKCKVHLNDYDGKGKAALHHAENSRNVVAIEKLLEAGADINVQTTEEKFTPLHLAAMRRHDEIIELLLDHNANPGVEDYIGRTALKYARNSHRHTDIIKRMEEAIANLSLELRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IV22</accession>
    <name>A0A7D9IV22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008103">
        <property type="protein sequence ID" value="CAB4013986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IV22"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31252" checksum="AEBE90ED04A7F967" modified="2020-12-02" version="1">MENFDSEKVEKPTAEVSSGQSEEDDLFAEVDIDGSNENDDLPAKSSSFLWQLNQSLHTMVGSIVEKSLKRLHEDKTPPAKRKKPRLATETTGPEEVEENQSSDEDTLCGPSNADSAESSQTTSARLEQDTDNCNDSLLSEIENGFSQEDDMGPAITEKLATIINKRWSEKLSDQKLKEKWDQYPHPDNCDRHVAPRINPEIWARIDHTAKQLDLRASTNQSNLAKAGVVLAKSTDKLLSLYQKDSKPLKYYKYEIIFSDQNYALPEWSNIETHCQMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6Z0</accession>
    <name>A0A7D9J6Z0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Furin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A024182</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012357">
        <property type="protein sequence ID" value="CAB4023181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6Z0"/>
    <dbReference type="OrthoDB" id="10072345at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="111"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="275"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="157"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="215"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="294"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="335"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="376"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="562" mass="63783" checksum="88A86B3050911424" modified="2020-12-02" version="1">MDVCTASSDNELSNGCDIEAKHKNNAVNYLIVNEKGKFKWIGSFEELKILMNELTEKDLKWTSPGGHCKLLELDEAEIRWYSNNKSLTISGKASDDIKSQLRILADLSRADTEATDEGNDNGKDAVIDNTNGEEPGGANNNVKDDVVDSNMTNDRFRETLNSTVRELEVRLERKINELASEINETRIDLYNEKMIRGENEVRNKSINNEQSSNLKGFLAKQNDSLKKENDQLKEQINNYKCITSDLNQKVKDLDNERSSLITVIKILQSEQEQHKTEALSSWNVVNRHKKSTKSRNALEQNPSGKHQRQDLQLQNQFIDLSDCESDGNESNTDISAKHGDKPRQSGDKPNQRRSGQNSRKIERRQQSKGNIQDRQSNLDERKDKSEPKATKQRQPNIVILGDSMLKHLNPRRIQQGIDQKISIKTFPGAGVDEMTHYVKPTLQKKPKHIILHIGTNDLQTKSPDALIKAVTKLGEAITQEISGIELTLSEVITRTDDLQLADKVNIYNNKLDNLCTERNWGFITHKSITKTHLNSYGLHLNQRGTTALARNIKQFLKNQSLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J890</accession>
    <name>A0A7D9J890_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057678</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012840">
        <property type="protein sequence ID" value="CAB4024101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J890"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15856" checksum="8FA4D6D21BEA1193" modified="2020-12-02" version="1" fragment="single">MAAHRVHDSSTPFAMAAHVTFAMVAQRSQWQHTVHDSSTPFTMVAQRSQWQHTVHHGSTTFTMAAHRSRWQHNVHAMATRRSRWQHTVHDGSTTFTMAAQCSQCQHNVHDGSTPFTMVAQRSQWQHNAPNASTTFTMAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JAE1</accession>
    <name>A0A7D9JAE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084200</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013399">
        <property type="protein sequence ID" value="CAB4025078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JAE1"/>
    <dbReference type="OrthoDB" id="6152624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="36929" checksum="92C300D2AD250697" modified="2020-12-02" version="1">MQQIRIRDRLKSRSKSNILARVMYKRVRNHVVKLINNAKSNYFIQQIMENKDNVKNLWKVLKRVVPITPLQLQPQQIEVDATGLDGISIRLLKAALPAISSSLVNIYNASITSGIFPDEFKRAKVTPCHKKESTHERGNFRPISVLSMLSKPLERHVSLSFCEHLRSHDLLYLNQSGFRSHHSCETALINITDKWLKAMDDGELIGAVFMDFSKAFDLVNHDVLLRKLAKYHISQQALQWFTSYLDGRSQQCSVLGSLSSSLMLERGVPQGSILGPILFSIYINDLPMSLGEANADIYADDTTLWSSSKSCDEIQQTLQNALDITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JB59</accession>
    <name>A0A7D9JB59_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF3456 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A067291</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the canopy family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013914">
        <property type="protein sequence ID" value="CAB4025948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JB59"/>
    <dbReference type="OrthoDB" id="6020060at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021852">
        <property type="entry name" value="DUF3456"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15382:SF8">
        <property type="entry name" value="CANOPY B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15382">
        <property type="entry name" value="CTG4A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11938">
        <property type="entry name" value="DUF3456"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="DUF3456" evidence="3">
        <location>
            <begin position="4"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4025948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="18236" checksum="0981423FAD31E6D2" modified="2020-12-02" version="1">MVIWHVFDELCDEMKKYNIDKKTPFRYRRGVKSYLRRQAVEMTAHSPNVHWVWNVEAVDIDDPTGEIRRLKKQCYTMLVTYQDDIRRWFYTSQNSNPLKWICANKVLTRRDSQGCLWIKDKYMEELVKHDETTAREETSESSHKEKHYEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRB4</accession>
    <name>A0A7D9JRB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019703">
        <property type="protein sequence ID" value="CAB4033965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRB4"/>
    <dbReference type="OrthoDB" id="7614033at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="394" mass="44552" checksum="D8B851F04E8624C2" modified="2020-12-02" version="1">MQAEYESLMDNNTWTLVDEPEDQQVLPGKWVYKVKYRANGQVDKLKARYVAKGYAQIEGLDFFDTYAPTCKPETFRILLATASRKDLYLGQMDVKSAYLHSKIEEEIYLEQPEGFVKKANSGQKLVCKLNKSIYGLKQAAKNWYEALTSLLLKKGFKRSCNDYCLFVRKEENGTFSYVLVWVDDIVVAGATEEAINEIKSMLNANPAIAQQDYKFNMSDCKVVATPGEVNLKLVKSNEGKKLVDPKLYRSLVGSLLFIGKQTRPDILNIVNQLSRFLDKPDESHWKAAKRVLRYLKGTTDLRLTFLKNSSCDIVGDSDADWSGDLNDRKSTTGYYFKFEGNGGAISWEVKKQATFALSTAEAEYQAMAAAAQEAIYLRALLKDFGFPMEKATDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JVH5</accession>
    <name>A0A7D9JVH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004437</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021429">
        <property type="protein sequence ID" value="CAB4035849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JVH5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="15031" checksum="DCEF4E907492D1C4" modified="2020-12-02" version="1">MISSSHLNKIFLTLAIALTFSAIGSALICNVCSYTSAQPKAQQVCGNNTVNCATGYCFSSTYTTDTDLVVTVRSCDDPSDRSCPDADDTCEKRTSKFNLKSCAGMCCTTDNCNNYTPSSATSIMVAKFSLCVMVIVGFFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JXU9</accession>
    <name>A0A7D9JXU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024969</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023563">
        <property type="protein sequence ID" value="CAB4037882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JXU9"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="376"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="380"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="394"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="440" mass="51003" checksum="EB9F63289A1DB2DD" modified="2020-12-02" version="1">MAFNRLSRRTIQSNPNVKVLDLKACEKIKTELTLNEHDGIILRGSRIVLPESLRLKAVQIAHEGHQGLVKTKQLLREKVWYPGIDKLAKHTVDTCLLCQANGPNSHQEPLRMTTLPPQPWHTVNIDFCGPFLGGSYLLVIIDAYSRFPEVEIVSSTSAKSTILKLERIFATHGIPKVLKSDNGPPFQSHEFSLYLKELGIKHKPSSPLWPQGNGQAENFMKPLVKAVKSAHHENKDWKREMFKFLLNYRATPHSTTGKSPSELLYNRKIQTKLPQVTVENDSSLHQEVKERDERFKKNQKEYADSKRRVKCADIKKSDLVLVRQPKANKMSTKYDPIPYEVTNRRGNRITAIRNGKYITRNISFFKKYHPRHGRSLESTEIMDEENYSSDEDVHEEHEQYDGLRQNDRPRQNNGQRQDDGPRYPARERQRVYRYGNNIYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K2J5</accession>
    <name>A0A7D9K2J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026031">
        <property type="protein sequence ID" value="CAB4039902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K2J5"/>
    <dbReference type="OrthoDB" id="6015585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="77" mass="8634" checksum="5CB9D07673E96881" modified="2020-12-02" version="1" fragment="single">MSEYDDWGSELLRKECAGREIVINTKDGVKTLAARLGASDKAVERVQTGDETVEFETDRGVFEPSKTRTKKNCRRPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1M0</accession>
    <name>A0A7D9L1M0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065379</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012310">
        <property type="protein sequence ID" value="CAB4023089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1M0"/>
    <dbReference type="OrthoDB" id="7474049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="789"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="789" mass="90161" checksum="6465F225BEA2E76A" modified="2020-12-02" version="1" fragment="single">MPDAVVTIHNYSIFRRDRSWEGRDMRAKGGVAIYVRNNLKVIDIYRSSLYELIGITLLLPTGNRMSIYGLYHPPRHNYLESDLLDYLINISDDVLDKYPDTVIVCGGDLNSLDIKHLEELSGWDAMVDFSTRGNACLDNCLTNRIDLFSKCYPFHMLTKTDHMGVILPAGTKLKPMRRKVEFRDCRKHRKEDFHKALAEEDWEDVSQSTNVNDSVNCLERKIKDHMNKCMPTKTVSISSRDPYWMSPLIKSLLKSKSRIARSQKDRLSLINKRISDVICQNRRNFRALVGSRTWWRKTNDISQRNASSSRVTLDNASLTRLNRYFGELCHDDSYVEPTLLIIGDEVDIPSFTEQQVDLPKEDGDFRGINITPVIARTFEKLVYNSQNKVLSFLDRANCKAVRLFSMDFSKAFDSVKHSLLSEKLKTVPLNPYIINWYLNFLKNRKQRVVCNDFCGEWMDVNKGTTQGSVSGPYLFNIFLNDLEVDIDGENALFKYADDSNIIVPVWSEGPDTSTDTVGQFLSWSDDNFMTCNPGKCKELIIRKKGYNDQLDNVYNIPQCKELPILGTTFQDNLKFTSHVRDVLSEKPLVGLGRTRENPTKACIWHSPSSGSVERALRSDVLIAKTEKPIFYNFQMICSISPSSCSVARAARNPLWRLAEALGNTGESPSGPQSFSIYFSLLSYNNSKPWQVFFEELRSVRITSHAVNKLFRMMHMSSGHLVVRKQACHACHLIWDLPHPLSPSVPQADVFVLFPYLSPKGWRAGEECPPPPSVIDGISFTARYHILENK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L367</accession>
    <name>A0A7D9L367_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001467</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012846">
        <property type="protein sequence ID" value="CAB4024108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L367"/>
    <dbReference type="OrthoDB" id="5985347at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="458" mass="52131" checksum="A433F33940F70F0E" modified="2020-12-02" version="1" fragment="single">RGLNPKRFWSLFKFNNKTRNIPQKLSLKVTETKRTSAGNPADIAALFNNYFTSIFTTDPNIENYSSDALPYQYNNTIIEDITLSEADVFSVLHNLDINKAQGPDGIPARLLKETARQIAPSLTVLYNKSLNTDVLPRDWKLANVVPVHKKDNKEHVENYRPISLLSLISKALERCVFNKIKDHVFEQINNGQHGFVPRKYCVTKLIEVFEYIGRELDLGKQVDVIYLDMSKAFDRVSHIQLLKRLRDFGFGGNILNWFRSYLKDRRQQTTVLGATSSALPVTSGVPQGSILGPLLFLLYQNNLLNSINHSKITTFADDTKIYKVINVNADASAMENDLANFQTSSANANLLLNTDKCKTLRITRKRNKIDHIYKLQDSALKTTDCERDFGVWTSSTLTWSKQVLHQCAQANKSLGYIRRSTIKIKTISVRRTLYLTLVRSHLAYASQVWAPQTVDLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8U9</accession>
    <name>A0A7D9L8U9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014840">
        <property type="protein sequence ID" value="CAB4027503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8U9"/>
    <dbReference type="OrthoDB" id="5988188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19908" checksum="7AE46D3547014AFA" modified="2020-12-02" version="1">MSKTRSKVEGEVCHVNLDQNIESFMKSDDFRAVLSTAINVAVEAAIKCLKNEFVELIDVRMKALEDTNTRLKREKETEDCYDEVVKFCDRELGMANERKEIDRAHRIGKAQHDDGCPRAIIIKLKSFHSKLSILKNKRRLQEKSLYVNEDLTKINQQLLMYAKEKCRDTASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LA23</accession>
    <name>A0A7D9LA23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047431</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016219">
        <property type="protein sequence ID" value="CAB4029512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LA23"/>
    <dbReference type="OrthoDB" id="5966261at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="472"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="506"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="576"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="576" mass="66075" checksum="47073D7A2190DB72" modified="2020-12-02" version="1" fragment="single">ALGFYSLMYHIRVIELLTQVTKSWDILSTSFSRNNNFDLKNTFSLIISSRDSRIWRIFCLAKEPHSLMHVQIMLHGYEFFGELKDGIAKQLGQLNKIRTEWEPPTWPPSIQMGVTAGIFLASILLKEIRYLVPCPGLFYTPPIDFPLSSTPPVVSDPHCHGVLNKTTMLQYHLHENSTELLQCCHFQCHSHSVCLCTSMHENQRSGNYRCSVCAEFQVKQQNQPMQSHDVPDRPWSRVSTDLFTLGNKDYVVLVNSYSDFLEVGKLKGTTSSAIIEFLKEQFSRHGIPDVLVSDNGPQYTSREFTDFTTEWEIKHVTSSPYHARSNGKSEWGVKIAKNLFKKAQKDNKDPWLALLDYRNTPTEGVQTSPCQRLMSRRTRTPLPVATSLLYPEVSEGIKERLQRKRQKAKSNFDRNGKFLPDLDVGQEVRVRGKRDKTWELGKCLEKLSDRSYMVQTNGEKLRRNREEIRPCLDVEERNSANNPETEVSLDAESDQHEPTVPVESKPNGSQRRSSRSITATPDCRGNQTRSSRTIKAPARYKDYKHQMQASFKIPLPPITYHFSNGMNPQLYIVKIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LDM2</accession>
    <name>A0A7D9LDM2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073031</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015479">
        <property type="protein sequence ID" value="CAB4028421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LDM2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25811" checksum="86952FA137030A90" modified="2020-12-02" version="1">MLIPAVKTLICWDAVEKYFLIKQPRIMSKEKKEASLKNNERGIVKDPSCLNPLLQKEPQGMQAVQQTTRKLPQIITEELPLPTDEWRVYQAQDIPENWYILGCKEDGTEYESRPLLAEISSPKEHYRITALQNSCKASEGSRRKKVDKKEAKKKTLEEKDSSIVQEQLQEEEELQNAESLCSEASTRLQNAIKERDMNEMLVVQGLMDVASKKMESARRKLENC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHU7</accession>
    <name>A0A7D9LHU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053352</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018495">
        <property type="protein sequence ID" value="CAB4032561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHU7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="15"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12067" checksum="B955EBC5B6FCF751" modified="2020-12-02" version="1" fragment="single">MSFNKKEVGEIADIISDLSSSSQPNISESSSQETKAAGKKLLELDGEIGVLKSQLFVPMTNFAVRCTGYVVDDSSSTVARGFLFRVIPKDRVHWHCEDIEVRESDDNQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LP20</accession>
    <name>A0A7D9LP20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019719">
        <property type="protein sequence ID" value="CAB4033991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LP20"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="40028" checksum="1D58A9DEFFF1BDFF" modified="2020-12-02" version="1">MTQKWFDVTDNSNIGRKGVHTTFLDFKKAFDRVDHRILLIKLAEMNVSKAFWSWVKCFLTERTQHVNLHGVISSSALCPAGVPQGSVISPTLFNIHINDLENTLTNNLTNTHKYADDCTLDEVVTNGALSNMQESTNQVMNWANDNKMMVNPKKTKDMWISFSQSSSEPPPIQTDGIEIKRANSFKLLGVWVQNDLKWNTHVCKITKRANKLLFLLRECRKSFLPPEIGLLTYTSKIRPILEYASPVWGGIPKYLEAEIERVQQRSLRILGLEKDTLPTLKERRDKATCNELKRIVEVPKNPCNRFLSGNKYHTYELRRTRDSTPRQLSKTHRHSTSFIPRACRLTNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LR41</accession>
    <name>A0A7D9LR41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078478</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023737">
        <property type="protein sequence ID" value="CAB4038036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LR41"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10042" checksum="C2272003A0007300" modified="2020-12-02" version="1" fragment="single">MKYSKLKAINWGLPLAGHKLNVTPIATSRVTNHIKCMVHCAKTEGCVAINLGPAQAGQHECEMLETTRYSILNILSAKTFTAKAGWTYIGPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M5L1</accession>
    <name>A0A7D9M5L1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Tachykinin-like peptides receptor 86C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A031102</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031656">
        <property type="protein sequence ID" value="CAB4043157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M5L1"/>
    <dbReference type="OrthoDB" id="9445642at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695:SF9">
        <property type="entry name" value="LEUCOKININ RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695">
        <property type="entry name" value="LEUCOKININ RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0807">Transducer</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4043157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="10968" checksum="F4BFD768683F22E3" modified="2020-12-02" version="1" fragment="single">KQLLEKLKECVFEMLGDFTQTNISINDTNSSIGGNDTDNAIYNKISAAPLFLSIYAIIFIFAVGGNCLVIWIVATNRKMHEVTINYLLVNLALADLIQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M7A6</accession>
    <name>A0A7D9M7A6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">High affinity nerve growth factor receptor, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004058</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033473">
        <property type="protein sequence ID" value="CAB4043898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M7A6"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051681">
        <property type="entry name" value="Ser/Thr_Kinases-Pseudokinases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="342" mass="39110" checksum="64E849D9350EC5F9" modified="2020-12-02" version="1">MPSLIKRRRIDHGLPPFDWKLLKIVEELGSGTFGSVHCGTYGKDKKTVVIKKLKSESGDAKSRFIKEAKMLLGITHANIPAFLGFSDSPYAIMMEYFEDFCHFVDDEWNFDSFADVLVVCVKDVVNAFEYLHKRDIAHRDLKANNVLITNQHYCHKDKESFSHIYAECPVVCKLTDFGLSRSLDAQTQSILQSHTEEIIRGTPVYMAPEIHLGILKSANQIDLKKTDIWSLGILAYAVINPNLINPYYKEADALGSPLTMEIMKSFMQSQLFPTHDAKYELHRVTLWLQIEEIFNSCAKFDPNERPAISEIAQGLNVEDPEESLIVKGLKHQPEHRTRKRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M8U2</accession>
    <name>A0A7D9M8U2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Stimulator of interferon genes -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A026301</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031149">
        <property type="protein sequence ID" value="CAB4042933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M8U2"/>
    <dbReference type="OrthoDB" id="6053839at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005776">
        <property type="term" value="C:autophagosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061507">
        <property type="term" value="F:2',3'-cyclic GMP-AMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035438">
        <property type="term" value="F:cyclic-di-GMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002218">
        <property type="term" value="P:activation of innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000045">
        <property type="term" value="P:autophagosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016239">
        <property type="term" value="P:positive regulation of macroautophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032481">
        <property type="term" value="P:positive regulation of type I interferon production"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061709">
        <property type="term" value="P:reticulophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.5200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12100">
        <property type="entry name" value="Stimulator of interferon genes protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029158">
        <property type="entry name" value="STING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038623">
        <property type="entry name" value="STING_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055432">
        <property type="entry name" value="STING_LBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055434">
        <property type="entry name" value="STING_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34339">
        <property type="entry name" value="STIMULATOR OF INTERFERON GENES PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34339:SF1">
        <property type="entry name" value="STIMULATOR OF INTERFERON GENES PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15009">
        <property type="entry name" value="STING_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23417">
        <property type="entry name" value="STING_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="STING transmembrane" evidence="6">
        <location>
            <begin position="107"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="STING ligand-binding" evidence="5">
        <location>
            <begin position="225"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF15009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF23417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4042933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="424" mass="48079" checksum="E3532C5B301B1DBE" modified="2020-12-02" version="1">MFGSYTEDPFQTGTKMEESAIIFDEYDLPSAAMDLDKNHGFGPIPEKRQKRAAFVSVGLSLIIMVVLIGAFTKPKDELYVVEGNTSMLHEDEMFCRKDDQYYHVGIFIWSLNLIGIILGEFVNRSCLMFEEYFHLYTRYGGSKRKMFYACFSDISFRAVFFATLVAFVIIGSTLLSQGTKYFKFEYIEIILSGVGSSTLVLYLLSLDTLSRVQVSSLMENNNRLVANGLAWSYYFGYLKIILPKLHERIAESEWKDVLSSNKLFILMPRDCWAYGKLSEEAEDGKIELAEGGVVEVEAERAGISKRSYRNNVYKIKIDDCEPLQVLAEYATPLCSMYDMNHSAEANLSVEDRDEQAKLFVRTLEAILRNPSVPEVRNKCKLVPYARSPDSDVPVSKVLADAVLDDMKENSSLDSLDGIVEENTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FIG0</accession>
    <name>A0A6S7FIG0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Pentraxin (PTX) domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A026228</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000193">
        <property type="protein sequence ID" value="CAB3979394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FIG0"/>
    <dbReference type="OrthoDB" id="547680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001759">
        <property type="entry name" value="PTX_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51828">
        <property type="entry name" value="PTX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pentraxin (PTX)" evidence="2">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="15251" checksum="F9A64BE33C99FB54" modified="2020-12-02" version="1">MSKIAQTNVWNHVLPNEAITAMSYGGTSIEENLLRWSDVVASYNSDAYFTQHPFHLYLPDGVVQKRRDEFCRKNAPICPSGNTHYARIGPRHTNDPPGIQWRCYCPVNVGEDKNVQVVNDKYHTYEQLMYIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQX1</accession>
    <name>A0A6S7FQX1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Probable imidazolonepropionase</fullName>
            <ecNumber evidence="5">3.5.2.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A033032</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4-imidazolone-5-propanoate + H2O = N-formimidoyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23660"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58928"/>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
            <dbReference type="EC" id="3.5.2.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the metallo-dependent hydrolases superfamily. HutI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.7" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020000191">
        <property type="protein sequence ID" value="CAB3979373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQX1"/>
    <dbReference type="OrthoDB" id="194468at2759"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050480">
        <property type="term" value="F:imidazolonepropionase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:L-histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:L-histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005920">
        <property type="entry name" value="HutI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42752">
        <property type="entry name" value="IMIDAZOLONEPROPIONASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42752:SF1">
        <property type="entry name" value="IMIDAZOLONEPROPIONASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="Composite domain of metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Amidohydrolase-related" evidence="12">
        <location>
            <begin position="41"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3979373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="16928" checksum="82F6805D73A80EBC" modified="2020-12-02" version="1" fragment="single">LGVSLGARAASHLEEISDKGIEMMGTSSTVGVVLPTTAYILKLKPPPVRKMIEHGCAVALGSDFNPNAFCLSMPLVMHLACVTFGMTMNEALVASTINAAASIGRSHSHGSLEVGKVADMLILDCPRWEHLIYQFGGHDHVIKHVIKKGRVVHSRMST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSL9</accession>
    <name>A0A6S7FSL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003299</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000162">
        <property type="protein sequence ID" value="CAB3979039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSL9"/>
    <dbReference type="OrthoDB" id="10070551at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="17128" checksum="51F8AE00D4489375" modified="2020-12-02" version="1">MASQNRASGPSSFPVNGKEQQHTDLFQNLEKLIASAVSICRLDGSVQCQIGGLITVIEELQRLLRHSFAEIKRLEGDFHDHKQAFARLEMERNQEYNEYQEYQDNQRDMLTMFERNLNDQKHTFNNGITNLHYNINEVQSNVETLKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWG3</accession>
    <name>A0A6S7FWG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Spermatogenesis-associated 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A071324</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000676">
        <property type="protein sequence ID" value="CAB3983928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWG3"/>
    <dbReference type="OrthoDB" id="27435at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19503">
        <property type="entry name" value="RecA-like_CDC48_NLV2_r1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd19511">
        <property type="entry name" value="RecA-like_CDC48_r2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000018">
        <property type="entry name" value="Cell division control 48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001985">
        <property type="entry name" value="Chromosome 9, whole genome shotgun sequence"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000069">
        <property type="entry name" value="spermatogenesis-associated protein 5 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050168">
        <property type="entry name" value="AAA_ATPase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077">
        <property type="entry name" value="AAA-FAMILY ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077:SF27">
        <property type="entry name" value="ATPASE FAMILY GENE 2 PROTEIN HOMOLOG A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3983928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="908" mass="100421" checksum="21EA363452714F58" modified="2020-12-02" version="1">MSGKKQDDWTGCSKCKRYFPRKSFNHHQNMCRAREEDADVETSGKTGYIDRGVLFGKILRIASIKNEKVNEKRNIVTLNTSTVKALGLHLGSLISLHLKHKHIVRTLWPSSQTPLDSVGIHESLSTNYKVSDGDTVILHGVVGISCHANKVVLTSCKPLEFELTPRFLQYSTYYLENTFVFPGEIIYIPHYGQMKQFYVTLVEGDHGTFEISSQDLLDESLVEGFSSLNMSNQSISDVSCNISKYNISFKTGDLHDSIANNGGETSTDSSNISTYYSFCDESIHHDTYDNQACPTSGNTDVIFTSTPVKTDTKSTNNPYEISCPRCSTATVSYYITAAVTKVVINQSRDNKSATRHGIKEKLTYDSVGGLDKQIQTLKDMVELSIISPNVFQSYGLTPPRGVLLYGPSGTGKSLLARTVISESDVYCITLNGPDVLSRYYGESEGKLRDIFLDAERNAPSIIFIDELDALCPKRDKLQNEFEKRIVATLLTLMDGLTTSSTSGVFVLAASNRPDSLDPALRRPGRFEKEIEIGIPKSSGRADILSKLLKKIPHSLSHDELVRFADNAHGYVGADLMAVVKEASMVALRRNSQNVHQPSDNDESGNSAHFVLSMNDVREAFQHVRPSGLREVAIDVPKVYWNDIGGNATVKQKLKQAIEWPLKHPQAFTRMNIDPPKGILMYGPPGCSKTLIAKALATESGLNFIAVKGPEIFSKWVGESEKAIRQVFHKARTAAPCVVFFDEIDAVASKRGGNDGDVSNVSERVLTQLLTELDGVETLNDVTLVAATNRPDVIDKALMRPGRIDRIIYIPLPDEETRTEIFNIQLRNTPLAPAVNIDDIIAQTQGYSGAEITAICREAALAALQEDINAIHVKHEHFVQALQTVKPRISADLVQYYSKFQEQCGIHSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G121</accession>
    <name>A0A6S7G121_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032957</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000498">
        <property type="protein sequence ID" value="CAB3982429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G121"/>
    <dbReference type="OrthoDB" id="5988984at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8885" checksum="51C3953C26F55749" modified="2020-12-02" version="1">MQLYFRKREPASHLMVFMIADEHREFKPYAIPVRVLPVTTVTDNDMRHLRDQLVDAMEELGMIVVEGLLLMVNGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAF6</accession>
    <name>A0A6S7GAF6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000491">
        <property type="protein sequence ID" value="CAB3982351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAF6"/>
    <dbReference type="OrthoDB" id="6132182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00057">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01450">
        <property type="entry name" value="vWFA_subfamily_ECM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000001">
        <property type="entry name" value="semaphorin-5A isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543:SF291">
        <property type="entry name" value="SMOKE ALARM, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00090">
        <property type="entry name" value="TSP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00453">
        <property type="entry name" value="VWFADOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00231">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00209">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01285">
        <property type="entry name" value="FA58C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="540" mass="59875" checksum="7FFE0791266C882A" modified="2020-12-02" version="1">MTLCVSAKNALGKDESKNSIKLPKVHVTTKKDKKWNEAEQVKNSIDEFWFNEEEEKAENLTCNKPLDLVIALDSSESIREANWTKLIRFTKAVVKTLDPTLTRVSVIRYNTNAEVPIPLGFFQSADAFGTTLDNVFYEPGGTRTDVALSKALAVFASGGQRRASRVLLVVTDNPTNDIRLSKESLVIGRDLVEKPSESLKSYEVITFGVGIQYGLTATELTDLNEEIKMFTLDHAGDKRVVEVQDFDGLLKEANNVAGKICLVNGGWSSWSPWSQCTASCGGGTKVRLRRCDNPKPVNNGTNCTELSGSTVETAACNIYPCTDGLEVTSLRPLPFHPAKGAAQNILFSKDCPNGFDYVIVGNDQMSASSVYTKDTGDPTILKLHGPGNGRLYNVINAGAWCAEHTESVTNNQEQYIQIDLKLPIKIAKVGTQGQASLISNNWVTFFKFNYSEDGRTWKQYNQTLKGNEDREGVSESVISPPVKARYVRFNPVHWNARGGLPKHDICMRVGVFTCTEIKLTKQNHKTFKRTLIRTRKNRST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCG0</accession>
    <name>A0A6S7GCG0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000559">
        <property type="protein sequence ID" value="CAB3982961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCG0"/>
    <dbReference type="OrthoDB" id="6099050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF13">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="122"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="30808" checksum="FD1CA61CB3F572F2" modified="2020-12-02" version="1">MAEDEEDLNRLNNFDREGLPNSGSEREIIEYYFHKGFEYKNIVLFLQRYHGIRLSERTLKRRLKDFGLKRRELVDENVEGRARDIIKEELSAGPDSLNGYRTMWHILRLRHHINVPRQLVASIMKESGILDMTNDIHKEALWFCFADVFQTDLDKAKQHWNSHRIRKSHETTVPGVPDILYFLPEQSGGDRQDCLAQVPLCKLEEVEQQILGGSREEETDEVWEEYFHYVMENNGLTYPTTIFEAGELFQSLVNFATGLTEAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHQ2</accession>
    <name>A0A6S7GHQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001737">
        <property type="protein sequence ID" value="CAB3990853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHQ2"/>
    <dbReference type="OrthoDB" id="10582296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16698" checksum="AB5595C016E0A715" modified="2020-12-02" version="1" fragment="single">MRITLLRSATLLFFHLFLTKFYRHANADVYLQIPRSSSNRLLQNGMNRENDDRVLEFQNNADEDHNALDKDINPTSNPAKGGKLPHLFEGDIVLTPDDIKELKELEEGGDNGQASPDITKRNARRNRKKLWVTKIIPYELPESLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRW8</accession>
    <name>A0A6S7GRW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001156">
        <property type="protein sequence ID" value="CAB3987321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRW8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="14226" checksum="C8872CBC2ABA3D1A" modified="2020-12-02" version="1">MIHQENESSTSSETDSDGGGDDSDQTGDENHPQAIVQIQSPKTPEAISQPTTAPVSNVNGGQFQEDAQIVNQQSEQGDTNQLPLQESEAQPQVVGVNPVLGMELGAVIVLDDENVQDMVLVTTVQTTPAIMEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GYT2</accession>
    <name>A0A6S7GYT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A009959</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="11">Homotetramer; disulfide-linked.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001690">
        <property type="protein sequence ID" value="CAB3990607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GYT2"/>
    <dbReference type="OrthoDB" id="7735550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008061">
        <property type="term" value="F:chitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00087">
        <property type="entry name" value="FReD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.215.10:FF:000001">
        <property type="entry name" value="Tenascin isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020837">
        <property type="entry name" value="Fibrinogen_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143:SF45">
        <property type="entry name" value="FIBRINOGEN C DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00186">
        <property type="entry name" value="FBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00514">
        <property type="entry name" value="FIBRINOGEN_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="2" id="KW-0147">Chitin-binding</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="665"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00038769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3990607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="665" mass="75489" checksum="EAACC8B6BDE0ACA8" modified="2020-12-02" version="1" fragment="single">RWYFLGWSLKHKCTFYHTVLIQQIVDHEILLEKMQIYDDTNLTASGGTIDDVENAVNSDLENLRMWLNANKLSLNIAKTEFMLIGSRSLVHTVSDSNLNIMIENRPIKQVKECKTLGVIVDQHLSWKSNTESICKKITSAISVIRKLKEFVDRDTLVSIFNAIVQPYFTYCSEVCARIIMDMGNEVNAQIALNSLGLETLKVQRTKAKLSICFAKQTNEKSGPVKHVSILVCKSLNGYSPRGNIDTKSCDALCKSGKTTTGVYTIDPDGQGDFKVRCDMTSTPGRGWTIFQRRVDGSVDFYRNWNDYKNGFGKLAGEFWLGLDKIHRLSVSGHNVLRVDLESFENETRYANFGTFTVGNENEGYILSIGQYTGDAEDSMNYHNGMKFTTKDVDNDYFTNIQCAQTYKGAWWYNQCHHSNLNGQYLAGPHSSYADGVNWRDFKGYKYSLKTSEMKISVNSQVNILVLLNVLLRCELFYDLALKDQCRTERIESLQHLPNLKLSPKQETSTLSDQASFMLKTLHFDVLNFVVNDSYIASEEPLDITSGRSFMKTAKSIGPKILPCGMPEITGTQLDGTPSTTTFWLYKGGNRNLVFQGRNCLVAFIYFKFTERIENKMQYCTKTQKKEIQGLDHTDTCSPVRLSSLPAFRFLQMNNIDFNEVSDAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZZ2</accession>
    <name>A0A6S7GZZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048196</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001732">
        <property type="protein sequence ID" value="CAB3990827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZZ2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15437" checksum="09266C0954C4119A" modified="2020-12-02" version="1">MMRTNLRNGDCTVYYCRKYQFSACQDGAITTRKYFGKGGEFYEVKNMDAFNATNEGFGCQQLRYLTTVDKNNPHLHYQAEKRIIPSFMFVSDVQFINESVHFELHFGADIHKGDLGGEEGRYIVLEFSIFEND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H096</accession>
    <name>A0A6S7H096_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001566">
        <property type="protein sequence ID" value="CAB3989901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H096"/>
    <dbReference type="OrthoDB" id="7700357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016706">
        <property type="term" value="F:2-oxoglutarate-dependent dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015095">
        <property type="entry name" value="AlkB_hom8_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09004">
        <property type="entry name" value="ALKBH8_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14605" checksum="BEF830D481B566E5" modified="2020-12-02" version="1">MDLVAREIQQYCMDHKMKLNPKKCKEMFVNFMTNPNILSRDLVVNGTQIESVDAYKLLGVMLGSNLKWNTQVDDKTKKACKRLYALRVLKKAGLQERELVLVYKSMIRPILEYAVEAWSDFPQYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H1Q0</accession>
    <name>A0A6S7H1Q0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF6589 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A009972</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001683">
        <property type="protein sequence ID" value="CAB3990580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H1Q0"/>
    <dbReference type="OrthoDB" id="5988638at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6589" evidence="2">
        <location>
            <begin position="16"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="120"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3990580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="35774" checksum="E0F4CAA6AB85647A" modified="2020-12-02" version="1">MNRTGKYNAAKGVEHHYNEYKEFHQREIEAHICASFMEMSGMNNLSDAPNYDIPNTDVPREDRRKWFLELCVQYVNKFLINFEVEPFLQASTDTFPCRIEGCTKMYAHHSMCVNSKHPESQLSQQQGSQQSDTENQTPDEDYLFNYHSSKLSFGLILMEFNDAIKEGDGERLHDLYKFALVLFKAHGKVKYSYAILMYLVQIESFLSEADAHNLKWNRFYNNHGRVGGNIPLDLRMEQLNKIVKTMWRSLGANLNEKSATQLANTIEPMEQILNTIDRECEITDSAGYLSKGKPETDVEIIMILKKDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2Q5</accession>
    <name>A0A6S7H2Q5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035850</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002977">
        <property type="protein sequence ID" value="CAB3996926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2Q5"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="449" mass="51643" checksum="C647583FE5EAEE4F" modified="2020-12-02" version="1">MDLLLTITNEHVPQVAISDNNNKPWIDKEVIQMMHKKDRMRKIAKRTGDHTDIENFEEIRRNAGKLIEVKYKDYLNELKSDLTEHPKRFWTFIKAKTRAYSTPQFLKYGNVFATDGKDKANLLNSFFHSVFISGVSPESSDEYRSEENCEIVDNSLSQIVLNESEVLDCLLNLDQTKTGGPDDISARLLKTVANEITPSLTLLFSLSLRLGEVPSIWKQANVTPVPKVGDVHCVENYRPISLLCIVSKVLGKCIYNRCYDSISGIAHHLQHGFLRGRNCTTQLIQVYHKILKALDNKHSVDVIYLDFQKAFDKVSHHLLLRKLSKHGFFGSIINWFKSYLSGRIQRVALDGHYSEWLDVTSGVPQGSILDPLLFILYINDLPDQIQQPTEMSLYADDSKLYRTIKLDADTENLQLDLNEMNSWTETWRIKFNTNKCKVMRLSRKKSSRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H605</accession>
    <name>A0A6S7H605_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Apple domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A061583</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004012">
        <property type="protein sequence ID" value="CAB4001135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H605"/>
    <dbReference type="OrthoDB" id="10637433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Apple" evidence="2">
        <location>
            <begin position="4"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="88"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="18676" checksum="88A7AD1A4438752C" modified="2020-12-02" version="1">MIKHVHAESGMDCIIQCVVFPDKSCRSANYNKTATAGGEKNCELLKTVHSEEDAGSLKRNETFDHYIILSPERETQHADSSSTTLPVTETISTTTQKKTGGLTIQPTTNSTANDSRPRSTTSKTQPTDTFTKNQDNSTPRRTNPSTTQPQLKNKSTLQRKTDVTTTQAIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6N5</accession>
    <name>A0A6S7H6N5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A067035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003653">
        <property type="protein sequence ID" value="CAB3999696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6N5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="78"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="8"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13830" checksum="FE6635D0F54A160C" modified="2020-12-02" version="1">MSEEHPSTTTVPVTNPVKTHVKDPKKVEAGRRLPKISQEAQARKRAQLEAIKEEQNVFDIENKCEGSGGDTAITLERVGMVVGITVGLGSLYIMWCNRREKSEKMEESKSAEKSQGDPDLFDRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFC3</accession>
    <name>A0A6S7HFC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062748</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004198">
        <property type="protein sequence ID" value="CAB4001873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFC3"/>
    <dbReference type="OrthoDB" id="5953261at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.80.10">
        <property type="entry name" value="Lipase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12451" checksum="58FE6E3CA519AC2A" modified="2020-12-02" version="1">MNQSYHVVILAFLTLLADAKSIKTTCKENAMCDTGECCVFGVCMPFIPVGKRCSLLQQIMSVQCPCAIGSSCTLTNTFSAETMSCQNIKSPQYLETVENRDSKHIESNNIEDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGL4</accession>
    <name>A0A6S7HGL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069893</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004393">
        <property type="protein sequence ID" value="CAB4002587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGL4"/>
    <dbReference type="OrthoDB" id="5988115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="386" mass="43732" checksum="432F15D5D5339361" modified="2020-12-02" version="1">MAEEQQVSSCKVSAKKPSKARGKPKPKQFRWETGMVENLIKCLQAYKSEMEYKNVDFDGDRPAQYTWVRQEMAKLYPLWLYDEDTSIFGPVFLSPPNIPFSTMCKEEKEEYTKQNQAENELTKKGYSRIREKIKDIRQNFSQAVTNGRRSGSGKIVFEFYDELVVIWGGSAATKPLEFGVISDNFQGAEQESEDNTLVNSVVVEDDNVNEQTTLNEHDMADLDLDIGQPDGNIHDVIKAAEVAQKRKISNQIPHLIDNKRKHLEKALSAAQRDKLLLNEAKEDSTFRKNLAEATRQSTESFAIALKDVSTSIMNVGNGISRSMEMMSQAIMAQVMSNSQPRGPFNQNLFYQHGEMSHPPPVFQTHNGMYPHNPPCPSNSNIEPNNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HHI3</accession>
    <name>A0A6S7HHI3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038513</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004717">
        <property type="protein sequence ID" value="CAB4003759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HHI3"/>
    <dbReference type="OrthoDB" id="5989563at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="11223" checksum="74F5F2F6D5D40783" modified="2020-12-02" version="1">MKRYTDQARHTKKTLINVGDLVIYKQQKKNKFSTKFNPAPYKVIKVHGATITAQRHSHQITRNIFYFKRLNLGEKERQYHFDDQPSDEEEDEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HRF7</accession>
    <name>A0A6S7HRF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005680">
        <property type="protein sequence ID" value="CAB4007039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HRF7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="82" mass="9449" checksum="680AD6E7F8B2F84E" modified="2020-12-02" version="1" fragment="single">MEKFIESTNLKIDNLASEVNELKMAKSNSTLISNDESVATNEIANQLMKENQDLRDENKILREKNTNMSSTWSEKHQHVNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZD4</accession>
    <name>A0A6S7HZD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ras and EF-hand domain-containing homolog isoform X6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A027748</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007261">
        <property type="protein sequence ID" value="CAB4011765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZD4"/>
    <dbReference type="OrthoDB" id="9989112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00154">
        <property type="entry name" value="Rab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001348">
        <property type="entry name" value="Ras and EF-hand domain-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050227">
        <property type="entry name" value="Rab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47977">
        <property type="entry name" value="RAS-RELATED PROTEIN RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00176">
        <property type="entry name" value="RAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51420">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="203"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4011765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24213" checksum="8905B6D6419E4C6A" modified="2020-12-02" version="1">MTNESLSTSYATPERMYKLVLAGDAAVGKSSFILRLCKNKFHSSLNATLGVDFQVKNLKVDSKTIALQLWDTAGQERFRSIAKSYFRRVDGVLLLYDVTCESSFVNIRDWMSTIEESSQKKVPIMLCGNKCDLRDSYLREGRKVVSRESGQRLAKHYDALFIETSAKDGKHIEDACKELARILTSLENEEIEQSGLKLEKKDREKKKRPCCPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I473</accession>
    <name>A0A6S7I473_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047959</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TMEM121 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004021">
        <property type="protein sequence ID" value="CAB4001182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I473"/>
    <dbReference type="OrthoDB" id="10063692at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026624">
        <property type="entry name" value="CECR6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032776">
        <property type="entry name" value="CECR6/TMEM121"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47399">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 121B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47399:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 121B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14997">
        <property type="entry name" value="CECR6_TMEM121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="30666" checksum="290593EF90187F14" modified="2020-12-02" version="1">MGLYIVSRFFFFAFLVAQHVLLSKFVADHEDNLGFYGLVAMLLIPVGFWIVTLCSDELPLKQYLSTVWFLYSCVLVIMIGVIFGRAVIEDNKLREQEIATCLCTRNVNATTDHSFFDSKFLKITLCFTPGLMLLLLTSVTDKTETLRQLYLMIVMDLFDGIEMIEVLHEDICDKIPMGWEIAVLVAALLFFLLSFLEVHQVKFDEDEDDAEPTLRKKKAACTLVFQIILNVAFLVIRLVLWFHYDFDSAIFLAKNVISLVMGLVDVCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IA81</accession>
    <name>A0A6S7IA81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054262</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008777">
        <property type="protein sequence ID" value="CAB4015594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IA81"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="414" mass="46590" checksum="B2039A00FF7AF600" modified="2020-12-02" version="1">MNTTERELQPGFRRSRMTSIRGRRTRSVVTFNPTTISPGEELYINIPKLKPDSCLFPGSLALLFDFKNSNTKSRFNNNLAKLIAKRLQIKVAGETVYDCSGESLYEIYRDLWLTQGDRNKMTEQGLGSENLRKLISGDDSGVKVGDVGKVADALLHSVYGSKLRKPIDKIIADHGLYVPFYMNNNPMYILTLPGSDEIMTAQGGEAKGNYKLDNLELEYETIENDALTSEVSRMYSTGRSLSYKHVTLMRTSNWDKDLTIVNENINIPRKSMSAIVLLFTNRVRTNSEEYIYPNIDKVNLTIEGVPNAVFSQGLPKSRFFEEAKRFFCPMCEKSMADEFMSISKFFSDGFALVVDLRSTQDDTTGGGRKIVNTQSGVLMEINKRATTADVQCNIFVVSDALLNFASRDLSSIQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ID34</accession>
    <name>A0A6S7ID34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015882</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008767">
        <property type="protein sequence ID" value="CAB4015566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ID34"/>
    <dbReference type="OrthoDB" id="6733722at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="36023" checksum="6E98AFEE7D5BF616" modified="2020-12-02" version="1" fragment="single">HRLTTEAGVIDLNHIVNYPVKAVTVHRTTLKNDMIQLFQDPDTLGSLLMFTVIGFDGSAEKGEGVGVARDVLTSFWQVFVDSLAVVFVATCLFEEESLTNHDLLQSFRMYISDDERETFDKCCNGELSPDDEEVLELLSSYKCHCIPNAENIRLIFSELAHQELIQKPKYVVHCWAPHIQTLKSFPPFQSIEVLKEMYDEKRPSSRKVIKLLKCVPANDAENQCLDHLKRKDQCDTCISAKHGNIDEVSYEAHIKVKDEARAEKAKDTENAGLKKSVWTIDVRAVFLLPKIKASALYYKTKLQVHNLSFYNLKTKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ID78</accession>
    <name>A0A6S7ID78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041781</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004136">
        <property type="protein sequence ID" value="CAB4001618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ID78"/>
    <dbReference type="OrthoDB" id="410381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="313" mass="35569" checksum="AF3012BE274982AD" modified="2020-12-02" version="1">MVNSRITSDNSIRILQLTAEEVCSYLRNLNAHKETGLDGLSYKILKMSTYLIAPSLTKNFNKGLSSGMFPTKWKTSKIIPIYKSGAKCDVNNYRPIVILCAVSKVLERHVHNHLYQFLVSYNLLHHAKSGFRRYHSCETALCKLVDMWTSNMESGLINGAVFINLRKAFDMVDTYSLLRKLAVYRCDDLTLTWFKSYLQERDQCVHFKGTFPSKKSSLYGVPQGSILKPLLFIMFINDLPLYVNSNTDMYADDSTIHTSARTVGELNNKLTEDMTNVQAWCTNNNMVINDGKTKAMIITTSQRAATLNSNLRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG70</accession>
    <name>A0A6S7IG70_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A075491</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009213">
        <property type="protein sequence ID" value="CAB4016676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG70"/>
    <dbReference type="OrthoDB" id="5982355at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF44">
        <property type="entry name" value="SI:CH211-211K8.4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="109"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="154"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="496"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="110"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="162"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="502"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="527"/>
            <end position="542"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4016676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="549" mass="62354" checksum="E8F637D9F4E89441" modified="2020-12-02" version="1">MPPSRCVVQNCSNRANGKKGISVHLSPLDNKRRKIWLTFVKTHRQNFSPSGRFVICSAHFSKDCFERRYVGENGSPRRLREDANLTIWKPKLTHSPESKRSHRRILKDVLSSNTATEPSTSTSFDSQADIQQTAQVNSKYANYKFTSFTDVLSSNTATEPSTSKEIDPKDQELSDEPPPSQLIVTPLSSTSFDSQADIQQTAQVNKTQTSNINEININEININEININEKNDNGDDCDKININKKNDNYDNCDNDKDDCHEGSIDSTSDIDDNDTCWTPENVEQEYNDFLGGNDEVKSTRTWESWPTKKEHFISIRVGLLIHIELVQANQAGNSTAMEFLGHQKAFSFLLSTGMIKTTFVSDRHASIAKWMREESTKLCKEMKKKSKIEHYYDRWHVARRSPEYEKLNKVLRKPRIVKAIKKSSSLGQTSGLEGYHSVINQFAPKMLAYSYFGLLSRTILSALHFNYNLKREDKKDGEGNVKLRVTYPKFKEGEGTVKQVKTEQNYESELQSLGRQQGSASSTRKQPVCRKCKNPMKGHKKGTCSSTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ITM2</accession>
    <name>A0A6S7ITM2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A009398</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006282">
        <property type="protein sequence ID" value="CAB4008952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ITM2"/>
    <dbReference type="OrthoDB" id="1630758at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018957">
        <property type="entry name" value="Znf_C3HC4_RING-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00097">
        <property type="entry name" value="zf-C3HC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4008952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="328" mass="37387" checksum="482C63DF8F4621CE" modified="2020-12-02" version="1">MACCPTEEKYGYEHSRFEKDVDENFHCSICYNVLKEPRMCRNNEHVFCLACISEHLKVNSQTCPECNEHLSVDTLRRPRVLNNMLSKLKINCDYANRGCPELNCVANLDTHVANCGFAPVLCSNAECGMEINKRDKVYHETEVCEYRRVKCHDCGQIQEDVGTLKGRLMELDGKVEAVMRDSNAEVKKEIKDVKENLSKVNKDVDEVKVMMSQMLEKFNMLELLSKLPSPTEGMFNTPREDILIAGGCGARDSAEILSWLGEKLLLFVVGGCTITKTIETLDLNELPLKWMEFSDKLPYESDDHQTVVYQQHVIYIGGHNDDEDKKSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWS9</accession>
    <name>A0A6S7IWS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029233</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006651">
        <property type="protein sequence ID" value="CAB4010012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWS9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="129"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="15557" checksum="9DCF89E65D96E2B2" modified="2020-12-02" version="1">MTTQTTLASPLLLTAIRLIYDDSKVKLPDGDPDQQTNKVGGCEEAYVSIPKERKQPSASKRVSTTAVESPLGINQYSLMSVKEVPNGNEEVDNITEAIHVIKPTTRSDSSRTRRRHPNTNSEVGTQIQKDQHQSRDKGWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IY37</accession>
    <name>A0A6S7IY37_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NFX1-type zinc finger-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073352</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011616">
        <property type="protein sequence ID" value="CAB4021779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2423195at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031380">
        <property type="term" value="C:nuclear RNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031048">
        <property type="term" value="P:regulatory ncRNA-mediated heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06008">
        <property type="entry name" value="NF-X1-zinc-finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000742">
        <property type="entry name" value="NFX1-type zinc finger-containing protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045055">
        <property type="entry name" value="DNA2/NAM7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047187">
        <property type="entry name" value="SF1_C_Upf1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000967">
        <property type="entry name" value="Znf_NFX1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057373">
        <property type="entry name" value="ZNFX1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887">
        <property type="entry name" value="DNA2/NAM7 HELICASE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887:SF341">
        <property type="entry name" value="NFX1-TYPE ZINC FINGER-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25396">
        <property type="entry name" value="ZNFX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00438">
        <property type="entry name" value="ZnF_NFX"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1567"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1567" mass="179489" checksum="98B303728D7F0BEA" modified="2020-12-02" version="1" fragment="single">TSPPNTTSNHRSPQGRHDSRNHATTTPKPMSYTYLKNLCDDQVPPEDASSKLSEHEQLQRFEALLQEHEIRYDLMKLIISVVYKVCQSRIPTHLNKIIGILSMVRFWSTLGKFIVELETKNECLSDPHVPSVLKHLCGILSISLQRLPHLYSCIPLPQLQSAVKHFKENGNFPIDSTVDSLLMDVTGRCELVKKGIREKGQAQAEPPDDFRTLSVFPTEDDIFKKGKPFLRENIVKKPFSTVNQYLDIHFRLLKEDSLAGLRNGIWDLQKSHRQQQYGQAAVDSLSKSSNAKPQNDVIVYNDVNINEQVQATNRQVNTKGIIYNVEFNPKDPSIKRINWTRSKRLLHGSLVCLISTDFYKVYFATVQNRSPDMLSEGYVQLCFEGNEYPGYDDMRGKYRMVESSSAYFVAYRHILERLQDMNEETMPFKKYIVFCEREIDKPTYLKIKSEEENPKTINLESAKLQEKKLQLLQLADDDKTSHLKNVSPYDLRTWPDGDVIGLNESQYKAFQSALQREFAVIQGPPGTGKTYVGLKIAHTLLDNNHLWKEADGEKSCPILMFAYTNHALDSFLEGLTINRKDIIRVGGRSSSDILKECNISIARKERRNTEYQNGVRRLGGRRFREVEREKEICQATLNRHTELYAKSFKGILPATEFVRRGMRTNHMVYLSDNNDMLKFLGISLNPGAEQNAAKLADEEGFDEFHGQELGGHFYVGHSEDDEQRESKNKVLICFAEDTSKPEGILELLETDVLETETTEELEERTGGADFSRLSVEQRWSLYLLWLTRLREYLRVEIRKEQTKYLELSNEYEELRNIEDLAIMRNSRVVGMTTTCASRNHKLLRQLQPRVVIIEEAAEIFEAHVVTCLTEYCQHLILIGDHQQLRPNPSVYNLSVKYSLDVSLLERMIEAGVPYNRLSVQHRMRPEISKMFRHIYDGLEDHASVTEYENIRGVIKNLFFIDHDVRESVHDNVHSKVNQHEAEFLVELCFYLLRQGYKSSQITILTTYTGQMFVTRDLIKSRKDEFEDDLPRVSSVDNFQGKENDIILLSLVRNNEEENIGFLKTNNRVCVALSRARKGLYIIGNRKMLSNQSPLWKQVLADFDKSGCIGKSLPVACSNHQTENLVSSAAEFKKLVPNGGCLEKCQHRLECGHACPQMCHPNGHENFKCEKPCANNVNGCNVSGHKCTKLCHETCDLICQYPVDKMLHCGHPITLACSNDVNIAKCKEQCVKTLVCGHRCQAKCSASCTKKCMELVKKTDFSCGHDNTLACSATQKDCGVPCNTLLECGHPCDGRCGQCIQGRVHVKCVKKCNRNLVCSHQCKSNCTKDCPPCKEECPRRCCHSKCEKRCGETCIPCKEPCEWECEHYKCTQLCSDTCDRPRCDQPCKRKLTCGDGRTHVCRGLCGERCVCTTCYTNNGEDVRTILFGTEDEEDARFVMLKDCEHIFEYTALDKMMDGIDNEIKPKVCPLCRMPIVKSLRYGNVVKRIHNDLDNIKRKILGSTTEFEEKRFLPNVQIFQRDAECVKSNLGASCTYQYTLEFTLDEDDDEIVTRIQKKKKFKLFDNAEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZ42</accession>
    <name>A0A6S7IZ42_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A006909</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="7">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020013244">
        <property type="protein sequence ID" value="CAB4024795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IZ42"/>
    <dbReference type="OrthoDB" id="5800476at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000538">
        <property type="entry name" value="Putative Casein kinase I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050235">
        <property type="entry name" value="CK1_Ser-Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11909">
        <property type="entry name" value="CASEIN KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="17"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4024795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19666" checksum="23A021EB547EDBC1" modified="2020-12-02" version="1" fragment="single">MSSSRESKSEFIVGSKYRLVRKIGSGSFGDIYLATNITNTEEVAVKLESSKARHPQLLYESKLYKILQGGVGIPHTRWYGQEKDYNILVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMIGRIEYVHNKNFIHRDIKPDNFLMGIGKHCNKASNFPEINRRFRSIFSNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5T1</accession>
    <name>A0A6S7J5T1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A079678</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014724">
        <property type="protein sequence ID" value="CAB4027306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5T1"/>
    <dbReference type="OrthoDB" id="5987960at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="257"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="547"/>
            <end position="611"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="213"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="553"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="572"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="599"/>
            <end position="611"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="611"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4027306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="611" mass="70249" checksum="51A213AA8DC343E3" modified="2020-12-02" version="1" fragment="single">METHADEATTEPTGQNSPVLNENNFTNVIEIGHENKPHSDQDSLSEVTECRRSTRERKLNQKGKEYILDLKRNIFKQTKCCLVDKLSSLKTEVSTLEGSSITYEIEQLETLVKEFNQGLDELLKLLEPEQRESYITECQSVLNDWNNVKGSLVLNMQKYEIDNIRSNHQVSLPEDRKSTTSSVRTSSSIQEKKLQARAKVAALRSKIVVEEEIIEQKNLLAKHEAHLEKLKMKQQLAEAEAEVEVYEEAENDQDQIPALPKNRFPSPTTSNNNLNNKITRDNVTPAPLPVSQNVSAPDKSMNYNAPPFIPPQNSIRSAPVQQQILVPGNEQIPHTPTSVPENRQLYDSNKVILEALSLQRLPKLTPKVFEGDEMEFLRWESSFDALVASNTNDSKTMLHYLCKFLKGEPLKMVEHYQDLHHDADTAYRRAREELKYRYGNASVLTASIDKKLTEWPKIGRDSNRELLHFSDFLNQVEAAMNKYTALKFFDCARELVKLAEKLPGWAQNEWKRKVWQYKEINGEESFPPFSRFAETVKVLARRANMPEFGMTTKQEESRRKGFDNQRAKRNSSKNFSVFGTRVNQGNKNDKSTQFSPETFGERSQDRSHQRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J904</accession>
    <name>A0A6S7J904_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Medium-chain acyl-CoA ligase ACSF2, mitochondrial</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A087102</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipocyte differentiation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a medium-chain fatty acid + ATP + CoA = a medium-chain fatty acyl-CoA + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:48340"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:59558"/>
            <dbReference type="ChEBI" id="CHEBI:90546"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.2.1.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>octanoate + ATP + CoA = octanoyl-CoA + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:33631"/>
            <dbReference type="ChEBI" id="CHEBI:25646"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57386"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014284">
        <property type="protein sequence ID" value="CAB4026581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J904"/>
    <dbReference type="OrthoDB" id="10253115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031956">
        <property type="term" value="F:medium-chain fatty acid-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.980">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.38.10">
        <property type="entry name" value="Luciferase, Domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43201">
        <property type="entry name" value="ACYL-COA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43201:SF5">
        <property type="entry name" value="MEDIUM-CHAIN ACYL-COA LIGASE ACSF2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="7">
        <location>
            <begin position="171"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding enzyme C-terminal" evidence="8">
        <location>
            <begin position="393"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00037247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00039638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00048277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4026581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="478" mass="53063" checksum="6015F8CB18DADCFE" modified="2020-12-02" version="1" fragment="single">SPFTRHCNSPSNITQCEPLSWAEGKVVFIWMILPSVDAHSKFIVFTVNEHENICIAGPNSRAGYATAWPGFSLIYGFNKSFPGEAVNQALLAAGSIHADSKLSRLDSKSGVNKKELFLLFEDRSCVDPICIINPFSTLSNVWKVISNVDSTLDKRHFARWEDHSDNIFWLTKICIPVPLYHCFGMVLGSLISIIFGATAVYPSAGFDARAALAACHNEKCTSLYGTPTMFIDMLNHEDLPKFDLTSLRTGIMGGSQCHIEIMNAVIEKMHLPEMTIAYGLTELSTICCQTQVDDPVDVRVSTVGKIISSTEGKIVNEHGEIIPVGEGGELCVRGFGVMLGYWEDEDKTESMIDASGWLHTGDKASMDENGYVKIIGRVKDMIIRGGENIYPSEIEQFLHHHPKIQEVEVIGVPDKRLGEEVCAWIRSQRLMKGETATTDEIKEFCKGKVEHVSYLKLLTLINQLYSPLVYAFPLGTMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAT9</accession>
    <name>A0A6S7JAT9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006478">
        <property type="protein sequence ID" value="CAB4009518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAT9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15031" checksum="65C3B4867E775216" modified="2020-12-02" version="1">MGLELLLLKTLLLSLPVLSYADGNSTQKLLIPKEECEKISSVEVRYNEFYELYLGHGNGKDDIHEHGIIYQSLIRAVNACCPGMALNFTLVNRSVESLVQDDILHHHDVQNSSHLIFYFPEFTSQGNLGTRKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JD60</accession>
    <name>A0A6S7JD60_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FP protein C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A068755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015180">
        <property type="protein sequence ID" value="CAB4028004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JD60"/>
    <dbReference type="OrthoDB" id="5984307at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057251">
        <property type="entry name" value="FP_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25298">
        <property type="entry name" value="Baculo_FP_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FP protein C-terminal" evidence="1">
        <location>
            <begin position="205"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29394" checksum="4F1E0EAC29F83A0B" modified="2020-12-02" version="1">MAATKQLRKENEELREEITQLKEKLDEISLGLKVASQKGTTTLDQTKSIEFLSNQHDDFVKFTTTAMKDIREITTRLDKIEKKCDSITQAVDDIESYSYRYNIKIHGVPMTAENESSGQTTNLCLKLFAAIGVSDCTIQDIDIAHRLPARNPSSRPNAIVCKFTRRIVKERIMAARKQLSNVSASQLDLPGSAPLNRLSIYDHLTPKQQNLFYEAKKYREVKQYKYCWVKQGVIFLRKNDSSTVIKLNKLEDLTSLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIZ7</accession>
    <name>A0A6S7JIZ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein K02A2.6, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016667">
        <property type="protein sequence ID" value="CAB4030154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIZ7"/>
    <dbReference type="OrthoDB" id="5978836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="227"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="246"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="271"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="33898" checksum="E14259EEB671A701" modified="2020-12-02" version="1">MYLVVVDAYSKFPEVVKMTTTTATTTINALRDIFSRHGLPEILVSDNGLQFIAGEFQQFCRNNGIMHRTSAAYKPSTNGQAERVAQILKSAIEQARITKQDVNVVIAKSLLVYRNAPHSTTGAAPSVLLMGRRLRTRLDLVFPSVQEHVKQKQYKVLERSANLNVRSFVERENVLARNYQGKEKWIPGVVTKVLGSRHYMVRVPGYLWKRHVDQLVKYNPQIEPENDWDEVEISSEKSGTPEAEQLSENSNRYGNTSGTSSNDSVEKNDNENSVTDNSSANNSGSAEKRYPLRANRGRTDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPB3</accession>
    <name>A0A6S7JPB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006554</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018782">
        <property type="protein sequence ID" value="CAB4032888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPB3"/>
    <dbReference type="OrthoDB" id="5953692at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="39743" checksum="6C8B72E74586E713" modified="2020-12-02" version="1" fragment="single">ILQIFLDPIPSDEIKCYIHGVSNVKSSGKTNYFSCQLQTESSGVVRAVCFSPEKRQVLEQYEEKKSPVKLSKFRINEKEGSKDVIINKYTNVIKAEETAEFKCTPLPNSCVLAISSVNQVATGQLVSLRAKVAQLSSVKVINTTMGPLRKQEAQVVDKTGCIKLILWEDEVDVLDIEKTYVMKNIRVKQNQGEKYVNTAKGEKFLYEETEAYDEVVEVEDYECPSEAQIFGTVVGVRNVAKYYSCFSCSKKVIVDARGKIGNCSSKSCNMVQKVSSCNSQWFMKVMIQPEDTTEETVALSAFHEGVCKLASLSEDIISVASACEDELVRCILSVDKVKVTYEAGQNKLIDCELATDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JY73</accession>
    <name>A0A6S7JY73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018887</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022413">
        <property type="protein sequence ID" value="CAB4036787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JY73"/>
    <dbReference type="OrthoDB" id="10064735at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="243"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="244"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="31215" checksum="0CFFCC095CF6901C" modified="2020-12-02" version="1" fragment="single">MEDVTFTASEGDKSCDDDTTLTASTVLGMNESVELPLLEVSIEDDVFNTSIYGHNDEVLADDGTEASDSTDKIPVMTVPPEEAIQMDKCIVVFTDTLMSLLRNYMGESTNDLAVIVSWIIARPMLFPGDAVLVIKEADGQLNPVYQSLYISPAVNEFWEQHKEELWEEKAGKDVVLSGDGRNDSPGHSAQYCTYSLADMEDHAILQMNIMYVREAAGKSNNMERIGFERGMDKLLTSQMSVKEVVTDEKSDKNKDVKHQNDVWHGGKSPAKKKVTSKEDQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYC7</accession>
    <name>A0A6S7JYC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A057612</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021714">
        <property type="protein sequence ID" value="CAB4036118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYC7"/>
    <dbReference type="OrthoDB" id="10668776at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.533.10">
        <property type="entry name" value="Death Domain, Fas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011029">
        <property type="entry name" value="DEATH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001875">
        <property type="entry name" value="DED_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47986">
        <property type="entry name" value="DEATH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50168">
        <property type="entry name" value="DED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="316"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="591"/>
            <end position="700"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="258"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="339"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="357"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="396"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="437"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="603"/>
            <end position="620"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="626"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="670"/>
            <end position="686"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="687"/>
            <end position="696"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4036118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="719" mass="79463" checksum="C5D830B47D016274" modified="2020-12-02" version="1">MFWAIDHLIETKTESTDGEQLVSPSRDDGGDEVHSGIYFVFTVKILRETEFSKQYKCDPIFINDFNLNHKIQETIKSTSVKSPNSNRSFNPELMKCISETKSKFAETLISLDLAERCLQCPSEKTAEQLKLLFDRGKCTCKDTCKTLKKFYTLLIRFTEGENENAEYKDYENNKNDKGGKDDSDYHLDCECQPRSISAESLRKGTAKQEKLCTVSKILPYQDEEPVTKIKKGTAGKMWREKNSEQEHASLKWRGLNQKSHSETRIELLEQEISCLEELLQDVLADLGELTVEKTARESEGRKFELFHRIFRSSSPEAKRSVVSGINDKPDTEDGRLGYLNSSRTNGNGSPTGFPKAQRTNESVNSPVNGSTGEQRVQGAESLVPGSNHQEEKEANETCSNTGISVFGTNSENQNPTMQNSSKSVEKTSGGEGIDTPGNINGTSDAASTSRDESGEQSLTQRSNEDLLFSIQQDDSNGRECISLGNIPPTSVATTLYNNYKLLLLSLGQSLLSSDVVKLKDWASQGFAIANVQSATDVLLQLDQKGIINASNLSPLRDFFESVVRIDLVYIIDAFLLGDYSLLRQTPTWKKREASRAQNPQHGSTSRFSSLLNTLSSSTSTGRNVAASGSLQMSASRNPATSRKPENSNGPQNSVAQQNHQHALSGFLGYPNTNNANLVSRSPNENQSRAHEQRNEKPIASGFTETSVVVADGPVTSKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K235</accession>
    <name>A0A6S7K235_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025746</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025369">
        <property type="protein sequence ID" value="CAB4039426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K235"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="131"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30014" checksum="57158FF048038C98" modified="2020-12-02" version="1">MWNKSKVNPLGETTLKIMNPKNEEETVVDFIVVPNNYSCLLGLSTIQQMGLLTINDGNFIAHISTDANQLGSLGETQLHVDPNVPPRALPCRKLPLALQENVKEELNHIVEAGVLVPVEEPTAWVSQMAVVKKPNGSLRICIDPQSLNAALQREHYKLPTLDDVLPSLSQARVFSKLNVKQAYWHVQLDNESSLLTTMITPFGRYRWARLPFGLKVSSEIFQRKLNEALVGLNGVICIADDLVVYGSGNTREEADADHEQNLLALQERCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2Q4</accession>
    <name>A0A6S7K2Q4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Homeobox SEBOX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A049684</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025705">
        <property type="protein sequence ID" value="CAB4039666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2Q4"/>
    <dbReference type="OrthoDB" id="6159439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051000">
        <property type="entry name" value="Homeobox_DNA-bind_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24324:SF5">
        <property type="entry name" value="HEMATOPOIETICALLY-EXPRESSED HOMEOBOX PROTEIN HHEX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24324">
        <property type="entry name" value="HOMEOBOX PROTEIN HHEX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 5 6" id="KW-0371">Homeobox</keyword>
    <keyword evidence="4 5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Homeobox" evidence="7">
        <location>
            <begin position="93"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4039666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17710" checksum="44A4F63AD37640A4" modified="2020-12-02" version="1" fragment="single">MENSVAARILVNMSRTSMCEEEDVNRARDVNGGEFQYEQQTMSEHNVPMPLPVVSPYVLPWSLFAPQQFMVQAPVSPSLTGVSPLSVWPGIMAPRRRTRHKFSEYEVDVLERTFNSGVKYPTVGDRLRMASQLNFPERRIYIWFQNRRARSTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K887</accession>
    <name>A0A6S7K887_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">arylamine N-acetyltransferase</fullName>
            <ecNumber evidence="2">2.3.1.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082536</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arylamine N-acetyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.5" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020012762">
        <property type="protein sequence ID" value="CAB4023952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K887"/>
    <dbReference type="OrthoDB" id="10260017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004060">
        <property type="term" value="F:arylamine N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2140.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001447">
        <property type="entry name" value="Arylamine_N-AcTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053710">
        <property type="entry name" value="Arylamine_NAT_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11786:SF0">
        <property type="entry name" value="ARYLAMINE N-ACETYLTRANSFERASE 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11786">
        <property type="entry name" value="N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00797">
        <property type="entry name" value="Acetyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="305" mass="34966" checksum="3982E22395AD344A" modified="2020-12-02" version="1">MSYKTETGNMLTKTEAIEFLQIEWKIENVEQQLQNDREKFLNKLIFTAHEMVPFQMLFIGKLALIPPEERKVPSMAEIDHMCMSGNGGNCVVINMFMSRLLKALGYSAFVCRATVTSYVFNSHLIVIVKDLVITGDLHLVDCGLGLPSFRAISLNFNEESPVYRDSFLQYKFIKLDGKVLRMHGDGDVVVRKDRPIEDLDFICGKWRRFYEFTIETLECENLEDLGPVFSLAYLPKLKPRAARFPGGKAVLLNEGNILSIEQEDKTLKTVTLQSKEALQVFKHYFPSISEDLVQQAYSTWQKSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9F6</accession>
    <name>A0A6S7K9F6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057759</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028179">
        <property type="protein sequence ID" value="CAB4041357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9F6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="113"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17362" checksum="1AEC04AE6F289FEC" modified="2020-12-02" version="1" fragment="single">MERIATPATPNTFADYENDDPDLRMRCVGKSMTFQSKTHLATPNIKPWLRSPILNSKRKNVSPRPSEPSSEEEQNTTKGTRRTKQIESTTFPAIVTKDNTKETSSMCCKKPRKEAAKQRQKDEMRHSLPRMETRQQSKLGWLESELPNIIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIU6</accession>
    <name>A0A6S7KIU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integrase core domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059476</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039345">
        <property type="protein sequence ID" value="CAB4045415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIU6"/>
    <dbReference type="OrthoDB" id="10058156at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="129"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16553" checksum="EE460E58F94A891A" modified="2020-12-02" version="1" fragment="single">MFLVVVDAYSKWLEVHLMTSTTSTTTIEKLREIFATHGLPATVVSDNGIEEFMKRNGIKHIKVSPYHPASNGQAERAVRIFKEGNEKMKEGNHLHIRTDVPQTTIASGLEDIQLPTREVNPLSWVNPAEPRKNPNLKREQNKEDNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KKZ6</accession>
    <name>A0A6S7KKZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome P450 10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A080242</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032546">
        <property type="protein sequence ID" value="CAB4043524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KKZ6"/>
    <dbReference type="OrthoDB" id="10258113at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050479">
        <property type="entry name" value="CYP11_CYP27_families"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24279">
        <property type="entry name" value="CYTOCHROME P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24279:SF120">
        <property type="entry name" value="CYTOCHROME P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4043524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25543" checksum="FBBCB3D89590F0E6" modified="2020-12-02" version="1" fragment="single">MALLCCSFTRSLFLQRFLRSSWSLAMLARSSSTVVAPNDTNVLPFSAIPGLKGSIRNILEYTKGSFFDVVTKRFERYGPIYSEEILGTRIVNVSDVEATSKVLRTDRTFQMRPGLQAVEDAGDEINPDTGFGPISNDYEKWYHDRSLLAPKLKRLKDALETLPILNTVADDFVRRMQQQSRRDGTINNIEEQFTYWIIEAIAAGLFNERLGFYDQPPDPDAVVFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KWM7</accession>
    <name>A0A6S7KWM7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Helix-turn-helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002112</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018272">
        <property type="protein sequence ID" value="CAB4032263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KWM7"/>
    <dbReference type="OrthoDB" id="5982087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058912">
        <property type="entry name" value="HTH_animal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301:SF10">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26215">
        <property type="entry name" value="HTH_animal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helix-turn-helix" evidence="1">
        <location>
            <begin position="101"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF26215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21737" checksum="31CB5C25F388A3B3" modified="2020-12-02" version="1" fragment="single">MGPKNACSYADLAMGIIDEGAKSGEIKPNLWWRYRDDIFDLWTQGTAKLLEFTDFINSLYPTIKFTLVYSEISLNVLDLTLTLVDGLIRTDVYSKPTDNHLYLQRKSAHPDHCIKAIPFGVATRLRRNCSTEEDFDKRSKEYQKYLTRRGYHPNNVHKQFNKAKSIPREELLQHTKREKRILFPLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L6I4</accession>
    <name>A0A6S7L6I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A080788</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020497">
        <property type="protein sequence ID" value="CAB4034873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L6I4"/>
    <dbReference type="OrthoDB" id="5960555at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="15993" checksum="B92F63B5AFCA1141" modified="2020-12-02" version="1" fragment="single">GRRHDAGMLKDSGLLGSLELHAHNPDGQLLCLYGDPAYPLRPQLMAPYRVGDVQVLTEDMKEFNRAMSSLRVSVEWLFGDVANSFKFIDFKKNLKLRLSAVGKFYVVAALMRNILTCLYGNTTSKYFHIDPPTIDSYLGVHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LET6</accession>
    <name>A0A6S7LET6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021594</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022314">
        <property type="protein sequence ID" value="CAB4036703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LET6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12728" checksum="E6E84D378B37868D" modified="2020-12-02" version="1">MPIDKTDIKNIKLYHTGLAAKKSIADQSDWNINWPPTSEVISEEECAKLVPVELFNLLALVTNATEEVPPSDTFVEVTDEARAKLVSICMDIIYLSSNGRIQTPKSLALVLHCDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LKI7</accession>
    <name>A0A6S7LKI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MTSS1 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024721</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019475">
        <property type="protein sequence ID" value="CAB4033699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LKI7"/>
    <dbReference type="OrthoDB" id="10061327at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009898">
        <property type="term" value="C:cytoplasmic side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005543">
        <property type="term" value="F:phospholipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030031">
        <property type="term" value="P:cell projection assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007009">
        <property type="term" value="P:plasma membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.60">
        <property type="entry name" value="Arfaptin homology (AH) domain/BAR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027267">
        <property type="entry name" value="AH/BAR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013606">
        <property type="entry name" value="I-BAR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030127">
        <property type="entry name" value="MTSS1/MTSS2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15708">
        <property type="entry name" value="ACTIN BUNDLING/MISSING IN METASTASIS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15708:SF4">
        <property type="entry name" value="FI21477P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08397">
        <property type="entry name" value="IMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103657">
        <property type="entry name" value="BAR/IMD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51338">
        <property type="entry name" value="IMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="175"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="272"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="467"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="516"/>
            <end position="559"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="272"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="287"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="336"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="516"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="535"/>
            <end position="551"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="559" mass="63123" checksum="B727C5DBB5BD01A8" modified="2020-12-02" version="1">MVIRHRSIEQKLRVLSGLFGDSLIVPLQEKIDEWKKSVNHFDKENSKEYKQAKQDLKKVGSETVRLRKKVNKKGKFGQKERLEAVMKMASAQFGVFEEHQKRALRKVLIEERSRYCILLNLFQPVVEQEVSLLSDAENLSALLQEAARQCEKPNNLPDAGEHMIEDFKLSESGFLDEQLTPPSSPSNHRRQHSYSVSSGASSRSSSPSSRVGSPEKGTLTRSKSMSAASHRPAPPVRRSSVLSPQRENYMEKHLGMSRLSISSQDSATNQSYYSSMSSLDSQSVDYLPPPPAPVLPPAPPSPNPSEVSLPPPPSMEEILRERACQKSRTVDSGFYSSMSSSLDRSPSTSLAQVPYDDNDSGHYEAVVPYEPGTPGDPDGYYENPQYVSPHVKTYRSNSESMTSRVHGVHFQKRSMSYNEAERFDRNDIAVQHLRRVAFQDPRVKCFDLKTDLSAQIAANAAEVAAHFQRKDDKDDSPVSPGKWRPPVAKKNYFSPPTSPNHSPNFDQFWRQMENPRRGVDNEFLDDNYKARDPSTETTNSFLSQIQRQRSSMKYVAKHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LV20</accession>
    <name>A0A6S7LV20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037259">
        <property type="protein sequence ID" value="CAB4045013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LV20"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="20123" checksum="53112A36405EA384" modified="2020-12-02" version="1">MDRQSMEYKRSKTPKRSAYKKSKDETKLEVKEPCESCRVFFDGFNEESKGSFPPFGNCAEYDVIRTVNLDYELGCTETRKHWEVFKSACERHFKEFNELAKNLEELGNQSQNEIMETYYTNTRNAKVLKYQRYSDGYELVAIGARPWDKGPPGRARNSEMMVNNYKKMKIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5V9</accession>
    <name>A0A7D9D5V9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ultraviolet-B receptor UVR8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A067267</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000065">
        <property type="protein sequence ID" value="CAB3977730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5V9"/>
    <dbReference type="OrthoDB" id="10253607at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00065">
        <property type="entry name" value="FYVE_like_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="entry name" value="Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058923">
        <property type="entry name" value="RCC1-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000408">
        <property type="entry name" value="Reg_chr_condens"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051210">
        <property type="entry name" value="Ub_ligase/GEF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000306">
        <property type="entry name" value="Znf_FYVE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017455">
        <property type="entry name" value="Znf_FYVE-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22870:SF388">
        <property type="entry name" value="CLARET, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22870">
        <property type="entry name" value="REGULATOR OF CHROMOSOME CONDENSATION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16457">
        <property type="entry name" value="PH_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25390">
        <property type="entry name" value="WD40_RLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00633">
        <property type="entry name" value="RCCNDNSATION"/>
    </dbReference>
    <dbReference type="SMART" id="SM00064">
        <property type="entry name" value="FYVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="RCC1/BLIP-II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00626">
        <property type="entry name" value="RCC1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50012">
        <property type="entry name" value="RCC1_3"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50178">
        <property type="entry name" value="ZF_FYVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3977730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="567" mass="62340" checksum="CC12A018F1F0C356" modified="2020-12-02" version="1">MYSPLSAVLISQITQVLEGKKTKHFKDIQIPDDYKVLSISVLYTTDEGEQSLDFICEDKKEYDIWLIGLKALAVNGIQDKEFIQELITGDEDPDRSVKGIVSTLERNGSKKETDNRTGTGTGGTSTVRQNAESCDLYTWGDGTRSKLGHGEEIEEHRPRIVDALSRLKIKLVACGANHMLCVTDCGETLSWGAGSKGQLGQGHLRDRFTPLRVEALQQQNVVQISCNEYHSAAVTDEGKLYTWGYGSIKLGYETANEKQLTPKVVQSLTSYTVVHASCGKDFTLACTSDGQLFAFGNNEFYQLGLGDNVPRRDPTLVEFENLEDEHVVQVDCGDYHTAAISDGGNVWMWGTNEFGQLGTEDNFTMISKPCKLQISEDDSSTALITNVNCGSRHTALVTFNGSVYCFGDNTYNQLGKKNTVDGPAKCNRPERIKFPSGVKIKTVSCGAYHTAAVSEKGEIFTWGNGSDGKLGHGDDSSRFQPTQISECFDGKRVMSVSCGSAHTACTAAIRPRGSLVRKCMGCQKKFSIIQARCHCHRCNGTFCSSCAPKRPRRLCDKCFKIVQEEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DB62</accession>
    <name>A0A7D9DB62_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038476</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000309">
        <property type="protein sequence ID" value="CAB3980634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DB62"/>
    <dbReference type="OrthoDB" id="10065482at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="29182" checksum="EE37AE5BA95B889D" modified="2020-12-02" version="1">MLHPDYGEEAMYTWIERSLDQSMKELKKFAMNLKASSQNRLDNGTAEVSRLLAKCFDFEKLLLGLEGMRRPDSENQNAISCIKDKSSYLAMGRKDFEVWFRYIISLPHVQKKKDELHHYLDVSCSDALYHCFKECLCEMFWGNLNEYGVACMQSSGKYLSEYFVSLERDKSPGIRQTFVLTLLNGKKIKAVLDESKLIEMLYTVESIYTKLGPEFMLSLDIAMASGGSEAIAESFMLLWIRSDSDAISLIRSWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DCT8</accession>
    <name>A0A7D9DCT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase RNF4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A058326</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000414">
        <property type="protein sequence ID" value="CAB3981654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DCT8"/>
    <dbReference type="OrthoDB" id="6105938at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033768">
        <property type="term" value="C:SUMO-targeted ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032183">
        <property type="term" value="F:SUMO binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140082">
        <property type="term" value="F:SUMO-ubiquitin ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049627">
        <property type="entry name" value="SLX8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47094">
        <property type="entry name" value="ELFLESS, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47094:SF1">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RING-type" evidence="5">
        <location>
            <begin position="162"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="4">
        <location>
            <begin position="28"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3981654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24406" checksum="4F394EE79B0D16D8" modified="2020-12-02" version="1">MNSQNESTEIVDLNQSQASQNVVGNGNRKTRTTKAHSRAKRVNISRKRNREGQLANVGTSELASHNGSIEVIDVEQVVKDKPVVDLTDESRNDVYVDLTSSPDVQLPHRQSVIRWQLSPGRTNTSELNKNADDIVIVANGSERVVNVSSELSQPLIENIMTCAICMDDFNQIKKAKRQLTSTTCGHVFCNPCITSSLHAQAKCPTCRKRLTKKSLHPIFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DN28</accession>
    <name>A0A7D9DN28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001454">
        <property type="protein sequence ID" value="CAB3989269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DN28"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19182" checksum="84E87A7201039C22" modified="2020-12-02" version="1">MSQIFTEEETNARHAVSPLFVQEGKEIASVEGTTQGDPISMHMPLYAVSITLLLQKINVAHEGLTEEIVEQNKVREDRPAEPVQRIRRRVANERKKRHKVQLALLRSTMSAEQIRINYLAQLKSSSIWLTALPLADEEYVIHKLEFFEAIYLCCRWELKLLATHSAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DYJ9</accession>
    <name>A0A7D9DYJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054776</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003051">
        <property type="protein sequence ID" value="CAB3997220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DYJ9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="427" mass="47998" checksum="70A89CE4EE2C0210" modified="2020-12-02" version="1">MYVARITCRRSREGFDLKFNLDCHWSNALYKGLDHIQYATSANKVVLNRDDLSVFRFDSMATSNECASLCMKGNVSVSTKSDYQQKYPCTLQTTSYNFTGTNDEGELCAGVVKGAVIHSKNPAQHAADLEMIEEKEQFQTKFKNQQTGLPKELECIPVDSGSDEAPCFEQVQFWWAKRHFVKPTRMHLVTSRHSGGSNLNRVELQNGCEVKARTNLLVPMTLNGLNCDESGKTDNVKLKKNISDAINVHNSRVDQASCGDTEINLFRGSDSKANQILDMHVKSFLSGTKTDKDKLKLEHPKVYKEIKLIWDIQNAHVNTSVPQRAIFFLLYILMETPLKTEQKQNYSKCSKCLAENPPGIVSNVRTGFTNIVWLLKAQTLKGYGIATAAFRNLSANHVSSLNRQIKLMRKCYGLPVTDAEIGIIHCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DZS4</accession>
    <name>A0A7D9DZS4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TNF receptor-associated factor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A014206</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003297">
        <property type="protein sequence ID" value="CAB3998199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DZS4"/>
    <dbReference type="OrthoDB" id="5987964at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012227">
        <property type="entry name" value="TNF_rcpt-assoc_TRAF_met"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049342">
        <property type="entry name" value="TRAF1-6_MATH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21355">
        <property type="entry name" value="TRAF-mep_MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015614">
        <property type="entry name" value="TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3998199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="546" mass="63857" checksum="F25E80F3B99FBF6C" modified="2020-12-02" version="1">MSSLQQHKDCPLRLEKCSNEACEKLVNIEELEKHLKEECRYRKIDCRHCENRITIADQKTHYDEHCQRIPVECPQHCRNKFPREEIQHHVDEECEKTLIDCTFKPLGCVAKVERGNLRDHEVDMVHEYLSQAVQDINNLGQEKQRMSEEIKQLQDINNNLTQELRDLNEQEEARINIIDSDLQEFKEQGTIRLDDVQRATEQNFENARLTVEQNGEFQETLLCMQQDLGHLRYITIPEIQATCVSHQAEHKKLTKNQDTLQKMIIAVHNKLKSAIESLRDKMDAGLDTLRKAHEEERAARLEHEAGTAEEISRLHQDISENRRKFEKVEVALTITQEEMKEGFSEHCKQMQLDYDNVSRMIKKERQSRENDFVQVSEDISQMNSINTGVFIWRVNNVDGKLESVQSKAKPLYGQAFYTEPYGYLLQPKLFFDGARLTDQGYISLFIQIVQGPFDAILKWPFAKRIRFSLIEQESKRLKRNIEKVLIPAADADELRRPSDDANNGFGIYKFVSHEVLRAGRYIVDDVMFIKIEVLEEIEQNGHSETM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E171</accession>
    <name>A0A7D9E171_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003159">
        <property type="protein sequence ID" value="CAB3997674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E171"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="352"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="142"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="174"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="198"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="354"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="390" mass="43521" checksum="FFA83E2B1992FEE9" modified="2020-12-02" version="1">MDTDEDNILDNWENPPSSGSEMSRNGGIVQTQPTANAIGELDIHVQPSMPTTHESRHDQETDIHAQRSASTTPEAANEQETDLNAQPSASTTHEAAHDQETDLNAQPSASTTHEAAHDQETDLHAQPSASITHEAAHDQETDLNAQPSASTTHEAAHDQDTDFQAHPSASTTHEAAHDQETDLHAQPSASTTPEAANDQEKGNDPEASRAPTSLDSPTPPADLDHLISAPPEGWQLNSKTYFQKVAHLIKWCFNKKEVRKAHVHHYQERLRKAELRRTPEERNYWVVPDPTIDASMLMLGRQREIFNMEGFARAFPQTSAHLENLRKNANVRVMRDRCPFSLAVQALRVKSGEAEEEVEEEQELDRDGDPANPPLSSQTYWTKIKTWRPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8X2</accession>
    <name>A0A7D9E8X2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TASOR pseudo-PARP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A021948</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004607">
        <property type="protein sequence ID" value="CAB4003351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5960959at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045814">
        <property type="term" value="P:negative regulation of gene expression, epigenetic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046432">
        <property type="entry name" value="TASOR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022188">
        <property type="entry name" value="TASOR_DUF3715"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16207">
        <property type="entry name" value="SET DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16207:SF11">
        <property type="entry name" value="SET DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12509">
        <property type="entry name" value="DUF3715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TASOR pseudo-PARP" evidence="2">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="364"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1182"/>
            <end position="1207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1243"/>
            <end position="1262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1281"/>
            <end position="1340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1459"/>
            <end position="1690"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1754"/>
            <end position="1789"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1892"/>
            <end position="1922"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1938"/>
            <end position="2090"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="2120"/>
            <end position="2228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="370"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="384"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1193"/>
            <end position="1207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1292"/>
            <end position="1303"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1324"/>
            <end position="1340"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1463"/>
            <end position="1484"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1497"/>
            <end position="1510"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1511"/>
            <end position="1533"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1534"/>
            <end position="1551"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1614"/>
            <end position="1626"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1627"/>
            <end position="1638"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1647"/>
            <end position="1658"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1667"/>
            <end position="1681"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1770"/>
            <end position="1784"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1901"/>
            <end position="1913"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1943"/>
            <end position="1953"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1954"/>
            <end position="1964"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1970"/>
            <end position="1984"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="2007"/>
            <end position="2035"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="2037"/>
            <end position="2054"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="2066"/>
            <end position="2081"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="2146"/>
            <end position="2159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="2191"/>
            <end position="2200"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="2213"/>
            <end position="2223"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="2299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2299" mass="252845" checksum="C5B645141D23BD55" modified="2020-12-02" version="1" fragment="single">MGVYVARFPDMVSSYSIPPRTSKYLMVFKIAKGKLKAVGERTGDGCALEPTPNYDGHISKSFPCAHNVSLEQAFTSSQYYFYEFSDDGDDLHAKRPRQCCPYAVIQFSVTSSQSHHSLPRNVLTQDSSLRNLPSHESRHVSTQLVLSRNEKNNNDVTLMGMKSMVDGRMYANYSKQGRTLWSGVIKNKENILSSADLICYSSDILPITIGGNIDIKGKVSFEKLKPLFPSPIFKQLPAISSKCKVFDEGTMYLYCEVRPREKNNTKFAKLIKFFQHKNLAGVAEYPDSSALIYVIPTSDFSHQLGLTDRHYPNLLHAVILKRLPKEDIQSYKKMNKISADPITEAAVRRDIRKELRRIEIEKLKKREQSDSSSRASSDMEISSSDDRAESGAEKKKTEVKNEAAGVSVEVAKEKGTADAVVGRTDSESIGEDINYSMKTMQIEGQCQETHVLSAVSEIVDGATASKDSAKVLKDIETSPNKNDQQKMADAVEVFQSPPPIRKHAAVVAFDDTFDNIVPGTNTVTRHFMDPRLGCKTDRFLLASPIEVEPLSSDSGADTPEQSPVLRYPRTNEMSAGVVPQSDSVMDGTVEGTASTVIQTDKTSSEKDKVSRLSSRLMALFSQTGKRPPKSSASIETSLSTVTSSVSSATPTKSMVSSSLPVELKNITTECLATTSAHKLQTATPLLSIPPATLSASSNFPSAGDATVSSGCVVTVANDNKATVIDMQSSTTCASPTHLQTSFVTLGGSRIYSNKSTAHGESSSNSWGEILEASSGLYPVSFQQTAVTNSASTLSSYATASNVNSTTTYSTSLNNYDSESPLRQMCVAYPSAEASLEVSSIPSCTNTATTSFVLTATGSLTPSPVPSTYTTFNTGTPASTECETSTVQATVEQLYSSDRLAYPATNTARTVANTSEWVVPMAISKESEILPKSEQSPLFTSNTNLKQIISFFQAKTASQSTTTTTFLVSPSTSPSSTVNVSDEGSTNEIREAALSHKPQMTCGTSLSVTSSRYDRKLTEDFPQGNEPQKVQTSDDVATLETTQDYGRVEWYDTVDTQSYDDVQEFSSSSQTPIMGTYEAYSSGIVPIYSRDTVPAQTPVTGTYETYITDAVPTQTPVMGTYETYSSDAVYTQTPVTGTYETYSSDAVNTQTPVTGTSCEAYSSDTVPTQTSGMAKLYEKYSSGTVSTPRAVNTPPLPTEALPPPPPPPLTSSFSAGYTTAYSGNMNKDSLSYLTSTEREVYTYSNSCPEDHTNRAAQPTSHESSDLYEYGLTLSSDQATTQDASESYFCDGNTPSTDSSRSSTPVITMQEKQLKPGSVSQYSPTSTPPPPPPPPPPPPPPPLLCVYNNPVFHQDNYSATYAPLYTHPYSGIQPVPIPNPTLSEYHYPASGNTGYPTFPSSLTADFDSTSGFGYTKQITPLWNESSTVRSNEDQSLATNLDQHKHSKYVAEISSGEIVDINGTSKQDKSSSSKLSRETAENLRTKETAFPCGTLKSPEKNSSSSQTLSVGSKDNSDLNLLKHEEISGSRQSRETRSSGSGTHADTISDASPFQIQKDKSRTPESPSSVDKDVTTTTDNAESSFKPAITDEDVVTETKVVPFSQDPTEQGEFANSREISEKKPVEKYLAEDSETEQCEDEVLAPNCTDEVNMRDLEIEQKGKQTLSSSSENDRTIEQDSIKEDSPSNNSSVNHGWHEVFSETNLTDHKEVVDRLKQKRRDTAMRDDAVDRPLLGFHVSNVAEFLDSNDETYEEIPLSDEEIPSNKAGGMTKGAKKDKNPTTEGKCDDGSSDCQSIRTVSEYVDSNDETFIDIPLSEKEIGRTLGVDEVQKEEHIDDEWKMESYTDPSREINTGRKRERITDLRELIKEKKRKFASEDSEKRATSRNRRRVVEIVKHKSVVPDDSTSKRSEIADETSRNVASPVPDSEVVIPDLVKVVLENRRKMTSPDSGSCFSTPDHTETLDEMRRKISSPDFDKERRSASPESESRTSTPDWNPNEHRRLYNRRRAGSSDSSRAESSAGSRPGSSASSRHGSNAVSRPGSSASLRTGSNVSLRSESSTKRFPPPKRARVEKDTPDKTREQARSRSGRVLDINYPKNLSDRWLDEDYPTNLSDRGLGEGCYPSNLPLGLDEDYSRSSPVGSRRERQRSVSPSVSKSHYSYVSERDNLTPPLRLSPARESRYRSRYSIKRYDARSSSNDSGSSRARHHDRNNNNWSRHDERPDMDQTTKSQIDFSDETFLSRLLRPDVIEHLQGYVHNNLQRTLDEYPECLDEPVEKKKPFFGGIGEIIYAQRDEEESRYAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ECU1</accession>
    <name>A0A7D9ECU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083372</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005708">
        <property type="protein sequence ID" value="CAB4007132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ECU1"/>
    <dbReference type="OrthoDB" id="6771932at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="521" mass="58594" checksum="A044147D02496AD8" modified="2020-12-02" version="1" fragment="single">LVESPIRKCDKAIRASIKPEERLAGNENAPNDPINTAGDGEAVSRLDIEKLVPETVAKTLPVALSSVLAAGGLKSLGLITPTRSIEPAATDQVQTQPGPSRGNRFYTTESKVELSDDLRELTTQAFSKSLPKETWQGLLENYPLLEGTESILHAPTMEAAGGVLAYRTINHSSTYCSGSPSEAEEGPDPDLVKGMLEDALVLLGNANVRLNSWQQRRFSEYLTEVGKRTLIEEIPSDQHLFPDRFMTVSKMSLINKPHDKALSSARFIPSPQPFRGRSGATSRGNGNRKLRWNYTPEITIREPQNDCNPELSQQQAKAGYPFPRLTNIQLHTFPTTGSLIHCLENWKIITQDPWILQTVQGYKIPLIRSPHQWRLRETNPPLRQQHLMDNAVQELLNKAAIKLVQPVPDQFVSTLFLVEKENNSGQYRPVINLRALNQFVEPQPFKMESLQVVKALVQPGDYLMKMDLEDTYYTVPIHQDHCRYLRVIFYYRGNLYEFRCLPFGLSSAPRAFTKILKPSGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEC4</accession>
    <name>A0A7D9EEC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A046453</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005524">
        <property type="protein sequence ID" value="CAB4006502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEC4"/>
    <dbReference type="OrthoDB" id="5946103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4006502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="434" mass="49883" checksum="590CE11F32C3001A" modified="2020-12-02" version="1">MAPSKQVIQSIVASISAVVSLVTQMFGLVLIWGMNVSRQNNAIITMIARKRNYFREKLARRRLNILNRRPRSCWFKKGRTDLWWENMWNGIAPEECWKKNFRMPRESFMNLLAELNPYISPDLSSPNYRALSAEKKLALTLYFLKDTGSLGMTANTFGIAVNTASAVITEVCQVISRKMGPKYIHLPRSQESMRRKVSEFEAKFGMNQAFGCVDGTHIPIKCPAENSQDFFCYKQYHSLSVQAVCDYRGCFLDVECMWPGSVHDAKVFTNSSINIKLRDNKLPTTYQTLVEGRAKVPNYLIGDPAYPLLPFCMKEYKTCISNEEVIFNNMLRAARNPIECAFGRLKARWAILTRKMDFKLETIPKVVYACFVLHNYCEKNNVNVDQTVVNSQIEFIRRNEAEFQNNPDPIYSSNEEEGIVVRKTLTKLVLDTLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJ51</accession>
    <name>A0A7D9EJ51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028394</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007230">
        <property type="protein sequence ID" value="CAB4011674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJ51"/>
    <dbReference type="OrthoDB" id="10610350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="33342" checksum="9561077998965248" modified="2020-12-02" version="1" fragment="single">MEIYSKNGDCNKAKSGVYLERQDPSGKKRFKAPLPPITELPSSTLPSNRRLTKWNSTPVIHQDFSEFTFPLARKLPDLRKLDQKTFLRSTEHILATFYGLVFIIEGGEWHSLKSDYLPIYFVRISVKNVKYPFRILVIDNESDNHIRVVDFIVNSKTKTSIKEDAVCWQDQEKFGAKFSNRTLAFQFYDTISRMASTIKKANELESQHLDKMVDLEIHLPNSDVRTYKFYKTDTLKGALKMVCTKEKLRVNEYYFHHMQRTDDSLDMALRIGDLRTDKIRLISKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESD8</accession>
    <name>A0A7D9ESD8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051369</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009226">
        <property type="protein sequence ID" value="CAB4016706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESD8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="356" mass="40308" checksum="A3071CDA6E618836" modified="2020-12-02" version="1">MVLKKHLRVTKQTNGMVLPLSIEDESLTTGTASVLCEFAKDLNIIICKTDDHLTYNEHKKKFDINAACEHYKFYEEMDWHAKDMEKLRNQLEESEPDDFETMDNITVDPKPVDSCQGGSFKQRMKQASKNAKDVMKKLKNDILKFTKRKTECCIFSQTVDTGLILQMTMDKGCWITPVMIAVNNNQPDIVRILVKYGARTTRTFQGNIAMQIGNHEIIQILENQSLYETNARKTVREALGLSKELSSLVQSTDVKCSEENASLSSRSDVGSNFNLTVGDAKSASTLRGVRNRAPDEFGSFKEVPGDFHTQACVMECLSFISRPGGFFYTIRQVLKVTPKSFVGILRKETMKGTWMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HI46</accession>
    <name>A0A7D9HI46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073147</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000571">
        <property type="protein sequence ID" value="CAB3983078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HI46"/>
    <dbReference type="OrthoDB" id="407630at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005758">
        <property type="term" value="C:mitochondrial intermembrane space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006797">
        <property type="entry name" value="PRELI/MSF1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037365">
        <property type="entry name" value="Slowmo/Ups"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11158">
        <property type="entry name" value="MSF1/PX19 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04707">
        <property type="entry name" value="PRELI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50904">
        <property type="entry name" value="PRELI_MSF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="25470" checksum="85F94E7830FDFACA" modified="2020-12-02" version="1">MKLWSTTHTFRHAWETVTQAVWRKYPNDYNPHVKAIDVIDRHVDDEGRLVTKRVMGTQWNLPSWAIYLLGLQDMCYGIEHSVIDPKARTMTLKGRNLTFSGLVGIEESLEYSQHPEDKNATIMKQEAVVTVFGLSFSSYCEKLITETYENNSTKGRQAMEHVIGVINQEISDLAAGIEQATTKLNTEIEHATAVINSELNDIAQGAKSGFEQATRLNTAFCEQTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HJH2</accession>
    <name>A0A7D9HJH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Organic cation transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A055372</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001033">
        <property type="protein sequence ID" value="CAB3986557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HJH2"/>
    <dbReference type="OrthoDB" id="5970406at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24064">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 22 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3986557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="41391" checksum="DD21150B3EC6672F" modified="2020-12-02" version="1">MTLSVDQVLEKIGEFNKYQWILLGIFGYSVFAIGAFPVMIVTFITAEPDWQCVKGYNSSICNFTTSIGLTSDDYKARCDMPREAWTYVDGFTSTVTEYDLVCENSILQSVAQSCYWVGMLFGLLSGGYLSDKFGRKKIFYTGLVSVTIATWIMIFPKSFIVFITCRIVIGLGSGFRNATSFVMLTEFTTEKHRAKIGVGSFYFWVAGLMVLPLIGYFVTEWRYFLLATACFAIPCLFAWWFIPESARWLQLRGREDEARQQLAKIAAINGKEMPNEHLKKVEGSGEAGNFKHLFYNWKVAKITLISWNLWFANALVYYGVSYGSVDLGGNKYVNFALSSIVELPSNILCVVAADREPWFDKHGILV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKL7</accession>
    <name>A0A7D9HKL7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000969">
        <property type="protein sequence ID" value="CAB3986139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKL7"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="347" mass="39842" checksum="9AD06F5DF4343EA9" modified="2020-12-02" version="1">MKSILLYTFYRPPNSSLDSIQQLNSSLDDNPESACVLLTGDFNLPAIDWSLDHPSPTSVGGHLEDKFCLYLEQLISGPTHRDGNKLDLLLCNYPAIIRNVTTTSPEQYGYPADHHILEFAIPQNFSRSQPIKRIIFDYECGNFEKLRNALTNTTFEDMPSENIDHHRKEWFLTHVKNSIPVKVVTDTNSPPWIDGDVRHLLRKKYAALKRFRQSRTSARKQKQRTLSQSVKYLVRQKHRDYLGKVKDSFAENPKLFWRYHKSVRRHQVSNRPEIVYNGETAKTAAHKAELFNTYFSSVFTSPRSSTNLEAVTRSPLLRTELQLSDIVISVDEVTDCLKSLNTSKANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HPA0</accession>
    <name>A0A7D9HPA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033471</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000871">
        <property type="protein sequence ID" value="CAB3985424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HPA0"/>
    <dbReference type="OrthoDB" id="10437942at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15904" checksum="D3B7DFF3D3529C5E" modified="2020-12-02" version="1">MSRSRPGANLNTWRLADGVGRPTMYPIYQFLHILIRCTLLVIVQCQASESLDFCFNSTLEGFRLDATVLKTKGVSQLMECIVEFVNEPCCRSINYKKDFQNTEANCEMLHDVVYNTSEKVLERNSSYDYVYLLDPQKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUN1</accession>
    <name>A0A7D9HUN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Gamma-butyrobetaine dioxygenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A015914</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>L-ascorbate</name>
            <dbReference type="ChEBI" id="CHEBI:38290"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amine and polyamine biosynthesis; carnitine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the gamma-BBH/TMLD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001822">
        <property type="protein sequence ID" value="CAB3991295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUN1"/>
    <dbReference type="OrthoDB" id="406634at2759"/>
    <dbReference type="UniPathway" id="UPA00118"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016706">
        <property type="term" value="F:2-oxoglutarate-dependent dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045329">
        <property type="term" value="P:carnitine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00250">
        <property type="entry name" value="CAS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.2020.30:FF:000002">
        <property type="entry name" value="Putative gamma-butyrobetaine dioxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.130.10:FF:000001">
        <property type="entry name" value="Trimethyllysine dioxygenase, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2020.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050411">
        <property type="entry name" value="AlphaKG_dependent_hydroxylases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010376">
        <property type="entry name" value="GBBH-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038492">
        <property type="entry name" value="GBBH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10696:SF33">
        <property type="entry name" value="GAMMA-BUTYROBETAINE DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10696">
        <property type="entry name" value="GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06155">
        <property type="entry name" value="GBBH-like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0124">Carnitine biosynthesis</keyword>
    <keyword evidence="7 12" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gamma-butyrobetaine hydroxylase-like N-terminal" evidence="11">
        <location>
            <begin position="83"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="TauD/TfdA-like" evidence="10">
        <location>
            <begin position="205"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF06155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3991295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="55382" checksum="91CF5E48CBD217E2" modified="2020-12-02" version="1">MGFKVAIEISYDRSKFITRAEFEELKDVFNEYFTNISPKLAQTIEHDSDSNFGDFITKREPANTNRNSSNSGSYIKNVYKDLDDRCLKVIWSDDTASRFSYNFLRDNCKCPECFESSSKQKLFNTARDLMISIQIEEAGISEDGRYLKCNWPGGHESSYSLNWLQNMRTPEENELRQRNSDSLVKDELILWNREMMQDQILFHDYNVLMSEDKSLFDLLYCLYQYGIVVIDNAPTRNGVLLELAARIGYHKRTHYGEDFDVKDIENPSNLAYTNHGLPLHIDLPFLKYPPHIQLLHCIHENTLGGDNIFVDGFNVAKQIHENHPDAFDVLKSFHVRFVDFGTDAYGEFALGCSHPIINLNKHGRINGVLYNASVESESKGDCTPDELVAFYDASCILSKGLHDPNNVIDIHLKSGQIAMFHNIRILHGRTAFESTARERQARWLQGIYFDWDVVFSKLRVLQKNLGLKTPYLPEQSDDFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HV88</accession>
    <name>A0A7D9HV88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014449</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001811">
        <property type="protein sequence ID" value="CAB3991235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HV88"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14851" checksum="FF1CB15D731F21AF" modified="2020-12-02" version="1" fragment="single">MISTEVIEYEGEDNNLFLGHHKGSNEMITQILKETGNHKVVVVWKPQPLDRIVAEVEGTHAGIILMFSGPLRIMVHNPTIVHKGEQYLIEIVWVKRNIPSTFFSVVGKIISRVSDHLVIPLECKTDEDRAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HVC5</accession>
    <name>A0A7D9HVC5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="1">PPIase</shortName>
            <ecNumber evidence="1">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086525</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 5">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020001543">
        <property type="protein sequence ID" value="CAB3989741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HVC5"/>
    <dbReference type="OrthoDB" id="408413at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.100.10:FF:000048">
        <property type="entry name" value="Peptidyl-prolyl cis-trans isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="entry name" value="Cyclophilin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11071">
        <property type="entry name" value="PEPTIDYL-PROLYL CIS-TRANS ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11071:SF561">
        <property type="entry name" value="PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="Cyclophilin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="34661" checksum="9B32D68F4CCC0E8E" modified="2020-12-02" version="1">MVAKKLLSVYGLLKNVEFHQASGIIEDLYRQNKNEFQQPICKGMLEYEWVAFMEAKTKNVGGELWSFNAEVIVFEGNTLIGDYEKFMKWTETNYQYNDYRPLPLWHAMAKEKYKAHLLESKHHFVYLDIHVSSEPVGRLLIELYSDKCPKTCGNFLELCRGGQMEHEKHDSPLELTYKKSIFHRIVPNGWIQGGDFVTQKGTGGQSIYGALFEDENFSVPHDKRGVVGMANKGRHTNSSQFYITLQPTPWMDSKYVAFGQVIEGINALKILEDQETYNERPKKTCLIAYCGIFDVEKLWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HYX8</accession>
    <name>A0A7D9HYX8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">SUMO-conjugating enzyme UBC9-A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A054562</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein sumoylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the ubiquitin-conjugating enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002958">
        <property type="protein sequence ID" value="CAB3996837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HYX8"/>
    <dbReference type="OrthoDB" id="6600758at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd23798">
        <property type="entry name" value="UBCc_UBE2I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.110.10:FF:000013">
        <property type="entry name" value="SUMO-conjugating enzyme UBC9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.110.10">
        <property type="entry name" value="Ubiquitin Conjugating Enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050113">
        <property type="entry name" value="Ub_conjugating_enzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000608">
        <property type="entry name" value="UBC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023313">
        <property type="entry name" value="UBQ-conjugating_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24067">
        <property type="entry name" value="UBIQUITIN-CONJUGATING ENZYME E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00179">
        <property type="entry name" value="UQ_con"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00212">
        <property type="entry name" value="UBCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00183">
        <property type="entry name" value="UBC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50127">
        <property type="entry name" value="UBC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="UBC core" evidence="9">
        <location>
            <begin position="4"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3996837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="17954" checksum="91A56234B891C8DF" modified="2020-12-02" version="1">MSGIALGRLSEERKAWRKDHPFGFVAKPIKNPDGTLNLMNWECAIPGKKGTPWEGGQYKLRMIFKDDYPSSPPKCKFEPPIFHPNVYPSGTVCLSLLDEEKDWRPAVTIKQILLGIQDLLNDPNIKDPAQAEAYTIYSQNRVDYEKRVKAQAQRHAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I0C4</accession>
    <name>A0A7D9I0C4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001573</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002421">
        <property type="protein sequence ID" value="CAB3994226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I0C4"/>
    <dbReference type="OrthoDB" id="5985347at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="713" mass="80652" checksum="908BA9B52F11E349" modified="2020-12-02" version="1">MRLLLLLAGDIAMNPGPYKHTNRENQFVKCLALNARSLMSLHKTNIGNNLTDTNIERFQNLVSSEDPDIFCVNETWLNEDIKNSEILHSGYDIFRNDRGSRGGGVLLAIKISSFKSVREIQHGHDLEISMAEITTTSNASLLICSCYRPPNSDHSWLDKFNNFMNDVCSQHSNIVLVGDFNMPRISWDSPEKTSGDFAGLRTSLECLNLDSLITTDDNINHDWQQWKKAFLEAVSQHIPSVRVKGRNYVPWMNSTILHNIKKKNSLRLRIKKSPTPTEYLLEKFKTLRSSIKSMLRNSRSKYFDSICSSRGLNPKRFWSLFKFNNKTRNIPQKLSVKVTETKRTSAGNPADIAALFNNYFTSIFTTDPNIENYSSDALPYQSNNTIIEDITLSEADVFSVLHNLDINKAQGPDGIPARLLKETARQIAPSLTALFNKSLNTGVLPRDWKLANVVPVHKKDNKEHVENYRPISLLSLISKALERCVFNKIKDHVFEQINNGQHGFVPRKSCVTQLIEVFEYIGRELDLGKQVDVIYLDMSKAFDRVSHMQLLKRLRDFGFGGNILNWFRSYLKDRRQQTTVLGATSSALPVTSGVPQGSILGPLLFLLYQNNLPNSINHSKIATFADDTKIYKVINAKADASAMENDLANFQTSSANANLLLNTDKLRPSQQIPRVYSTVHDQNQDHLCSSDSISYPRSFSPRIRVPSLGSTNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2U0</accession>
    <name>A0A7D9I2U0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054166</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003714">
        <property type="protein sequence ID" value="CAB3999956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2U0"/>
    <dbReference type="OrthoDB" id="10217457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053320">
        <property type="entry name" value="Protein_DD3-3_O-glyco"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35170">
        <property type="entry name" value="PROTEIN DD3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35170:SF2">
        <property type="entry name" value="PROTEIN DD3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="333" mass="39291" checksum="A2B5BABD33FFB527" modified="2020-12-02" version="1" fragment="single">MAIRNILVSICLFLLLHESLYQYAKADVYFHNPRGSNNRLNGDKANRKNANRVFDSQNNAKGGYNVAEKNQKEEKNPEESDWFNMKYYMSGSGDSETILPLEWTNQHGCGHEDLNCNIVLQYKCQPTNIDASEGYRIMRNGATTTTPSYRKRSFKKYSKKKTRAERDAREDRVLNEAWEWYDKCAKRTRNKGLFTADQNLKNDDARSTRQNPQGNRHGYECPEERDYYPYWHPTDWTDIAVLANKEEDCSDYKEESFNTKFKGECMEKYPDEDRYRHASKYNNEDDCVANDGKWVNFYNYLEITEDTTEAECDENDNTMWEIPYRSDKIDQLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I498</accession>
    <name>A0A7D9I498_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002945">
        <property type="protein sequence ID" value="CAB3996787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I498"/>
    <dbReference type="OrthoDB" id="5968173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019391">
        <property type="entry name" value="Storkhead-box_WHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040126">
        <property type="entry name" value="STOX1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22437:SF0">
        <property type="entry name" value="FI21431P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22437">
        <property type="entry name" value="WINGED HELIX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10264">
        <property type="entry name" value="WHD_Storkhead"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="266"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="392"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="271"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="394"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="407"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="454"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="466"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="500"/>
            <end position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="627" mass="71087" checksum="120F1E4C72B7BCAB" modified="2020-12-02" version="1">MASENQASQSKPRSMLPRTLVVVLNPISDVPTTKLRRFSSRRFEKVFENFRQCNKQSISVQLQDAVDDIQFVGWISPFTLLIHGSTEDMDAIENAWVGRMLKPPSGFLIKEFGEISQLEMKQISQSQFISISDTLCEIVKGLNESQIAATFESVVSRLCSSFDSVVIPPMAAIKNCLDLLIGEQRLDFINGAYYFKSTVASKPREKLTTSPHILKTEIQGPSRHVLLSKKAVTEVKSYMKRGKLNGYERLESEKVKERTKIAKLDNTGNYEAERQKGHELNKNEQSLETKTNRKGKKNNVVKSSSLKVRKPNHCIPRRQFPYEELHSHAKQKELEDKKQTNKRNFFLGKLSRLFKMEDNNLASNDENDNDSDHGWEKIVTDAQVKLLSNQVETQQKRVLDQSWEKHNGRKKPKRIKERNVVSTKQIDTTRHGGNLSRNKNVQRRRTVYNQQCPSRASSTNASSHSRSSDRGNTRNKSIEQKTEWKSSLTREREDSAKQYSLSSDSESSCSNLNNSDNSLSSESSVELARKSFHYSEEDTTNVESWQASREDGASNFCSTQAICGDLELSTLSLNPTRKIASSSSSSDTSSIEHVEKHSIIPGVNYNGVLDQQNNLRSRNLVQLIGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAU6</accession>
    <name>A0A7D9IAU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068411</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004381">
        <property type="protein sequence ID" value="CAB4002542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAU6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="29019" checksum="C4578A6D8922F2FC" modified="2020-12-02" version="1">MNVASIKKYLKERGVTVNDYLKLALVTIAAAVEKIMLPLDPSYETNNKEKNVRQRLFIHDMQIADPFVIKTQNNFIDSPPFGLYHIFNHLIYHATEYDKQGLAAYKSYEDSRLLQITGDKSVTNDPCKWVRKPQRNTGPCRVEDQEILKGSLPSGKKRKREYNLLQNIDYDPRPTKHRKVHSFKAMKTFTNNLNVNVSPPPVILSLLKKHYLLTAGSKGFKKEPEVLERNCAIMKEKLEQFVKQTTMLTPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBK9</accession>
    <name>A0A7D9IBK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000091</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004282">
        <property type="protein sequence ID" value="CAB4002192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBK9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="10"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="469" mass="51809" checksum="6A4E67A9F1B0DD34" modified="2020-12-02" version="1">MSDAAKSDPKPSSSNPSSSGTNTEKKASRKDYYARRDASRVYLFENFVPWREFKKKHGLKTDADVAEMLLENFDATKSSRALCDVETQTEEANVETMELLSGISSVKSTTRESQVPPSLPSPSERTCDLNARTMDSTARRRLLSESSPVTAKSSSSRSLDPLQEETLTANESDEDMEITMTAKTISPSNERSQLENLSLKDEIFNTFTGHGGDEPEDKVEAGGDGVASNKYVSTVWEVTPQEAIRLEKCIVYTDTLMELLKSLHGSVCVRVGCKRALIYHTTYVGTCLVVSWKCDSGHVGGRWAAQPSCSNIRAGNLMLASALLLSGNSYTKVGLMFNFCNLQYFSQTLFNQYQQLYITPAINEFWEQTKQQLWEDKRGKDVVLSGDGRNDSPGHSAQYCTYSLADMDDNTILQMDIVDVREAGGKSNNMERIGFEKAMGVLLASPIVAKEVVTDGHLEIAALMSKCLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICG6</accession>
    <name>A0A7D9ICG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027373</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005447">
        <property type="protein sequence ID" value="CAB4006214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICG6"/>
    <dbReference type="OrthoDB" id="5959361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55464">
        <property type="entry name" value="Origin of replication-binding domain, RBD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="123"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="35823" checksum="094E1E0DDD1DB602" modified="2020-12-02" version="1">MSAIQQDIPNSSPLQRSVFLITFSQCDASGLAKPDFAKVIVNAWKSCYRSKVLQWVVSEEQHQNGGRHFHMAIKLNTKSRWLRARNYIDEKHGIKVNFSDHHDNYYGAYKYVTKEDAEFIVSPDHPDLSNTTDPPKTSNATKKRKCNRKASKNKRKRLSTFDVVQIIQHHKITCRLELMALAARWKDEGKTDLAEFVSNRGSKVVNDALETAKELSCAQERLLRSKKSRIEFLKDQLGKTCEGGCDGAWQRAALEILDMNGIQKSDFSSAMVDVVAEGFIQLLNDEDKVGEAMRIVNGRIDYHTFPSDEAVLKSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IFS7</accession>
    <name>A0A7D9IFS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037510</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005324">
        <property type="protein sequence ID" value="CAB4005829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IFS7"/>
    <dbReference type="OrthoDB" id="5976508at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="36454" checksum="9C2B318BA9E42754" modified="2020-12-02" version="1">MSRVFFLSATALLFTLCFRSSFENLCSNRFSDPQCRRRNQICCNGACNSTCVGKRCRWDFQCGSRSQGHKCCAGHCRTNCEGLVCHTNSDCKDRSLKCCNNICRKDSCLGSSCNSLHPSYRTCGWHRGKRLDCCSGRCELSCQDKPCFDNRDCGGWGRSRMKCCNGVCKKSCRGSSCLEHRDCQSSKLDCCGFFENRTCARSCLNHGCSLAEVKECGRQRYPRLFCCGDGTCRRTCEGSICYTETFRYDCGSPEKLLYCCGMGQKECHRSCGHVRCEKNEDCGTSQYYCGRPNRHNISMCKFTHVSDILVFHDVRLDSLDFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9II47</accession>
    <name>A0A7D9II47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045984</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007000">
        <property type="protein sequence ID" value="CAB4011015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9II47"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="71" mass="8356" checksum="473116111A1F7F1C" modified="2020-12-02" version="1" fragment="single">MWISFTDAIPEPPRLRIGNELIERVNAFKLLGVSFQNNLKWNAHVEEITRKANKRLYHLRECRKSPLPAEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZ46</accession>
    <name>A0A7D9IZ46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nephrocystin-3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A027631</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009501">
        <property type="protein sequence ID" value="CAB4017331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZ46"/>
    <dbReference type="OrthoDB" id="381520at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45641:SF19">
        <property type="entry name" value="NEPHROCYSTIN-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45641">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0802">TPR repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="17690" checksum="8A8668D6D12234CF" modified="2020-12-02" version="1" fragment="single">TEYRQFDPAKDYYQRALEIREKQLGPNHFHVAVSYNNIGLVYRIKVYRKKVFYEIREKQLGPNHFHVAVSYNNIGLVYRIKGELDQAKDYHERALEVQKKQLGPDHVDVAFSYNNIGSVYHKKGELDQAKDYHQRALEIREKQLGPNHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J044</accession>
    <name>A0A7D9J044_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022131</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011080">
        <property type="protein sequence ID" value="CAB4020697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J044"/>
    <dbReference type="OrthoDB" id="8922241at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16386" checksum="EB54AC0807FF2977" modified="2020-12-02" version="1">MDRGLYNIVVLLDLKKAFDTVNYEILLRKFERQVPHSKDKVPHSEDKVPHSEDKVPQSEDKVPHSEDKVPHSEDNVPYSEDKGPHNEDKVPHSEDKVLHTEDKVPHTEDKVPNSENNVRLSEDKVPHSEDKVLHTEDKVPHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3J8</accession>
    <name>A0A7D9J3J8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Guanidinoacetate N-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068160</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011278">
        <property type="protein sequence ID" value="CAB4021119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3J8"/>
    <dbReference type="OrthoDB" id="19014at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030731">
        <property type="term" value="F:guanidinoacetate N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006601">
        <property type="term" value="P:creatine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051038">
        <property type="entry name" value="RMT2/GAMT_Mtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026480">
        <property type="entry name" value="RMT2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32379">
        <property type="entry name" value="GUANIDINOACETATE N-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32379:SF1">
        <property type="entry name" value="GUANIDINOACETATE N-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51559">
        <property type="entry name" value="SAM_RMT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="26309" checksum="53253EA597FC84BD" modified="2020-12-02" version="1">MATEEAVYRKGEDYKNVWDKAQTKHTDTHLEIMGKPVMERWETPYMHKLAEIATSQGGRVLEVGFGMAIAATAVQSFDIQEHVIIECNGDVYKKLEKFADGAIPKVTPMKGLWEDVVSKLDDGSFDGILYDTYPLSEETWHTHQFPFIKEAFRLLKPGGVLTYCNLTSWGEYLKGSYSDISKMFEETQMPKLLEVGFKKENISTETMKISPDKECRYYSHGEMIAPRIIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGZ9</accession>
    <name>A0A7D9JGZ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016299">
        <property type="protein sequence ID" value="CAB4029623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGZ9"/>
    <dbReference type="OrthoDB" id="10218882at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="65" mass="7342" checksum="1AFE92E24C2FEE09" modified="2020-12-02" version="1" fragment="single">MAVRTRSLAVMTRFPAVRTMYLAVRTGFLVVRTGFLAVSTGFVAVRTRYLAVKTRFLAVRTRFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPK3</accession>
    <name>A0A7D9JPK3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A077929</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020018732">
        <property type="protein sequence ID" value="CAB4032825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPK3"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF6">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="180"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="509"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="509" mass="56812" checksum="173FE6B0CCFCB97E" modified="2020-12-02" version="1" fragment="single">IEIDRDVIQSLPENVIADELRYVIDENELSVHVENEGPLQDPVMSANASVAELVLGSGSTSFIPMHQRQGTEGAAIQDAVNEVDPLDWPSTEGNLVYEFKTDDLATMAFPTLFPHGKGDPTNRARQHGMTLIEAFKHLMKFAERLADDGQFHECEPNGELPIREYRDLQGDSLQWLQLRLEGKRFLIIDEMSMIGHKMLSWLDNRLRAGTGKEDIPFGGMSVILMGDFGQSPPVGDKPMYVSDQVMCQAGQDPEAVAFRALLMRMRNGEVTEEDWKLLLEHSTTSVPMDQFTDAIQLYFDKKGVAEYNYEKLLQLGQPVAKIQAKHSGHGASVATSDKAGGLDAVLFLSTKAEVMLTCNLWAEVGLCNGSFGTIEQIWFAENMGPPNLPIAVFVHFHSYTGPAFLDACSKCIPVPPKVFEWMADGKYLSRQQVPLRLRYAMTIHKSQEQTLTKAVVELCKGEKVAGCTFVAMSRVVRSIHDIVFEPMTFDRLKAIGRSRNMQKQLKAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRS0</accession>
    <name>A0A7D9JRS0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024187</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020107">
        <property type="protein sequence ID" value="CAB4034428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRS0"/>
    <dbReference type="OrthoDB" id="10069551at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="288" mass="33420" checksum="9A2A352A5A2DA483" modified="2020-12-02" version="1">MPVFCELDTGKVPFTKSKVSYRNLSAMNLGADLSNSDLYKNTDMFDKNELAICYNEILESAINKHAPLRTKTNFSRPYVPWFNTEVKSAKREQRRAERKWRRTKQLDGFEIYESKKNYMIFVMNRVRKKFYTDFVLEHSSDQRILFNAAKSLFHQKNDLNFSAYEDQNMLASDIGEFFVQKIENIRNELDLSDSHNCVLDESIALNACLDPFEQSSEEDVKNLITKSNGKTSSLDPMPTSIVVQCQDVLLPVLTRMINMSLDSGVFPDKWKVADVRPLLKKWNLDTCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRT1</accession>
    <name>A0A7D9JRT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc transporter ZIP10-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A088454</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ZIP transporter (TC 2.A.5) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019713">
        <property type="protein sequence ID" value="CAB4033982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRT1"/>
    <dbReference type="OrthoDB" id="5974934at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140410">
        <property type="term" value="F:monoatomic cation:bicarbonate symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005385">
        <property type="term" value="F:zinc ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030003">
        <property type="term" value="P:intracellular monoatomic cation homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071578">
        <property type="term" value="P:zinc ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003689">
        <property type="entry name" value="ZIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050799">
        <property type="entry name" value="ZIP_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12191">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12191:SF37">
        <property type="entry name" value="ZINC TRANSPORTER FOI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02535">
        <property type="entry name" value="Zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4033982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="26682" checksum="535B47781994BB03" modified="2020-12-02" version="1" fragment="single">WGYSVLAVAIISLLSLVGVAIIPFMNRIFYKISLVFFIALAIGTLAGDALLHLFPHALGFHASHDHAHGTGSSDESEERDHLWKFLVATAAIYGFFLFETITHLILGKSGHSHQVEHTPEENNVIGVESRTEYRNESCVLTNMAYINDESENQRSHNDKIITTKKEKAAVIENGCDGISPEKSSAIKKNGEEKKSISSVAWNIIVGDTMHNIADGIAIGIAFSNSISGGVSTSIAVFCHELPHEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JUG6</accession>
    <name>A0A7D9JUG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077011</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021460">
        <property type="protein sequence ID" value="CAB4035879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JUG6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13872" checksum="0B1DF4D915FE0000" modified="2020-12-02" version="1">MSGQTVRALSNIPAGSRYTETLVVMGAYIRILTKLREVHWISRLRRLGRKVNKKCNGCKRFRAVAVGNPSPENLPTDRTFGFSAFQMIGVDYAWLIPYSTTKNRERKSYILLFEMFYLTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JUI4</accession>
    <name>A0A7D9JUI4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021274">
        <property type="protein sequence ID" value="CAB4035679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JUI4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="51" mass="5236" checksum="3DD7FA4502726158" modified="2020-12-02" version="1" fragment="single">MIGGGGSGCGRADHGIGVTEENEAKFGSGQGYDFGNKADNVVPTTYSLNLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JZJ2</accession>
    <name>A0A7D9JZJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Importin-9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006750</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024372">
        <property type="protein sequence ID" value="CAB4038582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JZJ2"/>
    <dbReference type="OrthoDB" id="431626at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001494">
        <property type="entry name" value="Importin-beta_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03810">
        <property type="entry name" value="IBN_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50166">
        <property type="entry name" value="IMPORTIN_B_NT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8350" checksum="044B8681417705E7" modified="2020-12-02" version="1" fragment="single">YGIHLAQLSVDVNGALPIRQLASVVLKQYVQVHWSSISEKFTPPETSGKAKAVIRELLPRGLQDSTSKIRSSVFVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8T6</accession>
    <name>A0A7D9K8T6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020921</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029396">
        <property type="protein sequence ID" value="CAB4042063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8T6"/>
    <dbReference type="OrthoDB" id="6083927at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="26337" checksum="4E91E8A902B2FDA5" modified="2020-12-02" version="1">MVGGIDEKLTSHLSRVPLVNQYGKTVFIKAYGIERITSDFQAVNLDGVVHLFKGVSAEEVAKPTGSVDLLIGYEYAGFHPQLERRNGHLLLLKNQFGKCIGGKHPSIKETHPTSELTSVRANHVNAINVEDIYNIEEEKELKLIKSKLTFDDEEKKWTAEYPWTRNPQELPDNRRAATRDANEEEPNHEMEQNSEMEQNNEITSDVEERQVDEERPHVNQVHESHESREV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KYG2</accession>
    <name>A0A7D9KYG2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048805</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011778">
        <property type="protein sequence ID" value="CAB4022055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KYG2"/>
    <dbReference type="OrthoDB" id="5988990at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="476" mass="54101" checksum="CEB468E6246AF031" modified="2020-12-02" version="1">MRAVNKAIQRERHITPAIDDVIADLNDAKVFSKLDLNQGYQQLELSEESRYVTTFSTHGGLRRYKRLNFGVTSAAEIFQNTIRETLEGLNGCINISDDILVYGSNQKEHDNNLKSVLERLQSRNLTLHKLKCEFNKTSVEYFGYVFSSQSISPDTRKVEAIRNSQPPSNPNEVRSFLGMVNFCARFIPNLATLAKPLRDLTKQHVKWKWTSTEQHAMDSIKSVLTGETTMAYYNPSHKIEVLVDASPVGLGAILGITVLRHPLERLFNDPPSKPPARIERWLLKVQPYRFNVQYQPGSDNPADFMSRHPLPSSPTSHEERCAEEYVNFVSMHAVPKALTLEEIKEATKADTTLQAVIQAVQTKQWHNAKLQPRVDRKSVECFFHIQNELSVNSDQSLRLRGTRIVIPSKLQNHVIDLAHESHQGISRTKQLLREKVWFPTIDKQVEGKVSCCLVCQVTTNTSNIEPLHMPEASKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L0V3</accession>
    <name>A0A7D9L0V3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ankyrin repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A073298</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012100">
        <property type="protein sequence ID" value="CAB4022694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L0V3"/>
    <dbReference type="OrthoDB" id="5950802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050776">
        <property type="entry name" value="Ank_Repeat/CDKN_Inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201:SF2">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13857">
        <property type="entry name" value="Ank_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4022694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="722" mass="82151" checksum="9754A1BA718830DA" modified="2020-12-02" version="1">MLVLRKESPEEYLDEIRKENAQNSKNCFGIPTLCSAIHKFRSAYLVEELLKDGATVNAFTCMKGLRLNGITRSRYKQWGDYSAIHLAVSLGQHEIVSLLLTHGADLTSKTTKGISSLDFVLDPDIRCEPNEIQITEKDDLEILKIMKNEALDLTRKDHISQSTVLHRAVTRRCLEIVRYLISVGVDVNCIDRTSSTPLHHCTWNNMETLRILLENNANPNAQNELGNTLYHHIFGHYRRKGNENLLPFLHLLHKFNANPNVQNDGGETALHECLKNIQYMHNQIKSVNFMLRQGADPNIKDIFERTPIYHLLFLPNSDMLYLIRSLLTALIQFGARLDHLDIKGTPLLHILVYGQFFHSNQFDAQLWNEILHPKYKVNLNVQDYCNRTVLHFAAAEGDWKFGEVFLKHRGNLDILDCDGNTPLDVAVLCKQWEFAKNVLLWPFVVGQRRDFGGKQASGHIDEDTTKNTISSGNSGCESLLFRSLALANYDNDNNNSNNNNNNNNNINNNSNDDNGNNGNNNNSYNNNNNNSNNSLNFNNQNQRHSGALRQLQKSNSMPSLESKKRGGTSVIPLGSSVKWTKAKLDTIAKHVVIEGNHLYFTTVPLDPLCFWEIDLSPKPKISENFSTQINESSLLRLCEENSLEFHLTKACGEEHCLLAQQVFSLVSDLLTKCSEMDPRMKSKFHWTGSSSEGTKMWLPDEFDFVMELVELQDCCYIDDNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L4S8</accession>
    <name>A0A7D9L4S8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Mediator of RNA polymerase II transcription subunit 14 C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045157</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013445">
        <property type="protein sequence ID" value="CAB4025152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L4S8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056877">
        <property type="entry name" value="Med14_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25069">
        <property type="entry name" value="Med14_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mediator of RNA polymerase II transcription subunit 14 C-terminal" evidence="1">
        <location>
            <begin position="13"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11445" checksum="B27F04F6E5236033" modified="2020-12-02" version="1">MDGPNIGFGKWLLVIFIQLTRSRSSGNEDNAIIVPIYLPPDNGTTPSQVTSLDNIPNDSSIKLSPHIEAVISHLKTWSETTHRLPGTCPLYPAVLSLLKSLVVPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6E1</accession>
    <name>A0A7D9L6E1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028236</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014061">
        <property type="protein sequence ID" value="CAB4026192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6E1"/>
    <dbReference type="OrthoDB" id="6123456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012934">
        <property type="entry name" value="Znf_AD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07776">
        <property type="entry name" value="zf-AD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00868">
        <property type="entry name" value="zf-AD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51915">
        <property type="entry name" value="ZAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="36312" checksum="2A3461434584283B" modified="2020-12-02" version="1" fragment="single">MENNSTQSTPRKVYLKQKHKGCCRLCGCETESRRMTNVLSVAAVQKFLVKIISESCGIFIQRSDGLPTAVCNKCITFVKKIHVFIGKCQQAQTDLKEQVTVKRYPVQSPNISNKKPAKRQSMSQDDESIEEPEMDVPGPSTIHLDIAQSTTTSTRSVRSRLDFSSTANSTVIPSSTLITARQIEKITAAARTEDASVLAYIIMKYCPNVVREVKRKITDDINASCKNLCLRNKGSILHAGRQDSCGMMINFSFEKLWEEMETNIPFVMEILNAITGVEGGKAKQDLRVKYGFLYSILMNVRWHELSLIQRLNTLCLIEGGCSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L798</accession>
    <name>A0A7D9L798_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014655">
        <property type="protein sequence ID" value="CAB4027190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L798"/>
    <dbReference type="OrthoDB" id="27341at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00584">
        <property type="entry name" value="TLDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19080" checksum="C138148FAEA3DFBC" modified="2020-12-02" version="1">MEWLNNKSTWTLCWQASRHGWAASTFHTNCDFKGPTVTIVSVDAGKYVFGGYSDISWEGIMYVQKQSSSAFLFSLRNKDDLEPFKSLIAPGYELWAVYQSPYTGPAFGQDGIELYVSDNAQFSTCEANFGQVFKPPPGYKFNRKTTKVLLGGKEKFLPSEIETYYLADN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L9E0</accession>
    <name>A0A7D9L9E0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ankyrin repeat PH and SEC7 domain containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007563</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016330">
        <property type="protein sequence ID" value="CAB4029673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L9E0"/>
    <dbReference type="OrthoDB" id="1577640at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335:SF1">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="18942" checksum="C1BF94A2BB12A078" modified="2020-12-02" version="1">MAAVMNIDNLQWSELICKIGLKEVNEILDKRFEYIFTTLRDLASVFTSDRTLTERVSALKDEWFPARDQYERSVIHLASLNGNTRLVRCLVYSGCPINIRDGIGQTPLTLALHMGHTITAKVIIECGASVRDELFPDTVPPLQIAKVKGDNIMIDTENTGRRRSYSPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFJ1</accession>
    <name>A0A7D9LFJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086731</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017508">
        <property type="protein sequence ID" value="CAB4031290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFJ1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="22640" checksum="372F1465028AD320" modified="2020-12-02" version="1">MYFKSYCCDNKYVFLKNSISIAGRTYNIEAGKYEVSTGKIRSVYPSEVKRCVIKYVEKSEVDIVVNVIVKIRKLLNSENLKYCPSMRFHLVRVCSALGIEPNEQLRDLYPSNIKAKHEFLFYGIIVPTIDLNVSNCKYFHEWYRDLRQRARDLGNVCIGPEWIDWNDRWEEFWYREGNGMNDKFIMCGRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LGB3</accession>
    <name>A0A7D9LGB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BTB POZ domain-containing POB1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085803</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018345">
        <property type="protein sequence ID" value="CAB4032369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LGB3"/>
    <dbReference type="OrthoDB" id="5982674at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd18186">
        <property type="entry name" value="BTB_POZ_ZBTB_KLHL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045890">
        <property type="entry name" value="POB1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46336:SF3">
        <property type="entry name" value="BTB_POZ DOMAIN-CONTAINING PROTEIN POB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46336">
        <property type="entry name" value="OS02G0260700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="472" mass="54696" checksum="45F66DE245860BEB" modified="2020-12-02" version="1">MSNFELSRSDLLELCASEYNMPELSDRVLVFDVMHEGWGTTRLLENILTTAPNEVTASGEYQGNELQQSEDLNDPLSDSLEKSNTPVLHRIPERLLRQHKIYVHSFWLSIHSSYFRSLFHSSGMKENQEKQVHMKISELEENAHLVLIEAIYRDDVLGDKTADEQLAVLELASKYDLKFVFKKCKYILQTNPIPFEISTKIMHVINVKHNMNDVGDLVEILQPILVKEFSPLDENWQSDKFTSLSEVCLEYVLSSDDLIVASENTVFHALMYWMEQNDVDPASLEETNDLLAVVRYKLVAIDYLYNVIKNHPIASKMPKFSEFYHGGLTYHALPSEQKKLFQEKPVTRKKPEGPIIQHTFVVEEEDFKTAVENGSELNSEKFWACGYRISVGIQPSSNDILYPYMIVHNLNRESYVPLKFTFLKERETQINYCPWKEKAFKANSCRENYLRSFTRGYFGNTIHTLYVAVTLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHD4</accession>
    <name>A0A7D9LHD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028206</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018642">
        <property type="protein sequence ID" value="CAB4032731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHD4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="16214" checksum="6612EFCDB801B997" modified="2020-12-02" version="1" fragment="single">VENLAIFFKEINQTLSLMSPKNFPKERQQETLVLLNNLVYLVKDVKQHLKLNQVEVLSRLVECLISIIVLQKKGIDLEDESGNENESDENLSTPFQLADIPHEMSSLFEKQCEFVENFVNTKLSSFLENSDVTDWKQELQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJF2</accession>
    <name>A0A7D9LJF2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A040690</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020315">
        <property type="protein sequence ID" value="CAB4034667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJF2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043781055" evidence="2">
        <location>
            <begin position="24"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16701" checksum="6632DE3225810FD7" modified="2020-12-02" version="1">MKCWTILALLVAICAVFLGVGHTEETTDDLNEAALEDAYSDTENDVQLADSSVNRENDYAHDENNDDDDGDDDDDDETENAVDSVKETPSNDDDKAEISKRTPWGRRRRYWPRRRRVWPRRRRVWPRRRRVWPRRRRTLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LS79</accession>
    <name>A0A7D9LS79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A059710</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025468">
        <property type="protein sequence ID" value="CAB4039492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LS79"/>
    <dbReference type="OrthoDB" id="2441647at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd16449">
        <property type="entry name" value="RING-HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4039492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="620" mass="70259" checksum="45E0BFFCCB4ECF8B" modified="2020-12-02" version="1" fragment="single">RVNMASNYPLGYDDERFESIVNQNFHCLICYNVLKDPVTCRRNEHYFCRGCITEHLRRNSHTCPTCADELSVETLQDVPRIVKNYLNELSIRCDHYDRGCRELVQLQNLKRHITECGFTPVVCGNQGCGETISKRDRTYHESELCQFRKLKCHNCGEISTMMAEMKTEMANIDTKIANINTKEISIMMAGIETKIENLDTKMANINNNHADTRTKLANTNTSMGNIRTKMANMDTKMADIDTKMANTDTRLENTNTKLENMNTKMANLHANVEAKFEAMNNEVRGMKMSLNEVKDGFDHLKEAVLEKIESKERKQEEITRDVSGTASGGRENQHIFVAGGYMRNSVEIFNCHQTLLSKPMPENRHSASSFVYNNHVTVAGGYCDGHVDNMIRMNIHPVPDLSINWSDFAAKLPAKMRAHSSVVYKDSLLVTGGYNADQRVFSDCIHEVQLKPPYAVRLASKMPEPRVRHNTVLCNDSILIVGGTKSWDSEDNLSSVLSYDIKKNVCQQLPALTYPVSEMATVKWAENVVIIGGADKDGKALNNVIIYNMKTGNSHMLPPMLHKRKGCMAVVIENTIVVLGGEDERRNDLKSVESFNFERFSWQELPDMKEERCWATAVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZS5</accession>
    <name>A0A7D9LZS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110045991</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058643</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027274">
        <property type="protein sequence ID" value="CAB4040804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZS5"/>
    <dbReference type="OrthoDB" id="5947805at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052925">
        <property type="entry name" value="Phage_Integrase-like_Recomb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605:SF3">
        <property type="entry name" value="P CELL-TYPE AGGLUTINATION PROTEIN MAP4-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="24971" checksum="F5D8F1AC99E7A407" modified="2020-12-02" version="1">MSKKSEMPEGGQTRDRRPITVKELELLYFALCPQFTDSIDNVMLWAAFTLAFFGFIRCSEFTCNSSFDPDWLLSRNDITFHPNLLHADSYEVVIKRSKTDPFRRGYRLTIGSSHNKLCSVRAMKTYLLQSPSVHTPRPLFAFESGAPLTRTTLTSHLRSLLQGQGLDEKRYASHSFRFGAATAAGTLGRWTSDCYERYIRTPQEVLVSVPYKLTASTRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FHJ8</accession>
    <name>A0A6S7FHJ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A068340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000161">
        <property type="protein sequence ID" value="CAB3979024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FHJ8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005319">
        <property type="term" value="F:lipid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.230.10">
        <property type="entry name" value="Lipovitellin, beta-sheet shell regions, chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015819">
        <property type="entry name" value="Lipid_transp_b-sht_shell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015816">
        <property type="entry name" value="Vitellinogen_b-sht_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001747">
        <property type="entry name" value="Vitellogenin_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01347">
        <property type="entry name" value="Vitellogenin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56968">
        <property type="entry name" value="Lipovitellin-phosvitin complex, beta-sheet shell regions"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Vitellogenin" evidence="1">
        <location>
            <begin position="3"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="18816" checksum="76CBC5A36520F59B" modified="2020-12-02" version="1" fragment="single">MIFQVTVLGKCKTAYTIINEKPYYKVKRVVDLTNCADKPRVCQFSLPNTDAFYQKRVGRGTAKVLPNFVRNAAYMHYDLDGDATKGFIIRKVVSEHVAEMTLNGDQYQAGKAVAAHSKQELTLCAKAQPIPAGAKVIKVEQKRGGLLFIFDQDKTDIESAVGQANFLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPS5</accession>
    <name>A0A6S7FPS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000423">
        <property type="protein sequence ID" value="CAB3981725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FPS5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="10095" checksum="E7645C6D4F8382E1" modified="2020-12-02" version="1">MASLGQVEAEMLKIPACSPDINLIENIFHLVKSQLNKQAVTENITSESYEQFQTPVLQVLRTFPIDIIDKTIDSMSNKMISSKGYRTKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FS29</accession>
    <name>A0A6S7FS29_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Arginine N-methyltransferase 9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A076755</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000147">
        <property type="protein sequence ID" value="CAB3978849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FS29"/>
    <dbReference type="OrthoDB" id="5980806at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042054">
        <property type="term" value="F:histone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016274">
        <property type="term" value="F:protein-arginine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.160.11">
        <property type="entry name" value="Hnrnp arginine n-methyltransferase1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025799">
        <property type="entry name" value="Arg_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055135">
        <property type="entry name" value="PRMT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11006">
        <property type="entry name" value="PROTEIN ARGININE N-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11006:SF60">
        <property type="entry name" value="PROTEIN ARGININE N-METHYLTRANSFERASE 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06325">
        <property type="entry name" value="PrmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22528">
        <property type="entry name" value="PRMT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51678">
        <property type="entry name" value="SAM_MT_PRMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein arginine N-methyltransferase" evidence="4">
        <location>
            <begin position="556"/>
            <end position="655"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF22528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3978849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="680" mass="74591" checksum="C1C7E70829DF482F" modified="2020-12-02" version="1">MLNDKERNQAYRNAIDRAVKNGCGRVLDIGSGTCILSMFAVQSGAKEVYACEMSKTMYDLSLDILSANQMKDSVHVINKKSHDLTIPGDLPGQVSLIVTETLDCGLLGEGIISTLTHAKHELLAANLKAQIIPKGAIVYGQLIQCEKIRNYSQVKQAIFSHDVSSVHIRGAEISEKGEEPYTTEEMSCIDHVTLSNPFHITTYDFQTPENYMEESKDNLNVSIVRSGCLDAIMVWFELRLDAQETLSSAPGHSVCWEQAVYPCRLSEGEQTVEASDEVILNVRLTSSAICLDVLDITRSQSIQPSPKVDGILSSQELSKLNDVESGHAVPASCKHNTSTNLPYQELNKLNDVELSESITLPYQDISKLNDADLTESCNEALSDAFEKLKLSSTNYSTLGCIVLCSSLTFNPLFALWSGLSPVVCITNDTNFMQCLKTLAGERECSGSLRFMDKPLEVLAGTEGWGVLIIDPIEPGGQLRQGVVEDIVLAKGCVLPKDVGIVLPRKIEVWGMLISSRSLCQKSHVTSDDVTLGLDIAGFINTFRVKNQIDFDVKSNPFVSLSDPALLLTLDFMKPHDDDSLLSLLNVTCDTHMTASKQGKADGLMYWFNLGYTEGKTVSTDPETGCHFNQVVIMFKEKVDVISGQKLVVRTSCKNSCVMATVHAGTLNEYSQPLFVVPNKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYE5</accession>
    <name>A0A6S7FYE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023816</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000178">
        <property type="protein sequence ID" value="CAB3979230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYE5"/>
    <dbReference type="OrthoDB" id="5968890at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13975">
        <property type="entry name" value="gag-asp_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21671" checksum="D8B689344EE07329" modified="2020-12-02" version="1">MSAIYCIESEEEEISVVRIQATKEKAVFAKMLVNDVPVYFQVDCGASANILPYKYVEKEKISPCDRTLVMWNGSKVKYLGTCVVRAVNLRNQKKYDVKFLIVDLKDDLTPLLGLKTTEEMRLLTIHKENFISTMFCKKMEVVDKHAEVFNDDLGRLPGIVHLEVGPNHKPVVLPARKIPVAVRDQFKDND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G264</accession>
    <name>A0A6S7G264_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007817</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000488">
        <property type="protein sequence ID" value="CAB3982306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G264"/>
    <dbReference type="OrthoDB" id="10214158at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="367" mass="42493" checksum="56081397FF2D92AE" modified="2020-12-02" version="1">MKTVLFWLFVLVVCTYCHVDFKSIGRHAWRCKAEKLNNRESVNERNEQPTLIDRSSVQETHNTNEAVLRNQGRISNVDGVHCCCGKKCKNFRGLKTHQRSCPFVKGMNDELLFEESEVNNLDDDLSVELDGLILDDTPGLKLDVKLPKNESQWREADLYFRAELPICDVNEKSINECSIKMSNLVYDYFAENFGTVNKKNALDEEFDKKYANYTKQELKRELKALKHQYITAVNNIRYVLKLLRNLASKKGSSSGLNSLNDDEEIKKNFWRYTKMKLDFGKKLLPTFNLSSCTNYFITMWKRLLPTHTFTIPNWIPSLSTPTHKFNSDPPTYARITSIIRRMKANGSACPLDQFSIIPLKKSAYLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G297</accession>
    <name>A0A6S7G297_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon-like family member retr-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075649</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001111">
        <property type="protein sequence ID" value="CAB3987034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G297"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="15452" checksum="78E76A493442DA92" modified="2020-12-02" version="1" fragment="single">MPVSDGKMEEIRYSTKRDEELQQLQRCMKHGWPESLKETPALARCYWYWRNEITEIDRIMFKGAKIIIPKPMRQEMLMRIHTGHMGIQRFLDSATVIQHSKSIFARHGTPEVVISDNGPQDYKDFAAERDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2X7</accession>
    <name>A0A6S7G2X7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000964">
        <property type="protein sequence ID" value="CAB3986105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2X7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18196" checksum="2F79405B8B724C7A" modified="2020-12-02" version="1">MVGPLIDGYLTEIGKGMFAKLGRSRNTGLMPPIKLFVPYSIFRHVCNIVVGYGGSLSINKNRMLVEITNSDNAGKVFSPVRCKGDNLLRKRHFDKVRENGRNIYKYSGRAAVVVTSTTPIIFDYNTKQEKLTILFYVQRYDKDDFSLDATLQALLNSNHVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4P5</accession>
    <name>A0A6S7G4P5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000871">
        <property type="protein sequence ID" value="CAB3985433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4P5"/>
    <dbReference type="OrthoDB" id="5989885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691:SF3">
        <property type="entry name" value="HTH-TYPE TRANSCRIPTIONAL REGULATOR RV0890C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47691">
        <property type="entry name" value="REGULATOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="40693" checksum="A238EFD27A2D952E" modified="2020-12-02" version="1">MTWCQFGAAVSASYVQHVLKRFYIPDEVQVFDKSVPKPCLPPMVPHFIGRQHKVEEISRALTSTSAQVVSVSGPPGFGKTSLAIAVGHHVRQLGLPVYFLSLRSVKTTEELISDLLNTFAHTSSDLTGRERSKLFGLLSAIPSNICVILDNADDLFESSGETSQHVLNLLEKIFSRCKNVSFLLTTRISLQLVLGRKFAGHTSVGVASLERKSSQMLVQELVPAGDESECCRVAEVCGDVPLAMKLLCGQIVDEKKSISQFLDNFSRSSKKLADLLDDPDAPNDQRLKVLFESYFKRLSPEEQEAFVCLSVFVSEVFDEQAAVYVIGGDKDTAKKTLLRLKRKSLVEANERNCSRSTKAVPELLRQIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G577</accession>
    <name>A0A6S7G577_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="16">glutamate carboxypeptidase II</fullName>
            <ecNumber evidence="16">3.4.17.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A036642</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>Release of an unsubstituted, C-terminal glutamyl residue, typically from Ac-Asp-Glu or folylpoly-gamma-glutamates.</text>
            <dbReference type="EC" id="3.4.17.21"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M28 family. M28B subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.17.21" evidence="16"/>
    <dbReference type="EMBL" id="CACRXK020001120">
        <property type="protein sequence ID" value="CAB3987098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G577"/>
    <dbReference type="OrthoDB" id="5841748at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004181">
        <property type="term" value="F:metallocarboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08022">
        <property type="entry name" value="M28_PSMA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.930.40:FF:000001">
        <property type="entry name" value="N-acetylated-alpha-linked acidic dipeptidase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.630.10:FF:000009">
        <property type="entry name" value="N-acetylated-alpha-linked acidic dipeptidase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.930.40">
        <property type="entry name" value="Transferrin receptor-like, dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007484">
        <property type="entry name" value="Peptidase_M28"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039373">
        <property type="entry name" value="Peptidase_M28B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007365">
        <property type="entry name" value="TFR-like_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036757">
        <property type="entry name" value="TFR-like_dimer_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10404:SF78">
        <property type="entry name" value="N-ACETYLATED ALPHA-LINKED ACIDIC DIPEPTIDASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10404">
        <property type="entry name" value="N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04389">
        <property type="entry name" value="Peptidase_M28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04253">
        <property type="entry name" value="TFR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47672">
        <property type="entry name" value="Transferrin receptor-like dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00052003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00066561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB3987098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="430" mass="47793" checksum="D6A95CD5773317B1" modified="2020-12-02" version="1">MPYGDAVEVLKIMEGREVPKSWQGTLNIPYKLGDGGLKNNTVKITVNVPNKRQNVYNVIGTIYGKEEPDRWVLIGNHRDAWGFGAVDPSSGTSAMMEISRGLGELLKQGWRPRRTIKFCSWGAEEAGFIGSTEWVEQNERALSTKAVTYINVDSAVDGNLTLQLSGSPLLKSPITKNVKEVKDPHGGNVYEQMVKAKKEFTYKNLGSGSDYASFYQFVGVPSLDMNYAGKVYYPVYHTVHDTYKWLQGLIDPKFVYHLTTARVASKLLMSTADSFVLPLDVTDYGKSLDSSLETLKNNYGAELLKNNVSLVYIEDAIEKFKDESTKFQAEKGTAIDKKDDIKLRALNDRMVNVKKAFITAAGLPNRPMTRHVIFAPSVNNAYGSTSFPGISDLVVKQNKTDQDWLDIKRQTSIVFKAISDAANTLKADAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7W0</accession>
    <name>A0A6S7G7W0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001482">
        <property type="protein sequence ID" value="CAB3989404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7W0"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180:SF2">
        <property type="entry name" value="BRO FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="13989" checksum="D9357026D3FCF34C" modified="2020-12-02" version="1">MSIQILENPAIIGNKRIKSLVVDDDVWFVAGDVADALGYKDTDKAVRNHVDPESRKAISDISTPAKTAGVQISYGSVKPNTTMIDEAGMYELIMRSKLPAARAFSRWIAKDVLPDLFENVLILFLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8H8</accession>
    <name>A0A6S7G8H8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005651</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001271">
        <property type="protein sequence ID" value="CAB3988045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8H8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="395" mass="45214" checksum="44AD254EC3ED3400" modified="2020-12-02" version="1">MSKQAHITETEPIEQHDSGFMEPMQMFKTFPHNDTFVDNRVFTLNANPAETTSDVYTFVHHKQDYSILNLEDATIQATISLKANNGANLGADQIVTINPLPLHTAWKTKEIFFNNQVVNTISTQENELAYIDHLLREVPSGYLPEKEVNLAIHDTPGHFDSIIHFNDATEDTLVNKGANERYQACNQATALKCYDRIDLMCQSKRFIPTSHKIKIILRRADKTKILFGNAGHCGVANVHFDDFKITIPGARPTRVITYMKLQTRYNGAHNLNPNLIAFPDLQFYGLKINEAFVQPLVQNSREAYHNFRTILNRHYDEMPFSHKDYQSSYGIIVTDLSENKDSFNQVLPNSTSGVISLEMRFNQPLAHQYQLINIAEFRNQLSVGYQNQAHTKYDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8J0</accession>
    <name>A0A6S7G8J0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Chromosome transmission fidelity 8 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A026797</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the CTF8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001301">
        <property type="protein sequence ID" value="CAB3988278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8J0"/>
    <dbReference type="OrthoDB" id="121932at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031390">
        <property type="term" value="C:Ctf18 RFC-like complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007064">
        <property type="term" value="P:mitotic sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018607">
        <property type="entry name" value="Ctf8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28605:SF1">
        <property type="entry name" value="CHROMOSOME TRANSMISSION FIDELITY FACTOR 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28605">
        <property type="entry name" value="CTF8, CHROMOSOME TRANSMISSION FIDELITY FACTOR 8 HOMOLOG (S. CEREVISIAE)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09696">
        <property type="entry name" value="Ctf8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00038447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3988278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12954" checksum="69FD5105A67AD9C8" modified="2020-12-02" version="1">MVQIILNYNPAEKDWMIVELQGILESSQTGGYNGLPIGDLHFDEKGQPLLIIGHHLLSGKVVTLEKPFAVLKKLKIVDEESESTSTEYTVQALVRKKIIFKTRPKPIIVKKNSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEB1</accession>
    <name>A0A6S7GEB1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Triosephosphate isomerase</fullName>
            <ecNumber evidence="8">5.3.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A044014</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>D-glyceraldehyde 3-phosphate = dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18585"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="5.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the triosephosphate isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.1" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020001640">
        <property type="protein sequence ID" value="CAB3990318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEB1"/>
    <dbReference type="OrthoDB" id="6715177at2759"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00189"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004807">
        <property type="term" value="F:triose-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046166">
        <property type="term" value="P:glyceraldehyde-3-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019563">
        <property type="term" value="P:glycerol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00311">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000025">
        <property type="entry name" value="Triosephosphate isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00147_B">
        <property type="entry name" value="TIM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035990">
        <property type="entry name" value="TIM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022896">
        <property type="entry name" value="TrioseP_Isoase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000652">
        <property type="entry name" value="Triosephosphate_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020861">
        <property type="entry name" value="Triosephosphate_isomerase_AS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00419">
        <property type="entry name" value="tim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21139">
        <property type="entry name" value="TRIOSEPHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21139:SF2">
        <property type="entry name" value="TRIOSEPHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00121">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51351">
        <property type="entry name" value="Triosephosphate isomerase (TIM)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00171">
        <property type="entry name" value="TIM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51440">
        <property type="entry name" value="TIM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="6 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 8 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3990318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="26964" checksum="8B2A8C97B2541F2E" modified="2020-12-02" version="1">MASSRRFFVGGNWKMNGDNASIAEIVKFLNEGVNDSTSTEVVVAPPALYLKQVVTDVNKNIAVSAQNCYKATKGAFTGEISPEMIKDVGGKWVILGHSERRHKFGEKDELIGEKVGHALSAGIGVIACVGELLSERENGTTSEVVYRQTKAIAGNVSDWNRVVIAYEPVWAIGTGKTATPDQAQEVHDLIRKWLNDNVSSDVANSIRIIYGGSVNAKNCRELATKPDVDGFLVGGASLKPEFIEIINAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GGY9</accession>
    <name>A0A6S7GGY9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Casein kinase II subunit beta</fullName>
            <shortName evidence="2">CK II beta</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A067790</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the casein kinase 2 subunit beta family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001763">
        <property type="protein sequence ID" value="CAB3990975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GGY9"/>
    <dbReference type="OrthoDB" id="3971593at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005956">
        <property type="term" value="C:protein kinase CK2 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019887">
        <property type="term" value="F:protein kinase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.25.20:FF:000001">
        <property type="entry name" value="Casein kinase II subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1820.10">
        <property type="entry name" value="protein kinase ck2 holoenzyme, chain C, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016149">
        <property type="entry name" value="Casein_kin_II_reg-sub_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035991">
        <property type="entry name" value="Casein_kinase_II_beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000704">
        <property type="entry name" value="Casein_kinase_II_reg-sub"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11740">
        <property type="entry name" value="CASEIN KINASE II SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11740:SF0">
        <property type="entry name" value="CASEIN KINASE II SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01214">
        <property type="entry name" value="CK_II_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00472">
        <property type="entry name" value="CASNKINASEII"/>
    </dbReference>
    <dbReference type="SMART" id="SM01085">
        <property type="entry name" value="CK_II_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57798">
        <property type="entry name" value="Casein kinase II beta subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01101">
        <property type="entry name" value="CK2_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="243"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="17"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="244"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="256"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3990975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="320" mass="36675" checksum="6A3232F83478B454" modified="2020-12-02" version="1">MLRMETANNSNPADLGTAKDAEGETCKDVKKKERNTTTSGWVIRFRKRHGNEWLEEIDRDFLRDYTNLTGLDEEICYLSHGLHIILSDGLYLDSNGNSKIRTKNEGKHLEAAEMLYSLVHARYMLTSKGLEKVFKKYKEGFYGLCPRYYCEKTTVLPIGMSDKLGQGNVKTYCPSCEDIYHTELPGNEPTDGASFGTSLPQMFFMAYPALHPSPTLGHYVPKLFGFKIHGSVEYQHSEITGFKMRQKSQTKHHCSKSGEKDKLKDSCKENDPSQDNTKDKLPDIHGHSLMEKTKDINGHFPEKTPRKRRRRKRTTEIKVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMB6</accession>
    <name>A0A6S7GMB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042738</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002201">
        <property type="protein sequence ID" value="CAB3993168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMB6"/>
    <dbReference type="OrthoDB" id="2717295at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="33250" checksum="74EA32A267C9CEE2" modified="2020-12-02" version="1">MRVRGNSLPWITSKVKELMRERDFHKKKAVKNNSNMHWIKFRAIRNKVNSELKKAKKNYFCNKIKDCVRVKDPKQSWKLINNLLGKNNKSYNISQLKVEDVIISDDIKIAEYFNDFFVNIGAKLANEIEINSTDFTSLQSVPSRPDIQFKSSEISTHEVCLQLRNLKTSKSTGIDTIPARALKIAAEIISPSLTWIFNLSIKTGIYVEEWKKFLANHFWRRWLSEYIAQLIKRSKWDVAHRNLRRGDLVLISEKDGPRSHWRLGRVIAPIASEDRLIRSAVIATIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWB9</accession>
    <name>A0A6S7GWB9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064908</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003155">
        <property type="protein sequence ID" value="CAB3997654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWB9"/>
    <dbReference type="OrthoDB" id="10011386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="538" mass="61874" checksum="77DD004753F15BBF" modified="2020-12-02" version="1">MSKKKRRNGLFDLEEVKKRFDEEKSCADSVKQQVVGLQKFDLVDIFVTKGLSFTEDETLQLLAAKLTFQGVCNLRKTIHQVPSNIRRVISGKPLRATLINHCWVSFSGFAEAYNETYEQQIIQYASRLKSCSTSAEQAEEAPEDCSIVEEELKDRGLREKWIFAPNQSGTNEHMGTYDDVMEYVDRNRCEELYSHKCSSHCKRQGCGRLYVADGNWKLRYAHCMWKVPVSVSGFGKINYPSICPLSPKRGHAFCNEHSEKAQAMGYETGLRDLYKKCGVTGVEVDQDSSFDAVSGCLEGFVDQSNNNNTPNASTFRGTTDFLLNNPAFVEDNSVESDLKCNKDTGGLKTLHFWSRGVFFIVSAGGHIEYWQPLYKSESPTQAFLITVLWLYRKFKALEDAGYCRDEIISEISSTVLSYDNMCHMDGLLIAKKNLPLPYPYDEMWKRVGKVIDRLHLKNHVDPKCKRLYNPDDKLPHEFNTMAREQTFVWASRFKKVMCAMPHIHQFFFLHRIVKYRNKYTEKCHINSKIPILPKLTKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H1M5</accession>
    <name>A0A6S7H1M5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016262</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003270">
        <property type="protein sequence ID" value="CAB3998118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H1M5"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="29657" checksum="24EEB2A0088954A2" modified="2020-12-02" version="1" fragment="single">MDKISAKILQVAAPVIAPSLTEIFNMSIDSDQFPSDWKAARAIPLLKKGQRSMLDNYRPISILPVVSKLMERIMYDQMYEYLNQNNLFSKHQFGFRPYHSTTTTLLDCTNEWYTNMDRGLYNLVVFLDLKKSFDTVDHEILLSKFEMYGFQRKALNLLRCYLTHRTQSCQLASIFSVEKEIICGIPQGSILGPLIFIMYINDLPSCLERTTPRMFADDTNLTAVGRTISEAEERASVDLRNVQKWLCANKLSLNIAKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H246</accession>
    <name>A0A6S7H246_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012352</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002917">
        <property type="protein sequence ID" value="CAB3996656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H246"/>
    <dbReference type="OrthoDB" id="1000085at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF14">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="305" mass="33879" checksum="F2E7E4986174C1CB" modified="2020-12-02" version="1">MIEHTRAESFATALRNAEEAISDALLIAMVLKGLPREFDTFATVVVQKEKQMTFAEFNSALRSHEESAKTHGGKAASAGENIMLTKQKFDGNCFKCGRKGHKSAECLSKASERWCNNCKSKTHETKNCRKKKDAAKTAAEKTTSSENNEHTFAFTSKDTINKSGINNKNNSSLLVDTGATNHIINDKSKFVDFDKEFNPSAHVIELADGSKANVVLGKGNAKVKLYDVNGNAREVMLNSALYVPSYDQNIFSVHAAIERGASISLDKQVKQLKCPVRRDVRSLFRSSCSDQYMYVCLFLRIKYLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4T9</accession>
    <name>A0A6S7H4T9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107339937</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024114</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003895">
        <property type="protein sequence ID" value="CAB4000685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4T9"/>
    <dbReference type="OrthoDB" id="5945546at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.110.10">
        <property type="entry name" value="Cysteine Rich Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22824" checksum="7EFAC7C8648256EF" modified="2020-12-02" version="1">MAKSNLAVSEKDIHLSENTPPPAYDEIFPSSDLPPPYPLPYEKHEIFDKTLLPDSQNIVSSSQVREEIRCSTCFDPIREDTDKKRSGDLVQDGIKSYHYECYIKSRGPKCDHCCFALIPWPNKRLSGRWVTYENKRYHEECYEREAGPRCSLCCNVIVEKPQEGYSGNWRWQNGKRYHDECFMKTIYNEIRAKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H657</accession>
    <name>A0A6S7H657_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ammonium transporter Rh type A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A025098</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003594">
        <property type="protein sequence ID" value="CAB3999466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H657"/>
    <dbReference type="OrthoDB" id="534912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097272">
        <property type="term" value="P:ammonium homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.3430.10:FF:000012">
        <property type="entry name" value="Rh type C glycoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="entry name" value="Ammonium transporter AmtB like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002229">
        <property type="entry name" value="RhesusRHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11730">
        <property type="entry name" value="AMMONIUM TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11730:SF60">
        <property type="entry name" value="RH50, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00342">
        <property type="entry name" value="RHESUSRHD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111352">
        <property type="entry name" value="Ammonium transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Ammonium transporter AmtB-like" evidence="6">
        <location>
            <begin position="15"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3999466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="448" mass="49346" checksum="C297C6D313D2E091" modified="2020-12-02" version="1">MKVSVLSFIFQVLLIILFGVLVKYDPKQAGGFKEGESHDASEEGILRYPVFQDVHVMIFVGFGFLMTFLKKYGFSAVGYNFFLSALAIQWYIIIAGCIEHRGTTGFSINLDISKLITADFSAAAVLITFGVVLGKVSRLQLFIICILEILMFAVNEFVLLEELKIADAGGSLVIHCFGCYFGLAVSFMLRNINNNDNPKEASVYHSDIFAMIGTLFLWMYWPSFNSALVLNPNDQQRTVINTYLSLVACCVTTFALSAFVNGERKLNMVHVQNATLAGGVAIGTVANMIVQPWGALLIGTLAGIISVLGYNYVTPFLNDSLKIHDTCGVNNLHGMPALLAGVAGIICSRLASLDTYHDSLTNVFEAREHRTRAKQSVYQLVAVVVTLAISIASGLITGFIVRQKIFDPPRPDQLYDDESYWEMPDATDESLKEGVNEELMKTMAEDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HA90</accession>
    <name>A0A6S7HA90_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">rhomboid protease</fullName>
            <ecNumber evidence="4">3.4.21.105</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A068860</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Cleaves type-1 transmembrane domains using a catalytic dyad composed of serine and histidine that are contributed by different transmembrane domains.</text>
            <dbReference type="EC" id="3.4.21.105"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase S54 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.105" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020002124">
        <property type="protein sequence ID" value="CAB3992791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HA90"/>
    <dbReference type="OrthoDB" id="418595at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="entry name" value="Rhomboid-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050925">
        <property type="entry name" value="Rhomboid_protease_S54"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43731:SF14">
        <property type="entry name" value="PRESENILIN-ASSOCIATED RHOMBOID-LIKE PROTEIN, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43731">
        <property type="entry name" value="RHOMBOID PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="Rhomboid-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Peptidase S54 rhomboid" evidence="9">
        <location>
            <begin position="63"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3992791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="32065" checksum="6CC2DD6C3B0825A8" modified="2020-12-02" version="1">MEDTKDYTVTMFGISALQMPTLISIAPKESILFNLQALGFPFNMSRPFMKDHVAFSPGNILSGRCYTLFTSVYYHTDLQHLLQNMVVLTAAGQPVHKKVGRRHFLAIFTGGGFFGNLGMWVYYLLQRSIFTKTVAQDLQLLPSSANNIIIKIWSEDTCPKKLIINPDTLNYGISCYGSSAGVNAILSFGACCSAERIVRRLQECHTNQNFELDVYFFSDVMNIVFTLRLFSNDAVALVSSFLTENGFFDQLITQTGNIIGYAGHVAGTLFGLVYYYYMYRRNLLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HAW7</accession>
    <name>A0A6S7HAW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger 287</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004717</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002169">
        <property type="protein sequence ID" value="CAB3993021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HAW7"/>
    <dbReference type="OrthoDB" id="5986916at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012934">
        <property type="entry name" value="Znf_AD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07776">
        <property type="entry name" value="zf-AD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00868">
        <property type="entry name" value="zf-AD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51915">
        <property type="entry name" value="ZAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="31389" checksum="7E69EF5BAA3526D4" modified="2020-12-02" version="1" fragment="single">MASKDTPKKYYKKSVSTDISRCRLCNSVVDRTHNKNIFRSSNLTILRNIEQIYGCALPQENLLPYLICRPCERRLNNAIQFKNTIVETRRSLQNDLRTKRCKELPPSVTKQSTKIHAAGAGPRRRSIDFDLVEVSIPVTEGQVLDEEEPSKHEHDVLQKANKELLEVARRSTPSVLRKRKYEGMSAEGWMTEVLNELSTRCPTVNNILTSLLESDYHSERKNPAICLIYGIIGFLRCHELSRVQRINSVLLTQGQATVNVSTHNLPIKYPGALYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HC48</accession>
    <name>A0A6S7HC48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003864">
        <property type="protein sequence ID" value="CAB4000550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HC48"/>
    <dbReference type="OrthoDB" id="5953554at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15365" checksum="1EBE18B0DF31DC48" modified="2020-12-02" version="1">MSKRRPVWNNYKEKVAKKRMRKGEEKGATGSKGGLTVQRLSANVEGKCQKYSRIGPLTLLPCEKELTLENIKAACKVHFDTELECDVLAGERGPSFTESGQIQNWNVLHVRFVEILEHPTNEKSRKQTARKQSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLI3</accession>
    <name>A0A6S7HLI3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RBR-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="3">2.3.2.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A036833</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-N(6)-ubiquitinyl-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.31"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RBR family. Ariadne subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.31" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020004888">
        <property type="protein sequence ID" value="CAB4004373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLI3"/>
    <dbReference type="OrthoDB" id="10009520at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20343">
        <property type="entry name" value="BRcat_RBR_HHARI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd20356">
        <property type="entry name" value="Rcat_RBR_HHARI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.1750:FF:000002">
        <property type="entry name" value="RBR-type E3 ubiquitin transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000019">
        <property type="entry name" value="RBR-type E3 ubiquitin transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045840">
        <property type="entry name" value="Ariadne"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048962">
        <property type="entry name" value="ARIH1-like_UBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031127">
        <property type="entry name" value="E3_UB_ligase_RBR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002867">
        <property type="entry name" value="IBR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044066">
        <property type="entry name" value="TRIAD_supradom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11685">
        <property type="entry name" value="RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19422">
        <property type="entry name" value="Ariadne"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01485">
        <property type="entry name" value="IBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22191">
        <property type="entry name" value="IBR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21235">
        <property type="entry name" value="UBA_ARI1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00647">
        <property type="entry name" value="IBR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51873">
        <property type="entry name" value="TRIAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4004373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="512" mass="59461" checksum="F349F8E927A843DD" modified="2020-12-02" version="1">MDSDEEDFSYEEEDDEGDDSCDFGVDADEGFDSTYDMPNTASGADDIFTYEVLTPDTIVSYMNTIIDEVDAVFQLTRPVARILLGHFKWDKEKLLERYYCGDQEKLFKDAHLVNPLAQSTLNKVQRLSRSNSGSTSSAFCDICLQVSTNIQTFQGLECHHEFCTRCWKEYLTSKIMDEQKENIACPAVKCDILVNETFVGRILNDQIVKRKYHHLIANSFVVNNRLIKWCPAPDCMNAVKASYSDANAVTCLCRHEFCFGCTEPVHEPVNCSLLKQWIKKCNDDSETANWISANTKECPKCQVTIEKNGGCNHMVCRNNSCKADFCWVCLGPWEPHGSNWYSCNRFDEKDSQNAREAQNKSRSSLERYLFYCNRYMNHIQSAKLECELEAKVVTKMNEMQKHNMSWIEVQFLTKAVKVLSMCRNTLKYTYVFAFYLQKNNQTVIFEDNQKDVEMATETLSEYLERDISSENLGCIKQKVQDKYRYCEMRRKVLLDHVNEGYERDFWEFQDIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HM16</accession>
    <name>A0A6S7HM16_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Mutator-like transposase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005339">
        <property type="protein sequence ID" value="CAB4005876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HM16"/>
    <dbReference type="OrthoDB" id="5981059at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049012">
        <property type="entry name" value="Mutator_transp_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309:SF3">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33309">
        <property type="entry name" value="KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20700">
        <property type="entry name" value="Mutator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mutator-like transposase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="29363" checksum="58151BB1A4548866" modified="2020-12-02" version="1">METAGALTIFERSCATKGLKYKDMLGDGDSSTYSAILESKPYGEDCIPSKLECIGHVQKRVGSRLRRLKSSNKGRKLSDGKGISGKGRLTTGKMDVLQNYYGLAIRENLDNVEEMAKAVKASLFHVASTEENPQHHLCPKGEDSWCGYQRDSKTYKHKNGIPKPIVELVEPIFDDLADPALLKKCTHGLTQNPNECLNGIIWDRCPKTTYVEQETVALATYLAVLKFNDGDISYLKILEDLDITPGFFTCKGAKDCDRARIKLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HV78</accession>
    <name>A0A6S7HV78_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">PACLA_8A075672</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="20">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell projection</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="17">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020006405">
        <property type="protein sequence ID" value="CAB4009296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HV78"/>
    <dbReference type="OrthoDB" id="6108017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042995">
        <property type="term" value="C:cell projection"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016459">
        <property type="term" value="C:myosin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000146">
        <property type="term" value="F:microfilament motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030832">
        <property type="term" value="P:regulation of actin filament length"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.240.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.720">
        <property type="entry name" value="Myosin VI head, motor domain, U50 subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052409">
        <property type="entry name" value="Myosin-III_kinase_activity"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001609">
        <property type="entry name" value="Myosin_head_motor_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46256">
        <property type="entry name" value="AGAP011099-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46256:SF3">
        <property type="entry name" value="MYOSIN MOTOR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00063">
        <property type="entry name" value="Myosin_head"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00193">
        <property type="entry name" value="MYOSINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00015">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00242">
        <property type="entry name" value="MYSc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51456">
        <property type="entry name" value="MYOSIN_MOTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="17" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="10 17" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="12 17" id="KW-0505">Motor protein</keyword>
    <keyword evidence="11 17" id="KW-0518">Myosin</keyword>
    <keyword evidence="8 17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Myosin motor" evidence="19">
        <location>
            <begin position="1"/>
            <end position="637"/>
        </location>
    </feature>
    <feature type="region of interest" description="Actin-binding" evidence="17">
        <location>
            <begin position="514"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="868"/>
            <end position="897"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="944"/>
            <end position="985"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="18">
        <location>
            <begin position="870"/>
            <end position="887"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="18">
        <location>
            <begin position="944"/>
            <end position="979"/>
        </location>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="14"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="CAB4009296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1055" mass="122541" checksum="472CD1827D0E0F39" modified="2020-12-02" version="1">MLINQHQQCCLISGESGAGKTVSSNFLVQQLAELGKSGNRMLENRILQVNPLMEALGNAQTGINDNSSRFGKYLELQFTSNGNIIGARLTEYLLEKSRVVSQSEEERNFHIFYYFLAGLWRDGKLADYSLKVKGKYKYLQSGTKSLEDAVFTTENKQRYDEFKKALNIIGFTAEEMSTLFSIIAAIIHIGDIDFIEDYSDRHMAANSKVSNYQQLQIIASLLRVSAKDLCDALITSSNVTRGETISRKKTVQQSQDCRDAMAKAMYNVLFSWIVDRINQLLASDDGSQSKEFKIGILDIFGFENFHHNSFEQLFINIANEQIQHYFNQYIFTMEMNEYQKEGIPTSKIIINDNKHMVDLFLQRPMGLLALLDEESGFPKASDRTLIDKFNSNIQSDCYTRSRDVNPSFAIKHYAGKVFYDATGFLEKNRDTMSPDIIHVLRTSENMLLRTYFSQGLSSRHDIQGRKPYTSPRGGNFNKCEPRESMIIVSMPAGKSTNSVSRRQQTLSMTFRGSLEDLLFRLNKAEPHFVRCIKPNDKKMADLFDQERVMTQLKYTGVLETTRLRKEGYSERITFQEFVRRYQLVLFHLNENVRPDALSCKAILRAAGLDHWLVGKTKIFLKYYHVEKLGAILEKYRHSVVLVQRAVRAWLQRRRFKHVRDKRNQSAIVLQKVYRGRLVRKKYGYMLNKRERKAIVIQAVVRGWLAMRRYKRLKVKREQCATKLQAVFRGYRVKRFFQKELEMRRRIRREQQEAAAMRITAAARGFQGRKEYGRLLEKSSQLETKMIYFLQQVSHLCDEFYGAQRDLNKPVPKDDRYTENTQGLVSPPRYEQYKAIEKPREKLPERFDKESVVNSKVINGRSEMKALKTNPIAQSNQAKHTSSRTISPKKTYPNPISESGYKINPIILETQREMETENEQKRRGESFIVDTNPLGLNYRGVEKRNEPSMRTREYRSEAEKFFENRNGLEKRPRKQNETRKTSTSSNVLVVRQPPNAGYVRRKQGRDETAQSVKLHEVQDVSDLRARLRRTGQIEEGSGLHKIELARQHSQRIIDVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVW8</accession>
    <name>A0A6S7HVW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071219</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003534">
        <property type="protein sequence ID" value="CAB3999191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVW8"/>
    <dbReference type="OrthoDB" id="5997366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00084">
        <property type="entry name" value="HMG-box_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="999"/>
            <end position="1020"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1085" mass="122740" checksum="A0F7BB2429F7F453" modified="2020-12-02" version="1">MRTIVGFYESFSTADKLNWPCDISYVLCNQRIFFSVEDALDFLAIREHIKLQGWKKIDSFLLEQDIVEPFITDGLKKNLVSYAAFVTMLFGFNGGQKQNQFAEVRTSLKRYLLKMLHGADLKEDGKKPSPKRKTPCSTQTTPHKINVGSKPDKSPICPPGPGVTPLSSKENCSPVQHLLNSPLKVGKCSLELFEKEKSSHAEHKSGRRWKSRPLKNRIRIQENTFTVLSRKIHRGTKEDFLVGLSCSVVPDNEKTFAPETNKWNGKFSVQDVVELTKLVHAHEKEGTVYDLLTEKHAAERYHIDADDILQVEDNSSASDAISYVRRTFPGLISSSYAVEILKNKLKKECELVLQPERCATGWKIQPDRLHTCLQFAYPWLQETKPEWWKIYGDSRTYGRQKSVAVAIGNLNNEHILNGCSFQSPKEMWPICLFYGGDSRLNLELNLGGDSSWLSNWATSMETSGHSMFLSGDSMFLDAVAATDLDPTSKDRFSIYNHETVDTKGKVDATTGLRSGLGRTIERVLPNSVLKGLPAEKYILCSDHMMTRMTESLLTRKVKSIYNMEAKSMINKRERDNLIQRLESNINARGVRGRHFKFHFEAGKNKLEQVSLNKTCAQLISAPPSFFKDASYPHILDGVSQDVLLPKPLPSGLQQALGASSPMITEFDCESLIWEHHFHMHEVNRMEPTPVLIDETKKGSLNAKDYSFGVSDAKIESYIKSPDIFHGLMCFCYGSDALTPYMMKCVDIVPVLLKSLPFRSMMRMATEGGERMHYMHQQRFFQHSSRGGGWKYQDPLLNVFHHMYRQIWERVRDTGEENVDKFQAFVNKCVEGKHSDDSVLGTTPSGDASSVSEFGPLSGKRFSLVGSFASCKLSQEKLKDMITNKGGHVFNICSIPAQLPVDIIVLATQKECDKGSGSPGITTAYQRNWKIVSPQYVVDTKKKVPALENYLLSLEKIQAAPGTSAVHTKVATVAETNFNRCGAFRDLKQTLHCRAEGIERKPKAANPPPMRSHHKKRTEPLKKPPSAFAMFVQEMYAQVSSNHQEMSFKELQSILAEQYRSLPSETKEEYQEKGRRYFCEINKTFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYW7</accession>
    <name>A0A6S7HYW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021233</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006861">
        <property type="protein sequence ID" value="CAB4010656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYW7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22195" checksum="11568FD2E1B98333" modified="2020-12-02" version="1">MGSESDEEISAAVREVEEAAKAPQKKAKSTARKTAEKSQTESKRDKLIELSRDGVIEKSASFIRKSNKDVVDRLYHEYESQRMSCASDFLSTLIISKFASILGSFGAVESSDKLSEELLSDKLLKDDVSYLTRTISPNIPFIGLISGGCTTAKHVVAHKWNKKEEPKEISEEAKHILLNTEEECQNTNGKTLGKEQSLKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IFF9</accession>
    <name>A0A6S7IFF9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004967">
        <property type="protein sequence ID" value="CAB4004672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IFF9"/>
    <dbReference type="OrthoDB" id="5982167at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19703" checksum="FC51647521C8821D" modified="2020-12-02" version="1" fragment="single">PTHTSGHILDLIITQNSHDTLLPTRPLTDHLFSDHITVICDLTLGRIPPTEKQISYRKIKAIDKAGLQEELLSSDFCLNRPDTLNELVKCYNDTFKLAQTLNRYAPLCTKLVKSGPLVPWFNDDNKIARREKRKAERKWRRTGHTEDMRNYKITKNNTNKLMNEARCTTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J2Q6</accession>
    <name>A0A6S7J2Q6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine- kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065394</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014079">
        <property type="protein sequence ID" value="CAB4026215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J2Q6"/>
    <dbReference type="OrthoDB" id="6163056at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12121" checksum="1EE3EC740C528FBF" modified="2020-12-02" version="1" fragment="single">MAPELLMNSPAVTEASLADFMMADIWAFGMVVFNLINPGLQHPYELNMKNHVRTPLILFQEFARKNERPVMQSKYESLQSGEWAGLKNTFELCTTFEPLSRPSIKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8B0</accession>
    <name>A0A6S7J8B0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015412">
        <property type="protein sequence ID" value="CAB4028335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8B0"/>
    <dbReference type="OrthoDB" id="10461112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16541" checksum="5EA6F74EF4874296" modified="2020-12-02" version="1" fragment="single">LEDYNTSDEIATSPQETDTSAEYENVTSDGKPAPGFSRGVVRFRRDYMNTGPARNSWYDRLQLIRPFAMEWLRNAWGNVDEFGRQVYDVMQRARHVFVPYNKLSNLQQGDSAGSGVGKDDSTYSSMERPSAAILPTESENASTTENV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JER0</accession>
    <name>A0A6S7JER0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine threonine- kinase endoribonuclease IRE1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A064557</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015802">
        <property type="protein sequence ID" value="CAB4028891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JER0"/>
    <dbReference type="OrthoDB" id="5975584at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990604">
        <property type="term" value="C:IRE1-TRAF2-ASK1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070059">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036498">
        <property type="term" value="P:IRE1-mediated unfolded protein response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045133">
        <property type="entry name" value="IRE1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954:SF28">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954">
        <property type="entry name" value="IRE1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000654">
        <property type="entry name" value="Integrin-linked_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="520" mass="59006" checksum="7BDE579D97FDCDBB" modified="2020-12-02" version="1">MSELLNAAETRNFREVRRLVESGADVNQKNSYHTTALHCVAQSGSLETVKYLAEHGADINCKNWRNETALHYCVRSASLDIVKYLVEKGADVNSISESNRTCLHFAVECGSLELVKYLVEHGANVTREDCRAWHTVLHYACKLGNVLIVDYLLEHGAKEDVNKQEWASPLSAACPGGHTAVVQALLKYNVDLRKEKLLICGNSEIMNILNLELKKSIKHREKIEILRTMNEEMLAKDGPPLKYFSALKTLLLGKGSMGTTVYVGIMEDGSEVAVKRMLIQACEDSARNEIEILNRTDTNKSPFIVSYRHFYDDDTFMYLILDLCEETLKEYVNSQTTEHLRKHGPRMIKEILTGLQFLHRLGILHRDLKPTNVLVDVEGHMRLADFGVSRVLNEDETTVYTDAKGTRDWMPVEVIEAIDKRQKCRFKKKSDVQAVGMMGFFILTKGEHPFGPSSVDCMTNILQGNPVNLSKLQNLGAREFVAWLISHSISERPYAHEALSHSFMNQVEEFEVFPKLMKRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLT4</accession>
    <name>A0A6S7JLT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071619</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016541">
        <property type="protein sequence ID" value="CAB4029990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLT4"/>
    <dbReference type="OrthoDB" id="5969706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="41264" checksum="C2F10A863C3145E6" modified="2020-12-02" version="1">MAVRYGVLLEENRGPSACPIILHNLLHFKDDIKNFSGLDNYSCWTKERAVKRYTRNPSNCKNIECTFAASESRRESLKVIKERESQTPNEDSVNEDLLWAKSIDQARKLYKASQVVQEKSSIGILVGGPHRFVLSYQIQHEIAVMSDVRNNDVIDGATSYRSIWKPNHGFNGLLYRVREEAIVVASQGGEVSVQIQKIFTVLVAGQSKHFLYCSVFKEVVGNNDSGRLVQTSENTIVVPAENISRKIMVAKADPTNGQPTFLIVDYMRRIFPVRPGTVVVPYFPCINDMILVRGDNEDTVWRARVLSFRMRRQDVSGCFFRQRPDRLWEPEGTRNQQIMFVSILGIVKGTWVVQFSRWQDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQ24</accession>
    <name>A0A6S7JQ24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MCG19209, isoform CRA_a</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087929</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019373">
        <property type="protein sequence ID" value="CAB4033577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQ24"/>
    <dbReference type="OrthoDB" id="18853at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd21214">
        <property type="entry name" value="CH_ACTN_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.418.10:FF:000005">
        <property type="entry name" value="Actinin alpha 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001589">
        <property type="entry name" value="Actinin_actin-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11915">
        <property type="entry name" value="SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00033">
        <property type="entry name" value="CH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00019">
        <property type="entry name" value="ACTININ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00020">
        <property type="entry name" value="ACTININ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="30193" checksum="E0D81AD51242AD5B" modified="2020-12-02" version="1">MADEEQEYYGYYYGDDEDRGLLDTAWENQQKKTFTAWCNSHLRKVGVQIETIDEDFRDGLKLMILLEVISGERLPKPERGKMRVHKISNVLKALEFVVTKGVKLVSIGAEEIVDGNMKMTLGMIWTIILRFAIQDIAVEELSSKDGLLLWCQKKTAPYKNVNVQNFHRSFKDGLAFCALIHRHRPELLNYAELRQVGYYFGNSIAREQYIALYGRVIPKSGSVERKLIKYDHITVEHVLSFSVEPFKRFVQVDLESCGMKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRT6</accession>
    <name>A0A6S7JRT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073327</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018720">
        <property type="protein sequence ID" value="CAB4032814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRT6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="34843" checksum="1F94FF305796721F" modified="2020-12-02" version="1">MKLIVNKFGTKINGATFKDVKIIISKNGKMIYSADKNKESVVNENKELIRKAKIEHSKTPAALVEEQLEQQNLDAPQELVDNVLENIVERMDDELSSQSEANGNSTVIMENELRELRDILNVKGNSDKQKIEYLEVEKNHWKELAETERTAGREQKALLYEAMADMAELKADEIRLRSNERPKGPKAMSIVEEEVEINDLTRFERFKKWAKENIFGISAVAISVAGIITTIIMGVRSVAKKGSRATSKFEKAMANLAGKIGPVLASVLNLVAKVLSWGEKGIAFLAKNLWILALALTYFLHNEYKRRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JSJ4</accession>
    <name>A0A6S7JSJ4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073525</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021241">
        <property type="protein sequence ID" value="CAB4035645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JSJ4"/>
    <dbReference type="OrthoDB" id="5989324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11287" checksum="AA1B43AC744BCD0A" modified="2020-12-02" version="1" fragment="single">GSILGPLFFLLYINDLPACLSKTKPRLFADDTNITAAGECLSDLEDAVNSDLEMLRKWLMANKLSLNVAKTEFQIIGTKQMLKKASVQQLKIHIQNIPIKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTE8</accession>
    <name>A0A6S7JTE8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">5-hydroxytryptamine receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A041331</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010460">
        <property type="protein sequence ID" value="CAB4019441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTE8"/>
    <dbReference type="OrthoDB" id="5959645at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24248">
        <property type="entry name" value="ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4019441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="297" mass="34490" checksum="61B55E01877ED5D5" modified="2020-12-02" version="1" fragment="single">MAVDYSEVLDFLEKLNKSEIVIQILIIIFAILGNTMVLVATWRERSLHEPNKYFVACLAVADLLVGMIFAPLRLYQLVNIENGGTTSIYFCRFYFWIDNFLQTASIYILTFISFDRYLKISKPLQYKSRMTTSTLLKIIFIIWLITATVATLAMFPYADSPSIYAGAQCIFMNRIFHTIGAVSAFFLPTTIMLVMYTLIFLVVHKRQKMLRNGALGETSNNPNQRSALLRNLKVIRMLLVVVGVFIVCWGPFFVWLMIFYYQKKETFWLSLTYCYEHSCNNMVYFAMVLWQLVTILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZ95</accession>
    <name>A0A6S7JZ95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A038057</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022856">
        <property type="protein sequence ID" value="CAB4037227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZ95"/>
    <dbReference type="OrthoDB" id="5945834at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF53">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4037227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28300" checksum="6318A1B3546CB737" modified="2020-12-02" version="1">MISNIVFLISLFLFGMEVESQTVAKQLEITPRSCLDYLKRGFKSDGYYTIYDFKTDDRITVYCDMTSEAGSAWTLVMSYALKSRHMDQIARKSMPQDTPVNEHSPNWNLYRMGLSQMTHLKSQSTHWRTTCTFSTYKVDYTDYVRAKFADFDIMTFLGSGICKKVEYVNIRGHQCAQCTSRWWQQNSRYAPHIDSRSNGCQFVPTQGSVTTENNFGYYTEAYNKKFRCSAGPLSTTNWWFGGYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K095</accession>
    <name>A0A6S7K095_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A039720</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021495">
        <property type="protein sequence ID" value="CAB4035914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K095"/>
    <dbReference type="OrthoDB" id="6270329at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018957">
        <property type="entry name" value="Znf_C3HC4_RING-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00097">
        <property type="entry name" value="zf-C3HC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00504">
        <property type="entry name" value="Ubox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4035914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="27365" checksum="DB606DF3AEBB409F" modified="2020-12-02" version="1">MACGGYSEDRFQTSVDKNFFCPICTDVLKDPVQCYNQHLFCRACITEHLKNSQTCPVCMEKLTEEALSKPPRIVTNILDGLMINCEHKERGCVELVELGLLETHISVCEYKPVTCPNERCEAVVNMVTGGTTSSIEYVRIHDKAISGRAQQRINRANQYEFIYSLVRQLPFECYGHKTTILNDHLWLVGGYNLNNQGQSSNTIYMTPIRSTGTFVVKRRMPKPLSFHGLEIVTPVLMAMKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0Z6</accession>
    <name>A0A6S7K0Z6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027652</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022670">
        <property type="protein sequence ID" value="CAB4037041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0Z6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="74" mass="8555" checksum="AAD2259CCF54FF63" modified="2020-12-02" version="1" fragment="single">KNKVRLLSNISFLRNCKSLKIIPNGLRATNVLKNTVNSSSARKLADKYSRQWLQLMIESQYHRLAKIRLNKGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K3G3</accession>
    <name>A0A6S7K3G3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TLDc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077202</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008888">
        <property type="protein sequence ID" value="CAB4015898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K3G3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23354">
        <property type="entry name" value="NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TLDc" evidence="1">
        <location>
            <begin position="218"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33364" checksum="72B268A658E075FD" modified="2020-12-02" version="1" fragment="single">SQKQVAMFHLFSYPHINSHDELFPTIKPMSSTSKTFVLASPSRCRPKIGCVQNFFMSLEDGVNDTKPSLETDFLWVYAPGTHPEIIATLVADGGHINEGRTPAALNSGPEEVLVVPNKETLKRIPPAQGLLAFSQKNQQLLVKGEQGWSKIAMEKKAQSEHKLILRELNAKQKASANQLSGKQQVLEQNQQNMEKQIKSKLKNLEKQIQALNKQLTKKFMDSQILRGKANFIRQLSQWVPIATSWSLCYRATRNGWSSYTFHSKCDYKGATVTIIRVGSYIFGGFSDASWGASSGYRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K831</accession>
    <name>A0A6S7K831_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071175</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028582">
        <property type="protein sequence ID" value="CAB4041605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K831"/>
    <dbReference type="OrthoDB" id="5953486at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10754" checksum="6E625AEA1DCC7651" modified="2020-12-02" version="1" fragment="single">MSGVQEGLVVNDLVILSPQYLVDIMTSIHDVPKDRNFQRQFSDEFRKLETKGRIDSHVLEYVWKNKEVNAEILVELLSCFNILYPLSNEKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KAE4</accession>
    <name>A0A6S7KAE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A069321</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025964">
        <property type="protein sequence ID" value="CAB4039854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KAE4"/>
    <dbReference type="OrthoDB" id="5976092at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052129">
        <property type="entry name" value="Spermadhesin-Link_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46908:SF8">
        <property type="entry name" value="C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46908">
        <property type="entry name" value="CUBILIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="12834" checksum="8897B4503E0F3CC2" modified="2020-12-02" version="1" fragment="single">MTGPSGSFRSHKAAVSEMDPRSQYCSWLITLSEIYNVSLSFKDLTIPSCNDTFLRIYDGSNDAAPLLGTYCGSNASTEVVILSSTNNLYIVSNSGNYARSPKNTFIFHAQYNAENLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBS4</accession>
    <name>A0A6S7KBS4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026623">
        <property type="protein sequence ID" value="CAB4040314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBS4"/>
    <dbReference type="OrthoDB" id="1922121at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19239">
        <property type="entry name" value="GIY_YIG_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21920" checksum="7BF20313141DFB97" modified="2020-12-02" version="1">MVYIFDDLRPCALLSFISLFLVMAFQYPQYREKVGQLCPIPGARGNWSGWQKVMVQEQNLNGDYRNRNANHVGSYRSGRNFPGRRVCGIYEWKVKREEDEIVVYVGSSCNDGNSPLKDRILQYCRNGSHKSDLINDTLSKGYDLYVRWREFSGVGESMEAENFLLQRYNYAWNLRDNGIRAPLVGALHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBT8</accession>
    <name>A0A6S7KBT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025365">
        <property type="protein sequence ID" value="CAB4039420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBT8"/>
    <dbReference type="OrthoDB" id="5988397at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="13256" checksum="E9C4FB754F75825E" modified="2020-12-02" version="1" fragment="single">VRNADEDIQERIKKKRNSEKGFFTLSFTEERLQSPTALNEKGNINGPERTARRKIQETSEVAMKVHGETSSNMQPAYFGLFATLSNGAAASTLTDMFYKSPTVMTKVIPNVVNERSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KD51</accession>
    <name>A0A6S7KD51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A065056</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014034">
        <property type="protein sequence ID" value="CAB4026143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KD51"/>
    <dbReference type="OrthoDB" id="5989402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF46">
        <property type="entry name" value="INTELECTIN-1A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043803513" evidence="6">
        <location>
            <begin position="23"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="135"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="151"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4026143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="26130" checksum="7849F8C905007578" modified="2020-12-02" version="1" fragment="single">MRVLLNLCALIFVLQKEKPSECSIKQAIFHRKVQNYFANHVIGTSQAESELECCINCVGDGSCASVNYKAAGIGKGLCELNNKTLQETSDADGSMHNPEFNHLYIIKKQPEDPVPKNTPPQNTMSVTTTIDFSTTQATTKSTPKETEGSIFPTTQPTPNSTPKETESSIIPTIQPTTVLPSLSSCKELLERDGSLISGNYTLQNNVTLEQYEVYCHMDEISKCETGAWTLVMKVDGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLT1</accession>
    <name>A0A6S7KLT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033468">
        <property type="protein sequence ID" value="CAB4043894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLT1"/>
    <dbReference type="OrthoDB" id="10239443at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18574" checksum="63EA8FB34105C177" modified="2020-12-02" version="1" fragment="single">MIREKLKIDEGPKNNLDILEKDYVYDVYCAEDNYGALSEVEFWHLKREFSDLKREFSDLKREFPDLKKEVWRLKREFSDLKREFSDLKKEGVLAFEKGVLAFEKGVLAFEKGVLAFEKGALAFEKGVLAFEKGGLAFEKGVLAFENGVLAFENQVLAFEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQ93</accession>
    <name>A0A6S7KQ93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034688">
        <property type="protein sequence ID" value="CAB4044360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQ93"/>
    <dbReference type="OrthoDB" id="5987630at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="535"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="535" mass="60469" checksum="11A4F73EC49BF799" modified="2020-12-02" version="1" fragment="single">IEKPTRVTKSSKTLIDHLITNFPQRIADTGIIPCSIVSDHDGIYASINVRVPRFEARHKYIRDIKSLNESLFIEDFSTLPLSVIAYSDDPDEQLESLNSLFFECLERHAPLRRVRVTRPPAPWMKSANIQTLQKERDHLRHKAHQSDADNGVWTAFRLVRNNLKSAIRSAWKAFIEKAQLSSNKSRDIWRVIHRILKPNPKPLRVDPDELNTHFSTTAERTLEASVVSLSDLTSLTDNLPAQSSNGDQFNLKPVTQEDVFKCIRALRSDCSTGVDNIPARFVKLVAEHLACLVTSITNKCISNAYFPKLWKIARVSPIPKVENPTSNDQLRPISILPVLLKVFEKLVAGQMSEFAERAALLPDRISGFRKGHSTTSVLLGIRDDIRHAMKKGEITLMVLADFSKAFDTICFKSTIEKFYKLGFSKTFLKWWLSYLSGRSQFVQIDDKSSSRKPIHFGIPQGSILGPLIFNLYVADLNDVISSHTNCYQYADDTTLYNHCKVADLTTGETSMNKTLTKLSNWSQGSNLALNPTKTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KQV5</accession>
    <name>A0A6S7KQV5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Collagen alpha-2(I) chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A054560</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016064">
        <property type="protein sequence ID" value="CAB4029282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KQV5"/>
    <dbReference type="OrthoDB" id="10422444at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005581">
        <property type="term" value="C:collagen trimer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005201">
        <property type="term" value="F:extracellular matrix structural constituent"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000885">
        <property type="entry name" value="Fib_collagen_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF46">
        <property type="entry name" value="INTELECTIN-1A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01410">
        <property type="entry name" value="COLFI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="6 8" id="KW-0176">Collagen</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0430">Lectin</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4029282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="683" mass="77028" checksum="7711DEA77F9CF01D" modified="2020-12-02" version="1">MALSMFMRFGKLRTVNVVFLLISVQWLMFTETKMTTCKKEFKGVRKFYRKVSGDDGVVICVKNNGKYVWIFRDGSPTLGERFNPAKDCLDIVENVHVAKDGFYWIQLGKNMLLKGWCDTHTDGGGFLLIGMNNNPITWNVPSNNTPVDPMGPPHWSSEFGDVNIQDFAIQISTTDSFKDTKAHWFYRLKPKRNLGNLFGVGSGGCTDVHSGIGNVSYVKDILTETVFRMGLPHKMDSFGSFSYSVGSELSGITDDATAFLGCDNDECCACFGPKDGRNHYCSKKCRAINGGTVLKNQVYVWFWIRTRTPERLWKRCMEFKMKTETGKFETYHIDRNTGTPRKGSCSKQFQTFLNEGTLLVKNKESFNNLPPVPGILSYREDNEKLYVNKGNEWDEIGSEKEIENLTAQVKQLQDNLQDKVYQQVAQIQNLVMHINEQMQNLSKENSHQDVQIQNLERKINAKLQNLTTSASVYGSKSNPGKSCKDILPRNKFAVSGIYWIKPAVNKLFQVYCDMETHGGGWTLVYSYTFTNYNSFTSPSNAVTPRPNWPASDANVPISTTPPLSESSLGAVDWNLWKTIGKEFMIKSNINDWIVCQPNGGSLVTKIEGSMSCQNIKNVATACGGVAPYRVFWYNIGPTLHASSYYYYFDGHTGNSWPTHDPCGKDETDYKKGVSNPGGQIYLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KV08</accession>
    <name>A0A6S7KV08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Meiosis 1 arrest</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037579">
        <property type="protein sequence ID" value="CAB4045091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KV08"/>
    <dbReference type="OrthoDB" id="6433824at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051308">
        <property type="term" value="P:male meiosis chromosome separation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007127">
        <property type="term" value="P:meiosis I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007283">
        <property type="term" value="P:spermatogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033587">
        <property type="entry name" value="M1AP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28642">
        <property type="entry name" value="MEIOSIS 1 ARREST PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28642:SF1">
        <property type="entry name" value="MEIOSIS 1 ARREST PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11662" checksum="1A473CA9D1CB482D" modified="2020-12-02" version="1" fragment="single">MFVRPTCCWKLDWDELESNQQDFNSLCKVLNEKDLSLILKSEVDDASASTHPQACYLIMASSNSTLLIKPVVMQELMLPSNFPSLSEKTSQQSTEIIEDCLDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KZR1</accession>
    <name>A0A6S7KZR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024827</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017910">
        <property type="protein sequence ID" value="CAB4031812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KZR1"/>
    <dbReference type="OrthoDB" id="5988214at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="28435" checksum="8C75EC5FD11DC055" modified="2020-12-02" version="1">MDSCSLDWFAVTSIFESLLERIKVDFPNVKIVCVRSDEAGCYHTTDLLAAIHDVSDRSGIAVERYDFSEPQQGKDVCDRVLCPTKTSIRRYCAEGNDIFNASDMRKALEERPVKGTTAAVCTLDESSENLKVLKIKIFSDLHKFQYEKEGLRTWRAYDVGPGKLIQWKFVYVKHQGTTNISLDEGHSFFKFSETRQLSLKNDQETPENTIDNDNQPPLFVCPEEGCSYNSDSFPELELHMALALNPSKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L077</accession>
    <name>A0A6S7L077_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013853">
        <property type="protein sequence ID" value="CAB4025849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L077"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="21546" checksum="A5801FBCEBE48DD6" modified="2020-12-02" version="1">MSDMNNIDLAYLELEEEKDQNSLVQKNKKHKKQEQPALILSLTDIHSRMVEYENGFLQESQLKKDKVEKEKATAEEMRKKACEKLGETKKREEQEDTSGPGRKRKSTEFLEYLKYKQDTNKENTEKQLKIREQEIILEKQRLDVQQNMQNKMVEQMKMQPESQKAMFNLFETFMNKFKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS24</accession>
    <name>A0A6S7LS24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019659</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026872">
        <property type="protein sequence ID" value="CAB4040499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS24"/>
    <dbReference type="OrthoDB" id="10056483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19122" checksum="35AFD164F5DE7142" modified="2020-12-02" version="1" fragment="single">MVTVLGETSNPLTVLSGVPQGSILGPLLFLVYVNDLLDCVSSSSSLAMFADDSKCYHSIKCYEDAEVLQSDINAIDSWFKEWQMSLNHSKCGLLRITRNSQPIHYSYNVEGNLFKTINKQTDLGVIVSKDLKWSLNVQAVSNKANKMLGFVKRLCFHVSDPKVRKTLYLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS60</accession>
    <name>A0A6S7LS60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC110058109</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057488</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030591">
        <property type="protein sequence ID" value="CAB4042672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS60"/>
    <dbReference type="OrthoDB" id="5949087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="218"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="395" mass="45437" checksum="7444150B0984C11B" modified="2020-12-02" version="1">MAEQTLEHETDETDNTSRVDVFNSIDQLLQRINEKQDDGNIAFHEASLILNKLETALSIVVRLTSLDIDLTENTRLVLLQFSDCLTEIYNYWAIRSRIANIRRATVTLPTLGIENVSMSGDQGRPSLSIPKEILEDLRNSGYSWTEISKILQVSRWTVHRSVREYNLQHLDRFSDISDDELDQLIMGYISRHGIIPLVNHTSLASLDLKVFVFSETGRIIYLLCADNNRSDTVVNVFAAATDEFGYPSRVRGDHGGENVQVARLMERERGEGRGSFIAGPSTRNQRIERLWREVFRCCLYLFYCIFYALEESGVLDLNNNIDLFVLHYVYLPRIDHALQEFAAALNNRPMRTGNNWSPEKNWTNGMINEAVRQLSAWDDIENIELYGVEVRVRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6D8</accession>
    <name>A0A7D9D6D8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031462</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000052">
        <property type="protein sequence ID" value="CAB3977514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6D8"/>
    <dbReference type="OrthoDB" id="6021508at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13385">
        <property type="entry name" value="Laminin_G_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="36105" checksum="6B7DB07E2635C26E" modified="2020-12-02" version="1">MLENILIEMATQAKGSVRRVRKLKLVLVYLFICVNQSQGFTSIYESADHYWPMKNISDNTSLDTVDYMHGDIMNGAQLNNTKLFGPAVILDGEDDWIRLALLNDDCTNMPSECRNGFTISFWLYYIGGEFILCAGVYNVGDKGPGIKFTVSNKLFVIEISTLKYTWKITSKLVARTWVHVAFKWSAIEGIHLYLDGNAVQQKDFPRKEVTFARPEYGRGWSLGRPNSILKLTKYGNFGIAHLAQWQRELTAVEIKTAFYETILSDQKKLIELLTTPEQPTISQEELKGSKRTTSSAAHTFNHVKSWSVVASLILLSLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGM5</accession>
    <name>A0A7D9DGM5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060342</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000823">
        <property type="protein sequence ID" value="CAB3985063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGM5"/>
    <dbReference type="OrthoDB" id="10318356at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="18013" checksum="F3061D559FA57FD6" modified="2020-12-02" version="1">MTQAEENFILDEFQGYPMFREDEIRGRRTMGNIMRTMGSDDNDDSDVGRFDSYWDSSARKKSETYFTNEQVDKVLEEAFRDEPFAEESTGTVRNNVGESLIAKHAHDGSIPLSIIENERNGNPYQRDIVENELVESPFSDMDTGMKIGRKFRHKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DHD3</accession>
    <name>A0A7D9DHD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000891">
        <property type="protein sequence ID" value="CAB3985613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DHD3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="22885" checksum="B759F46E77C84A8B" modified="2020-12-02" version="1">MAENSNILEELQCSLHDISLEELIVLNTVLPYFNIGIEDDDSEDDLGCYPIQSTSTPEKDDFRPGKHQLTPNSKLVNQPLSKRFQQCDPTSSDEISIFLVKTTRETASDKLVPSLQLVPDSSTVPRYLLVREDMPVRGLDVGSYNAGDWGRVRVCSKIGSGAEVSDPRQQFPQSPHKARCFPKLEDWCQDNSDIETDMNFNYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DN26</accession>
    <name>A0A7D9DN26_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Piwi 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001456">
        <property type="protein sequence ID" value="CAB3989275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DN26"/>
    <dbReference type="OrthoDB" id="445936at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04658">
        <property type="entry name" value="Piwi_piwi-like_Euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000014">
        <property type="entry name" value="Piwi-like RNA-mediated gene silencing 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003165">
        <property type="entry name" value="Piwi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02171">
        <property type="entry name" value="Piwi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00950">
        <property type="entry name" value="Piwi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50822">
        <property type="entry name" value="PIWI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="411" mass="46883" checksum="36CF570B28995CB3" modified="2020-12-02" version="1">MDGRVLPPEVIKHKDGKTYNYKPAEAEWSREMRGADLRSTVPLDSWMLLSTSRDSGIAQDFLQTLQRVCGPMGIKVAKPMMCELRDDKTETYLRTMQEKMTDSVRMVTCILPTNRKDRYDAIKKFCCVSRPVSSQVIVARTLSKKQMLMSVCTKIGIQLNCKLGGEVWAVDIPLKNLMVIGIDCYHDSVSKGKSISGFVASTNQTLTKYYSRCTSQHTGQELVDGIKVCVTGALRKYNEINKTLPDRIIVFRDGVGDGQLAAVFEHEVKQFMECFRTVGFQERPKFAFIVVKKRINSRFFLKNGRLQNPPPGSVVDQHVTRKEWYDFFLVSQSVRQGTVTPTHYNVIHDTTGLKPDHMQRLTYKLTHLYYNWPGTIRVPAPCQYAHKLAYLVGTSIHDEPDISLADRLYYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E485</accession>
    <name>A0A7D9E485_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Prefoldin subunit 4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A052944</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterohexamer of two PFD-alpha type and four PFD-beta type subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the prefoldin subunit beta family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003314">
        <property type="protein sequence ID" value="CAB3998273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E485"/>
    <dbReference type="OrthoDB" id="10250441at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016272">
        <property type="term" value="C:prefoldin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd23165">
        <property type="entry name" value="Prefoldin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.370:FF:000005">
        <property type="entry name" value="Prefoldin subunit 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002777">
        <property type="entry name" value="PFD_beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016661">
        <property type="entry name" value="PFDN4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009053">
        <property type="entry name" value="Prefoldin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21100">
        <property type="entry name" value="PREFOLDIN SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21100:SF9">
        <property type="entry name" value="PREFOLDIN SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01920">
        <property type="entry name" value="Prefoldin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016477">
        <property type="entry name" value="Prefoldin_subunit_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46579">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR016477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3998273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15248" checksum="6413FB7219812944" modified="2020-12-02" version="1">MAVVKNLGKGKEEIEITLEDQKQINTFARRNARMEELKEEIETKKKDLQNLEDASDELLMVEDSLISYKVGEVFLQMNQEEIEEHLETAKTKIKDEIQSCEEQLTEIQGVLAALKAKLYGKFGDSINLEADEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJ95</accession>
    <name>A0A7D9EJ95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060888</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006159">
        <property type="protein sequence ID" value="CAB4008563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJ95"/>
    <dbReference type="OrthoDB" id="6157020at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="18472" checksum="9CF87364623B36DF" modified="2020-12-02" version="1" fragment="single">LKRMKFSEPPSFKKKGHEVQYKHNERTNPNYEGLDEDGDPNQGHILRNNKTALENESFVTEAITDLLACQSIAMVDLPPLVVNPLSVATNARGFHTSTLEVLSERCPKKAQKFIYASDQGYGGYAISNHQTLVCQGHWLESERGTSSTWRELKALGASTGSFNSGGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJN8</accession>
    <name>A0A7D9EJN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082374</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006262">
        <property type="protein sequence ID" value="CAB4008889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJN8"/>
    <dbReference type="OrthoDB" id="5976378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20201" checksum="9353802A5B5A64C8" modified="2020-12-02" version="1">MKPSSASNELQNLTQIVEMLIARALPIMRVYIKSGGQRGYSGHCIKLPQNVTELATSLPRYAKDLAVIIFKVKGKDNMFREVTVRKQKVHNALVWLISNNPHYSKLTINEEALNLLPENGVPPDLMTVETDDDIVFDDNCSPDAGPPTDNPSEDIVYNVSTEISSFTCWRTTTTTTTTTTGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EL59</accession>
    <name>A0A7D9EL59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006976">
        <property type="protein sequence ID" value="CAB4010965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EL59"/>
    <dbReference type="OrthoDB" id="5997366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="158"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="186"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="535" mass="60927" checksum="01D5E18888740677" modified="2020-12-02" version="1">MTMNKHGIYITGSSPASARLVFLLNFLVCLFFNLNQSEIKRAGKTSSWKWPVDLDYYESSDGRIFFSNEQAIPMLGLNQEISRRGYTRVDKFLAGQGISHSFVCDGVKRRMIGYETFMCLVMGFCGHKVKVDESTEEVVLKLRQCSLSRMHLVKQKKLLQKTDSPPRHYTSRIVQTTPKKVSTNATQTSQCQGQGSSQTEKGTSQSTSVLIDKENMRQLEQKNDGNGGRIFKSRPIAKRCKSQEAVHKEIAESIHHGSKEDFLLGFARTASHKAENVSTDWDGKLSAHDVIEIAKNAYCPTTKKTAYDIMTCDHSVQRFHLDKTYLLNVQDNMNSTEFACDLRRKIPGLLDSAYSVDQLKKTLKKEFSVVLQPQRTATGWRIEPDRLHQCLKYVYRWIPEQEYWRVYGNARTYGKQKSVLLAIGNLNDEQLLNNVQIQSPKELWPLSIFYFQDSRLNLELNLAGEESVGYSSGWLNQWIGQMKDKSHKMYLTGDSMFLDAIADPKLDPKSESGISIYNYETTATKGDVCENTGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELH4</accession>
    <name>A0A7D9ELH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A087253</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007470">
        <property type="protein sequence ID" value="CAB4012333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELH4"/>
    <dbReference type="OrthoDB" id="9975959at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016605">
        <property type="term" value="C:PML body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070260">
        <property type="term" value="F:5'-tyrosyl-DNA phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006302">
        <property type="term" value="P:double-strand break repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd09080">
        <property type="entry name" value="TDP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051547">
        <property type="entry name" value="TDP2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15822">
        <property type="entry name" value="TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15822:SF4">
        <property type="entry name" value="TYROSYL-DNA PHOSPHODIESTERASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4012333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="29113" checksum="E81AC9A13A5A5A96" modified="2020-12-02" version="1">MAILTCPCLWIVLGDASYHKEWVYGPEMINGSQFFSKFMRHGQIFSTVVVAEYIVLSGHQPHHNFSYFNAILIRSSTVNTENSKLEYLPFENSVQGRHFLTFPIRFAGSDIILMTSHLESCKPLSKERKSQFREILLYMRRRRNGVNVIFGGDTNLRDREVEAVGGLPNEVLDAWASCGSPHDSEFTWDMSENDNKDMNGAKPKLRFDRIFLRPAQKGKVVRPRIFTLIGKQRLSGGRFASDHWGIWLEFSFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EML9</accession>
    <name>A0A7D9EML9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016719</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008151">
        <property type="protein sequence ID" value="CAB4014098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EML9"/>
    <dbReference type="OrthoDB" id="430293at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035437">
        <property type="entry name" value="SNase_OB-fold_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50199">
        <property type="entry name" value="Staphylococcal nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20599" checksum="61A7075D0ADE1F56" modified="2020-12-02" version="1">MNPAYYHANLKKKDNSVPRFTLKTVKRYAKVVSVYDGDTCDLVFYINTQNMNQDKPVRYKCRMLGYDAPELEEKPSGELARGYLTHLCTGGDAHTHNAVENLRTEKRVQQKLDDNKNSLVYAEFGGPGKYGRQLVTLYQISKEEEDDSTSCDMVASESSEDNVPPIPTSINTMMAQYINTLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPE1</accession>
    <name>A0A7D9EPE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018673</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007593">
        <property type="protein sequence ID" value="CAB4012666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPE1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="166"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="20924" checksum="27F99D639AA2FE91" modified="2020-12-02" version="1" fragment="single">MDITSSPYWPRGNGKAESAGFQRCLGLNKDVSKLVQSEISLKREKAKKFYDRKAGKEHLNVPIESYVYSKPCPRNRSSPWQYGQVVRKPTSRSYVISTSNGTVRRNRAQIRQASLPSPQVKMNDDIKLKMQIPEDPGNLQLSDSQSTAPEVQGQSQVLTPSSKEFNSSGDDSNEGSSLVYKIKLKNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPK4</accession>
    <name>A0A7D9EPK4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Ribosomal RNA-processing protein 8</fullName>
            <ecNumber evidence="13">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A051966</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Probable methyltransferase required to silence rDNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Nucleus</location>
            <location evidence="1 13">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the methyltransferase superfamily. RRP8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="13"/>
    <dbReference type="EMBL" id="CACRXK020008259">
        <property type="protein sequence ID" value="CAB4014332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPK4"/>
    <dbReference type="OrthoDB" id="10258825at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005677">
        <property type="term" value="C:chromatin silencing complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033553">
        <property type="term" value="C:rDNA heterochromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042149">
        <property type="term" value="P:cellular response to glucose starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000183">
        <property type="term" value="P:rDNA heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046015">
        <property type="term" value="P:regulation of transcription by glucose"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.2150:FF:000001">
        <property type="entry name" value="Ribosomal RNA-processing protein 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.150:FF:000068">
        <property type="entry name" value="Ribosomal RNA-processing protein 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2150">
        <property type="entry name" value="Ribosomal RNA-processing protein 8, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007823">
        <property type="entry name" value="RRP8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042036">
        <property type="entry name" value="RRP8_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12787">
        <property type="entry name" value="RIBOSOMAL RNA-PROCESSING PROTEIN 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12787:SF0">
        <property type="entry name" value="RIBOSOMAL RNA-PROCESSING PROTEIN 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05148">
        <property type="entry name" value="Methyltransf_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="6 13" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="12 13" id="KW-0539">Nucleus</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0678">Repressor</keyword>
    <keyword evidence="5 13" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="8 13" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="11" id="KW-0804">Transcription</keyword>
    <keyword evidence="10" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="7 13" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="76"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="14">
        <location>
            <begin position="87"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU365074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4014332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="367" mass="41969" checksum="3AFC42DFFDB8636D" modified="2020-12-02" version="1">MEKEKRKRKRRKPKKKASKSLFVEAVGFESKNIKSSNDKACSTVLLSLYKNGNIKKGETSANKDIKDLKLIKNRIKKRKKRMRTEKSSNPAVKSSDFNDNGTTCLDKHSTDQSMASNVIINTPSDVTFKRGPVSFRQTNKMSNTRTEKLSLKEKLQNKLESGRFRWINEKLYTTNSLSAFEMFKSEPKLFDVYHQGFSSQVQKWPVNPVDTMIDWIMQRSSQLVIADMGCGEAKISQSVPNKVFSFDLVAVNDFVTACDMAKVPLSAESVDIVIYCLSLMGINLNDFLQEAHRILKSDGILKIAEVVSRFECLSSFEKTVSCFGFKLLTKDTTNKMFVQFEFKKLFKKSDQMKTLPLSLKPCLYKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EQ02</accession>
    <name>A0A7D9EQ02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A068777</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007979">
        <property type="protein sequence ID" value="CAB4013678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EQ02"/>
    <dbReference type="OrthoDB" id="75250at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031410">
        <property type="term" value="C:cytoplasmic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032483">
        <property type="term" value="P:regulation of Rab protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051696">
        <property type="entry name" value="DENN_Domain_GEFs"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12296">
        <property type="entry name" value="DENN DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12296:SF30">
        <property type="entry name" value="DENN DOMAIN-CONTAINING PROTEIN CRAG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="194"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="241"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="195"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="269"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="35443" checksum="EB07A84CE9FD33FE" modified="2020-12-02" version="1">MLKMKERKRLMEVKTYLFGGDPDRSGSAFSPGVSISHDSGIDDLDGFGIPGTAGSRISSASQTDINGSFKDPVERTRSDASESDSSQFRMFVTSGDTDSDLGSEGYQNTTSGIDYVDWRSHCGMVPRDVSFEALICSCNQCKQCERYIYDEEIMAGWSPDDSNLNTSCPYCSTNQAVSLTIKIKDYRNCFSREGSNFSSTPSSYNSNEYLPTDNSIPPSPNPPVAIPSNMTRKIIQRAVHGDDSPGLARSFSPPGISIPRGRKNRNEYPSSAPCSASNSPGNGLFMGQASPKTHNRLTISRSNSIPGIGSQSSLYVGTYFYGLGDGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESD4</accession>
    <name>A0A7D9ESD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008887">
        <property type="protein sequence ID" value="CAB4015896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESD4"/>
    <dbReference type="OrthoDB" id="10666714at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="72"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13965" checksum="40644EC1B355284B" modified="2020-12-02" version="1" fragment="single">MQCMLQDKSCRSANFRKTSGEQENCELLRTVYSEEQPVNLKKNENFDYYILLQPDRKPEDAVSLSTPRQITKKVSTTTTTQTNGSTTQSQTKTKSTLEKTDGPTNTTTTNKPRKRDGYTTQTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWN4</accession>
    <name>A0A7D9EWN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A011683</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Spindle</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010121">
        <property type="protein sequence ID" value="CAB4018681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWN4"/>
    <dbReference type="OrthoDB" id="5978115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005819">
        <property type="term" value="C:spindle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057508">
        <property type="entry name" value="SHCBP-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045140">
        <property type="entry name" value="SHCBP1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14695:SF4">
        <property type="entry name" value="PROTEIN NESSUN DORMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14695">
        <property type="entry name" value="SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23762">
        <property type="entry name" value="SHCBP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SHC SH2" evidence="5">
        <location>
            <begin position="17"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="domain" description="Right handed beta helix" evidence="4">
        <location>
            <begin position="353"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4018681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="505" mass="57612" checksum="6E8BCCB34E2ED32B" modified="2020-12-02" version="1">MEIMPMIFQTSTLTYEERFPVYCNEILGKCKASEVKANFAEYVEKIVQKRGWKAIWSCTDVDIKLKENLNILVEIVNVFPKKLSSEVNICVPVMSNPSITFQEAQALIRERDNCISLTELSPVFDESGDFDQTALALEHVRFFFENLWRDWDLDVEDDYCYVTRNLENRLRLYYDITQNNLSKEFTKKYNATLNEYKQKVFHLKELRKNMSASDSEQELDTSDVFMLAQKTHELEDIVRSLQTMEDPQMRYLLASVNSRKPAEMGEVRTYPVTLIVAEKLRAKMTKSLADETIIEHFKSLEKAVECSNMDDSMVIYPGSYNVGALVFKHPLSVTGNGNVIVECDEDDDSFLTTHSQSIKLNNIKFIHTSSNSPILVVEKGQTVLRNCEFRCTTDGIFVRQGAELIMENCKMYGSTNVGVIIEENSVVQIQRCEIYNDDINRNTVGIKIFSSTAHPANVVITESRITASQGINVIDGQNEETVQQSIDNGVQLKLENNIIVCEALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F1A2</accession>
    <name>A0A7D9F1A2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sporulation kinase mde3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010890">
        <property type="protein sequence ID" value="CAB4020301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F1A2"/>
    <dbReference type="OrthoDB" id="5989125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="39648" checksum="BD3B8EBA8D97098C" modified="2020-12-02" version="1" fragment="single">MSLPSESRCSRAYIPSDFRDLRANWLSNVFVEDKSCRVKCSEVIAELTNAFEGISKRECSFVIRKRFPNVKRIHSSHVYYYTGIRRLIVSRLTTAENSTLQLVDAQDQVDKQISACSSPDLIQEIPRSMYINRMELMADIQKSTYKFPNGNFGHLELQHYRGFPVGVRQYETNVINEARIVLSLPSHPVFPVLIGVCCDMKPYLLVTMVYGNVHNGVYMSVCGLIVHCRQHNDIDILQRVSILLEIAEGLSLMHSCGIVHGNLTVENIILRKEKGRSHTFSPVFLNLEKAKALERSCHDIEYQQDFEMFSFIIDKIIDVYNLKDVSNLAGLNTLQLVKKVPVNGSLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD33</accession>
    <name>A0A7D9HD33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000199">
        <property type="protein sequence ID" value="CAB3979450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD33"/>
    <dbReference type="OrthoDB" id="6158912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="19235" checksum="1D4330F60CE6B43E" modified="2020-12-02" version="1">MLGTPYSYRLRRVKRHVTLLSVHRFVHGLLLLQRSSLPLLLILLANDVELNPGPVISSEHLEHGSSVVNNRSNTIATERKTFRCLSWNTRSLFSLHRTTDGEMISNNSSLQDFVYSEQIDIVFLTETWLSDKHFDAEILRQDYNVFRVDRKCKTGGGVLIATKESSFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HL25</accession>
    <name>A0A7D9HL25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000701">
        <property type="protein sequence ID" value="CAB3984128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HL25"/>
    <dbReference type="OrthoDB" id="10065482at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13360" checksum="2AB92EFCDBF000F5" modified="2020-12-02" version="1">MRTWLNQPLPSTHLPPHIWATVDKAMLSCTTIQATFVIARNEDGIPFPIPTDAPKQMHQATNIRGKVLEMLGIGEDDAHLALPVTWDAVHALNLGVTDVKDSKEASGIHFLKIYQMMQCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMD6</accession>
    <name>A0A7D9HMD6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CTHRC1 C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009046</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000959">
        <property type="protein sequence ID" value="CAB3986066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HMD6"/>
    <dbReference type="OrthoDB" id="5985978at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057873">
        <property type="entry name" value="CTHRC1_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25815">
        <property type="entry name" value="CTHRC1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTHRC1 C-terminal" evidence="1">
        <location>
            <begin position="71"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="16244" checksum="F3E37BF0D5D92B37" modified="2020-12-02" version="1">MKQSIISIGLILFSIAVLYAKATSTCSCSCGGHDESRPRQAPLVKQCTFKNLDDGQDKGQIQDMLSTLVSITINGKECSSPAPIDAVIYANGVSNLNHHRPGTLDGFCNNIPKGKVTVGLSVGKCTSYDGGDAYTCWNSVCRLIIEEIPSMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQE2</accession>
    <name>A0A7D9HQE2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pyridoxal kinase</fullName>
            <ecNumber evidence="5">2.7.1.35</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Pyridoxine kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A004820</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>pyridoxal + ATP = pyridoxal 5'-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10224"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17310"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="2.7.1.35"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="13">
            <dbReference type="Rhea" id="RHEA:10225"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>pyridoxamine + ATP = pyridoxamine 5'-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:25104"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57761"/>
            <dbReference type="ChEBI" id="CHEBI:58451"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.35"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="12">
            <dbReference type="Rhea" id="RHEA:25105"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>pyridoxine + ATP = pyridoxine 5'-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:25108"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16709"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58589"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.35"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="14">
            <dbReference type="Rhea" id="RHEA:25109"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxal: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxamine 5'-phosphate from pyridoxamine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxine 5'-phosphate from pyridoxine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the pyridoxine kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.35" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020001292">
        <property type="protein sequence ID" value="CAB3988204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQE2"/>
    <dbReference type="OrthoDB" id="2104723at2759"/>
    <dbReference type="UniPathway" id="UPA01068">
        <property type="reaction ID" value="UER00298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008478">
        <property type="term" value="F:pyridoxal kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009443">
        <property type="term" value="P:pyridoxal 5'-phosphate salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01173">
        <property type="entry name" value="pyridoxal_pyridoxamine_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004625">
        <property type="entry name" value="PyrdxlKinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00687">
        <property type="entry name" value="pyridox_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10534">
        <property type="entry name" value="PYRIDOXAL KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10534:SF2">
        <property type="entry name" value="PYRIDOXAL KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyridoxamine kinase/Phosphomethylpyrimidine kinase" evidence="15">
        <location>
            <begin position="81"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00047310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00047377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00048524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3988204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="36435" checksum="007F58CF975B62D8" modified="2020-12-02" version="1">MSDFRVLSIQSHVVHGYVGNKSATFPLQVHGFEVDAINSVQFSNHTGYGHWKGQVLNSNELTDLYEGLKLNQINNYTHLLTGYVGSESFLEEVVNVLSDLKKVNPNLVFVCDPVMGDNGKFYVPESLLPVYRDKLLPLAYIITPNQFEAELLSGMKINSEQNAFEAMDILHNKGTKCVVITSSELGKDNTLVALGSFCNFGLSGNNHKLCIRMEIPKLPAVFTGTGDLFASLLLVWMQKHPNDLKLACEKTMSAVQAVLKRTLQEAQELAGPDNKPNSAQIELRLIKSMNDLLNPQEIMKSGSEWVLIVVLNEIKICSNVKFRHAWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQJ8</accession>
    <name>A0A7D9HQJ8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cytochrome c oxidase assembly protein COX20, mitochondrial</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A062955</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the COX20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001179">
        <property type="protein sequence ID" value="CAB3987465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQJ8"/>
    <dbReference type="OrthoDB" id="14603at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033617">
        <property type="term" value="P:mitochondrial respiratory chain complex IV assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022533">
        <property type="entry name" value="Cox20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31586:SF1">
        <property type="entry name" value="CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX20, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31586">
        <property type="entry name" value="CYTOCHROME C OXIDASE PROTEIN 20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12597">
        <property type="entry name" value="Cox20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02049">
        <property type="entry name" value="PROTEINF36A"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="5" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3987465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11914" checksum="421D47BEDD8E3B4D" modified="2020-12-02" version="1">MADRERKSTKWSWDIQKIPCARESLILGISSGLLVGAAVFLKTKVVRKACDYAVGTFAVLSLTSWEICSYQHYRERQKVKEAVGMLNEYERKRSQGLVDGEPTET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HSD9</accession>
    <name>A0A7D9HSD9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001482">
        <property type="protein sequence ID" value="CAB3989403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HSD9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13128" checksum="51EF150D29CEE55A" modified="2020-12-02" version="1" fragment="single">TKPSEPPQKDKDPRRVAAGKRLAAISQQAKANKKAKREEELKNQVSVESEECEDEGLFSLKKLDLISTIVVGFGTLYFMWQSQKKDEEEEKSPVKKEEVPTKENSTRVPFDDLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HVP7</accession>
    <name>A0A7D9HVP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A065372</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002357">
        <property type="protein sequence ID" value="CAB3993931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HVP7"/>
    <dbReference type="OrthoDB" id="6116165at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251:SF37">
        <property type="entry name" value="CUB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251">
        <property type="entry name" value="OVOCHYMASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="disulfide bond" evidence="3">
        <location>
            <begin position="48"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3993931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="36457" checksum="8D0E3C33C6C10F75" modified="2020-12-02" version="1">MGAISFLEYIIYDTEDAQPSWDEFSGHHVFTDKVQSLPKVFYCYYEGCEYKLRNNSGSFTSPNFLNSSYPDFQHCSWSIKVNVASRISLKFQTLHVSNCEENSLDIYDGDSAEESALLARFCGANATSGVKVMSKTNYLLITFKSGDNSDENTEDLTKRLRFHAEYEGFQTATPRILSTAEFFTTKKETRPTASAGISNNTYLNTVPTSTFTTRIKAPGGAKELLTKNNAYFSTVTSSTAIFTTTRRGTPKATTKISKDNTYENGIIDSHSAHNQSSSIYLLIVLPVIAILILLLVVGIIFYWRRNKKKDAATINDRSKRIVKTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWT5</accession>
    <name>A0A7D9HWT5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Centromere N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A029541</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
            <location evidence="2">Centromere</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CENP-N/CHL4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002328">
        <property type="protein sequence ID" value="CAB3993780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWT5"/>
    <dbReference type="OrthoDB" id="6585699at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000775">
        <property type="term" value="C:chromosome, centromeric region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034080">
        <property type="term" value="P:CENP-A containing chromatin assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052011">
        <property type="entry name" value="CENP-NAC/CAD_complex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007902">
        <property type="entry name" value="Chl4/mis15/CENP-N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46790">
        <property type="entry name" value="CENTROMERE PROTEIN N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46790:SF1">
        <property type="entry name" value="CENTROMERE PROTEIN N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05238">
        <property type="entry name" value="CENP-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0137">Centromere</keyword>
    <keyword evidence="4" id="KW-0158">Chromosome</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3993780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="348" mass="40234" checksum="8E49730599ECE377" modified="2020-12-02" version="1">MEYTTVRSFFMRFNKDKLFKICVDNKLAGELKKSSYTKDYLSRLLVEHALSGKFSLRKLEILDLLHYHSSTNKKWNVYELQGKGKGKDKQFVLNDPEEFEELMDKELKSYLNCKVCVLAENNMLLARISVWNENPNLLLSTTSIYMIHIPGSSHVLLSTVKAAYKTYFYKALENLFGCENLKEIDLTGKKVGPLCDLVLNKSSQGSFSHFRLNQVDENPLSRKRKRDSGEDSDIENNPKTFNEEWKKDQKIKTQTLKTFGSNPQPSLEKIEFKMSTRFKAGEYVPELADSEETVNCFVRFKGTNVLEGIQKLCEHGLASQPLPSHMRNIHSLSRNYFILTDKKRPKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZB0</accession>
    <name>A0A7D9HZB0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="18">SNF-related serine/threonine-protein kinase</fullName>
            <ecNumber evidence="4">2.7.11.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="19">SNF1-related kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">PACLA_8A079877</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="22" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="22">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="17">May play a role in hematopoietic cell proliferation or differentiation. Potential mediator of neuronal apoptosis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020002328">
        <property type="protein sequence ID" value="CAB3993782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZB0"/>
    <dbReference type="OrthoDB" id="942095at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14074">
        <property type="entry name" value="STKc_SNRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd14339">
        <property type="entry name" value="UBA_SNRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000003">
        <property type="entry name" value="Non-specific serine/threonine protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000166">
        <property type="entry name" value="SNF-related serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346">
        <property type="entry name" value="MAP/MICROTUBULE AFFINITY-REGULATING KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346:SF45">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 22" id="KW-0418">Kinase</keyword>
    <keyword evidence="13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0488">Methylation</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="21">
        <location>
            <begin position="19"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="20">
        <location>
            <begin position="350"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="20">
        <location>
            <begin position="476"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="20">
        <location>
            <begin position="379"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="20">
        <location>
            <begin position="510"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="20">
        <location>
            <begin position="541"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="20">
        <location>
            <begin position="582"/>
            <end position="591"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00054738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00074971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00077142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="CAB3993782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="946" mass="105761" checksum="204F56883D3765F7" modified="2020-12-02" version="1">MAKFTRQARRNESKIAGMYDLEERLGSGHFAEVKLARHVFTGERVAVKVIDKLKLDETAKHHLYQEVRCMKLVQHPNIVRLYEVIDTKTKLYLVQELGDGGDMYDYIMKHESGLSEDKARRYFRQILQAIDYCHRLYVVHRDLKPENVIFFKKHDVAKLTDFGFSNKFLPGTKLQTACGSLAYSAPEILLGDSYDAPAVDVWSLGVILYMMVVGKAPFYEVNESETLTMILDCKFHIPDHVSPACQSLISRMIVRDACQRAVLEDILGDPWVQGDYGPVAVTSIPLANQVKIGVDQHNEIVEKMQLGDIADLETITKCLESGSYNHVSATYYLLAEQILRRLRWHRSISSSSISSSGPDTEVKSHVVKRQSMPPKKTKSSLSDGDQTLSVPSVEELPLSDGNEPEDDIGMNLMTSKLRYHSNESIYDDIKKSDKQHDQEEIVGAVSVAVTSNQRKTFQKRRVAKVKSTPAFLNQISEERESDLDDSPRASPRVRRSSRRPLNVILKTRRPSGASSTGGRRSSSHSSSSEDDGDLDKKMRRLSTERCRRSPKRRSDDEGDGDDGDGGTRGPHGVARKKMMSEKPQQSGCNKETSSESGSSSNEQGKTAQLGLHSELLKDKLLNVYIKLNEDQNTSSAENENTVMETASCCQTDLSDNLLDLSHNGEPLLCSENLSNQQNLRPHFSIGGKCLSNMETSVESVASSENILECSKDIESNSKNVAKPDECINSDTKSQDNVKSENMLVDSENLSMLSKDCTSNFKSRTNDFENIATTSQKKVTFLGKDLADNSNENSEEVHTARKKNVWNEKYMVGDVSKDKGDTVLKCEASQSETNLVCDGAKKEENSDNVMTRNDDVDDHIMEIFKERSLTIETLESISDKENVDITAEETKSYANGDTTRLRGSDIEEIEMYMKTKGTGLELDAVAVRTIFNNPKVSRVTSNCCQII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3M2</accession>
    <name>A0A7D9I3M2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002722">
        <property type="protein sequence ID" value="CAB3995743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3M2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="289"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="292"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="371" mass="41891" checksum="6599516F435F74BB" modified="2020-12-02" version="1">MDQNSKRRSTYQQRFLSFQFNIGETITRSKYYGSGRCTQYVSLDTEAQTSEDKQEQVAGTQLESTASKPQRIIQQTNVESDKNNISDQRWRKQSKDGVETVKFSCIVSSSAALRAQARAEVAAAIKKVEMQKRRSSVEFQSILLIHQQEVALARKKTEEQDRMENFRLEEEAAIAIARAEVIDHELGPGIRCDELQEIELPERGTNNQQVPLLNPHVPPAHQQVPLVNPHVPPAHQQVPLVNSHVPPVPQQVPLVNPHVPPAHQQEPLVNPPVPQQVPLANSHIHQFLNGAPSQQPCTTSSSTDTSTQSPSTTSSWSTPILNLQHPKVSQHHVLETLTLQQRNFILRTEVNPQYRFYEVICRFYGQKGVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7A9</accession>
    <name>A0A7D9I7A9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A055517</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003462">
        <property type="protein sequence ID" value="CAB3998890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7A9"/>
    <dbReference type="OrthoDB" id="5980980at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001965">
        <property type="term" value="F:G-protein alpha-subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005092">
        <property type="term" value="F:GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000132">
        <property type="term" value="P:establishment of mitotic spindle orientation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052386">
        <property type="entry name" value="GPSM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45954:SF1">
        <property type="entry name" value="LD33695P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="13"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="25"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="20"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3998890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1174" mass="134980" checksum="36AF76AA731A547B" modified="2020-12-02" version="1">MGQSNSKHRKKNKTPIQYHAKALEIVQERGDKEHETAAYNGLADAYRFNKQFEKAIGCYQKALEIAQERGDKKREKAAYIGFGHAYKNKSLFDAAIHYYKKALEVTQELGNKEEETVAYNRLAEAYNGLGHACILSNQLQKAIQCYRKALKIAQQGGVKQQETIACNRLGHAYKLDNQIQPAIHYYQKARKIAQEWGDKEQETVGCNWLGDAYRLNSQLQMAIQLCKEFEKAIECYRKALEIALKRGDKKQQKVAYSGFGHVYKYNNLFEEAIHYYKKALEITEELGDKKEGTVAYNGLGEAYRLNSQPQMAIHCYQKAFEIAQECGDKRQETVACNGLGYAYLYNNEFETAIQYYQKAMEIAHKRGDNQLETCNGLGHTYMYNNMFPTAVIYYQRALAMAIEYGHKQQESFAYNGLGHACRLNNQLQKAIQYYHKALEIAQQGGVKQQETVAYSVLGHAYKLNNQFQMAIQSYQKALEIAQESGDKQQETIAYNRLGHAYKLDNQIQSATDYYHKAVETAQECGVKEQETVAYNGLGDAYRLNCQPKMAIRHNHAALEITQVLGSKKQKTVAYNGLGHSYMYDNMFQMAIQNYKKAVEIAKQEGDREQETVAYYALGDIYRLNNQFQTAIRYFEKALEIAHEDEDKEQETVAYNRLGYAHRLNNRLKTAICYYQKALEIAQERGDTQHETVAYNGLGYAYLYNNEFETAIQYYQKALEIAHDCGDNLQETVAYNGLGHAYLLNNKFQTAIQCYQKALKFALEGGDIQQETVAYIGLGHGYRLNDQLQMAIQNYEKAVEIAQQGGDREQETVAYYALGDIYTLNNQFQTAIRYIEKALEIAHEDICLQSKALEIAQERGDTQHETVACNGLGYAYLYNNEFERAIQYYQKAVEVAHEHEDNLQETVAYNGLGHAYMLNIKFQTAIQYYQKALEFAPEGGDKQQETKAVEIAQQGGDEQQETVSYNALRDAYRLNDRFQTATRYHQNTVNIAYERGEEQRATFAHNGLGHAYRLSNKFETAIHHYQIASEIAQQRGDKEQETVAYNGLGHAYRLSNQLETAIQYYRKVLEIVQERGVALEYADRLKTQFTMGIVYHDIEYFEKAVKFESEGVEKLREIQIFIELGKSYRLNKQFEMSFNQYKKAMEIAKEQQSQEEEVIALNGMEETVKGELMFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9W8</accession>
    <name>A0A7D9I9W8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004737">
        <property type="protein sequence ID" value="CAB4003838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9W8"/>
    <dbReference type="OrthoDB" id="8038274at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955:SF77">
        <property type="entry name" value="ASPARTIC PUTATIVE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955">
        <property type="entry name" value="RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="32892" checksum="CCF1306DB2033976" modified="2020-12-02" version="1">MKWLPSILETNVWRSNYVNFGTSKQSGFPHQKRAYKINSKMMLTSQMANYEVKLPGKPSHDTPPDNYQLCRQCLGFLFDDIIKLVSELPSSKQSILKIIANMFNLLGVLTPVFTEMKVLFQELCESKLGWDEPLSELLYHKWQRCCNELNKTSIPRLELLSALILARLMAKVTSALQSVIGIDIIKCRTDSITALFWIQGKEKEWKTFVENRINEIRSLVPVECWFHTPGRDNPADIPSWGAKASQLQTSDTWFHGPSWLVCDEGEWPASKPLSQPSDKCNQELKLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDU6</accession>
    <name>A0A7D9IDU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dehydrogenase reductase SDR family member 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075579</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005976">
        <property type="protein sequence ID" value="CAB4007971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDU6"/>
    <dbReference type="OrthoDB" id="47007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053011">
        <property type="entry name" value="SDR_family_member_7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44269">
        <property type="entry name" value="DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="27989" checksum="54B1BB008570A190" modified="2020-12-02" version="1">MSFVLIAAIFIIVFLISIYKTVEVDITLKYYELFGKKVDELRDKVVWITGASSGIGENLAYELASVGCKLILSARRKQELERVKTKCSEIAGKKLNDEDKDFLVLPLDVTKFDTHDQAVQTVLEHFGQIDILVNNSGRSQRGIIINTEFKVDQELFELNVLGTISLTKVVLPHMIERNAGHIVVVSSLTGKLGVPTSGTYSATKHALQGYFYSLRTEVYDNGIDVSIVCPGPVKSAIVENSVSEKFGKACRTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRB5</accession>
    <name>A0A7D9IRB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007166">
        <property type="protein sequence ID" value="CAB4011488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRB5"/>
    <dbReference type="OrthoDB" id="6782434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15931" checksum="1E05510BE800D645" modified="2020-12-02" version="1" fragment="single">ANKVCEIYFSDDGNIKEEDKMFVGITTQGKMMKMLNDGDLDPQQVQRFYDAVGAFYRAAAQYAVAKLPFHDKVLENSRFVNFEKRREHEFTMVEFFLQRFPDHLEMSVEEQEKLQEQFIDYQLLSNDNIPPTCLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IVK2</accession>
    <name>A0A7D9IVK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Vacuolar sorting-associated 13C-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A037646</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the VPS13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009855">
        <property type="protein sequence ID" value="CAB4018105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IVK2"/>
    <dbReference type="OrthoDB" id="428159at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045053">
        <property type="term" value="P:protein retention in Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026847">
        <property type="entry name" value="VPS13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026854">
        <property type="entry name" value="VPS13_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166:SF93">
        <property type="entry name" value="INTERMEMBRANE LIPID TRANSFER PROTEIN VPS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12624">
        <property type="entry name" value="VPS13_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Chorein N-terminal" evidence="3">
        <location>
            <begin position="15"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4018105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="30843" checksum="B82E8844FA9A3534" modified="2020-12-02" version="1">MDSTDFSENMFHFMQVFIKNIHIRYEDKVTTPGTSFAVGITLKHFTAETTDEFWKPCVVDATEKNIFKLVSLDSLAVYWNTDISSRQYGGSKDWQSLLRSDIKTKETKNDDYEYASQTAQHKAMKTSGLQPYQGEPIADPAWIAQYNEERRAEEERRQLLMSRLNGTVPVSNWCTCELCKVDLLVNERGSMLPRNRRLLRSVRDRTCFTRSRYFLSVAYREYIQLVYGYLGKRRIPLPACGYHAIRQAFGRKDFKGFEDDEELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IVY5</accession>
    <name>A0A7D9IVY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008320">
        <property type="protein sequence ID" value="CAB4014481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IVY5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="52" mass="5822" checksum="01A7ABEA134C85AD" modified="2020-12-02" version="1" fragment="single">TMISSFRSCLQVCQLLQPGSQKLLLLPPNDSPNPEENAAQTLSILDRLLWLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J5B7</accession>
    <name>A0A7D9J5B7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052928</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011845">
        <property type="protein sequence ID" value="CAB4022179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J5B7"/>
    <dbReference type="OrthoDB" id="1217891at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20874" checksum="5C34777BFDA33195" modified="2020-12-02" version="1">MFNEYFVSIFSSDSDVAFEHGDRLHNVEFENITLSEEEVLAVIMNLDHNKAHGPDNIPARLLKETAAQIAPSLCSLFNKSLRIGVVPDDWKLANVVPVYKHGEKAEVENYRPISLLSLISKTLERCVFNNIKHHAYDQINPCQNGFVPKKSCITQLIEVLDHIGRDLDRGKQIDVIYLDFVKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J928</accession>
    <name>A0A7D9J928_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NFX1-type zinc finger-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056352</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013155">
        <property type="protein sequence ID" value="CAB4024653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J928"/>
    <dbReference type="OrthoDB" id="425894at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990404">
        <property type="term" value="F:NAD+-protein mono-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051712">
        <property type="entry name" value="ARTD-AVP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012317">
        <property type="entry name" value="Poly(ADP-ribose)pol_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45740">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45740:SF2">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00644">
        <property type="entry name" value="PARP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51059">
        <property type="entry name" value="PARP_CATALYTIC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="420" mass="47540" checksum="97033382BEB8F7F7" modified="2020-12-02" version="1">MVIFHEEANKKAKDLEHKISKKVPIISIDEIFPTGSTAAEYRVAEDQVLKFIQPMHNWFPKVTKIEKVTNLVLEKKFEEAKSRAFGDFIAPKFHGTSDDGVKGITEDGFRMPDPDPPPAKRGMYGQGIYFATDSSKSAREIYTKGSQKLLLCQVLLGKSKEVRHADNSLNKDKLRLKRYDSVHAPRGSAVKNDEFVIFDPDQALPQYIIHFSSTNHIAPPSPTWLTHKKIFKKTMTASRTVDFQDPYEIYYNFAESHFRRMAANSNPPLSPQQATIKSIDIVINQNLSIQFEKTKQEFKRKRIPDDEILAYHGTDKKNINSILETNLQLSYAQRQLYGKGNYFSEFPAISLGYGDGLLLCRILPGTEKVDNSIRDIPQGYNSKKVLLGKQPGTAAANAASGEMIIIENSDQILPFFVIHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPN0</accession>
    <name>A0A7D9JPN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003297</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018979">
        <property type="protein sequence ID" value="CAB4033137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPN0"/>
    <dbReference type="OrthoDB" id="5989324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20054" checksum="B07B2B8ABD051B6A" modified="2020-12-02" version="1" fragment="single">MNLDRESQIVIIGDSIIKHIIPKKISSRNVTKITFPGKTADEISNQLDQIKLKSTPSHIIIHAGTNNLPVDTAETCAENVGQLASKLKTKFPTSRIGISSIVTREDCDLTDKIRKTNSLIAQTCLNQDYGFINNENIDRTALNGSKIHLNAKGSAYLAVNFIKFIREAIKRPPKQEQGKET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JWT4</accession>
    <name>A0A7D9JWT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059328</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022978">
        <property type="protein sequence ID" value="CAB4037350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JWT4"/>
    <dbReference type="OrthoDB" id="10619290at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13063" checksum="8F8D2DA1C6AFC700" modified="2020-12-02" version="1">MESTSTSTSAKVQVQPSITGCVNKYTEEAYRKLMKCAYEMAMEPTMAHRHFGVLVKCVKANGVRLIERKEDGRSGREFVHCIAEAVREKSALILGSVDFFSILSDGSQARKPRKNSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAA7</accession>
    <name>A0A7D9KAA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box At1g78280-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035589</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031637">
        <property type="protein sequence ID" value="CAB4043148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAA7"/>
    <dbReference type="OrthoDB" id="203487at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000987">
        <property type="term" value="F:cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041667">
        <property type="entry name" value="Cupin_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003347">
        <property type="entry name" value="JmjC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050910">
        <property type="entry name" value="JMJD6_ArgDemeth/LysHydrox"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12480">
        <property type="entry name" value="ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12480:SF21">
        <property type="entry name" value="JMJC DOMAIN-CONTAINING PROTEIN 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13621">
        <property type="entry name" value="Cupin_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00558">
        <property type="entry name" value="JmjC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51184">
        <property type="entry name" value="JMJC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23362" checksum="16A57F7C410F2F06" modified="2020-12-02" version="1">MKAVHGTLNQAESLALPMKLFAKHSHEGRSDTWTYLQDELFIQLHPELREHLGNIIYLEEDFFEIFPKEVRPWNAMLLWGTAYSRSYLHIDPYNWTGTNAVFYGKKLWKLYPPGQDEYLYVMPDKKSEFPLNCYKYNSPIDAYNPDLKKYPKFSKARAISFEQRPGELLIIPPGWFHQAFNAVETIAVSSQVMNSQNYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KED5</accession>
    <name>A0A7D9KED5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009254</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031758">
        <property type="protein sequence ID" value="CAB4043198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KED5"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="44009" checksum="782186D054A14699" modified="2020-12-02" version="1">MIEKIQLELNSHDLAIKDDQHAFVKNRSTVSALISMTQKWFDVTDNSNIGRKGVHTTFLDFKKAFDLVDHRILLIKLAEMNVSKAFWSWVKCFLTERTQHVNLHGVISSSAPCPAGVPQGSVISPTRFNIHINDLENTLTNNFTNTHKYADDCTLDEVVANEALSNMQESTNQVMNWTNDNKMVVNPKKTKDMWISFSQSSPEPPPIQTDGIEIERVNSFKLLGVWVQNDLKWNTHVCKITKRANKLLFLLRECRKSFLPPEIGLLTYTSKIRPILEYASPVWGGIPKYLEVEIERVQQRSLRILGLEKDTLPTLKERRDKATCNELKRIVEAPNNPCNRFLSGNKNHTYELRRTRDSTPRQLSKTHRHSTSFIPRACRLTNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXJ4</accession>
    <name>A0A7D9KXJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015769</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011948">
        <property type="protein sequence ID" value="CAB4022389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXJ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16005" checksum="C0A0607BFE0CD8E7" modified="2020-12-02" version="1">MSCALRDWLWKIWLDWGLVVEILAGTPFMEANDISVRPARCTVLICDTSYTYGSNETKSPAVRCAVVLRAPSTSTTIWPGEFIEIAVPDGIPDNVYALEPRTAAPSAQFAKVSQCCWHETHSKPLRPAISFEAQWALLSTKLCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1F7</accession>
    <name>A0A7D9L1F7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026168</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011467">
        <property type="protein sequence ID" value="CAB4021496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1F7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="21"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="49"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="22548" checksum="6090CAEFBFCEB212" modified="2020-12-02" version="1" fragment="single">RQRQQQRQRQRQRQRQRQRQRQPQPQPQRQRQPQPQPQPQRQPQPQPQRQPQRQPQRQPQRQPQRQRQPQRQPQRQRQPQQQPQRQRQQQPQRQPQRQPQRQPQRQRQPQPQRQPQRQQQPQQQPQQQQQQQQQQQQQQPQQQPQQQQQQQHLFVSINLHFLQFYHTQQKDNCKTPVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L4B3</accession>
    <name>A0A7D9L4B3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039178</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012464">
        <property type="protein sequence ID" value="CAB4023360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L4B3"/>
    <dbReference type="OrthoDB" id="10353639at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="184"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="190"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22042" checksum="FFCD379F5858DB68" modified="2020-12-02" version="1">MDHNLGDILGPKRGNQPKNTAGKQKGEILAGYGEQYNPDGSVSMTNAEWPEYQMKDTPPVTSMHRQGLNSMLPGNAGVNGFQPMGGGDSPQVSPQAALNPSLLPGQKSDLGLGMGVGMDKSPMAPMMQKFVSDVADGKSMNKQLLNAPFEKPKIRNAGFRIPGEFSFKGEGKSLENQEEANFVKNFMSSKKSHTTRRKTGRKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L717</accession>
    <name>A0A7D9L717_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053404</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014933">
        <property type="protein sequence ID" value="CAB4027645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L717"/>
    <dbReference type="OrthoDB" id="425602at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="31064" checksum="0467F3803C1DF6B6" modified="2020-12-02" version="1">MSSRIVLRNCLYGINVNEGPLYFASPEIKDKINLVTYDENIPGSEIVNSILYNLCNVFPPQEDIVKARINDRSLESGLRAKWNESGSIWSSFLLAMNSETERSYQSSFVVKINNEDNENTQQYTRDIIDFAKSFGIPCILKLVPRETKPGYMVDIISCESQSPEIDRFEILPVKYSGYHPLFNFGHSIFKSFDETRNILDLADCHLTLPEIKKLKHLVEEYSKKTSPTKAAYPNPFIVVEGLDGVGKFILQVRIVEMRIILLFIPGSHALRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LQ65</accession>
    <name>A0A7D9LQ65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023309">
        <property type="protein sequence ID" value="CAB4037640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LQ65"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10940" checksum="B64B854FED1F6BA6" modified="2020-12-02" version="1" fragment="single">MVPHTENKVPHSENKVPYSEYKVPHTEDKFPHSEHKDRHSEDKVLTLRTRQVPQTEDKVPRSEDKVPHSEDKVPHSEDKVLHPEEKVPHSKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LS43</accession>
    <name>A0A7D9LS43_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021452</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024264">
        <property type="protein sequence ID" value="CAB4038488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6134459at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1896" mass="225531" checksum="D3FB0505785FC22B" modified="2020-12-02" version="1" fragment="single">NDLRETAKRETFASLTTQHLRNRREIDAILESQTEYANFTYTIKYEDNYRVWNNFSMMYQSRMYRYNEYRVTDDGLQVCNSSDPLNKHRWWDLIAREKEVLASKHCSVSVDVFYYSNYTLYKNFTVFFKPTEQSFPRQDYGVTFGYFAICSAKLNLSCNDYLVEVKHGDQYNVLQNFSLFYNNKMYDYREYRLENEGLEMCASNDSRIQTIWRTRNSWIKSKCILKCLKSLSMLSTRYYTVNKQLIVYVAVTSQYFTRNAYGVKNGQLYICQEKFRPTSIEYTQEDLLMCNDSIINIKYDDEYKVEIDFSILYKNKVYDYTEYRVLNDNIKICNSTDNYVRNIWKVRNKWVKATMHEKSCSKPIRTFRLNRKYYSVNKQLTVYDAPASQNFTRNDYGVKDGRPYICQEKFKPTSTEYTQEDLLVCNDSIINIKYDDEYKVRTDFSILDKNKVYDYTEYRVLKDSIKICKSADRYVKNIWKVRNKWVEARMHEKSCNKPIRTSRLPQKYYIVNKQFTVYYAARSQHFTRNDYGVKDGRPYICQEKFKSKSTEYSQRDLLMCKDSIINIKYDDEYKVRTDFSILYKNKVYDYTEYRVLKDSIKICKSADRYVRNIWKVRNKWVEARMHEKSCNKPIRTSRLPRKYYIVNKQFTVYYAARSQHFTRNDYGVKDGKLYICSEKLRPISTEYSQKDLLMCNDSIINIKYDAEYKVRTDFSILYQNKVYDYTEYRVLNDGIKICNSIDNYVRNISKVRNEWVEARMHEKSCNKPIRTSRLPRKYYIVNKQFTVYYAARSQHFTRNDYGVKDGKLYICSEKLRPISTEYSQKDLLMCNDSIINIKYDAEYKVRTDFSILYQNKVYDYTEYRVLNDGIKICNSIDNYVRNISKVRNEWVEARMHEKSCNKPIRTSRLPRKYYIVNKQFTVYYAARSQHFTRNDYGVKDGKLYICSEKLRPISTEHSQKDLLMCNDSIINIQYDAEYKVRTDFSILYQNKVYDYTEYRVLNDGIKICNSTDNYVRNIWKVRNKWVEARMHEKSCNKPIRTVRMYRKYYAVNKEFTVYDAPPSQYFTRNSYGVKDDRPYICEEKLRSSSTEYTQEDLLICNDSIINIKYDDEYKVRIDFSILCKNKVYDYTEYRVLNTDSIKICNSTDNYVRNIWKARNIWVKANIYGKSCNKPITYIQFDRWEYTVLQNFGILISATKQLITKYDYAVYEGKLITCVTECANFTFTIKYEDEYRVWNNFSMMYQGRMYYYDEYRITDDGLQVCNSSDRLIKEKWRNFIVSEKITTAFKHCNVSVDGFYSENYTLHTNLTVFFKPTNQNFTRQDYGVIMGYFAICSRKLRLSCNDDLVKVKYDEQYNVFKNFSLVSNGKMYDYREYRLSHDSLEMCASNDSRVQAIWRTRNSWQKSLPALCYRSYKLNARYYTVTKQFAVYSADNGQYFKRNDYAVLDGKPYVCGKENLSPIYVISNFKIIIAPLCALALSIISLLLLLIVYCVLPELRTLPGLNLMSFSFAMLLWQTYLVVFLSLYSHVGKLFEIPCARLFVANKFMTYSIIMNAAVNIYHLRNTFCGNILVKSDEQKKWNRFLKYSFFSWGVPVIITIVYIVLAKKNVLRFDQNIASMSIKNDVQSSLRFYRRNANGDATANNMGIYHRIASLRGDALQSKWRLNQSTDTVLEDAQTRLNQSTDTVLEDVQTRFNQSTVLGKEDATEDDARIYQPIVSLKKDVQSSLKFYQRIVFANGDGKEDDARIYQQISGDCINGRITPDWSAAVDVYGIQGCLLLYIIGMFIFTAYRIRQKLKASKNIAQKSNIVKRHKFVILLKLSTTTALSYWFPLFISRIVDFDFDIKIALYTVTLLTGAYIGIAFVFTRRNYQLFKKKYFPAKNKPPVNEIPLDKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LW24</accession>
    <name>A0A7D9LW24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008345</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026672">
        <property type="protein sequence ID" value="CAB4040352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LW24"/>
    <dbReference type="OrthoDB" id="6368171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21053" checksum="BFD5EC934648048D" modified="2020-12-02" version="1">MAATPSFPEFDVEDPSNLAVRWEEYLKRFNNLVTAMNFRDAARKRALLLHYVGERVNDIFDTLPDRGENSNFNAACDALTAYFTPKKNTKSIDEYHTRLQIAAKYCEFRDHYTEVKLQIELGTSSKKIRQHSFRKPSLTLTDLISYARTLTETEKQASGIANSSFNMPSSAEINAVNKDNSSPND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ME24</accession>
    <name>A0A7D9ME24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032401</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042776">
        <property type="protein sequence ID" value="CAB4045877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ME24"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38681:SF1">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38681">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="27638" checksum="2720ED7EA75BA136" modified="2020-12-02" version="1">MSVHGTGASASACAKHLANWCASFGVPSYLTTDRGPQFTSKLWEETTKALGIKHRLTTSYHPQHNGKVERSHRSLKNSIRARLDGRSDWLAELPWVLLGLRNSPNTDSGISPAELVFGEPLRLPGNLQAKPASISHETWAAQLRNSISAQSAPSPEWHTATKPTSYIPKDLDRCEQVLIRQDRTVPSLRPKYTGPFPVLQRSDKVYELIVNGKPDKVSVDRLKPFYPTTDSTTGRGLCRESNESTVAEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL78</accession>
    <name>A0A6S7FL78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034649</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000082">
        <property type="protein sequence ID" value="CAB3977972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL78"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="22811" checksum="6A236E97571040E5" modified="2020-12-02" version="1">MAEVSEKKFWVEMDDKFMRTSIEVFALEEVKNFKLEKPEHWLGTAEQQQHLFEHIVARYLWKHVYECLPTEHSGVPSAIVLKIWADNFTNDIATGWGSMVKTFLKCISVFGVIQPEGIFCQKTIPELLKMKYHFHNMNAGSKTRIMDIRYRQVYELVDLVYFRSVENIFKKYIRKNCESEINNFKKLKINCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLI2</accession>
    <name>A0A6S7FLI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037433</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000311">
        <property type="protein sequence ID" value="CAB3980664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLI2"/>
    <dbReference type="OrthoDB" id="5987552at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579:SF2">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579">
        <property type="entry name" value="F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="34629" checksum="65C69935AA6272B6" modified="2020-12-02" version="1">MHLHCILDFGPVYSFWCFAFERFNGILGSYHVNNHNIEVQLIRRFLENQQIGSFHWPDEIAPLKTVLRPSLSLKGSLAAVARVTGDEHRQALRQINSRGDNLKERDYTSGKFYLPLGTIKAKYLCDEELSDIRSMYEKLHEPGEIESVHQYYEEFYELLNVGELFGSKMSRNSGSFFILARWHGQLELDTVTSDRRPGEIDHFLRHKLTVWNGDGGNTVLRYIVACVHWLKLHPHCRKYFGLPVQVCLQDYELPSSATFIPVGHISHRCAAAKVKYNLRTINGDEQIVVITPIERQFYM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQ47</accession>
    <name>A0A6S7FQ47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A047420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000429">
        <property type="protein sequence ID" value="CAB3981795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQ47"/>
    <dbReference type="OrthoDB" id="10049726at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22750" checksum="4BA7DFEB0FE6AF08" modified="2020-12-02" version="1">MAIRFGRNPTEICLIFNEVLDLVYDAHHHRLESWNQPFLSPELLQNCADAVHDKGAPLENCFGFIDAGTVRPIARPKYYQRQMYNGHKRVHSIKFQSVVLPNGLIANLAGPYEGKRHDSTMLRVSGLLASLRQVAFHNNQPLCLYVIQLTHWEFICKHRLEIGSLHLKSASKITQIRPVLDLKVDSLPGNNVCKACFLKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FT67</accession>
    <name>A0A6S7FT67_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000281">
        <property type="protein sequence ID" value="CAB3980343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FT67"/>
    <dbReference type="OrthoDB" id="15794at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026669">
        <property type="entry name" value="Arsenite_MeTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43675">
        <property type="entry name" value="ARSENITE METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43675:SF1">
        <property type="entry name" value="RIKEN CDNA 2700097O09 GENE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21060" checksum="7E773BA919DB7D9A" modified="2020-12-02" version="1">MSIIQMKYIFKTVLPRMITDFTNTTLIDVGSRLGAVLFGAYYFSKFNKIVGVEMNAELCHIQNEIIHKYALGNRIETVCSDVCNVGELLNQADVILLNNTFEFFLQRDVQISTWQNIRRNICKSGCILITVPSLEESVCIGDEGQPILDLNSWLVPLNVNASDLKLDYSEDELDELSNIHFYKVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4N1</accession>
    <name>A0A6S7G4N1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A015868</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020000316">
        <property type="protein sequence ID" value="CAB3980720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4N1"/>
    <dbReference type="OrthoDB" id="5976830at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1800.10">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004211">
        <property type="entry name" value="Endonuclease_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038563">
        <property type="entry name" value="Endonuclease_7_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02945">
        <property type="entry name" value="Endonuclease_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="840"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3980720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="840" mass="96161" checksum="501E3F2F4FA3F61F" modified="2020-12-02" version="1" fragment="single">MDGLKKFEFKKLLEKHHSGEDYHKLLDCLMKVRKVVDEMDGVRMPQLKSVVLRTCSRLGIDTAITDSKSKDIILQNEDTLFGKIYPVLGWEPHAGSNGCYDAKDEARDKEIKELKKKGEVSEKKLKALEKDNRKLKKEGEFNKKSLGVLRNDNRKLKRNIAAMRVGEEGIEVIGGTATPILHKTINYEKTGESDEGTIEKFTLGISKPDFGGQLDVSRKIVGDLLKSVLDRPVKFVETLVLKMVKGLLSKNTDVDLPMESETITVMNASEVEDAVRLSAERIIAKIESYQDRGSNWRVILVEKHEVDVVHFNPLVGSSFIELPAPLKSNMNGLINIENADDDECFRWCHVRHLRPGQRATKITRSDRKFAKTLNYNGIKFPVRIDDIPKIEKANELRITVIMLRGEKMFFPRYTSKFDYKDHMELLLMDDGEGNNHYVLVRDISMLLNSLSKTQHKRFFCLGCLNGFNSQERLDKHSGTCREFVIYADFESLLIPVDGKGECLRKTHDHEMCSYGFKRACYYDGKYDGEYKSYRGVGAISRSLSELLGEVEKCNGIIQSEFNKEVVMSVKDYDKLEKATECHICGGKFGESDKKVLDHCHVTSKFRGAAHNSCNLNHKLTGKIPVVFHNLRGYDGNFIMQGVKELGEKIEVIANNMQKYMSFTVGKQLVSIDSMQFMSSSLENLVSNLSDDRFKRMQCEWQGQELEMLLKKGVYPYEYMSCWEKFSEKSLPEKSAFYSSLYEEEVNDDDYLRACKVYEKFSCKNLGDYHDLYLKTDVLLLADVFEDFRRVCLESYKLDPAHYISAPGLSWDAMLKRTGVKLDLLSNVDMYQFIEKGMRGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G509</accession>
    <name>A0A6S7G509_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA alkylation repair</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000327">
        <property type="protein sequence ID" value="CAB3980820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G509"/>
    <dbReference type="OrthoDB" id="429969at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07064">
        <property type="entry name" value="AlkD_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014825">
        <property type="entry name" value="DNA_alkylation"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34070">
        <property type="entry name" value="ARMADILLO-TYPE FOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34070:SF1">
        <property type="entry name" value="DNA ALKYLATION REPAIR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08713">
        <property type="entry name" value="DNA_alkylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="30428" checksum="3B0C007B027BC6C2" modified="2020-12-02" version="1">MDTRQKRKIQGDNDRPSKKQRTGNSVQIITQLEKALHSKGNATDAGAMKRYMRDKFQFYGLKSPIRRGIMKEILAGKDNGLLAKDVREFAQMLWGKPQRELQYIAMEFLVKHRKILCENQADFEENIEFFKMLVTSKSWWDTVDMVAYKLVGYLVQTHPTKGKPVMLEWISSDDMWMRRTAILHQLCCKESTDEDTLFQFCLARCHEQEFFIRKAIGWSLRDYARVKPNKVKKFLQEHKDSLSKLSFNEAAKHLNIAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBI0</accession>
    <name>A0A6S7GBI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000935">
        <property type="protein sequence ID" value="CAB3985896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBI0"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="23131" checksum="0D58E599DCBDCDFB" modified="2020-12-02" version="1">MGIEKSERRARDALYWPLMSKQIAEMVSNCSRISSIRRKLGIQACGPVSLLNPQANGLAERTVQTIKDLLVKSKKDQRDSYLNMLEYRNAPIDDVGSPAQLLMNRRLRSGIPQTISHLKPRVPDSVKVKKKLNLNQHKQKFYYDRQSKSLTKLHEGDRIRVRMKGSWKPGVVTREEQTPRSYRIRLMMVVVHIGETEECF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFB1</accession>
    <name>A0A6S7GFB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054949</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001650">
        <property type="protein sequence ID" value="CAB3990385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFB1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="188"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="229"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="301"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="229"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="250"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="301"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="395"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="421"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="624" mass="69499" checksum="6AB99A1AC463621E" modified="2020-12-02" version="1">MLFSSKAGLLPTPNSTKIYSKNPNDFIKTSNYPIPFQAANIVESFNINCQPTWDISVSPKLVKFKAEWDLASQVYSNSTNADAFPKAVVSSLATYNLVQPAWNTSFNGKKLCIKIDWKISESFGHNNTTFDGQSSQINSSNFPVNSSLNFSTPFNSHSSSYQADSGYKSSNKPDKHYYSPVYYSPTVNSRPNYDVNTDNISRFPTTPRANLFNSHRNSLDRQDLYVPQSRNSVNCSSNSCKISKSENTDKYSPTVKQQQSQSTIEAEVASIKSHATDIAPEMDNNNAPVADNVVIHELSTLSEKSSPSSPNNIPITNNPSVTQHVPNPPESYSPSVDPPVSKTTQSVPVEEVKFPDKPPSQLVHDGPPPSEFTHIEPPKSHFPPSDPSAGGAIKPKSRKKKKSQHNNNPPIAVPPATQPPSQTHPTNLTCKSSATNAAENPDNRSAQILPSSRKFVIADRSKDGDIITDLTPQTPKFDAQNEFFLDTPKNFHVKSDGLLDLNLLADRMNITGKCRLCKAVVKSFNADLHLLECRRIDKNDIDNFAFEYADITNNNYDEIINIIYDYCNYVMHDDDVSYLFPKVSTFSKFLDDLEHLLDQKASKVYKKSEITGQQMRFNILNYSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIU2</accession>
    <name>A0A6S7GIU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">THAP domain-containing 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A030879</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001931">
        <property type="protein sequence ID" value="CAB3991868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIU2"/>
    <dbReference type="OrthoDB" id="5985949at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.210.20">
        <property type="entry name" value="THAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038441">
        <property type="entry name" value="THAP_Znf_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027805">
        <property type="entry name" value="Transposase_HTH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF141">
        <property type="entry name" value="TRANSPOSASE HELIX-TURN-HELIX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13613">
        <property type="entry name" value="HTH_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="98"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="111"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3991868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="482" mass="55368" checksum="03BCDFB4228FF6E0" modified="2020-12-02" version="1">MVRADRCCVGPCDNDKRCPKRLVVMEHVEELKWHRFPTKDENRKRKWASLVAKGRCEFVPTDNSRICSNHFPDGKPTNKNPNPILYLTLDDYRHPKKLNLRESPSKKRKVSSCSPQPSCSTMDEQEECSENPIPAIDNVNIAIAMQFAQITRESDVRFFTGFESTKSFQEIFNFLVPRARLMKYWEGVKRSSGVEREEPNQQRIDTIILSNVYAEGSVLPINKPGPQRKTTLEQEFLLTVMRLRLGLLIKDLAFRFQISTTRVSQIWITWVKLLSKELRHLIIWPSKGQIYATLPDAFKRFYPKVRVIIDCSEVFLETPSSLEVGAYLWSDYKHHYTFKFLIAITPNGAVSWISPCYGGRTSDVFIVRNSGFLDLLEPYDTVMADRGFKIKSDLTMKRCYLAIPPSAAKGNQMISDDVAVTSKVANVRIFVEKAIARVKWFRILSTELTMLELPLVDDILIICCALVNLFPPLQAEKIDIDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRM8</accession>
    <name>A0A6S7GRM8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Integrin alpha third immunoglobulin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A057239</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001140">
        <property type="protein sequence ID" value="CAB3987230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRM8"/>
    <dbReference type="OrthoDB" id="5317514at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009897">
        <property type="term" value="C:external side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008305">
        <property type="term" value="C:integrin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005178">
        <property type="term" value="F:integrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033627">
        <property type="term" value="P:cell adhesion mediated by integrin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007160">
        <property type="term" value="P:cell-matrix adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007229">
        <property type="term" value="P:integrin-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.930">
        <property type="entry name" value="Bicelle-embedded integrin alpha(iib) transmembrane segment"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1530">
        <property type="entry name" value="ntegrin, alpha v. Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048286">
        <property type="entry name" value="Integrin_alpha_Ig-like_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032695">
        <property type="entry name" value="Integrin_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23220">
        <property type="entry name" value="INTEGRIN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23220:SF122">
        <property type="entry name" value="INTEGRIN ALPHA-PS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20806">
        <property type="entry name" value="Integrin_A_Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69179">
        <property type="entry name" value="Integrin domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0401">Integrin</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="Integrin alpha third immunoglobulin-like" evidence="7">
        <location>
            <begin position="5"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="19"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF20806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3987230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19036" checksum="CD91828B74F7B1E8" modified="2020-12-02" version="1">MFKDDSNRVRRNADDSNKDTAASAETPTQSRKGSASTIILDCANGTAMCFSIPCTLSNIAKGTKVDIRMESRIWNSTLLEDYTDRDVQVVSRGRIDDLTSYVSDDNTEGHEVKTITSFFPDAPKTIKKDIAVWIIVVSAIAGVVLLIILVVAFKMCGFFNRSGGQRYDSVPEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTT8</accession>
    <name>A0A6S7GTT8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Latent-transforming growth factor beta-binding 4-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A080903</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001254">
        <property type="protein sequence ID" value="CAB3987940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTT8"/>
    <dbReference type="OrthoDB" id="19903at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013151">
        <property type="entry name" value="Immunoglobulin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039:SF58">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039">
        <property type="entry name" value="FIBRILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00047">
        <property type="entry name" value="ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 5" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="271"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="305"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="308"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="5">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3987940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="45121" checksum="3FAD8E3A69B0AF49" modified="2020-12-02" version="1">MARTCFESTEYNDVQSSSIPAIPGLSANIKEKNNQQEAPLGFDHSWEAQRFINTDSLVEDESNMGQIVALRERRDSPKSENKNEGYEGCGSADICDTTMHDCHQNATCSSAMSDREYNCTCNKGFSGNGTHCEEIIMKGCENGKSPCSKNAQCNYRMDSVECTCTENFYGDGMRCTELRSNYSSRKVYTKPGEPAVLVCSLNETIQWKKDGKIITNDGNIKIFQNLLVVNSVDDDDYGEYFCELQNYKGKGITMRLIMINDDANGDESTKFLIPFIVILILLVCLLIVTGYLLLRRRPKLATTIQRDPSARDNDYDNDKSSEISMKERLPSGETEEEKYNTLSNVREEEPFYQPLVDVKCEETSPQSMSEASRSNIYEEDAYDNIGAIKDENNHIYAEAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUJ9</accession>
    <name>A0A6S7GUJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060147</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002711">
        <property type="protein sequence ID" value="CAB3995688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUJ9"/>
    <dbReference type="OrthoDB" id="5969298at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="18871" checksum="8B97F9EF6415A6DF" modified="2020-12-02" version="1">MVLKNIFSSPEFLLESNQVHSCLAQPEEVEDTVQTLKDNTYVDNIMQIGSDVSELEGAKLPLHKWESNVESLGSEDMPNPSKILGLVWDKKEDELHISTPEYPEGAKVTKKSVVSHLGKVYDPLGRVSPTMAEGKRIYREACNEAELGRGDFKALRTRLVKVDKTVTNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVK6</accession>
    <name>A0A6S7GVK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002368">
        <property type="protein sequence ID" value="CAB3993986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVK6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="390" mass="43993" checksum="DD29CE773DCD956D" modified="2020-12-02" version="1">MISIIDKQYANDLAAGNIDMKNGNKQNSFPCLQMINVPVTKDKCTSDALNTDEETELDVTVTSIDNSWFSWRMPCFPVMYIEFTKAKIKINGKNFNGLVKRGLDISPGKVKCASYCQVKIDEVDYTVLWKFSNCQVELCEATAQAAAEPMPAPKESYESDTDTQHTLPFKVLGTCHSTCRQDALEEAYSYLNEYNRPVFVILEHEVDNAYDSNAIAVFVQTDYEYKKGTFALDRLGESTEVKDTVNYMAAKFLQATDEAIHEAKRRLHLADEIIHAAGCKTTTSSVETAIRSSSHSPLKSERRKALADAAAAKEQAEYEMIIAHKINERKQLEAKEEHRRLTEKAQYEHDVAILEAKKTEAIAKAKLDAIEQSITDDEIKSHRDRSHRPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H006</accession>
    <name>A0A6S7H006_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002774">
        <property type="protein sequence ID" value="CAB3995989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H006"/>
    <dbReference type="OrthoDB" id="6614843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18123" checksum="533DF3A57CD379E5" modified="2020-12-02" version="1">MCCIFSSAEPPAPAGQNVVDENIPTAAKEPSLQQTIADDGKVIKMECDPSRTTLKRTSGEIGKGLSKRTKADLSDVDSLDIGRFVSVAGIDDDTKFNLINNHWKPPPDFNFPSSETSRRKFCASWLHRRSWLCYSKLYNGAFCLSCVKLDVTAQNYPSYLRNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H3A9</accession>
    <name>A0A6S7H3A9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060249</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003514">
        <property type="protein sequence ID" value="CAB3999094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H3A9"/>
    <dbReference type="OrthoDB" id="5949994at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="387"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="394"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="46501" checksum="CD2CD4D410678529" modified="2020-12-02" version="1">MDKNCTMFMYNVQWLELMGPENDMANLIEHLLDLSFSSLVEAHPEFGFHPTCYRRYIDGKRICAAKKRKAKDKHEQQSQECELVEKRARRSLGPVLPVKCIICDEPDKFVQDPISRKRIRDRLSKAETEDAGNLRSAATYKNDEKILVHIRDKDCAAIEVRYHPSCYKKYTRCLRSRHFSDGKNTRKDKFEIHKNGYLKFCESVVHQRLLVNQEILRLSRLTQLVITSIQNVEGVEPVGIRNDKLKLRLQKDYPQLVFHKPARKNESEIVYCSAVPVGNVVADSLDLSESSSNNNSGPETYDEVFLGESSCTSTLLDQHVDRSLYVAGLMLKNIIKDAPRMTSKWPPTANEIRNEGVEKFVPYQLFNLIAVCIGATEEPSLTFYADVDDDTRNKSNSVTQSKSNSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4R8</accession>
    <name>A0A6S7H4R8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001874">
        <property type="protein sequence ID" value="CAB3991560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4R8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="18915" checksum="F15A838B84494239" modified="2020-12-02" version="1" fragment="single">MIDGDLGAMVMMNVLSDDNDSVNGNDDNGNDGCDDGDNDGSGDNDDSDGNDDDGNDDNGNDGNDDDGNDDNEDGNDDDGNDDEDGNDDDGNDDDDDGNDDDGNDDDDNEDGNDDDGNDDDDNDGNDGDNDGDGNNDDDNDGVCGDNDDSDNDDDDNGNDDDGNDDDDDNDGVCGDNDDSDDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6P3</accession>
    <name>A0A6S7H6P3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A007265</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003653">
        <property type="protein sequence ID" value="CAB3999706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6P3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="53"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11604" checksum="1B106527FF2FB3BA" modified="2020-12-02" version="1">MEDKPEQTQAVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAEPEESSSNNMIAYVGVVIALISLALAFNQHWRETEKPEPKCIPETVEVTRKTDASKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCM5</accession>
    <name>A0A6S7HCM5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A035600</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003967">
        <property type="protein sequence ID" value="CAB4000947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCM5"/>
    <dbReference type="OrthoDB" id="2423195at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031380">
        <property type="term" value="C:nuclear RNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031048">
        <property type="term" value="P:regulatory ncRNA-mediated heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045055">
        <property type="entry name" value="DNA2/NAM7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887">
        <property type="entry name" value="DNA2/NAM7 HELICASE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887:SF341">
        <property type="entry name" value="NFX1-TYPE ZINC FINGER-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA2/NAM7 helicase helicase" evidence="2">
        <location>
            <begin position="88"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2/NAM7 helicase-like C-terminal" evidence="3">
        <location>
            <begin position="169"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4000947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="32410" checksum="C6B66C5F26572274" modified="2020-12-02" version="1" fragment="single">MGDDLDTSSTEDTDDNEPLTDDIKIPFLYKNDRESAEDVEEELNLWTLSDQERLNFICALQCKIVLEFSEAVNLYEENAKCHQDFLDDRTVNILEEYDVIGMTVTGAATRLHLLDQLKPCAVIVEEAAEIIEGQLISVLPPSIEHLVMLGDQEQLQPRVNCYKLTQKNLDCSMFERLINNKMPFQQLGKQCRMRDDIADLLRSLNIYKDLKTNKEKTCNNKPPDCIGASLYFVKHTAQEKQIKGSNSLYNQKEILLILDVAVHLMKNGYPPEYVTVLCPYRGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HG59</accession>
    <name>A0A6S7HG59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003374</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004635">
        <property type="protein sequence ID" value="CAB4003456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HG59"/>
    <dbReference type="OrthoDB" id="1730821at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="365"/>
            <end position="541"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="632" mass="70557" checksum="F1A8413E7D20510B" modified="2020-12-02" version="1">MPNTRYKVTCVLCKKVFDNDHKGKHCKAMHPEYTASTLPLLLKNQRQLLTVAVSDSLALTTKVNANFSWSEEENQDDSAPAGPSIDRDSPGITPENLTSVDSDADSDNDSDIVIKTTSEYTSWISCFGKLSHLCGNLSECQELISRVEKVDAPQPENLLGKLLDVVERVCDLSTSLLSDTHQALAGINSQEKTTEFASTKFTPINCDPGCRRRILTDEDRTCMIQQGPFQPMLKSYPRNIKIAESKQCHFSSEWYNSYPHLEYSITKDAAFCFVCQVFSSGIGNPKADEVCDAWTVDGVRAWHKMKSRGKGNAGKLSQHFASSGHKAALNAFLAFQNMSSHLALLLDKERRKVLIEEEAELQRNREAINTLLDITQTLARQGISFRGSSSEKDGNGNFRQITSLVARHSPSFKRWLDDAPRRPHRVDYLSSRSQNEFLDLLAEDVTCRVTAEINQAGMFSVIADTTPDVSHVDQLSVVARYVDAEGNPQERLVDIKVIHDKTGDGHAQGIISSLNEKCLDTADVVFQSYDYTSSMSGIYKGCQAKLKECLGKEVPYFLCLAHRVNTTVEYSCEASDTVCNMFDILQELFVFFTLSAKRYNVFHEIVKKSDVEGALELRNLSATRWSARADSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HG68</accession>
    <name>A0A6S7HG68_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Amino acid transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A074326</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004637">
        <property type="protein sequence ID" value="CAB4003466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HG68"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="entry name" value="Sodium:dicarboxylate symporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050746">
        <property type="entry name" value="DAACS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958:SF63">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958">
        <property type="entry name" value="SODIUM/DICARBOXYLATE SYMPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="Proton glutamate symport protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0769">Symport</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4003466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17148" checksum="8F01CF16BBD5CBA9" modified="2020-12-02" version="1">MERILYDQLYNYLTKFELLSDSQFGIRKFHSTASALLDCTNDCLLSSIATLAAPPIPASTPLAVHGLVLPFIGIPKADIGLIVAIDWFVDRFATPVSIWANCIACVIIEHYSREDLQSLNDVTTPREEICTTVGSDANSDVTIDVAEEEEVTTEIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJ90</accession>
    <name>A0A6S7HJ90_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005137">
        <property type="protein sequence ID" value="CAB4005234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJ90"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="16670" checksum="8F079641E8817E8A" modified="2020-12-02" version="1">MKGSLPTRENVLPLLSDIVRKKGTGKFFDTAAPRPHADCGSCVLPQERILKEEFAIRYPTINKQPRELFPSGSSSTVGSMQEVDDFKLAVELQYAENQAKNMSFGTEYCIKGNKCHNPADSMLDNSSEDDMDGTNNAATALLSLNNINSVSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJT0</accession>
    <name>A0A6S7HJT0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CLIP-associating 1-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A030971</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004631">
        <property type="protein sequence ID" value="CAB4003440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJT0"/>
    <dbReference type="OrthoDB" id="5983127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015631">
        <property type="term" value="F:tubulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034085">
        <property type="entry name" value="TOG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048491">
        <property type="entry name" value="XMAP215_CLASP_TOG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21041">
        <property type="entry name" value="XMAP215_CLASP_TOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01349">
        <property type="entry name" value="TOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4003440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19851" checksum="6473D32CDCD5979B" modified="2020-12-02" version="1" fragment="single">MDDYPELSHLIAMVQHHDTHKKMLASEELKEYLSNPLSPLTADAIDCLVDNLKTWINSGNYKISASGLELFTILVRRGGKSVKLNLNKVIPIIIDRLGDSKAVVRENSRLFLLELMNAMTPQAVLDMLIPAFSHKGYKVREEVLTCLMDAINTFGVSKLSVSKFTPHICKLLGDANSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HK37</accession>
    <name>A0A6S7HK37_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Choice-of-anchor A family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A007103</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004725">
        <property type="protein sequence ID" value="CAB4003783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HK37"/>
    <dbReference type="OrthoDB" id="288590at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isopenicillin N synthase-like Fe(2+) 2OG dioxygenase" evidence="2">
        <location>
            <begin position="238"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="152"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="29211" checksum="6160EFBC860DDEC1" modified="2020-12-02" version="1" fragment="single">DKAPGGGDKVPGGEHKVSDSEDKVPGGEDKLPGGENKVPGGEKVPGGEDKVPGGEDKVPGGEDKLPGGEDKVPGGEDKIPGGEDKVPGREDKVPGVEEKVPGGEDKVPGGEDKVPGGEDKLPGGEDKVPGGEDKLPGGEHKVPGGEDNVPGGEHKVPGGEDKVPDGEDKVPGVEDKVPGGEHKVPGGKEKVPGVEDKVRGGEDKVSSGEDKVPGGEDKDRSFFTKAHGTFGTPDNKTSLRLLYYPFDNDLKAGQLRLGQHTDYGTITLLVQDQTGGLEICADAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNY4</accession>
    <name>A0A6S7HNY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047213</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002916">
        <property type="protein sequence ID" value="CAB3996651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNY4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13089" checksum="66343DD54D758C97" modified="2020-12-02" version="1">MLSDFEPGRLSTNPQSIPEIAKNVTQKVAKNLTKVLLKSKVPLKSKVPLKSKVPLKSKVPLAEIKSTTEMTNNTNVNSQSSYCTVNEHIVNMAASRKATKNMDNAISSEQIGYQSRICQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQD8</accession>
    <name>A0A6S7HQD8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 15">Glutathione synthetase</fullName>
            <shortName evidence="15">GSH-S</shortName>
            <ecNumber evidence="4 15">6.3.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A014640</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Catalyzes the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Glutathione (gamma-glutamylcysteinylglycine, GSH) is the most abundant intracellular thiol in living aerobic cells and is required for numerous processes including the protection of cells against oxidative damage, amino acid transport, the detoxification of foreign compounds, the maintenance of protein sulfhydryl groups in a reduced state and acts as a cofactor for a number of enzymes. Participates in ophthalmate biosynthesis in hepatocytes.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>gamma-L-glutamyl-(2S)-2-aminobutanoate + glycine + ATP = ophthalmate + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:72075"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:189406"/>
            <dbReference type="ChEBI" id="CHEBI:189750"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="13">
            <dbReference type="Rhea" id="RHEA:72076"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>gamma-L-glutamyl-L-cysteine + glycine + ATP = glutathione + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13557"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.3"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="12">
            <dbReference type="Rhea" id="RHEA:13558"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15 17">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="15 17">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 15">Sulfur metabolism; glutathione biosynthesis; glutathione from L-cysteine and L-glutamate: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the eukaryotic GSH synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.3" evidence="4 15"/>
    <dbReference type="EMBL" id="CACRXK020003175">
        <property type="protein sequence ID" value="CAB3997750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQD8"/>
    <dbReference type="OrthoDB" id="2020073at2759"/>
    <dbReference type="UniPathway" id="UPA00142">
        <property type="reaction ID" value="UER00210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043295">
        <property type="term" value="F:glutathione binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004363">
        <property type="term" value="F:glutathione synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.50:FF:000001">
        <property type="entry name" value="Glutathione synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1760:FF:000001">
        <property type="entry name" value="Glutathione synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1760">
        <property type="entry name" value="Glutathione synthase, substrate-binding domain superfamily, eukaryotic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1080.10">
        <property type="entry name" value="Glutathione Synthetase, Chain A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005615">
        <property type="entry name" value="Glutathione_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014042">
        <property type="entry name" value="Glutathione_synthase_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014709">
        <property type="entry name" value="Glutathione_synthase_C_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037013">
        <property type="entry name" value="GSH-S_sub-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004887">
        <property type="entry name" value="GSH_synth_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01986">
        <property type="entry name" value="glut_syn_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11130">
        <property type="entry name" value="GLUTATHIONE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11130:SF0">
        <property type="entry name" value="GLUTATHIONE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03917">
        <property type="entry name" value="GSH_synth_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03199">
        <property type="entry name" value="GSH_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001558">
        <property type="entry name" value="GSHase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="PreATP-grasp domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 15 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 15" id="KW-0317">Glutathione biosynthesis</keyword>
    <keyword evidence="6 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="11 15 17" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 15 17" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 15 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutathione synthase substrate-binding" evidence="18">
        <location>
            <begin position="87"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <begin position="249"/>
            <end position="258"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="260"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <begin position="281"/>
            <end position="284"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="336"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00052123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00059746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRNR" id="PIRNR001558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR001558-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR001558-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF03199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB3997750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="40273" checksum="56A51D44A7588A3E" modified="2020-12-02" version="1">MLWFFPYQVYDSGYFAHAYALSYNSDTTIADDVVELMVVQNSCSIRYVRENYADSDKITEKLPANGAAQGLGKGIVTAWSLYGNESAVVLMVVQSGEKNRVDQRVLEYSIRQSNPAVKVIRRTLQEIEENGELKDDKKLVIDGKEIAVAYFRAGYTPKDYYSEKDWSARLKLERSRAIKCPTIAYQLVGTKKIQQVLAEPGVVERFLDDPEMVARIRKTFAGLFSLDNGEEGNKNAKMAIENPDRFVVKPQREGGGNNIYGEEIRDVLSKEDNSRTQYVLMEKIRPPVLKNYIVQVHKDEILEEDVVCEYGVFGVVISDGDEIVENKVVGHLLRTKSIIHDDGGVAALRAVLDSPCLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HRU8</accession>
    <name>A0A6S7HRU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">L-ascorbate oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A077759</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multicopper oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006069">
        <property type="protein sequence ID" value="CAB4008254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HRU8"/>
    <dbReference type="OrthoDB" id="2121828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF394">
        <property type="entry name" value="FI03373P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0186">Copper</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="8">
        <location>
            <begin position="16"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="6">
        <location>
            <begin position="154"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="7">
        <location>
            <begin position="462"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="647"/>
            <end position="680"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="7"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4008254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="680" mass="77525" checksum="DB2E862E21A00A97" modified="2020-12-02" version="1">MTITRNADVEKRGDEGSKYSVNDGRIGPTIIINHDQILVVDVINNLPNDNTSIHWHGMHQNNVGWIDGVGMITQWPIPPNGGKFRYILRAHPSGTNWYHSHTGEQRDNGIFGALIVKEKREVVCTLSSRMKINSIHDNQYHMMAVTEHMKMQRPTDEQCTSDASKPATDLQIQSFQINGKQLNQTIDEKGETNQEPSFAVSPGENYRFRVLGAMEETVIRVSIDDHTLVVVATDGYLTEPFEADILHVHAGERYDFILKARHKISLKTVFPIRIESVDVYCKRHNIPARVGFAYLKYSNSGTNIRGKVPKSSKQCIKDCKALNCPFAAYPVDHKDLTNAPSYNCIDVYDALSLLVPTPDYELSKEETPASTKFFNHAFNDTSHNEFTARINNIHFTFPKTPFPVRGLENRVKDECPYNTTEECKRCPHTVSVDQKDQLKPIEFVLSSLPREEKFETDVVTKLGTHPIHLHGRSFWVKEIAYPKYFDNGKIREDNDDVEVPRCGFGKWKNGRPSSIKPVNKTSIRKDTIIVPAGGYVVIEFVAHNPGSWLMHCHIDHHLEVGMGIVIKELPKCANPPPSQFMKLTKKVCISVDEFLERESNFTLCPDIKIAVGQKTPRELQKDEFEDFNSFNDDANDESAYRKLKKSLDYEEEQQHPRSNLRGFQNGKALNGESREWFKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HS10</accession>
    <name>A0A6S7HS10_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FERM domain-containing protein 8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029139</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006261">
        <property type="protein sequence ID" value="CAB4008885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HS10"/>
    <dbReference type="OrthoDB" id="2142533at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090090">
        <property type="term" value="P:negative regulation of canonical Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014352">
        <property type="entry name" value="FERM/acyl-CoA-bd_prot_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035963">
        <property type="entry name" value="FERM_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019748">
        <property type="entry name" value="FERM_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000299">
        <property type="entry name" value="FERM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051594">
        <property type="entry name" value="KRIT1/FRMD8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057096">
        <property type="entry name" value="KRIT1_FRMD8_FERM_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13283:SF10">
        <property type="entry name" value="FERM DOMAIN-CONTAINING PROTEIN 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13283">
        <property type="entry name" value="KREV INTERACTION TRAPPED 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00373">
        <property type="entry name" value="FERM_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24522">
        <property type="entry name" value="KRIT1_FRMD8_FERM_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47031">
        <property type="entry name" value="Second domain of FERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50057">
        <property type="entry name" value="FERM_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FERM" evidence="2">
        <location>
            <begin position="1"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00039547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4008885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="44194" checksum="5639A562EE1993D0" modified="2020-12-02" version="1">MMVENLAMSSQAKDVFCIWLVSPLLQLQLKDHHQPLRMRMKWPDLLRRFTAASTEMIEKDDPILSFQRNSFFPLQDERKITDEKIIKRLFEEAKRNVLNGFYPLTRKQGEAFGAVLALTEYGKYSPQVHRVGYFRNKLSELVPYLLYKPGWHTILGRSTKATLEQNLIAQYKELSETLNMNCESSCSNGKLFLERCWDLPYYGSVFFNGQIEKQVSGLTSLLNHPDVPVRVAINRDAVHVIEPKKNVILLGLSYEEFSWDYSHTPDSEIDPECFDTFWLEFDSEEGDSTAITQLQIFSKQAVMMDAMVQSCALGPMTLSPVPQACGSVEPGSISPEKNRYKIRNRMERLSLSTYDRDGYELHRGRRNNFSITTLFKRQPSVTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HW59</accession>
    <name>A0A6S7HW59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A076963</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the CGI121/TPRKB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006083">
        <property type="protein sequence ID" value="CAB4008303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HW59"/>
    <dbReference type="OrthoDB" id="329139at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000408">
        <property type="term" value="C:EKC/KEOPS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2380.10">
        <property type="entry name" value="CGI121/TPRKB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013926">
        <property type="entry name" value="CGI121/TPRKB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036504">
        <property type="entry name" value="CGI121/TPRKB_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15840">
        <property type="entry name" value="CGI-121 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15840:SF10">
        <property type="entry name" value="EKC_KEOPS COMPLEX SUBUNIT TPRKB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08617">
        <property type="entry name" value="CGI-121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143870">
        <property type="entry name" value="PF0523-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0819">tRNA processing</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4008303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="9386" checksum="2B606576367D4704" modified="2020-12-02" version="1" fragment="single">ISDSLKTFGLNERDPAVLVVAISKGETNKMKSIIPLIKGEQVLLTKLQSITDENKIKKIYKIPESELTCGSLTDAVVTRIATKDAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYS8</accession>
    <name>A0A6S7HYS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062936</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006605">
        <property type="protein sequence ID" value="CAB4009887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYS8"/>
    <dbReference type="OrthoDB" id="6141491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="600" mass="69116" checksum="4CD40CB8A5D7F6AA" modified="2020-12-02" version="1">MYTGRTDDPVLSSCPPKRSRLTSLNTPYSTCVTMNCPMSVAEQSSEIKIGRLFGDSRQNNECVERTYNSTEFLEKYFMSGSLLSPVELLVYSLMKIQFKTSTFTKHHSISQYQGITDVVSRICGVQFEPNALRRLFPRISHNQLKSTVGKENGKVRWSYFSKQVDELIRISGEEIERIIHTDGALQEDQIVQINDQLKRICCTSKESSEKLTPENFFYQFNNNIKTRLSGSSKWIPWYNAPEREICLFSFGSSPGYAEKELRLSRTFEWKLFLKAIERDLSNCDKIRDFPRSIGTVELLVELLNILDNCKICDGCGEAEKYNALREDSGENLFRRKDGKNAVLIENDKARSTSCHLLVPQSVTNCPMCVKCRHYFRTLMSRRKSEKNAKQPEKARLDYKSKPELLDIARQSATVIKQLTTKNKRLELAVENMVELGPNSNDDLQGIFNNLYIGLQNNRDKHKNPICLWEACLQTDKFEECTVTALKELLDFICSWEFKEKYGDDLYINVKRISQDHVESYFSAQRQMCGGTQNMTGYSYGYNVNCLSNISSSKILMKKQTNVYNIAEALPVLNNSEQLPKRRSKDNEGIWDSIPWFIEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I410</accession>
    <name>A0A6S7I410_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A066257</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003580">
        <property type="protein sequence ID" value="CAB3999408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I410"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="439"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="806"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="806" mass="91879" checksum="8D9818D6EF712E24" modified="2020-12-02" version="1" fragment="single">MGKECMQIFMNLKLTVEERKDIEICIGALEAHFKPKRNVVYERYKFNLCSQNAEESVDDYVNLLRKLASSCQFGTLTDELIRDRLVLGITDRSTKLRLLKEDGLNLNKAVNMCRSSEIANIQLKSMSTTKETEEVNAVQEKGNRHKYPSSKFRSASPRVGSASNRDSHGQGYKNFKQKCYHCGRKQDHKLENCPAFGQSCNACGKQNHFAAVCRSTGNPRNTRDVRAVKQEDIPVDSSDSEESIFTIEDVSSVRSQGKQVYANMKFQDIETEFRKDLECQLDTGATCNVMSYDDLSRITQIGYPKLHSSTAKLRLFDGSMMKPLGVAHLKVERNQVTENLVFQVIETKNRPLLSAETCEKFGLIKLNIEPVNVVKESSPLLRREEILSKYKDVFEGLGHIGDASFFIDPESTPVQHAPRRVPVTLHTEVKEKLTELERKGIVVKETDPTDWISSMVVVAKPNKIRICLDPKDLNKALKRPKYQMPTPEEMLPKLSKAKVFTTLDAKDGFYQIALDEASSKQTTFWTPFGRYRYLRMPFGVNTAPEEFECKLQEKLSDLRGVEVLRDDMLVMGYGDTQEEAERNHDENLKGLLDRARKVNLKLNSKKMNLRRTEVKFMGHLISRDGLKPDPEKIAAVQHMPKPTGKQEMLSLLGFINYLAKFLPKLAEIAQPLRDLTLKDARFLWSSQHDKAFAEVKNLVSKHPVLKYYDVSEEVTIQCDASEKGLGASLLQNGQPVAFASRTLTQIERRYAQIEKECLAIVFGCQKFSQYISRRDKITIESDHKPLQSIFKKSLLEAPCRLQRMML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9G6</accession>
    <name>A0A6S7I9G6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088059</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004527">
        <property type="protein sequence ID" value="CAB4003061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9G6"/>
    <dbReference type="OrthoDB" id="6123456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1120"/>
            <end position="1191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1164"/>
            <end position="1191"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1191" mass="135627" checksum="AC5C4C406B182B17" modified="2020-12-02" version="1" fragment="single">MADIAPKTPTKIYSRKGRKPKAASVDDYCRACKCSLKNKYGSLGSFVNVFKQTNRAEFRGIVVASVCEQSGLQLKEISSLSTRICPSCSRKIKTFIDLHTFFSSEINKPGPETAISTEITTAKRLLQLTPGKSPSRKARRISAEADSVHTPIENKLRTPASRRRILSCNDKENNDNILSHLNIEDIIECQTTRVKVLILSPNGDIKVTTPQDKITIGIVKNLALKNWKAATNAFISHKDALPELLEALNRNVNREFKEFCKSNTILKGRKPDELVAFSNKLLAKEVEVYLPFWNACVRGSCGEKINCGKDAVNAIALTTATVARQRIKDLSAFHYRVSTVLCHSGVSFDGAVLLNKFGICMSPQRMINLQREMGKEHDAKLQVWKREVQKNESACMLLQEVISKQLPPLAEDDMELNRTVDMNEESLQHYKFYNKDIFNYCLSVIVPIKEQLNECQTTDDVLKAALDVLKGQEIPYYKIVGDNLDFEVHARVQSKSHNNQSIHWTHQYGIRDRVVDRTLETTERQKPVNKIQLSSLLADEATCLRLQKRWAVLVSRFVTTYLKEFRYLNNHALWHIPHKYSTEMAQKSEICSLDLEFVNANISGEMAQLMISNQDRYVPSFINDTGNKEIISPVAMHGDQLFEERARNVQWTYRVGENKFDKLEGVSTEFADWHAKVTLYKIEFDRFVKSSSAGELGTTRSSLNRTGKTTAAQGIDKKYNEYKEFNDREVEAHICAAFMEMSDMVTMESLPSYDLPDDTVPRDAKSQWLLHICEQLVKTHLFGSGEITDFVQKADDLQRALGGPFHCRQDDCHKIYNQHSRRIKHEIDVHGTKFNECTASDLDEFGYYNCAAGCGYVFSTKTAQNRHLRDKHGDFELDNEVQDDNCTLPKSDYKFNYHQSKLMFGLLLRDFNDTIREGDGEHLFDLYKLALLLYHSEKHTKYAYVVLLHLLKIVAILPEFDAHRLKWNRFYNKYGGKGNNISLDLKKEQQNKVLNTFWRALGANINKANAARVAHALEPLEAIMESVNADCRYGGRMGRRSVSNQEESVRQIVDDLVAEKVFHFTEGREGHPSFPHFDGRLVRDIDHREVHGWINGPLSYEIKVGPNQIWRRHIDQLRASSVKGNDQSDDTAEPHPELGETGQNIAPAEEIVAEPDIELATNPPVVQQQEAGRATTGSEQRYPTRSHQPPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQ60</accession>
    <name>A0A6S7IQ60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030661</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010646">
        <property type="protein sequence ID" value="CAB4019837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQ60"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018306">
        <property type="entry name" value="Phage_T5_Orf172_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10544">
        <property type="entry name" value="T5orf172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13222" checksum="605145E6FCC1A4AD" modified="2020-12-02" version="1">MAVNQVGGAAGSAFGKGCVYVMTYTVRDRRKTINYYKIGCTSREPNVRLQEIQDSEINNITLVGSVTAKKMNGAETAAQNAVKVEGLVKDPARGGATDWFKGSLTPQKVLDVVRTAVDSHNDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ITG7</accession>
    <name>A0A6S7ITG7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Protein Wnt</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A025998</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Ligand for members of the frizzled family of seven transmembrane receptors.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Secreted</location>
            <location evidence="1 8">Extracellular space</location>
            <location evidence="1 8">Extracellular matrix</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the Wnt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005134">
        <property type="protein sequence ID" value="CAB4005228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ITG7"/>
    <dbReference type="OrthoDB" id="5945655at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005125">
        <property type="term" value="F:cytokine activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005109">
        <property type="term" value="F:frizzled binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060070">
        <property type="term" value="P:canonical Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045165">
        <property type="term" value="P:cell fate commitment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2460.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005817">
        <property type="entry name" value="Wnt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043158">
        <property type="entry name" value="Wnt_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12027:SF81">
        <property type="entry name" value="WNT INHIBITOR OF DORSAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12027">
        <property type="entry name" value="WNT RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00110">
        <property type="entry name" value="wnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01349">
        <property type="entry name" value="WNTPROTEIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00097">
        <property type="entry name" value="WNT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0272">Extracellular matrix</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0964">Secreted</keyword>
    <keyword evidence="6 8" id="KW-0879">Wnt signaling pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4005228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="27207" checksum="8B1B9556015183D9" modified="2020-12-02" version="1">MYSVIVNCSLGHLENCRCQPKNRQKVRSKPSEKTGNWHWGGCSDNVAFGDLVARHFVDALEGKRGNTNDERRMFNLHNNKVGRKIVKATTKKVCKCHGSSSSCTMKTCMKKLETFNKVGQVLYEKYTTAIRVIYHNGSLRDEANKTVTKKKTKLIYYTPSPDYCHANRTLKIAGVEGRVCEAATNSDFKKCRKLCEDCGLKMKLQAVTRKVKCNCKFVWCCFVKCDECKKQVFTATCVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IW22</accession>
    <name>A0A6S7IW22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003879</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011830">
        <property type="protein sequence ID" value="CAB4022147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IW22"/>
    <dbReference type="OrthoDB" id="5987559at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030414">
        <property type="term" value="F:peptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.75.10">
        <property type="entry name" value="Elafin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036645">
        <property type="entry name" value="Elafin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008197">
        <property type="entry name" value="WAP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00095">
        <property type="entry name" value="WAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00217">
        <property type="entry name" value="WAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57256">
        <property type="entry name" value="Elafin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51390">
        <property type="entry name" value="WAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="28046" checksum="9CD4FDA1E121E6D1" modified="2020-12-02" version="1" fragment="single">MWKFVDDVSSSENLTSNSFSVTQSTLDSIDSWATYNCMKLNAKKCKELRVSFLKETPQLPSLTIDGYVVETVQSHKVLGLIIQNNLKWDEQIRSIVTKASKRLYGLRVLCRGGVPPADLTNIYFALIRSILEYCCEVWNYAIPRYLSDELERVQKRAMRIIFPGHSYDEALQLANCTRLSDRRNETCINTLQKIAKRAGQCPPPSSECGREPEDTCTSDAQCTSNQKCCQPHECRTVMRCTDIIIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J4C8</accession>
    <name>A0A6S7J4C8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PI-PLC X domain-containing At5g67130-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046200</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013533">
        <property type="protein sequence ID" value="CAB4025308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J4C8"/>
    <dbReference type="OrthoDB" id="5945141at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051057">
        <property type="entry name" value="PI-PLC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13593">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13593:SF113">
        <property type="entry name" value="SI:DKEY-266F7.9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26178">
        <property type="entry name" value="PI-PLC_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50007">
        <property type="entry name" value="PIPLC_X_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="22036" checksum="01276166EF88141C" modified="2020-12-02" version="1" fragment="single">MAQLPAFSKQDLQKPYNKVAFLVTHNSYSYGIDFGIWAHNQRFSVARQLNDGVRGLMLDLYVGWNDADVRLCHGSCIWSGSTDLLFTLIEIREFLERNTHEVVTIIFEDYLENPRILAKVFDEADISKFVLTSDYWGEVEDWPTLSEMISLGRRLVVFNNVGLTEFPYSTRNMWNFMIESRYGSVSKNPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAU7</accession>
    <name>A0A6S7JAU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A061376</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014629">
        <property type="protein sequence ID" value="CAB4027154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAU7"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0229">DNA integration</keyword>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="9" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="999"/>
            <end position="1051"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="1028"/>
            <end position="1040"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4027154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1051" mass="120209" checksum="96BB559F6278D225" modified="2020-12-02" version="1">MPSTKVQINNVHVKMIIDTGASINIIDENTFANINKYKRISLKRTRTKLFAYGSKQQLPVIGTFEATIETKKRMTVSTIHVVRGNYGSLLSYQTATELNLIKVNVNNVKVTGNDKIEQCHDSLKDKMDKKFPHLFHGIGKLHNFEAKLHIDSSVPPVAQPARRIPFYLRRKVSAALKQLEKDDIIEKVEGPTPWISPLVVIPKNDGTVRLCVDMRRANCAIQRERHPCPTVDDLIHAMNGAKVFSKLDLRSGYHQLLLAEESRYITTFVTHKGLRRYKRLNFGTNSASELFQKVIHDQIHDIPGAINISDDVIIYGKSQQEHDTALHNVCQRFTKVGLTLNNEKCQFSQTKLTFFGMVFSAEGISADPHKVSAIKNASPPSSVKDVRSFLGMATYCAKFIPNFSHLSEPLRKLTMKSAQFRWTRCEQTAFDNIKNALTSDTVMAYFDQTKPTELITDASPWGLSAILAQNSTQHDDRRIVAYVSRSLSEVERKYSQTEREALAIVWAMERLQIYLRGGKFTLYTDCKPIELILGNPKSKPPARIERWNLRIQDFDFDIMYTKGSDNTSDFLSRHPCQETDNKHEMSAEQYVNFLTMHAVPKAMTIQEIQEATKHDKTLQLLTEIIRKQAWGSIKDLPTTGEDVSELNLFAKVRDELTINEQLGIILRGTRIIMPCSLRERAIRLAHEGHQGLAKTKQLIREKIWFPRIDKDVETLIRGCIPCQANGTANHPAPLKMTELPPKPWHTVHVDFCGPFPTGEYTLVVIDAYSRFPEVEIVKSTSATSTISKLERIFATHGLPNILKSDNGPPFQSNEFKQFMTENGIKHQRITPLWPKANSEAENFMKPMEKAIRGAHIEKKNWRKELYHFLLNYRATPHTTTKFAPAELLFNREINTKLPSKIINQNTKIDQQVRANDETGKRNMKRNADKSANAKEVDIKVGDTVLVRQTKKNKWSTRFDPKPYCVTRVKGTMITATRPGHYITRNISFFKKVLQQEIQHNSEDASDEEDYSKLDNNLPDTNIEENNELAERRYPARDRRPINRYSQNIYNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JC48</accession>
    <name>A0A6S7JC48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045340</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016459">
        <property type="protein sequence ID" value="CAB4029855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JC48"/>
    <dbReference type="OrthoDB" id="10592021at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="168"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4029855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="578" mass="63815" checksum="A68371E0DC8B8C1B" modified="2020-12-02" version="1">MVLNNAIDSKEDGADIPKSKGMENTVNNPEENPSLASKMSDNSSEADFAPQTVVTWMMVSVAVGLLTIYTMIQLISNKLTQEIEHGKKTEGQVNQQHKNTTDLSNHTGGKHNATDSDNDLETPKENGNQSDNIYKGSKKTGESDGDLLHKNLTSPEDDTLNAEKSDFDTSENVEELENDGSCVERTECTECQSNGHATSIHMGAGFSGNVSIRTEASTENGDLVCCKIDSNTAENVPNCRSAATLENCNVNHIAPVTVNYLQTKCFSCNAEIPRNTEAPTHPVKQIPGSNKLLDTTELSEDLAGAKLDDEIPTENKIESPVNHPPCTIACMQTTVKSLSCVTRNDVPELSLQLHLSDWNKPNEISQSRFHAHFGLEDNLNPCQIQDNQINKAEMPFDAENIDLLHTTQSNVCTENKAATKTVSDSLSFLAGHHSPQETIDGAIFSKNSSQDEFMFPQDNATATEAQFTTTEEPETPRSRYLRYIRDDPALSKSLDSQMEILKKGCKLLEKKPAKSALRTSGSEECLKKFVHFPPDIRNIRKVHKYDSFDESCFDVEDSASNAEKQRTQSQSFDIFLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCY6</accession>
    <name>A0A6S7JCY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073474</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015584">
        <property type="protein sequence ID" value="CAB4028588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCY6"/>
    <dbReference type="OrthoDB" id="5953486at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="256"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="258"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="40324" checksum="5C42C8539AF06A48" modified="2020-12-02" version="1" fragment="single">NMSGVQEGSVVNDLVILSPQYLVDIMTSIHDVPKDRNFQRQFSDEFRKLETKGRIDSHVLEYVWKNKEVNAEILVELLSCFNILYPLSNEKEIGEQSGTEYIIPCMLKNRSDERCEKRWQKACETWKGEWDKEHHFVFDFGRFLPPALFHYLLVHIYRHSCKTKAIKPTIERQTAIFSFSNQFLFRLKLVPEHCQIWVYSRCKKGENFLDLAHILRKKVSEICQQYFKYLKFVFGPVCPRENCPGATFHVENIQRPCESSSSESEENSQSSDGSETETEDNANQKVVGATAANQNERRRHVIPINLDSFDPPYWCQEVDLSENLKDWDPALTASDEVIVTLNTRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEX3</accession>
    <name>A0A6S7JEX3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Insulin-like peptide receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017138">
        <property type="protein sequence ID" value="CAB4030786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEX3"/>
    <dbReference type="OrthoDB" id="6612654at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.220.10">
        <property type="entry name" value="Hormone Receptor, Insulin-like Growth Factor Receptor 1, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006211">
        <property type="entry name" value="Furin-like_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006212">
        <property type="entry name" value="Furin_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00757">
        <property type="entry name" value="Furin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00261">
        <property type="entry name" value="FU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Furin-like cysteine-rich" evidence="1">
        <location>
            <begin position="8"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="16682" checksum="26EEE61118D0E6AC" modified="2020-12-02" version="1" fragment="single">CDSSCDLNRDSNRGCEDGSQDKCCDKECLGGCTRADSPHHCNACQHFRIGNGSCVATCPPGLKEVEKFICKEECPDDVGLEVNGKCYKKCPVGYRENGKKCDKCDNCARVCIAPKSGIFEPPIQKIKTLSDSAKLKGCEILNGNLEIEMRNVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTD2</accession>
    <name>A0A6S7JTD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035293</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019195">
        <property type="protein sequence ID" value="CAB4033374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTD2"/>
    <dbReference type="OrthoDB" id="5985206at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13618" checksum="C692A49879E93672" modified="2020-12-02" version="1" fragment="single">IKDAVATGNGEYLSILRKQLFISLPHLASLNLQLKCLSTFCNAKFCYQKVKPTAVRMGCYSELERWCWENVEIDLFQENRNCEMKKLIKVMGANKMDKVSGRASKGSGGMTKIVETFEDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JUH9</accession>
    <name>A0A6S7JUH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box LRR-repeat 4 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010789">
        <property type="protein sequence ID" value="CAB4020112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JUH9"/>
    <dbReference type="OrthoDB" id="2153609at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019005">
        <property type="term" value="C:SCF ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031146">
        <property type="term" value="P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057207">
        <property type="entry name" value="FBXL15_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006553">
        <property type="entry name" value="Leu-rich_rpt_Cys-con_subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13318:SF152">
        <property type="entry name" value="F-BOX_LRR-REPEAT PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13318">
        <property type="entry name" value="PARTNER OF PAIRED, ISOFORM B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25372">
        <property type="entry name" value="DUF7885"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00367">
        <property type="entry name" value="LRR_CC"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="382" mass="44530" checksum="0533300CBA6877B3" modified="2020-12-02" version="1">MLLVKTLVISLICRRLRLEFNQNRCDYYTEIDAAYLHGLDSKEEYSYDDDREDAVDNLNNIFKKQITVKNFHDEITNVEQDSWNILMLPIEVINKIFSYLTFTDFGNLSRSCRSFQDYCYDPLWFKEFDLQPYWQKVDKFNLQCLSERCRSTEKLRLSWCGSSDTLSSLDFSSFLQTISGKLRCLYLSCCRFVDQNALILITKVCPQLEELDLSSCIDIPSETFDELAKLTNLKRLNLYRTQITENNFEKIARSCTELMHINLGGCFQCTNFDEAMKYLEYCPNLVSLDLWRAKSLTPNGIDSIYKNCPNLEEIDLGWCNNVTIHGWLRLLVTHCQKIKKIFLTALRTVSDDDLIAIFENCTFLEQLDILGNSNISKKSADT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K096</accession>
    <name>A0A6S7K096_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057018</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022417">
        <property type="protein sequence ID" value="CAB4036791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K096"/>
    <dbReference type="OrthoDB" id="414982at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="29125" checksum="76EEBEA4FAF94521" modified="2020-12-02" version="1">MRVSTEKLHICTEKRLSVTEQWQYSTDKFDFHRITTHLYGEGATLYGEVISEVKQYSKSPVVYRGEDAADKFLECLEEEQKHIQEKLDFVESMRIGREEEQAFQDAVNCHICGYELGADRVRDHCHLTGNDKVQLLLRKGVYPYDHMDCIERFEEPTLPPKGSFYNVLNDEQISDGDYAHATSVFKSFVCQNMGDYHDLYLMSDVLLLADVFENFRSVCLKAYNLDPCQFYTSPGLAACLKMTDVELELAFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K3I4</accession>
    <name>A0A6S7K3I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075862</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024803">
        <property type="protein sequence ID" value="CAB4038967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K3I4"/>
    <dbReference type="OrthoDB" id="2146116at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004530">
        <property type="term" value="F:deoxyribonuclease I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033125">
        <property type="entry name" value="DNASE_I_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11371">
        <property type="entry name" value="DEOXYRIBONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11371:SF33">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00918">
        <property type="entry name" value="DNASE_I_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="85" mass="9917" checksum="FD75632B50A69E2C" modified="2020-12-02" version="1" fragment="single">MGDFNAACSYVRDTEWKNIRLANDKRFWWLIDDCQDTTLKGSRCAYDRPYFTYWISFVQTTVLIITLAVYGFAPVGFTVSEQVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4C6</accession>
    <name>A0A6S7K4C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Coiled-coil domain-containing 15</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A074295</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026555">
        <property type="protein sequence ID" value="CAB4040276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="368"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="538"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="17"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="78"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="90"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="368"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="386"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="546"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="586"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="610"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4040276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="610" mass="70325" checksum="7857245EE5DC5FE1" modified="2020-12-02" version="1" fragment="single">CEELCPRSKEPCPQCEEPSTQSEETFPQSEEPCPQSEEPCPQGEEPCTQSEEPDLQCQEHCPQSEDPFPKSGNPCPQSEEHCPQKKEPCPQSNEHSSQNEEPCPQSEVPCSPSEKPCPQCEKPCPQCEQPCPQSEEPCPQNKEPCPQSEEPCPQNEKPCPQREKLCPQSEEPCPQRVRNLVLRVKNLVHRIKNLVLRVKNLALKLRNLVLREKNLVLRVRNLVLRGVSNLDLRVKNLVLSGRNLVLRVRNLVLREKNLPLMVRNLVLRLKNIVLRVKNRVLRVKNLVLRVKNHVLRVKNFVLTVKNLDLRVKNLVLRMKNLVIRVKNLLFRMKNLVLKMSYLVLRVTNLVLRLSNLVLRVRYVPCPQSQKPCPQSEEPCPPCEKPCPQREEPRPQREEPRPQIEEPCPQREEPCPRSEEACPQGEEPCPQWEEPCPQVKNLVLRVRNLVLRVKNLVLGVRNIVLTVKNVHLRVRNLVNRKRNIFLKVSNLVLSARNLVLREKNLVLREKNLVLRLKNLVLREKNLVPXXXXXXXXKEPCPQREEPCPQGEEPCPQNEEPCPQSEKPCPQSEEFCPQSEEPCPQGKEPCPQWEEPCPQSEKPCPQSEKSSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4M6</accession>
    <name>A0A6S7K4M6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078139</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026721">
        <property type="protein sequence ID" value="CAB4040386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4M6"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="46278" checksum="D4C98EE0ABE4173B" modified="2020-12-02" version="1">MSLKTSKVPQKWKSANLLPLPKESPLNSCNQLRPISLTDIIMRLFEKCVYKSEIEPITRNNIGPDQFAYKKGHNSTMALIKSQHQWLEWLDKNANYVRVLSFDFSKAFDSVPHDLLFEKVKKLPINPYVVNWLISFLENRIQRVMVDGMVTEYLYINRGVPQGTVLGPVLFSIMVDDIKTADPSNALVKFADDLTLGVPGNESGDTSRSEAACLQDWAEENRMPLNLEKTYEMVVRRHTSVVLPELIPSIKRKTWLKLLGVTLQDNPCNWDLHFEEMLKKASGRMYIMRVCKYYGLSIKQLDLLFDSLIMSIFTFAIELWGCAYDGKYLNQIDKFIKRAHKNGYISKRTHIKEIRDKRDKKLWNKITSTEDNALLELLPEKRNLTTCDGQITEYTVNNKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCL6</accession>
    <name>A0A6S7KCL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020157</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013523">
        <property type="protein sequence ID" value="CAB4025292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCL6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="34135" checksum="95E1008EED8CBC71" modified="2020-12-02" version="1" fragment="single">VADQSISLDELKSLCKELKILQPVQKVVSSFLGWKWETLSTKLGEKVNVDQLRKFAGKDETNLIFRQYLDYLRESLAGETGQEFSQLPLIVSPNIFLMDQGTKGIVHMCTDPLGLQQGSYGQEKGFSLALYKLPKPLQEHDMTTSAIGLLDLMDRLNFGVRHIFNIAILGDIHQLMEIQKWIGEHRGMCELGFTCVKGVKSSGVLGMVKAVEGFLVYHAALGQRVLQDHFNFDADVNNFMVVNAEQKELEVCRRLVQLFSRPGDWILDVNIPEVAGVAAAIKARRKKNMKKQKQCYENCANCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMM1</accession>
    <name>A0A6S7KMM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A075430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016135">
        <property type="protein sequence ID" value="CAB4029383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMM1"/>
    <dbReference type="OrthoDB" id="10637350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="61"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="118"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4029383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="25316" checksum="C236C3108ED10DB8" modified="2020-12-02" version="1">MEFKGPKTYKPSFAGQPSPSREEMWKGELGFEEDDSTDSLGTSDEEPEVDQFSNNVTMIELQSLQVEIQKKDKQREELLLKLKVLSDKTASYRARLNKSEQNKKSQMKIMKKTHEVFIEQKDKLITDLQKILSEHEKTLAAQGGKGKKKGKGAKDLPGINRLVESITQLHEEKAKLDESMLVVQSELEASREEAMDNASKYRNQISDLQIEIKRLKSSSEQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LPV4</accession>
    <name>A0A6S7LPV4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042486</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022666">
        <property type="protein sequence ID" value="CAB4037039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LPV4"/>
    <dbReference type="OrthoDB" id="6008609at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="224"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="458" mass="52394" checksum="FD2FB6DF6CAC4E06" modified="2020-12-02" version="1" fragment="single">TYLDEGRFTWRHDSVLNFLASTLTAVKNSTLYADIPGFMNPSVITGDHLRPDLLLVTENRCLYILELTVGYESNLLVNANRKRQKYRDLINEQEADYDKVKFVNLSLSTLGVFGRSSENFDSMLSSLKCDANNVLLPQNKFGLNIILLSTKFIQCQTVSRSALKYSPNVDINNLWAVTSTNKNVQYDIYKDTKDVLKAVRKENEQRLQNHLISQGSFFSSIMNHSTSTFNSLWSSVQSKLPKNIFNFTIRYINNTLPTRKNLSKWGLSSTSDCSFCSSPETLLHVIAGCKTYLDEGRFTWRHDSVLNFLASTLTAVKNSTIYADIPGFMNPSVITGDRLRPDLLLVTENRCLYILELTVGYESNLLVNANRKRQKYRDLINEQEADYDKVKFVNLSLSTLGVFGRSCENFDGMLSSLKCDAKYSKYIKKQIVNICIRTSYYVFCKRNKVWDNPKLMLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6T6</accession>
    <name>A0A7D9D6T6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000056">
        <property type="protein sequence ID" value="CAB3977591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6T6"/>
    <dbReference type="OrthoDB" id="5989182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="14658" checksum="5483121475AFFC47" modified="2020-12-02" version="1">MEADHDNSESESDESDEESDCLLLLLRFCHLCKADNPLVETREVRSKAVVTTIICNPKCPQNTTMWHSQPMMPGTKISTGNVLVCMATLLGGGSFSKVTQIFLHMGLGCVSLSTYFGYEKVCKLCANTIFSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGM0</accession>
    <name>A0A7D9DGM0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000770">
        <property type="protein sequence ID" value="CAB3984672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGM0"/>
    <dbReference type="OrthoDB" id="998159at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="14947" checksum="BF281761933B6E4F" modified="2020-12-02" version="1" fragment="single">GLLTRILNSSLEQQCVPTLWKLANLATIPKELPLSSCDQLLRPISISLTNIIMTLFEKLLFKQEISMQSNFIIGKDQFAYKTGSNTTTALIKCQHQWLKWLDDEEVDSVRVISFDFSKAFGTVPHDIAGCAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH02</accession>
    <name>A0A7D9DH02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Mitochondrial inner membrane OXA1L</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A016632</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Mitochondrion inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the OXA1/ALB3/YidC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000806">
        <property type="protein sequence ID" value="CAB3984952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH02"/>
    <dbReference type="OrthoDB" id="2148490at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032977">
        <property type="term" value="F:membrane insertase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032979">
        <property type="term" value="P:protein insertion into mitochondrial inner membrane from matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd20069">
        <property type="entry name" value="5TM_Oxa1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001708">
        <property type="entry name" value="YidC/ALB3/OXA1/COX18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028055">
        <property type="entry name" value="YidC/Oxa/ALB_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03592">
        <property type="entry name" value="yidC_oxa1_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12428:SF66">
        <property type="entry name" value="MITOCHONDRIAL INNER MEMBRANE PROTEIN OXA1L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12428">
        <property type="entry name" value="OXA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02096">
        <property type="entry name" value="60KD_IMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="4" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="3 9 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="118"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="277"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="Membrane insertase YidC/Oxa/ALB C-terminal" evidence="12">
        <location>
            <begin position="120"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="380"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="380"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="10">
        <location>
            <begin position="395"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="407"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3984952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="416" mass="46832" checksum="0AD0BC02D31979B5" modified="2020-12-02" version="1">MAARLLNFNKYFRGSPFITTRLLKCEGRRKFSSMECHSNLYTNFNRSQPGIPWGLTTARFMSSSEEFKMGSILGEPEVISNIAQQISEPSFESLGLGGNSPIGLVQQVMENIHVGIGLPWWATIVATTIVFRTLMMPLVIRGQANAAKLNNIKPELDILTQQMREVANQQDNTKKAETSRDLQNLFSKHNCHPFKSLIIPVVQIPLFLSFFVGIRRMANLPVESMKTGGLLWFPDLTIADPYFLLPILCSASMLLTIEAGAEAGVSNPQFKNVKQVFRVMAILMIPLTAKFATGLFTYWMTSNTFSLGQMLFLRIPAVRTFFGIPKMVDHSDKKTESGGFIENLKSGYKNAQNLAVIKHNEQQKQKAFDLASKEPLKQTYESNPLAGTNEQLFKKAARTSKKKRRKNNQEKFTNDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKH7</accession>
    <name>A0A7D9DKH7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026034</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001185">
        <property type="protein sequence ID" value="CAB3987509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKH7"/>
    <dbReference type="OrthoDB" id="6129079at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18708" checksum="4DBD5453C97D6F39" modified="2020-12-02" version="1">MNMNRQHVTLLVILNLSAAFDTVGHHIMLERPKSSFGIQDQVQKWFISYLSNRSQILESHLPDAHAFADDNQLYVSFQPDSMSGQLSAVTVMENCIDDIKTWMLNDKLKLNDASSEAKDLGFWLASQMKCDTNVNSSSYFILMIESLHQISPCYDFLGVDWGLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DRL2</accession>
    <name>A0A7D9DRL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A068293</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002029">
        <property type="protein sequence ID" value="CAB3992349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DRL2"/>
    <dbReference type="OrthoDB" id="6020750at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12726" checksum="2CDE9CCFA9796575" modified="2020-12-02" version="1">MELRESHRVEKWNGNETVSLGDIVVVHEESRPRGLWRMEIRKGRSTTIKRPVQRLYPLEIRSTARESELPVEAKEDDKPEVTRTRPRRAVAIEADNRRKRWIEDLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3D8</accession>
    <name>A0A7D9E3D8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070940</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003468">
        <property type="protein sequence ID" value="CAB3998909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3D8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="91"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18185" checksum="4FC1B8CA834ABF88" modified="2020-12-02" version="1">MFHVSGAMFAISANYLISSIILRHPKEFAKIMDPKSTQAQIFKNTGSPKDIKNYILSTFAEDHSGISSLSRKASKTVTKALLDSDNDNDSESTTSASSSSSSSSDIVEPKLPKKQQPPSKKKDSSPSISNENVQQPPKSKRPKTKQTVVEIAEDMEQDIVQTNLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E4D2</accession>
    <name>A0A7D9E4D2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003336">
        <property type="protein sequence ID" value="CAB3998373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E4D2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="73" mass="8500" checksum="9DF2954A6B306242" modified="2020-12-02" version="1" fragment="single">NTEDDLQGLAFTIELTHLADGGSTYVLVDRMANCTTRSISTERNISSNRDILPYFTRKILYELQYKNFCLRYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EC33</accession>
    <name>A0A7D9EC33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A015187</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005258">
        <property type="protein sequence ID" value="CAB4005645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EC33"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4005645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="12648" checksum="931ABC5102B0AC16" modified="2020-12-02" version="1">MGYLKKICVGAAAVVSSALLGYFLYKNYFQSKEDIDEDDSFKTESNSAEMNETQNMNSAEDVTEAENGNSTKVVNDAGASNTSQCSSQHQSKNKGKKPPSKSRTGYMGLRKGFLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENX7</accession>
    <name>A0A7D9ENX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077387</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007294">
        <property type="protein sequence ID" value="CAB4011867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENX7"/>
    <dbReference type="OrthoDB" id="1217891at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13706" checksum="BC58C651A4327DF7" modified="2020-12-02" version="1" fragment="single">MHSNETECSDVVFEHRDRLHNVEFENITLSEEEILGVMMNLDHNKVHGPDNKIAPSSLCNKSLRIDVVPDDWKLANVVPVYKRREKAEIDPGQNGFLPKKSCITQLIEVLDHIGRYLDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EW51</accession>
    <name>A0A7D9EW51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067238</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010604">
        <property type="protein sequence ID" value="CAB4019733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EW51"/>
    <dbReference type="OrthoDB" id="5986853at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="584"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="584" mass="64700" checksum="2700EC39218C956A" modified="2020-12-02" version="1" fragment="single">MFLDNAHSMAMIVHSMRVIKVAVEHVNPSQAPVIALDQPLFALAKQIQWKIPEFGEDKFVVMMGGLHIKMASFKMLGKLLSGSGWPEVMCNAGVATQGIAESFLSASHVTRTRRAHQGEDSALDVCHGSSQLFQVALSSLSGYVSPSVSCFEEMGNPFQDESENLMAIYTRDIMGDEVVKTIRNASKIGEEQFKSFVEGRFIDGSKPVTDTLKKNNLPTLNTLTKKAVSKDKAKVQNQPWPPSLSELGQLRGVKADLIKCLPNTTPQSPTQPEADIVILDGAVIVQMLQPRTARTFIEYATTVFAPYVLKHLEMARRVDLVWDVYQDDSLKKSLREKRGTGQRRKVLESTRIPHDWKSFLRVNENKEELFKLLATKVVSLAVPEVLAVSIVNTLAIDEMWITHGSGKNVHNIPVHAVAASLGPAKSTAMPLFHALTGCDTVSYFRGRGKKTAWDVWGIFPELTPVLSALKTSPEDITEESMAVLERFVVLLYDRTSSLAKVNEARQQLFSKRSRELDTSASKPIRLGMAAPRSTLVSILDNPSHKPRTLVTNSSVVDVKFHVSAGVAKNIRYEHIRHMTLPIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZW5</accession>
    <name>A0A7D9EZW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: protein NLRC3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048291</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010574">
        <property type="protein sequence ID" value="CAB4019669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZW5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01670">
        <property type="entry name" value="Death"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.533.10">
        <property type="entry name" value="Death Domain, Fas"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011029">
        <property type="entry name" value="DEATH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000488">
        <property type="entry name" value="Death_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00531">
        <property type="entry name" value="Death"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47986">
        <property type="entry name" value="DEATH domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50017">
        <property type="entry name" value="DEATH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="13"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="26084" checksum="797A96895BB7412E" modified="2020-12-02" version="1">MVEDSSNFRRPNETSSEASSSEITDFDDEVCERHVPWLARHLSKDVEKVAMLLEVDSVEIEAIKEGEPQPERRNIKILNSWRNAEMKLGKKPTWEKICLCLEDETVGRCDVIRALLKEDELDDRVLVWLAPRIAASFRNYARVLGVPECEIDMSNQNFEGVGRSCMDVLQRWRRRTRYPKVEDLIQALEHDIINRPDLAEEMKEKFCNHEVKDEVLSQLDNLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H7C3</accession>
    <name>A0A7D9H7C3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080203</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000003">
        <property type="protein sequence ID" value="CAB3976597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H7C3"/>
    <dbReference type="OrthoDB" id="19657at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017171">
        <property type="term" value="F:serine hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46331">
        <property type="entry name" value="VALACYCLOVIR HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46331:SF2">
        <property type="entry name" value="VALACYCLOVIR HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="54"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="282" mass="31988" checksum="7A73705E066561EB" modified="2020-12-02" version="1">MAFPTAFSKILSSFARSALVPRTLTRFNMHSESGKRLVNGVKLYYEKVGQGSKVLFCLPGAMGSTRTDFGPQLDQLKDNFTVISFDPRGYGKSIPPKRDFPLDFYHRDADDAVGLMEQLGYSKYSVLGWSDGGIFGLILAGKYPNVVDRLVVWGCNASVTQKDLDLYEAIRDVSKWNPKMRKPLEDIYGDEVQELWGGWIDGLVSIFKECDGNLCQELLPNITCPTLIIHGEKDPLVPTFHPQYIHKNLKDSILHLMPEGRHNLHLRYAEEFNKYVTDFCKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HA14</accession>
    <name>A0A7D9HA14_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Exocyst complex component Sec8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A034482</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the SEC8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000014">
        <property type="protein sequence ID" value="CAB3976804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HA14"/>
    <dbReference type="OrthoDB" id="272977at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000145">
        <property type="term" value="C:exocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032584">
        <property type="term" value="C:growth cone membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045202">
        <property type="term" value="C:synapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007268">
        <property type="term" value="P:chemical synaptic transmission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006893">
        <property type="term" value="P:Golgi to plasma membrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006612">
        <property type="term" value="P:protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006904">
        <property type="term" value="P:vesicle docking involved in exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090522">
        <property type="term" value="P:vesicle tethering involved in exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039682">
        <property type="entry name" value="Sec8/EXOC4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007191">
        <property type="entry name" value="Sec8_exocyst_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048630">
        <property type="entry name" value="Sec8_M"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14146">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14146:SF0">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20652">
        <property type="entry name" value="Sec8_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04048">
        <property type="entry name" value="Sec8_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 5" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="4 5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Exocyst complex component Sec8 N-terminal" evidence="8">
        <location>
            <begin position="48"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="Exocyst complex component Sec8 middle helical bundle" evidence="9">
        <location>
            <begin position="276"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="374"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="37"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="382"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="408"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU367079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF20652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3976804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1024" mass="117148" checksum="8B52978777DE22A9" modified="2020-12-02" version="1">MEFAMSKDETVKSPALLRVVKSLTSSGENKSERDLEKKRLEYEFNEQDQILNKLVEERHVSLNSTLQSFTGIASRIKDSRDKVKNLKETLNNCKNLLHCKRDDLRKHWIESMELNDVLFLLDKIDKARNVPEELQKYTESKYYLHATKLLVQTVEVLDKNLKGVEALRELRVDLQTRKERMHERLLEELNRHLYLESSKTTQLKSLGLKGAFSPKRDDKDQSILSVESIPVSESPGGEFKRTHRITASRNQIMEETLAAENSEDKEELINEDLHINPESDSAHFMTILVQCLALLEKVPEATEELKNCMKREMTGIVHRATTEVKERIGNREEMKSKLNVLLKLLEVIFEKFKGVARAHEVVLKALQRVTAEQEAKTMAVEELSESTDDSDEEDDSETETNETSSPKETNETTSPKESKEVAESTKLYTMEDVWSEIQFTIQVLLSDYLDIQNVQSPHHPTPASFSESDMDISSFFSLKKKGAAPPRKIPLFRFEGSSSSLSMNTYIREKRQEAASPFSMSEEDPYGSQMYKTRPELLCPPSMKNITVIFRPVMKFVVTVESSINYEPKMRCILYQFITDYVKDVYVGEKQYEINQQIDSVTKGNDGFKTLVSASVTKKLEADRPLLKSTVLVEEMIQDLKGLMQSLPLYASKFMEMICAILNNYKETCYAAYKTIVKVTQSNSVSPIISATWAKDDDISRLLRSLPNWTNLHGHTKHRKKEIEENSEAIRMRNERESELLINNLGETVIKKNEVILNSADLKTLANLQESTEWLTGRIKSFASSLSAETTGINVLSPGSHEKLKVQDIPPISEDMLRILNNLGQDFQNLAEMCLLVLHLEIRCHCFYYLLQALRQTSYVCSVESVDADTLVIQMNKDLIALEDIVATSLAPHKFKYMFEGLGHMMSSLIISAAPNIKKINSNGVKKMSRNIFAIQQNLLNITQSREPDLDKARLYYDLLYKIPGDFLVVLVEQGAKYTDIEYENILNLYARSQAVIDKEANKQRLAKLKEILKELRINQQTTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAP4</accession>
    <name>A0A7D9HAP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036402</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000038">
        <property type="protein sequence ID" value="CAB3977244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAP4"/>
    <dbReference type="OrthoDB" id="8862904at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10773:SF19">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10773">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="677" mass="77351" checksum="94973D81F9C4136B" modified="2020-12-02" version="1">MATTWRETETLDFLDVLSEITRDQVDREEVDSGNIVDEQTQQSSDSPEISEDDSAANDPDYICEPDQLPEPDDLSDDLPSVTELTELTHQPHNLISGDNQDDSVDDPAAVNKKPSKRQKVSKPDTWQQNLPKAQRLKGKSYTNLQGKEQKERVIGPPCSSGCCQKSSLRHCQSFTEEQRLWIFNKFWSMNTWAKRRLYIQTLVEKVNVKQRKAEHAGPSRRSSSFQYKLKLSDGSAKLVCKRFFASTFGMPARTIASWLKEPTQPLKKKSPKSGKTVPIAESDQTFLNEWLGKLPTVPSHYCRNTPSYQNKKFLEPDVTISGLHTEYKKAAAAAGKRVINVKTFNETFHNLNYSVFRPRKDQCDTCVGAKYGNRSEADYLAHIKNKDAARAEKTKDKENASTKKSVWTLDTQAVLICPKANASALYYKTKLQVHNLSFYNLQSHEGYCYVWDETEGNLSAEMFTHIQYQHFDDFLATHSEIKELTVWSDGCCYQNRNVTLGNAYLDLARKRGVKIIQKFLVVGHTQMEVDSMHAVIERKIPANVYTPRDYMVIMECARSRPSPYVVKSVHHNDVLQLDGSYFGSIRPGKKTGDPTVNQLRAIEYNPDATIRAKLSFSDDSEWIDLPQRIHIPDVPLTWIPVFQSRIPISSRKYNDLQSMKCVLPQWAHDFYNMLPHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC56</accession>
    <name>A0A7D9HC56_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ras family-domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A033512</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000239">
        <property type="protein sequence ID" value="CAB3979885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC56"/>
    <dbReference type="OrthoDB" id="5989797at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24073">
        <property type="entry name" value="DRAB5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="27748" checksum="AC0C935BC9BCFBFE" modified="2020-12-02" version="1">MAENQDAVELQTIKGPVAHYKRPIRSYKVSFAGMYGVGKTSLLRRILKEGFSDIKPPSSVGIVRRIDTRKHEEILHEHETVIPFVFWDTADMERYDLYDEIVPYSCHRGSHFILLVYSAVDEESFYELLRIAEDLERYGRVPPAKVILVRNKIDLPIGEDGVLEEKEKEFLRRMNLKENFLANFWTSAKTNEGVKDLLRELGKHSLKMFESRRESEDHNVRLDIDANKQENQGFSCSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HDU9</accession>
    <name>A0A7D9HDU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055780</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000447">
        <property type="protein sequence ID" value="CAB3981944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HDU9"/>
    <dbReference type="OrthoDB" id="6129029at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="439" mass="50827" checksum="62EC64DF674DB0F6" modified="2020-12-02" version="1">MDSTSLCLGTVIVAGNDEGSMTYLKDPVAGSMIVNIKTNNGKEETRLIATSCLLITSGTRACKNCTYAAKLWYNRETKRNVKGGSLHKKCNVRFLARGGLEEKVCKQRKEIRSDSVREKRAMDEMIEFSESDCVDLRKIVDNVDSKDVPEDMALLWEMQRKQLASKSPAGYRWHPKYYKNCVSQQPAWNTETIEWCRKEAERKNLKSADYWGGLVVDEMKIQEDLQMTVQGGKHQLVGMVSLGEFYQDMKRVETGTSDIQIATHLLQFIFLSDSGFRFPLAHFPTAQCPPSALYFQFWEGVLQMKRTGFSPIDLHFIGYNMWTEDPMVFQMDCKHNFKKIRNNIEKSSPSGTTRCLTKDGKNIFWSHWKEAYLWDQRCNSRHCHERLKEDHFELTPSSRMKNSLAEDVLDKRMFNLMKAYKEHLMMTNDEDANRLDESI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HFU8</accession>
    <name>A0A7D9HFU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A087484</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000322">
        <property type="protein sequence ID" value="CAB3980772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HFU8"/>
    <dbReference type="OrthoDB" id="6134515at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22758">
        <property type="entry name" value="OTU_232R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="2">
        <location>
            <begin position="234"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="555"/>
            <end position="685"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3980772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="821" mass="95165" checksum="8C1A8A6BBF8ED8E6" modified="2020-12-02" version="1">MRDNPERFIESNTEISWLEYLNDMSMQGTWAGAMIIQAVADQLKLKITIAETREGFSEYNIIQPVEPTQQLTNIYLGHIDEYHYVSTLPCSSISSLCRNELNSTRQLNTSRNVEKNINPSISNRIGNEPVSPEQLIQISQSKQMKTQYMRQYMKRKRVNTTQSPESKEKKRQYMKEYRKRKREVLFIFAHVVTNYGPAASLKESNPDAQKRLLNRKSLNNVEWLCRTCNKHLKNNKVPPCAAINGMQFPEKPSFFYLNELECRLLAPRLAFQKLMQARRGRQLKINGNIVNVPADVANTVNMLPRLPNETSTIKVNLKRKLQYKSSALSLNVRPNKVAEAGRWLVNNGNLYKDEGITFNDTWLEDNSNNLVFDDNCDDQISEGSENVDCNADKTQQILTCDEDNNWSEDEAEMPAGITDTMLTSPDFLTDNERQHILNLAPGEGNRPMSIFRDKYSEELAYPGIFLGQKRPDNTKRLTKVHYSEICKSELRRSDRRAAMCVENLFFKTKKLQMKILLGQSQVALRKCQQNSHTITTGQLKQQGALDNMIHHDQGFKFLRAVRGSPPYFEKAKKDIFAMIRQLGPASLFCSFSSAETQWVHLLRILGKLLDNKEYTDNELENLNWEEKCRLIQNDPVTCARHFDYQVQKFLQNFLLTNSAPLGKIADWFYRVEYQQRGSPHIHMLIWLESAPTFGEDSDCDVVLFIDKIITCEKPTENAELLALVNRQVHRHSHTCRKKSKSVCRFNYPQPPMRSTNILYPLDVDMDDNEQHEDTYKFIKKHLNDMKEGEDITFDQLLVKLKLTEQNYLLAIRSTLKAQLYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HK59</accession>
    <name>A0A7D9HK59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086579</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000738">
        <property type="protein sequence ID" value="CAB3984423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HK59"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6461" checksum="25057906CE609B62" modified="2020-12-02" version="1" fragment="single">MKGILLALVILQLVLLSEGWLPKRPQRCPRNPKLEAWKKSVKQILASEGVREKRGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HLR4</accession>
    <name>A0A7D9HLR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000764">
        <property type="protein sequence ID" value="CAB3984628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HLR4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17429" checksum="3B02D1B6DF3C0700" modified="2020-12-02" version="1">MERVDNLQMLRNSEEKIGQENSKGTRRESRNCRKVYLVGGFVLLAGGILCVLVGLYASKLNRNVRKRNTQCSEAPLNLCEYSDEAKRVKLPEFLNKVHEVYYKLYPETHAWEINISDEEATNNVRERHCKFSLFPTIASDHLNDGIPAEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUC6</accession>
    <name>A0A7D9HUC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Netrin receptor DCC-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023844</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002271">
        <property type="protein sequence ID" value="CAB3993503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUC6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="551" mass="62265" checksum="08AB1010A2F39BDA" modified="2020-12-02" version="1">MNKIEVMASIHIFVGASILLVAVCKRSVSSEISSLTIEPRSPICLKKGENIPITIMLHSNLSSVNFTRTFSNLSLLWYRNGIQLPNATIIHYTNNSIVSRFVAKYPGLFTCVLIGPTASQNLANRSVSVGMRPNPVANLVATPKFISDEDTFRYVVVSWLRQSIEYVYRVFFKIDLLGCFSFPCVEDNIEPTCIATKCTARIDTEGHDLSDLAFYIVTRQGACESRSRVWNFNLTLSSCDVLPPKTLFYVPYPPTKLTIETSYRSVILRWQDIVSWSLPSVSLTYTCSKSSYTIKSKKVDIRVIFLSDKHIRGYAPYGKCTFCLSIQEYHCGQFSEKLCKTTRLREEPPSEAPNITCTTDTCPTSYDDQFRNLTVTWELPAEKYWGGVLREIKLRYTAAESNSTWQEIVLTNLSSKSVAIIGLNKTLHYSVYLQACNTEGCSGNSKQLQIYGIRARPLYSIYSSSNYNTVWYSIGGAMGFIIVMVVCIIMIPKLFFKQRTELEPLSETDIPNYDEADDKIVYDHIDDEQCEQLYDEGDPRGDETPPVNGQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWE9</accession>
    <name>A0A7D9HWE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A061321</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002664">
        <property type="protein sequence ID" value="CAB3995439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWE9"/>
    <dbReference type="OrthoDB" id="9971251at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000005">
        <property type="entry name" value="Procollagen C-endopeptidase enhancer 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251:SF41">
        <property type="entry name" value="DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251">
        <property type="entry name" value="OVOCHYMASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3995439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="277" mass="31301" checksum="18CCE9F1AB10F49A" modified="2020-12-02" version="1" fragment="single">TCQSTTNLRSSSGTIRGPGYPGNYPNNAVYCWRIYVPTNYAVKLNINTLNMEVCTGCNCDSIEVFDGYSELSSRIGKICSKSLFAKSSGQYLFVKFTSDATGTGTAFTASYYRLAKAKSLGKTADKSDKQMPCLSTKGKRVIIETRNLKTKPFTPKDDRITTGKAWDDWLEGIEREFRYFKISDPTDKKDALIIYGGKEVATLEKSLPNPATQQDEYKKLKTKLNSYFTPKKNKHHARYLFLKLRLNHGQTIAAYATRLRETTANSKATRTNEYWNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXK7</accession>
    <name>A0A7D9HXK7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">N-lysine methyltransferase SETD8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060833</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002037">
        <property type="protein sequence ID" value="CAB3992383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXK7"/>
    <dbReference type="OrthoDB" id="5989306at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005700">
        <property type="term" value="C:polytene chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042799">
        <property type="term" value="F:histone H4K20 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043516">
        <property type="term" value="P:regulation of DNA damage response, signal transduction by p53 class mediator"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.270.10">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051760">
        <property type="entry name" value="KMT5A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001214">
        <property type="entry name" value="SET_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046341">
        <property type="entry name" value="SET_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46167">
        <property type="entry name" value="N-LYSINE METHYLTRANSFERASE KMT5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46167:SF1">
        <property type="entry name" value="N-LYSINE METHYLTRANSFERASE KMT5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00856">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82199">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50280">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="69" mass="7954" checksum="A6CA6CCF8EED2CA8" modified="2020-12-02" version="1" fragment="single">VDATFASGLGRLVNDSEHKMANCLIKKIEINGQPRLAIYAKRDLNMGEELRYDYGVKDLPWRKRKGNLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HYB4</accession>
    <name>A0A7D9HYB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Arf-GAP with SH3 domain, ANK repeat and PH domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A022850</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002207">
        <property type="protein sequence ID" value="CAB3993192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HYB4"/>
    <dbReference type="OrthoDB" id="5980717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08834">
        <property type="entry name" value="ArfGap_ASAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.220.150:FF:000009">
        <property type="entry name" value="stromal membrane-associated protein 1 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.220.150">
        <property type="entry name" value="Arf GTPase activating protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.60">
        <property type="entry name" value="Arfaptin homology (AH) domain/BAR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027267">
        <property type="entry name" value="AH/BAR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037278">
        <property type="entry name" value="ARFGAP/RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001164">
        <property type="entry name" value="ArfGAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038508">
        <property type="entry name" value="ArfGAP_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043593">
        <property type="entry name" value="ASAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004148">
        <property type="entry name" value="BAR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45854:SF3">
        <property type="entry name" value="ARFGAP WITH SH3 DOMAIN, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45854">
        <property type="entry name" value="ASAP FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01412">
        <property type="entry name" value="ArfGap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16746">
        <property type="entry name" value="BAR_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00405">
        <property type="entry name" value="REVINTRACTNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00105">
        <property type="entry name" value="ArfGap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57863">
        <property type="entry name" value="ArfGap/RecO-like zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103657">
        <property type="entry name" value="BAR/IMD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50115">
        <property type="entry name" value="ARFGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0343">GTPase activation</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3993192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="749" mass="84584" checksum="1F2BAE52EECD944D" modified="2020-12-02" version="1" fragment="single">DLRKPFDKASKDYDAKYSKLEKEKKQQAKESGLTRTEIVPQEIADEMEKERRYFQLHMCEYLIKVSEVKIKKGVDLAQHFVDYYHAQNTYFVECSESVDCIRSYTETLVGELKQLRIQQENEKKNLMMLRDEVKETLQIDREKSLERAGYTLHGQQGDINHGTMIKGYLLKRSEGVRKVWQKRYCVVNNGQLTLAYSASSAPNHTLNLLTCQVKGSVEKEGKKSPIFILVTHNRNYLFQAEDHAEMERWMSVLSNSRKEALEKAFGEHGNGLQKDNSTDEANDLRQRIVRVVQSLPGNDICADCNTPEPTWLSTNLGVLTCIECSGIHREMGVHVSRVRSLTLDNLGTAELLIAKAIGNGGFNEIMEATLDDDFVNRSQAVKCKEERKEFIRAKYINHQYAQKLEESPSALSKGLAKAVHKKDILAVLQVFAEGVDLSAPLHDQLHEPAPALGTVLVICPLDSIVKNQLMEAESYGLKAVSLSSSEMFEQINGAPDVVFASAEAVSQKAFRESLKRTRNIHAIVIDKSHTVETWTGRKNKKDKVFRSAYGELSILRSFCKKEGCYCVASLKPFVPNVVTVEPLQDCCSNCCLNCKSSDSCSGSNLPFEKDLVSDQEAPQPLRKRDTSDQQRNDICDALMELKDKFKHHCPPEVHGFLEELVLELVNNCSTIFTVSDILKFPVFSVRTALQILEVFQNIIDDTEEEDNTSEIFSTPDIHVCEGLNFDFTDMGNEICAAECLGDEEIENLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICD4</accession>
    <name>A0A7D9ICD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A068318</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004444">
        <property type="protein sequence ID" value="CAB4002772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICD4"/>
    <dbReference type="OrthoDB" id="6627079at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4002772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="16028" checksum="0F7A84AA5AD0A3C2" modified="2020-12-02" version="1">MKAVAENQLNLPPPASIQGIVSFTIYYYIVGDDAFLMSKHLMKLYPHRHLDKEKRVFNYRLSRARRVVENAFASQLVHLVTLINCWSVRVYRIQNLLLAFVTVKLDLVHCSCVEACENYTVMLCGLVASDLYFAGTKIIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDA2</accession>
    <name>A0A7D9IDA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070868</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004378">
        <property type="protein sequence ID" value="CAB4002520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDA2"/>
    <dbReference type="OrthoDB" id="6760781at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18935" checksum="FF7434E14354D81D" modified="2020-12-02" version="1" fragment="single">MRPETAQHIIQVCPRTSGPRMRRHDRVVQFVSAAAELAGYKVLVEPRIVGRTLGVRKLDLVLWNESRAYVADVTVTSDQVGGVKAHRDKVAYYDQPEIREWVERFTGLSDISFSAVAANWRGVVSHLSADFLKSVLKLSNWDISLLGLRICEETYHIHQYFGRRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IFN6</accession>
    <name>A0A7D9IFN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peroxisomal sarcosine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A089652</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MSOX/MTOX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004976">
        <property type="protein sequence ID" value="CAB4004698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IFN6"/>
    <dbReference type="OrthoDB" id="424974at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050031">
        <property type="term" value="F:L-pipecolate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033514">
        <property type="term" value="P:L-lysine catabolic process to acetyl-CoA via L-pipecolate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.9.10">
        <property type="entry name" value="D-Amino Acid Oxidase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045170">
        <property type="entry name" value="MTOX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10961">
        <property type="entry name" value="PEROXISOMAL SARCOSINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10961:SF46">
        <property type="entry name" value="PEROXISOMAL SARCOSINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="6">
        <location>
            <begin position="9"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4004698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13381" checksum="EA8E4634486E49A8" modified="2020-12-02" version="1" fragment="single">VCFGEGPDVDPDSRDDVDVMWTVDVAAEFVEQHLIGVENRPSIVEYCIYTPTPDGTCILDKHPRFKNIIVGVGFSGYGFKLAPVYGKILCELAFDLVCSYDLRSFRLDRFENQLPKSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHD1</accession>
    <name>A0A7D9IHD1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001266</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005256">
        <property type="protein sequence ID" value="CAB4005640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHD1"/>
    <dbReference type="OrthoDB" id="299997at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00198">
        <property type="entry name" value="vWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46478">
        <property type="entry name" value="VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46478:SF1">
        <property type="entry name" value="VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13768">
        <property type="entry name" value="VWA_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="15"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="300"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="517"/>
            <end position="626"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="517"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="532"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="561"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="571"/>
            <end position="582"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4005640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="815" mass="92254" checksum="9DEBD7BF6D6BC33F" modified="2020-12-02" version="1">MWIICFPSIFIFRVNEVRNWVNTLRPSGGCNLLGALRQLVKWKNIDSVVIVLGSSPDQEAELICQYVRQSLAGRQLPFHTVAYNCIAPDNGLLEELAKMSEGRYHCYSSSSNDKIFTGTDLRLLVHEIERAKETMRIIHEMRTGRLDEKIITIASNKPKVPLDILPVSDGTIVQRNKSSGHASLNVENPSFPARTSLDWLKQHGLKARGLNLYQVLAPNAYSYVRGYVSTINKNVKSKVYKKSMAQFPWHDGSIKNVHVDPTLLFVYQEQLDSTVQHYLRRIDWLSTGCRQVFGTFVEQRVIIIIDISVSTRPCFEVLKKCLKVLFEQQMANKKQYNIICFGSTPDMFRSSMVNPSPEYLQASWRWFLNKSCAGSRNFLEAFKMAVENNQDIANKTEVEGIYLISTGPPDSPKDLICSFIKESLAGKDISLHTVYYEDENDSSCYLPGRYASPADTADCLKQMAHAGKGRFHWYKIGDGIVESDDVTVIHGELNKAYNYSQNTGMLLDSVKRSRYPEEKVDSSLEDEKALVPVPPQQKPKPLPPPKQTALSQARLNGIRNRPSTASGHASKTSKKERSKQRPRSAVSSSQDVSVKPLCWKPNSKNSSGSLIPDIPRAASKEKETPGAQRQVFYTEIGNSVGAILKDYPSVVEDKKSSSIRRPIKDIYIPAKDENISTREWMRKYSVSKLKLDLNQLSGGTECSHSKSKVSTINKTVPARYCEIFPTVKVKGVMKHLHLTSRELEEYEAEMEKVMKRYVKRLQWLMSGSRRIFGTVIEKKVVILIDTSCSMAKSMPEIQLQLTGLIWEQLRELNIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHM4</accession>
    <name>A0A7D9IHM4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Talin-1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A074557</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006885">
        <property type="protein sequence ID" value="CAB4010733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHM4"/>
    <dbReference type="OrthoDB" id="10262320at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005925">
        <property type="term" value="C:focal adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005178">
        <property type="term" value="F:integrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030036">
        <property type="term" value="P:actin cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1410.10:FF:000001">
        <property type="entry name" value="Talin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.230">
        <property type="entry name" value="Alpha-catenin/vinculin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1410.10">
        <property type="entry name" value="I/LWEQ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.10">
        <property type="entry name" value="Talin, central domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036723">
        <property type="entry name" value="Alpha-catenin/vinculin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035964">
        <property type="entry name" value="I/LWEQ_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002558">
        <property type="entry name" value="ILWEQ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054082">
        <property type="entry name" value="Talin_IBS2B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054060">
        <property type="entry name" value="TLN1-like_RS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015009">
        <property type="entry name" value="Vinculin-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19981:SF1">
        <property type="entry name" value="RHEA, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19981">
        <property type="entry name" value="TALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01608">
        <property type="entry name" value="I_LWEQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21896">
        <property type="entry name" value="Talin_IBS2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21865">
        <property type="entry name" value="TLN1-like_RS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08913">
        <property type="entry name" value="VBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00307">
        <property type="entry name" value="ILWEQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47220">
        <property type="entry name" value="alpha-catenin/vinculin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109885">
        <property type="entry name" value="I/LWEQ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50945">
        <property type="entry name" value="I_LWEQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="858"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="858" mass="90288" checksum="8CC503067FF69B73" modified="2020-12-02" version="1" fragment="single">EFQDRMLQSVAQIRDAIDPLASAAKDTPESIGHRVAKLANFIEPVAEAAINAASKMPHSQKQTDLLDQTKTVAESATELLYAVKDAGGNPKSANAHPIVDDAAKNMQDAVKDLTDTLEEAASESGAVTGLVESISKAMNEFEHSTANMWMQPNVRAKMAVQGAPPETDDVKPFVHYQEKMTKTMKDLSRKGQDMVGRAGTDPSQLGPLGKDVTRLYNGLTQEAQGAIQTASSPEVAERVRTGVQALGASCMKLVQNCGDVQANPRDPISMRDLADAARKVAEKISHILAALQSGSRGTQACINAATTIKGIVTDLDTTVMFATAGTLNPELEGEKFTDHREEILTNAKALVEDTKALVPAAQASQDVLANAAQSAVSSISKLSDCVKLGAAALGADDTNAQVMLLNAVKDVASSLYNLLDSAKNSSGRHGDGAGEDLKNSTKDMISKVSSLLMTVKSVEDKTSRGARALDSSMDAIKQAVVILNSPTTAAREATPEDLIRSTKPVTLATAKVVAAGNSGNQEEIAAAANMGRNAVTELLTTCKAAAARAESAEVRNAVVVAGRESGTAFNSMLAQVHIVLQKPTNDKKQGLVAASRKVADCLGALVKSAEALKGSDWVNPEDPNVIAENELLGAASAIEAAARKLAELKPRERPRQADESLAFEEQILEAAKAIAAATSALVKSAATAQRELVASGVVCSTSSDPNEDGQWSQGLVSAARLVATAVNSLCEAANATVQGNATQETLIASAQQVSNSTAQLLLACRVKADPNSAGQKRLQGAGKAVRKASDDLVKAAQNARVFEEQSVTVIINQKWVGGIAQEIQAQEAIIRKERELEVARKKLMQIRQARYKDDEDSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IIW5</accession>
    <name>A0A7D9IIW5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A014332</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020006221">
        <property type="protein sequence ID" value="CAB4008762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IIW5"/>
    <dbReference type="OrthoDB" id="5871067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.690">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="342"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="9">
        <location>
            <begin position="807"/>
            <end position="892"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4008762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1059" mass="122034" checksum="8726AFA3F5782761" modified="2020-12-02" version="1">MPNGAGRKRRDIVNLQSFLRKKDCIVQIKNKDDLCCARAIIVAKAKLDKDPKYKSIVDHRGKVQGRLAQELHESAGVPLGSCGIPEIKEFQATLPDYQINVISKEHLNALIYSGPEAEKHLYLYHHDNHYDVITSMPAFLARKQYCHKCKKGFDKITDHPCGDLCKLCQTQNCPIVEWIFCKGCNRFFKSDECFNRHKDDAGPAKSLCRVLIKCKKCKRVVTRASLRDHHCGKVRCSTCQKYVKPENHQCYLQPVKAKKTRSPEEGNDLLDDNVTVENDVEDTKNLMFFDFECTQDDGKHVPNLCVVQNESGDEKVFSGPNTKDEFCEWMFQQENANMTFVALAHNFQAYDGYFILQYLYKNGVAPEIITRGAKILSLTVPEMNIRFIDSLCFIPMKLAAFPKTFGLTELQKGYFPHFFNRAENQDYMRPMPEAKFYDPDGMSRDDREKFYTWYNDQVERQAEILRYCQSDVDILRRCCLEFRELFHQVTDVNPFASCLTIVSACNLFFRKTFLQENTIVVIPPCGYKPENKQSVIALKMLTWIAERDNIAIRHARNHGERLIDKYLVDGFNVETNTVWEVQGCLWHGCERCYARDTVNPINHMTMQDLKQRTLENIQFLKDNGYSVVEIWTCDIEHQLATEPEMKDFFDNFEISEPLELVMHSLVEGLTCNKYGEYPIGHPEIITENFQPISDYFGLVKCSVLPPRALYHPVLPYRTQGKLMFPLCRTCADNLQQEPCHHSDAERTLHGTWHTDGLFKDYIDKFLKIKQEASGFPPECDTDEKKGQYIADYAAKEGIQLDPRQIVKNPGLRALAKLMLNSFWGKFAQLPNMTKVKIISDPAEYFDLLSSDQINVTDANFIKDKLIEVHFENVDEFVEADGKTNVVIAAFTTAHACLKLHGVLEQLNRRVLYFDTDSVIYVSKEDEWEPPTGSYLGQLTDELDGGYITTFMSGGPKNYAYETNTDKTVCKVRGITLNYRTAQKVNFNLMCDMVCLEALPDLTDSITVNIPYKINRDTKEKSVKTRSANKDYRIVYNKRVIVNNFDTLPFGFYINKLFQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJJ7</accession>
    <name>A0A7D9IJJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082858</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005763">
        <property type="protein sequence ID" value="CAB4007318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJJ7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8816" checksum="E22B0B5F0CAB5259" modified="2020-12-02" version="1" fragment="single">MWKTINKLTNKKSKTTTITKLNISNDVTEDPSKILHTFNTYFKTTGENLANEIPDTTDAPESYVTPSNSTFQMQNVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPC9</accession>
    <name>A0A7D9IPC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FERM, ARHGEF and pleckstrin domain-containing 2 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047877</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006892">
        <property type="protein sequence ID" value="CAB4010754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPC9"/>
    <dbReference type="OrthoDB" id="6019435at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00160">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.900.10">
        <property type="entry name" value="Dbl homology (DH) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035899">
        <property type="entry name" value="DBL_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000219">
        <property type="entry name" value="DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051835">
        <property type="entry name" value="RAC1-GEF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45858">
        <property type="entry name" value="FERM DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45858:SF5">
        <property type="entry name" value="MOESIN_EZRIN_RADIXIN HOMOLOG 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00621">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00325">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48065">
        <property type="entry name" value="DBL homology domain (DH-domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50010">
        <property type="entry name" value="DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="144"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="493" mass="56205" checksum="0FDCCC5E705C1A81" modified="2020-12-02" version="1">MPSSADNSMNSLRSSPRPMIGYGNVETRIIEADYPVANSLASIASNDESGHLYLSGRHTSTEQSREELNIDEIHHETEEENSNLVQETKSEEHHITLNGEHENTAREPEPLVNGDLIEPPVNKQGFVTPPPAALSDSDVDDPSQDVFSEGSSISSISSPLGTYKSDDSLDRKLPKGTAYHVAREILQTERTYVKDLEVITIAFRNTVFEKEALPEDVKELLFSNFDPLYDFHCLFLDELQQRLSQWESEESYEHHKIGDIVLSNLLQMKKFIEVIKNHEKVLLALYKTTKNSVEFEKIYKEFELQPACYLSFNAFILKPSQRLVYYKFILEKLVQYYTTGHVDYQDTKAALQEIAEVLGELESCTKILENYQKLIELERDLIGLENLVQEGRQFVREGCLQKISRSGSQARMFFLFSDVLVFTSRGGNVTNQFKVHGKFSLDSMKIEKGEDMHGLFCFNLITEDNTYMVAATTQVERSKWMEVRGSQCNGAEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPV3</accession>
    <name>A0A7D9IPV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029039</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008300">
        <property type="protein sequence ID" value="CAB4014438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPV3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="59" mass="6277" checksum="9204868B0A76C6AE" modified="2020-12-02" version="1" fragment="single">LADPNCWLSTLKSGLDPKRGPDPPTSIAPIVLGSFSGALNGFNLSLLRREKMKELGALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZS9</accession>
    <name>A0A7D9IZS9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A085629</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010826">
        <property type="protein sequence ID" value="CAB4020187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZS9"/>
    <dbReference type="OrthoDB" id="9902985at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043826109" evidence="2">
        <location>
            <begin position="20"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="293"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="335"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="412"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="297"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="362"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="372"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="422"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="447"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="468"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4020187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="661" mass="72097" checksum="450D88BF9EB7101F" modified="2020-12-02" version="1">MPSNFIISIYEQLVVLVCASVIGDSFTNTLPTNDVKSRFSNGNSPTCRIGHSPDNTETLPHIICHCHPNMPSITKGHNSVLQRLTNAVNCGTYTVDEVVPGAPGINRPDLVITENNKVTIIDVMHPFENDDSALTSAALRKEEKYNYLIDHFGTLNKQAKVFGFVVGLLGGWFPGNERRHYTNCHKGVSLIISAKCSICPKKFPEARGAGVHCKCAHNIGTNDSFPCSPTPVMSYVALDDESNNTTLTPSRKRRRQSSRLLAELDTSMSCPASSPSINSTSCISDTFDIPPPLQPFTPLSQSLTPSLNSIPPQPNFPTVGTASATHIDSIMSQHILPSPRIPHGPNSKSHLPGMINLDPESDPAPPSPPKPSASHPLPDTLPPSNSNSPSAAPSEPIPEAEVSFVGPTNAENCVQHRAPHPMSSNADTSDTAVSLSGDTAEDIFFPPTLPNPPPYPNPESSCQPPPTTNLIPPSNNTSDPIQRFHDKWSVVFSDSDNWPKFSDNCSVPVSNNRHPLRYNPIEARRLQSLYRISKKRAARKVINDNKPPYAGSVEDAENFFTNMFSAKFCDRDGIKRGLNDFVPSGPSDNHLGDHVSPSEVLKKLHSLSNSAPGKDRVEYRHLRTVDPKCEVLVAIFNRCMDENDVPAEWKESVTIFNSQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3Q8</accession>
    <name>A0A7D9J3Q8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078922</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011354">
        <property type="protein sequence ID" value="CAB4021286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3Q8"/>
    <dbReference type="OrthoDB" id="8195376at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="23272" checksum="F18E25F0D83913EC" modified="2020-12-02" version="1" fragment="single">MASGNTLHFDPDLHPDDTLKAFNYFIQSFYLRYEAQYSDPPKVSIDAAIERWKLANEEAKPTLEQYDTLRNERMYADWQVAEPDVTKRAQATWEYFVAQIQAYYKPTENLTLKNHKFRTLTQATQEAFPAFCNRVYKEAQHCNFKCQNDDCTAEDTAIQDQIIIGTIHDKIREEALKNSWDLPKLCKEGMQIESATKGVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J7A8</accession>
    <name>A0A7D9J7A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="23">Zinc finger 2 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="23" type="ORF">PACLA_8A061611</name>
    </gene>
    <organism evidence="23 24">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="23" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="23">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be involved in transcriptional regulation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the krueppel C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="23">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012583">
        <property type="protein sequence ID" value="CAB4023610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J7A8"/>
    <dbReference type="OrthoDB" id="40579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042054">
        <property type="term" value="F:histone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd19193">
        <property type="entry name" value="PR-SET_PRDM7_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000100">
        <property type="entry name" value="Zinc finger 45-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000478">
        <property type="entry name" value="Zinc finger protein 133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000247">
        <property type="entry name" value="Zinc finger protein 236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000358">
        <property type="entry name" value="zinc finger protein 24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000204">
        <property type="entry name" value="Zinc finger protein 331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000912">
        <property type="entry name" value="Zinc finger protein 660"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.270.10">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044417">
        <property type="entry name" value="PRDM7_9_PR-SET"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001214">
        <property type="entry name" value="SET_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046341">
        <property type="entry name" value="SET_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21549">
        <property type="entry name" value="PRDM2_PR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00317">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82199">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50280">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="9"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="19" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="21" id="KW-0539">Nucleus</keyword>
    <keyword evidence="24" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0677">Repeat</keyword>
    <keyword evidence="17" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="20" id="KW-0804">Transcription</keyword>
    <keyword evidence="18" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="16" id="KW-0832">Ubl conjugation</keyword>
    <keyword evidence="15" id="KW-0862">Zinc</keyword>
    <keyword evidence="13" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="22">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="22">
        <location>
            <begin position="543"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="22">
        <location>
            <begin position="19"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="22">
        <location>
            <begin position="65"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="EMBL" id="CAB4023610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="941" mass="106255" checksum="E12A674329F0EDFE" modified="2020-12-02" version="1">MENSIVGSEDVDISLSTSTERESEGARENDVHISTSEMGIQADFSDEESDLESYSSEGELVIAENEGRKDSSDSKVQDTGSKHSKSTQGEGTKTARKAIELKYIYGDDLSKNDIERLSKADVLVPPGLLIQNSSIPDAGHGVFANCEIPKHEFFGPYLGKIIEAKDAKNYEESHYIWEVKDDFGQLIHLIDGSDASQSNWLRYVNCARTVEEQNIQPVQYENSIYYMATQDISPKEELLTYYGQKYAKKLGLAIQKNDQNEAFQCRHCSKTYSNAACLIGHLKYKCNNGQQRSIFMPQPTDRVNPFKVDIPDDVVVRENEKMKKFRCPTCDKRFIRNYTLQCHMLIHSGKKDHVCETCGKAFTLAKHLQRHSLIHSGLKPYKCHLCGKSFTQQGSLQAHSRTHTGIKPYKCEVCGRAFALQSPLLSHMKTHQDEKAYKCSTCDKEFTHRNTLVRHELVHSGARPYTCSVCGKSFTQTNDLKRHSRIHSGIRPYQCHICGKAFTVEFTLVCHVRTHTGVKPYSCDYCSKTFTQPGARLKHIRKIHPDKPLPPSAKGRNSRGHVHSSQRIDFVHFTSTIGIVAGSYMNAGNDHLSNLNAVLTRLSGAGLRLKKIKCCFMESDVTYCGYGINKNGIHPVVEKVEAITKAPEPENINQLRSFLGMINYYHRFLPNVATILEPLHRLLRQGTKWEWGEEQKAAFDYAKELLQSAELLIHFDPTKPLILATDASNYGVGAVLSHVFPDGTEKPIAYASRSLNAAERNYSTIEKEALATIFGVKKFHKFLYGQSFTIKTDHKPLEGLFSDKKGVATQAAPRIQRWALTLAAYEYKIQYNAGKNNGNADALSRLPLPKMPLSTPQPSETILLMEHLEETPVNSNQIREWTKRDPVMSKVLRFTMQGWPESYDSTTFKSYHNKKFELSVEDGCLLRGTRVIIPPQDDQRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JL72</accession>
    <name>A0A7D9JL72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000398</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018026">
        <property type="protein sequence ID" value="CAB4031985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JL72"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13408" checksum="C659939A070C2680" modified="2020-12-02" version="1" fragment="single">MEDDLYTSSQVEDLDDNEPLTDDIKIPFLYKKNPDAAQDVEEKLNLWELSDEERVDFICTLQYKIVREFSKAVTLYEENGKYRQDILDDRTVNVLKNYDVIGMTVTGAATRLHLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JP30</accession>
    <name>A0A7D9JP30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041386</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019466">
        <property type="protein sequence ID" value="CAB4033690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JP30"/>
    <dbReference type="OrthoDB" id="5966378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026820">
        <property type="entry name" value="VioB/RebD_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34400:SF4">
        <property type="entry name" value="MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12902">
        <property type="entry name" value="Ferritin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="504" mass="56971" checksum="F26157DA6BE836F6" modified="2020-12-02" version="1" fragment="single">VDDNGGCTKVVLAEDKDGVDIHPFTRWVLRSKPVQSVTVRLFMTVYGEYPEQKSFNINVSCIGCGSASIRELPDDPGVFEFETTTKDPNHARLSIDGQVYFYQYYLEGRTAGSDHDSAIVILVWDEFQVPTQPNWIRHVKPIFQQYANLYPVMKINFLDLSNYYEVVENKYALIKTMSLDEEDPRYMPVTRDLSPGKVQMILKWLMDDNPRYGFSNLGIGEYTLKYLLQTALQLEHSTIPPYLTGYLSIKKGYNTQVKSILKGILIDEMHHLAQVSNILNAIDGNPNLFASHFVPSYPSYLPGGVHPDVKITVNKISMLQIRNVYMVLETPSKELEENGLMKAVDKIVKDKLKPVSVSTSADTDACDDVLTLYNDAVKRNEDIRTNHNTIGQLYTAILIVMAKLECDGELKFYDTKHQLEVRGEGGKEVTKVYDFGTAVQAIKNIMKEGEGSSPCNPLDDSSGLSHYYQFASIANGRHLKTITNYSKVSSRIQIPLADREFLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JSC2</accession>
    <name>A0A7D9JSC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Poly [ADP-ribose] polymerase 15 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A053564</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021140">
        <property type="protein sequence ID" value="CAB4035537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JSC2"/>
    <dbReference type="OrthoDB" id="6133115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010629">
        <property type="term" value="P:negative regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="entry name" value="Leucine Aminopeptidase, subunit E, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052056">
        <property type="entry name" value="Mono-ARTD/PARP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012317">
        <property type="entry name" value="Poly(ADP-ribose)pol_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453">
        <property type="entry name" value="PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453:SF67">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00644">
        <property type="entry name" value="PARP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51059">
        <property type="entry name" value="PARP_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4035537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="30118" checksum="B96596487A4AF911" modified="2020-12-02" version="1" fragment="single">MLKKGDITIGEGDAIINVLPDSLKLVDGGGVCKSILKCGGNVVQQEIDLRRREAARFIPGAIFHTSAGSIKNVKNIIHFVPSEFDVSALQGDIENCLRLAQKCSFRCILIPAIGTANFGFSPEDSANTILNAATNYSITSNHRLTLIIVVYQEEMLPNFKMVLEDKMKYALVDIPSNWAEQPNGKVVHLVNLPQSSDEYRENLKLFNNGNSVYEVTKIERIQNPGLYRAYIVKRQSMAGKVNERRLFHGTNATNIDKINTNNFSRSFAGEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JYW6</accession>
    <name>A0A7D9JYW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A037882</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024544">
        <property type="protein sequence ID" value="CAB4038753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JYW6"/>
    <dbReference type="OrthoDB" id="5984733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023779">
        <property type="entry name" value="Chromodomain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00598">
        <property type="entry name" value="CHROMO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4038753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="24699" checksum="C47A4BF7000AB04D" modified="2020-12-02" version="1" fragment="single">KHNIRFFTTQNETKSSIVERFNRTLKTKMWKYFTAKNTLKYVDILQKLVKSYNHSRHRSIGMRPVDVNEDNESIVWQKRYGEESDKPVRFKFNIGDQVRIGKARRTFKKGYLPSWTEEVFTITKRVLRRPPVYKIADFDDEELKGTFYEQELQRVNKTDSDFYRVEEVLRSRMRNKRKEYSVKWLGYSDKFNSWVPAESVKDIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K082</accession>
    <name>A0A7D9K082_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070451</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024585">
        <property type="protein sequence ID" value="CAB4038791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K082"/>
    <dbReference type="OrthoDB" id="5990197at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12564" checksum="9E53C89583782AFA" modified="2020-12-02" version="1" fragment="single">PNLIAKIFDILLRFRLNKIGVLADIKQAFLNVGIDAQHRDYLRFLWYDLQAEDEQVVIYRFLRVVFGITSSPFLLNGTKRHHLSNYLEKEREIAQRVIDDLYVDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0J0</accession>
    <name>A0A7D9K0J0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024539">
        <property type="protein sequence ID" value="CAB4038747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0J0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="28601" checksum="9D20E97726D05592" modified="2020-12-02" version="1" fragment="single">MSTWVVDLPVELEGKENQLKAFLKKLSLEDKFKNFQSNGLSQIEHLQDIHEKDIDMLGLTVFEWRRREITTWRSEEESAKIDGQGNIVVSIESLKRKYKALWYENPVNPTQIFSNSFILQMAEQRMQFEKTLRSWELWCRKQRSTRISFLLALAKTPVISTWNQYYKSQSIMGKCEILERQHPAVASFLENRVREESSNVPSKAMYENICQYVAKLEEVSTFSTNTLQKCDTEMAKCSPAGVPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K878</accession>
    <name>A0A7D9K878_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A063113</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029018">
        <property type="protein sequence ID" value="CAB4041845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K878"/>
    <dbReference type="OrthoDB" id="5976116at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005680">
        <property type="term" value="C:anaphase-promoting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060090">
        <property type="term" value="F:molecular adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031145">
        <property type="term" value="P:anaphase-promoting complex-dependent catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007091">
        <property type="term" value="P:metaphase/anaphase transition of mitotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070979">
        <property type="term" value="P:protein K11-linked ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024990">
        <property type="entry name" value="Apc1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12827:SF3">
        <property type="entry name" value="ANAPHASE-PROMOTING COMPLEX SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12827">
        <property type="entry name" value="MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0498">Mitosis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4041845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15107" checksum="AA6835D4D0F41C84" modified="2020-12-02" version="1" fragment="single">MNFECEATKLRFSIDHRIREVRRLLQSARPVHVSLVQNPEVSDHDFVQEQEARLLMICKRTLSLSVGRGMLTLATSRPTLTELVPIPPLEITGRALPRNAVISLDHVDVPNDMLVWPAFHNGVAAGLRIIPGISQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8X6</accession>
    <name>A0A7D9K8X6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A050611</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029676">
        <property type="protein sequence ID" value="CAB4042202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8X6"/>
    <dbReference type="OrthoDB" id="5982977at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="66"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="15759" checksum="CDBE82FE75F6EF28" modified="2020-12-02" version="1" fragment="single">DSDLTKHLEKEKQREAMDNEMQQAEELRLQSLETIGETSRRKGSDREETAPKRRRSDDTINYLREKSEKEMHVRQQELKLKKAELEEKKTESERLYQMIMQQNEQNQALLQQQQQVNLALIQFLTKQNEQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KBA3</accession>
    <name>A0A7D9KBA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013041</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033457">
        <property type="protein sequence ID" value="CAB4043884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KBA3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8744" checksum="608D0B6594284D2A" modified="2020-12-02" version="1" fragment="single">MVPAAKVRVSNENGKSDVLIRSIQHLVPLEVSQDSNADEIERNQNEKLTVVKDSRENRGRPRRAAAIANELLRGELLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KJH5</accession>
    <name>A0A7D9KJH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dynein heavy chain 6, axonemal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045421</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041102">
        <property type="protein sequence ID" value="CAB4045687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KJH5"/>
    <dbReference type="OrthoDB" id="286107at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030286">
        <property type="term" value="C:dynein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045505">
        <property type="term" value="F:dynein intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051959">
        <property type="term" value="F:dynein light intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.100">
        <property type="entry name" value="Dynein heavy chain, N-terminal domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.180.20">
        <property type="entry name" value="Dynein heavy chain, N-terminal domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026983">
        <property type="entry name" value="DHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042222">
        <property type="entry name" value="Dynein_2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013602">
        <property type="entry name" value="Dynein_heavy_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042228">
        <property type="entry name" value="Dynein_linker_3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45703">
        <property type="entry name" value="DYNEIN HEAVY CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45703:SF36">
        <property type="entry name" value="DYNEIN HEAVY CHAIN, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08393">
        <property type="entry name" value="DHC_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19740" checksum="958DB032E084FCB8" modified="2020-12-02" version="1" fragment="single">MTCQRNWLYLESIFSAPDIQRQLPAEAKMFMTVDKSWKEIMRKVVRLPNAMRAATQPGLLETFQNNNALLDQIQKCLEAYLESKCVVFPRFYFLSNDELLEILSQTRNPHAVQPHLQKCFDAIASLEFGSAPPPAQALGDAAGTERPSSASKVVETKTNDIIAMVSPEKEKVPLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KMH5</accession>
    <name>A0A7D9KMH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011307</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039412">
        <property type="protein sequence ID" value="CAB4045427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KMH5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14733" checksum="36DCA41F20A42B5F" modified="2020-12-02" version="1" fragment="single">MDKKKISNKQYYDAKKNTKTSNIKEGDIVICKQKPNNKLSPRFNPERFTIVERKGATATARNGRRTITRNVTHFKVVKPVDEQSSDEEKSTTVEDVQDNRVGDDMQDFIEESHPIARRSTRNQRTNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L453</accession>
    <name>A0A7D9L453_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012398">
        <property type="protein sequence ID" value="CAB4023254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L453"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002999">
        <property type="entry name" value="Tudor"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50304">
        <property type="entry name" value="TUDOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13374" checksum="38E877420E3E0E25" modified="2020-12-02" version="1" fragment="single">YYLARIIKVEVRLRSCIVIFHDTGRQETINWSSLFPLDMQANSDHSFHFQRSPFPHASPAPIQNWCMQQGPSFTPQFNHSRPTIPGNHAVQDSVMRQHSQRPTQAFYRPPRGTKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L4I5</accession>
    <name>A0A7D9L4I5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Snake toxin/toxin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A030369</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012546">
        <property type="protein sequence ID" value="CAB4023532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L4I5"/>
    <dbReference type="OrthoDB" id="5946309at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00117">
        <property type="entry name" value="TFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.60.10">
        <property type="entry name" value="CD59"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045860">
        <property type="entry name" value="Snake_toxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035076">
        <property type="entry name" value="Toxin/TOLIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10036">
        <property type="entry name" value="CD59 GLYCOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10036:SF3">
        <property type="entry name" value="PROTEIN SLEEPLESS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00087">
        <property type="entry name" value="Toxin_TOLIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57302">
        <property type="entry name" value="Snake toxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Snake toxin/toxin-like" evidence="3">
        <location>
            <begin position="22"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4023532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14706" checksum="F10707E28A529442" modified="2020-12-02" version="1">MMKFLLAIAAISLVLYEGFAINCYTCVNQRIGDCLRSNQTCGKGMDKCFSMQKEALDGGYRYTKQCADEWYCERTDAACNDLDEPEYSYMECNVGCCTDDLCNGAEGGLFVRSSLWMVLAVLVPFALYQLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHG7</accession>
    <name>A0A7D9LHG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040834</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018688">
        <property type="protein sequence ID" value="CAB4032777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHG7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15770" checksum="FB9F5F67A3046BA3" modified="2020-12-02" version="1">MFPGNSCSSPTLCQEEEREQRELNDDIEVMVHSMVTAIPASPEKMVALKEETANDETLQQLKQQMVQGWPDRKHEIPQNLATYWNICHELSEAEDTESQKTWYPTTCPSIAKSLTNSPKNGDSNKQHQAQPMLNQMHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LTZ6</accession>
    <name>A0A7D9LTZ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044522</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022076">
        <property type="protein sequence ID" value="CAB4036472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LTZ6"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="26374" checksum="ED91EED850924C0D" modified="2020-12-02" version="1" fragment="single">MGRFLLQLPWSNLFSTLQSCEEKLKLFTELINLGLDIIMPKLSVKVHETDRSRLTAQLKGLITRRQKAIGSNNQSLYKILRNKLNRERKRCRSAYYESKVKDLGDTKPRDWWREVKQICGTAKCTGRDLSSILHADLACDDESVLAGKINHSFLIVMRDYARSDRDLIAITFLQMVIYQYLSTSFRLPENLELIITIINPNHQYHRRYWMIENPSRPQASASCRSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2U1</accession>
    <name>A0A7D9M2U1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011569</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029840">
        <property type="protein sequence ID" value="CAB4042291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2U1"/>
    <dbReference type="OrthoDB" id="5983040at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17909" checksum="C0E1075487A76F76" modified="2020-12-02" version="1" fragment="single">MMVQDFSECKSEGRALSHEDRVFLKKVNDGILKLDDGHYEIPLPFKENDTKLPNNRRYVLKRLFKLKIKFKRSEQLRNYYTAFMKDIIDRGYAELVPAEVYRGTTVGAEYDSESLNQHLLSGPDMTNGFVDVLCRFHQEPIGVMRDIEAMFHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MCY7</accession>
    <name>A0A7D9MCY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089092</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041036">
        <property type="protein sequence ID" value="CAB4045681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MCY7"/>
    <dbReference type="OrthoDB" id="10067127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10577" checksum="2E3852AC05D76713" modified="2020-12-02" version="1" fragment="single">MDVIDFPGVDDSDKSIPELAKLLLSLTRIIVFVVEYKRAHTESTKEWLSILERENVPVLICLTFADKLFAELMGEKGDRDIEKVKAEIGEQLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FM07</accession>
    <name>A0A6S7FM07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Bifunctional polynucleotide phosphatase kinase isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A032610</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000330">
        <property type="protein sequence ID" value="CAB3980855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FM07"/>
    <dbReference type="OrthoDB" id="19045at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046404">
        <property type="term" value="F:ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046403">
        <property type="term" value="F:polynucleotide 3'-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01625">
        <property type="entry name" value="HAD_PNP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1000:FF:000078">
        <property type="entry name" value="Bifunctional polynucleotide phosphatase/kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000737">
        <property type="entry name" value="Bifunctional polynucleotide phosphatase/kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041388">
        <property type="entry name" value="FHA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006549">
        <property type="entry name" value="HAD-SF_hydro_IIIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013954">
        <property type="entry name" value="PNK3P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006551">
        <property type="entry name" value="Polynucleotide_phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01664">
        <property type="entry name" value="DNA-3'-Pase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01662">
        <property type="entry name" value="HAD-SF-IIIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12083">
        <property type="entry name" value="BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12083:SF9">
        <property type="entry name" value="BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13671">
        <property type="entry name" value="AAA_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17913">
        <property type="entry name" value="FHA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08645">
        <property type="entry name" value="PNK3P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SMAD/FHA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PNK FHA" evidence="6">
        <location>
            <begin position="3"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF17913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3980855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="586" mass="66405" checksum="A74FE0BE1A027F56" modified="2020-12-02" version="1">MECFLMCSDKTHGRIFLPDQKAVTVGRTPVTKITDKKVSRKQVELTADYEKQTVFVKQLGVNPSTVGDTSLSQHKTHTLGPGGKINLLAAKYEHFVYFTKQGENTSSKDLLDDKNLNQKRRHEPDSGQSGVRPFKRQKTAENKSRIETSKLDVELNENKDDINDLKAEFGEKIIEAINNSQDGVDSEVAKSSPTGKVDAQVEPSKCSQWDEGSSGTLLIHSSAGLMAREKVASFDLDGTIITTKSGRVFATGPEDWKIKYPEIPGKLQSLHKDGFKIVIFTNQGPISKGKLKKEDFQRKMENISSKLKVPLQVFAATSKDIYRKPMQGMWRHLVEKQNHGMPIDHTRSFYVGDAAGRPVNWAPKMKKDFACSDRTFAKNLEISFHTPEELFLNKKPASFNWPEFNPMAISQNAPLFIPTTSKLISNEQEVVIMVGYPASGKTTFVKKHLLPNGYVHVNRDTVGKWQKCVAMCGSELARKKSVVIDNTSPDKESRQRYIQAAKKKNVPVRCFLFNVTHDHALHNNRIRELTNKDKNYKSVGRMVFNTYRSSYQEPNTNEGFKEILHINFLPHFETTSMKEMYMQYTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FRR6</accession>
    <name>A0A6S7FRR6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Beta-2 adrenergic receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A058644</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000197">
        <property type="protein sequence ID" value="CAB3979432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FRR6"/>
    <dbReference type="OrthoDB" id="5959154at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="225"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="404"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="529"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="227"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="425"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="438"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3979432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="577" mass="66834" checksum="D54C51891F354102" modified="2020-12-02" version="1">MALCMFSHDSDYAILILVIGYADLLVVSYCFMAIKVSLKKFMERQARFVARRGAIVDLQERGVTLTKTASHSFMQSQRMIKVTAMVSGLFYFSWLPLMVAITRAQVTREPSDLLTLISSLQPLASPLANPLIYFFTWERYKKSYIRILKRLISCLANDGAIFNKGSNSAIVRSSAGQLNATESEGNKSAKKQTHKAANIVAETSPGQFNNRLINDDDEVPMVGGKQSFSYDSSMSSRRPTSQYPEAKRRSTFSMLSEGITVGKEFLAEKNMQREGHTRHKIEDEMRNTEDVSHNVIDESQYKNSFSIGKLDKNSRKVSKSWSSQKSSSKNHQKTMEECFKVNYGENMVDNDEVSVSSQLEHYVPDSSVRKNEITERPQNLADKCVITQRINQYLTNVINEGELQKSQKGRKTSGKHQEYTKKRNGSTSRKLYEYSTSKHQHRRNFRQKRPTQLHSRKRRKCSRKNYWEEFEDFRRKLDDDVRKCNKSDEIHKETENDHFHETFDRRDMCDNGETSHPFILRILPKSHEYSRHGNKSPEIPHRGYLNNSKKRNDVRKRLELNRVSKSKNTEASIWSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUV3</accession>
    <name>A0A6S7FUV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Zinc finger 271 (Zinc finger 7) (HZF7) (Zinc finger ZNFphex133) (Epstein-Barr virus-induced zinc finger)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A013908</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000355">
        <property type="protein sequence ID" value="CAB3981113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUV3"/>
    <dbReference type="OrthoDB" id="8117402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24376:SF235">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24376">
        <property type="entry name" value="ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="C2H2-type" evidence="8">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="C2H2-type" evidence="8">
        <location>
            <begin position="75"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="C2H2-type" evidence="8">
        <location>
            <begin position="120"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3981113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17435" checksum="195C1BB3EB1F7A95" modified="2020-12-02" version="1" fragment="single">RFSESHKLTRHKVSAHKINESFECDNCKKTFTKRQSLKCHWRSHLRDGLLLCHTCRKEIIQGQGHASEILSDDHFDCDKCNKQFPDIESLYQHKAKDHGMSYQCDVCIELKAREATGIGYICCVCDAEFEIATELEDHMSMHGNVLGNMLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FW94</accession>
    <name>A0A6S7FW94_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A030777</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000130">
        <property type="protein sequence ID" value="CAB3978640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5989194at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="149"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1341"/>
            <end position="1363"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="190"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="22"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1341"/>
            <end position="1356"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1595" mass="181937" checksum="6BCBEE977EE49E42" modified="2020-12-02" version="1" fragment="single">MSRRSSISERRDDIVESVKAAESPKRDEARQSRQRSLTQRGYYYMLERKLEFFAKETSAFRRAIDVTADDAKSDKSKLEIALTTLKVIKAGYESSKRDLEELFIQDRWGDSIEMINNTREESRTLIDLADTVIIEMMLKLDTTSEIQQNEAPSLLSEKTKTSKHSRPSKSLSYNTSTSSVRAKAFAELAAANEQAEFDMLIAEKEKARRECEAQDDLRKATERAKHDHDMAILKAKKLKAVANAKLDAIEQSVDGKDTAIRKLNVKHEDTSERTRTWLGDQSQVINDNNSEELSDLYEQKETITNLPTKYHPEKPVFHRKVTAPQDSNNQHRPAEMQYCFNAIVATNERLVESLAKQSLPKCHPDLFTGDVTMFYAWKQAFKAMIRDTGISPEQEVNYLYKYTSGEPRRLLDSFRKRQRKDPKKLLSEVWTELESRFGNIAAITHSLLEQLREKAKFEENDRKRLLEFSDLCADVVYQLDELPGLACLNYPTAIRPIAEKLPVSLQCKWEKKVVDFAIENHDAYPGFRVFAKTIGKQAKLRNHPNIVSEQTQKKKWRPGKRPEESRILKADVEDDKKTYCLFHSCDGHKLKDCKTFARKTLQEKIEWIRKAGLCFRCLSSKHIARDCKADIKCAECDSDRHSALLHREKKKDDEERKAGSAGERDEVTSSCTEICKNDNRGLSASKIALVDVPLRERPNDTHRVYALLDEQSNASLISPKLADKLGIKGKSEKYLLSTCSGSKEVRYGRRVSGLIAKSLSGKSLTLPTCVECDSIPEDKREIPTPEMAQQFPHLQSIASKIPPFDPEAEICLLIGRDAPEFLKVRSFINGPKDAPWAQKLLLGWTICGQVCLERLGGAVHISANRTTIQKPNECASSNGHCYSTRFAELQSPKPGNSTNFTFTPCPNNLMVKEILGEKRIINDIYHTSSNDNEVTLSIKDRHFVDIMEKGIHKNEFGNWQLPLPFRSPNIILPNNREQAVRRLSNLLRVFARKPNMKKDYFEFMGKLLKRNHATPLTEIDLVKNTQAMLSTANIRLHKVASNSVEVITALPEQDRETKLRELNLYSDPLPTQRSLGVCWDLENDAFTFQVQIPSKPYTRRGVLAVVNSVYDPLGFLTPITLKGRMLLRKLVELGNQKHVESPTLGWDDPLPASLNREWEHWRNALIRLKNILIPRCYHGKEFCRVISSELHAFSDASEEVIATAIYLKQISSKEEISVSLVYAQAKLGPKKPTTVPCLELSDLATRGSTVKNLVDNRWFEGPEFLTKPESEKDVIRVEFSVQNEDPELRPEITIHATQLRVRRELNSRKFEHFSSWSCLRRALANLIAVIRLWKKKKIQVTENNPKARRGQSSIQPKSKKGPSLEELKQAESIMIKKAQSEHFANKITILSEASKEECGRTPTSTELLKKSSVYRLDPFLDKNGILRVGGRLRRSDQEYAEKHPAILPKKRHLSHLLIHHFHNKVHHQGHLITLGAVRTAGYWIIGASRMGVARPSVLGEECHVSICKFIKDAVNSLERSVNLLKESTLQQPVNDDLRASQNRAIVNYRMCSQMKQRLRSALIAFHLMDDDDLTVHSQSEARRRAQSRCSKPRPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3I5</accession>
    <name>A0A6S7G3I5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000286">
        <property type="protein sequence ID" value="CAB3980390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3I5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="19337" checksum="94CDA8A8B6C39004" modified="2020-12-02" version="1">MAARFKIPTSLKRKAKKEPELPKFEWNLSKKKRSWVLYVWVRIPRKIQRKTRKCGYQKNNVESIDSTSRFVKEAALLNSEKGHRNIIRLLEFCKEPLSHDAWNYSCFDLCPFGVAKSLCTLEDFVHFVDDEFDFDFASFADLLPTCSKDVVEGLKYLHSKNIVII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4K5</accession>
    <name>A0A6S7G4K5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019256</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000320">
        <property type="protein sequence ID" value="CAB3980751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4K5"/>
    <dbReference type="OrthoDB" id="10055717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="589" mass="67145" checksum="9BC0F3898B5DC7DE" modified="2020-12-02" version="1">MLKCCHIRVAESRDIKPFEEIFIWGKLENKNEKFTRDSYIEGTEHFQQRTGLLTAPIKISAEMMNDESKIPICVLNTTDKSIRVYREQTAATIQELSSTHNIAHISESNMGGNNPSSQYDPVPEVSVGEQLTTQQRENLEILIRKNTQVFDYPGNSGFTTTIEHTIPTAVSDPIVCHPRRHNLGLTQKNNEAVGNHVKSGHLTPSKSPWAFPIVPVLKPDKTVRLCVDYRPLNKITQNDPYPTGNLQEVLDNLSGANYFSVIDLAQGYLQVPLAKEDRPKTAFRSPTGFWEWTRMPYGLKGSPATFSRLMQKVLGHIPPHRLALYMDDICIISKTFEEHLVNLQGVFDALRQHGLRVKAKKCAFAMKEVKFLGHKVCNKGVQPEEHKVKAIRAWVAPTCLKEVQMFLGAVGWYRKFIKDFSTIARPLTWLLEKDVTFTWGKEQDDAFNTLRHELVKAPVLAHPDPTRPFVVTTDASKVGLGGELSQEDAQGQLHPVAYFSRALTKRERSYPTYDREVMAMRDTLKHFRYYLLGAQVVMRTDHKPLLKILEQKDPFGRRATLMRDIAEFEPRIEFIRGEDNHMADALSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5G7</accession>
    <name>A0A6S7G5G7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011160</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001320">
        <property type="protein sequence ID" value="CAB3988404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5953722at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010281">
        <property type="entry name" value="DUF885"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33361:SF2">
        <property type="entry name" value="DUF885 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33361">
        <property type="entry name" value="GLR0591 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05960">
        <property type="entry name" value="DUF885"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1316" mass="150751" checksum="EA22DBC0F9FF124D" modified="2020-12-02" version="1" fragment="single">MPVNSVRKKFKKRCRVVASTVGVILLVSLTLFVVGLVLILNNKCDDSEETAGNVDLCRHSNEAIKSGLIDLLANVRRTSNEICPCAAFLTSSNKKLVPPREFLNPVTIKDTTDQARRLFKQLKSLTIDESKLTPRELRSLAEVEHFLSHNFGDPEEDYYTGSWLLGPNIMCTSDYMCQWFKYHIVYTAIVPPKSLQDILQVRKALAYYNKTVYQYMENIRYGVRSGMVQSIEACLAGLYAIKTEYVKIAEFNATGILREWFVQSMLKPHYYASLSKEAKEEWLKTHGKTVGESIQEFLVEHIGKPLEKLLKFLEYDNMLYCVPSSVSSGLANLPLSHIYFNGTKTDKTTTPFLPTGEKLNGSNAYEKLLAFHTTTNMTADEVYSLGWKHVNLLYPQILELAKNVTGHSNESQAIKDFQDLLTDRSQYYNKQPFPQNESFAEAIKNCVGVDNAKKFCAKRWEALQIWFDEEAKLLGKLDPKTYNLFHYTGSKRTTPNCPIQLIPSFMPVAAQSYQNSPSCRTPARIRLPFFNDNYGPRYQGLSINAHEGRPGHHTQMQGYPENFESSCPRPRDDLRWLNKKTRYSAFSEGWGLYAEYPLVPEFTNAYENKPLSRYGMLKGQIWRALRLVVDSGLHHKEMKRDEALALFSKYMWDTSDVVSKEITRYESVPGQASSYKIGQLTFIDLRDYAQKQLGEKFNMRDFHYELLRHGSVPLHYIKYQVNKYVAYLHKMNWSNMIFEFTLTVEANPEVQEERSKVQGPVHSTAGGDRGILKEWFTKGLLIEYVGKPLVKLLRFLKHDYRWHCVPSNISSGLTSLPLKYIYINGSQTRERTTQKLPFGEKLNGNKSYERILYFFTTSEDLTPEKIHELGQQNLRILYAEAIKAAEKQTQKLDIEAVDGFKKILNNQSSFFNDAPFPANESNEFAFAKCTNLTQAKIFCPKRNEAFQKWSAFVREILSFLEPKTINMFHFTGKKKTTPNCPLQVVPNFNPKSGSQSFRSAGYHCETPCNYRLPFFMDNLGPKYNAYSVAGHEGRPGHHTQVQGAAENFDDECEDAISWLDSIGLYPLFSEGWALYAENPLIALESDAYENNPLQKYGMLKWQIWRALRLIVDTGLHYKENSMQTELSLSHDYYWAFQCDKATKDVTRYQSNPGQAVAYMIGQQEIWNLRNLTKRKLEEAGKKFNEKDFHYQILSQGKSPMEYVKIHINKYIDCMNSSCMNLCLVTRHKQHKEPMTVRIDITNTNKRGFGGHKIGGNGVQETAKGSFIPEHNDGRNGNCSENLQENLPRSTDGTFFSGHGSDLDGKTVLAAIDYIIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6C5</accession>
    <name>A0A6S7G6C5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057736</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000743">
        <property type="protein sequence ID" value="CAB3984472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6C5"/>
    <dbReference type="OrthoDB" id="5971437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000993">
        <property type="term" value="F:RNA polymerase II complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031124">
        <property type="term" value="P:mRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006569">
        <property type="entry name" value="CID_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008942">
        <property type="entry name" value="ENTH_VHS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12460">
        <property type="entry name" value="CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12460:SF40">
        <property type="entry name" value="REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04818">
        <property type="entry name" value="CID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00582">
        <property type="entry name" value="RPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48464">
        <property type="entry name" value="ENTH/VHS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51391">
        <property type="entry name" value="CID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="269"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="481"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="574"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="729"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="852"/>
            <end position="1080"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1092"/>
            <end position="1184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="270"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="281"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="307"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="322"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="345"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="365"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="402"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="491"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="574"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="852"/>
            <end position="866"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="874"/>
            <end position="904"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="912"/>
            <end position="939"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1024"/>
            <end position="1050"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1051"/>
            <end position="1063"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1156"/>
            <end position="1172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1174"/>
            <end position="1184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1184" mass="132315" checksum="9A36559858A48ECD" modified="2020-12-02" version="1">MFAKPDRRLVLFYLANDIIQNSRKKGKEFSQSFSKVLGDAMQYLRDTSIRPSVERVLKIWQERKVFQKDMVQKLLDQLNNVSAKPKPKPKPEVSVPKKENDKVKKEKKTKRPVPVNFKATSVTRAIATMQGIEEESERRQTLVNQMRLDASSSEGIKQLKDYAGGNRFSLEFEESSTKYEDLFQSLEDESRHRQVLVNVLEDGDAYYQASLKEATIIANAYRSFGNRLHSMKKKLDNKIRKFATAEKEAPVSAPKASFLASGLSGILEQMNESPAGTPSRSETEKNDDAKEGEKADGNEGNDNQDEAEGKIVDPSVDHVEVSDMELDSESENGGDDTEPGAAPQLSDTNSSTSAVSTPKPVPTGSAVTTLSPSLNIASPSVQPKPQYGYTMTVNNSEGNETSSPASHNSAPSPDGSPDLNLEIYEGPPAANALPSDQLGVMTNQSFLGGVTNEQKPAAGSPGPNTMNLLAQLMNKQWRNDGSFVEGADSPGQGSNTSNTLVQDDSNRGPLINLLGNLLNRPLVHSQANQVLQQGEVNQSGDQVAEEGIQQEATNVESFDPAVATDQVESKLTDVAEAASKHDSGPSTDEEGAAGDNTPEHGLDFAQASPIILRSDTLFPHPPIPPNFSGPGQMFQNRPPMGSPPFVSPDRMPRFPNEPGMFMRDGPRRTSMEEQLMEEQHLRSPGMRSPRMQGPPMEWNRGPPFGPRGNVQPVRESRDPRLRRREMMGRSTEGPPFIDRVPPMEIRGRPPGIGHPADRDGVPTFMERQGHDIRREEMEREEMIRRRLSVGDERDGPISIEERRIWVMGEGRPPMEMRPELHGERREGPFPFERHLGVEIRESFHPIERHIDGSLPLDRREGPHPLELRGGPPHMRGDMNHPVDRRHPIHPMDRPDLPRERREPLPFDPRGPPMDRTEPHHFEAREPPVDHPMDRPDWHPTESNPFDQRGPPIEQLDGSHSTRGPAFDGPHPVGHQNEFHLLEGAPDEVPTSEEELPDGEDRGDKSTVGVMPQEQNPGEVFPEGGDERPPVHIHEGPHPKLDKPDDLHNEMKFNQTEGPRQNEQLGGPMFRPGMRPQLRPLDERSMFDIRPEFHMDDRGPAFGPPGRRDDNRPIRPIGGPFGPRHEGRGRFPGPRNFHPNFGPRHFRPRHEHEGGRPRFHPMRGGPRLKRPGPRFHPDPAKRPHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G8Y0</accession>
    <name>A0A6S7G8Y0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082065</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000877">
        <property type="protein sequence ID" value="CAB3985482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G8Y0"/>
    <dbReference type="OrthoDB" id="10532878at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22506" checksum="7373DD8543117E33" modified="2020-12-02" version="1">MCDPEQESCETHAEWQHEFENSFKNQTTINDIKATLPPNSPRRSSKTLTCAILNKSPVKPTRNGSMFSVNLCDNEKSLTIRAVCFNEDIYPKLESNKTYELESFKVKKSFGDKATSELVLDHETKITLAASQVQIEDCSYTISEILRGETGDKRFLNVKAKVVSLEKPCVVGTFPETKTKRTVCVGDMTGQMELILWRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFW8</accession>
    <name>A0A6S7GFW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Receptor-type tyrosine- phosphatase S-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001740">
        <property type="protein sequence ID" value="CAB3990868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFW8"/>
    <dbReference type="OrthoDB" id="10253954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050713">
        <property type="entry name" value="RTP_Phos/Ushers"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957:SF3">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="495"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="525"/>
            <end position="601"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="531"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="573"/>
            <end position="601"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3990868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="601" mass="66708" checksum="2EA94092305F5A73" modified="2020-12-02" version="1">MVKSGDSEIQLSDNIPSEVCATSKDLQADDATNQMSTSEDPAVQILLPDKTTNLTVTNITSRSVQIFWADPENTGDDRGRAAVLIGFLIKLKKGNALIRNVTTDKVNKRKLTNLTPCTTYEISVAAKNKHGFGEETIASLMTSEEAPSGPPVNIKSTSRSASSLSFTWDSPEKDKQNGVIISYTACVSHSENGPCLEIFTTSKREWIVRNLNASTKYYVRVLATNKAGSSAYSGSKAFFMNGRAAKKATEVTSSTLTFSLEIPSKTFLYFYVVALKLKGGKEPASSDSYENSELVKYAEARKSTNPKSYIAAVVASSGVHRNMFILGDGRNTSDPTSRRRRSISSDYYNGPLEPGTSYSVFQRIALNDKSEYYSTDWSPPSKTNEYTGGPHVLTKMSSGDIKAKEGDLVNLMCSAQGEPPITFSWEKDQKPLDSIVEIEKPHRSSFLVVTVEDQSSFGKYICHIRDRFQSTTYTIWVQKLEDIGNDKNDDGSDKYLAGIIVLAILLIISVVINIAYFIYQNRRHKSSKANPENESRDRNNSKDIYENPDKIKDDANYEQVESEQSTYTALKRTGKDENDDHLYGHLNEVHEDSVNQKETGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHB2</accession>
    <name>A0A6S7GHB2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053501</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002133">
        <property type="protein sequence ID" value="CAB3992834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHB2"/>
    <dbReference type="OrthoDB" id="6010336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="38"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17890" checksum="5DD902E5DFEA5AF9" modified="2020-12-02" version="1">MSDLDSISNTSDIENSDVSDDSENEYVFSGQYLPYQNEPLASESESSSQDDDELDEDGLSVEILRQRYEKEVAVDKWCTCGKCNHLHLVGAREYRCCREVIECVGKYTYIGQNVGCITDHEDFSSLTNRTVLLEVATLLRNKDGKRYRRQPGNTENQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJS1</accession>
    <name>A0A6S7GJS1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">U3 small nucleolar RNA-associated protein 25 homolog</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">UTP25 small subunit processor component</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A036167</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the sulfatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001900">
        <property type="protein sequence ID" value="CAB3991683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJS1"/>
    <dbReference type="OrthoDB" id="10264378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034511">
        <property type="term" value="F:U3 snoRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.550">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010678">
        <property type="entry name" value="UTP25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053940">
        <property type="entry name" value="UTP25_NTPase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12933">
        <property type="entry name" value="ORF PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12933:SF0">
        <property type="entry name" value="U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 25 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14707">
        <property type="entry name" value="Sulfatase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22916">
        <property type="entry name" value="UTP25_NTPase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="220"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfatase N-terminal" evidence="7">
        <location>
            <begin position="36"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="domain" description="UTP25 NTP hydrolase-like" evidence="8">
        <location>
            <begin position="830"/>
            <end position="1070"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="543"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="671"/>
            <end position="731"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="679"/>
            <end position="699"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF22916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3991683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1257" mass="143875" checksum="37D15264F6328661" modified="2020-12-02" version="1">MADLMEAKYHVLFLVLLLFSSNCLYIRTVWGQITKPNIVLITVNQFGLSDLNNNWEYLKNIRKLSKDAIQFSHAYTQLYQTSSRAALLTGRLPVKTGMLKGRFLPFTSLPSIASSGGLPLTEQTLAEFLRRNGYTNKFIGLWDQGLGSKGKFLPLNQGFNSWFGVVTQHSESCSSLRQKSHETFVNDEALSIILYCVFWSLFLVASLWCLCFLKAKFISLLVILGVVLYATNNRTTFIMVRSCVLYKDRHIVAQPYDVENITLRFTDEALGFMKTAAHPFFLMVNHLAFSKPLFASPFFKNTSGKSDMFLDSLAELDWSVGSMLQSIEHLNLTDDTVFIFTALSGDINFNDNRPCNSSSDMQGNQDGCHGYSLRGNYSTPDNWGKQIQVPLLIKWPKMLHSGATINQTVTLMDIMPTILHLTNTSYSNETLNGKSLVGLIKGTTESLHSYVFHYLDVTRPSAVTHNEYKAFYSTMSDNGLVHHDPPLLFNIQNDPEETSPLSVEDYSELMANISEAREKHIQMTVARVNLGANVTRSICEKTNMDAKKGRKRKGKSNSFDLKQLTKGQKKHLKEYGELHPVDLEDNEHETQATTMKKSKKIERIIDDSMKTTKKKDHTKTIHKEKYAQDVKDDDELEEISAYQKLVSSFMNGQALSKKKITKKLTKKLNQNNTNNVVEKSTKDSKMEKNLDIKDNKDNEKLEEEVLNLNEGNDSDSEDEMKSLPGRTQPEPFSQHFEVDLEEDVIERLGNRPSVKPIKTAVKNDAAVHYPSLPEAQSKDFPAMDPQSTLESLWVKPKLGQNWNNLNHENRVNGEAFTSLQQELFPILNSYQDLFYCNRDFNNGEEIRKMYCLHALNHILKTRSRILKNNAKIVQAQKESKELPGEPRDHGLTRPKVLIVVPFRDSALKIVEIFIKLLTEKGEGQVMNKKRFFEKFSESEADSGPQNKPDDFKKMFSGNSDDFFRVGLMIMRKTIKLYTEFYSSDIIIASPVGLRSIIGAEGEKRRDFDFLSSIEVLIMDQVDVFLMQNWEHVQHVFDHVHLQPKDSHEVDFSRVRMWNLNGCQVGSVCQVVVQIPQIYHKVLAPSHKEIAEKRFEFFVNKIFPDLQGASGMLSHTAIFIPSYFDFVRLRNFLKKEEIDFLQLSEYTSRANISRSRNAFLQGKTSLLLFTERFYFYYRYRIRGIKNIVFYELPHYAHFYPEIVNYMDTSLEGGEISASNCTVLYSKFDIHRLSAVVGTSRCSQMTASEQTVHMFVTGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKN0</accession>
    <name>A0A6S7GKN0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="5">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">DNA 3'-5' helicase Q1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A016211</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020000871">
        <property type="protein sequence ID" value="CAB3985421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKN0"/>
    <dbReference type="OrthoDB" id="5987985at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF105">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE Q1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="7">
        <location>
            <begin position="90"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00044566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3985421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="27214" checksum="3B9530F862E01AEF" modified="2020-12-02" version="1">MVDHQFHSGYYCKNAKSFRAAYGDLSILRSLCKEGTPVLALTGTADNHTREVIMCDLVINSDVLEVFLSPNRTNLRINVIKTTKKDALSNLDWLVELCHRKQSETPKTILFCHTMKDVATVTNYLMLKLGSSAYSPPTSRESEDCLIGIYHSMSWDNYNYKDRIVSQLKSNWKVRLVVATTALSMGVNFPGIRYIINWGPARNLLDHHQEAGRAGRDDKKPQILWLFTMDNSKLTVRTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVL8</accession>
    <name>A0A6S7GVL8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Nuclear autoantigenic sperm</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A016933</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NASP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002407">
        <property type="protein sequence ID" value="CAB3994172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVL8"/>
    <dbReference type="OrthoDB" id="5587616at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034080">
        <property type="term" value="P:CENP-A containing chromatin assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006335">
        <property type="term" value="P:DNA replication-dependent chromatin assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051730">
        <property type="entry name" value="NASP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019544">
        <property type="entry name" value="Tetratricopeptide_SHNi-TPR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15081:SF1">
        <property type="entry name" value="NUCLEAR AUTOANTIGENIC SPERM PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15081">
        <property type="entry name" value="NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10516">
        <property type="entry name" value="SHNi-TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0802">TPR repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="37"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="506"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="427"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="41"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="73"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="120"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="215"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="311"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="508"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="557"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3994172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="580" mass="63719" checksum="9EEE30A3776B3395" modified="2020-12-02" version="1" fragment="single">NNKYGALSNECGDAHFQYGKSLLELARLESGVLGSAIKEAVEEESPDYDEDTSMETEGQGGTSAGASAESSSNNKLPTIVKTTTEDNTAGQAKPSEETVAKGSAEKAEGCTEEKMEEDGTESKTDDDKKESVEGEEKAGTSEEKPAGERAVEKMVEDTTEESKVEDKSSDDNKDKTEEEQQGNDNKDVSEDTNKGDKESTSEENKEVDDAVGENEDQKEPEGQKEDVEDGENKTTGEQKEDVKDGENKTTGEQKEGVEDGENKTTGEQKEGVEDGENKTTGEQKEGVEDGENKTTGEQKDDVDKDNKDEDVNVDEDVNDEQTTDDGPVSTIQLAWETLELARIIFKRHSNTEMQLKLAQTHLLLGEIHMEQEQFSDAVSELTKCLNIQKNLLKSDDRLLAETYYNLGLAYTLSMLYEESASHYGNATEVLELRLKNIKTRIEEAEQQDKGKGKASDDDPLVKDRKELAELEDLLPEVKEKCLDAKNENERLKSNIKEKLGLTSAGFESSSLSTCSTSCSDKPATDIGHLVRKKRKPKDDENTENIEAPAKKPRQEGESTTTQPENGNSTMAKANGDEPQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWI5</accession>
    <name>A0A6S7GWI5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sodium glucose cotransporter 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A048714</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002447">
        <property type="protein sequence ID" value="CAB3994366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWI5"/>
    <dbReference type="OrthoDB" id="6132759at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005412">
        <property type="term" value="F:D-glucose:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="entry name" value="Sodium/glucose cotransporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11819:SF195">
        <property type="entry name" value="SODIUM_GLUCOSE COTRANSPORTER 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11819">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3994366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="14760" checksum="062467A2104D98A2" modified="2020-12-02" version="1">MFRHFDDPDFPWFGLWFALPIVEIWYWCTDQVMVQRALAAKSVVHAKGGTIFAGFLKILPMFIMVFPGMISRVLYKDDVACPDAESCERACGNKLGCSNLAYPSNDGDAAAGDVVNFDDGSDDGGGGSGDDDADMC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H046</accession>
    <name>A0A6S7H046_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033261</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003048">
        <property type="protein sequence ID" value="CAB3997205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H046"/>
    <dbReference type="OrthoDB" id="7862313at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046856">
        <property type="term" value="P:phosphatidylinositol dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050776">
        <property type="term" value="P:regulation of immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009966">
        <property type="term" value="P:regulation of signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057509">
        <property type="entry name" value="C2_SHIP1-2_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000300">
        <property type="entry name" value="IPPc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001660">
        <property type="entry name" value="SAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46051:SF1">
        <property type="entry name" value="INOSITOL POLYPHOSPHATE-RELATED PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46051">
        <property type="entry name" value="SH2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24147">
        <property type="entry name" value="C2_SHIP1-2_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22669">
        <property type="entry name" value="Exo_endo_phos2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07647">
        <property type="entry name" value="SAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00128">
        <property type="entry name" value="IPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00454">
        <property type="entry name" value="SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50105">
        <property type="entry name" value="SAM_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="999" mass="112927" checksum="1AEABFD6C3FBEB68" modified="2020-12-02" version="1">MKAELALVRERIAWTRRQLCRVDERILSLNEELWMTLNEEHYATAKRMISASSTKTFNKARSTQIAKFTKLTSFGRTHRRQEDLASHPLQRTVINMSARRLTPVDVAIQHLVEEHEIFDFSVVCLLKLFTDVLALGLNFAVVPRVLPKEEFVQRLEPKLYHMTNDEASNIRVQITEVLRRATLPASNLTKNKKDALKNLRADKSIHILKADKGNATVILDRLEYDSKILALLNTSTYKELKRDPTANVERKICSKLSGFKKAVVGKTDHHVVNSKEFVTKMEQITLVEEAYNLQKFLDHINSLHPSIKFTFEDISIKNSVCKTLINRAKTICEKIEYQSENKLFRALCTHKDNYVLRNTRRIARKPSKINLLWLNIYLDLRPSHKFSRKMRESIEIEKHNTIDQEGKPLDTLMKIRAYGSKALHTEVASQSLWGIRLVILAKPGHTNRISRIEKSSVKTGIANTLGNKGGVGISFGFLSTSLCFINCHLASGNETLRKQRRQLNYMDILKGLNLGHKSAYDLTNQFHHVFWFGDLNYRIDLQYEEIMQAIIGMDYKKLSSEDQLKKEQDIGNVFVNFHENVPHFPPTYRYKRGTRESYEHIKVKRAGNRINVPSWCDRILWRSFPDLTVRQNSYGCTNDIVSSDHSPVFASFDVPIASQFVATPDKGRPQSQPNKPSCKINIPFIKVKVKTVSKTDFYLEFHSACLATSVRSKTGKSSSPWDPPRAVNSKPTLTSYLEWTDSLPELNPILDNPDYLREQHILIAVKSEAGDESYGECVLSLKGHLFNTPQTFDSGLTHGGIKAGEIRGSMNVLNTKQAAVLRRPPVHAKPDIGAKSPSVNRPYSCVATNLSDSIPTSRIKSASLGRQPSPVRLRSSGQMPLDTTNISTYITLPDFSSVTTSNNPLDQMTTTESSVPPPLPAKTYPSKTSTLPGTVDEFLSKIGLGCYLSNLEENGFDDLTFLDNISDEDLADSGITDNGHIKKILNEVERLRKAGAFTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0J4</accession>
    <name>A0A6S7H0J4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003256">
        <property type="protein sequence ID" value="CAB3998053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0J4"/>
    <dbReference type="OrthoDB" id="10267344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="35082" checksum="3695C4B3AEBDAF45" modified="2020-12-02" version="1">MSSKNISRDLIKKAARLLKGEKLTNEQQAAYRLHAQKRVKYKRLKIYVTRRNQQWSIDLADLNNLSRYNNQYRYMLVCVDVYSRYGMVKLLKNKSARNVANKFKELLREYGVPEKVQSDEGTEFSIIKRDLAPHYGFQLFSTFNRETKAVHAERFIRTFKEMVLRSLTTLNLKYRYVDYLPIVVERYNESPHAGIFNATPHDVYIRGKSLNSRKLLKRMLNKSQPTRNLLHEGDRVRLSRVKNNIFEKSSLQRWVREKFIVYKVLITDPVTYELRDEKGEKIKGIFYREELQKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H1G4</accession>
    <name>A0A6S7H1G4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">VRR-NUC domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A049481</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003173">
        <property type="protein sequence ID" value="CAB3997735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H1G4"/>
    <dbReference type="OrthoDB" id="5987341at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014883">
        <property type="entry name" value="VRR_NUC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08774">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VRR-NUC" evidence="4">
        <location>
            <begin position="46"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3997735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="27115" checksum="4EA74A0C039DB3C5" modified="2020-12-02" version="1">MKLINETDLHYAVVEYLKKYHPKALILPGLGEYQDTSQKRCDAWRKGYMGGQPDLTIVTPSNGFHGFAIELKTPKGTGEVRDNQVSWLKVLNENGYRTLISNNYTKIVLDIEEYFRVDKIKKPLEEINNLKIKCKTLKASKCKEVVIRQIGYTVVNLSYLISRIKDNLQDKTQLNLRYLTSRMEDKPEKNQVPVTSEKKKDPKRVAAGKRLGAISRIAKEGKRKQAEPNDYLVMIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8K1</accession>
    <name>A0A6S7H8K1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003571">
        <property type="protein sequence ID" value="CAB3999363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8K1"/>
    <dbReference type="OrthoDB" id="2213994at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="398" mass="46098" checksum="EFD283E796C8A2FC" modified="2020-12-02" version="1">MEKSVHDILIHKKDGTDNPANFRPITLESVPLKVFTSCLRNKIFAFLSENNYIEHDIQKGFIPNVAGTVEHTVHMAHIINTARIKQRSLVITLLDLKNALGELHHNLIYKVLQYHHIPDPINELIRSLYTNFQTSIITEKFSTPFITVGRGVLQGDCLSPLLFNMSFNTFVQHIKSESFPELGFWKFNKTGIPCNPIHWFQFADDAAVISSQEKENQILLNRFSVWCQWANMIIRVDKCSTFGIEKHSSKSVQYQPKLFISHLLVPRTETGESFRYLGRYFNFNMSEEKPQSDICDLFNNIISKIDELHLYPRNKILLYSRYLLSKISWDFTITDISQTWVCETLDGIATKYIRKWLELPISATLSNVYLPYNKFGLNVILPSTKFIQCQTVSRLALK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCY7</accession>
    <name>A0A6S7HCY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A069096</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the otopetrin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004478">
        <property type="protein sequence ID" value="CAB4002894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCY7"/>
    <dbReference type="OrthoDB" id="6429739at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015252">
        <property type="term" value="F:proton channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004878">
        <property type="entry name" value="Otopetrin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21522:SF32">
        <property type="entry name" value="OTOPETRIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21522">
        <property type="entry name" value="PROTON CHANNEL OTOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03189">
        <property type="entry name" value="Otopetrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="10" id="KW-0407">Ion channel</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="168"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="242"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="273"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="353"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="391"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="418"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="459"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="493"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="539"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="569"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="22"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="11">
        <location>
            <begin position="44"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4002894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="610" mass="69328" checksum="22508E770C0045F2" modified="2020-12-02" version="1">MEIAQSTDDTEPLARDKELVCHSSSDVETCKNASKSRKNRQSKSDSTTPSTSSDAESTSSSRKGRMKPRAARIEKPVYMQEIWYSCEEEQPLLPKDEENSNLDKVTVNIPIKQDGSAKSISKASSTQRFCSVFIVFLLPLIVGLTLILSVNIKSDVAARDINPVVFHYYKIGLIAVFILWTLLLVFKHSNHRARNEDFEPLIPSHLLNGLVLFGVCNTTFQAIVGIDWTKCSRTISGLDKSYLATAIFETLFVYIQIYVFYTLSRRRKQKLWFGNYFTMFTLAINLTLWVWYFCAGAAKHPDLKNVTWLSRYYYGKINEDLCATSLNNTGNSSESRKLHEFVKWMRPYQYTFAMEYSLLASALLLHVWEFATSPPTQHHHQPAANAEKWDVWRFGFIAGLFSLPLMGCAGVHSRTNAAFFYGVQAVLLFFIFVCSGRGLWLFRKHYKRVTDTKALKVDLILLCVSALGFFILDLFTIFVCVAETLKSYQGDKFMLALTSLGELVTITCLTAFVFASYFYEMPLALSEDGDKAAKAIRQIASFCITVSVGFWLIRTYTFRSKDYFDYVGWTYFGPTAWFAITLFSTPMCIFYHFHCAVCLSGMIADSSGVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HDX4</accession>
    <name>A0A6S7HDX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032692</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004091">
        <property type="protein sequence ID" value="CAB4001457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HDX4"/>
    <dbReference type="OrthoDB" id="5842105at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="19477" checksum="81579B66D878AFE3" modified="2020-12-02" version="1">MDSDSHSLHPVRHIKDVEPNVGRMLCKLFPDDENVKLGSKRRSSREQEHKRVDQGSPSRRRSRRHSSPSSHRRKRRRRDREGRHRSRERYDSLGLIDPRSRYGVRKETLIHGSYSDYVREFHRSRQPSSAFPPYGRIDPYAVVYATDFMRHERPPSYSRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYH9</accession>
    <name>A0A6S7HYH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A046417</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007145">
        <property type="protein sequence ID" value="CAB4011435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYH9"/>
    <dbReference type="OrthoDB" id="3213154at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd21980">
        <property type="entry name" value="HMG-box_HMG20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051965">
        <property type="entry name" value="ChromReg_NeuronalGeneExpr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46040">
        <property type="entry name" value="HIGH MOBILITY GROUP PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46040:SF3">
        <property type="entry name" value="HIGH MOBILITY GROUP PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00886">
        <property type="entry name" value="HIGHMOBLTY12"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="131"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="96"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="207"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="132"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="150"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4011435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="37994" checksum="3C228EDB76F6F0F0" modified="2020-12-02" version="1">MPDCHLPDKISLRSSNNSPPLDKQETVYLKQEPSSRSSRGKKRKKSLKDSNAPKAPLTGYVRFLNEHREKVRQEKPELPFYEITKILGTMWSQMPQEQKQSYLNEAEKDKERYSKELVEYQQTDAYKSFVAKQEKAERERENSGNQKSTESLHKTDTNGRDKSNETAKQAGRQTDLKQQNKFNALIGETSFNIPIFSEEFLNYNRSREAELRKLGDLRKANNDYEEQNAMLSKHIDNMKAAIDKLEEEVTKSREENKTLHCHLTNFRQMLSRSLAEVRLPQSDREPSEDYVEEFVEELSKMFENPSLHEEILAKVKDVLMGVSIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZF0</accession>
    <name>A0A6S7HZF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003755">
        <property type="protein sequence ID" value="CAB4000101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZF0"/>
    <dbReference type="OrthoDB" id="7303603at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="621" mass="70056" checksum="FE33D48F467980C0" modified="2020-12-02" version="1">MISGSSTRIQQSALKRAASFLQKSVLNFLEEADPLPWPPTVESLVSRERQYPELLQLFFKELFSFKGSHHVTAERVDRLTDSFCQDVIHAVSKGKFLTPKHASLGLGLHSMTGQKLPITILARLGHCITYDAINEIETAQAELVSTIFWWDNFDRNVETASGAGSIHNTPGIAFQEHSEAAVMKQDDISIPRSKRRSIQLPKETVDKRVAVNPKAEPPSLAKIQSRPAPTSAQMYCSKLLQIWKSVRYLNSANQTNPRFVGWIVRRFQQAHSKATLMTYLPPISSPITEYSTIIEMFHQSRQLAKLSNMSYTHITLDAGAAIKAFHVVWNNPAAWSDIIIHLGDFHSMMTFFAVIGRFVESSGFEDVLFQAGLCSSGSITGVMSGKHYNRCWLVHEAFSEALERRFVEQYLPTMPKKVEECAQSNLAQATSLTNILNDDTVKEYVDQCQIQKTKCLNGEFGKTPQFWAKYMELLDRQQKLHFSVNTNDYDLRMLIWKESLPLCFATNRVHYARYGTYYVSGLEGIDSTHPGARQEIEDLGLSVRRNQLGIGQSIDMTGEQSYMRNAKTAGGITQFAAKESTVTKWVMNRPYQTKFVESLLELSGVCTTMSNPRNVCEAVKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2C7</accession>
    <name>A0A6S7I2C7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021496</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007293">
        <property type="protein sequence ID" value="CAB4011866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2C7"/>
    <dbReference type="OrthoDB" id="5972318at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="697" mass="79369" checksum="2E0657C2607F0FA3" modified="2020-12-02" version="1">MWALENTIRNCLCLLKSVNTDAAQKVKKYISCNCGSPRALLMEFLGLGLGTKDNLNMAGLNQNPTALCRIFRTINVLGLSFTSVRSVADGVFRFVTGERVESPNPDRANAMELDDAMNFENFSTCIDNMNFMYPEIFSGVDSFTSFNEFCVKEDLSYSAVFVSERDTCRFCNGKLATNPVGKEVIVYHMTRGTYVGSRFTKNCRKCKVQEHYGFYNYGGKRMFNRDCLSKEFLLSTEETAIDLNLVRYLEEEIVHGALPFQAKANVYNSVHGYSKYEKCSDKSDCDEDERSCDPKRKRFKRNIAGKEKLLRRRCLDRRRLEEAFLLYAVLKMHFEYDLCMTHVDFDRNLLVEGVVEVFRERFIAKWTGHRCKVKGCGNVLVLDGNMKNARTVCACNSVGELQFDGIGGVVIGCPNTPGKGVRYCDTHVGLARTYIAEEDYINEVGKRSLSTDEDLVIRRITNSKLTRQGNLCEVEWSNGKMSWVKECDLPSGLQGKHCRNIVKAVDMIQFGKKIRMLVPNKSGEEAEDIVENSGFAIADEDDDEVGETEKRKISCGTLKEQHKAKNLKTAGCLAFMWPCGVIVNVAEMFKCESKSQVYGHVHNTLEMESMESVGTICYDDACHLLRYAQNRKRRDITNTSKRISGLNVVVDKFHFRNHVDKWCQLNCNPYKCEELEGVSIIHPIILWKRLWKEYNGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I597</accession>
    <name>A0A6S7I597_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007677">
        <property type="protein sequence ID" value="CAB4012906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I597"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="165"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="165"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="175"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="23735" checksum="EB71847E91191530" modified="2020-12-02" version="1">MEAIKDMPFPTDVQSLRRFLGMVTYLARCLPCVSDETKVLRKLTEKDAEQCWLIAHKESVVRIQRLISIAPVLAYCKETAEPGSYRKSDEEYGEKQREAKKYFDRQSRKLKTMKRLSAGDVIRMRCPGDSNVIGKVIEVIGFRSYLVEVNGRKYRRNRRHLRTTAEQLPLQTELSDADESLTDDESIDEPADVDAMGGQRDETWGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ID51</accession>
    <name>A0A6S7ID51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052215</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008158">
        <property type="protein sequence ID" value="CAB4014120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ID51"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="255"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="408"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="654"/>
            <end position="674"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="755"/>
            <end position="812"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="195"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="255"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="763"/>
            <end position="774"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="781"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="797"/>
            <end position="806"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="895" mass="101117" checksum="3D524707D5DB84D3" modified="2020-12-02" version="1">MGELSTLKYLKYGVHQGSILGPLLFLIYINDLPNCLQHSTARMFADDINITVSGKSIKEAEVAVNADLNNIREWLLSNKLSLNLVKTEYFLIGSRHNINTLEEQPRVFIGDEPIKGVQVTKALGVKIDQFLTWDSHIDQISKKISSGISAMKKIKDFTNSDTLNNIETTEIEKTLDTIHSKWVKYLKVHEDYSQLINNTRDLERLSIQRQSLERKINECNQLAIGQLNKSIRSLQRDSKFENGLHLKDDDKLSVSVQSSVSMSRSSKSRRSGGSSVSSRVKTAARSAELARLKLEQAERRAKAKEKQMQEQIERELQDLRDQAEYSQLEAELLAADQADERYSDCGSMRSLSKVVAGNRVNMKVEVKNSTPQDRAFYKTVHPSTRPELVKSPPESVVDSKQGIASLSEKCNDTEPSSPEFKPSVDKTKPDLTTTLLKMNQQLVSAMKQGTETTTVMKAMLQRQGIPKPQPMKFRGDPAQFPVFKKRVEVWLNEREFDEREKITRLLSFVEGDARDAIEHCELKSNGFSQAMKILESQYGHPSSVVKASLKRVTVGPRIERGDNNSLAKLRNNSRSCLEVLKDNENYKHEINASSNVERVVDRLPMHMQIEWVKKLPKIRDETKLNPTLQHVLELVEKQLRIMNDPQYGHILTTKRKPIDPKNRLPKPSPKPPLQNQISTLTTNLENSGLCPCCKGKHSLTNCDSFVKKTSEERWEIVKNLKLCHLCLASGHMKAQCISTTICKCKATYKHHPLLHRRISPPKDNSKFQSNDRESSNTTQRQPEKDKEKPETAGSESPKSKFGKDSQQDSMASYTTMTQGKENHVLLHVVPVKVLTKDGNSVTTYGLLDNASRGTIVDAKLAEKLNVKGTKQSIAVTTVLGTQECEFESGCRSRRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IE69</accession>
    <name>A0A6S7IE69_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nephrocystin 3-like N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081199</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004862">
        <property type="protein sequence ID" value="CAB4004302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IE69"/>
    <dbReference type="OrthoDB" id="5986860at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027897">
        <property type="entry name" value="DUF4559"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039:SF16">
        <property type="entry name" value="GPI INOSITOL-DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15112">
        <property type="entry name" value="DUF4559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="2">
        <location>
            <begin position="319"/>
            <end position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="938" mass="106476" checksum="6ACC4FA1421028F0" modified="2020-12-02" version="1">MAHSRLSDPQYRNWVTVGRAIQITRNGLETIIQNAADKYHTSLLATLPNNVHAWESRLKNAHRSHDKRKISWSNSDNTQWLTVGASWEIAKIFMAPLGPRKFDVVNAKTTDISGLLNVLEWSPRGTNGMFNTGVELSKIAAARSARNDWAHAPLLHVSDAEKIDVFASLTSLLQDPELNGDKDVQDAMKELSSLSHTGLAVIEEKEFELLVQLERQLGQDMVSLGSDMSCWKDEVGANFEQIKDQMKGLDEFVKKNELKAVEKRINHLDDSTNSRLKKLEAMSESQQLSCEVKQELKFNPVSDRMKEEFVGRGWLFCDIEKWLEKDLEPRESRAFLIWGGAGTGKSSFAQEFVRRHEGEKLAGYHYCQKDNPRTCDLKSLVDSLSTMLSKSLPEYAALVEKLQTDQFRDNPNALFDLLITTPLQQLNENTRHFLVIDGLDEGGAMIASCFARLSGALPSWLRVILTARHNSPALSGLFLNSTSAKLDQFETSLESLSSKDIRQFVSMKYRKLQTEFNCIPFFFANDEQVGQEKIVQASQNCFLYAKLVMEHIFDGHNEIGLPASLSEIYCLDFRRHFSDIKFFEKKVAPVLQIVLAIQSAKAFMDREIGIKGELDFATSHPFLVVEGEIIRLQKIQQAYEESDESVTGVVKCGLLPEIKMHDLNKVLKLLSGYLIKDDSGKYYFSHSSVRDGCKTKSQISFAIESGSSNVNVLISELGIKAIDLLHAAFHHSGDARDYFICSEYMAMKVLDETDVLNKMTIQEKAEHLEWALLLRSARITAKLFDSHTYWIFSGMAILRLNFRIKLLQLVPKESMPQLFFSSLLVYRKVVDGFVNDEIFEFCVKNGLTADVCVPQFFKNTNGFDSSICWNEDVQEYFRKLKSGEENVISLESLKEKPFYPEEAKVSEFTFEIIQKPLSGIDYKYSCKSVGVQRHKIIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJ59</accession>
    <name>A0A6S7IJ59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATP-dependent RNA helicase DDX3X isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A063639</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the DEAD box helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009480">
        <property type="protein sequence ID" value="CAB4017293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJ59"/>
    <dbReference type="OrthoDB" id="196131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18051">
        <property type="entry name" value="DEADc_DDX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000160">
        <property type="entry name" value="ATP-dependent RNA helicase DDX3X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47958">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE DBP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="1 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00047984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4017293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="500" mass="54916" checksum="C7DBF75A1AA77A4F" modified="2020-12-02" version="1" fragment="single">SKGYNRSASYERGGGYGGNNYGGGGYHAGGGGGGGYGGGYSGNNYNNFGGGGGGGRNNYGGGYGRRGGGGGYKDRNYDSPKDAWMSVPPAEEWGKLLPRNERTERELFAACNTGINFDKYEDIPVEATGDKCPAHIENFADCTNLGEVITHNISLCHYSKPTPVQKYAIPIIKDSRDLMACAQTGSGKTAAFLIPILSRIYEEGPPAPPDMKHLGRRKQFPIGLILAPTRELAIQILDEAKKFAYRSHVRPAVVYGGADVGQQMRDLDRGCHLLVATPGRLVDMLDRGKIGLDVCKFLVLDEADRMLDMGFEPQIRRIVEQDTMPKTGDRQTLMFSATFPKEIQILARDFLSNYIFLAVGRVGSTSENITQKIVWVDDVDKRSFLLDLLNASGLFARTSKACCTISDFDFENQMIMLNELRLQYDRACAANHYPSLSSLTLILSIVISNAYRIEYVVVFIITACTRVVGVNISARGLFYIVYIESRHCTTCDVIGWLSRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IM57</accession>
    <name>A0A6S7IM57_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="16">Ataxin-3 homolog</fullName>
            <ecNumber evidence="4">3.4.19.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="17">Machado-Joseph disease-like protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A069422</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Acts as a chain editing deubiquitinating enzyme that binds and cleaves 'Lys-48'-linked polyubiquitin chains, with a preference for chains containing four or more ubiquitin molecules thereby modulating protein degradation by the ubiquitin-proteasome pathway. Probably by regulating the IGF-1-insulin-like pathway, regulates lifespan. Regulates germline DNA double-strand-break repair and apoptosis in response to DNA damage by recruiting E4 ubiquitin-protein ligase ufd-2 to DNA repair foci. Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).</text>
            <dbReference type="EC" id="3.4.19.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="15">Forms a complex composed of deubiquitinating enzyme atx-3, adapter ubxn-5 and cdc-48.1. Forms a complex composed of deubiquitinating enzyme atx-3, E4 ubiquitin-protein ligase ufd-2 and cdc-48.1. Interacts (via RRDR motif) with cdc-48.1 (via N-terminus) and cdc-48.2 (via N-terminus); the interaction with cdc-48.1 is not required for atx-3 enzymatic activity. Interacts (via C-terminus) with ubxn-5. May interact with ned-8.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.12" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020005654">
        <property type="protein sequence ID" value="CAB4006951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IM57"/>
    <dbReference type="OrthoDB" id="10063692at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.70.40:FF:000005">
        <property type="entry name" value="Ataxin 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.10:FF:000018">
        <property type="entry name" value="Ataxin-3 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.10">
        <property type="entry name" value="S15/NS1, RNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033865">
        <property type="entry name" value="Ataxin-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006155">
        <property type="entry name" value="Josephin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003903">
        <property type="entry name" value="UIM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14159">
        <property type="entry name" value="ATAXIN-3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14159:SF0">
        <property type="entry name" value="ATAXIN-3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02099">
        <property type="entry name" value="Josephin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02809">
        <property type="entry name" value="UIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01233">
        <property type="entry name" value="JOSEPHIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01246">
        <property type="entry name" value="Josephin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50957">
        <property type="entry name" value="JOSEPHIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50330">
        <property type="entry name" value="UIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="10" id="KW-0788">Thiol protease</keyword>
    <keyword evidence="12" id="KW-0804">Transcription</keyword>
    <keyword evidence="11" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="8" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="187"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="227"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="18">
        <location>
            <begin position="235"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00060106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00063584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00069055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00082365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB4006951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30469" checksum="C9C4E7B61BE066DC" modified="2020-12-02" version="1">MEYIHFEKQEGSLCAQHCLNSLLQGPYFTPVDLAQHARELDEAERQTMAEGDINSADYVKFMNQPSSNMDDSGFFSIQVICRALEVWNLTAIPYSSPNVESARQNPAGEKAFICNLQQHWFTIRKLGRQWFNLNSTASGPELISETYLSLFLTQLQNEGYSIFVVRGVFPDCESDKILTLLPVDPTKVKSTSTRGKSKNVAKNNDTKTLEPKQVDVDEVRRKREQFYSARFNNDSGTSSSQTSQTITSPSQEETEEEMLQRALALSLTQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INX1</accession>
    <name>A0A6S7INX1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Proline-rich transmembrane protein 3/4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A083498</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010011">
        <property type="protein sequence ID" value="CAB4018450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INX1"/>
    <dbReference type="OrthoDB" id="10066605at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059081">
        <property type="entry name" value="PRRT3-4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25987">
        <property type="entry name" value="PRRT3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Proline-rich transmembrane protein 3/4" evidence="7">
        <location>
            <begin position="2"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF25987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4018450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="32180" checksum="4702796F20C79B19" modified="2020-12-02" version="1">MKGKWHLAYEVHRVFFGTAFLLLTCSCLRAMIRATNTTPLFTKSRISYAINAVLVFFTLSRALALLLHGYINDEAILTVFALDEFLLNIGFPCLIAAYTRMIYPWLEYLKHRVRRVFNILIVQCYIFILAGIAGTTYNQHVSLYVKLILPSCSILCALCAFITYAKTFYSNSSNDIEKSNGLTVGIINTTSCETAANDMNERKGTTEENIVTVSISCICIICFVIWGCIVSGNLKRWESDIYVESWYSWMYANVLRMIELGNAAIMSHLVQRVTLKQKFPLQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IS93</accession>
    <name>A0A6S7IS93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Probable helicase with zinc finger domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A078942</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:13066"/>
        </physiologicalReaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006139">
        <property type="protein sequence ID" value="CAB4008491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5956173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000932">
        <property type="term" value="C:P-body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000175">
        <property type="term" value="F:3'-5'-RNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056787">
        <property type="entry name" value="OB_HELZ2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001900">
        <property type="entry name" value="RNase_II/R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022966">
        <property type="entry name" value="RNase_II/R_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050180">
        <property type="entry name" value="RNR_Ribonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047187">
        <property type="entry name" value="SF1_C_Upf1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23355:SF9">
        <property type="entry name" value="DIS3-LIKE EXONUCLEASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23355">
        <property type="entry name" value="RIBONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25049">
        <property type="entry name" value="OB_HELZ2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00773">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00955">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01175">
        <property type="entry name" value="RIBONUCLEASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="3">
        <location>
            <begin position="144"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="RNB" evidence="5">
        <location>
            <begin position="1327"/>
            <end position="1681"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="4">
        <location>
            <begin position="2132"/>
            <end position="2410"/>
        </location>
    </feature>
    <feature type="domain" description="AAA+ ATPase" evidence="3">
        <location>
            <begin position="2149"/>
            <end position="2392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="770"/>
            <end position="794"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="832"/>
            <end position="862"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="770"/>
            <end position="779"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="832"/>
            <end position="856"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="2419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00048432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4008491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2419" mass="272347" checksum="7E9EDE5F9F44997A" modified="2020-12-02" version="1" fragment="single">LHSTPSMKDYESQHPLVLHGKHYLSTLIIQSEHKRLCHAGPKLTLGSLQDTYHIISARRVVRKLIHRISSKANYQTSRRKHSLPHFVVLFLEEENPCRFGAITRLVFDMILSSLKTIVHQLVNGLLLESQSKRMRRLLARQLKASPPVLLLGPFGTGKTQTVAEAVKVLISQQTQRCRILICTHSNSAADHYIEDYLHPIFKDKDERNSLCEKPLRLYWEHRLAASISDTMLPYCIMDLNTGTFRNPTLEELARKTIVVTTLVTADMLIKCGVEPGFFTHIFIDEAAQAMEVETLIPLSLATEETKVVLAGDHLQLSPPVFSSIGRKLLLDKSILVRLYETYPANSPRKILLLENFRSFPEIVNIPSKLFYEGSLVSKKQLPGDLQYPVKFYGVHGLEERARDSPSYVNMPEVAEITERVEEMVNTWPKQHFGELKLEKACVLSAHYAQIRQIRRELRVHGLSAVHVENVNNVQGLEFDVLFLSTVRTSRMLGPGQHEGKDLGFLSNPKLLNTAITRAKFCLVVIGDPKALCSVGDCRVCWKTILSLCSENGTFHYRVPLTQVLSAIREELTHTVPPGFNSSLQKPYQRLHIAPPISKEFPLFPVQMGAFGQVPPVTSMTLPLHRPGLMSPIIPATLSSPLDYQSQVRPPAASYNPIVRNHITGSMANIYTPSEVHFQPTSPQKATPPGVHASAPSYSHIVANHFTNRMGNIYSEREVKFQPTFPQRAALPTPHYPSQVHVPAASYSYMAENHINDSTRNVQASTEINLQSTSSESASLLTPRDDQAQTPAPAASYYHTVGNNVTDTMRNLKPPSEESWQLTLTERTALPTALSTESALPSSGDSKNHHFNQNRSFNPFGYNELPGSANGLDGKAPGNECSYPGNIFEESCELTLPATQNISPTASEESPILSLCQTLRHNIANSLRNITVSEEAVNMFIENPLEDISVEIKENLVSQVSLLQQQKSSLEQQQVLNRTLAKSIRSFQERSKQVNINAVKDRVLIEHYLLKPSPRLTHVHKINLDSDNEVQEWYRLRRQDPIVQDYIKSFEMLSERARTRGNQDNQMTESCDISDGGNTNLAQSLRGWVLQPQSVVYPSGNSLYEEYLSTEEVAKKLQNGELVSCTLSVDRSSSGKSATCVVDDPLEKNILVPDRQNMNRAFNTDYVAVEITQDLEDQHLREGKVVAILQERHHRQVVCRLASSESTVMIPLNNTNPKLSILQSDNHVGQTGVAVFDTQGDQIHFQHFVSDVQDKLFLVQFLKWDVSYRYPLGFVAKCFDQYSDLNSLIPILCYDYGIPNSFPVADSEETEARFSQSWQIPDVELKSRCRYEDAFTIDSEGAEELDDAISVRPVKYGIYSVTIHVADVSYFVSKGSLVDKTAQERATSLYVTPPSNLSLTLLPKRLSHICSLLPGKERLAVSVEFVIDSNGNILRSPIFRRSIVVSQRQLSFEEVDGFLSGLEMAASRTSSSPLLCSLQVLYCLSRELWARRVRAGSFQACTEVSMQSTSRRIVEELMIITNMAVAEKLSKFPDSHAVPFRVQQLPKYSALQSLASWAADNDLNLNEMWLTQFLTGYQEQESLHSSTVCLDLRIWQDICQEVKIGNMADLTEEILSLHKNSSITTRLQRKLPKSKYVSSNQYSSAERRHFALNADCYTHFTSPIRRYFDIVVHRVLFSETTAPLYDDREMEELCNTLNVRCGNAAAFSKQYSVVCEAESLRETDGWRTMEIYSMEVDYMTLKNVEDINNSSLQKVKVNDMGATMCHDEVKQFVACWTLHNVDLSEEHSTEHNLLGNRFQAPPAVLKHPSSAGVVTQDLKGHTPLQPALANKIFQQRRSQDLETKTVLEIPTKLWCELLRAIKKEDIIPMVKSMENINKHAIVVNNKPSSERNDGISVTINTSGCNVVKRTFECGDKLQVLFACSSTTSLPQPLLQAIQVVPENICCIQHHRQPVECFCEKAKVPSRERYSSVEEYQRINIPLLMMESAERSVRAGLFSINLKDVVMKWTKDTSNVIHGHFYIPVGRLSPSIIIHKNDFVCISTAQVISHGCIEDVVALTGSGHHVQLVLNSACTADLPGTVNIEVIPQCVNYRRMITAVRNLPQSTEDVRSLFLTRDLYSPVKKSRTKRSFTSSFTLDPSQRKALEKAIHSSFTIIEGQPGTGKTYCAAAIAEQFFLENSYQKPFANVLLCSPTDQAVDDAENILSRVSTVRVLRSYDREIEAESFPEIAAVYGVHPRSSATDRILQESALHFRIRSNSNPFHRKILKYAQQLQNMLQESKAKGGNKQQLCRIIEEYKKLVDMAEEYELTESGVNIVLCTCIEAGSLRIQKHARIKQCIMDESHHCLEAESLMVFQTLSTRCERVVLLGDSRIEAGPIIENKLARRFGLNRSLFHSLRSARGKTRLPKLILDVQHRILGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ITM1</accession>
    <name>A0A6S7ITM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sarcoplasmic calcium-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067148</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011228">
        <property type="protein sequence ID" value="CAB4021023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ITM1"/>
    <dbReference type="OrthoDB" id="427950at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20235" checksum="93EFB3226B1F28F6" modified="2020-12-02" version="1">MSELRTNAFYLKKLYRAAQVTDADKDGVVTRADYDLMIKRYNELGMPEENKQELSDAMYGMCGSLGLTDHTKSLTYDEIVQSWIDNVEKGVGFATIVYDKIFRIVDTDRNGSISLKEWEIHCMAINIPVEHAEPSFKAMDTDGDGVISHDEFVAYHYEYFHTSEDKLHSSLLYGPLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IV79</accession>
    <name>A0A6S7IV79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039582</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005272">
        <property type="protein sequence ID" value="CAB4005678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IV79"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="17469" checksum="6A2A39098DD3F807" modified="2020-12-02" version="1" fragment="single">MAGDVDIENIEFHSCLIHFEDVRQSTSLISQTRLNKVISCRKRWINLEGDKASLCRKSHELFSDEHLFAREKWYMHENCYKRICDENKIKKAEEKFSSTQLEASNDQRQRISTRHKTSCHNAANQARNQYVLPVQCIICEKDTDQFVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWE9</accession>
    <name>A0A6S7IWE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062334</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011812">
        <property type="protein sequence ID" value="CAB4022116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWE9"/>
    <dbReference type="OrthoDB" id="5989551at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301:SF11">
        <property type="entry name" value="GIY-YIG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="25028" checksum="CDF48F1EB3E47D95" modified="2020-12-02" version="1" fragment="single">MDKAKYTEQVNEMLGDQTVYTRITDKRRNPTKRTETDLENILKELRRSGNITDREYWQLRAFDSSPATFYGLPKVHKVSLICNQDHYTLGESSVDVIPLRPINSNIGSPTYSLSKYLAKLLKTFCAKNEFSISNGKEFADFAKSQTLGTDETIVSFDVVSLFTSIPVPFALHIVQKKLKETDSWKSHTALKEEQVVKLLKFLLNNCYFKFNETHYHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IX37</accession>
    <name>A0A6S7IX37_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025653</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011597">
        <property type="protein sequence ID" value="CAB4021750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IX37"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="126"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="17786" checksum="9E29A8A93CB9DA41" modified="2020-12-02" version="1" fragment="single">KTIVKETTQEQSTSVNSTPEQNTSGESNPEESAMEQNSSLEKNTSEQSAREQMSSKQSIPEKRTPGNHPVLLTSPLVYTPQHVLWKLPNLLWKPGNLVNSSSLEKSKTGYAGLETGKTDSTTPEMIASTSSAGSSGIQQRLSAEEQAQDPLGKAKKKREQDNDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYT6</accession>
    <name>A0A6S7IYT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041863</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006825">
        <property type="protein sequence ID" value="CAB4010551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYT6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="entry name" value="Serralysin-like metalloprotease, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="241"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="297"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="323"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="377" mass="39261" checksum="AE3A39FCDFE9CC7B" modified="2020-12-02" version="1" fragment="single">MFLTLTTRFLSVSTRFLSVRTRFLVVRTTFVAVRTRFLAVRKRFLALTTMFVPLRTSFLPLRTRFLAVRTKVPGGEDKVAGGDHKVAGGEDNVPAGEDKVPGGEEKVPGEEDKVPGDEDKVPGDEDKVPGGEDKVPGGEDNFPGGEDKVPGGEDKVPGGEDKVPGGEDNFPGGEDKVPGGEDKVPGADDKAAAAEDKLSAVEVPGGEEKVAGGEDKVAGGEDKVPGEEDKVPGGEDMVPCGEDKVPDAEDKVPVGEDKVPVGEDKIPGGENKVPCREDKVPAGDDKAPAGEDELSGDEDKVAGAEDKVPDEEDKVSGGGDKVPGGEEKDSDAEDKVPDAEDKVPAAENKVPGGDAMFLAVTTGFPVRTIFVADNVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J4Z4</accession>
    <name>A0A6S7J4Z4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P2X purinoreceptor 7 intracellular domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044858</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012839">
        <property type="protein sequence ID" value="CAB4024100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J4Z4"/>
    <dbReference type="OrthoDB" id="5985950at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="38"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="105"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="23813" checksum="ECF16FB38CE364FC" modified="2020-12-02" version="1" fragment="single">MENIHENQRGEVLPYQFEPEPAAETSDISDDSDAEQSSDEASSDEYADHEFERANAWRLQDISWCKCGHCTKSTKAVECFCCQEKALEYDEYEVLLDQTEAQGEKCLTRHPEFIENMLSESVLKIDVCQYLEENWPLDDGDLEKMHKLYRLVAYRRCSRWVFQILGKGKRRPFPSCVYSKIRERFASCDGIYTHFKYAKTSKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JDL0</accession>
    <name>A0A6S7JDL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075417</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015280">
        <property type="protein sequence ID" value="CAB4028154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JDL0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12853" checksum="66F809791A358B05" modified="2020-12-02" version="1">MARLFEDLGKIMVESWEDCPRSWWNLSKIVQDHGGILARMSRSITILPRFYYTLAKIVIRSFFSKDHGGILTRSSNILTRLQYRILALDFGKILARSWWNLAKIVQDHGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFQ4</accession>
    <name>A0A6S7JFQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A004973</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016301">
        <property type="protein sequence ID" value="CAB4029628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFQ4"/>
    <dbReference type="OrthoDB" id="5988707at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="62"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4029628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="265" mass="30973" checksum="50E8C375A5A716D6" modified="2020-12-02" version="1" fragment="single">MATRQHASKHSAQNSNISNPCTPNKTVKTKNQKSNTPESKTTEEQEGQSNEMSEIHDMFAMMMKKLEKLDSIETKLNNMEINMAEIKESLEYAHAEIADLKKENEYSKENQAQAREKIEILERDNKTLRDKIIDIQARSMRDNLLFFNMPESEKENTTEMIHELLESKIGIADARNTVKIDRSHRISRKRDGDRKPRPIVVKFNYHQDREFVRLNAKKLRGTRIGISEQFPEEIENIHKTLYPELKKAKLEGKRAKIVRDKLIIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JG21</accession>
    <name>A0A6S7JG21_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">[heparan sulfate]-glucosamine N-sulfotransferase</fullName>
            <ecNumber evidence="4">2.8.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A052628</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan metabolism; heparan sulfate biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Glycan metabolism; heparin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the sulfotransferase 1 family. NDST subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.2.8" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020015152">
        <property type="protein sequence ID" value="CAB4027960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JG21"/>
    <dbReference type="OrthoDB" id="5961988at2759"/>
    <dbReference type="UniPathway" id="UPA00756"/>
    <dbReference type="UniPathway" id="UPA00862"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019213">
        <property type="term" value="F:deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015016">
        <property type="term" value="F:heparan sulfate N-sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015012">
        <property type="term" value="P:heparan sulfate proteoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030210">
        <property type="term" value="P:heparin proteoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021930">
        <property type="entry name" value="Heparan_SO4_deacetylase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037359">
        <property type="entry name" value="NST/OST"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10605:SF56">
        <property type="entry name" value="BIFUNCTIONAL HEPARAN SULFATE N-DEACETYLASE_N-SULFOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10605">
        <property type="entry name" value="HEPARAN SULFATE SULFOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12062">
        <property type="entry name" value="HSNSD-CE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Heparan sulphate-N-deacetylase deacetylase" evidence="11">
        <location>
            <begin position="2"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfotransferase" evidence="10">
        <location>
            <begin position="131"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF12062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4027960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="46968" checksum="1B90B58C18E0C029" modified="2020-12-02" version="1">MGIKVLPRQTCNIFTSTNFFREIEGGKPTLDHTVEGGEIFETVLRNPVSIFMTHMTNYANDRVAPYLFKKLVKFVQRWTNLKLMSAPPKKLADIHFRIFPDEVTPVWQNPCDYNRHLAIWPIDKSCSRLPSLLVMGPPHGGHELLGKFLQVHPRMKGAEQDSNGYVETNFFSSDNYLKGLDWYMNFFPKQTELYEKIFEVSSTYFESSVASHRANALLKIAKIIIVLPDPVQRAYKHYMYLKNRISSVAQKYSFEDFIMKKTKSNEAKTLRNQLLTTGHYANHLTRWMSYYSAQQVMIISDDDLINHTRTVLDNIQDFVNIEKPVNYNQLLRYDTRVHMYCPLNTNTVEDCYGYKDRHCSEMSKTAREYLENYYEKHNKNLLRLNQKVQFSVPKWLKVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGU5</accession>
    <name>A0A6S7JGU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014788</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016585">
        <property type="protein sequence ID" value="CAB4030038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGU5"/>
    <dbReference type="OrthoDB" id="6156608at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="325" mass="36615" checksum="B62AA752811F4933" modified="2020-12-02" version="1">MAVEPKQAEAPNVETNKLSLSLFRRPDKFKIGEDFDLFIKKCELYFEAVELEDVKKRRLALLFNLSEDAFRLAEPVEFGEGENAYKDWIGKLKSLFESNQTVRRNVTISNRREQELGEYVDSYAVSLREAGARCGFHGDEYSSRLVDQFILGLRDKATQNKLLQGPPNSLDDALLIARRFEAANATMKTLAREATEKLSRTTIGSVSSLNAAKTCYPFSKDQWQPLKLDDTPLFPSDIVAEAANNSPIGILGKTTLNVQFDESNKSSHDFYVANEMVSEIILGLDWLVTNKINVDMSEMDLKFPDGTTKPLCLFDSTIADPWALF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JI41</accession>
    <name>A0A6S7JI41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052781</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018123">
        <property type="protein sequence ID" value="CAB4032095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JI41"/>
    <dbReference type="OrthoDB" id="2436455at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="799"/>
            <end position="824"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="847"/>
            <end position="911"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="48"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="110"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="426"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="802"/>
            <end position="812"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="813"/>
            <end position="824"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="847"/>
            <end position="857"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="878"/>
            <end position="891"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="900"/>
            <end position="911"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="911" mass="104999" checksum="63E2FF2607C85B22" modified="2020-12-02" version="1">MQMTLDDVCKEKKSLVEENASIKKKVKEYIALASEMFTADNDVILKENSSLKDNFKELESLKRNIEALQSSLRLAHEEKMSAMKDNIAMKEQIRELEPLAKESTILQDHMTGVNEKLQTLKEENILLEKQAQQMISLSEEMSDLRNALCISNEEKQSLQEINSSLKDELAKLKVDSGEYKVLENRFEGMNEETLFLKKENADMIKQTEFLSSQCVNLRQLLDVVSKDKLALEESNSFLKDAVAKPKALSEEHKVLKRDFNVLNEEKLLVEKENTDLKEKLKYTEHLLGECAGQRQVLDESSKEKVSITEKNALFTEKAQNQVIPPMKAPDNGNVVIIETKLQALLMSKLDEIMSKLKVACKQDKHISVVREDDIINIEADLAECYAKIADQYTKHKQKINDHENCLEVEPRIKEQQRAALDEMISNEEMDSKIQELQSKMFLLQKENENLKEFQEKSKEEILTERAKVEGLEKNLTASEAAMEKLNDNNVELELRMLSVQDQINQLQEEKLKMKDYIPQVEAKVVDLDKKLSEEEFISKRLAVEVRSLEAQLAYADRQLRHKIETEDNQKVPRRNYVNPSSQNVRKMSLVAEETSSVTEKSISITEDSSVADDSKISELSIMSENKDVSVGNSQEHVNNTSMLCKSKNEERVDNINMLCQQEEILKKLRRRSAVYSQKNSRKSETNDKRRSTIGTESFVVGQFSNTVADEPDEHDYEWDRILELKERNSICARHLRSSYPVETQVHLKEEVEEEDLKSGRYATTQFRKRLRDNVSDSSIFTTFDTTRCLPRSKSENAFGKLNSRESNDENEHLLSSSSFPDQENLENIEQYNRRESIAFKVDITPAKKPRMSLRPRMPRAFGTEKKETVRNKSKMKPAQQTSKKFTLQRKPSSVKEGGKKPQRTRRTNLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JKU7</accession>
    <name>A0A6S7JKU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Mitochondrial carrier homolog 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A038488</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion outer membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the mitochondrial carrier (TC 2.A.29) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017945">
        <property type="protein sequence ID" value="CAB4031857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JKU7"/>
    <dbReference type="OrthoDB" id="10253709at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005741">
        <property type="term" value="C:mitochondrial outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.40.10">
        <property type="entry name" value="Mitochondrial carrier domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023395">
        <property type="entry name" value="MCP_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018108">
        <property type="entry name" value="MCP_transmembrane"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10780:SF18">
        <property type="entry name" value="LD43650P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10780">
        <property type="entry name" value="MITOCHONDRIAL CARRIER HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00153">
        <property type="entry name" value="Mito_carr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103506">
        <property type="entry name" value="Mitochondrial carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50920">
        <property type="entry name" value="SOLCAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="5" id="KW-1000">Mitochondrion outer membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="9" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4031857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13733" checksum="9B05BFF3B16BBE68" modified="2020-12-02" version="1">MAASSSKDDIRRANYASILISASMTAVTHPVQMTKVMIQVGFEPVKPTPYKTLFGKDMYKLPGLFTYASVVYHTDGVLGLFRGVTPRILSAVLNSTINNTLLQKFHSHEEKDEADQVDFYVLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JT90</accession>
    <name>A0A6S7JT90_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037647</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019161">
        <property type="protein sequence ID" value="CAB4033334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JT90"/>
    <dbReference type="OrthoDB" id="6013577at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="27616" checksum="01BA63566D671E82" modified="2020-12-02" version="1" fragment="single">VRDLFRIHKIKNHKNAAEIGRTVLEGLPDGNRLKPVVWAEHKERQDCYGVSLGVRPFLRPLYLYIKMNQLRNVENSDDGVKLKHVNAFQSVKRRRIRFVPSDKSPYKGNENKPKVKPPCVSCKIFFKGFKKKKSNSLPPFANCAEYDVIRTPNLDYVLRYNEGTKHWINFKSACEKHFKAFNELTQKLDEPGNSSQNEILETYYKNTLNAKILKYQWVNFYGRYKLVVKDNCKATV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZA6</accession>
    <name>A0A6S7JZA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076422</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022086">
        <property type="protein sequence ID" value="CAB4036481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZA6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13392" checksum="93927450A027392C" modified="2020-12-02" version="1">MLEKNREAIVVDVQERFDDDVSEISDTLVEKAEAEDKITEQEKRELAGLDHVKGSPKERLIVLAIELQNYKDKLKTETDEKRLKVFRAAKDLVESRIDEARVEMNLKVHGVYAHTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1C0</accession>
    <name>A0A6S7K1C0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Allene oxide synthase-lipoxygenase -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048821</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021091">
        <property type="protein sequence ID" value="CAB4035480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1C0"/>
    <dbReference type="OrthoDB" id="6067698at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.180.10">
        <property type="entry name" value="Catalase core domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01477">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11766" checksum="27138A99F2AC778C" modified="2020-12-02" version="1" fragment="single">KDGAETKKFSLDKFFHNDFEKGETDTYEVSGDDVGAVVMITLNNNGMGVKSDWYIAKVSVEKELKGGNEKYEFPCYRWVVHQLVVFEGKGKITYLLYKMAPQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4V0</accession>
    <name>A0A6S7K4V0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Multidrug resistance-associated 1 isoform X12</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A042529</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023377">
        <property type="protein sequence ID" value="CAB4037694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4V0"/>
    <dbReference type="OrthoDB" id="8948161at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF443">
        <property type="entry name" value="MULTIDRUG-RESISTANCE LIKE PROTEIN 1, ISOFORM I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4037694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="26497" checksum="085FCD92D50FAA7D" modified="2020-12-02" version="1" fragment="single">RLYVATSRQLQRLESISRSPIYSHFFETINGVSTIRAFGVQQRFISLNDVNVDENSMVKYPVILIHRAVAAFRASGSIHPVCPTHQKYAKLCVVKDTMKDNYGRPFFVCSERKNPCKFWQWGDVFEGPRPLCQHGMVCCERKVKKDGPNQNRLFYCCPKDDSCGFFEWKQQGPRVTNTGIVLFSNPLQYQYMIEETGETFNSSKSNTKEAYDEFRRFGLTSELDKIDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7V9</accession>
    <name>A0A6S7K7V9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023655">
        <property type="protein sequence ID" value="CAB4037960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7V9"/>
    <dbReference type="OrthoDB" id="5975877at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="24539" checksum="A8B5091482885547" modified="2020-12-02" version="1" fragment="single">MALGGLQSVRDALILARHEQCISDTEFVLLFEYNLSKPLFPYWKFELFDLDSWDDEECKIELRFAKSNLALLQRLLGIPEKITCQQGSICSGIEGLCIFLKRLAYPCRYPDMAIRFGRNPTEICLIFNEVLDLVYDAHHHRLESWNQPFLSPELLQNCADAVHDKGAPLENCFGFIDGTVRPIARPKYYQRQMYNGHKRVHSIKFQSVVLPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KE69</accession>
    <name>A0A6S7KE69_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NmrA-like family domain-containing protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A041780</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NmrA-type oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026671">
        <property type="protein sequence ID" value="CAB4040350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KE69"/>
    <dbReference type="OrthoDB" id="300709at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051164">
        <property type="entry name" value="NmrA-like_oxidored"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42748">
        <property type="entry name" value="NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42748:SF7">
        <property type="entry name" value="NMRA LIKE REDOX SENSOR 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA-like" evidence="4">
        <location>
            <begin position="2"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00040296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4040350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14266" checksum="91543ECCAA733051" modified="2020-12-02" version="1">MIEKAGSMIWNSVRMPAYFNNFLTAMQPKKLDDGSYVLAVPMEGKPMYAMDVGDLGGCAASIFNEPENYGGKIIGVATDCITTEQLCDALNKVLAPRVFKDAKQTADQMAKFGFPGAEEMASMFKLYQKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KKJ0</accession>
    <name>A0A6S7KKJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035766">
        <property type="protein sequence ID" value="CAB4044668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KKJ0"/>
    <dbReference type="OrthoDB" id="7424441at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="13144" checksum="E3BC11C3812761B0" modified="2020-12-02" version="1" fragment="single">MDKCKTFGIKHNGRRSTQYKPYLKVNNEMIPPVKIDGSFRYLGKMFSCTMGTDEIRNELEEELTSYLDKVDKLPIHPKNKLLIINKFVYNKLRWRLSVYHLSESWATKSLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KPU7</accession>
    <name>A0A6S7KPU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087851</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015855">
        <property type="protein sequence ID" value="CAB4028972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KPU7"/>
    <dbReference type="OrthoDB" id="5984248at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14865" checksum="01D0A6E9C45FEF4F" modified="2020-12-02" version="1" fragment="single">MRGNLIFHNIEERPEENTTTIIHKLLEEKLNIEDASSKVKIDRSHRLGKPRRETDKPRPIVAKFNYYQDKEHILANAKKLKGTNIGISEQYPAEIMETRRKLIPEFKKAKAESKRVKLVRDKLYIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KXY0</accession>
    <name>A0A6S7KXY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tetratricopeptide repeat 28</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A009302</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018524">
        <property type="protein sequence ID" value="CAB4032593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KXY0"/>
    <dbReference type="OrthoDB" id="10072345at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="149"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="341"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="227"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="149"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="186"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="343"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="368"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="381"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="521" mass="58054" checksum="4A00DCD1020924B0" modified="2020-12-02" version="1">MNMMGASSTVSNILYSYFNIKRSKLIWTGSLETLKAFVLTEIDEETAETTTWRSPSGGKWLFDSKLLSVTWLTKSQNIYFDGEKGSDLMERIHSFLKQDPDNASEIANPAELDLERSIESLLADDSDDVTDDTFEESFSDQCDIAKELKNQEEKQGSIDSETSTKHDESNTKSKNLHEESIGLYTVTKSGNLQTKSTNRHNPLGSSASCNRDSAEISRLNSKLDRFSENVTNKLQNLSVEINNIKENKPYSILVLENVVNDLKEDKLVLIRKNDELREQNMDMSHIISELKMANKNLESEKSSLLTALKLIQNDHQQTCTKTIVENDGENNVELVCETIEGSEVTQPKPSSNQPANDKHLNTEASTGKNRKKKGKKSKSKPPTQNSSQQTADVDTSGGIVNTSSFKSTGQGKKTVVIAGDSIVKNTIGPKMSADDPNHHFIVKPFPGATVSDMEDFVKPLTRRTPDKMILHVGTNDLRSHSTPKIIADSIVNIVTQIKEDSPALDLSLWRRYLVMKITAHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L775</accession>
    <name>A0A6S7L775_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A061558</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019614">
        <property type="protein sequence ID" value="CAB4033862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L775"/>
    <dbReference type="OrthoDB" id="439808at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd21608">
        <property type="entry name" value="RRM2_NsCP33_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048289">
        <property type="entry name" value="RRM2_NsCP33-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003954">
        <property type="entry name" value="RRM_euk-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052462">
        <property type="entry name" value="SLIRP/GR-RBP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48027">
        <property type="entry name" value="HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00361">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="63"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="71"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="86"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="139"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4033862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="16229" checksum="FC0717CC6E6A079B" modified="2020-12-02" version="1">MGEPCKVHVGNVSFNATEEDLREVFEKYGRVEKVIVVTDRDTGRPRGFAFVIFEEQEDAKAAIDGLDNTEVDGRTIRVSESRPRSDGGGGGRSSYGGRGGGRGYGGGRGRGYSGGGGGRYGGGGGGSYGQRSGGDRYSSGGGGGYGGRSGGGSRYDSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LL20</accession>
    <name>A0A6S7LL20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001802</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023836">
        <property type="protein sequence ID" value="CAB4038122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LL20"/>
    <dbReference type="OrthoDB" id="2371919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="27235" checksum="C9BD1C5DF222DE22" modified="2020-12-02" version="1" fragment="single">MTLHLPDYKVEAIKADCNDLLARHEVSVRELSQLIGRLTASIQAIFPAPLYYRHLQHLKHQALAQRKGYDATIALSREAEEELHWWLAHLNAWNGRAILHPSPDLIIETDASMRGWGAVCQGVRTGGLWSQMEQKLHINCLELLAGSFAVKSFTKDRLCVHVRLRMDNTSAVAYVNRLGGTHSLVLANLALALWEWALNRNIFLSAEHLSGRLNTTADWQSRHFDDSSNWQLCPEVFRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LP57</accession>
    <name>A0A6S7LP57_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003270</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021862">
        <property type="protein sequence ID" value="CAB4036279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LP57"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="66" mass="7503" checksum="D559EB8227FEDB15" modified="2020-12-02" version="1">MDIKFIMMGYDLDISGNKKQLSEKLVTKLKSSEAMPKPGELMQELYDNMRRRTTNLSMGDAETNSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LP71</accession>
    <name>A0A6S7LP71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021902">
        <property type="protein sequence ID" value="CAB4036319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LP71"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11493" checksum="493E772FC175A879" modified="2020-12-02" version="1" fragment="single">MVLDEKLSPLKSEMSDLREKVGEMTTFLDMTNAKYEEVISKLKQSEAQKAQIVEENKVLRNAALEMDKKVKHLNESLDDLEQYSRRDCLELRRIPPAIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LV36</accession>
    <name>A0A6S7LV36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046564</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036721">
        <property type="protein sequence ID" value="CAB4044889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LV36"/>
    <dbReference type="OrthoDB" id="5978890at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11121" checksum="2604B31EAA169F6B" modified="2020-12-02" version="1" fragment="single">FETEYNSSFKAFDPEIYTSPLSAALIDEPRSSELDKTKPPAAGLKSNNFLKSVEPPLQNKSKADRRQDNESKDTLSNEKQKIDTKNKSNSEESARNKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DB72</accession>
    <name>A0A7D9DB72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposable element Tcb1 transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012412</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000297">
        <property type="protein sequence ID" value="CAB3980519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DB72"/>
    <dbReference type="OrthoDB" id="10051057at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tc1-like transposase DDE" evidence="1">
        <location>
            <begin position="73"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="30298" checksum="07F9A64C675D414B" modified="2020-12-02" version="1">MASRHTFSRHLNLLGYRFLQARKKGLLTEKDRKRRLSFARKTKRLCLGPNANFWCDEVAFYLDTSFVHKYNPFNAAMTPKSRVWRKKSKGLEITTKGSKELPGGQRVHVMVAIAYGKGVVLRVPYTKMDGPFFAQFIKEHFRIAFARAGPKQKGRRLFILDNDPCQTSKVAMKALEDIEAEMHVIPPRSPDLNPIENMFHLVKNDLQRQAICENIMAESFSEFEKRILNTLDKTSVDVIDRTIDSMSGRINAVIKSKGFRIKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBF7</accession>
    <name>A0A7D9DBF7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A014079</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000404">
        <property type="protein sequence ID" value="CAB3981576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBF7"/>
    <dbReference type="OrthoDB" id="8948150at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP9-like helix-turn-helix" evidence="1">
        <location>
            <begin position="76"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="2">
        <location>
            <begin position="154"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="3">
        <location>
            <begin position="309"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3981576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="647" mass="73840" checksum="95D4A8DFF718C470" modified="2020-12-02" version="1">MHGTTIPQLQYFYCNIESQEMVLSPNTVESTSQTTPDLTINTPRKKKLRNSIKRKNNKIYRMKMQLKPKKIKKSESTLKEELAQLPENVANFIREQIKLHSKKSHGRRYSPELKTMALSLYHASGKAYRLLSKIFVLPNKASLKRYISKLPTVAGISEAILKAIQQKVQHMNEMEKICSLCIDEISLKNHLYYNVPDDIITGLEDFGIGVRSNKIATSTLVLLIRSISGNWKQPIGYALVNGSCPTDFLDGLIRKAIEKLDAIGLRVLVVMSDMGSNFYSLALHLGITPEKPWFTHKNKIYFLMFDPPHLIKCIRTNLMKYTFKFGKLVASWKDIEAFYNKDKSLQIRSAHKLTNKHIHPNNFNKMKVKYATQVLSNTVAASLCTYISLGVLPQTAMGTAHLILKFDSLFDSVNSSKLYSPKQIKKPITETSNHVNFVKDMIDFIKSLQVFQGNTDVTVSNRSNNAALVRPGRQPQTLVLGETDYREKEVSSSIVQQNAVAYVAGYLLKKCFTVHKCSLCKDATMSQTADSANLLYCYYKNYNESTQSQGLILPSQHFLDFVLHLEDVFVQQFSAYNRSKLVGANLLKSLQSVSITFHSCPEFPMDYMLKLFLRMHIYYTIKFENRRLATPTKKGRKSRKYIKVSHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DCI1</accession>
    <name>A0A7D9DCI1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Regucalcin</fullName>
            <ecNumber evidence="7">3.1.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Gluconolactonase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A039227</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-glucono-1,5-lactone + H2O = D-gluconate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10440"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16217"/>
            <dbReference type="ChEBI" id="CHEBI:18391"/>
            <dbReference type="EC" id="3.1.1.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="15">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the SMP-30/CGR1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.17" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020000496">
        <property type="protein sequence ID" value="CAB3982413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DCI1"/>
    <dbReference type="OrthoDB" id="423498at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004341">
        <property type="term" value="F:gluconolactonase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019853">
        <property type="term" value="P:L-ascorbic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.120.10.30:FF:000027">
        <property type="entry name" value="Regucalcin homologue"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008367">
        <property type="entry name" value="Regucalcin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013658">
        <property type="entry name" value="SGL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005511">
        <property type="entry name" value="SMP-30"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10907">
        <property type="entry name" value="REGUCALCIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10907:SF47">
        <property type="entry name" value="REGUCALCIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08450">
        <property type="entry name" value="SGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01791">
        <property type="entry name" value="REGUCALCIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01790">
        <property type="entry name" value="SMP30FAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63829">
        <property type="entry name" value="Calcium-dependent phosphotriesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0106">Calcium</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="14">
        <location>
            <position position="215"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="215"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00008853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00016808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR605511-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR605511-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3982413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="34512" checksum="680BB903A2F4D3C4" modified="2020-12-02" version="1">MAKIECVFDASGYKVGLGEGPHWDDKNQRLLWVDVFDRSDETKGKTLHIYDAATGTDRAIKLCSFVTSVVPRKNKSSSVAVTFERNFAFLDLETGKLEIIKTVDDDKQRNRFNDGKCDAVGRYWAGTLGPEPVPTQILPYQGSLYSLDVGSSNVRQTHKEISLSNGLGWSTDNKIMYHIDTYERKVFAYDFDLVSGSVTNKRVAIDVAPELGWPDGLCVDIEDKVWVAMYDGGQVVRFDPSNGAVLRSVKLPVSKVTSCCWGGKNFDELYVTSAREFLSEEKVKNEPLAGSVFKVTNLNCKGMRANEFDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJE5</accession>
    <name>A0A7D9DJE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075474</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001132">
        <property type="protein sequence ID" value="CAB3987193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJE5"/>
    <dbReference type="OrthoDB" id="5989194at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="569" mass="63758" checksum="C06FE0960BC1E1BC" modified="2020-12-02" version="1">MSNQGDKDLSEPSQVPDGQKRRITWSNKVFQDTVNDKLEMAICKRSKLIALLKKIEECEDYIIERHMNELMQVTNEYELITYELKCLFEQDNYGDFKEEAEQTVSQAHSMIKKAKTNQSDRRSEAPSRRSRSHSHHSRRSSSSTSSYTRLNALAEAAAARESAEYERVMTRKEHDCRQRELEHAKEMAILIADKKVAIANAKLKAIEEALQEEELGERVNIPEIPEMGVEERTDDWVNSVVSQENALPGTNPSPFVNVPYDPTVPHNPTTNLGGTVPATGIPYDPLVPHNPTTNLGGTVPATSVPYDSLVPHDPTTNLGIVPVKSVLHDPLVSHGTTTNIGSTVPLWSVSNSSYRTPSQAFISQFSQIGDATGSQLIELLMSANQQVAAGLARQNLPKCHPDIFSGDATLFHPWKQAFKAMIKDTSVTAEQEINYLRSFTCGEVQRVVDNFRKRNHNDPTSLLQNLWKELETRFGSPAVITNALLEHLHSSSNFHEKDYAKLQEFADLCADVDSQIDNLPGLACLHYPGAIRPIIEKLPVSLRTKWEKELLNMRKVTMMHIQALIFSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DM88</accession>
    <name>A0A7D9DM88_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001286">
        <property type="protein sequence ID" value="CAB3988147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DM88"/>
    <dbReference type="OrthoDB" id="5948131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="23967" checksum="9FC2B29D2E73D328" modified="2020-12-02" version="1">MSTIVNGTKSKSCQVKFGIPQGTSVLGPIFFSMFCNDLPEIMQGDDGEIEMFADDTTIYVIGPNPDSVASILNEMVRKLSWWCLKNLLTVHTGKTEYMLLGCAWFIGPLQQIKLDVPVIKLVNTKICLGLKVDSCLKWDVHALEVVESFNKKLNLLKSFHFLPLQARLDLYFMVILPSITYGILIWGSVGKTMFDNLERIHIRAARLIYQYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DR73</accession>
    <name>A0A7D9DR73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Neogenin isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066283</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001471">
        <property type="protein sequence ID" value="CAB3989348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DR73"/>
    <dbReference type="OrthoDB" id="6107927at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050964">
        <property type="entry name" value="Striated_Muscle_Regulatory"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13817:SF73">
        <property type="entry name" value="FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13817">
        <property type="entry name" value="TITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="32016" checksum="656AF1587F4BA407" modified="2020-12-02" version="1">MHLKVYPEEWWIADCQVKNLDVNATLWQKMTGVDIEMIADGKNLIMENNVFNFTNLSSFAHDGSYYCEVCGQDKHVAGFKIYTDLDGKGFQYPKIINKPNSTVEFGADITLVCKVSGRYKLRWFKGSERRSCPEYKFKNTEDFEKGCNLTISKFSRHDEGAYSCSASRSIVNWSAQVEVRLVMIAFVKPAFVNSYDRVISFKEGETLNLSLVATGYPKPEVKCTQENERQNNIIANGSSAILYISKLMYSIHNGTSFQCTANNVNGSTTYNFSLNIWGKCVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ECM3</accession>
    <name>A0A7D9ECM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005339">
        <property type="protein sequence ID" value="CAB4005874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ECM3"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="103" mass="11863" checksum="2890DF7A0E1AD2EE" modified="2020-12-02" version="1">MMCHNKFRAWLEIPPCGTLDILLLGKSKFGLNIIDISAKFTQCQVVLRSKLKNSSFPDIRQAYKASSTNTNVQYDRYLKPKEVIQEIRTEKVANITHYLTLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGH0</accession>
    <name>A0A7D9EGH0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Scavenger receptor cysteine-rich type 1 M130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A083988</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005828">
        <property type="protein sequence ID" value="CAB4007541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGH0"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="2">
        <location>
            <begin position="326"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="203"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="204"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="224"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4007541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="53114" checksum="712CC0EDFAD0AC97" modified="2020-12-02" version="1">MNGCENELLSTSSNGEGVHAVNFTLPTETNINDDPSLVHLTKAVEAGFSLADTKIRNIEEKLNVKISDVLDDLNELKARSEPVSERLVNALLEENTKLKKDNDVLSGRLNNSLLVVSDLNTRIKDIENEKCSLITAIRLIQCADKSHVDSTVTEQLKSDDTNVFNQHDLSHNLSMNDVEESIRVVDKNPDYFLSSNKIPESQSLKRKYKSKSKRKGLNLDKNLSENANSTTRSEVLQQISANNNSTAEPVMQQIPSNDNTMTEPVMQQIPSNVNSITDPVVQQIPSNTSGTNNLHTVPETHNKHANYSVKNVTVVAGDSIVQNLQGWRLSNPDNHVVVKSFSGANITDMEDYLKPILRKEPNKVILHVGTNDLKHLSAKRVAEGIANLATQIEEDSPATSIVISSILPRSDKSELSAKATEANKLIKAICSKNQWAFIDHKSKLARTFKNLNKVNWSQERVSKVADGLTMEYMSSATEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZP8</accession>
    <name>A0A7D9EZP8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ig-like and fibronectin type-III domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020142</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010179">
        <property type="protein sequence ID" value="CAB4018816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZP8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14881" checksum="FDA57A8E43A82B5C" modified="2020-12-02" version="1" fragment="single">TSYQYKSLRNDEANINFVHVSPLKGAVESKRYLKQPMLVKALPLSSSSIYLAWKGPINHPGGIRYRIYLKKESQTFQQHKDIAGAEAIVDGLEANVMYEVCVRVVDKHYKTARSSCDDVAVITTPAQLGKYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F288</accession>
    <name>A0A7D9F288_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010988">
        <property type="protein sequence ID" value="CAB4020507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F288"/>
    <dbReference type="OrthoDB" id="1902038at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35385:SF2">
        <property type="entry name" value="PROTEIN B, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35385">
        <property type="entry name" value="PROTEIN B, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14803" checksum="7CCAFB863907E486" modified="2020-12-02" version="1" fragment="single">IDLAWEHNHSTDNLEASNFKYLCTEVIEKITKLYEAGHTPLTARQQYLKDLRVICKNDMEFHVKKADRSTTPRRRDFRYIYEQFEKETFGGKHDGMFHKLVETVEQYKACNPEACKRRLPTFWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAA8</accession>
    <name>A0A7D9HAA8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A056767</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000057">
        <property type="protein sequence ID" value="CAB3977602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAA8"/>
    <dbReference type="OrthoDB" id="5986544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="221"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="333" mass="37649" checksum="357128F3DA49114B" modified="2020-12-02" version="1">MKQKDQNKGGRATTGRREPRLQCKLCGKQVSSMGQSKQQVRTVRKSETSESDADDNYLLTVTSPETVAAVQSNSKKYPSKIFETLIVNKTPVKYQLDCGATVNIIPEDIYQLIFEDPQHKLLEKCNTQLIMFNKSVMTAQLDLMMVNTDNVLSMSVPQAWTKPTLTRADILSQYNDVFTGKVPLAMKSPIKQELDRLEGLDIIKPVSVLTNWVSSMVAATKRNGTIRLCLDPKPLNKALKRNLYPLPTMDDLLPDLATAKVFSVVDAKNVSWHVPLDEASSYLTAFSTPWSRYRWTRMPFVISPAPEEFQRRMENDLQGLPGVTSWCMDRVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAR0</accession>
    <name>A0A7D9HAR0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">WD repeat-containing protein 91</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A017524</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Early endosome membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Late endosome membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the WD repeat WDR91 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000246">
        <property type="protein sequence ID" value="CAB3979984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAR0"/>
    <dbReference type="OrthoDB" id="193023at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031901">
        <property type="term" value="C:early endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031902">
        <property type="term" value="C:late endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0141039">
        <property type="term" value="F:phosphatidylinositol 3-kinase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045022">
        <property type="term" value="P:early endosome to late endosome transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051898">
        <property type="term" value="P:negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056327">
        <property type="entry name" value="ARMC9_CTLH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006594">
        <property type="entry name" value="LisH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039724">
        <property type="entry name" value="WDR91"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13083">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 91"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13083:SF3">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 91"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23138">
        <property type="entry name" value="CTLH_Armc9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00667">
        <property type="entry name" value="LisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50896">
        <property type="entry name" value="LISH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0967">Endosome</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ARMC9 CTLH-like" evidence="8">
        <location>
            <begin position="51"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="214"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="185"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="214"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="252"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="263"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="296"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="316"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF23138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3979984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="760" mass="86407" checksum="21690FE6C618AE91" modified="2020-12-02" version="1">MAAAVKALDEIIKEYLLFRGFTNTLKTFEAELKLDKDKSFRVNKIVEQFITFVQYYDLQGIREYWSYLKRRFFSRLDSVHLYNAHKLEKCLYRFYLVNAVQTSRPDKVTDFFEKMAPELQNQADWKEWFVLPFLKSPEQNPSLDMYFSSLWQETFPLSLHNFLNAIFQSMPLPRLLKFDAERIISEKLKQDNNHLHKKIVILQQELSILQENKEKKPAAKDVDPQPRPKSAVKETKAKEKETTFIQRRFRKNKDSQEKRKSQLLEQETTQTENSQTKTTEKTNNMEQENKDFDIPQLNTKSDSTLDSTQSSGTELESSKNSEEKKSDSQSLQNSSIQEYDANLSPIKADDFQSEIEFKEKRSQSLTSKITARRAPIRRAISNTSQNSYREMTNMSTNSDNTTLKESSEKPFLVLGEETFSEHRSSIVQCDFSPSGKMISSVDLDGIVKVWKHQPTLSTVATVMTKSSILCTEWASKTDKVLLLGTSNGKIRLYDTETKTTRCDLSTESNHSRIVSLACSPLGTSFVCSATVEPKSSMTMSSVFKHALHTDQDKNTSLLLWDLKTMKLERHLPLGGNITRINCIAYNHNGTLLVTGGADGVIRVYDNRSYDCLMSWSAHTGQVNSVQFSVDETSVFSLGRDNQFLQWSLRKMGLKTASIVAHDGMSGPRDHTVMTSSKAKPALFSRLFTFDCKGEHLLTCAPASGIIYKYNQSDNVLSQVFSIGESKSHVTSVDWNTAGDCITCLTGCLNGPICMTTLLKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HH04</accession>
    <name>A0A7D9HH04_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000752">
        <property type="protein sequence ID" value="CAB3984542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HH04"/>
    <dbReference type="OrthoDB" id="10056483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="200"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="468" mass="52645" checksum="76C8F28921BF0173" modified="2020-12-02" version="1">MYCDMSNDGWTLIARFSNADSKNWMLNGNLWYDRISSFGHTTRPAYNKDMISDAFWKVKGNEFKITRSDDSSHTALLQTTSNCLQGGTFRSKITSYGNFRSGAVWASDRCRGSCSVSYGGQYKTTAGFEKHSCSSSIQTSNYIGFWCDWSGGDGAVMMIGGGGSSCDRADHGIGITEENEAKFGNGTPYYDFGYEANNTPTSAYSLNLWDYLTDRCQRVVLENVASEWSPVTSGVPKGSILGLLLFTIFINTLPDSLSPASKTALYADDSKVYRPITSPVDSMALQQDLNNLDVWRVKNSLQFNSSKCEILTVTRKKHPSTFPYNLAGNDLVRCDETGKWDSHVTRIRSTANKCLGLLKRTCYDLPDTRARRALYLSLVKSQLSYGSQVWSPESATLKKRIEDVQRRASLWILRLKRGDLAYVDRLKKLDLLPLSYDREIKDLTFYYKCRYGLIDSIQIFLQLLSVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNB6</accession>
    <name>A0A7D9HNB6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001060">
        <property type="protein sequence ID" value="CAB3986720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNB6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13292" checksum="8449320E703D4E32" modified="2020-12-02" version="1">MLFLSWTNVIIKYIKTKIAVDEKQWGSLSQEERKSRLEKYVNSGMDCKKDLSKCKRNDRDDSSTPSTPVISMTASRTKNVHLHLRIACIRARYPEFPASALVVPLNFSPTFSTGTPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTD9</accession>
    <name>A0A7D9HTD9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A007787</name>
        <name evidence="8" type="ORF">PACLA_8A084381</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002212">
        <property type="protein sequence ID" value="CAB3993229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020012274">
        <property type="protein sequence ID" value="CAB4023026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTD9"/>
    <dbReference type="OrthoDB" id="427924at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="53"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3993229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4023026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19384" checksum="F50BDE796649F6E9" modified="2020-12-02" version="1">MNLTLNPTKCEYNKPSVEFYGYIFSKGGVSLDPKKVEAFQQISAPQNPTESDSTLIVDASPVGLGAIFMQKNSKTKEEKVNAFASRALNPVEQRYSQTEKEALAILWAWEHFHLYVYGSHFTVITDHKPLEQIHANPRSRCSARLERWSLKLQRYDFTVKYQPGKSNPAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUL9</accession>
    <name>A0A7D9HUL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Epididymal secretory glutathione peroxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A007881</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutathione peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001819">
        <property type="protein sequence ID" value="CAB3991281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUL9"/>
    <dbReference type="OrthoDB" id="446890at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000889">
        <property type="entry name" value="Glutathione_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51355">
        <property type="entry name" value="GLUTATHIONE_PEROXID_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 4" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3991281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="79" mass="9394" checksum="30BDDE64601EC4DB" modified="2020-12-02" version="1" fragment="single">SLCPNPITLIGNPLERFYTPIRTTDIKWNFEKILIDHTGQPRKRYTPAFKPLDMKADVQNLVQECLKGYQRKVKWWSFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HX99</accession>
    <name>A0A7D9HX99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">FAM49B isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A068470</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CYRI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001991">
        <property type="protein sequence ID" value="CAB3992160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HX99"/>
    <dbReference type="OrthoDB" id="60973at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030833">
        <property type="term" value="P:regulation of actin filament polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039789">
        <property type="entry name" value="CYRI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009828">
        <property type="entry name" value="CYRIA/CYRIB_Rac1-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12422">
        <property type="entry name" value="GH09096P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07159">
        <property type="entry name" value="CYRIA-B_Rac1-bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3992160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="307" mass="35018" checksum="00A81F85DB3CBF09" modified="2020-12-02" version="1" fragment="single">AQPTSSESEIYEVVKAVLDLSPQILEDLQDYQGANEQIRGAISNPSNEELQDVAWKAVMPLVGQLKKFYEYATELEAVLPQLLNALCSGNLTPVEHLEQQQALAKQFADILHFTLKFDDLKMTNPSIQNDFSYYRRTLSRRKLSNCLEEHRRISDIPKFRCEMLSKFSLLRLEPYPTPMLKTLSDATSKFVSENKNLPIENTTDMLSTLANLCRIMTENPEYTSRFESQETTLFCLRIMVGVIILYDHVHPLGAFVKTSNIDMKATIKVLKDQPSNSVEGLLNALRYTTKHLNDESTPKNIRALLQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXG5</accession>
    <name>A0A7D9HXG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002210">
        <property type="protein sequence ID" value="CAB3993216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5973409at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="176"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="738"/>
            <end position="793"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1039"/>
            <end position="1282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="220"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="276"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="738"/>
            <end position="761"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1058"/>
            <end position="1074"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1112"/>
            <end position="1134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1155"/>
            <end position="1175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1226"/>
            <end position="1237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1245"/>
            <end position="1260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1282" mass="139338" checksum="EB3DF6E8CA662066" modified="2020-12-02" version="1">MSHSCAVHNKTVSLTMEKSVQCDNVDDDVNLGDTEKENQEIHVNLTDNVMTNIAMMTNSHAPLPATTPIDASIATDKLQPLVKAISEEKHVFQPNILGKRVKDDINLEILNFYSLKDNNLSFSLNPKPASLVTVMKYQGGEFVEVKSSSSYNSSMCLRDMKKAISAALDSCITQSNAEEDVVPSPPRPSPRRDVTAAENSSQGKSVSPKSTPPKRVVEDNTGTSEDITSVSEGSKGQTDSPKNNIGSKGTHTGSKGAHTGSKGTHTGSKATPEVPKLSEKSKKTPEKAKQKTTEVPKEKPQPAKEKIEEKPEKPAQTRVKKIKVPDEESIKFANRQREIQKMKKELKERLKREGKDGVDPATRMNAWGRTVGVTCTMCGNHVQKSYGCFRRDTAPAKLVHLFTPGMNRIKICRRCLPYKKQAGKPEQENRVVKPGLMSMPNNPEGLNPGTNTPITIAPLPDKPVSATTLNAIHRKVTGQESTARENTARVNIIASHVNNPGLMNNPAGLVNNGSGQMNNSAGHMNIDSAHVNTDSVHVIDMTAPGMPSEIDLSGESSKGSAIEYIRKLALNLRTNYNGQQGDGSLAGNQDLVTPEEQIIKTPILEHLSNFTPVTPSMNLANEVTTSVNVPGAQSAQWKPVLNQVIPVNQPITPENTTGFVQRSEGNVIPTPPWTSLPIVLTSRGQVPRGSKSAPIQTFVTTANQKDLKLLPAIMVPSQSALPRQGPVVLQIQRVKLVRDRPPGEKAESKGKTTEDKGKQNEMVEQSESGFRITDFGGYTGNISTGSHQPLPEEISSTEVENSISNFLSQAKEISPAQVQTPTHGNFQTLTGEISSAQVEASTVDLESIAGEMVSCDQVGTSTDDIKKITEEIASLIEDASGYTQDKDANMVDAIGHLGTEQDTERIGQDQSEKASETLDIVDPKILESGFLQPSEGLGDQILTSGGLGISYSQHEPAVVLCGSADITSQDATMYPSGYEMSLDRDGGQGGILGGSTNSCVRNIFESQISEEYLPQANDEKLNERSKVNDVDLEKLNEMNKLEQEAVTESIKDSGLLPEDDHSEEKELPDVHDVKSASSDVSESKESNLSENELQDIASQDEKLEATGEEFSMEMKEDAPKIEERKEDVEKESSQKDGSQGEVRKDKTDSNTTTKASEKQAKAKEIRTKIAAEEKSISSTLAIDENITLDLRRSQRRTASPRKPSPGKSPAKQIEQKVHGTRQQRQKQAEHGAQKDKPGPQAAQRGKTERQGSQKDEKEPEATQGVKRKRQGRGTKPAKVLKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I5Y9</accession>
    <name>A0A7D9I5Y9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RING finger 151-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A048234</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003226">
        <property type="protein sequence ID" value="CAB3997910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I5Y9"/>
    <dbReference type="OrthoDB" id="7923847at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051746">
        <property type="entry name" value="Kelch_domain_containing_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013010">
        <property type="entry name" value="Znf_SIAH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51081">
        <property type="entry name" value="ZF_SIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3997910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="500" mass="56819" checksum="6CEA087D36EA3642" modified="2020-12-02" version="1" fragment="single">MASYIQGYDEERFATTVNRNFLCLICFNVLKDPVLCPRNQHCFCRACITKHLENLRRCPTCADELAVETLAEPNRMVKDYLNELKIHCVYNNRGCHEILQLQHLDNHEATCGFTPAVCTNQGCGATLNQRDLIHHQSELCEFRKLKCHSCGEMEKRMANLEKNMERNAADMEGKLEAVNNEVRGLKTVLIEGFDEMKDVLIKMEDKIDTTEVRNIASGDKENIIVAGGAWNDSVEMFNWRQRKWSPLQSLPKKRFGATSFVCNNHVTIAGGFCSGYLDDMIRMNIDPNADLSMHWSDCPVKLPAKLAHHSSVLYNDHLIVTGGYDGNAVPDCIHEVQLVPPYTVKKLSRMPEPRREHSTQLFDDNLLIVGGSTTVRHQDNLSSVVLYDIKKNECKQLAPLPYEVNEMTTVRWGDNIVVIGGVDKRGNELDTVIIYNVKTEQSHLLPSMRCKRRACTAVVIGNKIVVLGGRDEQQRNLKSVEAFNFESYTWQELPEMSQAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICT7</accession>
    <name>A0A7D9ICT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041956</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004531">
        <property type="protein sequence ID" value="CAB4003071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICT7"/>
    <dbReference type="OrthoDB" id="435038at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="6-phosphogluconate dehydrogenase NADP-binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="53" mass="5615" checksum="B13FE77D443D2BD5" modified="2020-12-02" version="1" fragment="single">MTALPAPPHVRDVMTGDSGVLAGLRPGGVWIDHSTTDYQQTLELAAEAARLDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHP2</accession>
    <name>A0A7D9IHP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Choice-of-anchor A family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034414</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005919">
        <property type="protein sequence ID" value="CAB4007810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHP2"/>
    <dbReference type="OrthoDB" id="10063431at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101967">
        <property type="entry name" value="Adhesin YadA, collagen-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="212"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="416"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="713"/>
            <end position="885"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="218"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="426"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="450"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="723"/>
            <end position="742"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="750"/>
            <end position="785"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="786"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="800"/>
            <end position="885"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="885" mass="96612" checksum="2E71442AE0761151" modified="2020-12-02" version="1">MKLTRIVEHEFGDGHDRYKPDDLKYNTVRNNRELKQVMSTFDVNRNRVQDDEMIQEYESSLQELGNGSTDKGLARQSQDKSSVVNIDLTDDIQDNPKFGFDDFDVNGPNLSNQTNISTLTKDNELGKGKSIGASVNVKGSYENNGLLNVKSASMKDERSSGYNQTMKSNSQFKNEEREGVKQYKFARTKPIGADRKPCTNFESTAYDESKVVVPNTPPRKEKQTVKSRSMDYKDVQASKSTGNSVNVRQDISKVTSFYRTSYTQTQTSKPPHGNKDISKFNSLSKTKSISQHEDTRKSLGKTVYKSNNNQKVNSFYGNNDREAHVETNKSIGRPVFASKDISKFDWFGNTTRKDQQLHAKNTMRNSANASKSNPIYINSSQITNDKQAQVQTGKLKETPCFESKYISKIDILEKATHRDQHGQGMERSSQANKGNPYLNNFYTTRDKQTDLQPSKETSAYKSKDISKMNITAKTSKGQSGRALRDMDGGLGSNEDLFGSDDDLDELLVKSFTDDFDQMNCHLGTQGDSDDFKWMENDVINNDGGVKDLLGNLDNDMDDDTLVACCDDAMSPTIQVRENGPNSRLSGSSRNEMMSKGVKRKLNIPDAQSKVRRSGSSNIPNNVGISRDLDKFCKDDADERIKECPFCAKSFHSRFSKGDIDQHIALCCSSEEIVFNGKQANETIYLLPAGEDKVLAGEDKVPADEDKVLAAEAKVLPGEGKIPGGEDKVPAGEDKVPAGEDKVPGGQDKVSGGEEKVPGGEDKVPAGEDKVPGGEDKVLGGEDKVPGGEGKVAGGEGKVAGSEDKVPGGEDKVPGGEDKVPGGDDKVIAGEDKVPGGEDKVPGGEDKVLAGEDKVPGGEDKVPAGEDKVIAGEDKVPSGEDKGSCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUX3</accession>
    <name>A0A7D9IUX3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058467</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009212">
        <property type="protein sequence ID" value="CAB4016671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUX3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20408" checksum="21F8353D7FB0DD76" modified="2020-12-02" version="1">MIAALTAVKNFMFVGFWIINTHASVKVTTQGLTAVMKLQEEECPLNGSMHQNRTSDSFNTQLVASTSNKSAKEAAVKEGDIFRVKDDKHQRNTWKLGRIKEMIRSSGRIPEQFSEIKRSIEYLVPVECNQEPAPCSFWSSIVNDMSVADSNVSCVVMNAEGTTPTFMNSRGKPGRPAAITSNFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWJ1</accession>
    <name>A0A7D9IWJ1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA (cytosine-5-)-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A071495</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020009132">
        <property type="protein sequence ID" value="CAB4016476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWJ1"/>
    <dbReference type="OrthoDB" id="5376140at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044027">
        <property type="term" value="P:negative regulation of gene expression via chromosomal CpG island methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.120.10:FF:000001">
        <property type="entry name" value="DNA (cytosine-5)-methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.120.10">
        <property type="entry name" value="DNA Methylase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050390">
        <property type="entry name" value="C5-Methyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031303">
        <property type="entry name" value="C5_meth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10629">
        <property type="entry name" value="CYTOSINE-SPECIFIC METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10629:SF52">
        <property type="entry name" value="DNA (CYTOSINE-5)-METHYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00095">
        <property type="entry name" value="C5_MTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4016476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="32520" checksum="7E21C5A61E8B1267" modified="2020-12-02" version="1">MAAAPGQKLPMFPEPTHCFARRACQRTVVVDDTKYVSNIQRVDSAPYRTVTVRDAMSDLPEIRNGARASPISYDGEPQSDFQRKIRGNEENTMLRDHVCKEMASLVVARIQRIPQEPGSDWRDLPNIEVRLADGNKTKKLNYSHKDKKNGTSSTGQLRGVCSCAEGAACDTQARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTITNPEPMGKQGRVLHPSQHRVVSVRECARSQGFPDTYHFVGEILDKHRQVGNAVPPPMAKAIGLEIKKCLMKTEPKQESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J480</accession>
    <name>A0A7D9J480_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074467</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011482">
        <property type="protein sequence ID" value="CAB4021517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J480"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16526" checksum="E8FB54017C9C1B24" modified="2020-12-02" version="1">MSAMMAGRRKYKSGAQKRAEKKKKTESSLSNTSCISTFLQMKDNVDNNEEPTSTSSSSSIAEVKDDSFFDNAEKDLNSSICPESNHSVTGDKDENFTPLKLSSSTSEEKLDKNKDLVFDTTRKFPTDRGHFKENITDCDFKILAMHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J842</accession>
    <name>A0A7D9J842_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfotransferase domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A070511</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfotransferase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012864">
        <property type="protein sequence ID" value="CAB4024149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J842"/>
    <dbReference type="OrthoDB" id="5946641at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11783">
        <property type="entry name" value="SULFOTRANSFERASE SULT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34624" checksum="F078287C77DCA406" modified="2020-12-02" version="1">MSTSEARNPAMELMIQKRSRLMTNEGRQKALSFVPRSSDVLVATPMKCGTTWIQQIMHQLRSGGDMTFTDIDEVVPWIELAYDVGQDLDAKHKYQPRCFKTHAGYEVCPKGGKYIVVYREPCASLYSAFSFFEGQHFQPGEITLDEFVKYMISPNEKMHQNYFQHLLSWWPKRNDPNVLFLLYEDMLDDLESAVKAVASFMGIDDEASITNAVRMSTFDFMKQSRDKFASNLLSSYRNKALGIPEGVRLQRVATGSATKGREMMDEGTKQAVQIMWNETVTKETGFQDYSEFRDGLKKEKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JE00</accession>
    <name>A0A7D9JE00_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Furin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A056183</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015052">
        <property type="protein sequence ID" value="CAB4027834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JE00"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004622">
        <property type="term" value="F:phosphatidylcholine lysophospholipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383:SF5">
        <property type="entry name" value="SGNH HYDROLASE-TYPE ESTERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="2">
        <location>
            <begin position="283"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="200"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="203"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="215"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="232"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="254"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4027834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="428" mass="47673" checksum="4AAFC66C4FE9F5B8" modified="2020-12-02" version="1">MDTEQTITGMSLLHNLSTSSKGKLKWTADFEALQRFVAEVLVLSDGEWTTPGGHAKLYQNESISIRWYSDTESITISGKDEKEFKEKLLKLASISAGLANDEDKLVDVVEKNRSVSHNDNKSHPNNDLDDSQETYLKILNCQLQAKLQALSDQFVSSMTYINRTLSDHSNQLKELRIADKESAAVNALLTDNVNISNQDTLKRKYKSKKSNKKSKTSEKQSKDEQRCITDSPAKTTQTSQPINEVSNVNKNTTSSPKSIQSPSKKVTVVAGDSILKHVEGWRLSNASNHVVVKSFSGATTSDMEDYLRPVLRKEPNKIILHIGTNDINYQTAQTVAEGVLNLGIQITQDSPTTDIVISGILPRTDKPNLMSKVNQANRLIKAFCIEKNWAFLDHESFNSTCLNSRGLHLNRKGTSILARNISKYISTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JG38</accession>
    <name>A0A7D9JG38_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A011026</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015330">
        <property type="protein sequence ID" value="CAB4028223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5975670at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="2">
        <location>
            <begin position="1160"/>
            <end position="1213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="379"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="157"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="379"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1293" mass="148484" checksum="F30FA43CA8202BB1" modified="2020-12-02" version="1" fragment="single">NEICSAAAASKTILEYIYCRGRKIYFWHVIGNQLRLTQPGPSPDKDALKEHGEVFETKGWIQKAIYAGEPVANIKTKKEHYDECWREFVSKHEQYMELLVSEEEKDIASRSYKELMTKKMHLDEIVMSLRRRLELESRQKEEDASSFSGKSRRTLASKSSHSSKFSTVSKRKEQLALAQLKRSQLLKQHELERRMTELNFEKEYMEARMEEERAIHENVNKNTLPMNQGQGLSPLSQPYVPQEQIVQGTNISSPQVCKVYSPERHAEQYNVPLQLTQTYPQQEQPNRFTRREGPTKHTVKEIDTGEEMVRALRQVVSMPKIKYMHFDAEEGYTTAKKTLHLEVADRTLRNFLHFVKKRATLVNNEFGEDLCASLVKPKENVRRKDGSREPSRRSSSFASGLDNRQSHKNGKGCREQEVKVTVATGAGERVCLSVVPLKVRAKGSNQPAIGAYVLLDSGSEVTLCHERLKKQLAVSGRKLDFTLSGMTGSTKVRSELIDIEVASLDGEILIELSNVRTVNQMPISEACIAKKGDVRSWSHLRDLPLQELETRDVMLVIGLQENPSMFLPLEYRSGEERDPVAIRYSLGWTVIGPVGEKMDGMCATSNFARMSVNADDLSTEDRDRAMEESEHVMKGRTEEVKEVERVQVDRENTDEDLKHQLERLWKTDFEGSLVETKVCPSVEDKKALQIMEKTLKIVDGHFQVALPWKNNPPYLPNNKIVAERRGLLLKKRLLRDDELLKKYRTTFNEYLEKGYAEKIPKEQLNMENRPIWYVPHHPVTHPLKPEKVRVVYDCAASYGRTSLNQQLLQGPDQTNQLTGVLIRFREESVAMVANVEAMFHQVLVEPRDCDALRFLWWPSDDLSGEMEEYRMTRHLFGATDERAKSVKDLELDRLPTESALGIKWNTEEDKFEWHVSEKMLQCYLQAIRVDRCFKPVGFGVVKEIQLHLFSDASRLGYSAVAYLRLEDTNEQIHCAFVMGKARLAPLREISIPRLELTAAVISVRLSKIIQEELDLEIERIYYWTDSMSVLKCINNESKRFHTFESNRLTVIRSGSDPSQWMYVNRDDNPADDGSKGVKLDAMISNDRKIMSSSQEELKILTVAERAKKPDKVFLRKTGMSLRQLNPQLEDGLLRVGGRLVNAPIDGDLKHPIILPFKHPVTEMVIRQYHAEVGHMGQESVLSSLRKEFWIVKGRTAVRRVVRSCISCQRRKARLGEQFMANLPKIRLTPHQPPFTRVGVDYFGPLQVKQGRSVVKRYGCLFTCMTTRAVHIEIAHSLDTDSMINALRRFISIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGN9</accession>
    <name>A0A7D9JGN9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Gelsolin 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A014278</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the villin/gelsolin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016134">
        <property type="protein sequence ID" value="CAB4029379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGN9"/>
    <dbReference type="OrthoDB" id="6375767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051693">
        <property type="term" value="P:actin filament capping"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008154">
        <property type="term" value="P:actin polymerization or depolymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11290">
        <property type="entry name" value="gelsolin_S1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.20.10:FF:000043">
        <property type="entry name" value="macrophage-capping protein-like isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.20.10">
        <property type="entry name" value="Severin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029006">
        <property type="entry name" value="ADF-H/Gelsolin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007123">
        <property type="entry name" value="Gelsolin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007122">
        <property type="entry name" value="Villin/Gelsolin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11977:SF130">
        <property type="entry name" value="SEVERIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11977">
        <property type="entry name" value="VILLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00626">
        <property type="entry name" value="Gelsolin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00597">
        <property type="entry name" value="GELSOLIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00262">
        <property type="entry name" value="GEL"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55753">
        <property type="entry name" value="Actin depolymerizing proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0117">Actin capping</keyword>
    <keyword evidence="4" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Gelsolin-like" evidence="6">
        <location>
            <begin position="64"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="Gelsolin-like" evidence="6">
        <location>
            <begin position="178"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="Gelsolin-like" evidence="6">
        <location>
            <begin position="297"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="233"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="233"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4029379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="374" mass="43379" checksum="912046AA767CAEB2" modified="2020-12-02" version="1" fragment="single">TILEPLNRFWRKPIKLMFLCMGRNGTPWVKKASAATEKAWEKAGQRPGIQIWRIVKFKVTHWPKEDHGKFYSGDSYIILRTYKKENAEELLYDLHFWIGKYSTQDEYGTAAYKTVELDIFLNDKPVQHREVQQHESQMFKSYFNEITIMKGGAETGFRHVEPTKYIPRLFQFRREKGSVVVKEVQCFKESLDSDDVFIFDAGLELYQWNGKTSNKDERFAALQYVQNLKSDRNGRPKVETLEEDRISPKNAFNTKLPTGGKPRQKKARDEVDAPSEKKLYKVSDDSGKLLVQLISSGELNKDDLKSEDAFVVDQGNHVFVWIGSRASEDEKKNALPMAHFYLQQTDHPYAPTTPSFASCLNEFSSWWFCVPDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JK87</accession>
    <name>A0A7D9JK87_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069493</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017830">
        <property type="protein sequence ID" value="CAB4031692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JK87"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14570" checksum="B95CB1E8EEDB29B1" modified="2020-12-02" version="1">MATKLTHLAPPPAFDAESEKSSLAQRWKDCHERFDMYLLAANITDAKQKRSLPLYVAGAAVHKIFNTLLNDTGTDYKTAVEKFDSYFQPQKNVIYERYVFKQTRPSPEESVDHFITRLRQLADTLTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0S1</accession>
    <name>A0A7D9K0S1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019529</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025712">
        <property type="protein sequence ID" value="CAB4039673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0S1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11188" checksum="26DC5CA5BBA63EF5" modified="2020-12-02" version="1" fragment="single">SNVKFKKFRSGLVPKTLSTNISSSIPPIQKGTEYIVDSKQKADLLKNFFASQAYVDDTCKSIPVSDYQQNQSYLTLIETTKEEVQILIRSVNISKACGHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K124</accession>
    <name>A0A7D9K124_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017903</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024320">
        <property type="protein sequence ID" value="CAB4038529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K124"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18544" checksum="E3E79FDCD36D2E55" modified="2020-12-02" version="1" fragment="single">YSGGGEDLPPCGMPRKKLSESSGCNRTLSFTNCKSFSPAVNVNDIETIQILNKTSDFPTLRMKVQWKVPKAGNSNIWGWQIILANADSSELGFHQCIQVNRKFIWESDIGDLYVNYTFDEIRLGAKLKIQIQGLPAMDMNKGVEKKILTKDLKDYCDVFPESPCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAR7</accession>
    <name>A0A7D9KAR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032993">
        <property type="protein sequence ID" value="CAB4043729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAR7"/>
    <dbReference type="OrthoDB" id="123207at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47272">
        <property type="entry name" value="DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47272:SF1">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 3-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="504"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="531"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="531" mass="60852" checksum="C0A2817946EE1F0F" modified="2020-12-02" version="1" fragment="single">MSREKSRRICFDDAFDSILNGNVSELEDLSSDEDIDDNEDVVSYDDGDDTSDDTSDDNGSDDTGDESVPQPNPDENIKFRWRSKDLPTSDDRFSPEVDNIEETKLPLEYFRQFWTDEVIDLVVQQTNLYSTQQTGSSINTTKQEAEQLTGMHLKMGIIKLPSYKMYWSQKVRFPAVADIMPLKRYEKIRSNLHFVDNSLIGGNSSKLAKIQPVIDIFREQCVKIKPEESHFVDEQIIPAKTKYSGIRQYNPKKPVKWGFKNLVRAVASGFMYDFYIYAGKDATMDENADFKHLQKSAQVVARLCQHLPSNSSHQLFFDNWFTTMDLLIYLKNKGILACGTVRANRLQGCLLQSNKEMKKAGRGTTDYKSDTTQGLIVVKWLDNNAVHVASNFVGVEPLGSVERWCPEDKKKKKIQCPQLILRYNKSMGGVDKADMLISLYRIRTKTKRWYIKIFWHLVDMAKVNAWLLYRRHCETLGIPNKRRLPLVDFILEIAEGLINANKQVPVETSNGKPGRPTKRKSSVQDPSRVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KCT5</accession>
    <name>A0A7D9KCT5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066686</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034721">
        <property type="protein sequence ID" value="CAB4044371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KCT5"/>
    <dbReference type="OrthoDB" id="5982224at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17681" checksum="E92427031C8EB3CB" modified="2020-12-02" version="1">MTSKNEVGVTVIGHNSESRTKVNGYEQRGSYRKDITYDVTIEQIVAVINESSYCEQFIKYECHGSLMSDAWWVSRQGKRMNYWSGAAVDSGKCACGMNNSCVGGKRCNCDFNDQNLREDSGFLTDKNTLPVKQLRFGDTGSSNKYGFHTLGQLLCWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KIL5</accession>
    <name>A0A7D9KIL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001958</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041793">
        <property type="protein sequence ID" value="CAB4045765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KIL5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="100"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="181"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="103"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4045765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="23563" checksum="1DB765E375E65F64" modified="2020-12-02" version="1" fragment="single">GKEKAKRISYPNPTPEKSNEMDVDLPEALKGRIGEKVLEGTSTIQELPPPTIIPTTFNVPPPVISGNSLSSNALEALAAALVSLPQQIQASVGKAIAGTEGQQVKEAERGRKISKDLGRKGEKRKDRSESNRQKKKMEGEGKKGKVDSIAALIERKEKEVETDLMMAGKLQKEYMCMEKEVEVMAKRLQLLKDAAGELQRKSSCAKEELAILKKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KVC0</accession>
    <name>A0A7D9KVC0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072049</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011201">
        <property type="protein sequence ID" value="CAB4020950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KVC0"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="18035" checksum="97204D812A9E50DF" modified="2020-12-02" version="1" fragment="single">MGKNVKSNTIYQLKTDNSVISDDKLKSEAFNDFFVNIGAKLAAEIEDNSLNTNSFARGDSRPTTDSNFFFKFSEINEDEVIYQLRSLKISKSTGLDNIPAKALKISADIVGPPLTWIFNLSIKKGEYVDEWKKAWVTPIYKSDDRLKCENYRPISILPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KYQ6</accession>
    <name>A0A7D9KYQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011948">
        <property type="protein sequence ID" value="CAB4022392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KYQ6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="87"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11356" checksum="7ECC9140BD8CEC5C" modified="2020-12-02" version="1">MANIITTPTSSTPSTRQPAPTTINHPPVFPRPRAADFFNPPPPVMEDVPEPEQPTTPPPCPQSLPSTSPPNQTVTPPDQTPIIEDPSTTSFPSSRTTTSLQDFRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KYU3</accession>
    <name>A0A7D9KYU3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035172</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011361">
        <property type="protein sequence ID" value="CAB4021295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KYU3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13404" checksum="2F498610EE8F224C" modified="2020-12-02" version="1">MNTANFALIVFFGIFYLDSSVKCLSLSSFDNKEVFLTKRSSNNAGQCDLKPNIKELKDLLLEVKNEISDLKDEFNHEMKAMWKYVNAGKCHKQITDKNQGKYRVNTSSVNHKLLYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LB60</accession>
    <name>A0A7D9LB60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016044">
        <property type="protein sequence ID" value="CAB4029257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LB60"/>
    <dbReference type="OrthoDB" id="8056668at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="338" mass="38598" checksum="493D1088BEC01089" modified="2020-12-02" version="1" fragment="single">MQEQIERELQDLRDQVEYSQLEAELLAVDQADERYSDCGSMRSLSKAVAGNRVNMKVDVKNSTPQDRAFYKTDHPSTRPELVKSPPESVVDSKQGIASLSEKCNDTEPSSPEFKPSVDKTKPDLTTTLLEMNLQLVSAMKQGTETTTVMKAMLQRQGIPKPQPMKFRGDPAQFPVFKKRVEVWLNEREFDEREKITRLLSFVEGDARDAIEHCELKSNGFSQAMKMLEPQYGHPSSVVNASLKRVTVGPLIERGDNNSLAKLRNNLRSCLEVLKDNENYKQEINASSNVERVVDRLPMHMRIEWVKNVPKIRHETKLNPTLQHVLELVERQLRIMNGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHJ7</accession>
    <name>A0A7D9LHJ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Adhesion G -coupled receptor L2-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A016594</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018722">
        <property type="protein sequence ID" value="CAB4032817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHJ7"/>
    <dbReference type="OrthoDB" id="1100386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017983">
        <property type="entry name" value="GPCR_2_secretin-like_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011">
        <property type="entry name" value="ADHESION G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011:SF347">
        <property type="entry name" value="FI21270P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00249">
        <property type="entry name" value="GPCRSECRETIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00650">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="38"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="88"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="179"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="88"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="215"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="241"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4032817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="327" mass="36298" checksum="A880638F5324E086" modified="2020-12-02" version="1">MLCCSYLRYGVRSTIILLPLLGLTWAFGLICVNDGLVVFQYLFTIFNSLQGLFIFLFHCVFNTEVRKAFWRKVDIWFTNHNLPYGNNAHSRSKSNNDLSSICTPDKDKKTPPRNGPSMYSFDELTERQRRKFSTATASTCIDPWPHKLSLTPSMDGPHPARFTPSLSSDDIKYQPICKQNAGQKRISPKNLGTKVGDLNGNTHNLDGDSDLQKDGASSVQNNETGSNLAKTGQSVLKEKQPNTNSQQQIVQISSKNIETPKSSEESYIQKQPNTQKPRPTRKSSHESLGDERNVVGIGGHVMNSGDSAGHVRITDVDNSTGSFGTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LLM6</accession>
    <name>A0A7D9LLM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nuclease HARBI1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044013</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020827">
        <property type="protein sequence ID" value="CAB4035209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LLM6"/>
    <dbReference type="OrthoDB" id="6627079at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11762" checksum="6A136EBBFF7635B1" modified="2020-12-02" version="1">MRDALPVETKVAASPYYLADESKYRKVANAFGIGKTTLSKILRSVCLAIVELLGKEFIKIPTDENDITSLASQFYTRHGFPQCIGAISNNRKENRPSTLIERAVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LXE5</accession>
    <name>A0A7D9LXE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054964</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027302">
        <property type="protein sequence ID" value="CAB4040826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LXE5"/>
    <dbReference type="OrthoDB" id="10056483at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17227" checksum="657BB70FE9A748DF" modified="2020-12-02" version="1" fragment="single">IILTVEEVQAVLETLDVTKATGPDNVPARLLKETAPVISTSLCTLFNKSLSQGALPEDWKIANIIPVYKKGEKEYAESYRPISLLSIVSKVLERCVFYNIREQLYQVIKTSQHGFTRGKSCVTNLLEVLNYIGSILDVGGQVDAVYLDMSKAFDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M0K7</accession>
    <name>A0A7D9M0K7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphatase 1 regulatory subunit 12A-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A010164</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028774">
        <property type="protein sequence ID" value="CAB4041694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M0K7"/>
    <dbReference type="OrthoDB" id="539213at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004857">
        <property type="term" value="F:enzyme inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019208">
        <property type="term" value="F:phosphatase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019901">
        <property type="term" value="F:protein kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051226">
        <property type="entry name" value="PP1_Regulatory_Subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031775">
        <property type="entry name" value="PRKG1_interact"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24179:SF21">
        <property type="entry name" value="MYOSIN BINDING SUBUNIT, ISOFORM O"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24179">
        <property type="entry name" value="PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15898">
        <property type="entry name" value="PRKG1_interact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="cGMP-dependent protein kinase interacting" evidence="4">
        <location>
            <begin position="50"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="8"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="37"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF15898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4041694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14351" checksum="90FC0E1027609BB0" modified="2020-12-02" version="1">MMNEDIEEKQKPKEETKSLAERIRAGRTGPTDRYKNTSKTSDSKMPTDVNTLQDKLRETQTELDETKTKLDKTVQEKNKLERKLENMEDDLKQLSDLREDNQRLKDENGALIRVISKLSRTPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M1S4</accession>
    <name>A0A7D9M1S4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029293">
        <property type="protein sequence ID" value="CAB4042001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M1S4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19310" checksum="5A5ABE06FE8647AE" modified="2020-12-02" version="1" fragment="single">MNEARKNGTKPKIAPFRLSTKPSIKDAPIFEDIAYTKKKRPLRKLSTSTSEGNEETTVKEQVTETVEQDQKTDITPFGKMTASSTKKLFGDPLKYKVADPFAIMTAEPDEDEPAEDLTVEPEKESATEEFAPSVENETTESAEKETAETADKEATKGESAELAIMVSAESAKNESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FHA6</accession>
    <name>A0A6S7FHA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing 1-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A064896</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000121">
        <property type="protein sequence ID" value="CAB3978528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="547680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007399">
        <property type="term" value="P:nervous system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd23385">
        <property type="entry name" value="beta-trefoil_Ricin_MRC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd23417">
        <property type="entry name" value="beta-trefoil_Ricin_MytiLec-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00033">
        <property type="entry name" value="CCP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000001">
        <property type="entry name" value="semaphorin-5A isoform X1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000021">
        <property type="entry name" value="semaphorin-5B isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000007">
        <property type="entry name" value="Thrombospondin 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000240">
        <property type="entry name" value="Vitamin K-dependent protein S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.70.10">
        <property type="entry name" value="Complement Module, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.10">
        <property type="entry name" value="Tumor Necrosis Factor Receptor, subunit A, domain 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006585">
        <property type="entry name" value="FTP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003410">
        <property type="entry name" value="HYR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052235">
        <property type="entry name" value="Nephronectin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035992">
        <property type="entry name" value="Ricin_B-like_lectins"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000772">
        <property type="entry name" value="Ricin_B_lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035976">
        <property type="entry name" value="Sushi/SCR/CCP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000436">
        <property type="entry name" value="Sushi_SCR_CCP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011641">
        <property type="entry name" value="Tyr-kin_ephrin_A/B_rcpt-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24050:SF27">
        <property type="entry name" value="FIBRILLIN-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24050">
        <property type="entry name" value="PA14 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07699">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22633">
        <property type="entry name" value="F5_F8_type_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02494">
        <property type="entry name" value="HYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00652">
        <property type="entry name" value="Ricin_B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00084">
        <property type="entry name" value="Sushi"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00090">
        <property type="entry name" value="TSP_1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00032">
        <property type="entry name" value="CCP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM01411">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00607">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00458">
        <property type="entry name" value="RICIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00209">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57535">
        <property type="entry name" value="Complement control module/SCR domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50370">
        <property type="entry name" value="Ricin B-like lectins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50825">
        <property type="entry name" value="HYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50231">
        <property type="entry name" value="RICIN_B_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50923">
        <property type="entry name" value="SUSHI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0106">Calcium</keyword>
    <keyword evidence="7" id="KW-0221">Differentiation</keyword>
    <keyword evidence="12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 14" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="13" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0524">Neurogenesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="15" id="KW-0768">Sushi</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3978528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2544" mass="279807" checksum="18EEC87F3D8C402E" modified="2020-12-02" version="1">MGRLHLFLVFVVLYLKSVESRDGGWSSWSGWSGCASGQCAGDQKIRTRTCTNPKPDANGAYCPGPNAERADCPVQCNCLLSGGWSEWGQWSICESICGGSVVNRTRRCENPAPKAGGSRCQGNSVETKLECAWPCETGPQDGGWGPWSHWSHCPKPCGLSPGVVITRTRRCNSPPPQNGGKACNGNATEEVLSCFEPCPVDGGLSAWTKWSPCSKTCNRGIQDRSRQCNSPFPNHGGRNCDGDVYQIQACKDRDCPGDRAGGWGPWSSLTPCTEPRYCYKGLQNRTRQCNNPPPLGNGDDCLGLAVETQQCPSPADNCADPSKVLPDEADTDRYESYIGLECETTKKYAVLGSFGHLLPAKILNDDFKDFANILRSGYFAKKVDGDDTKYCFEPQDTLLISQVVVKVKLYKVAPLLPSFDRPAETENVPGISITVDKNIAAKNIEFVCHIAKEYTPVTGFTLVNVLFSFYTEGIRYSFQAKGILTRIENTPFYSKVTQITGQLEATGHGATLAINELSDLAGFPVYQYPQSIQGALKAAGLLNIKLSPASFAYSMKTLSTFRVTGSLNIFGVPVHVEILTNPNKGVRIFAIGFSFDGESFGALSKRLSGYGISFLDVLGIDLQIGVSYAPAAQGVIKVTPEVNYAKQPLHSLIANAIPQDLFIAARVSLPKDCKGNGFCTGCKDLLGPDIAFILTGHIQKESIKVTAGFRDIKLTDDISFSKVQLFVEAKKNGSTNLFKLGFQVEVKIAVNKGIVVDRDGIKSPAPAIHVGGIIEWEITKNTIGGALYMSGLWRQAFGIKWLAIGEIVLGIKWVIGAPYPTGGYFGGKVQLGVDCWTAADFSNDGHCFYAQAYFGIGDPSFVYFKIAAITIGKIFRLVSPNLKLPPPIEDTGFPRGVTFSYASEAVDLRFFKGPNIIKGITFDGAVQILGYTIDAKIIVSEDYILADLKFDPIDWQGILTLSRSPTKKDLGPLFFLEYRKKPFYVNCRFEGFVSVLGISAYANMNLTMTEFQLLVQGNFLNLIKAEVYVAANYAPVFSLLKFYAKVTVDLSGLNKALDQAASAVKGAFDEAQRKLRGAQDHVKRKKEECKRKMSLKCDRCRDLKCKKAENDCKGFLDKAGKWIGGAINAVGNWVKNTAKTIGKALAPVGRFFKKIFSGWKRKREIERMRNELFEQHIRRRRFISKIICEGIVGGGCTAVSVLCEGSCRAVEFIGKGLCHILDVAVIALKAVELACGWISAAIQFVLTQLFRIHSIKFEFGIDNTVGGRITFAAAVDFTIFGKRLNLNVNINLRNPSAAVKETSTKALDDYKNKANPKSKSSTDEKVYDDPNPFSDFELSDQFMIENTQSGTEDEARSGACLYTPSKTKGAVLRLTACNENDERQMFSYNLKGLLVSAHSKLCVDTNGDKVGSVLRQTTCNIQTDNQRFECDLEVRTIKRRRTDLCWMTGETSIYGPGSLVQSSSYKCIHPNSGEKNVPEGTRLVMYSTCSESKIEFGLDDGYLLHTSGKCVKPVSGRITDGVELGLYDNCNGHKFGFTKGGSLKHLGSGKCIQPRDEADVPSDGSRLVLRGKCENNEANNRERYIFTWLPIDNHIELQQCTYFEQARLDQRFEVWDESLATVCSKFSKNLAEQRPTKQSSTAHNGFSSRAVDGKFSTAYSLKSCTHTNDETDPWWQVDLLQEYVITDVTILNRAQYGDRLKNFDVRIGSDSSNYQNNPTCHDRVGQARDNEAVRVQCKPPLPGRYVRVQMFGRGMLTMCEVLVYSRLGGYSDQCLLNNGGCDQICYNSCGRKVQCACGIGYKLAYDKKTCIDVNECLINNGGCQQTCINIPGERLCDCKSGFSLKENSETECEDYNECGLNNAGCEQVCKNTVGSYNCDCRKGFELHTNKAGCKDINECQTDNGDCQHQCHNYAGGYWCSCRNGYKLKADLHGCEEKLCPALVKPFRATLTPEICNNNRANIRRDTACSYSCQIGYQLTGGQTQRTCQIDGTFSGRSPYCKPLYCPKVQAPANGGVLPASCASNPSGSEFGQRCVFYCNSGYELRGPRYKSCQADQSWSEAMESTCERVYKNPWIVCPPYVEIELPADKSKIALGEQWRLPNSNMEKLVVHPSYLSNSYEFRAGKTLVTWTASNLEGSVKSCNYQVFVKDTTPPMISNCPADITQTTDFGLLPITWTEPTFSDNVGITNKLQTKTSGSQFKRGTTTKVHYFVFDAAGNSANCSFTVTIKSRTCVPMAPPKNGRLSGNSRYVRLVCNPGYSFEPTLPYPGTFICREGNFKMYLNREWTIFTRAPDCVATKPVNPDNSCDLGYIFVKSKNRCYPCETGLYHSIADKQCKRCPLNSYNDQQGVVSCQACPKGSVTLNTGSIQKSDCIVQCKPGSFSSNGLNDTTSPCEPCPIGTYQHKTASTLCMPCPQGMTTASTGSPALRDCAAPAKISETVPSSSLTAYVGEELTLECFVDGDPSPTVTVDRLGNPLASGSRVFRTPLLALDGKLIGMEVYIKVVQISDAGTYYCSTQNASGRDYRQFRVDVKAKTKRRSVDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FJN3</accession>
    <name>A0A6S7FJN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Zinc transporter ZIP14-like isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A018719</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ZIP transporter (TC 2.A.5) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000057">
        <property type="protein sequence ID" value="CAB3977592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FJN3"/>
    <dbReference type="OrthoDB" id="200954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140410">
        <property type="term" value="F:monoatomic cation:bicarbonate symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005385">
        <property type="term" value="F:zinc ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030003">
        <property type="term" value="P:intracellular monoatomic cation homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071578">
        <property type="term" value="P:zinc ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003689">
        <property type="entry name" value="ZIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050799">
        <property type="entry name" value="ZIP_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12191">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12191:SF37">
        <property type="entry name" value="ZINC TRANSPORTER FOI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02535">
        <property type="entry name" value="Zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="269"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="303"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="336"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="147"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="149"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="168"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="185"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3977592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="42041" checksum="0C2A6A3C6819911E" modified="2020-12-02" version="1" fragment="single">MSTTILYSLLPVRLNSPRTLTKNVDVYEELRKMYSTNGICEQILDQVLNYLNQSIGNHLEKHECFSANELLQELNISVEADVDKGMIPQLSISIISKLLQLQCIKVNYENPLPCPSHFVNHLFEEYAKNNVLYKENMEELMENLKIGRQGTNGSGTKANTSEPADKLARRKRQIVKRSSYRPRNSKMSSLLRQKQQQDGSQVAEGNIYEKCYSADELFSIYHVDENDGCKMKRFESLSIALLDQIESNVCEYNYKVVDEDDEMKKVSDMAVWGFGLAAVSAVSLISLFMILPLLKTKFYKKSLVFLIALAIGTLVGDSMFYLLPRATGFQGKDKDYYWKFFSVVGGIYGFFIFETTAHLLLRQTHTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FKY5</accession>
    <name>A0A6S7FKY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035642</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000095">
        <property type="protein sequence ID" value="CAB3978197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FKY5"/>
    <dbReference type="OrthoDB" id="10053647at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="38585" checksum="D3363DBF46F114E6" modified="2020-12-02" version="1">MEVNALKGAPDERIREVQAATTQDQCMQSLLSTIKDGWPESKKDVQNDLKPYFDVRDTLSHQNGIILKGERIVIPASLRDTTKKRLHSAYLGYDSMMRRARDTIFWPGIATEVRQLAENCEACQQYKPQNQKEPLKEYEEGQVPWNKVGIDLFEIKGRDYLATVDCFSCFIEVDHLSTATSKQIIIKLKGHFARYSIPSEMVTDCGSQFISSEFKTFTKHCGIKHVTSSPLHHQSNGKAETVVKTIKLMMKKSLRDNTDQYEALLELRNTPRYARKRNETRTTSRSFGKGECSDSQNVRHQRGGDALWYYQSQKLRPEDWKKIVENRSKPLDFPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL59</accession>
    <name>A0A6S7FL59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A010682</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000082">
        <property type="protein sequence ID" value="CAB3977962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL59"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="64"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="10131" checksum="9714C1C60CA5CFD3" modified="2020-12-02" version="1">MKSKKRSRKQGGGNFKGGKHQRSSKKQDGGLVGWALDYGLSKKTKSKKSLSPYKRKQRGGGPGMAMAAGLAIPTLLGAATKILPGIFGKKKTTGDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FMB0</accession>
    <name>A0A6S7FMB0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050189</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000081">
        <property type="protein sequence ID" value="CAB3977953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FMB0"/>
    <dbReference type="OrthoDB" id="5988509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="609" mass="66408" checksum="71FDF663FCE00C30" modified="2020-12-02" version="1">MEASALPYLLNIKDDLDDGIALKQLLVAEKALFQNNYPQVVLTHAVSSMAANYSTIIERYEGCSVPFLKGQQPVSGKTTALKAALGVFGIHRCISESTQRYIENKQSVSTIPFGWDDVSNIKTLASVVVNSFNGGGSASMKSCLSLLTVPMLTTNLETFEKRINTRLIRISFEKMEPRLIGKEKIAAEINLRQATKNAYKNVEDVCRSLNCGKGILEQRVSDMMSLQLFCAKKILEKVGLAEDYEGVWQKVKTVNLPSYIPPNNYTTNVETTGAAKSSEESIRDILYEHLIPAILADEPQKVPEYFCHIFNPTKCMCGASVVFHVKSTSECLKRHMNTNDNTISMESITDNSIRSYIKRKQIGCVGVQARFKALGKQFNAAHIQRLWFKEEHLAALDEKFGNKDGNKRQSKLESVLANVAPSGNSSVIHINVEGSSDVHPKTTTVNLSEVPPTTTVNLSEVPPATTVNLSEVPPTTTVNLSEVPPTTTVNLSEVPPTTTVNLSEVPPTTTINLDDDPPATTINLFEVPPTTTVNLSEVPPATTINLSEVPPTTTINLDDDPPATTINLSEVPPTTTVNLSEVPPATTINLSEVPPKTTVDPSDVEGKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQR7</accession>
    <name>A0A6S7FQR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Sortilin-related receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A088439</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000175">
        <property type="protein sequence ID" value="CAB3979192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQR7"/>
    <dbReference type="OrthoDB" id="6514358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005041">
        <property type="term" value="F:low-density lipoprotein particle receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00112">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.400.10">
        <property type="entry name" value="Low-density Lipoprotein Receptor"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036055">
        <property type="entry name" value="LDL_receptor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051221">
        <property type="entry name" value="LDLR-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023415">
        <property type="entry name" value="LDLR_class-A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002172">
        <property type="entry name" value="LDrepeatLR_classA_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22722:SF5">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22722">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00057">
        <property type="entry name" value="Ldl_recept_a"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00261">
        <property type="entry name" value="LDLRECEPTOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00192">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57424">
        <property type="entry name" value="LDL receptor-like module"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01209">
        <property type="entry name" value="LDLRA_1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50068">
        <property type="entry name" value="LDLRA_2"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3979192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="325" mass="35963" checksum="820D4DE7C66DAE3C" modified="2020-12-02" version="1" fragment="single">THCGNVDQIFMCHDRSACINITYKCDGIKDCVDDSDEDCEVTHCRHVDHMFMCHDRSACINLSLKCDGIEDCGDGSDEDCANMTHCRHVDHMFMCHDRSACINLSLKCDGIEDCGDGSDEDCANVTHCRHVDQMFRCHDRSACINITLKCDGIEDCGDGSDEDCANMTHCRHVDHMFMCHDRSACINLSLKCDGIEDCGDGSDEDCANMTHCRHVDHMFMCHDRSACINLSLKCDGIEDCGDGSDEDCANVTHCRHVDQMFRCHDRSACINITLKCDGIEDCGDGSDEDCANNLAVGMESVSNSDALTHAKRVECGRCEGGDFKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FS69</accession>
    <name>A0A6S7FS69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ras guanyl-releasing 3-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A015068</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000052">
        <property type="protein sequence ID" value="CAB3977520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FS69"/>
    <dbReference type="OrthoDB" id="74314at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007265">
        <property type="term" value="P:Ras protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd20808">
        <property type="entry name" value="C1_RASGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00155">
        <property type="entry name" value="RasGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.60.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.840.10">
        <property type="entry name" value="Ras guanine-nucleotide exchange factors catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.870.10">
        <property type="entry name" value="Son of sevenless (SoS) protein Chain: S domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046349">
        <property type="entry name" value="C1-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002219">
        <property type="entry name" value="PKC_DAG/PE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008937">
        <property type="entry name" value="Ras-like_GEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023578">
        <property type="entry name" value="Ras_GEF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001895">
        <property type="entry name" value="RASGEF_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036964">
        <property type="entry name" value="RASGEF_cat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23113">
        <property type="entry name" value="GUANINE NUCLEOTIDE EXCHANGE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23113:SF252">
        <property type="entry name" value="RAS GUANYL-RELEASING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00130">
        <property type="entry name" value="C1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00617">
        <property type="entry name" value="RasGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00109">
        <property type="entry name" value="C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00147">
        <property type="entry name" value="RasGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57889">
        <property type="entry name" value="Cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48366">
        <property type="entry name" value="Ras GEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50009">
        <property type="entry name" value="RASGEF_CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00479">
        <property type="entry name" value="ZF_DAG_PE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50081">
        <property type="entry name" value="ZF_DAG_PE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="89"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="241"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="746"/>
            <end position="788"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="815"/>
            <end position="856"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="256"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="747"/>
            <end position="760"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="772"/>
            <end position="781"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="876" mass="98697" checksum="2FF06C62C128959A" modified="2020-12-02" version="1">MNRSSTTHPSVTSKPSLSNELSSLAIESGSLEKFIKLALREFDENGCIVSPPSITIVLLTMHGWYITSKDFVAKVIEIYEKSRGEHDVAIVPGDDADSSDVFETPPSSYFGHNDQHSKKLTSITESKESSDELDNDMAAQNGRLPVPKITVNGGNLEATGENRRVANGVNRKSEVTLNSKIHMGNNNETSEVASTVSGPTFYGVSVVEPCTVAQVQIEEAESVETPEVKVTCVREESIDKQDDSLLEASNGKHDDVSEETSSLDESLENGDEQVINMWIVCRFLNYWMSKFGSYLRVDDNVLMEIGQFRKSLINESPENEKKIKQLIGRAALGAGELHSHSTRLVRQREVTRMKSLAFHDLTPKDIAEQLTHIDCRSLKKIPMSEWKTYARKTKLSSVPSLEKYVVRFNGLSRWIEAMVLNGDSPERRAHVIEKFLNVAQCLRSHQNFNSLMAVIGALNHSALRRLQQTMLLLSEHKKKFLQEMTEFLSSEGNYSNYRRELANCSVHLKDLIAVDTALPDYVPDKKLINFQKMVKFYTVIATLMNFKNMQPPAPSKFELINMLRLSIQMTISEDELYELSYAKEPKRSSVISQTVDAPKSQLFADWASGRVAAPDSKTIDRHVSSMVEAVFKFYDRDSDGRLTTEDFEAISTNFPFIDTFGVVDADSDGVVTKDEMKAYFLKANYRALGRDFIHNFQETTYLTPNFCEHCGGVLWGLIRQGFKCKDCGINCHKACKGQVVVDCRTKSSTPSSPHLNSSTLERAASKADAIRHKWKNKRKSRMGNPDRDTMIKEEPITVDEVDTVHTKPDVPDQANRALLDENKRLTDENEKLNNDLNQALEKVSHLESQLKHVRQEAITFVLEQLDALQLRRNTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVK4</accession>
    <name>A0A6S7FVK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054021</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000621">
        <property type="protein sequence ID" value="CAB3983505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVK4"/>
    <dbReference type="OrthoDB" id="419189at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="692" mass="80486" checksum="4807BE473683421E" modified="2020-12-02" version="1">MMNILVSDHSIVQFKTTTKKPSVARKTISYRRWKSLDVNQFRQSIDDIDIQSVNSLSDLALLYNSALRDLLEKHVPLRSKTVTLHPQAEWFDAKLLIEKRAKRKLERKFRLSNSPEDIRQFNEHSEYYSHLLVTTRQKFYTDKIEANYGDQKVLFQVLDKLLHRFESSCETVEKLEYFSSVSEHQIENIIRLTNNKSCELDPIPTWLLKQCIPALLPIITKIVNLSLHDAFVPTLFKQAFLTQILKTISLSTDEENSFRPISNLSYVSKLIEKVVDTQLTNHIQEHNLDESLQSAYKKHHSTETAWVRLHNDILSELDDNKTVLLVSLDLSAAFDTIDHSILLRLLESRLGVSGQCLNWFRSYLSNRTTRVIIDGKRSDIKRVNFGVPQGSVLGPKLFTLYILPLGDIARKHNVQFHIYADDCQLYISFKYENRLKTIDRMESLMHDIKTWMTKNMVKLDDDKTKFLVLTGPRRDCSDFPCLSIENESIVKSESVTLLGVELDDKLTLKSHVRNVAKSCFFKLRNMRKIRKCITEDAARIMVHSMITSRLDYCNATLYGLPNCDLDRLYSVQKLAARLITGTRKYDHITPILERLHWLPVKKRMEYKILLLVFKCLQGTAPEYLSKLLKKRENKGTRADDKNPLVIPRFKKVTQGGRCFGRSGPTLWNNLPDNLRLETSFSIFKRRLKTHFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2K8</accession>
    <name>A0A6S7G2K8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036218</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000749">
        <property type="protein sequence ID" value="CAB3984513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2K8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="19348" checksum="469804B5CDE497DF" modified="2020-12-02" version="1">MSRAREADQKKKMENESKVNGSKYRKKSHFIIGDNVLIRNYNKSRKFDTLFLQEAFKIIDMNREGNIVTVQQEGSGLTLCRHPDDLKPSKSRPDNREEKQECMQYADIQWPEVLSTMTTTRATAWKREIQHHRLDEVNGNGRPFQFTSKHECLRTVFILSICDRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5D7</accession>
    <name>A0A6S7G5D7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022541</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001101">
        <property type="protein sequence ID" value="CAB3986975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5D7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="entry name" value="Serralysin-like metalloprotease, C-terminal"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36493">
        <property type="entry name" value="NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="343"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="191"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="226"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="343"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="368"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="399"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="535" mass="56144" checksum="A00E3F77CEE02CBA" modified="2020-12-02" version="1">MVTGSNKQLGQKVQEPSIFVRGTEIKKISDAEDKDPDAEDKVPDAEDKIPDAEDKVPGEQHKVPAAEDKVSGAEDKVPAGEEKVAGAEDKVPGGEDKVPAGKDNVPGGEDKDPRAEDKVPGAEDNVPGAEDKVPGAENKVNGCENKVNGCEDKVTGREGKVPGGKDKVTGGEDNIPGREDKVPGGEIKVPGGKDKVPGGEDKVTGCEDKVPGGEDKVPGGGNKVPGGEDKVTGGEDKVTGGEDKVTGGEDKVAHAKDKVPDAEDKVPGEQDKVPGAEDKVPALRRRLPAVRTRFLALRTMFLAVRTSFLAVRKRFLAVRTRFLAVSTRFLAVTTRLPAVGKKDKVTGSEDKVPGGEDKVPGGDNKVPGGEDKVPGGDDKVPVCEDKVAGGPGGQNKVTGSEDKVPGGEDKVPGGDDKVPGGEAKVPGGDDKVPGCEEKVPGGEDKVPGCQHKVPGGEDKVLVARTRLLAVRTRFLEVRTRYQAVTTRFLAVRPRYMAVTTRFLAVRTRFLAVSTRFLAVTKRLLAVGKKIPGGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHU3</accession>
    <name>A0A6S7GHU3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">glycogenin glucosyltransferase</fullName>
            <ecNumber evidence="2">2.4.1.186</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A069780</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 8 family. Glycogenin subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.186" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020001342">
        <property type="protein sequence ID" value="CAB3988556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHU3"/>
    <dbReference type="OrthoDB" id="2014201at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008466">
        <property type="term" value="F:glycogenin glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002495">
        <property type="entry name" value="Glyco_trans_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050587">
        <property type="entry name" value="GNT1/Glycosyltrans_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11183">
        <property type="entry name" value="GLYCOGENIN SUBFAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01501">
        <property type="entry name" value="Glyco_transf_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="341"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="341"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00038162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00038934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3988556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="377" mass="43848" checksum="3623DB66B11FFA9F" modified="2020-12-02" version="1">MSRNIKFSQHSSRHISAVHRPSTTQVRLTRTTAIHERRRYLHRPRYAYVTLVMCGDEYAIGAAVLGWSLRKFGVQHELIVMVTPDVSIKTRKLLMKIFDRVETVKYIQSMTRSTLRGHEYRQEKEWMKFCLTKGNMMKFIEYDKIVWMDADMLALANLDEIFELSTPAGICTSIRDDERWHGERLPEAEIKESLSNNYGVRGCIMVLKPCVRDYLMAKSQQHAGHGGVYPGPDEYFYTMMYKERWHHLDQKYGCSAVSENNGIQPAAVHFDLAKPWQSKEVDGCPGIQKWWLFAKDLITEHPEFTNLLPIMGTPSGQSRSWLFLSPVEKVSFKLMNDYKTERSETGKRRNEKKITGQQHTSRILLNKDKINANHVIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H224</accession>
    <name>A0A6S7H224_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Kelch 25</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050068</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003246">
        <property type="protein sequence ID" value="CAB3998005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H224"/>
    <dbReference type="OrthoDB" id="6357972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd14733">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18186">
        <property type="entry name" value="BTB_POZ_ZBTB_KLHL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.100.10.30">
        <property type="entry name" value="Jacalin-like lectin domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001229">
        <property type="entry name" value="Jacalin-like_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036404">
        <property type="entry name" value="Jacalin-like_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45632">
        <property type="entry name" value="LD33804P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01419">
        <property type="entry name" value="Jacalin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51101">
        <property type="entry name" value="Mannose-binding lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="481"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="489"/>
            <end position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="505" mass="57686" checksum="2B9D22AEB1E54945" modified="2020-12-02" version="1">MENPLLSHLEGMLTRNEEQAASRTYSKDEKNHAKNMLERMYKCYEEGKFCDATLVVGENEIKTHRLVLTSLSEYFSGLFDNNWKDSKQDKIEIKEFDEATLKCILHFAYTEELQLNPSNVLRVLAAGNFLQLFELDFIKVSIGDYLEKKVNNDNCPAMLVISEQFNVVKMKNFLVKYAARNFSGVSQSEDFLELSVELLVEILQSKVLVADYGRDFLPLPTEQEDFILDIVLKYVSHQCENEQQTDLLLSKLIHYIHFHCLSALSLEKLCCYASNPSCSRTLELIKQAKEEIEAEDDELVKLWGTEREGSISKERCCKIHADRVHVGPTQTTFGDESFTRAPHLFIRGMQIWIRLWDNRPVIGGLKVFYSNGESPMYGGDDEDSEVYEFHLGDDERIVKAEVRSGWMVDSLMFFTKKRQGLGPYGGDGGTKYTEEPKGEYGFLSYLKGAVVNAQGKLGIAKLQLIWKEYLVDECDSDGVDIEDGDRDSSISSECSQYMTYTSESE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBL6</accession>
    <name>A0A6S7HBL6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Carboxylic ester hydrolase</fullName>
            <ecNumber evidence="4">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A016195</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the type-B carboxylesterase/lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020004136">
        <property type="protein sequence ID" value="CAB4001619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBL6"/>
    <dbReference type="OrthoDB" id="5962005at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052689">
        <property type="term" value="F:carboxylic ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050654">
        <property type="entry name" value="AChE-related_enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002018">
        <property type="entry name" value="CarbesteraseB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019826">
        <property type="entry name" value="Carboxylesterase_B_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43918">
        <property type="entry name" value="ACETYLCHOLINESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43918:SF4">
        <property type="entry name" value="CARBOXYLIC ESTER HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00135">
        <property type="entry name" value="COesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00122">
        <property type="entry name" value="CARBOXYLESTERASE_B_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0719">Serine esterase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4001619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="458" mass="52875" checksum="E388EC23E4CD707D" modified="2020-12-02" version="1">MFDGHSFVAAAGDDVILVTINYRLFDLGLLVTRDESVRGNLALFDQRLAFKWVQENIERFGGNPQKVTIFGNSAGSGSASCHFFSEESWPYFQRSILQSGSITFPMGIVDMDTAKNMSEKFLGEVKCKNDKNVLECLQNLSTDDIMEHYRTTEYSMTKNFLLPVIDGDFLKELPAKMLIEGKHKHIDLMLGVCEHEAFLWHFSKLQKNQTTEFYINYFQQILQIEVDDLSERVHEKALELYEPQSYPNFVEALRPTIELETDKYWACQTTQLARTWSTQSIGKNVYVFRFSYTPPLDLLVYYPQGTFGFAAHASDLMGTFGFPINNTHFPEEDMVMSSRMVTYWTNFAKNGDPNVGITNITYNKEEFQRLPDWPKFTDSNERYLEFNELHELGSGENLREMYCDFWNDPEEFTRLNPVASGSFNVWLAIVITLTVTTVVAIILYALLRDSFRKSYNTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGN3</accession>
    <name>A0A6S7HGN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030933</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004691">
        <property type="protein sequence ID" value="CAB4003666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGN3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="131"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="186"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25229" checksum="88C91512DEDB8069" modified="2020-12-02" version="1">MASSSGSHSSSQKKAKQLRKYCVAGGPGKASCKNNSYALEYLCISFQNQTKAHFESHCFTQRLDIGLEIVNNAKQNDGLTRKRIRPSILWYLLKQLAKYLTENTERDTLKPDVPSTSTALLVNASDIASVDLPDETINTPTTPENKSKDLDELESNTKAEEVTSEGSHRTTKTATARKDENADQVQDYDTDEESIREEQDPDWDILEMMEMTQKSQIQYPIQET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIR3</accession>
    <name>A0A6S7HIR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002569">
        <property type="protein sequence ID" value="CAB3994937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIR3"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23220" checksum="35D934B5D1042110" modified="2020-12-02" version="1">MHQRSCQVIHGLNDELCADLEEQITTDNSKNISENEHNGNDINTVNYESFPELKKDINLPKNDSEWSTANDYFNYALQPNDPITFQDLNSKIKLLNDAIYNYFANNYGHTETVPDKNMVAKYKEYTVKELKKALQHLKSKKGELSEIKYVSAVSRTLRDRLRNNSNDADDLNDSESFNHNKYLERSFWGYVKNIINRKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIT2</accession>
    <name>A0A6S7HIT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">SAGA-associated factor 29</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A078460</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002754">
        <property type="protein sequence ID" value="CAB3995880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIT2"/>
    <dbReference type="OrthoDB" id="10265994at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140672">
        <property type="term" value="C:ATAC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000124">
        <property type="term" value="C:SAGA complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20393">
        <property type="entry name" value="Tudor_SGF29_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd20394">
        <property type="entry name" value="Tudor_SGF29_rpt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.140:FF:000026">
        <property type="entry name" value="SAGA-associated factor 29 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.140:FF:000029">
        <property type="entry name" value="SAGA-associated factor 29 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037802">
        <property type="entry name" value="SGF29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010750">
        <property type="entry name" value="SGF29_tudor-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047288">
        <property type="entry name" value="Tudor_SGF29_rpt1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047287">
        <property type="entry name" value="Tudor_SGF29_rpt2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21539">
        <property type="entry name" value="SAGA-ASSOCIATED FACTOR 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21539:SF0">
        <property type="entry name" value="SAGA-ASSOCIATED FACTOR 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07039">
        <property type="entry name" value="SGF29_Tudor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51518">
        <property type="entry name" value="SGF29_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="SGF29 C-terminal" evidence="6">
        <location>
            <begin position="163"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3995880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="307" mass="34365" checksum="CF3FD32BBB51FF4F" modified="2020-12-02" version="1">MRRAKSTASSGINSGGNAVPKLLRDLHQLIHQVQDERNRNEHTLMNISKTHERMKSEAKVSSYFKSKLKGLYGAAIADCEAEAELIRRATDKIANIQALTNEGAQGRSHVDGSGLDIEPSRKAGMRRGVLMTILQQNAAQLPMFMGKASENVPPLCGSIPPAANYAPDPGDHVAARVRTPDGEEQWILAEVVLFNPSTNKYDIDDIDEEGGNKKERHHLSRRRFIPLPKMKVNPSTHKHALFQKQDLVLALYPQTTCFYRALIHEPPSRPQDDYSVLFEDTSYPEGYSPPLCVAQRYVVTSKENKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTQ2</accession>
    <name>A0A6S7HTQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083379</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003228">
        <property type="protein sequence ID" value="CAB3997921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTQ2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="16357" checksum="E587FF8AC6728BF9" modified="2020-12-02" version="1">MSDCLLHLSYPCFVVAVVAVVAVVVAAVATVAAATVAVVTVAAVASAVASIVAAAVAVVTVTAVVATVVTAVVAVATVAGVVSIVAAAVGCCCNCCCCVAAVAVASVAAAVATVAAVTVAAVVAAVAVASVAAAVATVAAVVAVVVFVAAVVFVAGLAAVVVVAADPNLVAALIAECCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HU26</accession>
    <name>A0A6S7HU26_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein bL17m</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">39S ribosomal protein L17, mitochondrial</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A049267</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005816">
        <property type="protein sequence ID" value="CAB4007513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HU26"/>
    <dbReference type="OrthoDB" id="275000at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005762">
        <property type="term" value="C:mitochondrial large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1030.10">
        <property type="entry name" value="Ribosomal protein L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000456">
        <property type="entry name" value="Ribosomal_bL17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036373">
        <property type="entry name" value="Ribosomal_bL17_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14413:SF16">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN BL17M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14413">
        <property type="entry name" value="RIBOSOMAL PROTEIN L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01196">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64263">
        <property type="entry name" value="Prokaryotic ribosomal protein L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00035413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4007513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16987" checksum="E06CCAD0511D13AA" modified="2020-12-02" version="1">MTFPHPPFRNILHSCESIWQYVCLFMRVGKSAKYNICVILKMIDLAKQGDEATIYTWINRKEMIPKVFGDLLPRFQHTEDNYTAVYRLPPRKFDSADMGVVEFKGNKLPQLLSNEQRDEQIRQHSDNDVIKWKMENIPWKGTPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HW11</accession>
    <name>A0A6S7HW11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003398">
        <property type="protein sequence ID" value="CAB3998611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HW11"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21234" checksum="7AABBB602432B110" modified="2020-12-02" version="1" fragment="single">MTALLDMTNQWCFNIDKGMLNDVIFLDLKKAFDTIDHEILQMKLACYGLKECSLEWVASYLTNRVQICHVNGIYSNEETISCRVPQGSILGPVLFLLYINDLPSCLEHGIARLFADDTNMTSTGCNLESVENKMQIELNKIFKWLCANKLTLNILKTDFMVIASRQKLSALGDSITLSVNGVSLSQVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWC1</accession>
    <name>A0A6S7HWC1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006283">
        <property type="protein sequence ID" value="CAB4008957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWC1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="15187" checksum="91367CBF29404C84" modified="2020-12-02" version="1">MEAEDIECEINEKSAQISAFVLSCNTVKNPVISQANAPQVITSPQQVSAPQVITPPQQDNSPQTIPSQQVSESQPTTSSTLEVNPLQTPPLNQEQSVTVNESEGVSSMNTSTNTGNLPMNYQSNPVSPTSQPHLTSPQPQTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2D7</accession>
    <name>A0A6S7I2D7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041382</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006852">
        <property type="protein sequence ID" value="CAB4010623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2D7"/>
    <dbReference type="OrthoDB" id="5987220at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="512" mass="59289" checksum="60C925538B24EC21" modified="2020-12-02" version="1">MAMENEISIFINDVLSYLAVGKDMFIELKRNLFTAEDDCANVLCQRCTAFIDGLSILSGNSLWSRPVGDTYIADDMCNLIIELQRMHDILQERVETAPTENSRYTCGYERGSRRRGRPRFLIPERQLVGLRSLNFTWKQIAEMLGVSEKTLRRRRIDSDLPVCENNYSNITDEELDRTISLILGTSPNSGERMVTGALVSQNVRVQRARIRASINRVDPINRQLRNHISIHRRVYSVPTPNALWHLDGHHKLIRWRMVIHGCVDGFSRVIVFLKCSNNNEALTVLESFQSAVNTFHYPRRIRTDHGTENVEVARFMLHKYGITTNPVITGRSIHNQRIERMWKDVFAYVLQYFYNLFYFMESQDILDPDNELHLFALQYIYIPCVKRALDYFTLQWNNHPMSTQGNKSPLQSWTAGFYEFAESNYTVVRDVLDVDTINFDHYGIDDDGPRPQIETSNNVVVPRSTIQLSMEETRALTDEISPLSEDNDNGVHLYQRTVAFVNNFFDSDVESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I7K8</accession>
    <name>A0A6S7I7K8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007307">
        <property type="protein sequence ID" value="CAB4011900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I7K8"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="657" mass="75343" checksum="D701D70F8401C1FD" modified="2020-12-02" version="1">MKRANLNDLSLNMASEDWTTVYSALDVDEKVSAYNSIIIKMLDEFLPEKTIRVHHSDKPWITGNIKMQIKARQKAFSRGDQPRYKQLCEKVANLIAKAKATYYRSKASEFRTSNQSKWYNCIYSLVNAENTTHTQFPHGPENLDLSDLAEKLQKAFTKPWSDRYTNVAFEIPEVNHPHKNNKPPLPSIGQVKAVLKHLNPRKATGIDKVPAWMLKQYHEDLAPVVYDIVCCSISQCCYPSLYKHALISPVPKVQPPRDINNDFRQISVLPHLAKILEKIQLQLNIEDLKIKNNQHAFTQHRSTVSALISTTQTWFNATDCSKTGKMGVHAAFIDFRKAFDLVDHNILLNKLAAMNINKPFWLWIKSFLSGRVQQVNLNGTLSSIATCPAGVPQGSVISPILFNTYIDDLEDALPEQLKVSTNKYADDCTQHQIVSVDSNSNLQQSINEVNNWAVLNKMAINAKKTKDMWISFTDAIPEPPRLRIGNELIERVNALKLLGVSFQNNLKWNAHVEEITRKANKRLYHLRECRKSQLPAEVGIITYQSKIRPILEYASPVWAGLPNYLRDEIERVQSRSLRILGLEKDYLPPLNERREEATSREVDRFMNDPHHPCRSVLPKLINNQYNLRNIDRNRNISFFSGTERHKHSFSGRACKYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IA14</accession>
    <name>A0A6S7IA14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exostosin-2, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A048057</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 47 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008746">
        <property type="protein sequence ID" value="CAB4015514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IA14"/>
    <dbReference type="OrthoDB" id="5954868at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008375">
        <property type="term" value="F:acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050509">
        <property type="term" value="F:N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015012">
        <property type="term" value="P:heparan sulfate proteoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004263">
        <property type="entry name" value="Exostosin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040911">
        <property type="entry name" value="Exostosin_GT47"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11062">
        <property type="entry name" value="EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11062:SF381">
        <property type="entry name" value="EXOSTOSIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03016">
        <property type="entry name" value="Exostosin_GT47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Exostosin GT47" evidence="2">
        <location>
            <begin position="86"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="424" mass="48397" checksum="9268B25E71E00B15" modified="2020-12-02" version="1">MFRGVNFKQRLFYLIVIILILAIVVLFLWSGSDHDSLAETTNNKVTVDSQTVASNIPLPLPSIQNCRMHTNDCFNIYRCGYNEGDKISVYVYPFTNYFDEQGHQVSPPFSREFYDLVMAIKESNYYTSDMDKACIIVPPLDMLNQRRINVKYAGQILNSLPSWRQLGGKNHLIFNMIPGQSPDFNTSLDVQTDKAVLASGSFSSSSYRPGFDISIPISNSLTQHYLGEQNIRKSTKKWFLLSAQANYNPNYRPTLENLAALRENVLVLNRCIKDDRIYSRCDGELLSYKYPQILQSSTFCLVIRGVRLGQSSLLDALMMGCIPVIIADNYVLPFSEVIDWPRAAVIVREEQISNVYEILTSYTPQEITDMVKQVNHLWSNYFSSMKKITLTTIKIINDRVFPNSAWSYEDWNTPNIPPSGEAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBE4</accession>
    <name>A0A6S7IBE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008232">
        <property type="protein sequence ID" value="CAB4014283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBE4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13235" checksum="A9728C0BD9745909" modified="2020-12-02" version="1" fragment="single">RDTKSLTVRGTPSKSKSTFQCALPEDNLDKFIEAYNNKTNETLKPVVSKKPAAKSGYELNKTFRCHHNTRYNGTENPVRVLSEKPAKRFKNICCPLKMTVKKLTQDEKSTFNVLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IID3</accession>
    <name>A0A6S7IID3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">RB1-inducible coiled-coil protein 1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">FAK family kinase-interacting protein of 200 kDa</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A039636</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Involved in autophagy. Regulates early events but also late events of autophagosome formation through direct interaction with Atg16L1. Required for the formation of the autophagosome-like double-membrane structure that surrounds the Salmonella-containing vacuole (SCV) during S.typhimurium infection and subsequent xenophagy. Involved in repair of DNA damage caused by ionizing radiation, which subsequently improves cell survival by decreasing apoptosis. Inhibits PTK2/FAK1 and PTK2B/PYK2 kinase activity, affecting their downstream signaling pathways. Plays a role as a modulator of TGF-beta-signaling by restricting substrate specificity of RNF111. Functions as a DNA-binding transcription factor. Is a potent regulator of the RB1 pathway through induction of RB1 expression. Plays a crucial role in muscular differentiation. Plays an indispensable role in fetal hematopoiesis and in the regulation of neuronal homeostasis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
            <location evidence="4">Cytosol</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Lysosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Preautophagosomal structure</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009547">
        <property type="protein sequence ID" value="CAB4017437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020009547">
        <property type="protein sequence ID" value="CAB4017438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IID3"/>
    <dbReference type="OrthoDB" id="447953at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990316">
        <property type="term" value="C:Atg1/ULK1 kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005764">
        <property type="term" value="C:lysosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031090">
        <property type="term" value="C:organelle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034045">
        <property type="term" value="C:phagophore assembly site membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060090">
        <property type="term" value="F:molecular adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019901">
        <property type="term" value="F:protein kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000045">
        <property type="term" value="P:autophagosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000422">
        <property type="term" value="P:autophagy of mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061723">
        <property type="term" value="P:glycophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008285">
        <property type="term" value="P:negative regulation of cell population proliferation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034727">
        <property type="term" value="P:piecemeal microautophagy of the nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061709">
        <property type="term" value="P:reticulophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034517">
        <property type="term" value="P:ribophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd17060">
        <property type="entry name" value="Ubl_RB1CC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.90:FF:000049">
        <property type="entry name" value="RB1-inducible coiled-coil protein 1 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040040">
        <property type="entry name" value="ATG11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13222">
        <property type="entry name" value="RB1-INDUCIBLE COILED-COIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13222:SF1">
        <property type="entry name" value="RB1-INDUCIBLE COILED-COIL PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0072">Autophagy</keyword>
    <keyword evidence="13" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-0458">Lysosome</keyword>
    <keyword evidence="12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0804">Transcription</keyword>
    <keyword evidence="8" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00053494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00069790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00080154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4017437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21429" checksum="984BCACA792AF586" modified="2020-12-02" version="1">MLYVFLVDTGAMLTFEMELAMESVETLMTSITSTFMIPMEKQVLIMQGGETLDPSHRICNYSSAGTEQNPIFLFSKTTIESPMPPSPSLNLGSETSLKEEVERSLQLPPTYETLVSRAKLAMRFQDMGSELLQSCVTLINEQHLQRQGWLAVVANLENIASTFETRGSILEQTYTEFLEIIPQYKSLLDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ILG9</accession>
    <name>A0A6S7ILG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025852</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009923">
        <property type="protein sequence ID" value="CAB4018253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ILG9"/>
    <dbReference type="OrthoDB" id="10066767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46903:SF2">
        <property type="entry name" value="ASPARTIC PUTATIVE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46903">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="200"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="37856" checksum="3FD28FCBF9CC6A56" modified="2020-12-02" version="1">MSDTETTENEAQETVVIVISDFKKQKRNAKSLLTRLLTQLSCLLSEENPNRENICHLLVKIDEQKDICLEVLDKLEEAYQKSGDKQNALRIGDESDKIAEQVDVETHASRQFLLSLVKKSVHLKNNVAMATESQPTNTQQLAQEIITTENMETPLLENDGVQTESNSSLPQETHQVNSNIAHEQLSSGNNTTFVDNGIGTQLSESSSSQSELNTTSQSGSARRVDGHLERIRIPIFTGDKMKFQQWNAAFTSCVDKKSLSPQFKMLRLESCLRGEAADTVRGLGYSQEAYNAARARLERKYGGSRRQVQSHLEELKKLNHYKRKMPENWKSLHMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISH0</accession>
    <name>A0A6S7ISH0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A004170</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010732">
        <property type="protein sequence ID" value="CAB4019999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISH0"/>
    <dbReference type="OrthoDB" id="6011127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="143"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="198"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="144"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="31561" checksum="706B2FBA6E48990A" modified="2020-12-02" version="1" fragment="single">MATTDITGVFPALILKVIVSIYRGKTNEQLCESYRSRMPYDVEKHKNLINFKRDLEQFLGLKKQAQGLGIPNIDIKLYRLARTSCGKTENYLICTQEQWNVELPLLLGDENSDLNVHVIQRVVSWSDKSVVIVSVPDTLNPSGTNSCTNKSSTNNAKKNVEQESCTQKSSRVRKRKIEANEDKNLQHDLMCDLNVVRNDRQTEELARLQDELKKLSNSKALNEMKFVSGICHKKYNISGSRTIEGKISYYKTTHFDKCMNKKEKLAQDAKRARTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IV34</accession>
    <name>A0A6S7IV34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011502">
        <property type="protein sequence ID" value="CAB4021566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IV34"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11237" checksum="0FC9498452EED9C5" modified="2020-12-02" version="1">MAVQMFNGNVPCMLFKRREVANFLNGEVVDGQRVNDAGVSKQKTVVQSDSRGFTSSHLKKELTYDKARNKLKQNISPTTPVSSDGGDQERPLFPTENHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYQ9</accession>
    <name>A0A6S7IYQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010416</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011755">
        <property type="protein sequence ID" value="CAB4021999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYQ9"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="22736" checksum="3601AC920742D4C4" modified="2020-12-02" version="1">MVAEQLVSPLTHIINNCISKQLFPSPWKTARICAIPKAEKITSNNDLHPISILPTLSKIFECLVLRQMSDFVTNTTTGVLKESVSAYRRGHNTMTVMLAMRDDIYRAMKRGEVTIAVLADFSKAFDTVSYSTILRKLHWQGFSKDYLKWVTSYLTGRRQFVQIDDAVSSTTDVCFGVPQGSILGPILFNLYVNDHSDNLDPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J048</accession>
    <name>A0A6S7J048_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Protein YIPF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A062422</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Golgi apparatus membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the YIP1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012000">
        <property type="protein sequence ID" value="CAB4022479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J048"/>
    <dbReference type="OrthoDB" id="10256463at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006977">
        <property type="entry name" value="Yip1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039765">
        <property type="entry name" value="Yip5/YIPF1/YIPF2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12822">
        <property type="entry name" value="PROTEIN YIPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12822:SF2">
        <property type="entry name" value="PROTEIN YIPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04893">
        <property type="entry name" value="Yip1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4022479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14437" checksum="5646AF0BFE3375EC" modified="2020-12-02" version="1" fragment="single">PFWICATLVVTIAISGNLANYLIHTGDHNWAYDFHKITFAAVAIFAYAWLVPVGVWGVLTWRGNTSGYSFLEIICVYGYSLSIFIPISILWVIPFELVRWILVIIGLCLSGAVLVLTFWPAVRDDDRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1G3</accession>
    <name>A0A6S7J1G3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">FLYWCH-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A048103</name>
        <name evidence="5" type="ORF">PACLA_8A048687</name>
    </gene>
    <organism evidence="5 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012894">
        <property type="protein sequence ID" value="CAB4024198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020018017">
        <property type="protein sequence ID" value="CAB4031964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1G3"/>
    <dbReference type="OrthoDB" id="9976404at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007588">
        <property type="entry name" value="Znf_FLYWCH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04500">
        <property type="entry name" value="FLYWCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="FLYWCH-type" evidence="4">
        <location>
            <begin position="11"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4024198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4031964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="20306" checksum="005A12808E97CB17" modified="2020-12-02" version="1">MARIITGARGIGRVLVEDGFKYQFNRQSQSTMHWRCWRTTCGAKLKTNLFDRNDDPNVRVVEREQHDHEEDDAVIQRGIFLNNAKGSVRDNPTRPIKRVYDQHVSAIHREAGGSDQEIPDFQSVRSQMSRVKSAEVPDTPQDIDDVNIEGSWAQSWRNKQFLLHQDNDWGIAIFST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J359</accession>
    <name>A0A6S7J359_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071137</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013221">
        <property type="protein sequence ID" value="CAB4024757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J359"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="262" mass="30104" checksum="DE04942077E2C77A" modified="2020-12-02" version="1">MEACGDRFVHYLAEQNIPVAMSTEVIRETAKVDPEIKQIRESIINNQSYKLPQDYKLVGDELSITKDIVLRGNRIVLPAKLRPRAIALAHEDHAGITRCKQRIRSKLWSPKMDKNIEDHIKTCHPCQVIEKPERPEPVCPTKRPDACCTHFVIDVCGPFPTGEFVVVLTDYYSRWPEVKILKTVTSENILQWLDSVFAAHGYPEEIKSDNASYFTSQEFWETLKTWGVNLRTVTEYWPQANGQVERFNQVLLNHVLTSRAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JH88</accession>
    <name>A0A6S7JH88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029083</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017836">
        <property type="protein sequence ID" value="CAB4031706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JH88"/>
    <dbReference type="OrthoDB" id="6123456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012934">
        <property type="entry name" value="Znf_AD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07776">
        <property type="entry name" value="zf-AD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00868">
        <property type="entry name" value="zf-AD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51915">
        <property type="entry name" value="ZAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="107"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="36211" checksum="B8417FA5A35F3153" modified="2020-12-02" version="1" fragment="single">MENNSTQSTPRKVYLKQKHKGCCRLCGCETESRRMTNVLSVAAVQKFLVKIISESCGIFIQRSDGLPTAVCNKCITFVKKIHVFIGQCQQAQTDLKEQVTVKRCPVQSPNISNKKPAKRQSMSQDDESIEEPEMDVPGPSTIHLDIAQSTTTSTRSVRSRLDFSSTASSTVIPSSTLITARQIEKITAAARTEDASVLAYIIMKYCPNIVREVKRKITDDINASCKNLCLRNKGSILHAGRQDSCGMMINFSFEKLWEEMETNIPFVMEILNAITGVEGGKAKQDLRAKYGFLYSILMNVRWHELSLIQRLNTLCLIEGGCSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRH1</accession>
    <name>A0A6S7JRH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080577</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010291">
        <property type="protein sequence ID" value="CAB4019082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRH1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19356" checksum="A3F28BEE6237664D" modified="2020-12-02" version="1" fragment="single">KTDGARASVRIVLVDYQKVFDHVDHTIVLSKLKALEIPDSTVSWIANFLSDRQQRTKLGHDCFSEWGNVPAGVPQRTKLGSWLFILMINDLKALSEIEEWSENPFPPIKINEDTSLNYQLRINKKIHVPKFCTELLRILSHIISCNFLNYLYCIKTRAKTFRDLRVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTY6</accession>
    <name>A0A6S7JTY6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041628</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020175">
        <property type="protein sequence ID" value="CAB4034501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTY6"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11940" checksum="138BB3D515C55797" modified="2020-12-02" version="1" fragment="single">MKTGIPQSSGLGPLLFLIYINDFPKCLRHTRPDMFADDTQIATSNSDINVILENLNTDLINVSTWMSANKLTLNNKNTEFMVIGSNKRLGQIIQEPSICARGTEIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JUM8</accession>
    <name>A0A6S7JUM8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serine threonine- kinase roco5, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A000535</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the small GTPase superfamily. Rab family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010819">
        <property type="protein sequence ID" value="CAB4020172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JUM8"/>
    <dbReference type="OrthoDB" id="5953486at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020859">
        <property type="entry name" value="ROC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47978">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08477">
        <property type="entry name" value="Roc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51424">
        <property type="entry name" value="ROC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4020172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="38434" checksum="9B26F816A6713B29" modified="2020-12-02" version="1">MKLYISFLCLFNLESLAISSGRSTQSCIADDITDDEEKDTLDCSSAVVERNPNVILKKREGGQISEVSSDLLPCEVIARGEKAIAAFKTALAEGTSSASRLKIIVVGDVRAGKTSLIRSLSGQPFIESREKTHGIQTTSIVESIVQNTELNILWTLADTNESHLDRLIARVVSDILKEMAEIPSRQIPELPPSPGEFNANQIMTPMASTSKGFYTPPKQMPDSQVLITEPSIPVEGSPRKLPASLIAKNLLSERDETASVKVNFWDFAGHQLYEPMHHLFMNSRSLYLVVFNLYKMFKSPLKSLCGIQYWLNSIASHTTAGTPIILVGTHKAQVSNLKLNVEIEKECVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JWN2</accession>
    <name>A0A6S7JWN2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A020084</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011146">
        <property type="protein sequence ID" value="CAB4020832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JWN2"/>
    <dbReference type="OrthoDB" id="8948150at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP9-like helix-turn-helix" evidence="2">
        <location>
            <begin position="220"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="3">
        <location>
            <begin position="296"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="176"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4020832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="462" mass="52193" checksum="2C4F2B9B0275DD15" modified="2020-12-02" version="1">MDSVMIALKKLKIFPCQLLMPSTPLPNGLSYDSTEEIEDLSLPALDASTPLPNGLSYDSTEEIEGCIWEPRRQKVYLENLPYDDFDKDPPRPLDCNNTVSAKSSSVDKGPNFPSLMPSRQEVHLENVAYDFDTDPPHPLDVHIHCTDNAHTSATTSRVDEDTMHSPAPQRHNNINTQTKTKTTSPTKKYRTLLARQRKRVQRLRQALNKKKKRDISRKAALEVLQTVLPERIVKFIEVQMHLHTRKNGGKRYTPEMKSFAISLYHVSGKAYRLVSKFFNLPSKSSLLRWVSGLPISPGISQKALDAIESKVKCMSDAGKLCTISMDEISLKTSLMYDSRRNEVVGVEDFGNGHRTNRLATAAVVFMARGITSNWKQPLGYYLVHESCPSSILKTKLFEIIGQITSIGLKVHAIISDLGSNFQKRLREMNITPTAPWFMYNGRKIFYLFDPPAPNKGCQEQLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXX6</accession>
    <name>A0A6S7JXX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021612">
        <property type="protein sequence ID" value="CAB4036011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXX6"/>
    <dbReference type="OrthoDB" id="6064907at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11957" checksum="0705877310C9DAEC" modified="2020-12-02" version="1">MPNRAGRKRRDVANLENYLTKKRGIVQIKNKDDLCCARAIAVAKAKLDNDPQYKSIVSRTGTLQDRLAQEIHASAGVPLGPCAIPEVKKFQRDLQGTFKRYDLFRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXZ6</accession>
    <name>A0A6S7JXZ6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycosyl transferase family 25 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A009634</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 25 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020651">
        <property type="protein sequence ID" value="CAB4035044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXZ6"/>
    <dbReference type="OrthoDB" id="47375at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050211">
        <property type="term" value="F:procollagen galactosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06532">
        <property type="entry name" value="Glyco_transf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050757">
        <property type="entry name" value="Collagen_mod_GT25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002654">
        <property type="entry name" value="Glyco_trans_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10730:SF53">
        <property type="entry name" value="GLYCOSYLTRANSFERASE 25 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10730">
        <property type="entry name" value="PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01755">
        <property type="entry name" value="Glyco_transf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyl transferase family 25" evidence="4">
        <location>
            <begin position="330"/>
            <end position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4035044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="521" mass="61060" checksum="BE3E604C70B0665C" modified="2020-12-02" version="1">MDFRRGICLFAWLLFVCVNAEDEQKLLSNYNEYQVLEPRIFLPIIARNIEHSLPNWLGHIEKLDYPKNRIYLWIRSDHNEDETASILHDWVDKVRPLYHGIDINTTNIDDKYEDAISANHWSLLRFKRLIDLRQAALDEARRLWADYIFFLDCDVYITHPNTIWSLLEERKAIISPLVHSFVKKSAFSNYWCGRDEKGYYMRTDEYLPILKLENKGCHEVVMLHSVTLIDLRRTATTKLYYKPEGSNYDGPIDDVMVFAHAVKEAGLKFHILNKDYYGYLIEPMPGRATLYDAQMKFQHVKLELIVDDIELAESAYIPVKYPVADKAGFDEVFVINLERRPDRRKKMRLSLQLLGINGTFIAAYDGKRVSDEEIENLGIKVIDGYADPYHGRPVTKGEIGCFMSHFLLWEKMVRENLQVVMFLEDDIRFEPDFRKKLEGLMTEAKQVEWDFMYLGRKLVNEQAQDTGIDGIQHLVRPGYSWWTLGYVLTLEGAKKLLAPKPLQRFVPVDEYIPIMFGDHPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYQ0</accession>
    <name>A0A6S7JYQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026733</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021857">
        <property type="protein sequence ID" value="CAB4036271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYQ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21618" checksum="AF0B4004007F4D45" modified="2020-12-02" version="1">MEETCGYHSHQYVIDENKPLPIRPQSTISSPHCLDYDKTEQQQEFNQQSRKNPSVTRWSTSLSNVRMPDGNSGPSKCRPTKEIGCLSKLDHPENLKKIIGRLPFGMRLKWRDAVDRIVENEGRDVTIKDVTSFVTARARAGTHPVFGRVVNEGRGKQRETQTSIWSKSKRVCNARRLTSPQQSRIEQTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZN0</accession>
    <name>A0A6S7JZN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048426</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020470">
        <property type="protein sequence ID" value="CAB4034840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZN0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="115"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="232"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="127"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="255"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="34604" checksum="51CB0488F73D811D" modified="2020-12-02" version="1">MDLEISQIMEQLRKARSTAKGNVTRKANKLNELLTACDNVDTIKEIANDLDEVSIQFQSAHEAYHSLLKEEQDLNDSTVYFNSVDELVSELKTKTKLWLEQPVTQFQENQIQPHDSVSTVGSHKSSRFSTRSKTSSIKSTSSAKAKAAAKQAALEAKANALQKLHELQFEELKIQQRKSQVELQGAIAAAEAQKIVFEQCEAEELRLSQEENRPLSVHPHHISTTSVVDVVPANHPAPLQSPRAQAKYQPKETPVKQQRQQLNPSVPQWLPNQSSLPHHHDGYPHDYPLQRLMETQDRQSSKVSWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0U6</accession>
    <name>A0A6S7K0U6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049528</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023523">
        <property type="protein sequence ID" value="CAB4037837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0U6"/>
    <dbReference type="OrthoDB" id="9902985at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="437" mass="49357" checksum="D1A1DAA20FBBC981" modified="2020-12-02" version="1">MGPLNSKDIKNKLKSLANSATGKDRVEYRHLKLVDPDCKILSIIYNKCLAEKKIPSSWKESATIMIYKKGSSDDPSNFRPIAFTSCLCKLFTSLLALRVTNFSIQNNLMSPQQKSARPAEGCHGHTFTLQSIVADCKQNQKNCFFIWLDLRNAFETEPIKVTAGVKQGCPISPVLFNLTSELLIRTALSRSQDNPSIPFKLHNQPISILAYADDLVLISRTREGLQVLLDDISLAADVLNLSFRQDKCSTLSLTCFKKDLSRVSEYEFIVQHNPIPFLKREESYRYLGVPIGLLYDAKDIQSITAKLISDLDKIRDSLLAPWQRLDAIRTFVQPGLTYALISCPVTHEALKEYRSKLIEVLKSIYHLPKHASASYFFADKSDGGLGFLDRFDKRHVQTIVHTVKILSAKDPLIHNISRAQLRSVVYCCINVEPYNND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4P9</accession>
    <name>A0A6S7K4P9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012401</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012206">
        <property type="protein sequence ID" value="CAB4022881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4P9"/>
    <dbReference type="OrthoDB" id="8048611at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="24676" checksum="B687908FDBB34026" modified="2020-12-02" version="1">MEKGDQDHRESVPQTQKAKIAKEKRRRKEVLDWKVEARKWKKESRRLRRNEKARERRAEQNRRIGEGKWKGKKKFGRLQLKLEDKLSKIWGRRSKQTSSTHTAERFITNKKTIINIKNENNMCFKYAVTRAFHPLERKADVVSKLLKKQSEKYNWAELLFPVAVKDVKIFSKNNDIGVNVFGIEEVMETDPEGDRRRNRLRIDDGTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8C9</accession>
    <name>A0A6S7K8C9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024944">
        <property type="protein sequence ID" value="CAB4039094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8C9"/>
    <dbReference type="OrthoDB" id="6021789at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="228" mass="26219" checksum="69A982784A529127" modified="2020-12-02" version="1" fragment="single">MSTICLLIEQHFPLRRKRIRKQTHPWLNGEVLRLMRARDQAHKKAVKSGLICDWNEYKHLRNRVTSVNRKARRNYFSNKLYENRSNPRAFWNILRSVLPSKSNRSVINKLVVNDKELTNKKDIANSLNEYFTTIASTLLGNRPSLDTELCPIEQPINNPTSTFKFQSLCEADVSYALQTMDSFKATGADNIPAKVLKIAAPYISKVVTNIFNASYMSGKFPSIWKVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KK93</accession>
    <name>A0A6S7KK93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011215</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043633">
        <property type="protein sequence ID" value="CAB4045945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KK93"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="16842" checksum="3AE3F1043D73AAAD" modified="2020-12-02" version="1" fragment="single">MDDTTSSLLSSITRSNLSTAYDDAKKLLVKEFSLSRYDRVKAYLEAVPGPDEKLTIFNSRIESLIDGLSFEDVSKFCILRHSPAAVRLQLSGLSFDDKSLADLLKEADSLAQRATIDANIVAAVYNKSKKEKNICSFHRKFGKEARTCTGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLG7</accession>
    <name>A0A6S7KLG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067589</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031512">
        <property type="protein sequence ID" value="CAB4043100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLG7"/>
    <dbReference type="OrthoDB" id="412006at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="152" mass="16901" checksum="7EBA71EAD5F1310E" modified="2020-12-02" version="1" fragment="single">MKDTNTKKWWDNIKLLSGLSNPSTLKSMIVNGAVLKDADLVEAINKSLGRVADDIPPLKFTPIPVSHIPDKYINSPEAIECSLSGLQERKSVGPDGIPNWLLKNFASELPMFKYVDDSTVSEVLSTKEMDSLTIQQEIDNINQWSTDGLERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KPP6</accession>
    <name>A0A6S7KPP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC109615404</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015831">
        <property type="protein sequence ID" value="CAB4028932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KPP6"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="252"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="410"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="188"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="257"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="271"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="412"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="441"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="450" mass="50383" checksum="19F2FF08F15DC676" modified="2020-12-02" version="1" fragment="single">RYIILGDEFILMLNPNEEEVNTEEISMATTLDLKPPPPFDAEGDNSSLAQRWKEWRKRFNMYTVAANIKDDAQKRAVLLYVAGPSPQKNVIYERYVFKQTHPTPGESVDSYITRLRTLAETCEFESAENEIRDQFVMTCSSHGFRTKLLRETDLTLAKLITMARAKELAEKQASNISGHNNSRNNVNRVKDEGNDEAKDKVRHAKYVLKPHKQNQCRNCGNEFKQGHKDVCPAKGKTCRACEKLNHFARVCRSQKNPPKDSKKDSRESVRVAQQQTQKQSPPNSSDDEYTFAVSSSKITNIQIQINGTPIAVTIDSGATTNILDSEAFACIRKRNKHVQLEPTQTNIYAYNAVQPLPLLGKCRLAVESNGKRTISTFYVVNGKAGSLLGNETAAELGILKIKVNEVSKFHSTKTTGSRGRNEINTGSHSNGSDANSQSDSGNREIRDRNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LH97</accession>
    <name>A0A6S7LH97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022980">
        <property type="protein sequence ID" value="CAB4037353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LH97"/>
    <dbReference type="OrthoDB" id="5963582at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="269" mass="30930" checksum="9EC4BB38B10EFEC8" modified="2020-12-02" version="1">MSCQEKVVEIPLNKLEIEENPTAADIVRGKDDSYFIIRQTVSEVEHDRNQTDTSTVTTNYVSHQPDAFIVPAPAKDKSKKNPEHPDKKDARKYKKDIKVETMHISCKSDTYQPGHNYGGIMIYQYDGKSEWRTENNTHCETGYIVIQDTDSENVKQWIGKEPGKVHGAVYKNAFGEAVKAEVVGEGFSIQNGIFSIFDKFEKKSGVFNSPKNSEYHDNNPDMHKVSEHCVRKIVKYWKSAGPSWVRQRNFEVEELMKDFDKKKWSCNIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LHL0</accession>
    <name>A0A6S7LHL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048997</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018176">
        <property type="protein sequence ID" value="CAB4032159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LHL0"/>
    <dbReference type="OrthoDB" id="49113at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043136">
        <property type="entry name" value="B30.2/SPRY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037962">
        <property type="entry name" value="Neuralized"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006573">
        <property type="entry name" value="NHR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12429">
        <property type="entry name" value="NEURALIZED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12429:SF8">
        <property type="entry name" value="NEURALIZED-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07177">
        <property type="entry name" value="Neuralized"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51065">
        <property type="entry name" value="NHR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17455" checksum="770C98A4C243BE18" modified="2020-12-02" version="1" fragment="single">RLGITTCSPDQSSINIVRAATDLFSDDCQDFWILSGSRLHHGLNEKDYNLNLHSLKVDSRVGIQVTQNGHLVFYADGMCMGAAASDIPTKKPIYCIFDIYGRTKVVSKELFQAEKLEELCKKKVKKHVNDQDVDKLFLPKYMLEDIKKMSKPDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LP83</accession>
    <name>A0A6S7LP83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021931">
        <property type="protein sequence ID" value="CAB4036349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LP83"/>
    <dbReference type="OrthoDB" id="5986027at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="15807" checksum="5749E645D544113A" modified="2020-12-02" version="1">MWNDSKDSKNSEKPKNFEKSKKSLPVIEVTLSENEPQRFSIIPPEMLKSSSEVSMGGPGNEDTGTLKVSDNFTEECMKLLNNNLSSASEDNNDEYNPAEKDVERYGSLPEADRRSPEVDDGRNSLPEAEGPSPETDKLLQIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS57</accession>
    <name>A0A6S7LS57_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tripartite motif-containing 2-like isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A006758</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027092">
        <property type="protein sequence ID" value="CAB4040669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS57"/>
    <dbReference type="OrthoDB" id="5951542at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047153">
        <property type="entry name" value="TRIM45/56/19-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027370">
        <property type="entry name" value="Znf-RING_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000315">
        <property type="entry name" value="Znf_B-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462">
        <property type="entry name" value="BONUS, ISOFORM C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462:SF296">
        <property type="entry name" value="MEIOTIC P26, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00643">
        <property type="entry name" value="zf-B_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13445">
        <property type="entry name" value="zf-RING_UBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57845">
        <property type="entry name" value="B-box zinc-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50119">
        <property type="entry name" value="ZF_BBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="230"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="359"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="56"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="73"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="230"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="245"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4040669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="403" mass="46038" checksum="B85FDAEDD95F32A1" modified="2020-12-02" version="1">MASKLERRSTMSPNKIERQRTKSPRPKSNYAASLRLKHNNMKSLDVYKASSVVSKMRSRSKTRKKTPVLKVESPPPPPPPPPIRTPTPEPEPEPEPEPEPEPEIEPEPEPEPPVDPLEHFTTCQVCKSPFVDPKTLSCLHTFCKSCLFYEWPDCEGKKTANCPSCNEGFEVTNADEELEPTPFVKRMIQIKTIEDLTKNLEMSGDKNTEFAQAVKDMECNCTHKTETKDSDKVERKDSDVENRSEGSLTSKDTDSTQPVKCDECSSSTDVQLSSTQMEERQPGNCDKHADNILDYFCSKCDRFICIECLITEHPHFQHGVSKVSDVAPRYKEVLGMLKTEAEYTAPELSRATDIYKDRALRTEEKLDNFKDKIRERKEEMLREVVLSLDEEEKRLVIMSHQPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVD3</accession>
    <name>A0A6S7LVD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010953</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039321">
        <property type="protein sequence ID" value="CAB4045413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVD3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="15989" checksum="C3850BA368CAAD87" modified="2020-12-02" version="1" fragment="single">KHPSKHSAKSVKILNEDSGVVNDDSCNFLPKQLRIFQNENKLPEKLLKDLIHTLKSDTTASNTARFLAKILNSDGNNNFSCLNENPGSLVSLQLGNTNGIHLLSDVKKRQRHEAQRLRIMRTIVLAYDTVWNERVKKISTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVN7</accession>
    <name>A0A6S7LVN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084458</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042572">
        <property type="protein sequence ID" value="CAB4045863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVN7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11130" checksum="EE4F00CE5B63EE21" modified="2020-12-02" version="1" fragment="single">MTEGSEDVKLVADLNAKLKLLKFTRNKTGSITTGSIITAMERHLKALNTVLDDVDGLRKNVEQSKFEKGEEPEAVAEWGAELDGEIGKTDEVITALKNAITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5H4</accession>
    <name>A0A7D9D5H4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041112</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000022">
        <property type="protein sequence ID" value="CAB3976966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5H4"/>
    <dbReference type="OrthoDB" id="5984733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28604" checksum="5E68776C3640D541" modified="2020-12-02" version="1">MKDAVSNILEQFNNHFGKYPKFAQFDQGTEFYNKEVKSLLNKHNIEFFSTYSGKKAAVVERFNRTLKSLMWKYFYSASTYKWLDVLQDLTDNYNSSVNRSIKTTPDSVNEFNWTKVWKTLFSHNLGKPSEPKFAVGESVRISKYKSVFTKGYEANFTEELFTVTEVYHSHPNTYTIKDSADEPIIGRFYEQELYSAEGREPDFRIEKVLRRRTVKGKKMALVKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6X0</accession>
    <name>A0A7D9D6X0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061810</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000077">
        <property type="protein sequence ID" value="CAB3977876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6X0"/>
    <dbReference type="OrthoDB" id="5989546at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16615" checksum="DCCA157DD9430A0E" modified="2020-12-02" version="1">MKTSWTDATKEEQKMFTEKATEACQVICNIISPSDGKSLFQAVQEHKRDCNLDFLTTAYRNTTSKKIKTQILTLYAYEYPASKLIEMHSSFEKLSERQIKKARAHAKTFGPGTPVETKKHRIYLNKFLIAHISIKMCPTEHGSLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D748</accession>
    <name>A0A7D9D748_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000049">
        <property type="protein sequence ID" value="CAB3977465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D748"/>
    <dbReference type="OrthoDB" id="6436262at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="148"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="424"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="496" mass="57103" checksum="2F0235525AB1CD6C" modified="2020-12-02" version="1">MFVRETNECEQLYSLDVLGVEDRSEKDQMEVLTDFRESVTRQEDGRYEKLSKDRSLKVEYEKIVKDQLANGIVEKAPEKPAGKRTYYMPHKPVIRENATTTTTTKIRMVFDVSAKPAPLANSINECMFTGPSLQPLLWDILIRARMTPNLLLADIQKAFLQIGVKETDRDAFRFLFEIDGKEEHFRFARLPFGVEASPFLLGATLGYHLEQQPTRFEETVTALKENTYVDNIMKTGSDTDDLRKFKEESSIILEDAKFPIHKWESNIACLEDENMPNPSKILGHVWDKQEDTLEFEAATMPENQPVTKRSILSRLGRVYDPLGMVSPTMAEGKHIFRDACEERKGWNAEVSESLKRKWIKWNNQMKNVKVPRAITKKSDVIEGIQLHLFTDASNLACCAATVAVVEHKPGTVKDEEDELTKMQRRLRKAKDDAWKRWKREYVHSLLESQRVNNKVVEAPQIGDVVLVVGEEKNRGEWKKGKVLRQVRGKDETLRVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9Z3</accession>
    <name>A0A7D9D9Z3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029037</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000296">
        <property type="protein sequence ID" value="CAB3980501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9Z3"/>
    <dbReference type="OrthoDB" id="5987913at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044822">
        <property type="entry name" value="Myb_DNA-bind_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47595">
        <property type="entry name" value="HEAT SHOCK 70 KDA PROTEIN 14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47595:SF1">
        <property type="entry name" value="MYB_SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13837">
        <property type="entry name" value="Myb_DNA-bind_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50090">
        <property type="entry name" value="MYB_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="168"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="210"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="168"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3980501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="29544" checksum="793FBD4FB6C0ABAE" modified="2020-12-02" version="1">MFHSLGTESVVPAIENNRGKPTQNNQDVRKAPSLGNHTATNPAEICFLSSDNQSQKWTKPEVQQLLILYKAHEEKFHDPKWKKISIWKEIAKEMNQHGYSYSDHKCQVKFKNLKQTYVKTVDHNSKSGNSFKTCSFFDELNEIFACNPSVVPVAECSNRKGYKVVKEAPDKEGTSEENSHSLTDKGIAIKDGELKKGKPAKRRFSVTESLISIQDEMKKENEKRMEKMEEMHKEKMQRFDRLLNLYERDLSNDADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DDL5</accession>
    <name>A0A7D9DDL5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022361</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000526">
        <property type="protein sequence ID" value="CAB3982637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DDL5"/>
    <dbReference type="OrthoDB" id="5984880at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13489">
        <property type="entry name" value="Methyltransf_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="36673" checksum="683E4D39E2E44567" modified="2020-12-02" version="1">MANSQEHSHDDCSKHEHEDDKWIQIERVYEEKSNEEESLIDWLTKNVDLYLPSVVADGVTENTTSDENYSILSFGCGSGTKDRAILAAISSRLSEETKIVYHAVDPVASQIEKFKKAIQNGYEIQEPFKKVRFSFFAQTYEDYMQNRSKDEGVPSKANLILFIDSLCHFTSSAEDALVHCYNNVVAQDGVILVTLWNNQDFWFKIREIYGKNRNSERKEEESNDYLTIQEVEEIVKKHGWNFKLFSPEYSLDITECFNSTSEAGKHLLDCLACFSNVKDEVDSDPKKLFNFLQESQSISENEHLLKGRHGTLVIYKQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXA0</accession>
    <name>A0A7D9DXA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">COUP transcription factor 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A078537</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002670">
        <property type="protein sequence ID" value="CAB3995472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXA0"/>
    <dbReference type="OrthoDB" id="40902at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.565.10">
        <property type="entry name" value="Retinoid X Receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035500">
        <property type="entry name" value="NHR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000536">
        <property type="entry name" value="Nucl_hrmn_rcpt_lig-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050274">
        <property type="entry name" value="Nuclear_hormone_rcpt_NR2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001723">
        <property type="entry name" value="Nuclear_hrmn_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24083">
        <property type="entry name" value="NUCLEAR HORMONE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00104">
        <property type="entry name" value="Hormone_recep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00398">
        <property type="entry name" value="STRDHORMONER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00430">
        <property type="entry name" value="HOLI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48508">
        <property type="entry name" value="Nuclear receptor ligand-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51843">
        <property type="entry name" value="NR_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3995472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="28933" checksum="760BA81CE2BA8555" modified="2020-12-02" version="1">MDSHKESHHFPFIALRHQRFPHIFQADPTGIAKLASRASPRSECRRNSSASEPAETHIETASRWLFMSIKWAKSLPYFAELYYPDQLELLRQNWSKLFLFNLMYFEMVPKPDDSEDDVSGALRDVFVRWSEANLRPEIPGKIEHSLEKIRRLHMDETETLLVKSLLLFNPETEGLVDASQVQVTQNKCHRALEEHASSTNPGERDRSGRILLTILTLSTFEERDIEAMFLSAVLGNATVTSLMENILCADTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E0C8</accession>
    <name>A0A7D9E0C8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003360">
        <property type="protein sequence ID" value="CAB3998455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E0C8"/>
    <dbReference type="OrthoDB" id="10040049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000082">
        <property type="entry name" value="SEA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036364">
        <property type="entry name" value="SEA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01390">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82671">
        <property type="entry name" value="SEA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50024">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="667"/>
            <end position="690"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="342"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="422"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="237"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="257"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="342"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="422"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="443"/>
            <end position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="802" mass="82300" checksum="3BAD22E23F374E14" modified="2020-12-02" version="1">MTHVFFIITGTSIAYTHSVSASSQSVSASSQHVSTARQSVVGQSVSASGQSVSASSQSVSASIESVVLSRSTTQLLDTVRTSSQSVSASSRPVSASIQSVSASSQSVSASRQPVVLSHSTTQLLDTARASSQSASASSHSVSASTQFASASSQLTSPSSQSVSASSQSVSASSQSVSASRQPVVLSHSTTQLLGTLRAPSQSVSASSQFVSASSQPASPSSQSVSASSQSVSASSQSVSASSQSVVPSRSTQLLDTARASSQSASASSHSVSASTQFASASSQLASPSSQSVSASSQSVSASSQSVSASRQPVVLSHSTTQLLRTLRAPSQSVSASSQFVSASSQPASPSSQSVSASSQSVSASSQSVSASSQSVVPSRSTQLLDTGRASSQSASASSHSVSASTQFASASSQLTSLSSQSVSTSSQSVVPSRSTQLLDPARASSQSVSASSQPASPSSQSLSPSSQSVSASSQFVSPSNQSVSASSQSMSASSQFVSPSSQFVVLSRSTTQLLDTPVRASSQSVSASSKFVVPSRSTTQSMSSKAAPTPTTREPLIIEVSLTFVNRKFHEDLLNKQSLKFLEMKEEVELQIKIAYKNTTGFISVTISSFRPGSIVSVGRLYFANSSNKDVSQLEQTLSDYGTTTGEFTVSKFDEATGDDDDDRLDWWQIGVIIAGVVVFILLITVVVLCRKISNTKKKAEGNMSPYTGPFYQNIGEDEEMKTLRASPSKINAGMNSTLGNDDMESGQRSLNMYSSTSSTDGLVNQTASKVAKDNIGAEVVPESDYVTIMDAGVSAGDVVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E2K0</accession>
    <name>A0A7D9E2K0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024956</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003509">
        <property type="protein sequence ID" value="CAB3999074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E2K0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11029" checksum="E82098E577B15F90" modified="2020-12-02" version="1">MKLSLVFVVVVLSVVVVFNEACNPGGNTRRTPPTERPTSRPSTVRPNKIHRRIFRFIVTSKPALKKTCNAPNECLTDCGVNKYVLGRYGCTGGSWCCASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E964</accession>
    <name>A0A7D9E964_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A027927</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005035">
        <property type="protein sequence ID" value="CAB4004889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E964"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="66"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17443" checksum="DB7B3C2A3A043A26" modified="2020-12-02" version="1">MSVTRSSKVTTKPSSLAESAKSKDQSNEIQTAMQVEISKFLKSDEFKILLKESIRGVISDMVQCAMKPLQDKIVELEAKVEKRQEKTNDNEQYSRRYSIRIYGLSQAPGLVQEGVDGVVPKENCAQTVIDFCKAELGVIVKREEIDRAHRIGRPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAQ2</accession>
    <name>A0A7D9EAQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051998</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005341">
        <property type="protein sequence ID" value="CAB4005880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAQ2"/>
    <dbReference type="OrthoDB" id="8045002at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="597"/>
            <end position="651"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="679" mass="77023" checksum="B6DE037B31A75D6F" modified="2020-12-02" version="1" fragment="single">KFASDLKEKCHLLLSSSKEALTCEENVLKQTSEKSVEEESSIVTNDPAERIGVKLNESQKNFLIALGPCQPILESYPTNQTIAKSKQNSFTSKCLFGEGSGTSCSWTKDGANRWDKMKGRGKSKQGKLVQHFTSAAHKASVDRFDIFSKRSHHVDVALSNARKQLLAQEERERLHNREVIKVILDCCRYLSRQALAFRGGDDDLNGNFRQLVNLLSRWIPFLKTWLTTVHLRPNRVTYLSGKSQNELINLLAVEVRNILTEQIRSSAVYAVLADTTPDVAHADQISLIIRYADAEFRIQERLLKISEISSKTGDGFSQKVLAMCYDTTASMSGVYNGAQAKLSEHLERKIPYITCLGHKTNLCVEHSCKSSVMIEEFFTTLQELYNFLTKSTSRFGKLKSKIESLQEGLIMKNLSQTRWIGRAESIKAVWVSYETVIGTLHDIHECDETDGDAKKTATNLLDKLKSFEFYVSLLFMKNVLYKAKIVVMEVQEIEQDILAGVEVLQQTRNEMLRMREDDALLWRELYQQQPRNASPMESMWTNLPNCSKQEVENLCAAFPQDFKDPDAMCAEIKLISSDIEKSGAKNLKEAAKCVLGKQQFYPNLTKAYQLALTIPVSVASNERSFSKLKLVKSYLRSTMKENRLDDLMILSSSVDILDELELDKVANSWSLYKSRMIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDD3</accession>
    <name>A0A7D9EDD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A041354</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004959">
        <property type="protein sequence ID" value="CAB4004643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EDD3"/>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049:SF1">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="47"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="124"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="283"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="390"/>
            <end position="771"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="392"/>
            <end position="765"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4004643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="771" mass="86913" checksum="A6D1747C8BD2EFA9" modified="2020-12-02" version="1">MVPHAKDKFPHAEDKVPQAEDKVPHAEERFLTLRTRFFMVPHAEDKIPHAEDKVPPAEDKVPHAEDKVPQAEDKVPHAEERFLTLRTRFSCLGQGKVPHAEDKIPHAEDKVPHAEDKIPHAEDKVPHAEDKVSHAEDKVPHAEDKVPHAEERFLTLRTRFLTPRKGKVPHAEDKVPHAEDKVPHAEDKIPHAEDKVPHAEDKVPHAEERLLTLITRFFMLETRFLTLKDKRFLTLRKGKVPHAEDKIPHAEDKVPHAEDKVPHAEDKVPHAEDKVLHAEDKVPHAEDKVPHTEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKAEDKVLHAEDKVLHAEDKVPHAEDKVAHAEDKVPHAEDKVLTLRTRFLTLRTRLLTLRTKVPHAEDKDKVPYAEDKVPHVEDKAPHAEDKVPHVEDKAPHAEDKVPHAEDKVPHAVEKVPQAEDKVSHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVRHAEDKVRQADDKVPHAENKVPHAEDKVPHAENKVPHAEDKVPHAEDKVPHAEDKVLHAEDKVPHAEEKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKIPHVEDKVRHAEDKVPHAENKVPHAEDKVPHAEDNVPHAENKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVLHAEDKVPQAEDKVPHAKDKVPHAEDKVPHAEDKVPHAEDKVSHAEDKVPHADDKVPHASSGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EH65</accession>
    <name>A0A7D9EH65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034276</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006435">
        <property type="protein sequence ID" value="CAB4009393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EH65"/>
    <dbReference type="OrthoDB" id="5984683at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="384" mass="43304" checksum="29D920E5F3D56B40" modified="2020-12-02" version="1" fragment="single">QTTSTSKKGVNSKYSAVPSESPILAQTNLEVGEAMVIESSFVGADVSLELNERLHETTLSVIEEVNNDDQNVERQSDSDSIHTNEDDLSYLDSDNDEMLHLEGDVMMPDDHELEEADEPSSDLPQQSHSTSVTYGPHRKLSRGDELYAMQEESKTVQEKKFVCSLDLLLYLFQSRCQTPGCTAKPDTKYHFVGITVIVNSRCSSGHNYRFTSSHELNDIYANNLQTATSIMLSGSNFAKAEQMAKFLNLEFISSSTYYRFQRLYMIPEINEWWSSMRSEIIGQFHGKDVVVGGDGQCDSPGFNAKNLCYFMVEVESHYILDIEVLDKRHVDLKSTNMEKEAVHRSLDRLRNDLKVVELVTDASTSVKALLGMLNHQFITLKGLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESJ2</accession>
    <name>A0A7D9ESJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066019</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008579">
        <property type="protein sequence ID" value="CAB4015097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESJ2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="942" mass="107365" checksum="A19F018C48AFAB28" modified="2020-12-02" version="1" fragment="single">MVKIEELNRKRSSAKKKFDHEVKSFEFVLEARPEIHSLEEAFGEVKVKYKAVREIHDGITDLMVEADIEEADFTNHDIFVTELIAKYGDLLSKLEQYRRKCEVDQTSKGLVPTEMEPKQQRSNPERIKVPQFSGNIKIYRTWKRIFEDTTKRNYENERSQLARLIEAIQHPLRYEIECFTTTKAIWEFLDKLFGDDKELIKILMNDIKTMKPLKVKDAKSIRNLVAMEDVGASDETKSRYVFADILAKLTVEDQRAYARSMIDTKKIESLHTLLEYLEEEAKIMASSQSDQRSSKIGIYPVNVDGGYNGGYNCGLGCSQQHGLGYCPAFKKMKVKENWEVVIQSKRCKKCLRTGHRQCSRKACDINSCERPHHYLLHKDPKQVDNRNLNPDAQPFKPDQDEATGTGKSNQIEFAEKLGVVGESKKMKMYVAGGGIRVEDSAEFDLKISPCYDEDIVFNVRAYSVKQPRQAAKTISKKAVVRFPHLVRIVEDLHLNGGPVDILLGTDLPEAHRDFKVLAGNPGEPIAKKNIFGWSVLGNLEENSTPGIFAVETIDDITKDQDIKKLTFQDQLGIKPTGHCTCSEKEMRECAFIRHVRESTRVLDDGRIEVRMPWKPGHPNLPNNRSIAFERMVSKERQLVKKGKLEAFNKEVKALVDREVVINLKQEEVDPAEPAWYLPIGEVESPDKTTKCRLVFDAAAKMDGLSLDDALEKGPCLMNSLFDVLIGWRQNGVTFAGDDSKMFNEIAIHPDDQKYHRFLWRDGETDREPAMNAINLLADRAQVKSPEVARILKDNTYVDDVAGPETSPEKVKKVVDGIDTILGKSKFAIKAWHSNSPEIDQDGNENPANLLGHQWNMKTDSIALKSETVYTDFSYCTKRKALGVVSQLWDLLGLMAPVTIRFRIDLQNLYQWDELLPPEEKLKWQKNVGVGDLVLEIDGNRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWJ8</accession>
    <name>A0A7D9EWJ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cation channel sperm-associated subunit gamma 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030976</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010418">
        <property type="protein sequence ID" value="CAB4019351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWJ8"/>
    <dbReference type="OrthoDB" id="5956881at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036128">
        <property type="term" value="C:CatSper complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097228">
        <property type="term" value="C:sperm principal piece"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028246">
        <property type="entry name" value="CATSPERG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053873">
        <property type="entry name" value="CATSPERG_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14327:SF1">
        <property type="entry name" value="CATION CHANNEL SPERM-ASSOCIATED AUXILIARY SUBUNIT GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14327">
        <property type="entry name" value="CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22846">
        <property type="entry name" value="CATSPERG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CATSPERG C-terminal" evidence="1">
        <location>
            <begin position="137"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="364" mass="41119" checksum="14D00AA3B228ADE0" modified="2020-12-02" version="1">MAIAVKNFYNNGSVYWSSLHNLKLSYKASHLESLNVSAVRNVYNHKGTVQYKFSLKDSDLTKIKTAPGIDLRPVQFQVQPWQADETCFVRNTGKGVLRGTQSMTVLLGCPPSMKIEFDPEASVNTSGKNQFCNKKYGIACFLYEHTFHPVFNIVDESTGSMTRFTEKYHLAIIGGGKDIYSIEEYTESDVALFNYQTHGSTSTLIWTPKAKNLGSIPSFNISNNGLQWLCGRKSPCSEISPVFPHSPEFYFKLEFSTRDTEDDNLNCDLTAQFIIRIHGLPLGSLYPATVIVATCMAFITAYVFTMYAFKRNNHKLWNLTRDFVHTKKMMGEIWIRQKIGRAKVEPAIETSVEDCDTDGRKGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWK2</accession>
    <name>A0A7D9EWK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ras-like GTP-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A017378</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010748">
        <property type="protein sequence ID" value="CAB4020039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWK2"/>
    <dbReference type="OrthoDB" id="8830751at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007264">
        <property type="term" value="P:small GTPase-mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00157">
        <property type="entry name" value="Rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003578">
        <property type="entry name" value="Small_GTPase_Rho"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24072">
        <property type="entry name" value="RHO FAMILY GTPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51420">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4020039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17668" checksum="BE6A664FF49853EB" modified="2020-12-02" version="1" fragment="single">MAANSSRYHMATLKIVLVGSEAVGKTSLLIRFHQNTFPSLYVPTVFDSYWKEVSVDGNEYGLLLWDNSGNDDYIRLRPLSYPQTDVFLVCFDINNRESFVQLQNTWLPEVKRYQHGTPIIIVGNKMDIRSESQLENAANDFVLHVEGVRLALRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EX74</accession>
    <name>A0A7D9EX74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028688</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010359">
        <property type="protein sequence ID" value="CAB4019222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EX74"/>
    <dbReference type="OrthoDB" id="10066972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33480">
        <property type="entry name" value="SET DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33480:SF1">
        <property type="entry name" value="TYR RECOMBINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20583" checksum="CD3782437A219E30" modified="2020-12-02" version="1">MLGAFRLEKEGERDRQLVSQKMKELGGLLQQLMVVENNEAVQLSDFIKPEKFDIIIKAVRETTGFIPPNRGQEEVNIPSLALKLWHSLLKCATLLHNQAIRARNDLVLKEIKYFQKLMRSEWEYKISHHSLSTLKERKMNAVQVLPLTEDMRKLRKFVEQGITETSRQLKLSPTSEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H989</accession>
    <name>A0A7D9H989_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050911</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000028">
        <property type="protein sequence ID" value="CAB3977079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H989"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8854" checksum="C2CB626A30DE7D70" modified="2020-12-02" version="1">MNDNNQVGAFNGEYSNEWKNAMQSEYNSLLANNTWELVPPPENKNVIGSKWVYKVKRNADGSVERFKGRLVAQGYAQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTH7</accession>
    <name>A0A7D9HTH7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Cyclic nucleotide-gated cation channel alpha-3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A059018</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002232">
        <property type="protein sequence ID" value="CAB3993309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTH7"/>
    <dbReference type="OrthoDB" id="421226at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005221">
        <property type="term" value="F:intracellularly cyclic nucleotide-activated monoatomic cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044877">
        <property type="term" value="F:protein-containing complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.10:FF:000002">
        <property type="entry name" value="Cyclic nucleotide gated channel alpha 1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.630:FF:000001">
        <property type="entry name" value="Cyclic nucleotide-gated channel alpha 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.630">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050866">
        <property type="entry name" value="CNG_cation_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45638:SF13">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45638">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="cAMP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00888">
        <property type="entry name" value="CNMP_BINDING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0407">Ion channel</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7" id="KW-1071">Ligand-gated ion channel</keyword>
    <keyword evidence="6 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="111"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="156"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="288"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="622"/>
            <end position="651"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="622"/>
            <end position="648"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="671"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3993309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="671" mass="77998" checksum="276171F5C43F1A51" modified="2020-12-02" version="1" fragment="single">MADVALEVLQNLGEEAKDVVYYEALHRVHGENNDGQGEKEPNKWSTVRRRMATTMRTNSVFGINGRPQEQATNNTSYFFSGNSFIGNTLTKITRIYSRLRGVIVDPESDLYYFWMGTVAFAVLYNFWVIILRLTFLEMRSQVRDQGKLWRNYKQKSYFVSDVISIFPLNFIVNFLQDPLLSQMLRIPRLFKWHTISDMFEMSDSRTSKPYGVRALKLTIYLAIIIHWFACFYFMICEYEGLGSTGWTYPELKGNDDRFIRKYIKSLFWAALTLTTIGENESPETTLEYVFTGCTFLIGVLLFATIVGNMGDVISSMNAARAEFQERMDGIKRYMEHHEIPEQLQDRVKRWLQYSWSRLLQQLDKITSLSQLVDKLRTEIAIHVHLETLKKVKIFKDCEQGFLCELVLKLRSQIFSPEDYICRIGEIGREMYIINHGKVEVVVRDSSSGDPIVVASLSDGNYFGEISLLRLDGGTNRRTADVRSVGYSELLCLSKKDLMEALKEYPEAHEILEAQGRDRLQRTKTEKNAMRLRTKNKDTAEEDFNSIDDGVKELKSLVEQLKCFDKLEEKLQTTQLQNQCNALRLQVEEVEIELKKSRKRSYALERMLLSRSNGFYDTTKEYEELNNSRETTERTNEATSRTRDQERNKIYFSLSNEPFSPKELSMNSGTVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUG0</accession>
    <name>A0A7D9HUG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pleckstrin homology domain-containing family G member 5-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021083</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002189">
        <property type="protein sequence ID" value="CAB3993114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUG0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030139">
        <property type="term" value="C:endocytic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043542">
        <property type="term" value="P:endothelial cell migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007266">
        <property type="term" value="P:Rho protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13244">
        <property type="entry name" value="PH_PLEKHG5_G6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.900.10">
        <property type="entry name" value="Dbl homology (DH) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035899">
        <property type="entry name" value="DBL_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000219">
        <property type="entry name" value="DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040181">
        <property type="entry name" value="PKHG5/7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055251">
        <property type="entry name" value="SOS1_NGEF_PH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13217:SF11">
        <property type="entry name" value="PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13217">
        <property type="entry name" value="PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00621">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22697">
        <property type="entry name" value="SOS1_NGEF_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48065">
        <property type="entry name" value="DBL homology domain (DH-domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50010">
        <property type="entry name" value="DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="305"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="370"/>
            <end position="895"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="310"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="376"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="421"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="441"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="461"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="494"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="511"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="521"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="539"/>
            <end position="551"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="555"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="590"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="634"/>
            <end position="650"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="706"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="753"/>
            <end position="771"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="772"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="793"/>
            <end position="834"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="839"/>
            <end position="864"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="871"/>
            <end position="880"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="911" mass="101978" checksum="425E35DEAA6DDD5A" modified="2020-12-02" version="1">MAKSPGRQRQWTVKSQCLAMSAQILFRKADQRDTNRFIYWKPKYSYQRQRKGGLVDRSRERLTLKPVMNMWCESRPECKRLKLSDLLVKLMERLTKYPLLLKAILKKTVDEDKRKEITSMISTVQKFVSKVDGCMKIRHKKENLNKAAIKIESYWPVDPISDEVEKLLIDNYCDFDITRTMPGACEDQHRCLLYNGPLRLNEKQGRMDIHVFLFTDMLLLTKAKKMDKFKIVKPPLRIDKVKVHVLKDPGTFLLVYLNEYRIVVCAYVLHAPNSVVQAKWIEKIDKAKNLYRAVLQSDGSRCLTADDAETQSPGATSSQSPTTKHNRNFWKNSNEFLDVPVMSSSPRLRRHLSGSDGNLAIAGLSESSRGVVRRASCNERKTKSKHDNVYRRPRADSKVTRSTSDPHNKPAREDVLHSGRLSRSSSVKQTNTITEGELQMLTETSVDLESPRSATSISEVDLTESVDMDEIQMSLSPENEVAPDVSPNESVISQEKHSSNGEKESAEKLKLLLAQKLSAKVSKEVGKDEETSPRENTKRSTRSHGERKRVPRSPSVDRAKKLGERRLAMDAGHVDSGASDLKDGRKTKLARSSSGNRQLPDPTQISGKSRSLPKTEGSECVDAAHCNGVEIPGNLSRLSRNDSSSTSPDTVEPSEHSRSSPGAQAPPIKAPLIAGLPLTRNVSNGTDISRKRNQLPKRSSPVLSRKSPDLMRKSMDDQLLEPRTSPPLRRAKSEADTALENLRSKSRHSTHSRNSDIAKNSEHLKNADGKKNTTVHSNEGTISRNSEYSRNPEGNHSKNSENSRHSDKTRPRSRKALADHDTTRRSSAGDDAGSKKLINPSQDANISNSTNSLAQEDTGNSGTNAGDKPRRQMKKYRGHKKLAEADGKVSNVDGNLSKHLEPLMLESSEYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HUN2</accession>
    <name>A0A7D9HUN2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A043672</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001447">
        <property type="protein sequence ID" value="CAB3989221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HUN2"/>
    <dbReference type="OrthoDB" id="547680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051360">
        <property type="entry name" value="Neuronal_Pentraxin_Related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001759">
        <property type="entry name" value="PTX_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277:SF161">
        <property type="entry name" value="LAMININ G DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277">
        <property type="entry name" value="PENTRAXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13385">
        <property type="entry name" value="Laminin_G_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00159">
        <property type="entry name" value="PTX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51828">
        <property type="entry name" value="PTX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EGF-like" evidence="7">
        <location>
            <begin position="19"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="Pentraxin (PTX)" evidence="8">
        <location>
            <begin position="64"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="49"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3989221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="537" mass="59847" checksum="901A1098908C1490" modified="2020-12-02" version="1">MEQVRRMLDSVDKAFSSQAKPDCVKKNLCNGAGRCLADSCEADGFKCKCSDNHYGKYCQYEKFYDYDINFPNTTANNFIDLGTIEMDFKEFTFTAWIKFNPGFTKYPLVSYIAKNTTEMFALAFRSDDTSGTTIGAFSGNLLGQHVDTNTIPIDDGYWHHVGFAWSGVTGEWILLIDGVLWATRNVSTVGKISSGGVLTIGKIIDNGVVYHLVGNVSLVNLWSTAKTGGEIEEIAKRPGSRDGHLITWFMVKDLISDLRIIRPSTAAFSGNGTNYEINLPLANVNYPGPYKTTRFLSSCLWFYGSNVDGNTTFFVYDTVNIFGISSVDMVSTINGFSSKRNTVKGFRQWHFLCIQWNGIAGTVTYFYDGYAVDGKIQNETLKTQLPPGKNFSIGLGEDGIGKLTQLNIWDYEIAASSVIAMSSGGFNVHGSVMSWRSLAKYVPSESIMNYWNSSIYLPGFTVLAKRTKWCNDKYPSTNDTLCPGRLLARLGGHIAREKLEWRCFCPEALYDAKYTYNFSTLSPSYYSKYSAQIGAMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HVU4</accession>
    <name>A0A7D9HVU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Protocadherin Fat 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A086060</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002584">
        <property type="protein sequence ID" value="CAB3995019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5963868at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11304">
        <property type="entry name" value="Cadherin_repeat"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.60">
        <property type="entry name" value="Cadherins"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002126">
        <property type="entry name" value="Cadherin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015919">
        <property type="entry name" value="Cadherin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050174">
        <property type="entry name" value="Protocadherin/Cadherin-CA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044004">
        <property type="entry name" value="TSP1_spondin_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24028">
        <property type="entry name" value="CADHERIN-87A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24028:SF316">
        <property type="entry name" value="NEURAL-CADHERIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00028">
        <property type="entry name" value="Cadherin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19028">
        <property type="entry name" value="TSP1_spondin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00205">
        <property type="entry name" value="CADHERIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00112">
        <property type="entry name" value="CA"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49313">
        <property type="entry name" value="Cadherin-like"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50268">
        <property type="entry name" value="CADHERIN_2"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0106">Calcium</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 10" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="1510"/>
            <end position="1533"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1474"/>
            <end position="1503"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="1475"/>
            <end position="1491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3995019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1664" mass="185781" checksum="051FF2D15C750DC1" modified="2020-12-02" version="1">MKFVFSTGWTSWSACSKKCEIGSRTRYRRITTYPAHGGSSCPTLVRVDGCGQVNGGCGDRCIENDGRCVCTSNPGYELQGDRKSCADKNECSDGSAACINSNCRNTDGSYVCDCFSGYQLSSNPRQCVPKSCTPLTAPQCPADAYRDEFGTTCMPATINCHDGYQYQRSCTLKCADSYKLAVIAQPNFRQKFAENFTTVDFDSPSDRTVCSLDSNSRTVSWDWNPGTTPYYCRRLNDPPLGVTISKTVINEKESVLTPVGKLSATDPQKDHLIFGISNSEGNLHFLIQGNMLLVKTPLVWTPNLGDNTYSVVVNVSDNGSPVMHSAATLHITVLNINDPPYGLELSNNDIFENVPVNSIVGNLTAIDDDVDPRRTSNFSWEIVDSDNGFFSLSGNEILVAKSLDHESKNIHKIQVRCTDYGNPRKTSQVVSMFISVRDSNESPKHINLTNHRVSENSPVGRLVGKIIATDEDNDTLSFDLQGTDSKVLDKFELEGSGTCALRLENGRPTQSCSVPLVVKGSLDYEMENEYIIWVGVTDPGRVTRKQFRIEVENVNERPTDILISDDRVPENSPGGTVVGEFLVQDPDNKNGLTQIHTCSLVNSLNGDEDAFYIAQINQRNLLRIKANKILDFETKKVYNITVFCKDTNLGISKLLLIKVTDVNERPTSLVISSTSVNESESSMIYIGTLSAKDPEGINQTFIYTVRDSQSFRIGGTNKDQLFFLGPLDFEHTPSISVHARVTDNGGLYLEKIFTITVQDVNDPPTDIRLQRADAKLPEDSGENVFISQVEMIDQDSSTRASCRLLNSSNDRVKLISMILVVGPTITDYERLDSSKSLQILVRCEDQYGASITRWINLPVEDVNEPPTRLTLSKFEIRENKNDTLVGILEITDPDVGQRHRCTILDDDTPFYINSSTNPPTLKTVRPLDFESSRVEYVDINCKDIVLDQAEHFIEEQFKINVIDVNEAPQILCNTPFFASPSFSRGAVLGQIQSYDPDNERYHMSKKQNPNGPFEIRKQRLNIRFENENIPWPFYFTQNEIIHLKKQPTAEEYNSSITFRIRVDDDGTVLERKNGAEEYRIKKDETKYSVHNCSVLIGSNETEIDFQLSSNTVPENSTYGTIIIGYLSRTPLLDDEQISYHILEVTNITQPFEIDRNILKVKLDNTLDYERLPADKSLPITISSVASISGVFTKQFLIEVLDVNEMPTAICLTSPRPRENCSVVGHFLIEDLDYPELQCGISETNDLKNYSSQLSEYTCHIQEGVDTLSNKVFVNEYFYIQDSPPTLYVNKTVFTRGDTSYDIPIVCRSTLYPLHILPTTLNVNITVPDNPNCRHGELCASCPEPKYCLSHVAAASKCVGEDYRINSTVAIPVSTFEKHDFVSMFEDYVTSLIEGTSEGKTLAQLVQDFNNQNDASRRRREVEYSDVYVEQLVHVGQGTSTNVVFAVAEKPSYDLIPASAACKLLKNTEVKCLADDTNTSPGNGDDPNTSPGNGDDPNIAPARDDPGERGFPLWIVYTIAGLLLVAFIVTVVVIRRKRRKAKKKRDNNSAPVRFNHHDNTVALDSNSMYEIPFQDRDQSYYSHSGPSNPFVLEKQKVCLDPAFANPGYCADGDWKRGGPSTSRQSTMNHYEANPFPVYESIDGDLHARVHDAGAQFGRNGYETTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2N0</accession>
    <name>A0A7D9I2N0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006483</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002982">
        <property type="protein sequence ID" value="CAB3996942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2N0"/>
    <dbReference type="OrthoDB" id="447173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030286">
        <property type="term" value="C:dynein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045505">
        <property type="term" value="F:dynein intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051959">
        <property type="term" value="F:dynein light intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.920.30:FF:000002">
        <property type="entry name" value="Dynein axonemal heavy chain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.472.130:FF:000005">
        <property type="entry name" value="Dynein axonemal heavy chain 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.920.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026983">
        <property type="entry name" value="DHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041589">
        <property type="entry name" value="DNAH3_AAA_lid_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041466">
        <property type="entry name" value="Dynein_AAA5_ext"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22878">
        <property type="entry name" value="DYNEIN HEAVY CHAIN 6, AXONEMAL-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22878:SF71">
        <property type="entry name" value="DYNEIN, AXONEMAL, HEAVY CHAIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12775">
        <property type="entry name" value="AAA_7"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17857">
        <property type="entry name" value="AAA_lid_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17852">
        <property type="entry name" value="Dynein_AAA_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="627"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="627" mass="72269" checksum="10102A3CCCBAA10A" modified="2020-12-02" version="1" fragment="single">MGQLYGHFDPVSHEWTDGVLANIFREHASLSTPERKWIIFDGPVDAVWIENMNTVLDDNKKLCLMSGEIIQMSERQNMIFEPKDLDQASPATVSRCGMIYMEATQLGWMTLIKSWMIYSFPSNLCSPMKMMIQDMFFWLLPPVLDFVHRHCIQFVRTSSMHLVKQMLVMYDSLLDELREQVSSEVRETEENGVPNESERPSRSDNEIIQWLQSLFFFSLCWSVGGHLDGASREKFSDFLKNLSAGKDKANPRPKDLKLPRTNTFPGKGNIYDYYFDKSTFGTWHPWEKNVLKIEIPSNAKANELIVPTTDTVRQQYFLDLFLSHENLLLFVGPTGTGKSAITIDYILRMDEKKDYIIVSENLSIISIRVDKKLCVSSNDSLDTGACKLYDVTVYIANFVNFSAQTSANQTQDLILSKLDRRRKGVYGAPVGKKVITFVDDLNMPAKEKYGAQPPIEVLRHLVDHKYFFDRKDTSTMNIVDLFLVAAMGPPGGGRNDISSRFLRHFNVIAVESFTNDTMRNIFSVIMDWHFNKDFETQLRRYSRIIIHATLFVYEQAISTFLPTPAKSHYVFNLRDFSRVVQGILLFPGSCATDGNKITRLWVHEVYRVFNDRLVDLEDRSKFFEIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I584</accession>
    <name>A0A7D9I584_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050858</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003422">
        <property type="protein sequence ID" value="CAB3998728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I584"/>
    <dbReference type="OrthoDB" id="5987462at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="747"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="747" mass="83949" checksum="ADB08AC97705E847" modified="2020-12-02" version="1" fragment="single">DSMGGNFSKVLDNVEMRRCPIKQDPDSPYSALPLDISEDELSEELSTADESQQYYQDNDNLPVFRKGLTYGLSTKEIISSLKTLDVNDKCVSKVVPTCVSHNVAFVVDVSSKFVGHVKNLLSDDMGAWNQTGTKTVNYKYNSGDFKVVTNFRQGEENVYKVVKWYYRNNSSKDLSRIVCHMSELKTKTLHSLVYVQYKFDGDEHEVHVDPHGNSKKTSAPYYRTMETTKERLKTITHNSKPSATIFIDLEEAGGLSNVKSSGEIARNVRQAKHYRASGSSTSTASHGSTSDPLLEAIDSCKSGIKDKNKFVREVIAAPEFCILLASDQQLKDVERFCCNPESFSVLGVDPTFNFGDYNLTVSTYRHLLLKTDKGINPVRIGPVLIHQRKTLASYVNLPFSMIKHNPRLSGVLVTGSDGEKPLKDALNIGFSSAVHLLCDIHMEDNVRAKLSNLNMPKDVINQYMTDIFGRRLENQQLKGLVDCSSANELMESYRNLKELWVTRHTCGKEFASYFEKNKLDLIKETMTQDIRSMAGLGFPPDVYNQNANECINSVLKRDTPKDKKRMTIGEFINHCRYLQMRQRSQEELAMIGRGELKVSEEYSDLCCEDVKFFRKSEDQKRAAHSKFFNADVRPTSLSGLLDAESRNEDRTLLSVLPENSTILSVPYPIVKEIFRSGARLLSANNSIVSTPGSSDASSTLPIRQTRANRSVLNVCLQETRLAVAYVNVTNTVFDILVFTCCCSRGTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6N8</accession>
    <name>A0A7D9I6N8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phospholipid-transporting ATPase</fullName>
            <ecNumber evidence="7">7.6.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A061134</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + H2O + phospholipidSide 1 = ADP + phosphate + phospholipidSide 2.</text>
            <dbReference type="EC" id="7.6.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.6.2.1" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020003205">
        <property type="protein sequence ID" value="CAB3997846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6N8"/>
    <dbReference type="OrthoDB" id="377733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140326">
        <property type="term" value="F:ATPase-coupled intramembrane lipid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045332">
        <property type="term" value="P:phospholipid translocation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.150.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059000">
        <property type="entry name" value="ATPase_P-type_domA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006539">
        <property type="entry name" value="P-type_ATPase_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032631">
        <property type="entry name" value="P-type_ATPase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01652">
        <property type="entry name" value="ATPase-Plipid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24092:SF175">
        <property type="entry name" value="PHOSPHOLIPID-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24092">
        <property type="entry name" value="PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00122">
        <property type="entry name" value="E1-E2_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16209">
        <property type="entry name" value="PhoLip_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="Calcium ATPase, transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="295"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="338"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="P-type ATPase N-terminal" evidence="9">
        <location>
            <begin position="39"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="P-type ATPase A" evidence="8">
        <location>
            <begin position="136"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="active site" description="4-aspartylphosphate intermediate" evidence="4">
        <location>
            <position position="403"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="403"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="403"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="404"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="405"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="405"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR606539-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR606539-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR606539-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3997846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="481" mass="55140" checksum="3A9ADB91765C0CB8" modified="2020-12-02" version="1" fragment="single">MAFDSIKDWLGCWSGNYEGEFRTVYFLRKLPENNVEIARQYHRFPDNAVVSSKYTSWNFVPKNLFEQFRRIANFYFLCISVVQLFIDSPVSPLTSIFPLCFVVAVTALKQGYEDWKRHQADKEVNNRKYELVSPFNGHLVSVTSKDIKVGDIVKVKAEEEFPCDLVLLSSEDPEGKCHVTTANLDGETNLKLHSSLPDTAELQTAETLNYLPAHIECEHPMPDLYKFQGRMILDNNGTETTKSLGPSQVLLRGARLKNTSYVFGVAVYTGMDTKMALNQRQNPHKYSTVERTMNTFLIIFLVVLLVLCTLHTVLKRIRGGPPYVEEADTGTVQGLEDFLSFIILYNYVIPISLYVTIELQKFTGALFFNWDIEMYNEETDEPAKANTSDLNEELGQIQYVFTDKTGTLTENDMQFRTCSINGEKYEEIDNLLCADGMRSHNFQSSNFTPEMHEFFLTLSLCHTVHATEEEDENAPYPYHYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IA33</accession>
    <name>A0A7D9IA33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029678</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003801">
        <property type="protein sequence ID" value="CAB4000300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IA33"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="9462" checksum="17DB274B7B977569" modified="2020-12-02" version="1">MSAKTLCFLLVILVISYDIEAFAAGAGNIGITGRKRGLVTKDFRIFKNICTWASEYCPSNSDNRYATRVAKNEGTPNILETGEEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBE6</accession>
    <name>A0A7D9IBE6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A010995</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004255">
        <property type="protein sequence ID" value="CAB4002097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBE6"/>
    <dbReference type="OrthoDB" id="6774702at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="21"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="154"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4002097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="31150" checksum="723D1C23C05EFEA7" modified="2020-12-02" version="1">MTEIAMVAESSKQPPNSITEVLDKFHDSISRVFDKSLTHPNVIIGGDFNLGDIDWASDEPAPRISNSASQHNKFLHLIEDFSLSQHIKSTTRPASDKILDLLLSTYPNSVLNPTTVSGISDHLAVVFEKSFDHNAIPTDWSQALVTAVLQNSSKSNPANYRPISLTCIWCKIMEHIVLSHMAKHLSANNILIAEQHGFRKNRSCETQLISTIHDWGKSINLRNQTDVILLDFKKAFDSVPHEHLLTKLDYYGIKGNTRTWIKAFITKLIPPLAYLNAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQH4</accession>
    <name>A0A7D9IQH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heterogeneous nuclear ribonucleo A0-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A004088</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006920">
        <property type="protein sequence ID" value="CAB4010829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQH4"/>
    <dbReference type="OrthoDB" id="1875751at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48033">
        <property type="entry name" value="RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48033:SF10">
        <property type="entry name" value="RNA-BINDING PROTEIN SQUID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="195"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="277"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="3">
        <location>
            <begin position="200"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4010829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="31732" checksum="E0C8E6B8C0BF8698" modified="2020-12-02" version="1">MGEKLEDRELNALCKLFIGGLPRVITDEDLEIYFLKFTPDESLNDCIVIKNKEDKQSRGFGFVTYNRLADADNCLASGPHNIGGKDVEVKHAIPRDEKLPANHIRTNKIFVGGLTKETTEEDISEAVQNHVLACGKSLNAEVTKVEIIKTKKEDGVDPPVSRGFAFLDMATNADADKVVIVKHFKINGKQVELKKAAPKGGAGSGRGGGRGGGGRGSGQFGGVSGGWGAGAYNGGLYNAVGFGFSGGYGYGDGAGYGGYRGGYSGGYGDSSGMFGQYSQQSSGFGPSHGGRTRGRGRGNAPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRY2</accession>
    <name>A0A7D9IRY2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Fanconi-associated nuclease</fullName>
            <ecNumber evidence="1">3.1.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A003483</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Nuclease required for the repair of DNA interstrand cross-links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolytically removes 5'-nucleotides successively from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides.</text>
            <dbReference type="EC" id="3.1.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAN1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.1" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020009479">
        <property type="protein sequence ID" value="CAB4017291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRY2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008409">
        <property type="term" value="F:5'-3' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017108">
        <property type="term" value="F:5'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070336">
        <property type="term" value="F:flap-structured DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004528">
        <property type="term" value="F:phosphodiesterase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036297">
        <property type="term" value="P:interstrand cross-link repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033315">
        <property type="entry name" value="Fan1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049125">
        <property type="entry name" value="FAN1-like_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049138">
        <property type="entry name" value="Fan1_SAP_met"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15749">
        <property type="entry name" value="FANCONI-ASSOCIATED NUCLEASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15749:SF4">
        <property type="entry name" value="FANCONI-ASSOCIATED NUCLEASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21315">
        <property type="entry name" value="FAN1_HTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21169">
        <property type="entry name" value="Fan1_SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81995">
        <property type="entry name" value="beta-sandwich domain of Sec23/24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0464">Manganese</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fanconi-associated nuclease 1-like winged-helix" evidence="4">
        <location>
            <begin position="229"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="Fanconi-associated nuclease 1 SAP subdomain metazoa" evidence="3">
        <location>
            <begin position="322"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="44"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="57"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU365033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF21315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4017291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="421" mass="48236" checksum="4247F8D08B70221E" modified="2020-12-02" version="1">MICDCSSSDANDGTGIQFPWRGSSNLSKWRSTRSEVCEDFKKTAMESKRKRLSMNKSENKQVKKLKEEDKGVESFTAPRKGEKVNNAKKRPLSGPIVSCFLKQQQQQQQQQQQQQQQQQQQTKSVTCPMCNSLVLYKNINQHLDDACQERNERSLSSLQGCAFEMKDADLVSTPREKKFIAGPESNAPAVTFQDDLDAIIVLESDELPNVEKDERLHNDEVISSINKSYLHNFMLIMTTVFSQKDDKELFNDSDNTVVNSFQELGDESKMLYVRLFQRKYKWFRTSNIKYPKISENLQPCFDELIKTGFLLTETELDDLTAIFNLLPAEDVQELAKSMHIHTKAQTKKNLVNALMKQSKTQCSLFSTNGDRIEKAIMKRAKSLLGACVKLESEVRNVFSRVILLFTLNLMRDDDDNYGAQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ISQ0</accession>
    <name>A0A7D9ISQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribonuclease H2 subunit B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A001461</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">The RNase H2 complex is a heterotrimer composed of the catalytic subunit RNASEH2A and the non-catalytic subunits RNASEH2B and RNASEH2C.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNase H2 subunit B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009052">
        <property type="protein sequence ID" value="CAB4016275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ISQ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032299">
        <property type="term" value="C:ribonuclease H2 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.20.120:FF:000002">
        <property type="entry name" value="Ribonuclease H2 subunit B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040456">
        <property type="entry name" value="RNase_H2_suB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019024">
        <property type="entry name" value="RNase_H2_suB_wHTH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13383">
        <property type="entry name" value="RIBONUCLEASE H2 SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13383:SF11">
        <property type="entry name" value="RIBONUCLEASE H2 SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09468">
        <property type="entry name" value="RNase_H2-Ydr279"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ribonuclease H2 subunit B wHTH" evidence="3">
        <location>
            <begin position="2"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4016275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="23569" checksum="D77579FA4F9FF5A6" modified="2020-12-02" version="1">MVLPFLKNTSTKFMTLDHILQDSNNEHLAKLSHCITNEDLALVTEVKGEDDLVALKLNHDKVISWLEKKVHQTKDQLEQDNICTSGAQSSTFVRSSKSRGNTQDDYLRYAYGLVSDYISDYWSQKLKDCLGITDEILESSGEEPACKKVKLDESLVGQPDEDYSKFATKTKKTDQHNVKLTAAQKSLAKVNTKGMKSISSFFGAPKKSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IW02</accession>
    <name>A0A7D9IW02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH oxidase 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009968">
        <property type="protein sequence ID" value="CAB4018360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IW02"/>
    <dbReference type="OrthoDB" id="167398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043020">
        <property type="term" value="C:NADPH oxidase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016175">
        <property type="term" value="F:superoxide-generating NAD(P)H oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042554">
        <property type="term" value="P:superoxide anion generation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="entry name" value="Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013121">
        <property type="entry name" value="Fe_red_NAD-bd_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050369">
        <property type="entry name" value="RBOH/FRE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11972">
        <property type="entry name" value="NADPH OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11972:SF58">
        <property type="entry name" value="NADPH OXIDASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08030">
        <property type="entry name" value="NAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="10966" checksum="5A11C03880FC150B" modified="2020-12-02" version="1">MHIYMTSALRKEDMKAVGLQLALELIHNKKEKDLITGLKTRTNPGRPDWDKVFRDLQQQKNGKISVFYCGNPALGKTLKAYCQEFGFRFRQENF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JCF4</accession>
    <name>A0A7D9JCF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Adhesion G- coupled receptor D1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A046382</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014434">
        <property type="protein sequence ID" value="CAB4026831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JCF4"/>
    <dbReference type="OrthoDB" id="1100386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011">
        <property type="entry name" value="ADHESION G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011:SF347">
        <property type="entry name" value="FI21270P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00249">
        <property type="entry name" value="GPCRSECRETIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="31"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="118"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="150"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="163"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="194"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4026831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22429" checksum="AE30282B094C9C91" modified="2020-12-02" version="1" fragment="single">IPVFVVPVLVGVNDPEDFITKGACWCGGDGVLFWVFVGTLGLIILVNVVIFILALRNALSTWASTSTRTQGSETTTKATVCTKLRKAKIGLKGSAVLLPILGLTWVFGLLVFNRDATVFKYLFAIFNSLQGLMIFLFHVLINKKIHEEISRERKARNAGPPTKTKSMPDTAYVSLTNEKTTGKSRIPVPEDIELSQHSDHQKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDK9</accession>
    <name>A0A7D9JDK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Matrix metallo ase-24-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014794">
        <property type="protein sequence ID" value="CAB4027427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JDK9"/>
    <dbReference type="OrthoDB" id="406838at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="PGBD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="69" mass="7672" checksum="390387EC8F2B3C1A" modified="2020-12-02" version="1" fragment="single">MANYYGTPPNKRKNAVREFQAYAKLPVTGAMDEATVAMLTGPRCGASDTAKTQSRLKRYVKQGSTWKKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JI63</accession>
    <name>A0A7D9JI63_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Coatomer subunit alpha-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089623</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016635">
        <property type="protein sequence ID" value="CAB4030119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JI63"/>
    <dbReference type="OrthoDB" id="10261470at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030117">
        <property type="term" value="C:membrane coat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006692">
        <property type="entry name" value="Beta-prop_COPA/B_2nd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04053">
        <property type="entry name" value="B-prop_COPA_B_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="COPA/B second beta-propeller" evidence="1">
        <location>
            <begin position="3"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16063" checksum="9948B8915CC2C5AA" modified="2020-12-02" version="1" fragment="single">LLIKNLKNEVTKKIPTQTCDNIFYAGTGSLLLRDPEAVTLFDVQQKRTMGVAKVSKVKYVVWSSDMSHVALLSKHIVSICNRKLESLSTIHENIRVKSGAWDENGVFIYTTCNHIKYALLNGDHGIIRTLDLPIYITKIKVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JI96</accession>
    <name>A0A7D9JI96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018189</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016476">
        <property type="protein sequence ID" value="CAB4029887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JI96"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="10844" checksum="4A0C909133684607" modified="2020-12-02" version="1" fragment="single">MGDEEGRVNTRSHSRKDLDTYFKSDAFGDLVNKAITQQFQSFLSSKGFQDMLVLTTKTIVSEVVCGTVESVVDKEIDKVVQPLKNKIAELEFQLDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JNM6</accession>
    <name>A0A7D9JNM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062544</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018574">
        <property type="protein sequence ID" value="CAB4032648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JNM6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="43075" checksum="33DACA98267057B7" modified="2020-12-02" version="1" fragment="single">LCQSPPDDIDELVACYNATLKSVLDKHAPLKNKVIIERTRVPWFNEEIKEAKRKRRKVERKWRDTRLAADLADFKQKRNVVTRLMNKARREFHSEFIDAHSGNQKKLFTGTMKLINQSKTRDLPPVPDNAVCASSIGKFFNRKIANIRNAVTTIGVSPFSDFNVLTEQEVSALIMSSSRKTSPTDPMPSKLVSECSCLLPVITKMINTSLQSGHFPDDWKEVLLSPLLKKVGADFTFQSKEIKLAKGIKYNSKQFYAYLRSKKKSNPTVSKLKKPNGEFTTSVKESADLLVKSFATVFTNETSLTRDCNMDIIAVKQIDPLVISDYDVKNELLALDVSKCAGPDGVHPKIVRFLAGNDNFVSAVTALYRSISDNSQKLGRKQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K5X8</accession>
    <name>A0A7D9K5X8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A089069</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029057">
        <property type="protein sequence ID" value="CAB4041867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K5X8"/>
    <dbReference type="OrthoDB" id="5976912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048525">
        <property type="entry name" value="DDR1-2_DS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543:SF325">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21114">
        <property type="entry name" value="DDR1-2_DS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="284"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="284"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="11">
        <location>
            <begin position="296"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4041867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="305" mass="34375" checksum="EA7CAEBCC125DF62" modified="2020-12-02" version="1" fragment="single">MADGRIKDSQITVTSVLITAYGRLARLRQNIPNWGAWCPVVSGGSRSYRNYDQHILIDLLNLTKITGIATQGRQYNGGREKVKDYKLSYRKDGGAWHFYPGKDQTAKIFLGNTDVSTVVQHDLDPTIMASNGTGILTDIKFGPANSKEFRGTGWVGWSSFFTQAQYIDIIFEFSGMRKFTNVTLTVNVAKKRYSAVFNQSWIFFSSTEDSFSNTSFLQYCPRDFPAQDNFYNANVSLSLCENTARFLKLRLYFGGEWLLITEISFNSGCNSTYTTRLQIYTTASPDNPTTTIPQINPKPKPGYDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KBG3</accession>
    <name>A0A7D9KBG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014168</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033607">
        <property type="protein sequence ID" value="CAB4043942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KBG3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11614" checksum="89AD0DC93928E75E" modified="2020-12-02" version="1" fragment="single">MDQSHDDENKISAGENSTNSKKVENLDSPQFQEMVRGFVVEKELLEKRHKDEIEKLKENFSKKENILSESHGGGQVHGESSQFGHSSSTMVGQSMQSQMMANGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KCH0</accession>
    <name>A0A7D9KCH0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004112</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032585">
        <property type="protein sequence ID" value="CAB4043536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KCH0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11583" checksum="3783295CEA2B57B6" modified="2020-12-02" version="1" fragment="single">RPAEEVKQSLTKLQEAYEKWITEHEELTKLIEDDAEFETEEAWLAECQEAFMNFEIEGKKHLDEAAKQVSEENITNSQPSASASDAHNEIIAIKMKTTMLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L0J3</accession>
    <name>A0A7D9L0J3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">BTB and MATH domain-containing 36-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011179">
        <property type="protein sequence ID" value="CAB4020901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L0J3"/>
    <dbReference type="OrthoDB" id="5972746at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22744:SF17">
        <property type="entry name" value="BTB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22744">
        <property type="entry name" value="HELIX LOOP HELIX PROTEIN 21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="30428" checksum="CCFFFFC203751F74" modified="2020-12-02" version="1" fragment="single">MAMCEFAKPWYRSDVILRAEDRKFHVHKNTLGLWSPVFDSLIKARKTANEIIELPKKKAKEIYELLLVIYNLQTVNSQNIISFLKLAKEFEIEKVLYLCSSFLLEIEKPDLKCINFLLLAERYGLEDVKQQCFEIAASFSLSHLKTSEKFEELSMESKFHITEIMLMQEQAFVEDLKKKSFKLLQTVYLTGHEKFVTDMQPTVRRPFVYSCRKRPAHSALKENGRVLPRVYDLECSVCRATTENWARRKEQHYPMNKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L9D2</accession>
    <name>A0A7D9L9D2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046183</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014170">
        <property type="protein sequence ID" value="CAB4026401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L9D2"/>
    <dbReference type="OrthoDB" id="6159421at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16859" checksum="305D2AB7843A72C7" modified="2020-12-02" version="1" fragment="single">MEWRQHALEPKAKPELHWDEYWLNIRDTTTPTGEAKYPLLMAFVSILASLPFSNVSVERIFSQLKLVKTDQRDSLKSTSLVSLLQAKMRMKNEHLTAASLRVHKGMLELAAKMKSYATDKETKELRKELLLISTNNEYLFEDGMTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LCJ3</accession>
    <name>A0A7D9LCJ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BTB POZ domain-containing POB1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011597</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016585">
        <property type="protein sequence ID" value="CAB4030041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LCJ3"/>
    <dbReference type="OrthoDB" id="5982674at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045890">
        <property type="entry name" value="POB1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46336:SF3">
        <property type="entry name" value="BTB_POZ DOMAIN-CONTAINING PROTEIN POB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46336">
        <property type="entry name" value="OS02G0260700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="567" mass="64147" checksum="9403E4BD9A509694" modified="2020-12-02" version="1">MSDMELKYCDLIDFSKMCVPEYNMPEFSDRVLVFDVMRDEWETASLVQSSANTAEPGVSHSGDSIETSGDLIETSGSKRSLEIADEGPEQKRRKKIEPNNETRVELLVADSGSETEPTCEQINADCEIEIGSAMENKSHEPACEQAENKKLDKPSTSPLHPSTEGVPEKAAILDCNGIQENLNESLRQHKIYVHGLWLAVQSPYFRSLLHSSGMKETHDTEVHLKIPESEEKAHLVLLEAMYCSDVLNDKSVDELLDVLELADKYDVKFAFKKCKYVLQQNATTFEISRKIMHVIKVKHNMNDSEDLAVTLQLVLAQEFSPLDENWQSEKFTSLPEPSVKYLLRSDDLIVQSENTVFHALMHWMEQNDVDPAGLEETNDLLAAVRFKLVTIDYLYNVIKNHPIALKMPKFSELYLGGMTHHAIPVEQKSLLEEPPVLRKEHKGNIIQHTFVVKKEDYAETSSGGAVELISDEFWACGYKMSVHLSICCSSYSFHYSDLSMSVHNLNKESLVPLKFAFLKNGTTMSLQEKTFNQKQLSCAERCRNLKLQSSDFSNDDTCKLCIVVEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LIE7</accession>
    <name>A0A7D9LIE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A012578</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017335">
        <property type="protein sequence ID" value="CAB4031068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LIE7"/>
    <dbReference type="OrthoDB" id="6134459at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="708"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="744"/>
            <end position="765"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="785"/>
            <end position="801"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="822"/>
            <end position="843"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="994"/>
            <end position="1016"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1037"/>
            <end position="1057"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1069"/>
            <end position="1088"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4031068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1117" mass="131241" checksum="79C959E6F6241447" modified="2020-12-02" version="1">MGGGFSFRLLYRVVFFSFCLIFACFYHGGGSEYDRREDKTEPNKLKDEFKGKSLNVAVSLEQDERVPNLTENGKQTDGRKARKKTDLSKMVRKGTAMKTFQSERIQKSPVLPFSTSLPSEVNVPRKESTTIAHSNETEWQRDGGKNISSSENQIFHQNDSRETAKRETFASLATQHLRNRREIDAILERPIECTNFTFTIKYEDNYRVWNNFSMMRQSRMYRYNEYRVTDDGLQNKVYDYTEYRVLNDGIKICNSTDNYVQNIWKVRNKWVKERIHKKSCNKPIRESWLYREYYSVNKQFTVYSAARSQYFTKNEYGVEDGKPSTCDEKFRPESTEYTQEDLLMCNDSIINITYDDEYKVRTDFSIIYKNKVYDYTEYRVLNDGIKICNSTDNNVRNIWKLRNDWVKGTIDEKSCNKPVAYNDFDRWEYTVLKNFKVRILATKKLIANNDYGVDKGKRITCVPEWADFTFTITYEDEYRVWNNFSMMYQCRMYYYDEYRMTDDDLQVCNSSDRRIKEKWRNFIVSEKITIAFKHCNVSVDGFSSQNYTLDTNFTIFFKATNQNFRWETYGVIMGYFAICSGNLRWSCNDDLVKVKYGEPYNVFKNFSLFYNDKKYDYRGYRLSHDILEMFASNDSRVQAIWRTRNSWQKSLPASCNARYYTVTKQFAVYSADNGQYFRRNDYAVIDSEPYVCGKENLRPIYVITNFKIIIAPLCALALSIISLLLLLIVYCMLPELRTLPALNLMSFSFALLLWQTYLVVFLTLYSHVGKLFEIPCAKQFVTNKFMTYSIIMNAAVNIYHLRKTFCGNTLVKSDELKKWNRFLKYSFFSWGVPVIITIVYIVLVKKDVLRFDQPIASVKNDVQSSLRFYRRIANRKTTANNIGIYHRVASLKGDVLQSKSTFNQSIDIVFEDAESKFNQSTVFGKEDATEDDARIYQPIVSLKKDVQSSLKFYERILFANGDGKEDDARIYQQISGNCINGRITPDWSADVDVYGLQGCLLLYIIGMFIFTAYRIRQKLKASRNIAQKSNVVKRRKFVILLKLSTTTALSYWFPLFISRIVDFDFDIKIALYTVTLLTGAYIGIAFVFTRRNYQLLKKIFLPANNKPSVNEIPLNRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LLX5</accession>
    <name>A0A7D9LLX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Neurogenic locus notch homolog 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A066406</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA/RNA non-specific endonuclease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020777">
        <property type="protein sequence ID" value="CAB4035161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LLX5"/>
    <dbReference type="OrthoDB" id="5960141at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000014">
        <property type="term" value="F:single-stranded DNA endodeoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006309">
        <property type="term" value="P:apoptotic DNA fragmentation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.570.10">
        <property type="entry name" value="Extracellular Endonuclease, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044929">
        <property type="entry name" value="DNA/RNA_non-sp_Endonuclease_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001604">
        <property type="entry name" value="Endo_G_ENPP1-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040255">
        <property type="entry name" value="Non-specific_endonuclease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13966">
        <property type="entry name" value="ENDONUCLEASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13966:SF19">
        <property type="entry name" value="NUCLEASE EXOG, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01223">
        <property type="entry name" value="Endonuclease_NS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA/RNA non-specific endonuclease/pyrophosphatase/phosphodiesterase" evidence="4">
        <location>
            <begin position="73"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR640255-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR640255-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4035161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="211" mass="23858" checksum="E5B458DBFEEB3041" modified="2020-12-02" version="1">MQAIYVCLLASLVSSYLLFSVNAQGENAFDNNINRCLFDGWSRGRSAVLNAKMECRGRSYAGLCYGLRRGTALYAVCYNQNTLIPEFSGHVVAPLGRNQAAATGRHGFRNEGGRYAPKTQTDEKEDYEKYSQKPIIPKFDDKRRFFNRGHLTPNEAFDDDNERELTFVNTNVAPQWVAFNSENWGKVESAVKRYANQNNRKVYVVTGTGKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZF0</accession>
    <name>A0A7D9LZF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box LRR-repeat 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A088359</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027096">
        <property type="protein sequence ID" value="CAB4040673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZF0"/>
    <dbReference type="OrthoDB" id="10257471at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019005">
        <property type="term" value="C:SCF ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031146">
        <property type="term" value="P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006553">
        <property type="entry name" value="Leu-rich_rpt_Cys-con_subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13318:SF19">
        <property type="entry name" value="F-BOX_LRR-REPEAT PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13318">
        <property type="entry name" value="PARTNER OF PAIRED, ISOFORM B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13516">
        <property type="entry name" value="LRR_6"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00367">
        <property type="entry name" value="LRR_CC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15056" checksum="2951FE36BCA0C2F4" modified="2020-12-02" version="1" fragment="single">MARYLLRVVGDHVKVLVLGCCPGLTNGLVYKMLSYCKNLEHLDLSQNIISDLGLNGLFRKNGGRNLRRLDLSGCAKITDKTLKKLSVALTPRVTNDRASSGGSGDEHSDCCQDELISVTHGLRYLSLSGCYQITDEGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M1D3</accession>
    <name>A0A7D9M1D3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067262</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028239">
        <property type="protein sequence ID" value="CAB4041391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M1D3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="675" mass="80429" checksum="648D50A089948F58" modified="2020-12-02" version="1">MAFRVTSGTDGDIKKLKLENDAWSCNMGRGFNFRLLYRVVFFSFCLIFACFYHGGGSEYDRRENKVKKLKDEFKDKPLNVDVSLEQDERVSNLIENAKQIDGRKARKKTDLSKIVRKGTPMKTLRSERIQKSPVLPFSTPSPSEVNVPRKESTTISHSNETEWKNDGSKNISLLGKKMFHQNYFRETAKRETFASFTTQHLRSRREIDAILESPTECANFTFTIKYEDIYRVWNNFSMMYQSRMYRYNEYRVTDDDLQVCNSSDPLIKQRWPGLVAREKKVLASKYCNVSVVVFYNSNYTLYRNLSVFFKPTQQSFTRQDYGVTFGYFAICSAKLSLSYNNSLVKDGKPHIWEEKNLRTTSTEYTLEDLLICIHSIINIKYDDEYKVRTDFSILYKNKMYDYTEYRVLNDSIKICNSTDNYVRNIWKVRNKRVKLTMHYKSCNEPIKDFLSHRQYYTVNKQFTVYFVTTSQYFKRNDYGVQYGKPAICQEKFKPTSTEYTQEDLLMCNDSIINITYDDEYKVRTDFSILYKNNVYDYTEYRVLNDSIKICNSTDNYVRNIWKLRNKWVKAKMHQKGCSKPNRESLLNQKYYTVNKQFTVYDAPWSQYFTRNEYGVHDGKLHICKEKFKPTSTEYTREDLLMCNDSIINIKYDDEYKVRTNFSILYKNKVYHYTKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2P9</accession>
    <name>A0A7D9M2P9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032659">
        <property type="protein sequence ID" value="CAB4043570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2P9"/>
    <dbReference type="OrthoDB" id="432234at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21827" checksum="5931F69338E4EA63" modified="2020-12-02" version="1" fragment="single">MIHLVQNGTGFDTNVKTALKGFLAQKFKDENDCSDTTELDQYIEAGKKAADTVCQYVDWLLSTVNPNPPDEDMWIRPEVHPCQRSHDDIPEHEKQSDYVDLLNMVQRHTRCSTSYCLRKKSNETELKCRFHFPFDICPKTKLEFEKVHTSGDNEHYQAKIVTKRNDSRLNNHQQLQLQGWRANCDIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M380</accession>
    <name>A0A7D9M380_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005332</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030617">
        <property type="protein sequence ID" value="CAB4042686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M380"/>
    <dbReference type="OrthoDB" id="5980437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF31">
        <property type="entry name" value="OS01G0873500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="239"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="460" mass="51868" checksum="88A893E8E88854B7" modified="2020-12-02" version="1" fragment="single">MASTGYGPSRESRWSRLTFDGNESNYELWEAKFLAHMRLLKLKDTILPSEEEADATKNEECYAELIQCLDDTSLSLVMRDATDDGRKALQILRDHYANQGKPRIITLYTELTSLEKALHETVTDYLIRAEKAITALKNAKETLSDGLIITMILKGLPDSYKPFSIHVTQSASEITFAKFKSMLRSFEETEKLNTKPKVDQVMKAEFPSQTMTCYGCGKRGHLVRECPAKSEKKWCNYHKSTTHSDSTCRSQQKSKDQAKRVSEKENTSKDEHSFAFKVNDEATGKINRMGMLVDTGATSHIVTTDILKQIDMTFKPSKHYIELADGTRASNIALKRGDAEVFLKDTNGKCVKTVLKNALYIPSYPQDIFSVKAATSNGAELRFAQDTGELTLEDGTIAEIEEHGRLYYLTSIDSHENDSVSEVDKVNLSYDINTWHEILGHCNFEDIIKLQGVVKGMKFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FIG5</accession>
    <name>A0A6S7FIG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011137</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000160">
        <property type="protein sequence ID" value="CAB3979018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FIG5"/>
    <dbReference type="OrthoDB" id="10221010at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="20605" checksum="DE9C6AEB03042333" modified="2020-12-02" version="1">MTDTKKEVINELYDAALLTTGVVGVSYLAKTVAGKSLGAPMTLEGVAKLAVAVAGRLFNAVAFAGAGFLFFKLNGQGYKEEVKRHNQALEKLAKAKEKFYESEVKRRNDETRRRAEILDANKDIEETNRALEDLRDYTRLMDNTASQRRPKLEDYYQPSDEMKRYAVLTVGILGVGGAYGLARIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVY4</accession>
    <name>A0A6S7FVY4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Serine/threonine-protein kinase receptor</fullName>
            <ecNumber evidence="15">2.7.11.30</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A010469</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-threonyl-[receptor-protein] + ATP = O-phospho-L-threonyl-[receptor-protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:44880"/>
            <dbReference type="Rhea" id="RHEA-COMP:11024"/>
            <dbReference type="Rhea" id="RHEA-COMP:11025"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.30"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="15">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 15">Membrane</location>
            <topology evidence="1 15">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.30" evidence="15"/>
    <dbReference type="EMBL" id="CACRXK020000637">
        <property type="protein sequence ID" value="CAB3983635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVY4"/>
    <dbReference type="OrthoDB" id="547665at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048179">
        <property type="term" value="C:activin receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048185">
        <property type="term" value="F:activin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017002">
        <property type="term" value="F:activin receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071363">
        <property type="term" value="P:cellular response to growth factor stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.60.10">
        <property type="entry name" value="CD59"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045860">
        <property type="entry name" value="Snake_toxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000333">
        <property type="entry name" value="TGFB_receptor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23255:SF98">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23255">
        <property type="entry name" value="TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00653">
        <property type="entry name" value="ACTIVIN2R"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57302">
        <property type="entry name" value="Snake toxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15" id="KW-0464">Manganese</keyword>
    <keyword evidence="13 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14 15 16" id="KW-0675">Receptor</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 15" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="4 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 15" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="133"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU361271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3983635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="505" mass="57240" checksum="6639F1B1A16D1A11" modified="2020-12-02" version="1">MKWNLWLTCAGLLLVFHQGIEVGAVQCEIWEKDRQLPNKECPTGCFAIWYNISGVIRIEHKNCWGKNAGGYKDDCEGTMQIRDRNSYHAIFCACHKELCNANLTWTGSSTNVSRYRTVIPPTPERKGNNNDHIIFVVVAIVGTVMVSLVVFMVYIKKRAYFKPEPESVSKGSEVETLIPSEELPPIDLKDVLSQGQFCVVRKGRMGYKDVAVKIFPITQCSKPTPSALTEEDMYMVCKLSHENILKFIGKHMYEEGNQQQLWLVTEYIEQGSLSDFLKRNTISRENLFHMAKGMALGMAYLHAEIPRVKPSIAHRDIKSKNILVKNNLTCCISDFGLSLKFDSKDGPGDTHGQVGTRRYMAPEVLEGAINFSREAFLRIDMYAFALCLWELLTRCTAVQEEPVSDYKLPFEEEVGIHPSLEELQDYVVNKKLRPHFPAEWKNTDQGIDGIIVTIEECWDHDADARLTADCVAERVKQLYGAGKRQTNTPLAVSYKSLEHENGLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYU8</accession>
    <name>A0A6S7FYU8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002517</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000384">
        <property type="protein sequence ID" value="CAB3981402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYU8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="271"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="376"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="273"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="376"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="409"/>
            <end position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="47313" checksum="BC01B8B2D492A526" modified="2020-12-02" version="1">MDDEKKITYDNEEEEIDPTENNYEEEEQVDPTENDENNDDDENTVKNNNDDENESEYDSEKDYSGDENYSADDEEEVNNEASALFLKQIWDAHCMTIQKQKQSKFIPATKRFLAATFAKKEKMLNDNKQLVSHLVFLCRNIANGKIPLNISECEKALFTHIADRTTNRADMRLRLLEEFAKYLGVTKTTMGEDVKRLMLIDTEKYNAMIKNIDRLVANKGILDEAKQTAVEGELIEGYANMMASVAKKQPNATDDINYSKKRKNYRKELQETAAAAGQPAAGGPAPKPGSLASSEKLIRSFLKQRGVVETDKGTKFGNKTLNFSLDDMVADLTKNVTKKKTNLNEIQHQKLLKELKKLSMPVYYIRSENLKGQYRSLSESAASTSHASPPAAYETPPPQDIGQITPFRQKGKSRAYMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0A8</accession>
    <name>A0A6S7G0A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018337</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the alpha-carbonic anhydrase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000466">
        <property type="protein sequence ID" value="CAB3982099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0A8"/>
    <dbReference type="OrthoDB" id="5986706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00326">
        <property type="entry name" value="alpha_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.200.10">
        <property type="entry name" value="Alpha carbonic anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001148">
        <property type="entry name" value="CA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036398">
        <property type="entry name" value="CA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023561">
        <property type="entry name" value="Carbonic_anhydrase_a-class"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18952">
        <property type="entry name" value="CARBONIC ANHYDRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18952:SF124">
        <property type="entry name" value="CARBONIC ANHYDRASE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00194">
        <property type="entry name" value="Carb_anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01057">
        <property type="entry name" value="Carb_anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51069">
        <property type="entry name" value="Carbonic anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51144">
        <property type="entry name" value="ALPHA_CA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="35123" checksum="2BFED4F12E3251C6" modified="2020-12-02" version="1">MHVYIGVLSCLVCICVAHPHNHTWDHYDQGKTWLTKFEKFCAGKKQSPINIKNPQCDKALNDSITFINYDNAGPTKFPFENNGHWLIVRAASTTAKINLGGPITYRFHQLHFHWGKDDTRGSEHQLDGEVFPAAMHLYHINEKYTSFHDAQDKKDGFAMLSFFVKIGDKNPAFDFLNFTTHSKLIDPETKVNITQFALNKLLPKNLTVIYRYEGSITNPTCDESILWTIFDQPVYISKSQLAELRRLKDRNNKTLVDNYRAVQDLNGRKITYWSEAKCGSRDSAATALGASIFSALFSLLLFTFINAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4L7</accession>
    <name>A0A6S7G4L7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033236</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001266">
        <property type="protein sequence ID" value="CAB3988014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4L7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10068">
        <property type="entry name" value="BONE MARROW PROTEOGLYCAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10068:SF14">
        <property type="entry name" value="CELL WALL ADHESIN EAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="478"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="532"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="698"/>
            <end position="745"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="22"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="61"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="109"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="148"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="196"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="235"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="268"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="283"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="322"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="355"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="370"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="709"/>
            <end position="718"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="756" mass="86593" checksum="77F20E746E7EE1BC" modified="2020-12-02" version="1">MDPMDLMDPRDPKEPMDPMDPMDPMDVMDPMDPMDPMDPMDPMDPMEPMEPMDPMDPMDPMDPMDLMDPTDPMDPTDPMDPMDPMDPTDPMDLMDPRDPKEPMDPMDPMDPMDVMDPMDPMDPMDPMDPMDPMEPMEPMDPMDPMDPMDPMDLMDPTDPMDPTDPMDPMDPMDPTDPMDLMDPRDPKEPMDPMDPMDPMDVMDPMDPMDPMDPMDPMDPMEPMEPMDPMDPMDPMDPMDLMDPTDPMDPTDPMDPMDPMDPTDPMDLMDPRDPKEPMDPMDPMDPMDVMDPMDPMDPMDPMDPMDPMEPMEPMDPMDPMDPMDPMDLMDPTDPMDPTDPMDPMDPMDPTDPMDLMDPRDPKEPMDPMDPMDPMDVMDPMDPMDPMDPMDPMDPMEPMEPMDPMDLMDPMDPMDPMDPMDLMDPTDPMDPTDPMDPMDPMDLMDPMDVMDPMDPMDPRDPMEPMDPMDPMDVMDPMDPMDPMDPMDPMDPTDPRDPMEPMDPTDPMDVMDPMDPMDVMDPMDPMDLMDPSHPWDPMDPMDPMDPMDPTDPMDPMDPRDPMEPMDPMDPMDPMDVMDPMDPMDPMDPMDPMEPMDPMDPIDLMDPTDPMDPMDLMDPTDPMDPMDLMDPTDPMDPTDPMDPMDPMDPMDLMDPMDTMDPMDVMDPMDPMDPMDPTDPMDPRDPMEPMDPMDPMDVMDPMEPMDPMDPTDPMDPMDVMDPMDPMDPMDPMDPMDPMDPMDPMDPTDPIGSIGSIFFLYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5I0</accession>
    <name>A0A6S7G5I0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 10">peptidylprolyl isomerase</fullName>
            <ecNumber evidence="2 10">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A041965</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="2 10"/>
    <dbReference type="EMBL" id="CACRXK020000702">
        <property type="protein sequence ID" value="CAB3984142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5I0"/>
    <dbReference type="OrthoDB" id="1902587at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.50.40:FF:000006">
        <property type="entry name" value="Peptidyl-prolyl cis-trans isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052273">
        <property type="entry name" value="PPIase_FKBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46222">
        <property type="entry name" value="PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46222:SF3">
        <property type="entry name" value="PEPTIDYLPROLYL ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00254">
        <property type="entry name" value="FKBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54534">
        <property type="entry name" value="FKBP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="7 10" id="KW-0697">Rotamase</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3984142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="23629" checksum="105107D4A20034C3" modified="2020-12-02" version="1">MDLFRSVLACIVLISSCKASADYEEKGFGVGLVHKPTNCKRVTKRGDHIAVKYNGTFVDGSTYVPTSKKPFEFTLGEGQVITGWDLGLLGMCVGEIRQLVVPSHVAYGNWPVGDKVPPKSTIEFFVELLQIKDTFTDRDMVSDTFSQIDTNGDSMLSNDEVAKFLKKQNYPDGPGEKSHSHIIREIFLEEDKNSDGTISHKEFSGPKKYIGDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GC64</accession>
    <name>A0A6S7GC64_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Sterol carrier protein 2</fullName>
            <ecNumber evidence="21">2.3.1.155</ecNumber>
            <ecNumber evidence="22">2.3.1.16</ecNumber>
            <ecNumber evidence="5">2.3.1.176</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="31">Acetyl-CoA C-myristoyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="28">Non-specific lipid-transfer protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="32">Propanoyl-CoA C-acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="27">SCP-2/3-oxoacyl-CoA thiolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="29">SCP-2/thiolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="30">SCP-chi</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="33">Sterol carrier protein X</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="48" type="ORF">PACLA_8A047500</name>
    </gene>
    <organism evidence="48 49">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="48" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="48">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="34">Mediates the transfer of all common phospholipids, cholesterol and gangliosides from the endoplasmic reticulum to the plasma membrane. May play a role in regulating steroidogenesis. Stimulates the microsomal conversion of 7-dehydrocholesterol to cholesterol. Also binds fatty acids and fatty acyl Coenzyme A (CoA) such as phytanoyl-CoA. Involved in the regulation phospholipid synthesis in endoplasmic reticulum enhancing the incorporation of exogenous fatty acid into glycerides. Seems to stimulate the rate-limiting step in phosphatidic acid formation mediated by GPAT3. Isoforms SCP2 and SCPx cooperate in peroxisomal oxidation of certain naturally occurring tetramethyl-branched fatty acyl-CoAs.</text>
    </comment>
    <comment type="function">
        <text evidence="35">Plays a crucial role in the peroxisomal oxidation of branched-chain fatty acids. Catalyzes the last step of the peroxisomal beta-oxidation of branched chain fatty acids and the side chain of the bile acid intermediates di- and trihydroxycoprostanic acids (DHCA and THCA). Also active with medium and long straight chain 3-oxoacyl-CoAs. Stimulates the microsomal conversion of 7-dehydrocholesterol to cholesterol and transfers phosphatidylcholine and 7-dehydrocholesterol between membrances, in vitro. Isoforms SCP2 and SCPx cooperate in peroxisomal oxidation of certain naturally occurring tetramethyl-branched fatty acyl-CoAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="25">
            <text>3-oxo-(9Z-octadecenoyl)-CoA + CoA = (7Z)-hexadecenoyl-CoA + acetyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:47400"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:87695"/>
            <dbReference type="ChEBI" id="CHEBI:87698"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="25">
            <dbReference type="Rhea" id="RHEA:47401"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="43">
            <text>3-oxohexadecanedioyl-CoA + CoA = tetradecanedioyl-CoA + acetyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:40343"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:77081"/>
            <dbReference type="ChEBI" id="CHEBI:77084"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="43">
            <dbReference type="Rhea" id="RHEA:40344"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="26">
            <text>7-dehydrocholesterol(in) = 7-dehydrocholesterol(out)</text>
            <dbReference type="Rhea" id="RHEA:62960"/>
            <dbReference type="ChEBI" id="CHEBI:17759"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="40">
            <text>an acyl-CoA + acetyl-CoA = a 3-oxoacyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:21564"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:90726"/>
            <dbReference type="EC" id="2.3.1.16"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="40">
            <dbReference type="Rhea" id="RHEA:21566"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="39">
            <text>butanoyl-CoA + acetyl-CoA = 3-oxohexanoyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:31111"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57371"/>
            <dbReference type="ChEBI" id="CHEBI:62418"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="39">
            <dbReference type="Rhea" id="RHEA:31113"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="24">
            <text>choloyl-CoA + propanoyl-CoA = 3alpha,7alpha,12alpha-trihydroxy-24-oxo-5beta-cholestan-26-oyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:16865"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57373"/>
            <dbReference type="ChEBI" id="CHEBI:57392"/>
            <dbReference type="ChEBI" id="CHEBI:58507"/>
            <dbReference type="EC" id="2.3.1.176"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="24">
            <dbReference type="Rhea" id="RHEA:16867"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="38">
            <text>decanoyl-CoA + acetyl-CoA = 3-oxododecanoyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:31183"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:61430"/>
            <dbReference type="ChEBI" id="CHEBI:62615"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="38">
            <dbReference type="Rhea" id="RHEA:31185"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="42">
            <text>dodecanoyl-CoA + acetyl-CoA = 3-oxotetradecanoyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:31091"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57375"/>
            <dbReference type="ChEBI" id="CHEBI:62543"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="42">
            <dbReference type="Rhea" id="RHEA:31093"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="41">
            <text>hexadecanoyl-CoA + acetyl-CoA = 3-oxooctadecanoyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:35279"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57379"/>
            <dbReference type="ChEBI" id="CHEBI:71407"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="41">
            <dbReference type="Rhea" id="RHEA:35281"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="37">
            <text>hexanoyl-CoA + acetyl-CoA = 3-oxooctanoyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:31203"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:62619"/>
            <dbReference type="ChEBI" id="CHEBI:62620"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="37">
            <dbReference type="Rhea" id="RHEA:31205"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="44">
            <text>octanoyl-CoA + acetyl-CoA = 3-oxodecanoyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:31087"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57386"/>
            <dbReference type="ChEBI" id="CHEBI:62548"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="44">
            <dbReference type="Rhea" id="RHEA:31089"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="23">
            <text>propanoyl-CoA + tetradecanoyl-CoA = 3-oxo-2-methylhexadecanoyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:46344"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57385"/>
            <dbReference type="ChEBI" id="CHEBI:57392"/>
            <dbReference type="ChEBI" id="CHEBI:86042"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="23">
            <dbReference type="Rhea" id="RHEA:46346"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="36">
            <text>tetradecanoyl-CoA + acetyl-CoA = 3-oxohexadecanoyl-CoA + CoA</text>
            <dbReference type="Rhea" id="RHEA:18161"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57349"/>
            <dbReference type="ChEBI" id="CHEBI:57385"/>
            <dbReference type="EC" id="2.3.1.155"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="36">
            <dbReference type="Rhea" id="RHEA:18163"/>
        </physiologicalReaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Mitochondrion</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Peroxisome</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="48">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.155" evidence="21"/>
    <dbReference type="EC" id="2.3.1.16" evidence="22"/>
    <dbReference type="EC" id="2.3.1.176" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020000558">
        <property type="protein sequence ID" value="CAB3982950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GC64"/>
    <dbReference type="OrthoDB" id="542135at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003988">
        <property type="term" value="F:acetyl-CoA C-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050633">
        <property type="term" value="F:acetyl-CoA C-myristoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015501">
        <property type="term" value="F:glutamate:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005313">
        <property type="term" value="F:L-glutamate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015175">
        <property type="term" value="F:neutral L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006869">
        <property type="term" value="P:lipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00829">
        <property type="entry name" value="SCP-x_thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.47.10:FF:000016">
        <property type="entry name" value="Non-specific lipid-transfer protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1050.10:FF:000001">
        <property type="entry name" value="Putative Non-specific lipid-transfer protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="entry name" value="SCP2 sterol-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="entry name" value="Sodium:dicarboxylate symporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050746">
        <property type="entry name" value="DAACS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018107">
        <property type="entry name" value="Na-dicarboxylate_symporter_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003033">
        <property type="entry name" value="SCP2_sterol-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055140">
        <property type="entry name" value="Thiolase_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006102">
        <property type="entry name" value="PRK08256.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958:SF63">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958">
        <property type="entry name" value="SODIUM/DICARBOXYLATE SYMPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02036">
        <property type="entry name" value="SCP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22691">
        <property type="entry name" value="Thiolase_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00173">
        <property type="entry name" value="EDTRNSPORT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="Proton glutamate symport protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SCP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00713">
        <property type="entry name" value="NA_DICARBOXYL_SYMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00714">
        <property type="entry name" value="NA_DICARBOXYL_SYMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="20" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="19" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="14" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="13" id="KW-0445">Lipid transport</keyword>
    <keyword evidence="15" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="17" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="18" id="KW-0576">Peroxisome</keyword>
    <keyword evidence="49" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0769">Symport</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Thiolase N-terminal" evidence="45">
        <location>
            <begin position="6"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase C-terminal" evidence="47">
        <location>
            <begin position="269"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="domain" description="SCP2" evidence="46">
        <location>
            <begin position="421"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="48">
        <location>
            <position position="944"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00014545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00023140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00024058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="ARBA" id="ARBA00024073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="ARBA" id="ARBA00024471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="ARBA" id="ARBA00024509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="25">
        <source>
            <dbReference type="ARBA" id="ARBA00024514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="26">
        <source>
            <dbReference type="ARBA" id="ARBA00029287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="27">
        <source>
            <dbReference type="ARBA" id="ARBA00030531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="28">
        <source>
            <dbReference type="ARBA" id="ARBA00030851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="29">
        <source>
            <dbReference type="ARBA" id="ARBA00031275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="30">
        <source>
            <dbReference type="ARBA" id="ARBA00031346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="31">
        <source>
            <dbReference type="ARBA" id="ARBA00032093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="32">
        <source>
            <dbReference type="ARBA" id="ARBA00032316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="33">
        <source>
            <dbReference type="ARBA" id="ARBA00033178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="34">
        <source>
            <dbReference type="ARBA" id="ARBA00045738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="35">
        <source>
            <dbReference type="ARBA" id="ARBA00045994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="36">
        <source>
            <dbReference type="ARBA" id="ARBA00047485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="37">
        <source>
            <dbReference type="ARBA" id="ARBA00048001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="38">
        <source>
            <dbReference type="ARBA" id="ARBA00048004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="39">
        <source>
            <dbReference type="ARBA" id="ARBA00048553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="40">
        <source>
            <dbReference type="ARBA" id="ARBA00049178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="41">
        <source>
            <dbReference type="ARBA" id="ARBA00049268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="42">
        <source>
            <dbReference type="ARBA" id="ARBA00049270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="43">
        <source>
            <dbReference type="ARBA" id="ARBA00049306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="44">
        <source>
            <dbReference type="ARBA" id="ARBA00049542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="45">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="46">
        <source>
            <dbReference type="Pfam" id="PF02036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="47">
        <source>
            <dbReference type="Pfam" id="PF22691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="48">
        <source>
            <dbReference type="EMBL" id="CAB3982950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="49">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="944" mass="102381" checksum="B25539C34DAE9B6E" modified="2020-12-02" version="1" fragment="single">MGKQRVFVAGVGMTKFEKPGSSDKDYPDFAKEAATKALKDAAISYTDVEQVVCGYVYGDSTCGQRAVYEIGMTGVPVYNVNNACATGSSALFLAKQLVEGGISSCVLALGFEKMEKGSLQGKYSDRAIPIEKHIGVMAETHGIAPAPVTPQMFGNAGREHMAKYGTKPEHFAKIAYKNHKHSVNNPLSQFQTDYTLEEIMNSRMVYEPLTKLQCCPTSDGAAAAVICNEEFIKRNPSLRSRCVEILGMEMATDLSSTFNENSCIKMVGYDMTKVAAKKLYDKTGIPPTSAQVIELHDCFSTNELLTYEALGLCPEGKGGELVDSGNNTYGGKHVINPSGGLISKGHPLGATGLAQCTELCSQLRGECGKRQVPGAVIALQHNLGLGGAVVVAFYKKAFPQNEDIDRTDIGGSDFKSATVFEHMAERLRKEGAEVVKKIKAIFSFEITDDSNGKTGRWTVDLKNGSGSIKYGANAGKVDCTLTMKDEDFYKLGTGSLNPQTAFFQGKVKVSGNRRLTKVTRFRDIQSLPCSERLKARTTTIRSAVHFMDACVFLGFLIGALVNDPVQDSSNPKKIIMYISFPGEILMRLLKMVILPLIVSSLIVALAVLDAKAAGRLGRRALLYYFTTTILAVILGIILVVSIKPGEGKGDKKGTESKHVEPVDSLLDLIRNCFPDNLVASAFVSVQTKYKEMDEKVYFVNKSITDVMMDPKNMSSFLSSNMINPWSVSSMAAQGQVKIIKTETTYTYDGLESSSKMNILGIVCFSVAFGAILSSMGEAGRPVTVFFTILLEVIMKLVTLIIWYSPIGICSLIAGKVASMESISDVLTKLGLYMATVISGLVIHAVIVLPLAYFIFTRKNPFKFIFGLRAALLTAFGTSSSSATLPVTFKCLEENNHIDQRVSRFVLPIGATVNMDGTALYEAVAAIFIAQLNNIDLTFGEIIIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCM6</accession>
    <name>A0A6S7GCM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107336424</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000915">
        <property type="protein sequence ID" value="CAB3985747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCM6"/>
    <dbReference type="OrthoDB" id="5974944at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="573" mass="64587" checksum="EE886A422C0BA562" modified="2020-12-02" version="1">MDFADPQGGKGTCDRKAATIKPHMKIFHDEGNNIESASDMKTAILSSGGVPAVNVAVSGPPDDSEFSKVEIKGVSFYTNVEYTRGGFKVWKAYNIGKGKVIPRNKFSISSFSVPQVTNLDIGSQESQSEFLTVKSKKKSEKEEDDLHSESLPVSREDIVDDQNESHLFSCPEPGCIKRYQRFHSLQRHLDCGKHKRELEQETIFDRAAIGYAERLDKQSGCVPELQAFQNAKSPRQHVLSMGWAPKSAQTKRTRFNEKQKNYMTTKFNIRETTGFKANPADVAKAMMTTKDDNGDRMFTSEEFVTTQQVSSYFSHLASKKRLPNAQDDDDALAAENETDLQDLQELVVQETVAIKQLEEELEEYCLSEPHSRIISTSIDVFVPNSVLTRPTTILKIYYQSMNRIPKYAVVASTSICVIRHSTANNKYMETRCLMHRRLTIGGSPWLKNYIDFNTKKRRIGEEKDCWDNSDYPKDSPYYSAHNKKVIGKFKDEAAGVPVIEFVGLRSKMYSYVKESGGGGMTAKGVKKTGCTCSKDGIQNYRSLHKKTFNLTQFSVYSTLSSETKNSTNQRTNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GD45</accession>
    <name>A0A6S7GD45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein K02A2.6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A017837</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001030">
        <property type="protein sequence ID" value="CAB3986536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GD45"/>
    <dbReference type="OrthoDB" id="10060843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="267"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="426"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1165"/>
            <end position="1187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="272"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="286"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="427"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="456"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="1170"/>
            <end position="1187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3986536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1187" mass="134698" checksum="748B55D0856C1A1F" modified="2020-12-02" version="1">MLNPNEEEENTEEISMATTLDLKPPPPFDAEGDNSSLAQRWKEWRERFNMYTVAANIEDDAQKCAVLLYVAGPSVHKIFKTLQDTGTDFKTALEKLDEYFQPQKNVIYERYVFKQTHPTPGESVDSYITRLRTLAETCEFESAENEIRDQFVMTCSSHGFHTKLLRETDLTLAKLITMARVKELAEKQALNISGHNSWNNVNRVKDEGNDEAKDKVRHAKYVPEPHKQNKCRNCGNEFKQGHKEVCPAKGKTCRACGKLNHFARVCRSRKNPPKDSKKDSRESVRVAQQQTQKQSPPNSSDDEYTFAVSSSKITNIQIQINGTPIAVAIDSGATTNILDSEAFACIRKRNKHVQLEPTQTNIYAYNAVQPLPLLGKCHLTVESNGKRTISTFYVVNGKAGSLLGNETAAELGILKIKVKEVSKFHSMKTTGSRGRNEINTGSHSNGSDANSQSDSGNREIRDRNSLKNIDINTQKILDKFPELSDGIGCLQNYEQSLHVDRTVTPIAQRPRRVPFHLRKQVSDKLEELQSLDIIEPAEGPTSWVSPIVAAPKPHNSDEIRLCGDYRRPNQALLRERHPIPTVDELMEEMSGAVVFSKLDLKAGYHQIVLEENSRNITTFCTHKGLFRYKRLPFGLSCASEVFQNAIQQALQGLNGVRNIADDIIVWDKTQAQHDKNLEALLQRLVINKLTLNLEKSRFNQPSLWFYGYILSKDGLSADPKKVEAIKNFKTPADASQLRGFLGLANYCSRFIKDFSTLTAPLRELTTKSCKSMVLSHSVPKSLTLDEIRTATLNDPELQSVTSAVKEERWNKTDSRLSQYRNQHEQLTVSECGVILRNSQIVIPKSLRSRVLSIAHEGHQGIVKTKMLVRSKVWWPGVDKQVEQTVKECIPCQAAVHQSPKCQPPLNMTKLPPHPWHTFNADFCGPFQNGEKLLVVIDAYSRYPEVEVMQSTTTTVVISKLQRIFARHGYPEELITDNGPPFNAVEFTEYLSARGVHHRRITPYWPQANCEAERFMKTVTKAIRTAHSEGKRWQSELDLFLLNYRSTPHSTTHTSPAELLFNRSIRNKLPSFSSLQHGDGPEEHRVVRDKEENEKMKVHADRNNNAKESQLKVGDYVLMQVPKDNKLSMSFNPKPFQVIEIKGNMVTARNTERIRNVSFFKCLTNYKNASEEDQNDEEEEFDDDSNQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEG2</accession>
    <name>A0A6S7GEG2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079783</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000634">
        <property type="protein sequence ID" value="CAB3983620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEG2"/>
    <dbReference type="OrthoDB" id="5985347at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16666" checksum="DD90C29D5AEB9595" modified="2020-12-02" version="1" fragment="single">MSLIKQDREEFANENLFKTTQHGFRSGKSCITQLLDVVYNIGKALDCSKEMDMIYLDFSKAFDSVPHDKLIFKLSQFGITGPLLDWFSDYLSARKQRVVVDGFSSSYLDVTSGVPQGSIVGRLLFLIYVNDLPDAAKHRRIPMFADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJ72</accession>
    <name>A0A6S7GJ72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcription factor Sox-3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A013001</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000816">
        <property type="protein sequence ID" value="CAB3985001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJ72"/>
    <dbReference type="OrthoDB" id="6247875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000122">
        <property type="term" value="P:negative regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030182">
        <property type="term" value="P:neuron differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22028">
        <property type="entry name" value="HMG-box_SoxA_SoxB_SoxG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.30.10:FF:000002">
        <property type="entry name" value="transcription factor Sox-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022097">
        <property type="entry name" value="SOX_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050140">
        <property type="entry name" value="SRY-related_HMG-box_TF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270:SF324">
        <property type="entry name" value="SOX DOMAIN-CONTAINING PROTEIN DICHAETE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270">
        <property type="entry name" value="SOX TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12336">
        <property type="entry name" value="SOXp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00886">
        <property type="entry name" value="HIGHMOBLTY12"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3985001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="511" mass="57697" checksum="ED954276FE2A4F9E" modified="2020-12-02" version="1" fragment="single">MPDPGRLKCPLNAALDSVMSANYNMNGSQPVNVKMLLNTELIKQEPLDCTDLSQTTECDVDTSHTQGIIADPGRLTGHMNILDISSGVVNNNRNGSVNMASDHDINLGDEFSTNTEHKNSSKMAAGSDRDPDRVKRPMNAFMVWSREKRRVMAQENPKMHNSEISKRLGDKWKKLSTNDKQPYIEEAKRLRAQHMKDFPDYKYRPRRKTKTLLKKEKYNLPLLGNCEGGPPVQRDIAQVSDYYSYPNLGYPTQDLYNTMYNSGYNTALSNTPFQGVSTSASSYYPASVYTIQGGQIYSYNSEQHLTNGSDIQTMPAVSYPQETIMLTNGGVQIKKELDSEQVSRRSYPGDLHEMINVYLPADATVNHQTRTNHVEHFQHQDSTQYSTTHMDRNTMNASVIRPNPSAATMPLTHMCNFIVFRNAQTFVNIRASITILGAVDMKSKFYLGNNLVMFALSTRFLLAFSDCKSQFPGSNVFPKVHGRVWGRFTRLKYATPITRAITLILVDYICQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKU2</accession>
    <name>A0A6S7GKU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061922</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001207">
        <property type="protein sequence ID" value="CAB3987637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKU2"/>
    <dbReference type="OrthoDB" id="5972251at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="25262" checksum="0BA2AAFFF75B896A" modified="2020-12-02" version="1">MNIDVLSPSSDSSSDSRTSSSSGESLDEFHRNILQGGEVLGYQFEPRRNTNSVSAELADNEDDQSMSIDEEESFVRLGNLDWCLCEHCQIMDREEECVCCHEIEQVSNKNQEVMEYTKPTLPYNCITDNPGFHTVCLDRWVLQAAWLDYKQQYGSTAYEGPEHKISRHVAYRQLVRWCWGVVGKEIRVVLPSCAVSCIRAHFPPPGDEDDFEFVGFRFADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GN72</accession>
    <name>A0A6S7GN72_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like GTP-binding insertion domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001823">
        <property type="protein sequence ID" value="CAB3991299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GN72"/>
    <dbReference type="OrthoDB" id="6775601at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="9563" checksum="FCB70162966FBC47" modified="2020-12-02" version="1">MNVRLAAQTLSSSVADAIGFLNLSMKLSEFQNSDGTMKFIRMIDRLFDMLNSRSPLGKGYKQPLRPASKDIWTEILMSTATDTCSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUQ6</accession>
    <name>A0A6S7GUQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Integrase recombinase xerD-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A041919</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003036">
        <property type="protein sequence ID" value="CAB3997154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUQ6"/>
    <dbReference type="OrthoDB" id="6133491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="59"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="3">
        <location>
            <begin position="316"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3997154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="625" mass="72585" checksum="DE481B761400A27D" modified="2020-12-02" version="1">MIPFRSIPETCFLANNKSARDHPDFVSEAIVKLLKGQYIEEQSEPPYCVNPLSVAKGKKLRLVLDLRNINGHLLKQSFRYEDLRSLSQLFEQNFWFFTWDLKSGYHHVDIYVAPRKFLGFSWNFNGKLRYFIFCVLPFGLSSACYCFTKLLRPLVKRWRMMSYASFVYLDDGISGHKRRIDASAASIIQKKDLSCSGLKTNEEKCHWEPMQIGEWLGMIINAINFEFEIPPRKIEKVKKNIQEIHGQGIWIASHIFLMEELRFWLDNLRYLNGYNIRPKVSLEPLTIHTDASGVGYGGYFTSLRDVNIHGHWSVEQSGKSSTFRELSAILLVLKTSVQRLQHKKVKIFSDSQSACRIVQVGSRIFELQNIAVDIFNICFINDIMIETQWIPRAENRTADVLSKTIDLDDWKLHPELFVMLHRAWGPFTIDRFAANYNTQLQRFNSRFWCPETEAVDAFTKNWSNEANWVCSPVALIIPVIRHMSVCKAKDEFKIGVWEDFSKIQDPSLVSLASSLSRVVLNAKDRNTTVRYAYGWNRWKIWSMSKIGVWYLPAQPMFVALYLRQFLDSAKTTSPVDTAVYSIRWGHILAAYPTRQSNRWFNLPTKAADEFSLDQENLKILSHLTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVT5</accession>
    <name>A0A6S7GVT5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064492</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002790">
        <property type="protein sequence ID" value="CAB3996063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVT5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11629" checksum="5A4A8469FFE5D12D" modified="2020-12-02" version="1">MEDKPEQTQVVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAEPEESSSNNMIAYVGVVIALISLALAFNQHQRETKKPEPKYIPKTVEVTRKADALKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GYB5</accession>
    <name>A0A6S7GYB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002633">
        <property type="protein sequence ID" value="CAB3995289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GYB5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="50" mass="5434" checksum="4D6D4C64E86207CD" modified="2020-12-02" version="1">MADKFTNDANPWGANPQSSSGVSEVLPTNTTADRESVSTKKLLKTSFEKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H002</accession>
    <name>A0A6S7H002_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Anaphase-promoting complex subunit 11</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Cyclosome subunit 11</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A005305</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Together with the cullin protein ANAPC2, constitutes the catalytic component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. The APC/C complex catalyzes assembly of branched 'Lys-11'-/'Lys-48'-linked branched ubiquitin chains on target proteins. May recruit the E2 ubiquitin-conjugating enzymes to the complex.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subunit">
        <text evidence="14">The mammalian APC/C is composed at least of 14 distinct subunits ANAPC1, ANAPC2, CDC27/APC3, ANAPC4, ANAPC5, CDC16/APC6, ANAPC7, CDC23/APC8, ANAPC10, ANAPC11, CDC26/APC12, ANAPC13, ANAPC15 and ANAPC16 that assemble into a complex of at least 19 chains with a combined molecular mass of around 1.2 MDa; APC/C interacts with FZR1 and FBXO5. Interacts with the cullin domain of ANAPC2. Interacts with UBE2D2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the RING-box family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002736">
        <property type="protein sequence ID" value="CAB3995816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H002"/>
    <dbReference type="OrthoDB" id="1681166at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005680">
        <property type="term" value="C:anaphase-promoting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097602">
        <property type="term" value="F:cullin family protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031145">
        <property type="term" value="P:anaphase-promoting complex-dependent catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16456">
        <property type="entry name" value="RING-H2_APC11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000111">
        <property type="entry name" value="Anaphase-promoting complex subunit 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051031">
        <property type="entry name" value="RING-box_E3_Ubiquitin_Ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024991">
        <property type="entry name" value="RING-H2_APC11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11210">
        <property type="entry name" value="RING BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12861">
        <property type="entry name" value="zf-ANAPC11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0498">Mitosis</keyword>
    <keyword evidence="11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00054113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00062360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00078349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3995816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="77" mass="9065" checksum="3F024F012D115EE0" modified="2020-12-02" version="1" fragment="single">WTGVASWHWIANDDNCGICRMAFDGCCPDCRMPGDDCPLVWGQCSHVFHMHCILKWLDSQQMQQLCPMCRQEWQFKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4F4</accession>
    <name>A0A6S7H4F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068684</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001858">
        <property type="protein sequence ID" value="CAB3991480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4F4"/>
    <dbReference type="OrthoDB" id="10487242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="18563" checksum="CF512B4D0D81FDD6" modified="2020-12-02" version="1">MTDDPIITPGMEEFLLQTESGLSAGPITAGLVAPQGILLLTSNNNVFIRADGRIIVLKYHKMPFSVDDRKKLKAGIGSIAETHTIMKWLNPLTTVPVNQQYCPAIGIRSSVLDAFINLKSKDVSATLRQISDRKKMTRNAKDKFNLGWAIIEKDQDEGHEQQTADTIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4N5</accession>
    <name>A0A6S7H4N5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060557</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001867">
        <property type="protein sequence ID" value="CAB3991530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4N5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="75" mass="8254" checksum="572F6FF6E1C26328" modified="2020-12-02" version="1">MLSDFEPGRLSTNPQISIPEIAKNVIQKVAKNVTKVLLKSKVPLKSKVPLKSKVPLKSKVPLKSKVPLKSKVLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HG42</accession>
    <name>A0A6S7HG42_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039108</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004791">
        <property type="protein sequence ID" value="CAB4004044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HG42"/>
    <dbReference type="OrthoDB" id="428159at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045053">
        <property type="term" value="P:protein retention in Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026847">
        <property type="entry name" value="VPS13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026854">
        <property type="entry name" value="VPS13_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166:SF146">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13A-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12624">
        <property type="entry name" value="VPS13_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22387" checksum="06EE6D28B3765DD4" modified="2020-12-02" version="1">MFFRYSVLYLFLQAELELPIEVKSGYIGKLSAEIPWSNIYTKPVVVKIEDVFVLAAPVTEIDYDAEQAEERLKAAKRRKLQAIEKSNKPLNNESSQESRLPDSYTFVEKLTAQIIKNVQFNTPFITVGRGVLQGDCLSPLLFNMSFNTFIQHIKSEKYRQLGFWKLSEIGIPCNPIHWFQFADDAAVISSQEKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HI48</accession>
    <name>A0A6S7HI48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065506</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004846">
        <property type="protein sequence ID" value="CAB4004256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HI48"/>
    <dbReference type="OrthoDB" id="5949636at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF2">
        <property type="entry name" value="TESMIN_TSO1-LIKE CXC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="95"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="690" mass="77371" checksum="F148717ADB739D06" modified="2020-12-02" version="1">MMAFSWSHCIICQKDTSEELRCPLRSHGADKSDPRSVYNSFLQNVSEFRDSLDVILPVSLTLPLELNVDALIEKEAAWHKSCHLQFSKSKLNKAKERAARKRKQDQAKPEQEKPTKTRILSSGIKKNCKENCILCDQTCTGPLHNVTTFATDEILRRMITELQDNTLLPKISGVDLIAAEAKYHMKCMTNLRNRYRSHLTRARQESCEEDEKMKESQAFIELNAYIESSVENEKLFFLLSELHSLYVSRLQTLGVQKQVNRTRLKTSILENFPDAQEQNDGKNVVIIFKKAIQGIVKEVVQQRDFSEDAVILAKASAIVRKDIFSHEGFKFSGSFPQDCQARSVPASLKSLMSMILSGVNIKNTEAQESQPCLTVCQTIIFNTNAKERSTVQSKTGQSRHTKSREPPLPLYLGFNVHAMTRSKTLIAKLYQMGLSVSYLRIMELEDMFATSISERFEADGFVVPACLKKGVFTVGALDNSDHNPSSMTAASSFHGTGISLFQLPTISNPGEERPPVALPPQGTGHALPEEYATVYPVELNTSKAVVPTRDMKEIVSCMAEAKRNEEQWVVHSLEKLDEESVTSGDTLAWAAFHASAQTEEDPPALTALLPLFYEKAATPAMVKHGMDVIWQAVTFLNPGQVPIITVDQPCLRLRRWSSGSGQTHMESSVCSYAWWPAYRDGSMECAWRFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQI9</accession>
    <name>A0A6S7HQI9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A061616</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003194">
        <property type="protein sequence ID" value="CAB3997810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQI9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="237"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="606"/>
            <end position="631"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="666"/>
            <end position="698"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="458"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="606"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="666"/>
            <end position="678"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3997810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="715" mass="80231" checksum="24E660BC51E8D945" modified="2020-12-02" version="1">MLIHDGDTYLWTGSLADLKCFVDEILNLKGKWSSPGGEAKLFCATKPDFVIKWFGWRSQKLVIQVDSAENFLTQKFESLVNKSKGNKADSKNGTDGVLLAMAIQRILLSWRVKQKESEAAIRRQDDVICTLNEENQFLKARLLALEESFLKITYNVNKDKEPGLSVYKAKSIDKAAAFHASEQSNKSNLSSINTELLNTSHGNSLARHNNNGQCNADDLNNNQIDFANDDAVFSSKQQNENNTHKGINSNLQSESQQSTNIEGNKLRYDLAMADGHAMYSSVINTLLPDNNHLTDTNSDLAKDLSSTRTINDEITALAMKNLKLSWAGDFESLKRVVSDYIKFDGRWTSPGGEKKVCSNPDTSITWWKNKKFLLVEGNQAERIIELFIVILTNIASFRPSDRPGNINIDLPNSDKINLVSSCSCKCNNLTVDIEGIKLDNVVLESRMEHKTNTNTEIINNVQQELLKLQSKCDMLADRVGNIESSNDERDSDTIASLERQNKFLVEEVKTLNFKLENLEKKAKAENAKAENAINIHANDISSPKTTHVNNEMHVMSISNLIPSPKTTHVNNEMHVMSISNLIVDDSEEISIVSSVNDPYHTNVGHNTCNGNQPSGSLPKEPCYPHESNQQQSIPVRITSIRKSKQTRKKVNLRQTELNRSNTVYSVESCVSTQGSKQSRSSDKNKSHNNHRKTNNEGFCTGLSMRDKIGWFNFYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HR20</accession>
    <name>A0A6S7HR20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Methylosome 50</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A036191</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005803">
        <property type="protein sequence ID" value="CAB4007456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HR20"/>
    <dbReference type="OrthoDB" id="10260946at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034709">
        <property type="term" value="C:methylosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052139">
        <property type="entry name" value="Methylosome_Comp_WDR77"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46853">
        <property type="entry name" value="METHYLOSOME PROTEIN 50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46853:SF1">
        <property type="entry name" value="METHYLOSOME PROTEIN 50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4007456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="356" mass="39501" checksum="6A981787CA33A3DD" modified="2020-12-02" version="1">MDVFPSEVYPSIDAIDHSPDGKLAIGSSKLTGRYWNGSLWLFKTPDQAPDSIYAPDNKHCSCCASTDAGCTDLTWLDEKRLAFASDNGIIEIWSTGESFNEVEILANLTGHDDIVQSISVNCDRVKIVSGSLDMSIRVWDLEREACTDTFQGHSDAVHGVCFRQEEKEIFASASEDGSIILWDLRNDKPARRLLNSSHHSAAPLCLAWDQTGKYLAIGYKDGSISCYDLRNIDQPVFKRKPHCRDVNAVAFCPKRPSWLASVSNDCIVNILDLNANQSCYQNNDHKDFVRDLSWSPVDGCLRTCGWDTQIIRHTTTMIEEGMDAKVNKTVALETSVIARVGCNGVISTVNKSNLIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HV17</accession>
    <name>A0A6S7HV17_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Transmembrane 43-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A019970</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Endoplasmic reticulum membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus envelope</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TMEM43 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005734">
        <property type="protein sequence ID" value="CAB4007230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HV17"/>
    <dbReference type="OrthoDB" id="410725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005637">
        <property type="term" value="C:nuclear inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071763">
        <property type="term" value="P:nuclear membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012430">
        <property type="entry name" value="TMEM43_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13416">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13416:SF2">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07787">
        <property type="entry name" value="TMEM43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4007230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="46680" checksum="CB0E94E6E39BD3C8" modified="2020-12-02" version="1">MYRGSSGQSGRPSDIGYGYSPDQHTKVHYTRNPSFLDRVGSSLCAAVFGFFIVVGAFPLLYWNEGRAVKTAAALDEGLKYVIHINNPRQISRSEDGKLIHVTGVLQTDQVVSDPEYMVAIKAVKLKRQVEMFQWVEHKSERKFQEGGETRVETTYSYRKEWRSGLVNSAQFDKSQHHQNPSSMVITSKHYEVDHVYVGAYELSEGLVNRVNNFKPLRLTEIPATHDKQLRLPQLRDGILYHSRDPMRPEVGDIRVTFSYAGFCGKPGSPHGDPMTVSIVAKQTGHMLGAYETDSGYSLELLYPGKMSAKEIFEAEHASNVAVTWALRGVGWLMFFLGFIMMTSILTTLVSWIPIVRDIIGLGVTLACVAMATSFSLVVIAIGWIRFRPLLGCALLAAAAVPFILSKFKAKSEKKSEKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYQ1</accession>
    <name>A0A6S7HYQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024832</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003568">
        <property type="protein sequence ID" value="CAB3999352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYQ1"/>
    <dbReference type="OrthoDB" id="10066972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33480">
        <property type="entry name" value="SET DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33480:SF1">
        <property type="entry name" value="TYR RECOMBINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="28900" checksum="8143852611FEB8C5" modified="2020-12-02" version="1" fragment="single">MNRGAIADIVRKEDLIKMLGAFLLEKEGERDRQLVSQKMRELGRLLQQLMVVENNEAVQLSGFIKLEKFDIIIKAVRETTGFMLPIRGQQEVNIPSLVLKLGHSLSKCATLLHNQAILARNDLMAKEIKYFQKLMRSEWEYKISHHSLSTLKERKMNAVQVLPLAEDMKKLRKFGEEGITEHSRQLKLSPTSKNWTALVRLLLAGVVMLNKQRSGEAAKLLLNSYQGIPAWRKSTTSEILSSLSPLEQRLSQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZE4</accession>
    <name>A0A6S7HZE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Tripartite motif-containing 45-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A062660</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006235">
        <property type="protein sequence ID" value="CAB4008810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZE4"/>
    <dbReference type="OrthoDB" id="5977875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd19757">
        <property type="entry name" value="Bbox1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047153">
        <property type="entry name" value="TRIM45/56/19-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027370">
        <property type="entry name" value="Znf-RING_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000315">
        <property type="entry name" value="Znf_B-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462">
        <property type="entry name" value="BONUS, ISOFORM C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462:SF300">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00643">
        <property type="entry name" value="zf-B_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13445">
        <property type="entry name" value="zf-RING_UBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00336">
        <property type="entry name" value="BBOX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57845">
        <property type="entry name" value="B-box zinc-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50119">
        <property type="entry name" value="ZF_BBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4008810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="388" mass="43933" checksum="871ABEA75B5E3832" modified="2020-12-02" version="1" fragment="single">MARASRTNPIDKLEENLQCTVCLEVLKDPRTLPCFHSFCKACLEGVVKTCRGKAPHRSRRRPIREFPCPNCRTMFVLDPGKQVADMPRNHFICNMVKATAVLDRGTGVPCSHNCSQSYSVARCVTCEKFLCRECLADHNKYRGHSGHSVLTMDELSKPENRTKIMDRMHCNEHTGKRLKVYCETCDKLICKDCMDFKHVKQGHSCVLVKDVASKYKELLVSNNKAMEDALTEGKAVIQRLTLTTNELDRNAEDAKNEIAQRKEFVVKKVVEISSQKAKALSKKVDEIHNGKRANLDRQADETKLYLENVKTSVQLSKKLIDEGTDEEIISTQKIMLDNATILLAKREEYFKAPTLSAKLSCTSPTCTEQINEWILRGLRTSLGEVIHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6I2</accession>
    <name>A0A6S7I6I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004293">
        <property type="protein sequence ID" value="CAB4002221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6I2"/>
    <dbReference type="OrthoDB" id="5984344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="502" mass="56356" checksum="089111A4D24010FF" modified="2020-12-02" version="1">MNIIKKTTEHLHPGQVPVIAVDQPLFAVAKQIQWNWPQTHGEQNFVILLGGLHIEMVALKMLGDWLEDSRWTSALVEAGIANPGMANSFAKALNVKRARCAHQLTASALYALLNKSICRERRRNGIGTYSILRQMKMSRRFSSIAVDQAHKQNNTLVKGDGGDIGLTENPGALRLWMISGPEIARMITEFEDDTAFITDEKTDQAKHHEERHRVQISFAKDVKALVHVMEDMGNPFLEESADLLVLVTRTIADASMVATVHQIEAECLTEEKRSICEPIKKNKYKLFSSPPPKIPSKDKQQIAMLKSDCGLYSRLYIACQTRDGDLDKFFEHENQGCPPSLSQHGNLCLPGNKSDLLQCTGAVIPVVTDSPNSIDVTIIDSAAAINMLKPTPAVKTFHDYAEHVFIPYIKGQLQHTKRFDVVWDEYTPNSLKETRKKRGRGIRRRVQSSTKLPSKWHEFLRVNENMTELFAFLANHILSADFGSNKQVISNHRSTSSLQSAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9J8</accession>
    <name>A0A6S7I9J8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062684</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007600">
        <property type="protein sequence ID" value="CAB4012690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9J8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15629" checksum="3A43F89B5EA3BCB7" modified="2020-12-02" version="1">MKRMRTVADSDSATSESDVENSYNTDNEVETDSASESDSDNVDDTSSEVERQPYLIRAKPTALNLENVLTELYRLIGNNKKQSKWNKSRIKNIPILQPKSSRKRTKSSTKSAKNVDNTEMNDGSMDWLKLETKAKHNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDW7</accession>
    <name>A0A6S7IDW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002083</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008258">
        <property type="protein sequence ID" value="CAB4014330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDW7"/>
    <dbReference type="OrthoDB" id="10230918at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="19838" checksum="3674C68FD87AB016" modified="2020-12-02" version="1" fragment="single">LRKLRNAKWSWTTPKPRLDDAKTIAGTRSHHSFVPVSSDSLQIWRISADVDGTSVKVTSLSQAQASQSFTHGQYLAAVYDKAWYLGVAEDISHENEDVLVNFMRSRNPGTTIHSFVWASTRDECWIPFEHVLCTVQEPLQITKGRIKQYKLNSPAIEMIEDSFNKFLDGYYNCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMD5</accession>
    <name>A0A6S7IMD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010211">
        <property type="protein sequence ID" value="CAB4018897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMD5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13125" checksum="F8560C4A1ABFDD59" modified="2020-12-02" version="1">MGCMFELYNDGRAVNDEEAVEESKIDEEGIMGAAVDRSSYETTVACKTDEVADTDGTAKALVVARFAGGFRGRIPVTGEILLLSSGTFTISWVVMTGSFPRPVTLFLVFNSVIFSTGRLVDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPQ6</accession>
    <name>A0A6S7IPQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000756</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010570">
        <property type="protein sequence ID" value="CAB4019656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPQ6"/>
    <dbReference type="OrthoDB" id="5957988at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042838">
        <property type="entry name" value="KIAA1958"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963">
        <property type="entry name" value="SIMILAR TO RIKEN CDNA E130308A19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="22338" checksum="FA64C7C05B001632" modified="2020-12-02" version="1">MAAFSGGERFPHLEVSSIEELRNNAKNTNTKRSTIVWLGVFKSWAKERGFSEATETYDAFDLDKILEKFYCEVRNKDGGEYEPDSLRVMITALDRYLKDCGYQKSIIRVRKFCKSKEVLEEKAKRLREEGKGKRPNKARSLTQEEEELLGTNGNLCNKTAESLINTIMWWLLTQYFGLRGRQEHHGMTTRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQD1</accession>
    <name>A0A6S7IQD1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010676">
        <property type="protein sequence ID" value="CAB4019896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQD1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="entry name" value="Farnesyl Diphosphate Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19086">
        <property type="entry name" value="Terpene_syn_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="Terpenoid synthases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="47463" checksum="2B49CD409CD1ED78" modified="2020-12-02" version="1">MACSKELQFPKEWLKYHHDSVNEAVDPELFDEEEYFKWVVALGLCDRHTAKKYNMSVRPYHLMRYMVEVIPNNSLCRELFKLWTNLTGSIFVSDDKKETFTQIEMRQLCDAFQMLDRQLCEQFPRLPTLDEMKQSLRKKVTDEKLIPQLLELMDFTNSVAKSLLQKDNFAEDDVRDFWRRLCVSFALYIEACKTESSTCVVPNVEIVWRRTFLGAACPWLHILEVTSGAIGKVRAHVPLINELYCLSAFHCTTVNDIYSHEKEISDGTRVTNTVRIMAESKEVSGESQAALKAVQILNSITKVMYQKIEKAKEENPDNAELCTLLDNIGMATAGWYFFHHYSARYYDAQWRLTLVGVEQEELEEWRKCTDEEPLDEVKHFLQRSSPKANQISDYIISGVINIHANLLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IT14</accession>
    <name>A0A6S7IT14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086515</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010827">
        <property type="protein sequence ID" value="CAB4020189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IT14"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="146" mass="16625" checksum="9F6FF3A5D29B3D3D" modified="2020-12-02" version="1">MSINAAKTYIKRLQEKLEILREKNGGILALVRHDEIDEEIKQSDILHEEATRIIVHIEGVLEKLTLLYCSQPLISVKNYQTLIDLFEVFVGNSAAEAIAELKLTSLNYAEAIAILEKRFGDKQLIIKSHMDAMVMTRRQLDSSTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ITZ0</accession>
    <name>A0A6S7ITZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A076330</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006322">
        <property type="protein sequence ID" value="CAB4009062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ITZ0"/>
    <dbReference type="OrthoDB" id="6007872at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="34"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4009062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="44176" checksum="461DA36AB6CDDDC0" modified="2020-12-02" version="1">MACRKSSPSKQSTHEPPKKRGKSHHCDGVPKPTKEALLDALKGVENEIKKLGNELLEKKLEKLRGQVRGLLENQEKEINNLRGEIHTLKKEVDRQKAKNEKLEKVLVVAQVTWLWEKHLARFVVDSSRTIYQSGWMDQMEDYLKEMNTNQNRFTKIQKKLKTTWTEEHWQVVFTVRNERNGIAHPDLIDLDLVESQLKKMYPKHQKVLGEMLDELKMTASLMKFGRLADFYEKNKKLFPTQRKRGKRVDADALKNIISWNCKFEQIDGLQSIEHEEAKKYLTMYVDNPRKIDHYLFIVDFIKDGNSKRLGKLAWEFEGLPTEYGEALRELKKLLPNPDDESEDTNLDKTIAKLHIPDFLPKHLWKDGIEIVEKYFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IUW8</accession>
    <name>A0A6S7IUW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nephrocystin-3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A026061</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012354">
        <property type="protein sequence ID" value="CAB4023175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IUW8"/>
    <dbReference type="OrthoDB" id="6145253at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45641:SF1">
        <property type="entry name" value="AAA+ ATPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45641">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13374">
        <property type="entry name" value="TPR_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="15"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0802">TPR repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="658" mass="76136" checksum="AC3E316B629140B1" modified="2020-12-02" version="1">MKDYKSALESDQHALHIRLKLLGEDHSETARSYDSIAVTQHEMKDYKSALESYQHALQIRIKLFGEDHSDTALSYYNIGNTQYEMKDYKSALESHQHALQIRIKLFGKDHSDTARSYYNIGSTQHEMKSYKSALESHQHALQIRIKLFGVDHFDTARSYNNIGGTQLEMKDYKSALKSHQQALQIRLKLFGEDHPGTARNYDSIAVTQHEMKDYKSALESKQKSLQIRLKLFGEDHSDTAKSYDSIAVIQYEMKDYKSALESDQHALQIRKKLFEDDHSDTATSYHNIGVTQHEMKDYKSALESHQHALQIRLKLFGEDHSDTARSYNSVAVTQHEMKDYKSALESHQHALQIRIKLFGEDHSETARSYYNFGGTQHEMEDYKSALESHQHALQIRIKLFGEDHSDTARSYNNIGGTQLEMKDYKSALVSHRHALQIRLKLFGKDHSDTARSYNNIGGTQHEMKDYKSALESYHHALQIRLKLFGQDHSDTARSYTSIAVTQYEMKDYKSALESDQHTLQIRLKLFGEDHSETARTYSSIAVTHYDMKHYKSALESNQRALQIRLKLYGEYHSDTVESYHTAGVIQRALKNYKAALKLHHYVVQTRLKLHGKYHSQTARSYWSLGTTQREMKDYKSALESQQHALDIDFKCLCHDLGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXF9</accession>
    <name>A0A6S7IXF9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015718</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012859">
        <property type="protein sequence ID" value="CAB4024135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXF9"/>
    <dbReference type="OrthoDB" id="5982250at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="301"/>
            <end position="461"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="481" mass="55128" checksum="7F492C4219629EEB" modified="2020-12-02" version="1">MAKPETSEISRPIAHLKPPSEFDVDVSNVAHSWKRWREEVELYMELAMVGKKEETIVKLFLYIVGNQGREIYETLSFDQEPEERSFKGIVEAFSNYCDPKKNETVERYKFFTRVQEAGETLDKFITDVKILAATCNFEQLKESLIQDRIICGMTDSTSDSSDYEEIKMVKVDDKRKPEISSSTKQFPKRLYASITVGKQPVNFQLDRGATCNVISLSMLERCLGKVQLKGTTQVLKMYNKAMGTGKFDEQYHVTIDPDATPVVHPPRPVPIALKDDLKAKSGNHFKVVTEPTPWVSNMVIVRKPTGKLRICIDPKDLNKATRRGHSPIPTIDEILPDLREARVFSAFDVRNGFWHVELDEESSLLTTFITPFGRYRWLRMPFGLTSAPEEFQRRQHHVIENLPGVVAINDDILVIGNGATREEAERDHDVKVYALMRRWREKNTTLNADKVKLSCNEVTFMCHLLTDEELKPDPKSNLRDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXH2</accession>
    <name>A0A6S7IXH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A089226</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011505">
        <property type="protein sequence ID" value="CAB4021569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXH2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="82"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4021569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="12845" checksum="4DE4C6CA30F7A04F" modified="2020-12-02" version="1" fragment="single">MRLKRELPCSDEKNASRQPESDENAQDTTPSGQFDRIWKEWAEDIGVPGTTNLPAGILLPTKGTTLGKTSAGSEKSAIEPGVVAAGIIASIIFLVLVVVAFVLVRRKNRKKQREESVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J0L6</accession>
    <name>A0A6S7J0L6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063313</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012076">
        <property type="protein sequence ID" value="CAB4022649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J0L6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="219"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="253"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="453"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="253"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="324"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="453"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="795"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="795" mass="89551" checksum="20384E6681FDFCA5" modified="2020-12-02" version="1" fragment="single">MNVEDKKQERSKAKMAVTVAARRLIGAYNRDCEYDILKDSMFELEKVFDDFCVINEEYELIVSDEKYAEHRVVNGEDIMTYRDNVKRCYEEARSVFVSVKTTIEQKARRQSAGPVKVALKNDICRIHELITVVDESFKLENVNMAALQLDKNDLQSILNIICDNMAKLGSIETQEQVNLIQEDVDAIIRAVYNCIRKINLFLHEQQAFVKSLHIETATLPSETNTPPENINTVSPPEINTNIPPEDTETINTMSPPGNQHQHPPENTETINTMSPPGNQHQHPPENTETINTMSPPGNQHQHTPENTETINTMSPPGNQHQHPPETINTNTPPDINTNTPPEDTDTINTMSPPETNTPPETISTTSPSVINTNIPPEPIYTATHPEIIDTPAIETNTIPPMLPINAPPINYSSPFGTQVTTNITKANTPLPTLPGTSTGFCLNTSAQTFIPSTTFHSESSSTSGQTHLSQQCQNPTNLSTGFPPFAMPIGSNLPRMASSYYSNHNQSRSNLSTSPMYTTPSGHQPTVPLINTRPSHQDSTIRLKRMALPTFSGLRKDWPEFKAVWKSMAESASYNKTALAHELKNSVKGEAKHRIKSVFVTKPEAYDIMWEKLECHYGDTTASVQAALEDLQRLKPVKEEDYKALVELVDEVESAYSQLEELNQLNTLTMRDVDNLTDLLPTHLKVNWRRKYRDLSSAEKLQPFTPLMKFLDRERSVVARLAENQHSKKRGNDNARGYSKTFHVERGAKHGQRTYYKCAFPTHRKDTINHTTEQCKEFQKLSISGKDGRYELLKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J6J7</accession>
    <name>A0A6S7J6J7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Helix-turn-helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007683">
        <property type="protein sequence ID" value="CAB4012921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J6J7"/>
    <dbReference type="OrthoDB" id="6259957at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00304">
        <property type="entry name" value="RT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058912">
        <property type="entry name" value="HTH_animal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301:SF11">
        <property type="entry name" value="GIY-YIG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26215">
        <property type="entry name" value="HTH_animal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helix-turn-helix" evidence="1">
        <location>
            <begin position="162"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF26215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="496" mass="56500" checksum="CE5467DFF7450175" modified="2020-12-02" version="1" fragment="single">NLEKRRLNSAFNFLHWILLFPDITLAPSKDCDNGPSTEISNSAKINTVPSAIMEKYSFQTTTAYEIAYKIITMGLTMGSPVSVVVAQIVMQRLEERALSSHPNPPPFWFCYVDDTLTSVDKHQKNDFLAKNDFLDHLNKQNPSLQFTMEPEKDGKIAFLDCITLVKRAHAVCSSSETVEDELQHLDKVFTINKYSKPFVNNVIEHSRKTIPTTDETERKKTIATIPYIKGTSERIARILRPFNISVAHKPTVTLRNTLTKVKDPTNTKTRIGTVYKVTCAECPATYFGETGRTLDCRIKEHKRSTEKQDVANRIAVHHMETNHRIDCEGATSLVGSTDRIFRLTVGPRAQFFSSGPPSRCQLSKPTYYLMTRIRLIRCRMELSTLFIWAAIGCANITKCNIETQFDIIRDNTIRLACEQAHWEKVILSTSEIGLCTVNCLSRLIIECGRKLKFEFTKFLLLMILRPNATHDVGHDWPYNVAYDNLTKRELISIVLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8W1</accession>
    <name>A0A6S7J8W1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GTP-binding Di-Ras2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A002571</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015568">
        <property type="protein sequence ID" value="CAB4028575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8W1"/>
    <dbReference type="OrthoDB" id="5973437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020849">
        <property type="entry name" value="Small_GTPase_Ras-type"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24070">
        <property type="entry name" value="RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23121" checksum="0940CF760492910A" modified="2020-12-02" version="1">MKNNRIRSKIDNYKFVLFGSAGVGKTSLVKRLVHDEYRINYIPTVEDIYRYFIQSNNRLCNLTIVDTGGTHDFPAMKELNIKNCAAFILVLSVDDKKSLEQFKKDAQTVLECRPNARILTVVNKVDIEERSFSSIQVIRYMEQQRTRYPQFQYKYLETSAESNMNVREIFYEAVELLSPGFNQQRKAGKRGLPQACTIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JB58</accession>
    <name>A0A6S7JB58_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A050353</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008278">
        <property type="protein sequence ID" value="CAB4014372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JB58"/>
    <dbReference type="OrthoDB" id="4369127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001995">
        <property type="entry name" value="Peptidase_A2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50175">
        <property type="entry name" value="ASP_PROT_RETROV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Peptidase A2" evidence="6">
        <location>
            <begin position="54"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4014372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="436" mass="48450" checksum="4E8131E42E5C696A" modified="2020-12-02" version="1" fragment="single">MLEKLEQEANYVAPGDSSDNQVYPSHLSPRQHTRVTQLVGNKCSVNCHLDGQAVTALWDTGAQVSIVSETFMHKQSLTRKLRNVEELLGVQGKIELKAANGTPIPYCGWIELSVRLNETQPDILVPFLVTKENIGPPIIGFNVIELIVKEANSISDDTETFVNAMKKSFGSCKGDKVQALIDVISANEPDDLCQVKCRKTDILIPKNQSIDVPCCANTGPINRTVPVLFEPIDNTELPSGLLLQEELKSIKQGNCSLINVKITNQTNHDIIFPGRTVVGHLQLVHSVTPIEVKLKEPKATTTNQHFDQTQSQECDNVSAENLPPVDLTGLNGEQLKQVKQLLYDERESFAKDDDDVGCIPELTMDLTMTSEKPVQKNYASIPRPLYPEVKGYIEDLLNRGFIKKLKSPYSSSVVCVRKKDGGMRLCVDYRELNRNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCI6</accession>
    <name>A0A6S7JCI6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084189</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015556">
        <property type="protein sequence ID" value="CAB4028557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCI6"/>
    <dbReference type="OrthoDB" id="5988221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="105"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="41238" checksum="38210AC203F4C31B" modified="2020-12-02" version="1" fragment="single">ADTRRLLCSVFMLYFLPLMFCVYTSEILYDTPYMDGVHSGYKGLFTAKIYGRKFLRRRIRYYSHSSASFNPCILVLELSGDIHPHPGPVSNPRRSGKGRHTLLVLTINARSLNNKLRDFQSMVYTSDCDVVVVSESWLTPSVLNKEILPNGYDIYRCDRQDGKRGGGVLIAIKNEIESKRRKELESNCEIVVCEIHISKGMKLIICGFYRPPSSKNEYLMNFGNSLENIVRDGTPVILCGDFNFPEIDWELQVAPGCDNLPNIFCDMINDAFLSQMNYSPTRVSDSTSNILDLVFTNLPDQLYGLSTFDCQLNTDHLGISFFLKTTVKRTKFSRSVYNFKKADFDGLRETLARSSWNFIFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JE05</accession>
    <name>A0A6S7JE05_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent RNA helicase</fullName>
            <ecNumber evidence="6">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A081331</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">RNA helicase.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="domain">
        <text evidence="6">The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the DEAD box helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020014672">
        <property type="protein sequence ID" value="CAB4027220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JE05"/>
    <dbReference type="OrthoDB" id="7396459at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18787">
        <property type="entry name" value="SF2_C_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056330">
        <property type="entry name" value="CTT_SPB4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025313">
        <property type="entry name" value="SPB4-like_CTE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24031">
        <property type="entry name" value="RNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13959">
        <property type="entry name" value="CTE_SPB4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23681">
        <property type="entry name" value="CTT_SPB4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01178">
        <property type="entry name" value="DUF4217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 8" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="198"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="201"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="218"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="229"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4027220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="296" mass="34888" checksum="49B3F8ACFAAFEF62" modified="2020-12-02" version="1">MSLHGKMKHKRYKIFDAFRKLPSGVLICTDVMARGVDIPEVHWVIQFDPPSNASAFVHRCGRTARLGRQGNALLFLLPSEDSYVEFLSINQKVFLQLYKMDEVTDVIPKLRKNAIKDREIYEKGIRAFVSFIKSYSKHQCSLIFNLKELDIGKLAYGYGLLHLPRMPELKRRETVHFDPVEVDPIDIPYKDKIREKRRQLRLSEEKEKTPQIRKPKRKTENDAWSKNKEKLKKKEAKKKLNKENEIKRNKRKLNRLDEAEMDELVEEARLVKKLKSGKISKVEFEERVKDDDPDLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JF11</accession>
    <name>A0A6S7JF11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015648">
        <property type="protein sequence ID" value="CAB4028684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JF11"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="234"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="467" mass="53693" checksum="3BE57FF4B71C6327" modified="2020-12-02" version="1">MSRRTKNSMSTLSEADVENLVAELPSTDEDKEQVCPTEMSDHKNEDENHRSETCGETIERKLSEHVVDVAGKDKAEINRKQSTCEECQNRKDEITEIKAIINEIKTNQNEDREKSIIKAIESDERIKSLHEENSKMTEEIKCLKATISELVTDNENIKNILDVKQNEWLKIAENPNPSKCSKTATTTPTTSVQNQFELLNDENYESGISSPELDSNEQTNTYVNSQIHEYRSKAQSKFENRKNQTHAQQKEKKNHVHAKRTGSEKEKEIKKVLVIGDSMVKHIDRVKIERAAGCQSVVHSYSGARVEQISSKINEYWSEGEQYDTVLLHVGTNNLASEEPEEVASKMDGLIKDLKDHAKKIAISSVIKRYDNRVPASKITRFNIFVKNLCMKHNTTFLDNDHIDRSLLNRSNLHLNQQGARVLGSVFCTYLKSFRVGNNRQFFHQAHGHRNREWTMYLKYVNQIMKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQG5</accession>
    <name>A0A6S7JQG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043214</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007661">
        <property type="protein sequence ID" value="CAB4012858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQG5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="37"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13254" checksum="428E0FF84D192EA6" modified="2020-12-02" version="1">MECFANSVNRKLEVISNEISSIKEFKAYSILSLEEVVSDLKKEKLVLSNKNDKLEKENKDLCVSLSELRAKVIDLQDEKASLLTAMKLIQREGKDELEENKKRIEALENENNNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZY0</accession>
    <name>A0A6S7JZY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043413</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011644">
        <property type="protein sequence ID" value="CAB4021822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZY0"/>
    <dbReference type="OrthoDB" id="5964810at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="592" mass="67737" checksum="1B56C9596626C565" modified="2020-12-02" version="1" fragment="single">MSKVDHFIGFVNRPYFHQDVAFGIRKLKLESGETIEMPNVIRTVTRSTMVAQYQHFCAEQSFDPLSRSTLFRILEVREASQRKSLSGLDNTAVDGSKAFQTMIFIAEQLVNVGVDKSWSTDIENRLNAGKQYLKTDYKVHCQESSSPCADHCRSFSLSDPCDKDFQEKCKHSHVMTCSFCDNIKSVVGDIEEKIKQHSHPLFTKEHQEDLLDDFYEANDHIKAWKAQIMRSANQELAKQNVLRDLDESSVLAVMDWAMKFPQIKYREKQSEWFGKRGMSWHVSSVVSKTDDTEELSVTSYVHLFDQTTQDWFAVASILENLIDHIKSSKPLVRKIFLRSDEAGCYHNNLLITAIQDIAHRTGVAACLQYCNEGHDVCDAQQMHVASKKHLVRGTSISVAKISKSATHLNVIKIKNVSSYHNFEYVENGIKVWKAYGIGKGKKLSNKEIYVTHQEPTAIEVIEPFMESTDGRKLKINTNDSMTEEVQGLFECNEPGCNYVFNSFDQLELHREIGTHSRFIKNESVFDTLRREWAKKFTTIEDNSSTQSVQPSSKSLKNGKTDLQMGWALSKPKTGSIRFSDKIRQYLTFQFDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JZY1</accession>
    <name>A0A6S7JZY1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">L-ascorbate oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A016865</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024399">
        <property type="protein sequence ID" value="CAB4038616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JZY1"/>
    <dbReference type="OrthoDB" id="2121828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF394">
        <property type="entry name" value="FI03373P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0186">Copper</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="4">
        <location>
            <begin position="96"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="5">
        <location>
            <begin position="305"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4038616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="507" mass="57053" checksum="0B9201EE98DB2D18" modified="2020-12-02" version="1">MRYQISKGLFGALIIYEAQGDIHNKLGPFEDQPERKTISVVDRIMTIPTMVTNAFCLPDGSKLPIQFTSHYQLLVNGVKLTTNVQESSGNESHKHNYYIVGGKNYRSRIICATMGTVFVISIDHHKMHVMAVDEYPVKPFETDFLIMHVGEVFDFILKSKKDLLPGTNYPIKIQSLAVKCNNNSELAGRSFAFLVYTNKSHEIRPLTSENLIVQNDRCNNKSNPCTIMNCPFKIMPTDYSGPGTYLKCYDVLSLELLYSTPYFKISTSDDIAREYFFNLEGVKPKYSIINGVAFLSHDVPVLQRNGANQCTCPFNTATRFVISSINEGQPGGENLTHPIHMHSYTFFVAKIVYPEYYENGTVKAANKDLSMSQCGPPEWRNGAPEGISVTSTTIRKSTVMVPASGYVVIHFFEDNPGYWLMHCHTDWHLNDGMAIAIGENPERASTPPELMNTNTKDFCFSVKTFIGKCNSLRALYFYKISTTTTRGPMGGLKPEVYHYILLSLTLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1E0</accession>
    <name>A0A6S7K1E0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025017">
        <property type="protein sequence ID" value="CAB4039156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1E0"/>
    <dbReference type="OrthoDB" id="8019190at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="1">
        <location>
            <begin position="209"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="333" mass="37672" checksum="07FA283BC367AD22" modified="2020-12-02" version="1">MRSYAIAAATVVILVGIALYSSESSAGPAKVILKGAKKLLPKLAGRTIRIASAFGSRGIFRIPKVHRAFGYLKRTHPRVAKYLKISTGMFGGAGTAAGTQALIDYLDDEELMAEVQQIKTYAETVERQGEITQEEVEDLEGLIYGLSYALDEQKVLQIEGQVNDRPLHEESTDSFGVITPSLLVLGRKLRPWPDRFDKTDLQQHADLRERWKHRKAIVNQFWRTWSNRYLTSQQQRNKWQEDKPDVKEGELVLLEKEKMKRNQWPVARIQEVKMGRDNKIRSVILALPPRDADGKIKKGAPLLITRSIHNIFPLEATRDGEKIPPLQSSGQQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC16</accession>
    <name>A0A6S7KC16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083884</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028067">
        <property type="protein sequence ID" value="CAB4041278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC16"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="29143" checksum="5B449C7B31609795" modified="2020-12-02" version="1" fragment="single">MTDLTTISDLTLTEGEVRYVLRNLDEEKATGPDKIPAVLLKNCAASIAPSLCELFNKSLSSGQLPSEWKLSNVCPIPKKSPLHEVSNYRPISLLSLVSKVFERCIYNRLIDHISSKLNELQYGFQRGKSTTSQLLHVLHNIHEMLEKRCQVDKIYLDFAKAFDKVSHDLLLVKPITLASKPLPVLSGVPQGSILGPILFLIYVNDLPDSVSQDTAVSMFADDTKCHRAVRNPQDRVILQSDLNNITNWCQDWRMDLNKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KE87</accession>
    <name>A0A6S7KE87_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055779</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010158">
        <property type="protein sequence ID" value="CAB4018768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KE87"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12285" checksum="04807F0BF44A36C0" modified="2020-12-02" version="1">MAMDLVALKLNLDLKDSPTNLHFQSTGFDEGYLDCSPVDGGTEPIEEVQISPRSVYVELDRNRQDETANDGAYQKLLKRHLTGYEIPARTEVESSYEEVYHSYQKEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGK9</accession>
    <name>A0A6S7KGK9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">HAT C-terminal dimerisation domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A011601</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035713">
        <property type="protein sequence ID" value="CAB4044655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGK9"/>
    <dbReference type="OrthoDB" id="6754956at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052035">
        <property type="entry name" value="ZnF_BED_domain_contain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481:SF10">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="6">
        <location>
            <begin position="104"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4044655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23201" checksum="FDD2D041AD0E0D3B" modified="2020-12-02" version="1" fragment="single">MRNMSNISSEKKEYLAKLVRNRFNFMYGDAHGVCYLLDPRYLGDDMTRRLRNEIEDFIYNFLKNDGTTNKERQEQLAQEYTAFRIEALRERQENTFRFRLIGQSKSVLQWWKADGTDWPLLQDLATCVFSMAASSAASERSFSTFGFIHTRLCNRLGPEKVKKLVYIKTNTAQISGTDLFDYASDCSIDFSMDVNILED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KS27</accession>
    <name>A0A6S7KS27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Histamine H2 receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A082764</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037102">
        <property type="protein sequence ID" value="CAB4044980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KS27"/>
    <dbReference type="OrthoDB" id="5967635at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246:SF27">
        <property type="entry name" value="ADENOSINE RECEPTOR, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246">
        <property type="entry name" value="OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 10" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 10 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="12"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="53"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="96"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="161"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="391"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="430"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="231"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="282"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="231"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="282"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="311"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4044980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="470" mass="53075" checksum="17C137FED9563637" modified="2020-12-02" version="1">MFQCGAISPLPILSYITASISGVLCLITVPGNLLICMAVYIDPYHRLRTPFNIVVANLAFADLIVGCITEPLSVYLHIKEGLGREITVVEIRAIHLSYFISCTASVLSISLLALERYMSISYSFKYKLYFKVRRFVLVSVIVWLVAVGLSTVYILTNYVFYTFVFINIAVFWTLGVTTFCYVKILRKLKKVEKRMKKSTVIGNTNPILENVSPLSKPYVVKVKENVTTYLQDKQRGVTNNESNMKRGGSQIEENINGKESCSSELGHSSSYEIEADNITNSSIENDKGVNNSESNAGFDPNEENVHEKDSPNQIEESGQNSALPQLGDDHCFRKIKKESNGDERIDTNQENTPEKDSAFLQLGTAHDVCKTNVATYNEQTSNKYNILVTKTYIIVSLIFLACYIPALLIIYTMNWCHTCSCTAIHIMRDLQFIIVIVNSSVNPFLYSIRFPHFRRAISKILQDIRDEVLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L034</accession>
    <name>A0A6S7L034_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078647</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017994">
        <property type="protein sequence ID" value="CAB4031932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L034"/>
    <dbReference type="OrthoDB" id="10631050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18979" checksum="8A2C5A785202CAE2" modified="2020-12-02" version="1">MSTENCEITDTKKLSFSEKRSNNRSESTLSAINKSRTLEGLLYILRQLLAKCDGDKTYGYLPYEDAYDKESFSRFDLNADTLKHVLQSLDTEYDKSVLKAMIFATSSRRKVYELGIKPENAVHFLAKAVYAFKECEDAVIAAEKTIKEKDKARLEQLNENIEAIEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L0X3</accession>
    <name>A0A6S7L0X3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040749</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019193">
        <property type="protein sequence ID" value="CAB4033373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L0X3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="55"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="10253" checksum="D24B7E4BBBCA05F5" modified="2020-12-02" version="1" fragment="single">MLTVDNIIYVTHVGMYISTQLTSSTSGSDSGVVCAGSCDGGGGGCDGVRGGGGSNSSSRSKSSGSSSKSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSGSGSSSSSSSSSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LHX1</accession>
    <name>A0A6S7LHX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035973</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022472">
        <property type="protein sequence ID" value="CAB4036842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LHX1"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17900" checksum="604EBAF18802A4FD" modified="2020-12-02" version="1">MQSSDHIAKKKANQDLLHHGRLSLEHCSHEKDLEVWISYDLTWKKHVQTQSAKANKILGYAKRTTQRIGSVRPRRTIYLTVVRAHLAYSSQVWAPQTVELIKEIERIQRRATKYILQLPYRCPDTYKERLIQTDLLPLSYWHEYLDMVLTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LKD5</accession>
    <name>A0A6S7LKD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A018344</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024048">
        <property type="protein sequence ID" value="CAB4038303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LKD5"/>
    <dbReference type="OrthoDB" id="2668416at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058353">
        <property type="entry name" value="DUF8040"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF85">
        <property type="entry name" value="GH03217P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26138">
        <property type="entry name" value="DUF8040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF8040" evidence="9">
        <location>
            <begin position="86"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="DDE Tnp4" evidence="8">
        <location>
            <begin position="200"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF26138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4038303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="386" mass="44651" checksum="E6A4E92571D2E535" modified="2020-12-02" version="1">MADSDTAIVGLAIIARDLAKRLKRRQRKWEKYFFCRKKKMAILFLRLSEIYLRRETVLRRFWQEPSRGKSLFWERTASQWVDDNLWVENFRMSRNSFLAICRELSEVLHKKDTRFRKAITLEKRVAVCLWHLATGEDMRSLGWRFDIGKSTACQIVNDVCEAIAVVLLQNVIKWPTGEALKSVLKGFKEEWQFPQCAGAIDGTHVPIAAPSEYPSNYYNRKCFYSIIMQAVVDHAYRFIDIYIKWPGKVHDARVFSNSSLFHKGQQGQLFPNWTENISNCEVPITLIGDAAYPLLPWLIKGFQDDGNLSRSQIQFNRSLSSARMVVEGAFGRLKCRFRCLLKRNDTSLQKLPVKIAACCALHNICEMNGKSLTQSGFRMMLIIIST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LM91</accession>
    <name>A0A6S7LM91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol poly from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A077268</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024413">
        <property type="protein sequence ID" value="CAB4038632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LM91"/>
    <dbReference type="OrthoDB" id="430476at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="3">
        <location>
            <begin position="66"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="218"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="153"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="452"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="161"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4038632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="702" mass="79634" checksum="771AF86232CDCF35" modified="2020-12-02" version="1">MNRTLVESVRSMLADAKLPHKFWAETLSTAVYLRNRSPSVAVKGKTPFEAWTSQKPNVKHLRVFGCEAYAHVPKDERKKLDSKARKCILLGYGTETKGYRLYDPNRARVFRSRDVQFNESSQEPEVVKVQEPKQNTLVELEFEEPIDVEEPVVNEEPEPQVTRRSERDRRPPAYYGEWATAANHDKNEPRTVKEALSSPQKAKWVKAMEKEMESLKTNEVWNLVELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIEKGKEHLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEDGEIFIIAVYVDDILLAGKNDPKINEVKQALAEQFQMKDMGQLHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSERVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKMLGVSYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LP60</accession>
    <name>A0A6S7LP60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A070544</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021870">
        <property type="protein sequence ID" value="CAB4036289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LP60"/>
    <dbReference type="OrthoDB" id="416437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22758">
        <property type="entry name" value="OTU_232R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003323">
        <property type="entry name" value="OTU_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02338">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OTU" evidence="2">
        <location>
            <begin position="6"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="DUF6570" evidence="4">
        <location>
            <begin position="329"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="domain" description="Helitron helicase-like" evidence="3">
        <location>
            <begin position="664"/>
            <end position="791"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="125"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="135"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="166"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="183"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="227"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4036289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="856" mass="98707" checksum="48A6AAC0CEAA629E" modified="2020-12-02" version="1">MRDNPERFIESNTEISWLEYLNNMSMQGTWGDAMIIQAVADQLKLKITIAEMHEGFCEYSIIQPVSSTQQLTHVYLGHIDEYHYVSTLPCTSTSGFVEIYPEQSTPSSQPKQTRTQYMNNLVKQKQLANETQSPEAKERRRVYAKEYRKRKQASESSQTLSIEAKQKKRLYAKQYRKQKQDSESSQPSTLSIEASKQKKRLYAKQYRKQKQDSESSQHSTLSIEAKQKKRLYAKQYRKQKQDSESSQHSTLSIEAKQKKRLYAKQYRKQKQDSPLYICTCCDQLWYKHSVIPVTTLKENNPDVQKRLLNRKSVNNVEWLCKTCNKHLKNNKVPPCAAINGLQFPEKPSFFDLNELECRLLAPRLAFQKLMQAPRGRQLKINGNIVNVPADVVNTVNMLPRFPNDTSTIKVNLKRRLQYKSSALSLNVRPNKVAEAAKWLVNNGNLYKDEGITFNDTWLEDNSNNQMLFDDSDNDQTSEGSENVVDCNAESLNCDTECKTQQSSACDDDDEHWSEDEAEIPAGITDTMLTSPDFVTDNERQHILNVAPGEGNRPMSIFRDKYSEELAYPGIFLGQKRPDNTNRLTKVHYSEICKSELRRSDRRAAMCVENIFFKTKKLQMKILLGQSQVALRKCQRNSSTITAGQLKQPGALDNMIHHDQGFKFLRAVRGSPPYFEKAKKDIFAMIRQLGSASLFCSFSSAETQWTHLLRILGKLVDNKTYTDTELENLNWEEKSRLIQSDPVTCARHFDYQVQKFLQNFLLSSAAPLGKIADWFYRVEYQQRGSPHIHMLIWLENAPTFGEDSDCDVVSFIDTIITCEKPTENPDLLALVNRQVHRHSHRCRKKSKSVCLITHSHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5L6</accession>
    <name>A0A7D9D5L6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transposon Ty3-I Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A034671</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000020">
        <property type="protein sequence ID" value="CAB3976928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5L6"/>
    <dbReference type="OrthoDB" id="5984437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="477"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3976928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="477" mass="54910" checksum="6960F4030E7456BD" modified="2020-12-02" version="1" fragment="single">MQVQKVWAQYYCSCKGEKWRAVSYALRNLTEVERRYAQTEKEALALVWACERFNLYVYGREFQLETDHKPLQCIFGKSSKPSARIERWVLRLQCHHYNVVYRPGNTNIADALSRLNQPNPKDLSRETEEMIRLVVQESTPVALTPREFERESDKDPELSSERHYIQTGDWSHCKMPSYLYVKNELCVIGKLVLRGDRIVIPQSLREKVLKSAHEGHQGIVKTKSRLRTKVWWPKLNVDAEKICKSCRGCQVVGQFSVPEPMMRTEPPMGPLQDIAIDLMGPMPTGESLLAAVDYYSKWEVEQQNRTLLKALKVAKAEGKKWQEVLPKFLLAYRSTPQVNTGATPAYLMFGRELKTKLPELRRQDSILNQAIKERDWSQKLNQKAYADYKNKASNNPDGEIYRRDSSFVKPFNSPDELDLPSAICCMLNPDENTRSTLGLSVSVDNNLPILYPAIVSEKFLSFTFYLATSLPVHYCDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DC24</accession>
    <name>A0A7D9DC24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A072531</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000459">
        <property type="protein sequence ID" value="CAB3982053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DC24"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043814792" evidence="2">
        <location>
            <begin position="24"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="114"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3982053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="479" mass="52582" checksum="D10ECF9EE46B369A" modified="2020-12-02" version="1">MRFWTEPFSLLLLTVSLLCVAEGNLTNCTKARPFLTKRQPGRIHSSLLVGKQRKRKLNIDHSKKLHGGKWRKDNNTYQDKTVKKQQHVFKGKSKLNVNIQDKPIHWKKLHEMNDSKTSKHNKPTRKHQRIFQGKRKSQIDIQGEQAKSPVMYTSQNGQDQYLTVRTNQHPLGTPLIPQQSQGTQINPNLPSKTFLVTVYGDQIEGAEERLRDALAEQQPTKCPSKCESTPCKQTEEACPCDETVDEAQANQAVSLQAGGPKLILFPNAGRPFGREGCICPCCLCSCSEPGHENYKCGCQNSPSAPCPCSSAMNASIQPLTSSVGSNSSPVYPGTSAVATGNQVASWTGGTSSCPCSCCPCACTQPQMYPNYQCGCASQSPTPCPCNNQGWNYDQSGAENNIARSSENSPYTSSVPTNNGPVVQTFRSGDYQFESSCDCYCCPCSCPGTKYSAYENSQCTCGQDNQATCTCRRSEVRNMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DF09</accession>
    <name>A0A7D9DF09_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DNA replication ATP-dependent helicase/nuclease DNA2</fullName>
            <ecNumber evidence="5">3.6.4.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="24">DNA replication ATP-dependent helicase-like homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="31" type="ORF">PACLA_8A059267</name>
    </gene>
    <organism evidence="31 32">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="31" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="31">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="25">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Mitochondrion</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the DNA2/NAM7 helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="31">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020000706">
        <property type="protein sequence ID" value="CAB3984194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="306218at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017116">
        <property type="term" value="F:single-stranded DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18041">
        <property type="entry name" value="DEXXQc_DNA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd22318">
        <property type="entry name" value="DNA2_N-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000789">
        <property type="entry name" value="DNA replication ATP-dependent helicase/nuclease DNA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001170">
        <property type="entry name" value="DNA replication helicase Dna2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050534">
        <property type="entry name" value="Coronavir_polyprotein_1ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026851">
        <property type="entry name" value="Dna2/JHS1_DEXXQ-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048459">
        <property type="entry name" value="DNA2_Rift"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014808">
        <property type="entry name" value="DNA_replication_fac_Dna2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047187">
        <property type="entry name" value="SF1_C_Upf1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43788:SF8">
        <property type="entry name" value="DNA-BINDING PROTEIN SMUBP-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43788">
        <property type="entry name" value="DNA2/NAM7 HELICASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08696">
        <property type="entry name" value="Dna2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21123">
        <property type="entry name" value="Dna2_Rift"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-0227">DNA damage</keyword>
    <keyword evidence="21" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0235">DNA replication</keyword>
    <keyword evidence="19" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="15 31" id="KW-0347">Helicase</keyword>
    <keyword evidence="14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="17" id="KW-0408">Iron</keyword>
    <keyword evidence="18" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="20" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="23" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="22" id="KW-0539">Nucleus</keyword>
    <keyword evidence="32" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA replication factor Dna2 N-terminal" evidence="27">
        <location>
            <begin position="585"/>
            <end position="798"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2 rift barrel" evidence="30">
        <location>
            <begin position="984"/>
            <end position="1072"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2/NAM7 helicase helicase" evidence="28">
        <location>
            <begin position="1178"/>
            <end position="1274"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2/NAM7 helicase helicase" evidence="28">
        <location>
            <begin position="1285"/>
            <end position="1347"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2/NAM7 helicase-like C-terminal" evidence="29">
        <location>
            <begin position="1355"/>
            <end position="1576"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="26">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="26">
        <location>
            <begin position="37"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="26">
        <location>
            <begin position="317"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="26">
        <location>
            <begin position="384"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="26">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="26">
        <location>
            <begin position="71"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="26">
        <location>
            <begin position="389"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="ARBA" id="ARBA00032548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="25">
        <source>
            <dbReference type="ARBA" id="ARBA00047995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="26">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="27">
        <source>
            <dbReference type="Pfam" id="PF08696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="28">
        <source>
            <dbReference type="Pfam" id="PF13086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="29">
        <source>
            <dbReference type="Pfam" id="PF13087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="30">
        <source>
            <dbReference type="Pfam" id="PF21123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="31">
        <source>
            <dbReference type="EMBL" id="CAB3984194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="32">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1593" mass="179038" checksum="234B10CC2B1153F9" modified="2020-12-02" version="1">MHHGKVKERVARKSLSLKKTKNKEIGKTGLTADISKYFQKTTSPDDAKDKIPVSSSREQGAQPVAKKQRNDLSSSQNDCSNDQTSKKINGCLDISEDFDSNKISHADCNIKNPLPKNGVLSTSFKSIKTTVQVTSNNSHFNSNNTCAGKIQLQSPDFANSLGSSETQLSDQSENDIQTSLITNDVNSSETLLSKHCMDMSDDLIIPPTPSPVDNSKNTSRISISVNKNERTKTSGYFSNKEPRNYKHIKKTSISSLSRNLDRSKLVPKKTQRSMNDQSLHISELVKEKLTNKSDFKDSNDYKMDEDLISFSGNNKINANGKDDEVDGGTSIRSSSMKLSRKTFKLSRKGKKTETRKPCLSNKKLEPVGCDNDILSAYGVQGNIAGNGLVRDDQNGDGNDDFRSKESRPQFKTRRKLSLDRNNDLKLANNSVQEKRTETTDCKQHSKSCNAQDNMPLQDNMADLEKELAQPAGKNFQEMLDLSLNGDVMCQLVDDVSWSPMDIKTSNRRHAVVSPAKQYVRSKSTELNTLAGNIAVQETEASHRNKDSPDQGYRRYLVLEVYRREILDNVAARNAGIEKVLRLFDESDNSEKYCQLRGDWERTEVEHGDIVNIIGKQSESGSYALNNDEENYIVVYPDMLVTPTSISTSTKCLRRSILDKYFKTEGPNQVMFLGTLLHRVFEASLMAKDFSDKFVLSHATQLLQQPSNLTELYGLGISEDEVLTKVSEYTPFLAEWGAKYFSAEPHPIHGVIDFKDGRVSQSMGDSQVALCVSQVLDIEECVWSPKFGLKGQIDSSVEVKINRNPNILKRNPSLNQTCVLPLELKTGKCYTKLGSVEHRAQVILYSLMMMERYDSTLDTGLLLYLKTGHMLGVPAYRHEKRALVMKRNELIRYLSHTGTRMPGMLQDEYSCKYCPQLNVCTMYHKSVEKGDNKSARMGNLFDKSTSHLSAVHLKYFSQWNELIALEYKAMQENASDRDIWCLSGTEREQLGYCFSKMFLMSCSASEEPGRYLNNFRKDGTNSSTVFAADMHLVKGDYIVVSQQDGVMALATGFLKEISEECISVLLDKDLTQCYHHRNCCKSQAPLYRLDKAEISTGATIQWSNLAKLFFADSEEHEKLRRLIVDLESPRFSRENEVVSSISSSQVSGAWSSQLSSCSMTSPIKSSQDNSELTQILQDLNCDQRKAIRKVLTAQDYALILGCPGAGKTHTIACLVRALVSLGKSVLLTSYTHSAVDNILLKLKQNQVDFLRLGSVQKIHPDIQSYAVSNAAKHITTVKELKCFYESKFIVATTCLGVNHTLFNQRSFDYCIVDEASQITQPVCVGSLRHASIFVLVGDHYQLPPLVQSHKARENGMDISLFKRLSECHPHAVVHLEYQYRMHKHIMLLSNALIYENRLKCATREISETLLDLPDLDTLRADITRLEKQQQDQCTWLLEVLDPQLPVVFIDTDLLPASEVRSGRNVYNESEASLVATITHGLIKSGVDCDDIGVISPYRQQLKVIKQHLNVDHDDDKNSGPQLNVEINTVDKYQGRDKLCVIVSLVRSNAGGHVGDLLRDWRRVNVAVTRAKRKLILLDKIEFTILRSDIAETWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFT7</accession>
    <name>A0A7D9DFT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nucleolar 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A059012</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000778">
        <property type="protein sequence ID" value="CAB3984736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFT7"/>
    <dbReference type="OrthoDB" id="10259720at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012579">
        <property type="entry name" value="NOL7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32337">
        <property type="entry name" value="NUCLEOLAR PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32337:SF2">
        <property type="entry name" value="NUCLEOLAR PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08157">
        <property type="entry name" value="NUC129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="U3 small nucleolar RNA-associated protein NOL7 C-terminal" evidence="3">
        <location>
            <begin position="155"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="115"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="14"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="31"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3984736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23125" checksum="A64008850920B888" modified="2020-12-02" version="1">MSSENINYDDSDSENINLATVGTTGSTSTEADSDNLQSDDSDAPVGVSWKDSKAVFQQDEKKRNDAVNFARSVDKAKRRKKNEMFVSQKEAKRKLAKLPEDIVQAVAKKPKLVEVDKIEKENKKLERRKARKKSNEESKTEEYCHVVILEEEVNKSKKVQESAAEFLKNHLYGNRLQRTSGSKQLTMQSKSSGVIKPAVKFSNKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DW20</accession>
    <name>A0A7D9DW20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073805</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002715">
        <property type="protein sequence ID" value="CAB3995716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DW20"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="27757" checksum="81F82F445CA69F9B" modified="2020-12-02" version="1">MTDLTTISDLTLTEGEVRYVLRNLDEEKATGPDKIPAVLLKNCAASIAPSLCELFNKSLSSGQLPSEWKLSNVCPIPKESPLHEVSNYRPISLLSLVSKVFERCIYNRLIDHISSKLNELQYGFQRGKFTTSQLLHVLHNIHKMLEKRCQVDTIYLDFAKAFDKVSHDLLLVKLHNFGIKGNLLRWFKNYLSGRFQRVTVHGVTSQPLPVLSGVPQGSILGPILFLIYVNDLPDSVSQGILPCQCLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E6B9</accession>
    <name>A0A7D9E6B9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">High mobility group 20A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A039755</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003658">
        <property type="protein sequence ID" value="CAB3999733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E6B9"/>
    <dbReference type="OrthoDB" id="3213154at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd21980">
        <property type="entry name" value="HMG-box_HMG20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051965">
        <property type="entry name" value="ChromReg_NeuronalGeneExpr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003604">
        <property type="entry name" value="Matrin/U1-like-C_Znf_C2H2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022755">
        <property type="entry name" value="Znf_C2H2_jaz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46040">
        <property type="entry name" value="HIGH MOBILITY GROUP PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46040:SF3">
        <property type="entry name" value="HIGH MOBILITY GROUP PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12171">
        <property type="entry name" value="zf-C2H2_jaz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00886">
        <property type="entry name" value="HIGHMOBLTY12"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00451">
        <property type="entry name" value="ZnF_U1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="13"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="239"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="129"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="286"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="54"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3999733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="46177" checksum="6FA9F7E7B8C9CC72" modified="2020-12-02" version="1">MDNPPMEIDLVDEKQLSTAAPGTITNTTTNIVADPAIGADTHSGTGINSPPKPTSTTTTSSPTTKTNLMTSGKRKQKLLWRDENAPKPPLSAYLQFLSKNRDAVRSQNPGVAVNELTKVLGTMWSEMPLDKKQSYLDQAERDKKQYMTELEQYQKTDSYKSFVQEREKTLKVLKQEEKASPGSHLICIPCNKWFENAHNFREHVKSRKHQRNILEAQTRGKKSKKSTLTVRQDDHTVETVAQRKAPTQGIPASKSATQVNNFPDMSAVSEGDLNVPVFSDAFLHYNKSRESELRKLRKATTELEEQNAILSKHIDNLNTAIGKLEDEKTESAQDIETLEPFLKSFHEFVSRHFCKSGLSDADTQLTELNIREFLLKLHKIYSSSDNTTIAKLKKVLNELDYPNCLDNKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8M7</accession>
    <name>A0A7D9E8M7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004928">
        <property type="protein sequence ID" value="CAB4004529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E8M7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="79" mass="8692" checksum="E03D48DDAED983CB" modified="2020-12-02" version="1">MPSGSTLKRDRRHIRPSVESPNQGVGDSPTTSITATKSSFPNNTSVPASPPKVEETRNVPTPKLRRSTRVTKRPDRLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EMU3</accession>
    <name>A0A7D9EMU3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009978</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007633">
        <property type="protein sequence ID" value="CAB4012794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EMU3"/>
    <dbReference type="OrthoDB" id="5976382at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="26092" checksum="2B2B75A4A85BCD84" modified="2020-12-02" version="1">MGPKLENNLTAYRKKNSCETSLIKLVEDWKISLDNKTVVGVLTTDLSKAFDSLHPPLLLAKLKAYDLSEEALVMLRSYFTERKNRVRMRSGCRSQWRDSKRGCPQGSRLGPLLWNIFQNDFVYNVRNSNLAMYADDHQVYACGERTEDVERILNSEAIYMSEWYQDNLLKCNYDKFQVMSLGPRNKKKEINIEMIDANIATFNFNHKPIRDCYRRCIKVCETH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENZ8</accession>
    <name>A0A7D9ENZ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054712</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007316">
        <property type="protein sequence ID" value="CAB4011927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENZ8"/>
    <dbReference type="OrthoDB" id="5956108at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22437" checksum="6EF27D9D72DED887" modified="2020-12-02" version="1" fragment="single">HEVDSHSFHVECGSSEKDSFGYFKCRAKCGYVYSTKAARNRHERQKHPSFSPLIPPSAEPAKEATPPEDYVYNYHRGKLAYGLILFEFNDAVKEGDGDRLFDVYKMALLLYKVGGHYKYAYVVMLYLVKNHCTRLYLPRHAFIPPTMSKTGFCTSSTSKNSNKPYLFLGKLITQKVTKQKIHESRNFYLPFTGHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EQH7</accession>
    <name>A0A7D9EQH7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RING finger and CHY zinc finger domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A088707</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008877">
        <property type="protein sequence ID" value="CAB4015870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EQH7"/>
    <dbReference type="OrthoDB" id="411372at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008913">
        <property type="entry name" value="Znf_CHY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037274">
        <property type="entry name" value="Znf_CHY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017921">
        <property type="entry name" value="Znf_CTCHY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037275">
        <property type="entry name" value="Znf_CTCHY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21319">
        <property type="entry name" value="RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21319:SF53">
        <property type="entry name" value="RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05495">
        <property type="entry name" value="zf-CHY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161219">
        <property type="entry name" value="CHY zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161245">
        <property type="entry name" value="Zinc hairpin stack"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51266">
        <property type="entry name" value="ZF_CHY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51270">
        <property type="entry name" value="ZF_CTCHY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="215"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="277"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="79"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="219"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="283"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="513"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="513" mass="57324" checksum="31080C20C83E6D7A" modified="2020-12-02" version="1" fragment="single">ASVIHNDALINLNVLIYLSDRTSGNDILATDFYYHNTPSDVLQEQFIQAYISASNGSQNSQSPIGENWIASNSYSYQRAQKQRSKIERLEAENVKLKRISKTLSHEIKAKTTLSQLQITELREENNKLAITLANKDAEIQGTFLELSRLSVELTTVNQTRIHQKFKRFGHLPSAQWPSRLTARGHSTGSADQSRSTALGFQKQFQVSRANSRKIVDTAGISSSTQRATQRSVARNGPSSHSRRPHPLPSTSTLSGKETLISSTASQGIVVTDAAKREDAGVQASGSTVRGDQVNASRNSNPGSNGQKLSKFQPPDADEDDQWLCSHYKRRCYVKFECCNKFWPCHRCHNNQSTCGRRTLKARDTKQLKCAACGLEQPFAHYCSKRNAKFARYFCGLCKHLTGTDDNPYHCEKCGICRIHGDRSFHCDVCGVCLDVQLHGNHKCRAGSAHDECCICLEDAFTGCQILPCSHKVHKECATQMIRSGITRCPICRESFAHKLERRPHPSKKRPVKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ETP4</accession>
    <name>A0A7D9ETP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009870">
        <property type="protein sequence ID" value="CAB4018132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ETP4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="8815" checksum="37FBC5FD5974482A" modified="2020-12-02" version="1">MDLTIQEEKDLLDADDTGNLVPDSITSLLLNPQFITMMKESLLPSLVDGVKQSFSAHTETTNSEQATFTGNSAGSTSGDNHAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAE9</accession>
    <name>A0A7D9HAE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc finger OZF-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A030154</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000063">
        <property type="protein sequence ID" value="CAB3977682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAE9"/>
    <dbReference type="OrthoDB" id="3069995at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24379:SF121">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24379">
        <property type="entry name" value="KRAB AND ZINC FINGER DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="14"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="22"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="137"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="285"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="586"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="653"/>
            <end position="729"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="149"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="290"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="321"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="594"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="604"/>
            <end position="618"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="627"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="663"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="708"/>
            <end position="728"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3977682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="992" mass="110613" checksum="4EB81B81C36E9BFB" modified="2020-12-02" version="1">MKGRRKNLHSIISKISGNVDSNVEADTQEAASTSVTGGSESISDDNAVPEMKIADEQLQRPVTRMYAKEGEDHLRQDAAIRRINTQLLDPAASPPFICDLCSVAFLTKRELQLHVMCHGIHIAGNVSGEKVQAVMQQSGEASAMGAVQSSEGSTTSETTNGQPDPEPVVVNSEVKIVDVLSLATATRGFKAPGSIWCSLCKCTVDKGHTCKVYQTSYHAEKTEEGFTCELCGRFYNQKRKLRTHLRNRHKGFRLQEDEGYMCWQCWQAFPEIKILEEHIVQVHGHESRRQNSTWRPFTQPSTLPLDENTDEDVSPDPNGSPVESSPNAEQLSSALKRINEEAPASSHPKRPRMDVTNGIISVAEVNGKVVVTDTTIRTDSPTHPQVTVGMSGMSEPRDIEPRDIPMTAVVVGNPNVIDGSDITNHTMDITNHTMANLTTNTAVPSAENSKKKTSGHLKQQCPHCPEKYGKKYMLQLHIEEAHGENMHCFFCSTSCATKEVLASHIKSIHTEEVKNGKCPICQCKCLGELHQHIVQYHHKDLLTRKAKERVLSTCPICHAATTDAYHLRWHILREHRGLQLPKEIQDGLNEDTGSESGSSVSNEGQDRVADGTKVHDTTSESNGGHKSTTEDQENSKENDLEIVFVSDKNISSDWSKRTANGVPPTSQASKPTANSVPPSSVTNDSTSGQCIKKPADSSVGMSPKVDQRMNTQGEVHSTTGQVEQTNERGSPVKYDYHSISEDTCVFCFKTLTKETLSSHLRTDHGWVDTFTCPVCPAKAEKYLNIVEHFCQSHFHPTDEVSMTQCDAKCLKCDIIFQDISHLKKHASALHSFQLPSEASYNTFKCRHCNIIFEKQFDAQKHFDVYHLFRIRFKCESCRMGFTAKHDFQEHVTCNHPELVKSFCPVCGLGFEVSSDLEEHVFEMHRRKAQFCCAQCGNEFGDRFHVHMHIRSNCCVTWADSNFECLDCLTAFSSISELRIHCKQRSCKQDAKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HGA0</accession>
    <name>A0A7D9HGA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047007</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000346">
        <property type="protein sequence ID" value="CAB3981027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HGA0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035437">
        <property type="entry name" value="SNase_OB-fold_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="297" mass="33338" checksum="6E8502F977D6A520" modified="2020-12-02" version="1">MKAINIKSKFAGLSSSSLENAYHFAQSAAPMTPPTLSTAAPTAVMGSTTKYMSPYLHNRRLDDPLPKCWKANEPRPPDGRMVKVDKNCVHFYDGDSCDIFMTDKSHQRLLTLAEPKRKILVRTLGNNAPGMACAVRFYKQAESSTKMHAVLTRHIGVESLRAVHQMVFESKQIYLECDTADDGMPFMPYDRYQRALVNIWLENNQGVLENLAVKLASAGYTMLFYVKGISQRIEAAMREAIKHKVGTKKFSFAPFVRGIYASAGLIWALAQSTTKPSHKLPTPHNTTNTIFRPYRFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HHS1</accession>
    <name>A0A7D9HHS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Fibrillin-2 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A079258</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000875">
        <property type="protein sequence ID" value="CAB3985460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HHS1"/>
    <dbReference type="OrthoDB" id="10006996at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1240.10">
        <property type="entry name" value="GPCR, family 2, extracellular hormone receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.960">
        <property type="entry name" value="SEA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036445">
        <property type="entry name" value="GPCR_2_extracell_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001879">
        <property type="entry name" value="GPCR_2_extracellular_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000082">
        <property type="entry name" value="SEA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036364">
        <property type="entry name" value="SEA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10075">
        <property type="entry name" value="BASIGIN RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10075:SF14">
        <property type="entry name" value="CELL ADHESION MOLECULE DSCAM2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01390">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00008">
        <property type="entry name" value="HormR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82671">
        <property type="entry name" value="SEA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50227">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50024">
        <property type="entry name" value="SEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3985460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="686" mass="76168" checksum="B9EEFFF3A965EB85" modified="2020-12-02" version="1">MIRLLYILHSEEELLSSSSEIDKCMLNLHNCNDEATCINAAKSYSCVCNTGWTGDGFNCDDINECTNLNICLENSRCVNNPGSYVCNCDIGYIGSSRCTRLPDTFLSVTFTLKDRKFTNSLNDPTSDNYQTLSRQVTNNFQKEFSNVPAYRGVNIIRFRSGSVICDAELVLVLNAKDEITKVLERVNATGVLGNISVVAESLTTADIPAFADIEMDVEYSGYAGDMLEITCTITGPSLLSFEWRKNNMILSLSTRVKIENNDQVSKLFVRKTAKSDSGNYYCIASKGEDTINSNVSVEVKVIPIVAVSPLSVAATEGDPVTLMCETSVGDEENLEIVWHNSKQSGIIGQTRKLNLFDIAPSDIKPRYTAEYWCFAKNSDGTGRSQNVTVHITSQDYNEFCFEDNDSGYTWEETPVDTSVIKTCPEGKIGTVTRFCNSNDGPPVWGDVSFFNCRSSVVIDLVDKVSRLVEGFESENISDILDETEQVLEDDKLYVKDIQDIVYVLENTKQRTKTQNNRQQFIRSSSNIVSQKRKNVWMNIPSRNNLAKQVISGTDLNARNYISQSAEIGKVALYRTPNIDVIGIRLPTVKPTELQAKGTSLLDTAGEGVVIPDALTNELKEATVVKYSSIKDILSEEELKESVDNTIESTESLTIRSTIVSLITKPGFNESVSKPFKIVLQNNQLDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKB0</accession>
    <name>A0A7D9HKB0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Neurofilament medium polypeptide</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035362</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001103">
        <property type="protein sequence ID" value="CAB3986999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKB0"/>
    <dbReference type="OrthoDB" id="5973784at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="324"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="793"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="164"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="187"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="327"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="347"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="368"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="810"/>
            <end position="822"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="885" mass="100967" checksum="214B79CB6FEE1B70" modified="2020-12-02" version="1">MWSSDSSDGDSVNQVSALTNGQLRQMLDDIKPTLIGIMEGTVKSAKHDWFLSRRNRKDMTFNCGMGRFVTWQHEFISSYLMKRLVKKQISSAVDYIILVMFPEALARIYMAVNDVSFDKASKALFKKNVKEDLEEEPKVIHFSPRKAILVKGSGRGTKPTVEVIEVEDDEVPQDEEVPGEKPVNTSEDADEEDEDFELPPEEEEEEQEGEADIQDEEGNDDDHSETMFPKPLKNKRRLKPCPICGRSFKVLLSHLKVKHKLGAQEAKRLSGQKRLVQLGTTQKTPPVPCPQPGCRNVVVRVDRHLVRVHGMEKTDTEYIRMNNEAKAKRHSAASKKAAKLLKRKSPMKMDDLPLKGEAEDTEVSLSSSEEEDEEEEEQEMDEISAPKIIQRNSINGKVDNIPALSQFYKYLYSMDGGARPVKASKENKRRVGRLLFEITSRMEDVRLLWDDCSLRKLRSTFFEGNHLLPEKQRRQPHTLRAYITALRLFYDFVVAMRVRLGKTCNVIISQDDLENIQSARQLTAGWLKSLASSVSIRKQELHKQDLDQHISSEDFARIANQPTNKKLESDMLALSKRQLTFISRDRFAEFRDNLMLKLLCRSAQRPGALANLTVEEFKNGIWDREQEPPLFITETQIHKTSSTEGSAAIFWNGTNYELGQVYLKKLMPLIQNPVLSVLPHITGVAKERHAFFVNYSGKFMTGRQITRRIRDVTKKTCPDLAVKFHGSRIRKHIVTEHRESMTPDVSAADLASQMSHNVKTASAYYHVDEIVKKKARVGRYLEQKLKLFGDQPSASTAWEKDEDSTTTHSQTKKHKPNPKGRKVFNSIQSKVVEEATLQLKDNASKGEILQVLGKDKSAKEHGLISGGHFSDQQLRDKFRSLRRNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTE6</accession>
    <name>A0A7D9HTE6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001604">
        <property type="protein sequence ID" value="CAB3990118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTE6"/>
    <dbReference type="OrthoDB" id="445357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.720.30">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003034">
        <property type="entry name" value="SAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036361">
        <property type="entry name" value="SAP_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35558:SF1">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35558">
        <property type="entry name" value="SGNH_HYDRO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02037">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00513">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68906">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50800">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="55"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="691" mass="77622" checksum="2E80A66904F0A197" modified="2020-12-02" version="1" fragment="single">MPPIRNQEYSLSDLRRKCAEKGLSTKGRKATLVSRLQQYASSGPSTTSQPLDNATPSASTSQTSTPVPTGESVHTPSLLNDAQMTQVRSIVSRSIEESITEIASQAAHAAVNALQCSATSPNESSPATLKDRVADHHATLTSSTRSPNPVPAAVPTVVIPDFPPHVPENESFVPTQMPSYGHPALDVPAAYVKQIQTGEFFDLAKLLPREFPSIVEEDSVVLTLENSIIKAKKANQQTQKITNIEQWTTAFTVYMGILTSKFPSRSQELLQYMSLIRYASQTHRGLGWCIYDHKFRRKAALNASLNWSQIDQQLWLCLFTIPPDILRREYPLFTNGPQQNTILSGAARRGNTCHEYNKRDDFLVIEPKSELFSPESPCQQSLAAMLLTFNNLNIPIAPSKTQGPLQVLDFMGITLDTLRMEARLPTEKVERLKELFGQFENRRSCTLKQLQSLIGTLNFACKVVPPAPTVHTIGTSCRSQPMLHPHFSANNLKKDIEKYINLAVAPSTKQTYSSGEKRFVEFILLVKRTQVEHCLPATESMLTEFVVYLARTIKHSSIKNYLAAVRHYHIRQGFKLNFQKMTRLQLVLRGIKRAQGGQIRIRLPITIHHLQLFHLLLSIPSTKNYDSLMFWAAMTLAFFGFLRLGELTCNSKFNTDTHLTPDNISFNFIQETQKPKSMTILIKESKTDPFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I2D6</accession>
    <name>A0A7D9I2D6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000023</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002936">
        <property type="protein sequence ID" value="CAB3996746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I2D6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11311" checksum="0B3CA44B293B09DA" modified="2020-12-02" version="1" fragment="single">MEENSMDGQPSRRKLCAFQACTLKVLNKDGDFAKIHDRPVDVVVWSENGTQCSIDIRDGDESILSFSVTHETGHYHAGERFYIFNLKDFSPLICFPKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I900</accession>
    <name>A0A7D9I900_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005999</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003846">
        <property type="protein sequence ID" value="CAB4000476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I900"/>
    <dbReference type="OrthoDB" id="8906575at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="471" mass="54752" checksum="2EC9B4C3431D6217" modified="2020-12-02" version="1">MLSLVGKLKNKDFIDHINNIDLIFLTETWFNSNIDVPDFRSFVSDTAKPHTNWACCKSGGITLLTRTKFEKFTSIVKKSKNFLWCKISKDVLNAKNYLFVCGVYIPPEKSVYFENEIFDELENDIIQFSSKGNIMILGDFNARTNTLEDFISKDGNNFINDTSENCLQPKNRLNFDHQINNHGKQLINLCINCNMNILNGRTKGDSFGRATFHGNNGISVVDYIICDQELFRNTNYFVVKPPTYLSDHSQIVTWVGIGQTNEKPDTNPGCNIEMTKLPNQYIWDNHSKNNFRESLRSQEMQKKLNEFMNSDFTNDLNGANQCVTEFQNILLETSKKSLKIKKCKRRRKISNIAQKKWFDKDCRIKRHDLRKLSNLKHIDPTNVELRKNYRDALKSYKATLQLKQNESKSIIYRSPTFTCKSQCNLPANSMPCARNNRREPFNTFAFARRNPIEQCLYIAPHCNQQNFDYFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IB43</accession>
    <name>A0A7D9IB43_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Zinc finger Gfi-1b-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A079471</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the krueppel C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005162">
        <property type="protein sequence ID" value="CAB4005323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IB43"/>
    <dbReference type="OrthoDB" id="6155966at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:002737">
        <property type="entry name" value="AGAP008430-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000446">
        <property type="entry name" value="Zinc finger protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000245">
        <property type="entry name" value="zinc finger protein Gfi-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000208">
        <property type="entry name" value="zinc finger protein Gfi-1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000432">
        <property type="entry name" value="zinc finger protein Gfi-1b isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050717">
        <property type="entry name" value="C2H2-ZF_Transcription_Reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14196">
        <property type="entry name" value="ODD-SKIPPED - RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14196:SF12">
        <property type="entry name" value="ZINC FINGER PROTEIN 208-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <keyword evidence="7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4005323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="386" mass="44691" checksum="5288DCAF07CC694A" modified="2020-12-02" version="1" fragment="single">EGNVWVCGVREYANSSRRREYCPCKVQGIIRRTVHHDSKNGQYPNNTKSIAHRIHTSLRFASYTAQPLYITIRSCRRLAIKLNVSCTAIHNGLHVGLLFTCFPSVEEQFRTESKRLRPTQSMILYTVYSTEHSTKYRLSDTSGSLRPNYPPNDGNLHLQDFLPPFPFPVNRWPNTRGPHLLDYFTKKPPFRSMPEIREAAKFPIKTKITENSAYECVKCNKGFATPHGLEVHVRRTHSGRRPYECQVCGKTFGHSVSLEQHVSVHTNEKLFSCKQCNKTFKRSSTLSTHMLIHSDTRPFPCEYCGKRFHQKSDMKKHTYIHTGEKPHVCQECGKAFSQSSNLITHSRKHTGHKPFICTICSRAFYRKVDLRRHAFTHENIKRSKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDT6</accession>
    <name>A0A7D9IDT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019856</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004712">
        <property type="protein sequence ID" value="CAB4003740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDT6"/>
    <dbReference type="OrthoDB" id="10535188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20785" checksum="70E9B243431EB806" modified="2020-12-02" version="1" fragment="single">FYEIKFILYELRPSTAADKTNMETFRTKCRTPKYLDTDKYSHDNCSMKLKVSNTISILVMTYLYINIPDEHEDIREPEEQNGQSSSISEDDILQPRQTHLNPDIVKVAHAIANYLKDQPNHKAYSSEACKAIYKQLPEAREIIARLGQLRGIVTKCPYLSLEGGATGGTYCIKLDMNIFSQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGY2</accession>
    <name>A0A7D9IGY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043802</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005230">
        <property type="protein sequence ID" value="CAB4005538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IGY2"/>
    <dbReference type="OrthoDB" id="10065844at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13739" checksum="F99AF6EB1D1B6CC2" modified="2020-12-02" version="1">MAAEKYQITKELTEKKVRINNQSRLRLPEPGVFSGDHLKYPVWAKAFETLIESPAISSAEKPHYLEKYVSGEAKAIVEGFMLLVGNDTCERAKKQLSKRFGSYLFYDFITELDTNPFCLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IMF1</accession>
    <name>A0A7D9IMF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048636</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006415">
        <property type="protein sequence ID" value="CAB4009322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IMF1"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="636"/>
            <end position="703"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="639"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="678"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="694"/>
            <end position="703"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="703" mass="80617" checksum="7C413945D2A9894F" modified="2020-12-02" version="1">MDGVRTVADDILVIGNGEKMQEAVADHDRKLKELFDRCRAKYIKLNPNKIDLKKTSMPYIGHILTSDGVQADPAKVQAILEMKQPTDVAGVRRILGTVNYLAKFLPHLSQVPEPLRQLTKKNQPFDWDKSHDAAFTQIKKLITEPPVLKYYESTKPLIIQCDASDHGLGAALIQEGKPVAFASRALTHAEKQYAQIEKELLASVYWTERFHQYTYGRPVTVESDHKPLEVIHQKPLSAAPRRFQKMMMRLHQYDLTIVYKKGSEMLLADTLSRHHLDNSTDEARSVDSDLDQVDSLEEINEILNCETTTIFQDHTTKDQDLQQVKSFIQSGWPESSKDLSPTIIPYFHLRDELTTQEGLVFRGDRVVIPKSLRKQQPKEPLIPHEIPKRAWAKIGCDIFEFEKKLYLVTVDYYSNFFEVDRLEKLTSLAVIKKLKPHFARFGIPNTLVTDNGPQFMSDDFRDFSMKYQFEHITTSPYHHQSNGKAESAVKQAKRIIRTCKSSNDDIYLALLAHRNTLQTTHETSPAQRLFNRRTKTPLPVSEKLLQPKINSQANKRIQQRQQLQKKYHDRGVKELSPLRKGEVVRLQPTRIGEKKWRRGIVVRKAGIRSYEVQCKGYTYTGNRKFIRRSKLPAELGSDNADEEISDMSEAEENASVPTDNDQPQEDPQPAHLERNETSTETSSTSKTRSGRLVKNPDRLGIDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPW4</accession>
    <name>A0A7D9IPW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Potassium voltage-gated channel subfamily A member 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A027260</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007669">
        <property type="protein sequence ID" value="CAB4012877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPW4"/>
    <dbReference type="OrthoDB" id="415460at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005251">
        <property type="term" value="F:delayed rectifier potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001508">
        <property type="term" value="P:action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000002">
        <property type="entry name" value="Potassium voltage-gated channel subfamily a member"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000091">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003968">
        <property type="entry name" value="K_chnl_volt-dep_Kv"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003972">
        <property type="entry name" value="K_chnl_volt-dep_Kv1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537:SF113">
        <property type="entry name" value="POTASSIUM VOLTAGE-GATED CHANNEL PROTEIN SHAKER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="VOLTAGE-GATED POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00169">
        <property type="entry name" value="KCHANNEL"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01491">
        <property type="entry name" value="KVCHANNEL"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01496">
        <property type="entry name" value="SHAKERCHANEL"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0407">Ion channel</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0630">Potassium</keyword>
    <keyword evidence="5" id="KW-0631">Potassium channel</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="155"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="213"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="283"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="315"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="344"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="387"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="428"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4012877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="456" mass="51314" checksum="AA5EDF90B9E429CE" modified="2020-12-02" version="1">MAGEGDGSVAEKYVSCPTSLANYSMIRINVSGKSYQTYESTLERFPDTLLGSPDSRGRFYDASKGEYFFDRHRSCFTSILYYYQSEGTLIRPINLSPDVFLQECSFFGLGEEAQKILGFGDFEAEDPEDELPENKYQRMVWEAFESPTSSVVARLLAVVSLSIILISIVVFCIESLPSLKDMKVWFVISAVCNAWFTVEYIIRLACAKNKLTFLKGTLNIIDILSILPFYIDLIMKSVNATGGALEVLRVLRVVRVVRIFKLTRHSRGLYILGHTLKSSRSELFMLLLFMIMGVILFASGVYYCENTENTEQFPSIPHSFWWAIVTMTTVGYGDVSPKTNPGKVIGAMCALSGVLAIALPVPVIVSNFEYYYKEELARQIAEQSRQERRAREENANHISLQIPPPLSSSISNIDQEILELKGVKPAHSRQDLGNHYSKLSPKTTPSTPRRRVETVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRC4</accession>
    <name>A0A7D9IRC4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Small ribosomal subunit protein mS40</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">28S ribosomal protein S18-2, mitochondrial</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">28S ribosomal protein S18b, mitochondrial</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A063082</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial ribosomal protein bS18 family. Mitochondrion-specific ribosomal protein mS40 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008081">
        <property type="protein sequence ID" value="CAB4013938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRC4"/>
    <dbReference type="OrthoDB" id="5959928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032543">
        <property type="term" value="P:mitochondrial translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.640.10">
        <property type="entry name" value="Ribosomal protein S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040054">
        <property type="entry name" value="MRPS18B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001648">
        <property type="entry name" value="Ribosomal_bS18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036870">
        <property type="entry name" value="Ribosomal_bS18_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13329">
        <property type="entry name" value="MITOCHONDRIAL RIBOSOMAL PROTEIN S18B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13329:SF2">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN MS40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01084">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46911">
        <property type="entry name" value="Ribosomal protein S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0809">Transit peptide</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00035130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00035515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4013938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34381" checksum="DB1A8DE727B29694" modified="2020-12-02" version="1">MAANLRHVFAHCSFSRQFSKYFLYKCIETHSRNARGRLFSMLAMRRGASLAQNTSFNTSNFVVGSRFFHVGCVRAVESSGHDDPEFVTEEFSLRSENVKDIRGMMKHIKDKTGVIMKAIDGKDGENKLKILIGGTRHEVQQAMFYLKSSVDQDSSTQRLILLQDEKVEQQYSSRKEKPIWAYYRRNFKGQKPPMKTRKKCIRGKGESQIVSGNPCPICRLYLAGEYKLDHKDVDLLSQFISPHTGEVFEASKTGVCRYQQENLVTAIQTAKDYGLLPYSIPGPRSIAKPAKRAEIPVNVRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWW6</accession>
    <name>A0A7D9IWW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017844</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009915">
        <property type="protein sequence ID" value="CAB4018235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWW6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="11218" checksum="63D31570C6A2DD75" modified="2020-12-02" version="1" fragment="single">METFKPPSVLNLTGNLRENWRRWIQRFELFLTASVVFDRRCVINENPWQIYTNQVKLSLPIIGPFQSNGMRIPKFKKICISLPEFEEERHLLPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBV3</accession>
    <name>A0A7D9JBV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Coatomer subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A089237</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014011">
        <property type="protein sequence ID" value="CAB4026099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBV3"/>
    <dbReference type="OrthoDB" id="10261470at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.470:FF:000002">
        <property type="entry name" value="Coatomer subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056176">
        <property type="entry name" value="TPR_COPA_B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23953">
        <property type="entry name" value="TPR_COPA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="9" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0653">Protein transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <keyword evidence="5" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="COPA/B TPR" evidence="11">
        <location>
            <begin position="11"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF23953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4026099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="211" mass="23526" checksum="8AA3829B18F9D5C0" modified="2020-12-02" version="1" fragment="single">MVRNAKLVGQSIIAYLQQKGYPEVALHFVKDERTRFGLALECGNIDAALEAARALDDKACWEKLGAVALRQGNHQIVEMAYQRTKNFERLSFLYLITGNVEKLRKMMKISEIRKDVSGQYHNALYAGDVEERVKLLKSLGQGSLAYLTAATHGLEEESENIKAEFNLDSDKIPAVNPNARLLRPAVPVLPNEVNWPLLTVSKSVFEGAVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JJ66</accession>
    <name>A0A7D9JJ66_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HECT-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="3">2.3.2.26</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A059717</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.26"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.26" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020016759">
        <property type="protein sequence ID" value="CAB4030287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JJ66"/>
    <dbReference type="OrthoDB" id="5988852at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050409">
        <property type="entry name" value="E3_ubiq-protein_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11254:SF440">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE NEDD-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11254">
        <property type="entry name" value="HECT DOMAIN UBIQUITIN-PROTEIN LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 6" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="HECT" evidence="7">
        <location>
            <begin position="328"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="domain" description="HECT" evidence="7">
        <location>
            <begin position="413"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="active site" description="Glycyl thioester intermediate" evidence="6">
        <location>
            <position position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4030287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="491" mass="55374" checksum="3AAD3C511E388AE7" modified="2020-12-02" version="1">MDDVNDRLRYLSRHLTEANNIISTFMEQPVTSTTSAPSTATTTTSSATTVGSVLSRARAMISQSVSNGACSRLGRRERLRATSSPRQQNPPKKQKKDEQKVFEFVIVDVRESEGNSSWSFSEDIVLLRGIIQISNSSGEREMREQIGLATRMKYSILNNEDFAFLRATRRVLAKPVNSGAYDFKQVKLLAGQGSIYLKLKDHIYCLLQEGRDDDDDNMVQIRGICDERQHEPTSTEASSEIVDTPCSIVNIDGHDDAKVDDLATKIVGYCTSHNIEDPIEILRYFQKIMVEGRGLGIQDVSWVEEGETSLIMVDRYNILETSFEEVKSLENVRKTLEVQFYGETAQDLGGPRKEFFSIVVLEIYNKYFKNGLKEHMSEDYYTAGIILGLSILQNGKIPYFLDGERIGISSNNILRFATCDDEIPLLGYERGAKPSVTFYEVPENKSFIPTANTCSCKLQLPRPTIEVGLPDDDTLFDFYDMAFVSEYFGHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRC2</accession>
    <name>A0A7D9JRC2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transcription factor AP-2 C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A040517</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020647">
        <property type="protein sequence ID" value="CAB4035042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRC2"/>
    <dbReference type="OrthoDB" id="10475557at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013854">
        <property type="entry name" value="TF_AP2_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03299">
        <property type="entry name" value="TF_AP-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription factor AP-2 C-terminal" evidence="2">
        <location>
            <begin position="156"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="90"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="34255" checksum="6D6E48673B67F710" modified="2020-12-02" version="1">MIPTIPGRPEIPPTSPTVPALTAATSVRPIQNSVIQSSTAGVVTSAGHVVQYPGVVMSSGIENPRLKVVPPNVTVVPQCPRGRSPKEVKSPVVKSPGVKTPPLIRSPGGTQAILPVPVSQGDAAKNSPRENGAKSSEARNETKASNATASPSNLVSIMKTSLRQKHSKENVQPLPTMFKNKRKLEADKGDGPPAKKNGKPTIFTPLNEQEAEKLANDIYDVNLEYFPFQTLAGKAAQSEEALSETPDRPEKTDKVKEIEKVRCLLKDFYDVTSSCAEDPDMQKFDSASRKFGRKNILNHLSLLDRYFAELQKKLDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JT23</accession>
    <name>A0A7D9JT23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020373">
        <property type="protein sequence ID" value="CAB4034736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JT23"/>
    <dbReference type="OrthoDB" id="5949087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="516" mass="59281" checksum="A767D6BC8110151B" modified="2020-12-02" version="1">MAVLTEESLDINQDVEEGTNEFNVEEELPSFFLTVLDRAEYLICNDSRNVSGIQTLLVVLDQTISLLRLILEDVDEDDQQQWELLAGCFETIAQNLQQHTLELSLRPTNVTLLRCDISQTGRPGRPSFLIQPEMLEDLLELGFSKQRIARLLGVSRWTIHRRVLEYGLYHVSAFSDLSDTEIDEKIRDYINRHGRTTGQVFLLGYLRSIGIHVPRRRIRASITRVDPANVALRWGAAVYRRHYQVPWANSLWHLDGHHSLIRWSLVVHGCIDGFSRRIIFLHSSANNLASTVLNLFLSAIERDGGVWPSRIRVDHGVENVLVCEAMVENRGEGRGSFIAGPSTHNQRIERLWRDVFRCVCHYYYYIFYAMEDSGILDTSNSLHMFALHLVFLPRINLALHEYLEAFNHHKIRTARNWSPYQMWVNNMMNPDNPLSSGQHDNVPENVEFYGYDPHGPSPFEDSNNNVVVQPVNIANGNEIQAQILQVIDPLMPSVQMGIDIYEEVLSLLVNYAHTEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JU14</accession>
    <name>A0A7D9JU14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A048382</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021054">
        <property type="protein sequence ID" value="CAB4035438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JU14"/>
    <dbReference type="OrthoDB" id="10072335at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="167"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="25"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="43"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="211" mass="24134" checksum="23071637F34909A3" modified="2020-12-02" version="1">MSSLTKMKKENLDIPQVKVNDKHGSFSSLASSDRSCSPSASPRHGRKILGFKKMIPWKRKDHETDQEGDEMKEEENGRKQKISMESLAQKPVYAGRKNRSRSVDHLLSNKSHSTNFEISPQSIHSMAVHGDIEARFHSPARSSVTDEDSGDGESLFLFIQGIDNYDVTDVMDNTERLNEERQKLRRKIEKTKERIRNLQCSRDGPLSCFRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K1W8</accession>
    <name>A0A7D9K1W8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025607">
        <property type="protein sequence ID" value="CAB4039589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K1W8"/>
    <dbReference type="OrthoDB" id="4405280at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13702" checksum="C1595DBB4B61098E" modified="2020-12-02" version="1" fragment="single">YLVIVRTDSGSNIERYNVETEVVDAIKAGGDFPQDVSVDADNGVVYWVNVIGGSTFKVKSTSYAGVTIDLNITYTERIEIAQDEVYLYVLVVSNETIYKYRKNTWEQMGSIVVPSGTSGVEVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KB23</accession>
    <name>A0A7D9KB23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087678</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031416">
        <property type="protein sequence ID" value="CAB4043057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KB23"/>
    <dbReference type="OrthoDB" id="5983986at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="214"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="26815" checksum="B49EB517AEB7E11E" modified="2020-12-02" version="1">MDVVSPITLEGKIIFRDVCKTKVPWDADIQEPLSRRWNEWEKSLPNEETIPRPIVKYREPVLNVELHTFGDASTKGVGAVVYSVVRQKSGNTQQLVTAKSRLAKEGLTINLCGGTVQNGWTIQRNGQTTLKRNHPQLLKLKPKWFERFQATAVVKPPPGMLPKELYEGKDGLVRAIKLRAGKSVMERPVQHLYPLELSCDIENRQTTKTTTELNAEATEFRPKRRSGCSEASQPDDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L624</accession>
    <name>A0A7D9L624_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Palmitoyltransferase</fullName>
            <ecNumber evidence="7">2.3.1.225</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A016788</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-cysteinyl-[protein] + hexadecanoyl-CoA = S-hexadecanoyl-L-cysteinyl-[protein] + CoA</text>
            <dbReference type="Rhea" id="RHEA:36683"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11032"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57379"/>
            <dbReference type="ChEBI" id="CHEBI:74151"/>
            <dbReference type="EC" id="2.3.1.225"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The DHHC domain is required for palmitoyltransferase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the DHHC palmitoyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.225" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020013928">
        <property type="protein sequence ID" value="CAB4025977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L624"/>
    <dbReference type="OrthoDB" id="163438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019706">
        <property type="term" value="F:protein-cysteine S-palmitoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001594">
        <property type="entry name" value="Palmitoyltrfase_DHHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24161">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24161:SF17">
        <property type="entry name" value="PALMITOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01529">
        <property type="entry name" value="DHHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50216">
        <property type="entry name" value="DHHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="242"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="271"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU079119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4025977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="369" mass="41940" checksum="7F1C3D8862E1A1AA" modified="2020-12-02" version="1" fragment="single">MISRRDVRMCQLLIAAKGKEILKDHDISGHTALHWACLGGYTKIVELMIENEAPLNAPSENDYGPRPIHWACTEGYIVIVDLLLQHGVPIDTTDKKQCTPLIIAAQYGKSNVSSYLIGKGADIHAVDDEGDSALHWAAFKGHSDLVQLFLYSGFNPEQKDKMGQAPIHLACLSGNLLAVQHLFVMDVSISERDNNQKTPLMLAMGRQNEDIVTYLYRKQSRYIKFTLRDIVFGPPGRSKGPFLFVLINIIFVGYPIYYYMVIPETYSEMPYVHYLFLFLNVVMWMSLYTASTTDPGFLPGDTEEYKLTLKQVALHDDWKDKTGSPLNRLCHTCRLVKPLRSKHCRICNRCVRTFDHHCPYVNNCIGLHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFC7</accession>
    <name>A0A7D9LFC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026531</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018580">
        <property type="protein sequence ID" value="CAB4032654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFC7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13264" checksum="705E7DEF603ED781" modified="2020-12-02" version="1" fragment="single">SEVEEKLFRERTGHRSNALLAYEKESSEQNRKVTKILGPPEVIVHDVIELEDDIPQLNSLRNSDSDLFDFDVPDEIVEILATMGLPGNNEITETSTSSATGSGATLSGGVFNNCSVYFGKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJ22</accession>
    <name>A0A7D9LJ22_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ubiquitinyl hydrolase 1</fullName>
            <ecNumber evidence="3">3.4.19.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A089394</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).</text>
            <dbReference type="EC" id="3.4.19.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase C19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.12" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020019580">
        <property type="protein sequence ID" value="CAB4033820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJ22"/>
    <dbReference type="OrthoDB" id="2248014at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02257">
        <property type="entry name" value="Peptidase_C19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050164">
        <property type="entry name" value="Peptidase_C19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001394">
        <property type="entry name" value="Peptidase_C19_UCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028889">
        <property type="entry name" value="USP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006:SF888">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00443">
        <property type="entry name" value="UCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50235">
        <property type="entry name" value="USP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0788">Thiol protease</keyword>
    <keyword evidence="5" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="USP" evidence="8">
        <location>
            <begin position="1"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4033820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="22356" checksum="435FD9C8DCD1D003" modified="2020-12-02" version="1" fragment="single">ASQKTWNSVLFDQDTMGIHDESIVLRSGVKASKVQRKLWSPFVGLFANQLSCKTCSYKYPVKFDSFDTVSLSLSSSFQFASVALQGLIRNFMCSEVLESFQCSGCGRKDGENHKTRLLKKLSIGKLPQCLCFHINRTYWQNNGVPYKNNTFVTFSESLNTEPYLYTHNKVDHKIPRMSGLCSSQDISTEEQRTTPHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LUS1</accession>
    <name>A0A7D9LUS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039892</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025485">
        <property type="protein sequence ID" value="CAB4039507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LUS1"/>
    <dbReference type="OrthoDB" id="5968066at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF1">
        <property type="entry name" value="TELOMERE LENGTH REGULATION PROTEIN TEL2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="585" mass="66259" checksum="D49345346A3C5E6B" modified="2020-12-02" version="1">MKQLQTTPRFKEIFERFTVYGNHVVRYSCHDRSGTWTDICIEQKLMKAAKSEGGLSRGRMRNSDSGHKCWVQTLNHFSDVNQRMEESVKKHGPLHKDLTKTRMKRDAEAIGLVLKWFEENNPFDHDRDNKLLVSFSTGFTSKEGDAVNAERAVEVGREMQIKLNGQSVTSTMELKFKVQALSPLRKLPKLNEKKIHLNSHKLFNRLIIIAQRDMTVETRSEYELTPFPLSLFSNQDQRMNKVNKAGFSKTSLKELIDPVDLTDHIRPDMIHLTPRAKFMDNLHNKSKLIHLLSSTFRNHQIIVGECNNDADTSIVRGALAAAKDDSVEVRAENADVLIMLLHHSSSTKYPLYLTTSNGSYDVKKIQEALSEKQRRYLLFCHAFTGCDTVSAIASHGKTTLFHMFCAGDIDEHMDIFLDVQAKKDAVIEAGIAIFQYIYHAPCTNLGAIRYDMFSRKAAAGLIKPEALPPTRGAAAQHSLRAYLQIQDWMLLKSMSLDPSDYGWTLGVHGYEPVPTLDPMAPDELLRFTSCNCNGDCSNRRCSCKKNGVKCISACGNCKGITCQNCIHDDVEPEKNSDLRHWIYVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZ90</accession>
    <name>A0A7D9LZ90_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067917</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027287">
        <property type="protein sequence ID" value="CAB4040814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZ90"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="636" mass="72757" checksum="F88B333A2BD4101B" modified="2020-12-02" version="1">MKKRNALHKLARQTLQALDWDRYRSCRNQIKRKLRESERKFVYKRINDKNSNINSLWKTVRECIPRNEKTRLTYSGNVVEVANKFNEYFSSVGAKAAEESKALITSYGLTSTHPEIPHKCSAEIDKFHFHRLCPSPGPDKVSVKVIKDVLPYILQPLTDIVNCSLRESLFPSAWKLSEVIPLLKEGDHEIAKNNRPISLLLAASKICERVVLEQFTAYVEQKKCLSVHQSGNRKLHSTETLNLFISDKILKSMDDKEVVAVILLDLSKAFDSIDHVLLLKKLQVLGVSDDALCWFKSYLTGRQQVVRIGSTVSETRTLNHGVPQGSILGPMLFNIYINDLPMVPKNGNLKSYVDDSKLLLSFSVNEVNSAAAKLNEDLRRVVSWCCLNSLLINPNKTKLLVFATRYMLKQIPADFHILLLGKKLFPVTSATDLGVTLDSGLTYDEHVTKLVSSCVGSLCQINRARHLFDMKTLILLINALVFSKLYYCSTIWSNSSKKNIAKLQKVQNFAARIVTGTKKFDHITPSLKQLNWLPVNYMLRFRDTVMAYKCVNGMVPSYLCRMFQTRSQLHNLNTRSSELLEIPLYRTATGQRTFRYRASCLWNSLPEWLKDHNLNLERFKSGLRSYLVQQFLDEQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M4Y1</accession>
    <name>A0A7D9M4Y1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029016">
        <property type="protein sequence ID" value="CAB4041843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M4Y1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18235" checksum="D94498DB2F071E0A" modified="2020-12-02" version="1" fragment="single">MLSISVACSFCGQDFVSPCRHSWRCKQRINHAEQDRPNITSREVPVMQSPNVPVPSRTVVKCCCGKICKGARGLKMHQHSCQVIYGLNGELSADLEEQITMDNTADTPENDNSINDIDMTNDESFPELKQDINLPKNDSGWQTANDYFKCALQLNDPIRMQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M611</accession>
    <name>A0A7D9M611_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Rab GDP dissociation inhibitor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062478</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Rab GDI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032477">
        <property type="protein sequence ID" value="CAB4043476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M611"/>
    <dbReference type="OrthoDB" id="9446342at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005093">
        <property type="term" value="F:Rab GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007264">
        <property type="term" value="P:small GTPase-mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.405.10:FF:000001">
        <property type="entry name" value="Rab GDP dissociation inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.519.10:FF:000005">
        <property type="entry name" value="Rab GDP dissociation inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.405.10">
        <property type="entry name" value="Guanine Nucleotide Dissociation Inhibitor, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.519.10">
        <property type="entry name" value="Guanine Nucleotide Dissociation Inhibitor, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018203">
        <property type="entry name" value="GDP_dissociation_inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000806">
        <property type="entry name" value="RabGDI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11787:SF8">
        <property type="entry name" value="RAB GDP DISSOCIATION INHIBITOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11787">
        <property type="entry name" value="RAB GDP-DISSOCIATION INHIBITOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00996">
        <property type="entry name" value="GDI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00892">
        <property type="entry name" value="RABGDI"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00891">
        <property type="entry name" value="RABGDIREP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0343">GTPase activation</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4043476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="395" mass="43673" checksum="4AD37FE7B7A01A52" modified="2020-12-02" version="1" fragment="single">MNGEYDAIILGTGLKECILSGLLALNGKKILHLDRREYYGGDSASVNLAKLYELAGKSENFTQIGRARDWNIDLIPKFILANGVLVKLLAYTGVANYMNFKLVEGSYVYKSGQLYKVPSNELEALDTSLMGFFQKRRFRTFLEFVSGFDFGNRETWGDVVPDSTTMAEVYDSFGLDQNTIDFTGHALALYLDDDYLHKPCAEAVKRINLYRDSIAKYGRSPYIYPVYGLGELPQGFSRLAALHGGVFMVNKPVDEVVMQDGVAVGITSAGEIAKAKCIVGDPSYFPERVSKIGKVVRCICVMSHAIAGTDESLSCQIILPQNQVNRKSDIYICLVSDTHKVAAKGKYLAMVSTTVETSNPEQELKPALDLLGEIDEKFVFVTDLYEPNDDGADSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M657</accession>
    <name>A0A7D9M657_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069325</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033463">
        <property type="protein sequence ID" value="CAB4043890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M657"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="14659" checksum="FFB8DA688C7977A1" modified="2020-12-02" version="1">MKKSELYSFNERRDKAKLKRTKKERDFWTIAEPKIDAWMFVTGQKRDVFNIESFVQQNREIVEGIGQVRKNVKVLILRSRCPLVKVLQEIERHERGEESEEQVEVPWQTYWTTFKSWRPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MBR5</accession>
    <name>A0A7D9MBR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078102</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033256">
        <property type="protein sequence ID" value="CAB4043818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MBR5"/>
    <dbReference type="OrthoDB" id="10513710at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="432" mass="48713" checksum="6C83BA5C6724A61C" modified="2020-12-02" version="1" fragment="single">MSDGTAGTPGRGDRQTGCSDSLPRAPGDADHASSNDNETISDAFENIQVDGTEPLAGIQFEGEYTTEHFELDDGIQQDNGDINEQSSDSDRNNNISSQGIKNLILRILESKVKNGWSQEETLKEIRNIYELLQDERIPHQSWLSVIHFLKNLGYKDPTTYKVCIKSNHVTLVEDENCPDCGTSKSTCTDYFVLGLQLEHYFLNESVILDHLKHWARKEEWMGEAQMKYKEIWHGERFKELSYFWDVNIEKVLPVCCPNCDSIISVGEMAAFVPPGSTLHDKVKLYMSCKDCLFDFVHIPKTMKGCPLNKAFIFHEDGFNAFERKSRGMSAIHVSSGCISKEKRSQGKYLRVYSFVPSVVLPEGVHHKLDAFLKPLIDEAKELYINGINVTIEQPPRLKTGVSIQPGNYQVRALLLLGTADIKGHQEMILYAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MJC2</accession>
    <name>A0A7D9MJC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072892</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043996">
        <property type="protein sequence ID" value="CAB4045973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MJC2"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23292" checksum="DAE0043DC0877893" modified="2020-12-02" version="1" fragment="single">MEIADGYSNNKFVFRCLADTGSERTLISEDLLLKHEFVINPAADPHLVAANNHPLKCNGRAHVTLASKGRKTIETAAIVCSDLKQEVILGRPILRRLHIIPKGFPNIIAKVMTFEEELKREFPETLSDKLPEIAMKGEAMKIHLCPDADIIPTRRLTARQVPLARQEAAEEVVEKLLRDKIIQRVDWPTDWISPGFFVPKADGKSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FGH5</accession>
    <name>A0A6S7FGH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014338</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000125">
        <property type="protein sequence ID" value="CAB3978555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FGH5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11852" checksum="6A2047C954391CD5" modified="2020-12-02" version="1">MGKFATQKRKKRQFCGNRHTKRSRVEYEGEGEPVMQENNEESEVSLSADKGNVGAIPAGISVSYKKLQPRVRQNSSEKRTPKPSTESSQGTYGFRLCDMVWIQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXW1</accession>
    <name>A0A6S7FXW1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038857</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000340">
        <property type="protein sequence ID" value="CAB3980952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXW1"/>
    <dbReference type="OrthoDB" id="5987805at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="154"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="204"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="238"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="271"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="305"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="764" mass="88416" checksum="06CFA4CCB3593862" modified="2020-12-02" version="1">MVSYHVYVPLLLRLANDVEENPGPINIYDIVDHSFTVRADFNQGNISMFGINAGKQCVAMSIYAIVYNEIKSVNIWDTPLMNMLLVNANNLYAIISQHIQKDFLLLTDVPEILSINNDTFNLEYSDSFSGALWMEYNNEPLDNTANDTTSNNHEQQRKQQESVVERENRLEKLREKQREKRQQESVVEWENRLAKQRERRKQAKQRETVSERENRLAKQRERRKQAKQQETVSERGNRLAKRGEKRRQAKQQETVSERENRLQNQRKARRLERQNETVEQREQRLAKVRANYKENKSRHSRKNKQSPPSGCQGLNNDNNISHNSVSQLIHKFHKSVSTGPLYICSCCDQLWYKHSVCPAERLRLSNPNATKHLQGIKSVDNIEWLCLTCDKHLKKGKVPPSAITNGMKFPTKPDFFDLNELECRLIAPRLAFQKIMQAPRGRQLKITGNVVNVPADICNTVNMLPRLPQDTATIKVQLKRRLQYKSSALSLNVRPNKVMQAAAWLVNTSELYQEQGITFDQHWLSYFDVTTPNSDNENITVDQTNLTSEDEWSEDEAEIPAGVTDSMLTPTDFVDDTERQHIYNVAPGEGSRPLSIFKDQYSEELAYPGIFLGQKRPDEKHRLTRVHYSEICKSELRRSDRRAAMCIENIFFKTKKMQMKLLLGQSQLAIRKCKMGNRTLTAGELKTPEGLTNLICHDEGYKFLRALRGSPPYFEKAKKDLFAMIRQLGPASLFCSFSSAETKWNHLLRILGKLVDHKDYSDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FY27</accession>
    <name>A0A6S7FY27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000719</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000748">
        <property type="protein sequence ID" value="CAB3984508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FY27"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="256"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="405"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="265"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="289"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="321"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="428"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="449"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="465"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="491"/>
            <end position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="514" mass="53273" checksum="B95506124516A6FD" modified="2020-12-02" version="1">MIGYNKNYVLPCDDTVEEFEVSVDVAAVGSTTVAGVGEISFDAKTNDVKYGNFLKVHQVCFFLVIVDWNITIRYNKNYVLPCDDTVEEFEVSVDVVAVGSTTVAGVGEISFGAKTNDVKYGKFLKVLQQVCFFLVIVYCFLVRQPLETSRRSKGGLELFCRISSMVSCIVFACRKITIRYNKNYVLPCDVTVEEFEVSVDVAAVGSTTVAGVGEISFRKISPKDIPPTPAADPTAPTSTQILTASNVTLHAPKNISPATAPVVDSTAATSTETSTASTVSSSQAPKDISPTPATVVDPTAATSTETSNSSTVTSQAPKDISPTPATVVDPTATTSTETSNSSTVSSQASKDISPTPATVVDPTAATSTETSNSSTVSSQAPKDISPTTATLVDPTAATLTQSLTASTVSSQAPKDISPTPATVVDPNAATSAETSNSSTVSSQAPKDISPTPATVVDPTAATSTETSNSLTVSSQDEKGISPIPAPVVDPTAATSTETSTASTVSSQGRTLFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0S5</accession>
    <name>A0A6S7G0S5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005659</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000216">
        <property type="protein sequence ID" value="CAB3979641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0S5"/>
    <dbReference type="OrthoDB" id="2130750at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.190">
        <property type="entry name" value="CAP Gly-rich-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036859">
        <property type="entry name" value="CAP-Gly_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000938">
        <property type="entry name" value="CAP-Gly_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18916">
        <property type="entry name" value="DYNACTIN 1-RELATED MICROTUBULE-BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01302">
        <property type="entry name" value="CAP_GLY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01052">
        <property type="entry name" value="CAP_GLY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74924">
        <property type="entry name" value="Cap-Gly domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50245">
        <property type="entry name" value="CAP_GLY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="25998" checksum="8D0E876D5403ED62" modified="2020-12-02" version="1">MVNFENLKIGSRVQTSKDGEIFQGTVRYKGGLITREGNWVGVELDKPVGYTSGLFKGYKYFQCNAKRGIFIRPRRLHLMGNWRTMSGNGYRTVSTKSYVDETLFAKKPEEPQNAEPLQYYDNKTFAFVTPEYMKSTNRAFSAPLTLHSHVDKKVNFHKKHMVGHNLSPATTKSNICNTGRSSRCSERMFVPSSPSIPDYHVPRRVFKRMVERDYFGTSLPKQNTLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2E3</accession>
    <name>A0A6S7G2E3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063567</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001120">
        <property type="protein sequence ID" value="CAB3987094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2E3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="15511" checksum="3683A7D846806B58" modified="2020-12-02" version="1">MLKSFTERTKKVDVSKYYCDSDLVIKGRFIVRNPWPFNHIKVFALDSFKEPFVQNKSYNVIYKNEDRHGCYHHYNFIKDYFYFATSYTTNKDVFTVTAAIADDGSREAAYLKAALPKYKNKDLLCQPPLPPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6Y5</accession>
    <name>A0A6S7G6Y5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">folate gamma-glutamyl hydrolase</fullName>
            <ecNumber evidence="7">3.4.19.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A043411</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(6S)-5,6,7,8-tetrahydrofolyl-(gamma-L-Glu)(n) + (n-1) H2O = (6S)-5,6,7,8-tetrahydrofolate + (n-1) L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:56784"/>
            <dbReference type="Rhea" id="RHEA-COMP:14738"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:141005"/>
            <dbReference type="EC" id="3.4.19.9"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Extracellular space</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase C26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.9" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020001418">
        <property type="protein sequence ID" value="CAB3989004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6Y5"/>
    <dbReference type="OrthoDB" id="64220at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005773">
        <property type="term" value="C:vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034722">
        <property type="term" value="F:gamma-glutamyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046900">
        <property type="term" value="P:tetrahydrofolylpolyglutamate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.880:FF:000024">
        <property type="entry name" value="Folate gamma-glutamyl hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015527">
        <property type="entry name" value="Pept_C26_g-glut_hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11315:SF0">
        <property type="entry name" value="FOLATE GAMMA-GLUTAMYL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11315">
        <property type="entry name" value="PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51275">
        <property type="entry name" value="PEPTIDASE_C26_GGH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Glutamine amidotransferase" evidence="8">
        <location>
            <begin position="27"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6 7">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR615527-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3989004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="31850" checksum="EFCD51A723691571" modified="2020-12-02" version="1">MSFEYLGKNYIPACYVKFLESSGARAVPIFNNLTEVETKKLFESINGAVFPGGIVNVSTSGYANISRTILKLAKKTFDEGGYFPIIGMCLGHQILATLVNGPTDIRIRTDSLNMIAPLNLPKNYRDSKLFRSLSKDLMKTFNKTLITTHAHELGLPLELFRENKTLDQFYKVITTNVDRNGVEFVSTMEAKKYPFYSMQWHPEKPPFEWNPEKVIPHFSASTELSQYISNFFVNEARFSKHKFASRKEERAALIYNHNPTYIAGINEHSIFEQVYLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7G6</accession>
    <name>A0A6S7G7G6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063289</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001215">
        <property type="protein sequence ID" value="CAB3987675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7G6"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24412" checksum="31A6D024D68CB2A8" modified="2020-12-02" version="1">MTSLRLALIKQCKYPSHYKHGLVTPVPKAYPPTDVSNDFRQISVLPHIGKILERVQLQLNQNDIILRSSQHGFTSGRSTTSALISITQPWFNATDNTCRDKAGIHALFIDFKKAFDLVDHRILLNKLALMNVNKSFWLWVKSFLSGRTQQVKINQTLSSIEGCPAGVPQGSALSPTLFNIHIDDLDTSVPEDLEVSTYKYADDCTQSECIMKGECSNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCF4</accession>
    <name>A0A6S7GCF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107355804</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034998</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001790">
        <property type="protein sequence ID" value="CAB3991114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCF4"/>
    <dbReference type="OrthoDB" id="5966402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="97"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="23724" checksum="7F7DD3CCE5ACD348" modified="2020-12-02" version="1">MNWTAIASCLGVSPKTLHRRRIEYGIADTYSDITGQELQWNIRDILRLTPFSGETYVRGALRARGIHIQRWKVREALKTIDPVNRAIRRRYAIQRRLYNVRKPNRLWHIDSNHKLISWRLVLHGCIDGYSRAIIYVKCFTNSLAHTVLQCFVNGMKKFGLPSRVRGDRGVENVDFARFMIANRGLPNRGLPCYKAEIRYPKASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIT2</accession>
    <name>A0A6S7GIT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">BTB POZ domain-containing 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082917</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000813">
        <property type="protein sequence ID" value="CAB3984990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIT2"/>
    <dbReference type="OrthoDB" id="2359033at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.820">
        <property type="entry name" value="PHR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012983">
        <property type="entry name" value="PHR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038648">
        <property type="entry name" value="PHR_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08005">
        <property type="entry name" value="PHR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3984990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="397" mass="45160" checksum="5EE6CB761318B045" modified="2020-12-02" version="1">MVSVQSNVDWQSTKNTILERNRHMFNNSDMSDISFTWAGSDKTFYAHKYVLGTSSAVFHAMFYGGLAVKNSIVHLSDTNEESLEQFLRFLYTEECTLTADNVVAIMYLAQKYIIPLLNKKCVNFLLENLNLENVLDVLEQAVRFDEKELETRCWNVIEYNTRKVVASDSFNNISQKTLAKLLMRDKLNIPEVELFQAVLQWIDFQCSRKNLEPTGENRRCIISKAIYAFRFFGITQAEFIQNVSKSGLLTVEEMIPIHEKFLGIDSPALKWKLPNRKPGNIDRCPCLVFVRFGDQDESKYQVTLEVKEAKVTGSYISERNQDDIPGFDVMLNEPVILKQNEVVTLSATIKGPRSYYGKNGSPSVILEGVTATFGDSPSTNNGTCPDRGQFDEIILDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKT4</accession>
    <name>A0A6S7GKT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">G- coupled receptor Mth2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A063682</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001634">
        <property type="protein sequence ID" value="CAB3990279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKT4"/>
    <dbReference type="OrthoDB" id="5959886at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15039">
        <property type="entry name" value="7tmB3_Methuselah-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001212">
        <property type="entry name" value="Somatomedin_B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00524">
        <property type="entry name" value="SMB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50958">
        <property type="entry name" value="SMB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3990279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="970" mass="112829" checksum="7776FFC09DA9BF53" modified="2020-12-02" version="1">MAMKLLIVITTLALHYAYEYQDANILEQNTFRKQQNTRFVQQRTTGMFQKGRMVKTSRTIDVDGSNSRKLSGGKLGYNSNKIKERAFNVSALKRIAFKKQQKMDFKRVRRETTHQNTTEQSLQCEVVSLSCRNCCENSNNCPHKTNFCRCDSLCTFYNDCCVDFQTFCGTRKEISFGVDPQQLSCMAPRHVDTRSRESDHIWMVNKCPKNRKIDDISRNCETADGIKLLNITTMRKLLPVVDKNTNLLFRNEFCAQCNGIEKFEYFGFNMRCYVVPPATITSFEELVEFAKLYCETKEFISIFRDVHQAVRECIQYFRYLCPTLKELNEKCDRHILSTYHCISITHWCNLNISKWDVLAYDRCMQSSESLSDMPEEGPTRIEHAIASFTVVLRLSKGAPFAKVQGTRCMNGLFYDPYLETCRYGESIRPPLKENFDRFDVVVWLDIRNFETLVSIYWTMPTLNEAISSLAQLFNFKYSQVSALQYIPTETGKRPETQIMRFKLELTDEQTLRLGKANNNTLSHFEKHPKNSTNYLPLQRLLFFSGKFNITVSNEIVTIFKTTSRQLECIRKHTFLQGNYTSVQNGKYYFINSTGKTFARNQVFLGENKSISVCERIVFSTCVGRRINLTSDEYVKFENLSIFYNRTKKIYDFGEYDIEDGKIFMCIPEKPSEPIHAMPSDSVFIETYLTLICVGLSLVSLFLVIQTYLIFAELRNLPGKNLLSLSLSLFLVQLLWLIPDAWYPSTFCLVVAVLKHYLFLVSFVAMAAIAWDSYTVFASKDFGIRKDSASTKPENKKFYKCSAIVWGLPAMSVVACTVVDQKDIYAVYVNELWCWFDNIQAQKYLFVVPVGLLLLFNVTFFALTVFCMQRSHSRTRLILSDESHKTMFWIYLKLSALMGFSWLFGLIYLLWRTPVFSYLFVIFASLQGVYIALAFVVKKSVWEKYKKLFGRQNKYQPDYRRKLCKSRETRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMP2</accession>
    <name>A0A6S7GMP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001788">
        <property type="protein sequence ID" value="CAB3991089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMP2"/>
    <dbReference type="OrthoDB" id="411871at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="678" mass="71943" checksum="85EF765B9E2022ED" modified="2020-12-02" version="1">MWYIYCCLPVIAVIGVIGVIVVIGVIVVIGVIDVIDVIGVIVVIGVIDVIVVIGVIDVIDVIGVIDVIVVIDVIVVIGVIGAIDVIGVIVVIGVICAIDVIGVIVVIGVIYVIDVIDVIGVIFVIAVIVVIGVIDVIGVIGVIGVIVVIDVIVVIGVIYVIDVIDVIGVIDVIDVIGVIVVIGVIVVIGVIVVIDVIVVIGVIDVLLALLELLARYWRYSRYWRYRRYGVIDVIGVIGVIVVIGVIDVIGVIGVIGVIGVVGVIVVIGVIYVIDVIDVIGVIVVIGVIDVIGVIGVIGVIVVIDVIDVIGDIVVIGVIYVIDVIDVIDVIYVIGVIVVIGVIDVIGVIDVIGVIEVIGVIVVIGVIYVIGVIVVIGVVDVIVVIGVIVVIRVIDVIGVIVVISVIDVIGVIVVIGVIVVIGVIDVIGVIVVIGVIDVIAVIVVIGVIVVIGVIKNIKIRNEFIQKQFGFRPNHSTETALLKCTDQWLLNMDKEMANGVLFLDLKKAFDTVDHSILLQKLYQYGIKGTPLKLLASYLNNRKQVCVINNKSGQETVQCGVPQGSNLGPLLFSLYINDLPMCLEYTQASMFADDTNLSCTGRTPAEIEHKLNADLSNVNDWLEANRLTLNTDKTEFMIIVSKRKLNQFRTDIRIHINGSIIKQVKQKKTLEVTTCGATGGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUT3</accession>
    <name>A0A6S7GUT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071821</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002298">
        <property type="protein sequence ID" value="CAB3993636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUT3"/>
    <dbReference type="OrthoDB" id="10455067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035992">
        <property type="entry name" value="Ricin_B-like_lectins"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000772">
        <property type="entry name" value="Ricin_B_lectin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00652">
        <property type="entry name" value="Ricin_B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00458">
        <property type="entry name" value="RICIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50370">
        <property type="entry name" value="Ricin B-like lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50231">
        <property type="entry name" value="RICIN_B_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="23079" checksum="1A90F85C332ED899" modified="2020-12-02" version="1">MSNIVLLIVIVLTCISTETAAQVVCANPIKISELRVLKSNKCVNIDATDGRGKINTIECDGYRDQQIIMCKDGTIRNLKAPYNCFTPGKGGNGNLMSTSCEVYPAIPDYQKWRYGRSKIFVDIGGIEQEAREIVNVKSGACLDVNGRGGNGDISAYRCENLDDQYFYFRSRGKLMGHGRLQVEKSGYCLDVEGDQGRGNVLIDNCEDAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXP6</accession>
    <name>A0A6S7GXP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A036921</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003272">
        <property type="protein sequence ID" value="CAB3998124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXP6"/>
    <dbReference type="OrthoDB" id="9979188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000506">
        <property type="entry name" value="Adhesion G protein-coupled receptor E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052235">
        <property type="entry name" value="Nephronectin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24050">
        <property type="entry name" value="PA14 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24050:SF28">
        <property type="entry name" value="UROMODULIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00907">
        <property type="entry name" value="THRMBOMODULN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 5" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3998124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="362" mass="40241" checksum="19D4C1B0DA0D67DD" modified="2020-12-02" version="1" fragment="single">SPCPSTSKCETIRSSSGTSHRCVDIDECLTGKYKCGDGEECYNKENGYECRCTKGLIREKGKCIAKIDPCKAEPPVCDIKIQRCVSTNWTSYECLDIDECSTQKHDCDKKAKCINTEPGFKCQCIPGFKEYDNGRTCKDLNECSNKLLCAKHAKCTNLAGSYKCECNPGYSGDGKYCKDNDECKAHSKCSVDAICKNKLGTFQCVCKKGFHGNGKICKDINECSKKKYKCPAHSKCHNTPGAYSCKCRHGFKLKNGRCLDVDECKVGSHKCHKNALCTNSVGSYKCRCKKGFQQLKNGRLCLKDEKTSKSNNTLIIIVAVSASLLLVILISCCVCCRRRNKKRKKNDSEEFKTLLADQVAQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H627</accession>
    <name>A0A6S7H627_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">G2 M phase-specific E3 ubiquitin- ligase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003588">
        <property type="protein sequence ID" value="CAB3999436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H627"/>
    <dbReference type="OrthoDB" id="5987852at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2410.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="30154" checksum="38B8AA015DED6F8F" modified="2020-12-02" version="1">MAASIVQGGPAPDFMAPWVYDYISAGIEGVTVDQEKVVAQQSKELINRLQQVNSDKALQDLLMEEDVLEQLGNIGYRGVPHRETLKNRSSLIRSLCIKSYLVPKIPMLDQLCKGLQTLGVLDLARKNQTQMKPIFTPIGNSLITSDQLLDILLPKYSESTQIKEQEINTFKAMCDFIQELFFQAIPDCDSTIAHLLKFITGVKKIPRLEFSKKIDVHFLHGCQDGCKCRPTASTCFLYVRLPVHYQTSEDITFAWLSALKDCQGFGHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HB00</accession>
    <name>A0A6S7HB00_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004068">
        <property type="protein sequence ID" value="CAB4001366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HB00"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="20280" checksum="94E7BDBA8B91C7E6" modified="2020-12-02" version="1">MLYIYYSSYFSKGSFPKKDPGYEVAAHPVVVPVQPVIVPAQPVVIPAQPAIVLAQTVVVPVVDFCLIPTIRANYPVVVPVQPVIVPAQPAVVLAQTVIVPVLNQLYYQHNQLYYQPEPVIVSAQSAVLPAQSAVLPAQPDVVPAQPDVVPAQADVVPAQADGVPAQPDVVAAQPVVVPAQPVVVPAHPVIVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEX7</accession>
    <name>A0A6S7HEX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Argonaute-3 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004157">
        <property type="protein sequence ID" value="CAB4001703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEX7"/>
    <dbReference type="OrthoDB" id="10252740at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02846">
        <property type="entry name" value="PAZ_argonaute_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.260.10">
        <property type="entry name" value="paz domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014811">
        <property type="entry name" value="ArgoL1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003100">
        <property type="entry name" value="PAZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036085">
        <property type="entry name" value="PAZ_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08699">
        <property type="entry name" value="ArgoL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02170">
        <property type="entry name" value="PAZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01163">
        <property type="entry name" value="DUF1785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101690">
        <property type="entry name" value="PAZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50821">
        <property type="entry name" value="PAZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAZ" evidence="1">
        <location>
            <begin position="71"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="25895" checksum="13FF396B747606F5" modified="2020-12-02" version="1">MQAIEVVLQQKPRMRTIQVGSSFFDYPTGREKDLGGGVQVWNGTFVSIRPTQWKMMLNVDTSATSFYKGQPVLDFMCEFLGLRDYPRRLNKFQRETFAKEIKAIKVETTYMKRKQRASGLSFKSARDERSIAKEKYDVSLRYPDLPCVKIGQRSFIPLELCQVVHGQKKQRKLTGAKTQQMIRYTTIPAPDRMQKIVELIRKFHYEGDPYCRDFGISVSNKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HL48</accession>
    <name>A0A6S7HL48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004765">
        <property type="protein sequence ID" value="CAB4003930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HL48"/>
    <dbReference type="OrthoDB" id="5988929at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15346" checksum="6AFFB10CBD0BB292" modified="2020-12-02" version="1">MERLNSDCGSKEITHYSAYSTIVSSKRGTLKCIARDGWVNAQCKESFKEFKGYVDSMKELLFSLSREEMKTILSKYIKKTPKPLNFQFSEKLSKSEAVKKFQAKQQRNNTPLFPPGAVLMCSTYFVVLFLKYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMA2</accession>
    <name>A0A6S7HMA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004970">
        <property type="protein sequence ID" value="CAB4004683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMA2"/>
    <dbReference type="OrthoDB" id="6009785at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.2000.10">
        <property type="entry name" value="Frizzled cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036790">
        <property type="entry name" value="Frizzled_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="328" mass="37356" checksum="336CD69B5B258B85" modified="2020-12-02" version="1">MVSNTFGSVLLVILALDLSAFAFNSVQGSHEHDHHGTEFYVYSNRKGCMAVQSQPLCPSSQLNEWDATNYIEYIRDMQGILDEVEASNTNNSECITAFKAAYCSKLTPKCFEEGSKDFGNGNSACWKANTTCDNVVVLNFEEFCQSIPKGKQSLDECILPSSRIEGSCPQPEYQMPSDYLRQYERMSTSLKKHRYFEHIETARHLNSTNASLNGTLVFSRRCVSILKDIDCAPVYCSADKERILIKYSWETCKRAVDSCFNKVIDNLEDDVEGKKYFVEKKQSYMNVCKYYTNSTKTEFLTGTASYICKPRHQYFVSLVFVVFTNMIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HP87</accession>
    <name>A0A6S7HP87_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">E3 ubiquitin-protein ligase</fullName>
            <ecNumber evidence="8">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A073536</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the Deltex family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020003090">
        <property type="protein sequence ID" value="CAB3997410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HP87"/>
    <dbReference type="OrthoDB" id="527344at2759"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007219">
        <property type="term" value="P:Notch signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09633">
        <property type="entry name" value="Deltex_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.390.130:FF:000001">
        <property type="entry name" value="Probable E3 ubiquitin-protein ligase DTX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039396">
        <property type="entry name" value="Deltex_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039399">
        <property type="entry name" value="Deltex_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039398">
        <property type="entry name" value="Deltex_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12622">
        <property type="entry name" value="DELTEX-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18102">
        <property type="entry name" value="DTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 8" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 8" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU367105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3997410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="196" mass="21442" checksum="D06C7A3443FD2B56" modified="2020-12-02" version="1" fragment="single">QSKNTDQKARSREDKCPICLCNVTDKKTLSKCGHSFCAGCIDVAFRHQKKCPVCSQVYGPLIGNQPPGTMTVNAQSTSLPGLGLCDTIVITYRFPNGTQGPNHPNPGNSYSGTIRIAYLPDNKEGRKILNLLRKAFDQKLMFTIGRSKTTGANNVITWNGIHHKTSRTGGPTNFGYPDPDYLKRVQDDLAAKGITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPN3</accession>
    <name>A0A6S7HPN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061812</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005989">
        <property type="protein sequence ID" value="CAB4008005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HPN3"/>
    <dbReference type="OrthoDB" id="5982475at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="23683" checksum="F5C22CA2E5960AE0" modified="2020-12-02" version="1">MRPFPSMWNCRVIHPYGLDPFSGDVRSLQGFSRSLEILTYMRSEAARVGMHVERLAVSKENEICVVIFPWDKQELPTPQELVNGFFHFHPKISEYYTSHPEDKGQLKKCKLDFHIPQHNMDYSDSDEEADEDHECEAKPCLNRVFAMNDNKQDKLRDLRAFYEWLQSIMYPSVTVYLDDDKITPDAVFMLTQLAPGWVGGALTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPU4</accession>
    <name>A0A6S7HPU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005672">
        <property type="protein sequence ID" value="CAB4007006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HPU4"/>
    <dbReference type="OrthoDB" id="5988809at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11790" checksum="40DF1C5B6646F9D3" modified="2020-12-02" version="1" fragment="single">MWYTVPRGKVKVDLIEKNLCVDAWAVDKSWSAEDLKSEAAKLFPKVLGIDSPELIPFEFVRSVGTAIVPITLHQGQALDSKVLRHISGSGPVYLRALQDLDQDEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXT4</accession>
    <name>A0A6S7HXT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073895</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003523">
        <property type="protein sequence ID" value="CAB3999132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXT4"/>
    <dbReference type="OrthoDB" id="5956379at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="33722" checksum="9DED37200AED4147" modified="2020-12-02" version="1">MANMLIGERFLKSFNVFKTKSNQHYENVKTFQRCLPSVVQKIMSSFDIQQRSQFSILSVGSGTGEVDIEIVNIVRQELQKQQQWSHISIFNRAIEPNLQSSNKYKENIAKFGDVVSSRYEVRQQTFQEYQESKEDPVSFDIVHFMHSLYYVDLEQTVLYCLENQLTEMGCLVCLMNDNESICNTVLMKQDELSNKASTLAQTSEELIKMAEKCGWKHEINCQKLFVDVTEVLNADSVEGNLLLDFLTNTENFRKSANNHVLEVTLEFIEQLAIAKDGKYLGEIKESLVFIYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ID73</accession>
    <name>A0A6S7ID73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008680">
        <property type="protein sequence ID" value="CAB4015347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ID73"/>
    <dbReference type="OrthoDB" id="5971315at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14418" checksum="F5FF33707C25836D" modified="2020-12-02" version="1" fragment="single">MDVQESAVSGVATASEFDPDSFADGGIIKEFNDSRFHDRITDFETGHPVPNEALNTSIPNRVEEDTIIIEQCMLRRNPAIVNDGGNETNDHALLVGMKFGIEDKEKFCKNEPCQPPESVLSERKKKIGEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDV9</accession>
    <name>A0A6S7IDV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from mobile element jockey-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008253">
        <property type="protein sequence ID" value="CAB4014320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDV9"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.740.10">
        <property type="entry name" value="Coagulation Factor IX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017857">
        <property type="entry name" value="Coagulation_fac-like_Gla_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035972">
        <property type="entry name" value="GLA-like_dom_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000294">
        <property type="entry name" value="GLA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57630">
        <property type="entry name" value="GLA-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50998">
        <property type="entry name" value="GLA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4014320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="279" mass="33309" checksum="35755F728E8904CD" modified="2020-12-02" version="1">MGIFPSEWKIARVIPLHKKGSRSVLDNYRPISILPVISKIFEKILYEQLYEYFTTNNLLSEQQFGFRRFHSTSTALLECTDEWYVNMDRGLYNLAVFLDLKKAFDPVNHDILLAKLELYGIKNTPLMLLKSYLSDRSQKCQFTTQEPVYVQSNHDLGSCDEENYGRRELIKDSDGNETLLICSHDNGVYSWKEDAMETEIDDTDHVMEDVMLKREAATEFFQRDRRGSLLHECYTECCSWEEVRENYGNDRRNAIKYWNKFRMWKKKNKNKCKHRRWTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDZ2</accession>
    <name>A0A6S7IDZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ankyrin repeat domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081285</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008271">
        <property type="protein sequence ID" value="CAB4014360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDZ2"/>
    <dbReference type="OrthoDB" id="5968364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171:SF9">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13637">
        <property type="entry name" value="Ank_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="10"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="446" mass="48855" checksum="39BF3A88A6896481" modified="2020-12-02" version="1">MSKLVIAAITGNFHEVKRLVEHGADVNCDDQFEGSPLHIATSSGSLEIVKYLLEHGADVNCENHHKGSPLRHAVSSGSLEIVKYLVEHGADVNCGDQYERSPLHIATSSGSLEIVKYLVEHGAGVNCEDQYEGSPLHIATSSGSLEIVKYLVEHDADVNCENDFEGNPLHSATSGSLEIVKYLLEHGADVNCENHYKGSPLHSAASSGSLETVKYLLEHGANVNFENHNKGSPLHSATSGSLEIVKYLVEHGADVNCEHHHKGSPLHSAVSSGSLEIVKYLVEHGADINCKSWWNNFEPVIQNAVKFGSLEMVKYLIEHGAELTNEENFDMPKILCLACEGGNASIVDYLLQHGVMKDVNNWKLHSPLRIACLKGHTAVVQTLLKYNVDIRKEKEPLICGNNEIINILNVELKKSLKHRKKITILKGMNNVNLTKNSITWKPGVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG40</accession>
    <name>A0A6S7IG40_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003344</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008650">
        <property type="protein sequence ID" value="CAB4015260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG40"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14257" checksum="5E47E73D016A9543" modified="2020-12-02" version="1">MTSTIRERNYQPICTECIRPTMNDCEYELVVLKPEDFEEVAMFLDNHFITREPVESIRLGLAAGCNRAAVTITNRYIGSLYRKLGFETVSVLDLTKLEPKYKGRLNFDNMNGNSTICAMIKQGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJ84</accession>
    <name>A0A6S7IJ84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010323">
        <property type="protein sequence ID" value="CAB4019155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJ84"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="157"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="786" mass="88672" checksum="6274C4C6ED2DC152" modified="2020-12-02" version="1">MFLMKLKKAGRRISTYFFAANDVDDNHQVPTLLSLIGSKTYSLLKDLLLPEKPADKNFDEIVSTLQKHLNPKPLEITERFRFYKINQQEGEGILGYVAELKKLTTHCNFGSNLGETLRDRLVCGLSNQQILKPLLAESKLKFSKAADIAVAMETATRDATEIHSEGREEKPLGLDKLTLNRPSNRSDSGPPSPVVCYRCGANTHVATECRFKKEVCHKCGKRETEPDKYGHLLNNLEVHNVNKSNNDVIWVDVKVENQPLSMEIDTGSAVSILPCDMFLEKFRDKKLEKTTTVLKTYTGELIVPVGCLTMQVEYLDQLCLLPFHVVQTKGPVLMGRDWLHKLRLNWKTIKLLKASDPSHRNPGTTTQGILKNLLDTYAEVFEDKLGTFKSAKARITLKEGSQPQFRKARQVPYSLRPKVEEKLKRLQSEGILSKVEWSDWATPIVPVPKQDGSVRICGDFKAGGKKFSKIDRRQAYHQIELQEESKKYLTLNTSMGLFQYNRLVFGITSAPAISQRTMDQLLEGTSGISCILDDMIVTGKSDGEHMANLEEVFRRLHHHGLRANKSKCEFFKEKITFCGHDINSEGLHKTTDKTAAMVNAPRPQSVAVLQRNWSDAHSKWPEVEIMPSTTSTQTIDRLRTIFPRYGVPAQVVTDNGPQFTSAEFQLFLKTNGIKLITTAPFHPATNGQAKRFVQSFKHAMKCEKQSASQLKTNMAKFLLAYRNSPHSTGESPSVLFLGRPLWTRLDLVKPDLQRNSKVMNRQIDQAGRKGHSPTRQLSIGQTVMAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IW41</accession>
    <name>A0A6S7IW41_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Sodium/hydrogen exchanger</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A056439</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Recycling endosome membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011840">
        <property type="protein sequence ID" value="CAB4022167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IW41"/>
    <dbReference type="OrthoDB" id="196264at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055038">
        <property type="term" value="C:recycling endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015386">
        <property type="term" value="F:potassium:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015385">
        <property type="term" value="F:sodium:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051453">
        <property type="term" value="P:regulation of intracellular pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098719">
        <property type="term" value="P:sodium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.1330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018422">
        <property type="entry name" value="Cation/H_exchanger_CPA1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004709">
        <property type="entry name" value="NaH_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002090">
        <property type="entry name" value="NHE-6/7/9"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00840">
        <property type="entry name" value="b_cpa1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10110">
        <property type="entry name" value="SODIUM/HYDROGEN EXCHANGER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10110:SF187">
        <property type="entry name" value="SODIUM_HYDROGEN EXCHANGER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01084">
        <property type="entry name" value="NAHEXCHNGR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01088">
        <property type="entry name" value="NAHEXCHNGR6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0050">Antiport</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0967">Endosome</keyword>
    <keyword evidence="10 13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0915">Sodium</keyword>
    <keyword evidence="12 13" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 13" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Cation/H+ exchanger transmembrane" evidence="14">
        <location>
            <begin position="109"/>
            <end position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4022167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="575" mass="65184" checksum="793A95B9179F0DFE" modified="2020-12-02" version="1">MAIFVGGFLVKRASAKDNATKESEEIPVKLEGKRESEIANSHNIDSLSMLIFTNLLIFTVLMTWLFKIRRFRCFHETGVATVFGIVVGAVIKYNRFHDTYNNSITVDNCNNLSVAPEILKVNINGTFYSYSFKGIIYRDDDAHENELEARSTFNPEIFFHVLLPPIIFSAGYNMKKRYFFRNLGAILTYAFIGTIISTFSTGAMVYGYNVYMGVPESFDFTECLLFGAMIAATDPITVLAIVTDLQVDVDLYALIFGESIFNDAVAIVLYRAVENYLAYQPIAKREFDLYSFLWALNSFFSIFFGSLLIGIGVACTNALVTKLTKIGSFPILETALFFVMSYSSFLAAEVVNWSGIVALLFCGVTQQHYTYKNLSEASRTRTIQTFELLNFLSENFIFSYIGLSLFTFTTHIWDFRFIAWSFLAITVGRILNIYSLSFFLNLGRSGTISWNFQHMMMFSGLRGAIAFALAVRNTVSMPRQMMLTATLSIVLVSVILIGGATTPVLKLLQIKTGVDEHQEELKARRLSLIDINDPTVSTPEERREKKQYESAWLVRVWCNFDNKYLKPIFTEEHDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZZ0</accession>
    <name>A0A6S7IZZ0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006955">
        <property type="protein sequence ID" value="CAB4010911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IZZ0"/>
    <dbReference type="OrthoDB" id="6494786at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="74"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="590" mass="67975" checksum="C01C99C86E467747" modified="2020-12-02" version="1">MAYSFKLTTIYTCSYGSCYQETLLSIQVPGSKYFRCLSFNAQSTTKLPDGTYNDAHSHYPSLCSDLPSGLRITQWNLRSLAPRINNTKLDEIKLILQDPGSETHILGVTESWLDESIDDTCIKINGYTHERSNRSSKTIPIDKHHAGGIIVYIKEDIPYFRRNDFESINVESIWLQLCPPNSPAHLICVAYRCPEYTISQWIENFEMQLNNAYVEGHQLTIMGDFNIDVSKNTSDSQCWLESMDDLHLHQIATESTRVTENTSTLLDHVFTSVPHKIRSVKVPRIGISDHYPTCVVFKDSFEKRVKKQQQPDWMTYEIIQCMAQRDPFKSINEMVNYKTYRNRCVSLIRDAKTTYYKTCVEDHKGDSKKLWQYLRDIIPTNLKTAPSSLRNNSNNSSISDPEDMCEHFNNFFSTIVNQYVAVQQFSSNFDKLSEMVNSRINSDDAFSIPQLTEEEVCSYLRNLDTHKATGLDGLSHKILKMSTYLIAPSLTKIFNKSLSSGMFPTKWKTSKITPIYKSGAKCDVNNYRPIAILCAVSKVLERHIHNHLYQFLVSHNYYIMPNLVFEEITRVKQRYANLWICGHPTWRAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAN0</accession>
    <name>A0A6S7JAN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038584</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013938">
        <property type="protein sequence ID" value="CAB4025990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAN0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="92" mass="10180" checksum="1A1859030327AF3C" modified="2020-12-02" version="1">MANSMIRPVSIRAGLGYPPLQFTTNRVECINHLLSDEADGQPQTIDERQLYIQRVFDADISNCEVQQKQCVSTLPPPPVDNLTSNSGLLPIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JC47</accession>
    <name>A0A6S7JC47_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="18">ATP-binding cassette sub-family B member 10, mitochondrial</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="19">ABC-mitochondrial erythroid protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="20">ATP-binding cassette transporter 10</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">PACLA_8A003362</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="21" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="21">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="17">ATP-dependent transporter located in the mitochondrial inner membrane that catalyzes the export of biliverdin from the mitochondrial matrix, and plays a crucial role in hemoglobin synthesis and antioxidative stress. Participates in the early step of the heme biosynthetic process during insertion of iron into protoporphyrin IX (PPIX). Involved in the stabilization of the iron transporter mitoferrin-1/SLC25A37. In addition may be involved in mitochondrial unfolded protein response (UPRmt) signaling pathway, although ABCB10 probably does not participate in peptide export from mitochondria.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>biliverdin IXalpha(in) + ATP + H2O = biliverdin IXalpha(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:82359"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57991"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="16">
            <dbReference type="Rhea" id="RHEA:82360"/>
        </physiologicalReaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCB family. Mitochondrial peptide exporter (TC 3.A.1.212) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015457">
        <property type="protein sequence ID" value="CAB4028397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JC47"/>
    <dbReference type="OrthoDB" id="6500128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015421">
        <property type="term" value="F:ABC-type oligopeptide transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042802">
        <property type="term" value="F:identical protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090374">
        <property type="term" value="P:oligopeptide export from mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18573">
        <property type="entry name" value="ABC_6TM_ABCB10_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03249">
        <property type="entry name" value="ABC_MTABC3_MDL1_MDL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1560.10:FF:000048">
        <property type="entry name" value="ATP-binding cassette sub-family B member 10, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000403">
        <property type="entry name" value="ATP-binding cassette sub-family B member 8, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394:SF1">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394">
        <property type="entry name" value="ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002773">
        <property type="entry name" value="ABC_prm/ATPase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0007">Acetylation</keyword>
    <keyword evidence="8 21" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="7" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="11" id="KW-1278">Translocase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00052250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00055589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00072683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00075187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00083334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="CAB4028397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="691" mass="75930" checksum="83A1F921EF32452D" modified="2020-12-02" version="1">MCIVESIIPKISRSKMAFRLISKILYDSSKSKIYWNVCNISQRFYGTSFSGTVFLGSRLCVQTFLQTARHGRNYFIQSRICFKRGLNTGTAVSKEKGSDLRRLFGLARPEALRITGAVVLLFVSSGITMAVPFCMGKIIDIIYTESETHDAMIQKLTAFSKILCGVFLLGALANAVRVYLIYTSGERIVFRLRHQLFQSVTNQEVSFFDKRGTGELVSRLSGDTSLVGHAITYNVSDGLRALVQASAAVSMMSYTSPKLASIVLGIVPPVAALSVVYGRYLRGITKNVRDSLAVSTNIAEESLSNIRTVQAFGQEDKQIARYRNKIEEVFNLTKKDAMASAIFWGFTGLSGNLIVLLVLYYGGNMISLSQITVGGLTSFMVYAAWVGISVGGFSSFYSELMKGVGASSRLWQLLDRKSLIPRSVGVALHEDDLGKGIEFNDIHFKYPTRPDVPIFSSLNLTFPAGHVTAVVGPSGSGKSTITSLLLRFYDPDVGSVLIGGHDSRVVKPDWLRSHIGIVNQEPILFSGNIEDNIAYGWRPENGSLKFQDVLNAARQANALEFIESFPQGFSTVVGEKGQSLSGGQRQRIAIARALLKNPKILVLDEATSALDAKSEHLVQEALDRLMKDRTVITIAHRLSTIKNAHNILVLDKGKICQSGSYSELMEDKHGLFYKLIEKQTLSNTTINSLPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGI7</accession>
    <name>A0A6S7JGI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase 15</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016694">
        <property type="protein sequence ID" value="CAB4030187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGI7"/>
    <dbReference type="OrthoDB" id="5988477at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="27510" checksum="075C49352CD6EE39" modified="2020-12-02" version="1">MADASDSVSGSEDEFNSPESPGPSTLRQSNKSTRKDSGAAKYRSKFSTAWKKQYPFINEVRTDKHSFYCTICKHNVKYGHMGLSDVQQHLTTSMHQRYAKTEIAKNYSSRRTKTACIINGTVAPFFQQSLVEHAKNNPFSIAIDGSSDNALEKINPLTVRIFYVNRGNVYTQFLDMCMSSSSTAEGIFSKMEDAFTTHDVSWNNCVGLGVDNTSVNMGCRNSIKTRVLEKNPAIYIMGCPCHTIRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JN73</accession>
    <name>A0A6S7JN73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037926</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007466">
        <property type="protein sequence ID" value="CAB4012318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JN73"/>
    <dbReference type="OrthoDB" id="10063284at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16894" checksum="C819ECFEC96BD8D5" modified="2020-12-02" version="1" fragment="single">MNYTTTLRDSFDDFEEKGRLRSRSKSYKTEVGRKRTRSIKLTLNDGASEEAEFTPSLKNGADNLVQRYPNDLEPSFAEELVHFCEYFKGNNLPRKEDALDDSDEAVSVELQMYRFLAKREIHEVFPNVEIALRIYLTLMVSNKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPL6</accession>
    <name>A0A6S7JPL6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF6589 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A012743</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017360">
        <property type="protein sequence ID" value="CAB4031100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPL6"/>
    <dbReference type="OrthoDB" id="6146693at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6589" evidence="2">
        <location>
            <begin position="476"/>
            <end position="672"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="350"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="360"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="676"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4031100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="676" mass="76210" checksum="BD9FE6DFE8C157AF" modified="2020-12-02" version="1" fragment="single">MDIQIEEDICILCLNNSVPRNRFIINGKDSVLNTASKLFNNLPNNWKYTLTTRFRNIASGDINFLCRTCLKLLEKRDRILSNLTGVENKIQGHFSTKRSSETDLASPSKFIALSDDEEAYIPIHTLQPKAHSTPVKVVPKVSKIKKSFSECETGVKLTVKWPSQTKERTIQPELEPLGRALLRGTWKEIASAVYRVKEIRSELIKCMLKQLSVECCDIISSKRPSLLRKTTASDIRKLSLANICHEIKERAPLLYSVMMTTATPNRKKYDATEWLPSVAIAAAVLLKQRCRMVNSVQLLIMTIIKFSGFQTLCGLFSTMRIGVSASYYNKKSDEFGSIFNENLVQEKASDESSMSILEQKGADSDKTTSTEKAHNTATPPDNDVSLPLTSCQVDIPQTPDADLHSTKEHLSAGCKYVIDNYDMFQKVRTMTEINQNRDIHWVNHNRVSNRVSGNHLQDNTAICDLKNLDNSKVTPSVIEHIMQRNNYITLIERILVSSISYLKFCKGIVNQQIPHKHVKESGMKSKKECLGIMFDDENTTDGIAKVLTKLHGYIPKATNGQNKSIYHEAGVVGDQLTIERAVNRLLSLSNGFTPDERLEGIHTEIADWHAELKFLLLIYTRMYSTSSADDQCALFADRNLINRRNVSSDTKQHAYSPNKQMFLLALKARVVAAGMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQ97</accession>
    <name>A0A6S7JQ97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Gastrula zinc finger -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A034503</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019005">
        <property type="protein sequence ID" value="CAB4033171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQ97"/>
    <dbReference type="OrthoDB" id="9439903at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:002169">
        <property type="entry name" value="Zgc:174573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000340">
        <property type="entry name" value="zinc finger protein 473 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24394">
        <property type="entry name" value="ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24394:SF44">
        <property type="entry name" value="ZINC FINGER PROTEIN 271-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4033171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="18253" checksum="75B4B1B73F9333C5" modified="2020-12-02" version="1" fragment="single">MAQQHRENIWRDYFTAELENNEVNRQLCAVDTFSWSPETQEQILSEWNDWRRDRNPGHGCNHCEKVFTRRADLKHRIQSLQFGEKSFTCDQCGKSFATKDKLNHHKKIHDKGKVYKCARCHKKFDRKDNLNRHMKMHERRGAEREYNCNIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQG1</accession>
    <name>A0A6S7JQG1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049804</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017599">
        <property type="protein sequence ID" value="CAB4031400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQG1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="314"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="319"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="351"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="372" mass="41614" checksum="ED5E2DCE3C484564" modified="2020-12-02" version="1">MMEIKSDLKQMNTLMKNLYHESTPAKRCSTDHLCCVNTCEVGIQTDIEITQYPNQSGERCASMCNDLSTEFDGLKLDLVISESKIDNKIRINGDAINQVQAEFAIIKNQLGEVVHQVDRLVNTNENNNTNNNNIAESIVRTANENNSLINTIETLYKGLKTMIALCNANFINHSDQPSVSPISTLDQTNIITSATEPNQQQHQILNPSAVCNIQDESCVEFFVTVEEASITSEALSLDNTLSNSYPNVISISDDQQAGLSSPNGNSTTVEEMVTGINQNYNPSTMLPSFDDQLKEYRTKHSHTDRMIVVHNNSGITHQKPTRKSTRNRKNTRSSHIKSKRCNYMPQPISHIDTSAYNPKNFRKNCSSNRPPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRZ3</accession>
    <name>A0A6S7JRZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007815">
        <property type="protein sequence ID" value="CAB4013248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRZ3"/>
    <dbReference type="OrthoDB" id="5963582at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28297" checksum="A8A9087E59436209" modified="2020-12-02" version="1">MEKRSEKLQFNPTTGKLTVRRLPMKNCDNVIYSSTEAPSFFGGNFAAPLEKDKLVILPPTYRKKTVSVETMHISCQSDTYEPNHNYGGVVIYQYNDKSEWRTANNTHCKTGYIVIQDTDSENVKKWIGIEPGAVHGAVYRNAFGESVNDAEVVGEGFAIRNDKLVETFEINSSVFNNPECSVFHDHRRRMHELSEHCVKKYVTNALHKNAPYRSLTVRDAIGDLPSLANNRKVITEVAKTFWDLHSLCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JUI9</accession>
    <name>A0A6S7JUI9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010792">
        <property type="protein sequence ID" value="CAB4020122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JUI9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="29266" checksum="389637F1343D420C" modified="2020-12-02" version="1">MSKGDFSGCSFLNNRSSSSSYLTNQALRRVRHLHTSIATQKWRKSRVNDERSLNIKKCLADLSPRAQAFAISLGPVAGSASPIKCQPCVYSARDSSRVSRSYQRTTSSRDSSRLTNSRESSSRGNSKCGRCHNGIDRDQSGIPSTSGVHCVNMNAINGHDPYTVIQHGAFIPRRRILTHKPRQRRCKWTENLDIPLDELRLDHDETGSGKPPEVKKTLPSVVVTKSDQVYSNVRQTLDVKNVRLKTPPPSPSVRHINVHLPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JY88</accession>
    <name>A0A6S7JY88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063398</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011196">
        <property type="protein sequence ID" value="CAB4020941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JY88"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="68" mass="7801" checksum="F567AF6952755236" modified="2020-12-02" version="1">MQTSRDLWKLPCVFETTSQVNAKECLRTSINTCEEPTRNSQNNSAVFRCISKGKGFYFKTVEHANKLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1G7</accession>
    <name>A0A6S7K1G7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase NRDP1, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A044351</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022864">
        <property type="protein sequence ID" value="CAB4037231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1G7"/>
    <dbReference type="OrthoDB" id="1630758at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412">
        <property type="entry name" value="KELCH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24412:SF441">
        <property type="entry name" value="KELCH-LIKE PROTEIN 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4037231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="509" mass="56983" checksum="A2CDD1BDE7D8DB3E" modified="2020-12-02" version="1">MATGYEDSRFETQVDQSLHCAICTEVLKDPVQCRRNEHHFCRNCITEHLRHSQNCPTCKDPLTVETLVRPQRFLANTLSSLKISCENSERGCRKVIELGSLDTHVATCGFSPVPCSNDQCEEIISRRDKEIHENKVCGFRRVKCDYCAQMVLYKNFMQHTCPAQKEIRKIKAELREVRSTLDEMFKMMQNMMSSLTRLERNTAQRSEGSHASSGQELQAEIVVAGGFDKSVEVFNMTTKTWRSLSEMNECRDGASLVLYQGHMIVTGGVQEESGICQLQDSAEELNLAEQDGHWVVSQFKLPVPSCGHACVVYQNRVFLIGGYAFPETYDTIHEIQLTPPYTSRLLTKMPMPICYHGAEIVNGKIYIIGGSTTGDYEDATSTVLMFDPATNTCTELKPLPYTASTMTTVTWKDNVVVLGGVDNQHNTLSTVILYNVTTGSHRMLPEMTKKRYGCTAVTIGDNIIAMGGCDESDTDLNSVECYNFHTNTWTEFPAMAKTRSGAAAVVKYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1J4</accession>
    <name>A0A6S7K1J4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018008</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022889">
        <property type="protein sequence ID" value="CAB4037261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1J4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="19502" checksum="5295EFF2143C2F25" modified="2020-12-02" version="1">MGSSTLRRTSFYRDEARRLDQNEEELFPDDTSASWKRRSGKQKAKTIGKTYIERMESTHLLINEKDKELQNIKARFKKCTREEWDLTEEEYKKVRVQLDEVYTKLKFAQEALSKALKHKRENLHKRLKEKNERDFKSDYNSRKTPDANLTVYLYPWQLFML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4F4</accession>
    <name>A0A6S7K4F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004318</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025206">
        <property type="protein sequence ID" value="CAB4039317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4F4"/>
    <dbReference type="OrthoDB" id="5989635at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="21651" checksum="743AFADA6AC2FF74" modified="2020-12-02" version="1" fragment="single">MGSVMLRIALKLLIILWLKKPGFTTASSVCYVFHGEEAIDPNQTLVYQSLWCYQQIYDAQVGRKVDLQLLLILSGDVELCPGPECGDCLNINPELECLIKQRGLKCFHLNVRGLWSNLCHVTELLTAHTDIGIFTLSETHIQDEPDELYVINGYSFISLPRSNGLGGGVAVYISEQINWTRRYDLESELECI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K5E6</accession>
    <name>A0A6S7K5E6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027158">
        <property type="protein sequence ID" value="CAB4040716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K5E6"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="643" mass="72506" checksum="45FAA1CBE3613E0D" modified="2020-12-02" version="1">MGGGVAIYCRDNLPFTVLNTQDSINECLWIKLNRINCKPFIVGCVYRPPCQPVDEFLDGFNNSLSEFDSSFDKVILRDFNIDFTPGRTNANIGMKRKLARLVNNHELKQVISTPTRITEHTSTTIDLVFTNISHKAIEIGVSNPSLSDHSLVCCVFKSGSIRSKPKIVESRSFKNYDKQVYYTDLKLVPWHTVFNNTDNIDDCVEIWNKLFLNIVNTHAPIKSYKLRGVMSPWMNKQILDLMRQRDYHLKKSERSKNSHEWALYKQLRNKVNTLIKNSKSEYYTNLIQNCKGNPNDFWRELKKSLPASKYLTDISNIEIDGVSFTSAITIASALNSFFVSIGEKLAEKFNPTSSARNGPTPSGFTFSFESVTEQFVLNAINQLKAKKSCGLDKINARLVKDAADVITPSITKIINISLTTAKFPSAWKNAKVIPVFKHGPKSNPTNYRPISILPVLSKILEKAVYTQFNYFLNNHHLISPKQYGFRLKSSTITAVAMFTDKILQSMDNGKVTGTVFLDLKKAFDTVNHNILISKIRALGADDNACLWFTSFLSNRTQVTCCNNAKSDPASISIGVAQGSILGPLLFIVYVNDLPKCLKFCDVTLYADDTVLSFASSSTDEIQRKMNSDLNCIHNWLLDINFEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KB01</accession>
    <name>A0A6S7KB01_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025828</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027001">
        <property type="protein sequence ID" value="CAB4040591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KB01"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24915" checksum="CAA5321617B0A7CB" modified="2020-12-02" version="1">MKSYLRKWGMQINPTCPYCQHTEDTHHAIVNCQTAQELWSDIQPLLMDIARQPIKTDMETLVFHRNLPNDDQAKEICHYVLATAAEALWHTRNKKVYDSTYRLGNMKNKVIGSMVTWFLLLSYLGPIFLVLSPWSCRLGLVALVWPFRSCHLGLAALVLSPWFLALSLLAFIDVILHCEIEARDVNVREVIEDFCGQVDSYTDIFEAVVLMAPGRYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KGS7</accession>
    <name>A0A6S7KGS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029144">
        <property type="protein sequence ID" value="CAB4041911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KGS7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11062" checksum="3425D8E60B47F2F2" modified="2020-12-02" version="1" fragment="single">MQCFVQGLRQDLKEHVILQLPDTYAAAVDAARLKNSLSRPSTSVLPNQSSRALSAIDLGSSHVTAQTTRNTHTDAPNYVTRQEFMSLQNQLQSIPPNSQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMV3</accession>
    <name>A0A6S7KMV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF1640 domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039829</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011658">
        <property type="protein sequence ID" value="CAB4021848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMV3"/>
    <dbReference type="OrthoDB" id="203237at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.20">
        <property type="entry name" value="Apolipoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="39274" checksum="18FD55F21D7B9AD2" modified="2020-12-02" version="1">MVQVENLKRHVASCGFSPVQCSNDGCNVLVNASNKLHHETEVCDFGKLKCHHGGQLKNEVREMRDEMLARQNKMRNEMKEMKQEVKGMIRNEMERIKMELKSEIKNELKGMKAEIKNQMKEMREEVKTGIKVEVNRIKEEMKNEMKGMKVEMRNGMKGIIKTELKGIKEEMHNNEMKDIVANAVRDAMTGMKGLEVEMQNSKQSSKATCSSDAVEDIFLVGGEHKKGWKVVKNKSTECFNWIDQTWTSAVFEGRSHTSTCFNAVIMYDVITGRSQMFPCMKHKRRGYTAVLTGNVVVVMGGINENSEYLKSVECFDLELHVWQHLPDMLEPRAYATAVVKPNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L6X9</accession>
    <name>A0A6S7L6X9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A041513</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019565">
        <property type="protein sequence ID" value="CAB4033802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L6X9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4033802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20234" checksum="7FEC409C1C2DF085" modified="2020-12-02" version="1">MRGKLFFLEANPTDLTSSLVPYEPTTSVLNLSDTVTMSPTTLAQVTAEPKSTASISSDKECTCSNKVFIALFSISFVFNALLGIIVGFQRKKMQRNQGKNLQKEDLKNTNVQTRTISGNEISAYEEVVIDSGIHNGGIYDESWSDHKYEEPSNYEPLRRNPLQDQSDEHNYQSLTTSQKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LJ02</accession>
    <name>A0A6S7LJ02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000038</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023408">
        <property type="protein sequence ID" value="CAB4037733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LJ02"/>
    <dbReference type="OrthoDB" id="5980364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63829">
        <property type="entry name" value="Calcium-dependent phosphotriesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="556" mass="62876" checksum="B8FCECB02FFD95C8" modified="2020-12-02" version="1">MASIVTKMLSSIVGLLVNKARDSAADKLKDGDVTDAKIREFVVRELNDVKKKLDGLSRAPLLSSLGFLKQGINLLKVSLINKSMDEQKDVDKPTNEQATSTMSSSVQSEILNEALPLSQAMEKLNIVSQGHFECAKERFKDARTRAFDAFFNQALSIEDRLMAAKLHIVATVLECLESPEHAITSCLSFLEELHGLEAIAEIFSMYLNRGFMSRLNKAQRVECVKSVMLVNYTLFQFVFKFSSKYTSTSAWPTIELAERSFNPILHWQEVSTRKSMGDELTQLPNKSILDEDIIPRYSAVNSHGDVVVGKHPDTIKIIPKTGESKVVKLPEPSEGEVIRQHIVALAVDKNNNVYVVRRLETSAKYFNVKSFVLDVLDENYHVNQDSRTLEYLDATKYFYSAVQIAINKNNNIVVMRYDDPQVYICDNTGKLKHKFEQGVRYPHRLGICGQDEIMIATDNYQAVEIYSEEGNPKSTIKSPEGHAVRGLAFHYVICKIIVLTYVEKKDSYFLLCYTEAGELETTTFFSERIDIKDWPRIKSHPSGPVAIVRQKSITFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LKJ8</accession>
    <name>A0A6S7LKJ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">THAP domain-containing 9, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A087105</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024144">
        <property type="protein sequence ID" value="CAB4038383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LKJ8"/>
    <dbReference type="OrthoDB" id="6760869at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048367">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47577:SF2">
        <property type="entry name" value="THAP DOMAIN CONTAINING 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47577">
        <property type="entry name" value="THAP DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21789">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="26"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="2">
        <location>
            <begin position="190"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H C-terminal" evidence="3">
        <location>
            <begin position="387"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4038383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="506" mass="57408" checksum="56479846A5387308" modified="2020-12-02" version="1" fragment="single">AYEYVRSIIPLPNPSLIRKWSSSVDCEPGFLQEAFQSLQSEADKTPSKKDCGLIIDAMSIRKQTLWDPKKEQYSGFVNYGPVPPEDPETLASEALVFILVGTRNRWKCPIGYFLADKMNAKTQAQLVRMALEKAADAGLRVWSITAHGTSVNVSTFTQLGCIFGTTYDSMVTMFKHPSRNYNVYVILDPCHMLKLARNALASLGSFYDSDGGEIQWKFFHLPHNLQEDEGLNLGNKFSAQHLQFQKHKMNVRLAAQTLSSSVANAIEFLDVSMKRPQFKNSGPTIKFIRNIDRAFDILNSRCPRAKGHKQPLRPKSKDTWEDYLKSTAEYLLSLVGKQGKNKEQELLSTHRRKTFIVGFVATIKSTINMANEMFSLKENPFAYLLTYKFSQDHMELLFSCIRSKGGWNNNPNSMQLKYALRKMLFTNAVKASKNSNCVDFSEGFSSGIIPILHKRKHRSPLIEEEKPENDSGFTLTEQLLVEQLAERGHSEFMGNILFHISAFIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LNP1</accession>
    <name>A0A6S7LNP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021362">
        <property type="protein sequence ID" value="CAB4035779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LNP1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043758733" evidence="2">
        <location>
            <begin position="21"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="17497" checksum="B15484FAF6F427A6" modified="2020-12-02" version="1">MNRAILCLLGMTAMVVMCSSEPLEKRQFGNWEELFPGSSEMSLAENNEPDQYPEDSKKKTKSSSKGDSGNPGSDRAEDTKKVCFKECRKIKKSGKTAACNEDEIAVGCQGTGVRGCKVSQAYGGQGCAISKDSCGYDFVMKSKKAPVITAVCCKRNAVQIQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTP2</accession>
    <name>A0A6S7LTP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006469</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034369">
        <property type="protein sequence ID" value="CAB4044252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTP2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012934">
        <property type="entry name" value="Znf_AD"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51915">
        <property type="entry name" value="ZAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="484" mass="54705" checksum="4CC42455AD3696F5" modified="2020-12-02" version="1">MSAMNVNTPTKKVTRSKTKPSEKVPDDFCRVCKCSFQLKKIAWFKFNKEENIDGTNVLLASLCKSVCGFNPKYNDCLSNRVCKSCGRKIHNLGLFCKQLKESINQAHEQFGNTTNSSPGSDRYKRELPTSVTPERSPAHRKQQKSEQKASRPKSNIQRRTLSFTDKAGKHCEDEEFNLLNIEEFNDSPKTEIKVLLVRPCGVTLRTVPDRDIANMVKNLVLKRWKAVANAIVKHEKILLELAPVVGRKVSEEFKNLSKSDSVLKGTDPRQLETFSNKLVLEETSLYLPIWNACIRGACGVKVNESPGKPVTNSIVLATSVAARARNRTMSAIAYRISVVLYHGGLSYQASLRLFHLGICMHPESAIGLQKRMGKDHDAKVLTWKKDLETDILPLKLMEEIRERQIPCFQADDMVIERSVDLSETSVNNKTCPRYFDAEALKLITNVLNAAECKSQTRLIGEHYSEEVFEDAFSEIARTKTSRYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DE15</accession>
    <name>A0A7D9DE15_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054863</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000626">
        <property type="protein sequence ID" value="CAB3983549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DE15"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19456" checksum="9931DA531D7F3585" modified="2020-12-02" version="1">MRKEVEKKDEVVEELSCANEELKSYINCLSKSEGIAYQGKKVSEVKKKRTTLKCFISQARIALWFAESFGLDICSMNVVEKCTGTVHTVSLADTKTMPIILDDKNANALSAKGNNSLAVVKREEKQPLLHIDLDHVVVDELYLMLRIVDVLIDNLIEEVLQWDKMEDLRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH76</accession>
    <name>A0A7D9DH76_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nacre</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A083115</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000745">
        <property type="protein sequence ID" value="CAB3984489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH76"/>
    <dbReference type="OrthoDB" id="10211240at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00055">
        <property type="entry name" value="EGF_Lam"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00112">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.400.10">
        <property type="entry name" value="Low-density Lipoprotein Receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050969">
        <property type="entry name" value="Dev_Signal_Modulators"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036055">
        <property type="entry name" value="LDL_receptor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002172">
        <property type="entry name" value="LDrepeatLR_classA_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002049">
        <property type="entry name" value="LE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14949:SF56">
        <property type="entry name" value="EGF-LIKE-DOMAIN, MULTIPLE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14949">
        <property type="entry name" value="EGF-LIKE-DOMAIN, MULTIPLE 7, 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00057">
        <property type="entry name" value="Ldl_recept_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00192">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57424">
        <property type="entry name" value="LDL receptor-like module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50068">
        <property type="entry name" value="LDLRA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="472"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="476"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="495"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="5">
        <location>
            <begin position="884"/>
            <end position="899"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3984489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1083" mass="123853" checksum="8D93AF44A8AE6574" modified="2020-12-02" version="1">MASKRMILLTIVILLMFGNTTSKISSKSVERIEKGLAGGQKIVEFISKLGDPKTRRVFDSLAKMASFLGAAGGLLSFALAFVPKSDSLELRYMKEKFAKVNSKLDVISSKLDNVKDLITYENQRAVYLDSASKILFGHKQLTAFLNELQNTSCKDEKNCNRVRARIASRYVDDFNVKRHMFKVLNGAIKPTSAFGDPLLNVIRKTFKCDVGKIDHLANSILKLSFKAQQVTLAHEKLRGSNFSITQSMNDWLKSLYNLREITYNIKKQCFDNISSYMISDINDKKYQVNVDSNHQANQEVKNVMQEKYKWLGWVAHSYGAYGGSKHYVQNAYGRFWNMPADKNARKRNLIVSFTDKSGTYSNQKFLVWKAVDQIVAKTNFYSVRNNAGKLLPKVVEELKKEGVWKYVTTLNVLREYDDLVITADNPLTYIDENYRFKSYYPRNKRKNSVILYDNVRLVIILKSMEMANGLPCDKSCNNQGSCRTQPYSSAKYCQCKPYFQGDKCEEHAEAQLAKTIDSLLLQTLKLPYLSDIAFDIKDLREYVGISFGEVRSAISDLEVAFKKAFDNLTRLLTGQFQWSNLITLYNKAIRQIEFYSYRFQKLPKLDRNVRVTEEKLLATAVLAANGIQQWLYEVNFLFLGRTGTPLVKHEPLILVFMNRYRSLACTPAYKAAVDNTWRQLVLLQQMGFIVWAQALQIVGRPTAQVAQLYDARTNTQISTFNQKTCEYSIANSDNVQCTGGRYLYPAMNIMNQCKTNYYITGTKETTCVKKGSGCRACNCNAASSSGTECSDISGQCNCKSGFYGMTCQNRDCVWGRWPAYSSCTKGCDYGGTKTRTRPHKVTKQGQGTSCSGSKTETTSCFNRCCGYQFHCSNKRKCIPLSRKCNYNNDCGDKQDEASCSESCWVKRTSWNNAGGGDMVYMDRHRLTCGGARGIKMFRLQRSGGKIRYEYICCALTSNVCANTRKWNGFTYDGNGDTVYLDRQTISCGNHGYINGFWLQRNGRHNRIRYSYDCCNLRSYQHRARTTCYTSRTGFTYDGNGKSYYLDRQTVRCYDRYFLTYISLERNGKHDRWRYRFTCCKIRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXD8</accession>
    <name>A0A7D9DXD8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058538</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002856">
        <property type="protein sequence ID" value="CAB3996375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXD8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="22970" checksum="4791B94B4E674A85" modified="2020-12-02" version="1">MERVGKKANTIEELEAAVMKYVRNKMKVKHTYEPVCSECGSKSIVIIDGADVCTQCGTSDRNGFTYYVSYNHNKDDYLKKKSSHNRVRWFERHLLEHIASGDRDTIREQFRSIVRCIQRLRLQRGRNIVRYKFYLLRLASMNNIMLRNPPEDIKTQRIVNILEDRLYGKVFPELGWKLINCKYYNNWKLNNIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E2A3</accession>
    <name>A0A7D9E2A3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">DnaJ homolog subfamily C member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A046229</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Endomembrane system</location>
            <topology evidence="5">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003487">
        <property type="protein sequence ID" value="CAB3998995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E2A3"/>
    <dbReference type="OrthoDB" id="10250354at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00167">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.1120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052606">
        <property type="entry name" value="DnaJ_domain_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025561">
        <property type="entry name" value="KSR_SAM-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046861">
        <property type="entry name" value="SAM_KSR1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046933">
        <property type="entry name" value="SAM_KSR1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017884">
        <property type="entry name" value="SANT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44653">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44653:SF2">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23082">
        <property type="entry name" value="Myb_DNA-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13543">
        <property type="entry name" value="SAM_KSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20406">
        <property type="entry name" value="SAM_KSR1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00717">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50090">
        <property type="entry name" value="MYB_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51293">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="270"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="180"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="390"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="532"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="193"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="219"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="537"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="565"/>
            <end position="576"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00037847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3998995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="643" mass="74106" checksum="657063B94B6C5095" modified="2020-12-02" version="1">MASSVESACAPQVNNMNYIQRMIDINASNLDGLRTQCTTSSDLIQQEIRDQEAKLVKLFSRMLEARQQIEAQCTSYFDYHQYPRLEQWLNVVGIASCGVKAIVERYGSFGSLLAAPENQVRDVLENSEANSVEDAWKLVSALSHLRRFTERRKEGRNDRLNDSKTNSNIYSWSYGKENHVQHNSTSSSSQSSIANTDDTPSTPGSDLGVEQANSPRRSPKPEIMKRSKSEDLEVLKDEEKRKRYDIILRDGLPDWRQPVFYYRRVRKMGFLEFLIFIFVIFTVGHFIIAWSVYLERKFELDDVLTSFKKKKEKRNRKLIKQGAVVDEVQVEDILDVEGVHKPTFWDLLPFVLYRLIVSTIRQARMRREYERQQKIRQQLMEEEEKREREKELENLLKPKPRRQRVQQPGVSSEDVAKWEGAPVTTHLARDDDLTRATEVENGMTPGQKEGEWNEEDLSKLSRLMVKYPGGTPGRWEKVACDMGRSVKDITMQVKQTKSMIKDQAVPHQADLTRLVPNKKTTSLDDNIVTQAVREDNNGMSNDHQVKPTTNGVSKQKSEIPEKGYSTTSAARSSTAESSEDDRNAWSQNQQKLFEKALSLVPKDAPDRWTQIARNVPGKTKDECVARYKFLVEMLKKRKRGETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E2I1</accession>
    <name>A0A7D9E2I1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ras-related protein Rab-1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Small GTP-binding protein rab1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A083072</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Protein transport. Probably involved in vesicular traffic from ER to Golgi.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the small GTPase superfamily. Rab family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003753">
        <property type="protein sequence ID" value="CAB4000093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E2I1"/>
    <dbReference type="OrthoDB" id="9989112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00154">
        <property type="entry name" value="Rab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001018">
        <property type="entry name" value="Rab family GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050305">
        <property type="entry name" value="Small_GTPase_Rab"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47980">
        <property type="entry name" value="LD44762P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00177">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00176">
        <property type="entry name" value="RAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51417">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51420">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0636">Prenylation</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="176"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="186"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00053444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00067099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00081865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4000093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22348" checksum="BFBDC9E1A7CB7C2D" modified="2020-12-02" version="1">MSTSNDYDSTFKILVLGDSGVGKTCLIYRYTEGIFSEAYVSTIGIDCRTTMLDVDELKVRMQIWDTAGQERFRTLTSAYYRGAMGVLLVYDVTAEESFSHINSWLRNIDDNASSDVCKVLVGNKADVEDGRVISKERGEMVAQNNNLQFFETSAKTGDGVKEAFKCLAHLIKDLKDSKESSPPDVLNTSLRMQNEQSGSCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E2Y6</accession>
    <name>A0A7D9E2Y6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048981</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003569">
        <property type="protein sequence ID" value="CAB3999354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E2Y6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="82" mass="9291" checksum="3051D92C474C78E7" modified="2020-12-02" version="1">MDQKKRCKTGNTSGKQKAQEDDKNHKVLRIRHKKYMKKFKIQWRLTGQMGSSVKIEVEIAGKLVTMIIDDTGATKTIVNGAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAZ2</accession>
    <name>A0A7D9EAZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035079</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004809">
        <property type="protein sequence ID" value="CAB4004103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAZ2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9004" checksum="6C4398A51BF90EA3" modified="2020-12-02" version="1">MKSALVVLLIAQMIVVPGMTRNVAFNDYLAGRRCPAPACDDENNCYVVCYECQASRVFSDICRECQLCEKQGRRNGLIRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBJ6</accession>
    <name>A0A7D9EBJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Myoferlin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A051038</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasmic vesicle membrane</location>
            <topology evidence="2">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005159">
        <property type="protein sequence ID" value="CAB4005311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBJ6"/>
    <dbReference type="OrthoDB" id="5953065at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030659">
        <property type="term" value="C:cytoplasmic vesicle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061025">
        <property type="term" value="P:membrane fusion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007009">
        <property type="term" value="P:plasma membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04018">
        <property type="entry name" value="C2C_Ferlin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037722">
        <property type="entry name" value="C2C_Ferlin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037721">
        <property type="entry name" value="Ferlin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012561">
        <property type="entry name" value="Ferlin_B-domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006614">
        <property type="entry name" value="Peroxin/Ferlin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12546">
        <property type="entry name" value="FER-1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12546:SF33">
        <property type="entry name" value="SPERM VESICLE FUSION PROTEIN FER-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08150">
        <property type="entry name" value="FerB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00693">
        <property type="entry name" value="DysFN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01201">
        <property type="entry name" value="FerB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4005311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="704" mass="79882" checksum="4CC57710ECE095EC" modified="2020-12-02" version="1" fragment="single">HIILRKWIVLAEPQQSEKIIQGGNVITKHRQPQGFDGQAAGFLKVSMVVLEAGMPAPSLENLAGLTGEDDIESNLLHLPGVSLSPAVFSLKVYKAVDIPQMDHENLLNRLRNKKKDCADPYCVFSFAGKQAKSSVSYNSRSPQFNEKLNISFKYPSVCDKLKIQLMDEDFGTPDDYIGTIFIFVSQLSGQGGNEFLPTFGPCFVNMYGSPREYSDWPSKHEELDKGIGEGAAYRGRVLVELETKLDVSNGLEVEPVGSADDVRVQPYMQTEEFRLLAVFLEATMLAVEDAQVEFELSIGNYGNKLDDSVSPRPSSTPPTNPVSDGEKYYYLPWGNSKPYVRIDCEWEDISFRLGVLNKLLKICRDLERNIYMLKLTASTSGKGHEFKNSICDILGGLKKDCSPLSKPDPKEFKMTKLDLQVHETRQDVLASIVVECEQLESNLDRPEVILILESFLKRIQIIAVEPQNSMPDVIIWMIKAERERIAYCRIPANELLYFNDENERGEKCGKTIDVNLKFPGKEDSSHKSKFAGMLRLMIWFGRKKEQGEWQELKRTGGRLSVYAETFENQNRLGTWSATKYSRPAFSNANGTISLPKDNFQAPEGWEFSGHWEAHSELSTQFRMDSGCKTFLEDVFENEYRLIPGGLWNKNKTQTSWTDGFGKEILDENNKPIQDKYDVKPPRGWKWSRDQEWIIDLDRAVDSNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EE23</accession>
    <name>A0A7D9EE23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 ubiquitin- ligase DZIP3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001948</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005635">
        <property type="protein sequence ID" value="CAB4006889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EE23"/>
    <dbReference type="OrthoDB" id="5969690at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1039"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1039" mass="116670" checksum="08FADB28AA442DD8" modified="2020-12-02" version="1" fragment="single">SFMDGAAAESIAGLSLTNANYEEAIVILKSRFGNKQQIINRHMDIRLNLPSVNSENNLKGLRQLHDTVQSHIRSLKSMGVAPESYGSLLSSMLMSKLPTNLQLVVSRVVKENEWNLDKLLNTLQQKLEARERIKVPAINKDFKKYHGSVSALMAGTNPSCTYCRGSHPSKDCTTVTSPATRQDILRKTGRCFVCLRKDHISPNCKSTIRCYSCKGRHHVSICKGKKPPPPPPRDPPEGHGQRGSNKSKESPSLGTHPDATVCHTTSSNCVLLQTARANIYNPDNPNGPKVNARLILDGGSQCSYVSSALTGTLGLQSKGQRSVNIKTFGSSETNAQVVNLGIETSYGANIEMLAFTVPSICQPLKNQFVSNASKTYPHLANLHLADYSSGQHDAKITTNSKELQERICKTNQLVTVNNVPDGSNIARADILFQELCLAKGDWDHPLEGTLKCNWQKLVENLKEVQPVIIPRCYISDIHEQVVSYELHGFCDASIKAYAAVSPAKENIDNDVVPIECRIEMKVKDQRALDKETLSTMLVHGSKDSISNVINCKDDSSLGRLLRVSAVVLKFIKLLKSRVRQEYPPTNSEVTSSDIEFRISSSSMDQGTAGGNKVEREIQILEPRPRSVTDENGTVRCKGRLSNSNLPYSAKYPILLDTAHYLTTLIVRDCHERFRVKEAPPFTYVGLDYVGPLYVKSTNDLDEKAWICLITCCVSRAVHLEVVPNMTSQAFLRSFRRFTSRRATPLLVVSDNAKTCKDVSKELMTLMRDPQVKKYFLQQRMQWLFNLEKAPWWGGFFERLVGSLKQCLKKTIGKPRLSYDELVTAVTEAELILNSRPSSYVSSEDVEEPLTPAHLLSGRRILSLPDRHQENPEDEDFQVDLSTNDLNKRVRYLNDIIDHFWRRWRNEYLVELRNAHKSPKKTVEKSSVEVGDIVLVHDENHPRSFWRIGRIKELVNSTADGKSRGAVVQVMSKKGKVTTLRCPLQLLYLMEINCKLAKEEVQSEQENGAQESTESERLRRRAAIAGELLIRHWIKDMNQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H6V3</accession>
    <name>A0A7D9H6V3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072636</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000027">
        <property type="protein sequence ID" value="CAB3977058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H6V3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="449" mass="49947" checksum="413AA9CD3FFA8E4D" modified="2020-12-02" version="1">MYGDDPIVLTDLKSELDYVKDLMERRAIEETTFTEGNDGTVNISGPSGSTTVPEVNFVEDPNNVLPDVLDAFNESFDADWDEIEARLEKLKKFSEDRLTANKKRDFENQVERVQAVARVIKGKEGLVLDPKNRYVRELIKRSSVRTLNDGTEVLVFRSEQGIDKSGTQIMKRGKTSKLVYSKNSIALREYKELIKKIKEVPTNPDDIIRSDESIYEDTREEPQFDGSDEEYADRENIELIDISAKLGDLPGLTMQENNELRGVLNPPDGSSIEGRTGPNGALQIQADYFNEAIGETVERATSAEGTTEYNSLLERIDSLREARDRTLEQRTIEEAREAQLEDISRLRKFIDWVGKEKVGLVGIAVSTASLITALLIHARGALVKTGKATGKVAKALANLAKKAGPILVPILNAIATALSWGAKGIAWLASHLWVLVVAASLIIYNYYTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H7Q8</accession>
    <name>A0A7D9H7Q8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A004228</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000070">
        <property type="protein sequence ID" value="CAB3977778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H7Q8"/>
    <dbReference type="OrthoDB" id="5987862at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031037">
        <property type="term" value="P:myosin II filament disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903013">
        <property type="term" value="P:response to differentiation-inducing factor 1"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04515">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992:SF2">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3977778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="427" mass="47947" checksum="D63DB11CD8F01118" modified="2020-12-02" version="1">MAAKKQDTWDVFREKMKDKRCKKGQPAVNKKGLSAGDLIVRNGELVVQRLSSEVSGKAQKYSRIGAREFVPFNEEVSIHAIKAACERHYKSLSEEGLKCDVLAGDQGPSCLSMEHVRDLKVVHVRFIKPQINRPSTSFVSKGIMREENPAFSFMSECVHLRESPDKRKIKSERCSSSAAKRPAPKSLTVSQMIKLGKLIKPSVADTTHTMIIDVFSFDFSSGFRKAYKASSNTAGFEGKDWVVKRYLEKVVNEVTNDLGQSMEEQTKKVVQMHHLSKNFADQLSKTVKQKNICEKFGPVMQFQMVYFGKIQGTGECITIERYIKGEFVKYVNNTGELCVSSGHLLGQKAECLVHFSYEKSNHQLMVLDLQGSSHMLFDPEVASKKLVGEENEFMFCAGNLSADAIKTFVQNHKCNKFCQLLGLNSIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H7W9</accession>
    <name>A0A7D9H7W9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger MYM-type 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A028560</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000070">
        <property type="protein sequence ID" value="CAB3977781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H7W9"/>
    <dbReference type="OrthoDB" id="1739706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF37">
        <property type="entry name" value="OS05G0311600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="2">
        <location>
            <begin position="131"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="738" mass="83744" checksum="E60F84CB68FA1155" modified="2020-12-02" version="1">MNKTLLDYFSKKRKKSNNNEGESRESQESISEMSVSGESIDDDSTNTTIDTDHEHRDSRSEALRDTGTTVTVISHPSGLNLQHEDRGQVQENIHGPQLPQNDHSGKPNFFDNKEGPCQPYLKAYPASFVSLNNDQKQWLFAVFNVSRFLCANGLAFRGSDESDIDTGDGLFLRAFSQLLFPLEEKWGKIHKNLPKNAKYTSHDIQNEVIEVLASLVKTKIAEDVRKAELFTIMADGTTDKNRKEIQGIVCRYLSSDGNVKERCINVKGIDDRSAKGIFKFIKEALVQFNISVDGLVSQSFDGASVMSGDYGGLQRLISDFCDRNVLYVHCFLHKIHLVVSFLMQNLDEVKEYFDTTAALYKFFKKSAVLESYNGTALKRLIETRWSGHFESTSHVHKNYGDLIQALMVASKNKKLSGEDRAQATGLLSLMEDNEDHVFVFITCMLMDVLKPIDIVVKQLQSPDENLISALHVVNAVKDDIKSKRENNTSNEKVKKMVDDFLESVRITSTDGVQVQRRPTRNTAVPSRFDDFLITDRIPSANNSRTNCQIFVECLDLLDAEFLRRFSEENIALWEAMLALSPSSDNYLDYDALIPLFEYAVNIPVIRDFYQKEKLSREHLEAECRIFSRVFKDKEWPKNAADKVDLSEVANIVIKEHQKGAPVLSSLYKVAITAGFTSTRVECVFSSLTRVDSPQQRSMKTEREANLAYLSFESEVLINDITFDDFYKAWNLKPRALSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9Y1</accession>
    <name>A0A7D9H9Y1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CxC5 like cysteine cluster associated with KDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012723</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000104">
        <property type="protein sequence ID" value="CAB3978323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9Y1"/>
    <dbReference type="OrthoDB" id="10011386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041539">
        <property type="entry name" value="CxC5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18718">
        <property type="entry name" value="CxC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxC5 like cysteine cluster associated with KDZ" evidence="1">
        <location>
            <begin position="160"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="727" mass="83230" checksum="5D7FCE93021569A1" modified="2020-12-02" version="1">MAQSKKKRTSGMFDFDNMLSKFEEEKRNLNTVRERLKAVNEVDLVRLMSDACVLMEDEALQLLAAKLSIEGLLNLRNAVQHVPKNIPRVVNGVSLRSTFMFTTFKSLPLQHMGIKNMSMEDFQTYVKFVETYCPIFLSEKKECDNLWKLTQAQDLPYNKFLTPPVARCVQCQKDLTVRNNPSKAKLFTLEGPIPCTKITLECRCCAYVYGICNYSDESGSRFYPSTYNIELIEVSNVTYFDVKLYKWFPSLSGFAEAYNDVHEVQIRQYGSSMSRCINDIDDGLGGEPELENKNYPEELDKNLGVLPGELSPKAISQCFWHREVEEELASHGLREEWIFSSKEHGPTCGTYESAMEVIDKKRCEHLYMHDCSDQCKSKGCGQLYVADGNWKLRYAHCMWKVPVLISGFGKINYPSICPLSPRRGHAFCEAHCVKAIQLGFPTELREFYKSCGVSDRNINEALEEMSSKALLTESSYESVANCLDEFAKQSVDEDAVNASTFQGTADFLKTNPGFVEDQSLVEDISCNKDTGGLKAFHCWSRGVFFIVSGGGHIEYWQPLYRSESPTQAFLVTILWLYRKFKKLQEEGQCDESICDAMSSVCLAYDNMCHMDSLLIARDDLPLPKPLNKAWKLISKVIDRLHLRNHVDKKCQELYNPDDKLPKHFNTMACEQTFIWASRFKKVICAMPQIHQFFFLHRLVKYRNKYTEKCHRNSKTPILPKLGKAAGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HA30</accession>
    <name>A0A7D9HA30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">N-sulphoglucosamine sulphohydrolase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A077180</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the sulfatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000111">
        <property type="protein sequence ID" value="CAB3978423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HA30"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016250">
        <property type="term" value="F:N-sulfoglucosamine sulfohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006027">
        <property type="term" value="P:glycosaminoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030200">
        <property type="term" value="P:heparan sulfate proteoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032506">
        <property type="entry name" value="SGSH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43108">
        <property type="entry name" value="N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43108:SF6">
        <property type="entry name" value="N-SULPHOGLUCOSAMINE SULPHOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16347">
        <property type="entry name" value="SGSH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase N-terminal" evidence="3">
        <location>
            <begin position="26"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="N-sulphoglucosamine sulphohydrolase C-terminal" evidence="4">
        <location>
            <begin position="228"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3978423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="316" mass="36974" checksum="D0E2A19AB963741F" modified="2020-12-02" version="1">MGIIEDWKPTHYDPSDVVVPYFVQDTIAARQDLAAQYTTISRLDQGVGLILDELKSSGFEDSTLVVYSSDNGIPFQVGYCYFSYKGRTNLQEPGMSEPLLVSTPFHEEYWNTRSDALVSLLDITPTVLDWFNITYPTYKIFGPNPVNLTGNTLLPLLQERESRVQQEWDTVYASHSLHEITGYYPMRVIRKQRFKLIHNLNFLMPFPIDQDFYISRTFQDLLNRTRKHIDTHWFMTLHDYYYRPRWQLFDLQNDPKELVNLAGKTEFQDVFESLRRELHQWQNVTYDPWICAPDGVLENEGAFSPMGTCLPLDNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HHX9</accession>
    <name>A0A7D9HHX9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A040282</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020000798">
        <property type="protein sequence ID" value="CAB3984885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HHX9"/>
    <dbReference type="OrthoDB" id="5976830at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02178">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B mitochondria/virus" evidence="10">
        <location>
            <begin position="821"/>
            <end position="1039"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="47"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="143"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="255"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="47"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="146"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="165"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="183"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="202"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="298"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3984885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1131" mass="129889" checksum="D436AA539D9C81BB" modified="2020-12-02" version="1">MATNFDMNNMTVEQLMALSEIVDDSDISDFEDEVEKITKDEFYRVAPKDKGKDPFEGERLFIDEGDRSTDPRRARRRPLNKKGERGIMPTWKYSERQKARALLVEEAYQSLLSQGVEGLPPTMGGRWRTDDPQVNAEMKRLENIRNPKRPRGRPPKAKSDAKVAIPKKRGRPAKAKVDTKVVIPKKRGRPAKVKSEAEVVIPKKRGRPPKVKKKSVAERFMSQNKIKLSIPADSVITQVGPNKYTVTVDLSKRPTRKAPEVPKGVTPWRPVPKPRTVFPRERPVPKPRTVFPRERPVPKPRTRKPVPPPKLRKPVKVMKEVEEQPPVVAPQEHEIDPFGTYLEKPSYRKIETAANGAAVTYSITPNFMDPLDQMTASRQVVRGILVNELRRMGGLKYTETIKVRMSKEIGNDKTKKDSVYFKSKTGTATNFEDIESTAAQNQLTILSRIETFQNLGSNWIILNIESHYVNIAMYKPLKGSSYMKLPADISNPKCSLINMQNNDNKCFMWSHLRHVRPRARRATTITRQDREFAKNLDYEGIDFPVKISDIDKIERKNSISISVFGYKGKKQFYPIRNSKTKYDEHMELLLLGDNEGGNHYVLIKDVNRMLFSVSGNSNKKHFCLHCLHSCVSEESLEKHRETCIEVNGTQATKLPSEGTKIKFKNHRNSMPAPFVIYADFESILVPEERKLDSEDPEDKSTTELYQTHKACSFGLKTVCHYDDQYSGEYISYVGEDATVVFLKTVLKESIKRREMVNKIFKKKMVITPEQEAEFWVTRNCSICGNDLGDNRVRDHDHVTGLYRGAAHNMCNLKYRITWKVPVVFHNLRGYDSHLIMQEIGKFKMNINVVPNNMEKYISFSLGKSLVFIDLIQFMASSLEALVSNLSPEDFKIVGQRWQGEDFDLVRQKGIFLYEYLDDISKLDTEGLPSKDKFYSSLYESEVKEEDYQRALKVWDHFKMKTMRDYHDLYLETDVLLLADVFENFRKTCLENYKLDPAHYISAPSLSWDAFLKQSGEEIELVSDMDMFQFFEKGMRGGRIGEEEDCWDNSDYPKDSPYYSAHNKKVIGKFKDEAGGVPIVEFVGLRSKMYSYVKESGGGGMTAKGVKKEVLKLQTREQLPSDSAVPNPVNYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQ31</accession>
    <name>A0A7D9HQ31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001706">
        <property type="protein sequence ID" value="CAB3990677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQ31"/>
    <dbReference type="OrthoDB" id="5989585at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038822">
        <property type="entry name" value="Vertnin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16081">
        <property type="entry name" value="VERTNIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16081:SF0">
        <property type="entry name" value="VERTNIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="24736" checksum="A66E6F666F442A9C" modified="2020-12-02" version="1" fragment="single">SCELAFSILSFVKTLTPLIDQERENKMLIGVTFNIDDEIARGDFPLSITRFNEVETSYSKTSLFVMSLSVDVSNGNNAMECLRQQVIHTCYPGNWSGLIHMMALSSVIKCPVFSVYPESSSAIRPFFHGLIRPRDAGSSICNDLVHIMFTRDCLLNNRQGAVFQPNHFCPVFQSGNSDGIAFHGSGASFQTSSFVPDVQSTKEFPPLGFENKDKKNDIHSFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQQ0</accession>
    <name>A0A7D9HQQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gamma-tubulin complex component 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024401</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001323">
        <property type="protein sequence ID" value="CAB3988440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQQ0"/>
    <dbReference type="OrthoDB" id="5960936at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22572">
        <property type="entry name" value="GCP5_NTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059169">
        <property type="entry name" value="GCP5_N_ext"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="163"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="29002" checksum="C45C9BEEC89A99D7" modified="2020-12-02" version="1">MAPIALKDKRIEELTKQLVKRFITGELAKKNVPVAVQFALSNFRYHKYLDADSNKVDRTIEGLCEKFTIHGQEHKSKSLSTLVEKFMSCALFDKQYGEKSDVHYALLKFLTVLSESPINAVYHQPHADQPEDVKDNFNWTKYLLEGEEKYIVHYYDTHEEEFWSDLESEDESDNENDQVLEGQDLDEDERKQLQVINRTVRHPEINGVTKEVRDILCENLVEAYWLTNESSRVAEETSEMSLASQWYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTT6</accession>
    <name>A0A7D9HTT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retinol dehydrogenase 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A065887</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001343">
        <property type="protein sequence ID" value="CAB3988561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTT6"/>
    <dbReference type="OrthoDB" id="47007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43391">
        <property type="entry name" value="RETINOL DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43391:SF86">
        <property type="entry name" value="SHORT-CHAIN DEHYDROGENASE_REDUCTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3988561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="31217" checksum="C5B43DAC8EDB37B1" modified="2020-12-02" version="1">MAQRVVIITGCSSGIGLDTAVLLAKTDDGKKFKVYACMRNLAKKGSLVEKAGDCVDKSLFVLEMDVKSESSVNAAIKHVLDTDGRVDVLINNAGVGCTGALEYHQVDTIKNVYETNVYGVIHAIRAVLPSMKTKKSGHIITVSSVGGLVGVPLNAVYCSSKFAVYGLSESLATELAQFNINVSLIEPGPVATEFGSSVMSKGIDGLENGDDVTKGLINKVIQAFQKNRVERGQTGDDIAKCILKAIEDEKPHLHYITSKAYEEVLKKKYVDITGDSVIQASTQRFFPSPAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HX44</accession>
    <name>A0A7D9HX44_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein eL24</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">60S ribosomal protein L24</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A055398</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002365">
        <property type="protein sequence ID" value="CAB3993965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HX44"/>
    <dbReference type="OrthoDB" id="1727108at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00472">
        <property type="entry name" value="Ribosomal_L24e_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.170.20:FF:000002">
        <property type="entry name" value="60S ribosomal protein L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.1270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.170.20">
        <property type="entry name" value="Ribosomal protein L24e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038630">
        <property type="entry name" value="L24e/L24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056366">
        <property type="entry name" value="Ribosomal_eL24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000988">
        <property type="entry name" value="Ribosomal_eL24-rel_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023442">
        <property type="entry name" value="Ribosomal_eL24_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011017">
        <property type="entry name" value="TRASH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10792">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10792:SF1">
        <property type="entry name" value="RIBOSOMAL PROTEIN L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01246">
        <property type="entry name" value="Ribosomal_L24e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00746">
        <property type="entry name" value="TRASH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01073">
        <property type="entry name" value="RIBOSOMAL_L24E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="TRASH" evidence="7">
        <location>
            <begin position="6"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="88"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="116"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="127"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="6">
        <location>
            <begin position="145"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00040612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00041213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3993965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="18224" checksum="5BBC14233FC0094F" modified="2020-12-02" version="1">MKLEVCNYSGYKIYPGHGKRYIRLDGKCFYFLDKKCERSFLMKRNPRKISWTVLYRRKHKKGSVEEVTKKRTRRNVKFQRSIQGATWENIQAKRNQKPEVRKAQREQAIRAAKDKIRQKKEVKKLTKVQQQPSKSKAPNKQKGGKTTGRVGGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I847</accession>
    <name>A0A7D9I847_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003901">
        <property type="protein sequence ID" value="CAB4000708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I847"/>
    <dbReference type="OrthoDB" id="166212at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030552">
        <property type="term" value="F:cAMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007283">
        <property type="term" value="P:spermatogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23011">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-BINDING DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23011:SF43">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-BINDING DOMAIN-CONTAINING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="cAMP-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="668"/>
            <end position="706"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="668"/>
            <end position="677"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="753" mass="87551" checksum="D256764162164A90" modified="2020-12-02" version="1">MNKKDRGKSDSVFSWNDQSANVRTVTWETGKKLNIKMYEKNWKTVKSLMTVRSRGKKSLQSTRYVRQLRYSLDMDTPENTDQEESEEERQIARELLLARFKNVVTKEYDMTFVAKVKEHDEQHCFQIMLLRSVFVNVLKYAMEKGGHEKITSDPRLRLKVNHAQLRTEQDIAFDPEQFKTDYQGYFPKWAKEIALKAPGDRTDKEIDTLNKILKQLKEFRRYTPEIQRLLCKVVRYDRFGRHRVIIRKGHVGRRFYIIYSGTVAFTLSKDDCEVFSRPTEYYNLGKGDAFGELALIRNVKRSATIVCLQTTEFLYIEKEDFTEMGVVDILRREMEIRVEFLREYDLFSTWSQDVLQKVAEESRSMEFGNNVVIDNNLLQTDMLYVVIEGRCQVLRLLDLTQRKKWVNLRRNQKKLCSSEFPETSSTPYSRQGTYSRLSGLSNVTGYNERMIPRTFSQPQPPPTEKHVQPRLVKSAHCCTVTQRRENVVKEVKRASYPCTSQERRDRSANSRIQFEQTKVGVGVFLSLDIIEKGQSAGLQGVVRTDEDRLLGSNTDKRHLYLVSKGCFIISIPVESVRKHADYKTIQKIQKRVKAYPSDEALLDCYLDTTRWNAYKEVLMGRMIKDIEKRRCERKPGSMVPGMAPVKQEQTYSCVISRPGTQRTIYGRSQSTLSQQESIPGKRQARLPRSVCSPSPTIPKPSPEIGGEYPFKPTATIYAQGSRRNLVIVNGRIRTNTIQEEVEEQLLNRCVQVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9II20</accession>
    <name>A0A7D9II20_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Fascin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A049032</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Cytoplasm</location>
            <location evidence="1 6">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the fascin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005401">
        <property type="protein sequence ID" value="CAB4006070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9II20"/>
    <dbReference type="OrthoDB" id="10259868at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030674">
        <property type="term" value="F:protein-macromolecule adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051017">
        <property type="term" value="P:actin filament bundle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016477">
        <property type="term" value="P:cell migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007163">
        <property type="term" value="P:establishment or maintenance of cell polarity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd23334">
        <property type="entry name" value="beta-trefoil_FSCN_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd23335">
        <property type="entry name" value="beta-trefoil_FSCN_rpt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd23336">
        <property type="entry name" value="beta-trefoil_FSCN_rpt3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd23337">
        <property type="entry name" value="beta-trefoil_FSCN_rpt4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.80.10.50:FF:000008">
        <property type="entry name" value="Fascin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.80.10.50:FF:000010">
        <property type="entry name" value="Fascin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.80.10.50:FF:000015">
        <property type="entry name" value="Fascin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008999">
        <property type="entry name" value="Actin-crosslinking"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010431">
        <property type="entry name" value="Fascin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022768">
        <property type="entry name" value="Fascin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024703">
        <property type="entry name" value="Fascin_metazoans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10551">
        <property type="entry name" value="FASCIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10551:SF9">
        <property type="entry name" value="FASCIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06268">
        <property type="entry name" value="Fascin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005682">
        <property type="entry name" value="Fascin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50405">
        <property type="entry name" value="Actin-crosslinking proteins"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="3 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fascin-like" evidence="7">
        <location>
            <begin position="15"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Fascin-like" evidence="7">
        <location>
            <begin position="133"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="Fascin-like" evidence="7">
        <location>
            <begin position="254"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="domain" description="Fascin-like" evidence="7">
        <location>
            <begin position="387"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR005682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF06268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4006070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="54298" checksum="DEBC22706BB4B388" modified="2020-12-02" version="1">MAGVEAYYVGLVNFQNKYLTAESFGFQVNASGVHLKKKQMWLVEQDASHIFLKSHLGRYLTADKHGKLSCEAEEREDDAKFTVTYQADGKLALKSKYDRFLGGEDDQINAFATTIGKAESWTLQLAIHPQVNLLHVVRKRFAHLESNEVQVSEDIPWGADALITLEFKNGKYGLLTSDSRYLNADGSLDEKLTEKGQYLIEFHEGRVAFRTHEGKFLTCVGNKGKIQSSKKDVAGRDEVFSLVDNHPQCMLTAQNERMVSIRQGNEVTANQRFDITDTEIFQMEFDPKKPGKVCMLANTREYWIANGDVKATSSDRVDSAFFGIDWHGSHVSFQAASDKYVTIKPNGKLAPTSESVGDKEKFLLQLINRPLLILRGEHGFVGMRGPSTARLECNRSSYEVFKLHFEDGKYKLEGRNGKFAQIDGEANLNLSGTSEDCATFQLEFREHTKMCIKANNGKYLKGESNGAFTANGEKLAKNTLWEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IK20</accession>
    <name>A0A7D9IK20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011789</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005856">
        <property type="protein sequence ID" value="CAB4007627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IK20"/>
    <dbReference type="OrthoDB" id="5984829at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22052" checksum="FBC940915F62589F" modified="2020-12-02" version="1" fragment="single">RDRTEGNTAFQVVGVDYAGPLKRLSPSLFFDENGETREGKAYIILFACSLTRALHLDLAKSMEMEEFLLSFKSFVARRGRPEKVYSDNGRTFVGAASWIKKVRSSEKFNDFLAHQGITWQFNLSKAPWWGGQFERMVGLVKGALRKSIGKSLLTFTELKEVLLDVEVALNNRPLSYVEDDIQMPLITPENGIVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9INF1</accession>
    <name>A0A7D9INF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059556</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007281">
        <property type="protein sequence ID" value="CAB4011835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9INF1"/>
    <dbReference type="OrthoDB" id="5961805at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098">
        <property type="entry name" value="RAPSYN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098:SF108">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13176">
        <property type="entry name" value="TPR_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="13"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1054" mass="116313" checksum="9260824EAFC3A598" modified="2020-12-02" version="1">MGDTYHASGEYHKAIDYHKKDLEISTGIGDRSGIARSNRNLGNAYASLGEYQKAIDYHKKDLEVSTAIGDQSGIARSNGNLGNAYDSLGEYQKAIDYHEKDLEISTAIGDRSGKAGSNANLGNVYHILGEYQKAIDYHKKDLEISTAIGDRSGIARSNANLGSAYHRLGEYQKAIDYHKKDLEISTAIGDRSGIAKTNGNLGKVYDSLGEYQNAVEYHKKDLEISTAIGDRPGIARSNGNLGNAYDSLGEYQKAIEHHKKDLEISNAIGDPSEIAKTNGNLGNVYDSLGEYQKAIDYHKKDLEISTAIGDRSGIARSNCNLGNAYESLGEYQKAIDYYKKDLELSTAIGDRSGIARSNGNLGNAYHSLGEYQMATDYNKKSLKISTAIGDGSGIARSNANLGNAYDSVGEYQKAIDYHKKDLEISTAIGDRSGIARSNGNLGNAYHSLGEYQKAIDYHKKNLEISTAIGDLSGIARSNGNLANAYDSLGEYQKAIDYYEKDLEISTAIGDRSGIAICRGNLGISHRCLGEYEVATFHLIESISFFDEMFLESVPEQNQLTFVKQYFISHTILMSCFLLLERAESALLVIDLGRSKELHCCIEKRRNSVDKDLFDYARAIWNRIEAREEQIEIEGLQTLLHLGKNDTSILVFAFDWEGFLNTWVLAEKVIFRKVLDSRRETFYLLIMELLGRVNVKVDRNSSFYILDSVANTNNQVMSLFEFPSAMPASKNAVVNPASYNDFSDQNILEMLFKLLVDPVIDIVKGNKLIIIPDPLLFFAPFSALIDENGSYLSNGYSVQISPSLHTLKCTMEQSFDSNFGFALFVGNPTVGKVSLNGKDVTPADLPNAAEEVKCLSKFFKARPLLGREATKQVVLQLLTGASIIHIAAHGEPTRGEIMLASNSSLTGQCSSVGKPESYLLTQGDILNISVQARLVVLCCCHSGQGEITSEGVVGITRAFLAAGARCVLATLWPISDYATKEFMEKLYGELCQETPVCEALRRTMNFFQTHGKEEYRSSWIWAPFTIYGEDVKFGKDEIEKIREKSHGFFSGFVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ITM9</accession>
    <name>A0A7D9ITM9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008393">
        <property type="protein sequence ID" value="CAB4014655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ITM9"/>
    <dbReference type="OrthoDB" id="5876637at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026680">
        <property type="entry name" value="CCDC137"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21838">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21838:SF2">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="150"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="161"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4014655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="27647" checksum="B057DCC6ED64DED8" modified="2020-12-02" version="1">MGRLSRHRKVKSCDPFFKGQKDVDISSNAPVQASQLDSQPVPRKANDLFKDGQKIKLKGKKGKRGKEKKNRGKLDVQRRPGETRREFYQRLDKQAAEEVNKILVKEKRVSQKRKEFLKTRKASKKRQNAMQEDEHKEFITDKVKFGEVVNEPPSFTARPKHAGDEASRKTKMDSLLLQNKLKDQGHQDEHNKPQTLPKSKKRKHMNAFEKQINDKRRLDAIAAYRKIKKKHMQENAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J4C7</accession>
    <name>A0A7D9J4C7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin carboxyl-terminal hydrolase 8 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073554</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011579">
        <property type="protein sequence ID" value="CAB4021708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J4C7"/>
    <dbReference type="OrthoDB" id="292964at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02257">
        <property type="entry name" value="Peptidase_C19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.395.10">
        <property type="entry name" value="Adenoviral Proteinase, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050164">
        <property type="entry name" value="Peptidase_C19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001394">
        <property type="entry name" value="Peptidase_C19_UCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028889">
        <property type="entry name" value="USP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018200">
        <property type="entry name" value="USP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00443">
        <property type="entry name" value="UCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00972">
        <property type="entry name" value="USP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50235">
        <property type="entry name" value="USP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="375"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="691"/>
            <end position="722"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="179"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="210"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="220"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="285"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="691"/>
            <end position="720"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="847"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="847" mass="97964" checksum="33C37685D29DCF80" modified="2020-12-02" version="1" fragment="single">MRNLKQDDFPGRSRLRPDAFVLENYQRIRRRGNDYGDRIASKRGQKRKKSNERIESTRRDVKKQKVNGNKRKENKFEAKERREQFSKPATNPAVKVKDLSNSDEDAETEKNYSTKQKVNGNKKKKNKFEAKERREQFSKPATNPAVKVKDLSNSDEDAETEKNYSTVQETWGKKDALTPKQNPKISQFQQSPTMSLSKKNNERIESTRRDVKKQKVNGNKKKENKFEAKERREQFSKPATNPAVKVKDLSNSDEDAETEKNYSTVQETWGKKDPLTPKRNPKIGQFQQSPTIPLSKTPDVKKKNNLKKKPSSAFFNFLHSRGKKHRAAERRKIPELAKEAGELWRHLPQGDKDRFKETSEKEGTKVKEFQPGKIKNPSKKGHLNEMNRENGQSVQSKGERNVSYPSSNQYRGLINKANHCWMNCLVQCLNASNMKEFLFSLCSPTIHPLIDALVNTLKKLNGNNHQPYYPGKLYKSFINEFGYVQGRQYDIHESLTSLSSVSLSDNSKIADLFSGLHQYDKTCLNCYKRENIHAEKFFSFFIPLDQDITNLVDSLHDSLTDVVEMFCEVCNKQTHHFRNGYLLELPTTLVVTFKRFQIDEDQREKNHATVSLPRHFSLNAGENYRRYNLTSCALHYGQRIDCGHYTAVVFDENSVLEINDTVIKDVSSYWEDFVASTVYVAFYSVIKETTNDGRHSKHNKDDSGNSGKKDDAPKYRHTNENDCDECEQQGETCAQPENNNSSPNEEQIFRLWDVSNKDTKICTMTKDGYDLYGKDFKSLEYPLINKSYIVPNTGWLNDAVVDAYLTLLVKECAKNGTRYFAFNTQFITKLRCICSPRRQKEFHTMIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8M3</accession>
    <name>A0A7D9J8M3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024143</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013057">
        <property type="protein sequence ID" value="CAB4024477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8M3"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36191:SF11">
        <property type="entry name" value="BRCT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36191">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="18008" checksum="8C02F1C535998A8E" modified="2020-12-02" version="1" fragment="single">MCETRKSTLRYEHNSNLNYIDNQQDRLVPAIRGFKIASLNITSLPKHIDELRICMNDKEIDVLAINETRMDDSVPIESIAIQGYNWISKNRNRSGGGIGFFIRDSINFRPRTDLNNHDIEILTIQISKHNVKPFLITTWYRPPNDPIDTLIDLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JAC1</accession>
    <name>A0A7D9JAC1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062937</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013611">
        <property type="protein sequence ID" value="CAB4025455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JAC1"/>
    <dbReference type="OrthoDB" id="5971197at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617:SF3">
        <property type="entry name" value="CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35617">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="29218" checksum="AB8651F263BD4C6D" modified="2020-12-02" version="1">MATTITLRQYAVPVAISILSVLYRKLGHQSSLYIDDSLRTGQTYDDCAANVIDTTQLIDNLGFIAHPDKSVFIPTHELDHLGFTLNSSNSKTMQVTITPGKKLNLIETCKELLTKEYPSIHEVARCDNASATESPRRSSLRDPSDPILANTDMVAESNEHDCPTANCLTKKQGTIISPQPTQQNIWDMSIVLNHLKQSKIAKELLLKDLTLKLVMLMGLLSGQRCQTLQSLSIDSMKLGDDECVFPINKLLKTTKPGSKPLKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JC71</accession>
    <name>A0A7D9JC71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014414">
        <property type="protein sequence ID" value="CAB4026803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JC71"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="29064" checksum="8B7EDD611C4C32E5" modified="2020-12-02" version="1">MSKESKMTREVYDAVLLTAGAVGISIASKKILKEPLGTPENVKGMVKLAVSVSLSSLLVSYLKEKKNGYAEETHRHNKAMENLTAEREKYLEEVTDRRNRIAQLKSELADAIRDIKSTNQSLELVRRINELTRKPMPRKPQLSNHYKPSSEMEEYMALFGLITGGVMVTPEEIAHVGKRANTLEELEAAVRKHVENRIKRKYTFDPICSECGSKSIVMIDGADTCTQCGASDMNNFSYYVSYNYNKDDYLKKKSCHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JK91</accession>
    <name>A0A7D9JK91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023776</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017310">
        <property type="protein sequence ID" value="CAB4031031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JK91"/>
    <dbReference type="OrthoDB" id="5978872at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954:SF3">
        <property type="entry name" value="PROTEIN CBG08539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954">
        <property type="entry name" value="RETROVIRAL PROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="323"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="328"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="45677" checksum="DF01FE8A11D93CE7" modified="2020-12-02" version="1">MDDLTKKKRVGGGHGASASKLVAKIMEAIPKASTESPEKDLVWLRQSQITLRDNKMLKELDEQVIDIFIASKDEDVDEQLGKEIEDSGEAIAELEKTLLQLDDALGKLGGQSLPLLTPTNLTSAEGNLDQSHVSISSAGKIIRAKLPKLRLRNFGGKICEWPEFWDGFSSSIDNNDQLSDVDKFAYLRGYLEEPAKSTIAGLSLTGANYKCAVELLKKRFEKKSAVQRAHVNELIQLPAVYKERDTQRLRKLYDSCEANNRALKALGVNEDSYSAIVFPTIMERLPEQFRLTITRGQNFLEWSMEEMLNAFEKEHELREAHNAVGTNSDREQERHERNSGDIKKYGQHHHGTTAALLANERRGNCAFCLKNHNNEDCEGVKDPRTRKSLACKYGRCFLYYYCLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRN4</accession>
    <name>A0A7D9JRN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myb X</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A088394</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020242">
        <property type="protein sequence ID" value="CAB4034591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRN4"/>
    <dbReference type="OrthoDB" id="5978437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="16613" checksum="D762BDF8FE51244D" modified="2020-12-02" version="1" fragment="single">MRNEPMNNVTIDLQYTDLRLTTFILMAVGKGFLDQYSVFCVFGSVVGCVVVPLITQSIESVIFSAIVISLTATHLSKRAVSTDSSNKLHSQAYIKEASLRKTKDGNSSKKKSPKKAVAQGEIQVRTSDYRQRKEEKIKRIEEARKLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JXJ9</accession>
    <name>A0A7D9JXJ9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FP protein C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066266</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022539">
        <property type="protein sequence ID" value="CAB4036906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JXJ9"/>
    <dbReference type="OrthoDB" id="5971624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057251">
        <property type="entry name" value="FP_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25298">
        <property type="entry name" value="Baculo_FP_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FP protein C-terminal" evidence="1">
        <location>
            <begin position="137"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="22866" checksum="F2BFED22CE7FCF79" modified="2020-12-02" version="1">MEISSCLKVLEDKIKSIDDLVDEQDDIQQYIRRDCVEITGVPMLPVDKPKEIVKEIGQLMGIEIADHQISTAHRLPPTRKVKDKLIVKFVHRDTKDLFYKKRSKLVGKKSNDLPLVKREYENNNREFNNIYVNESLTARRRKLFGRVNEFKRSERWKHTWTINGKIMLREEDASRVFSFVHARDFDAFLNESF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K3I2</accession>
    <name>A0A7D9K3I2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger CCHC domain-containing 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032137</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026802">
        <property type="protein sequence ID" value="CAB4040447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K3I2"/>
    <dbReference type="OrthoDB" id="10233731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="184"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="328"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="430"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="510"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="204"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="235"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="445"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="466"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="520"/>
            <end position="531"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="578" mass="62524" checksum="721DBE4F2B27A7F1" modified="2020-12-02" version="1">MASRPFTKEDFAKWNTTTSVFHVPKRLVGKGKIPQLRADFVKAIGADRVSAVQILPNHKVRVQFKSPSIRVRYEINGLSFKGVTLTPFPAYEEVKSVFVDRAPLQMADNYLYEALAPYGRVISVQHLTVRGFPTIKTGTRMVSMSVNTPIPAELKVAGFTLAFRYRGQLPTCYVCQEVGHTAKECPKSRKATRKQPVRNQTGAQSASSSNSKPSQQRDVPPSTSKESPASSKPPADLREKLNKARASEEARKVQPPRTPVLREVQVAFEKSPRDLRDKLIARRNATPLAPSTQAFDLDLSVSLPKTATSSSSMVTDFGRKVTAKPGKQLEVVVSNPAAAARKQGKSRHVSSSSEESDDSLAEMSVTPKPRSKRVKRFEQSHTPSGHGAWCSNNIAASLGQTNNTTEDCLDGSTVIDPIAPLDVIHTDDAEEMEAQSAPVPELPPTVSSSVFGADNPSTFVAESTADSVSPSDPHCHSCPPQDIPLPEKVTLEEANSNCGPLTEDDMLFDFESDHSGSDVESLSGASTTSSLAEAAELTEHLLQDAGNASHSLEDAATLWQALDKVSAEKEDVSSSLDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K3T9</accession>
    <name>A0A7D9K3T9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E2F-associated phospho</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051487</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026195">
        <property type="protein sequence ID" value="CAB4040047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K3T9"/>
    <dbReference type="OrthoDB" id="122464at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019370">
        <property type="entry name" value="E2F-assoc_phosphoprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15967">
        <property type="entry name" value="E2F-ASSOCIATED PHOSPHOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15967:SF0">
        <property type="entry name" value="E2F-ASSOCIATED PHOSPHOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10238">
        <property type="entry name" value="Eapp_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19084" checksum="58BB60EA39263557" modified="2020-12-02" version="1">MNYSKSSKQLRIRCKSTTNTSLVFHHFLEPTSSINETAVNVNGDSEQKTKAKKKLSSTKNLTSDAILSCPACLTTLCIDCQRHDIYKQQFRAMFVMNCKVIADETLRYEAKKQKKKSSKKNKELLPDVSLEQQELYNPVQCTSCNTEVAVFDKDEVYHFFNVVESLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K6W0</accession>
    <name>A0A7D9K6W0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059116</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029817">
        <property type="protein sequence ID" value="CAB4042281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K6W0"/>
    <dbReference type="OrthoDB" id="2802215at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="38"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="204"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="688" mass="78077" checksum="280E340F3989D4B4" modified="2020-12-02" version="1">MTAVYIRNRCFNSRLGKTPYEALTGKQPNLSNMHIFGSTCYAFVQNVKKLDDRSRKGVFVGYDKDSPAYLVYHPETNKVEKVRCVKFFDNFETEPEASNDNQELIVPNKEHVETTVNANELPQQMDENAGTAEVENNAARYPTRTRNKPRYLDQPIIDDNVNRTVDYCFRAVDIPKCYKQATKSLEANKWQNAMNAEVSALNDNNTFELVPPPKDRQIVGGRWVYAVKIGQNGEETHKARYVAKGYSQIPEIDYQETFAPTARMSSIRALLQRVVQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFIQSQADPCVYVRMIDSKRCVIVIVWVDDIIIAASHFELLTTVKESLGERFKMKDLGKLSWFLGTEFKCKESCIEMNQKQYIEKVLLKFGMADCKPKPTPCVLGIEKVSDEESPSLKDPGEYRAIVGSLIYVMTGTRPDLCYIVTKLSQKMSKPTRANLDLAKHVLRYLRGTSEQGLTFRKSNVPLRLNGFCDSDWGASVADRRSITGYNFQLSSTGPLISWKSRKQPTVALSTCEAEYIALANAVQEAKLCIDMKVSIRDDNVLIQVDNQGAINLARNPVHHQRSKHIDIKYHFIRSEIQVGTISLKYVPTEDNIADVFTKPASKDAQNIRASGGVRICS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KX14</accession>
    <name>A0A7D9KX14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060746</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011777">
        <property type="protein sequence ID" value="CAB4022051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KX14"/>
    <dbReference type="OrthoDB" id="10063923at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF19">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18736" checksum="6988AFCA92D2CA25" modified="2020-12-02" version="1" fragment="single">MATYQIPAPEPMNCNGDVANNWKSFHEAYEDYLIATGLDQKDKKVQVATLKSLMGTECKKILKRLQLSEADMKDPAIILAKLQLAEPCNFGTLEDQMVRDRLVLGCRDSAARTRLFREKDCTLKKAIESLRISETTSEQLKKIEREDNQEPVNYAQRQDAKKQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L0T7</accession>
    <name>A0A7D9L0T7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012226">
        <property type="protein sequence ID" value="CAB4022925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L0T7"/>
    <dbReference type="OrthoDB" id="5983986at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DUF5641" evidence="1">
        <location>
            <begin position="620"/>
            <end position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="689" mass="78536" checksum="AA2B1BF32F9CA2F2" modified="2020-12-02" version="1">MERVDMGDTPAPAISTGAIYKTADRFKEDSPEAAGLLTKSSYVDDLIDSHTTVSCAFKVAEEAENMLAKGGFSVKCWQLSGEESPRKTARGVNTEESGKLLNMLKGTESNLRVLGFGWDPRSDSILYEIVLNFSKKKHGVRTDPNLNADDLPKALPEILTKRIVLEQVMKINDPLGLVCPFTLRAKVYLRKVWSRKLGWDTPLPADITAKWIPFFMTLLTTQRCRRSPMAYISSLAMEVIWRTDWLTRGRNPDELAEDSEWWNGPPILYQPIESWGLKFGLQKNEALPGEKKIRYNATAVSEIPDIDYKKSSNVDRIIWMLARILSMARHKSFREGSTLHITSQLLKDADVLVVKDVQKEQNDEIEKMDQKGSRYASLNPGKDEHGYYVVGQRLKNNNPMTPDASLQKLLPTHHPVTRLFMERAHKQRVHRGRDSTLARFRQKYWIAQGSKIAQTVKSKFYGYETSFFLLALSRFARIRGWPEFIYSDPGSQLIGAERELKEAWEKIDRSELHKSGLQNGLTWQFGSSDSPWYQGAVESLVKADKRAIVFAVGKRRLTVPEFLTVCPEAANLLNERSIGTLPSLDSDLNVFTPNSRLLGRSTVNNPRGRQPFTYSQSPKTRYSLVQTAVEDFWEKWIQLYALSLVVRRKWHVNTRNLRPGDVVMIADKNVMRGEYHFGVVKEVFPDQDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L337</accession>
    <name>A0A7D9L337_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055246</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012818">
        <property type="protein sequence ID" value="CAB4024061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L337"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="75" mass="8301" checksum="90513608BBB81560" modified="2020-12-02" version="1">MDIDYSNESSSDGSGSSGSSYSEDMNVERDVNMIQPYAFEPVETDSSGDHEDSEEMASESSSNSYKTPRLQDTNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L365</accession>
    <name>A0A7D9L365_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glutathione gamma-glutamylcysteinyltransferase 3-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014859</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011789">
        <property type="protein sequence ID" value="CAB4022078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L365"/>
    <dbReference type="OrthoDB" id="448954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016756">
        <property type="term" value="F:glutathione gamma-glutamylcysteinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098849">
        <property type="term" value="P:cellular detoxification of cadmium ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010273">
        <property type="term" value="P:detoxification of copper ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046938">
        <property type="term" value="P:phytochelatin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.70.30:FF:000001">
        <property type="entry name" value="Glutathione gamma-glutamylcysteinyltransferase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.30">
        <property type="entry name" value="Phytochelatin synthase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040409">
        <property type="entry name" value="PCS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007719">
        <property type="entry name" value="PCS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038156">
        <property type="entry name" value="PCS_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33447">
        <property type="entry name" value="GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33447:SF2">
        <property type="entry name" value="GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05023">
        <property type="entry name" value="Phytochelatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51443">
        <property type="entry name" value="PCS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="211" mass="23774" checksum="64E6138B9D3B1CD7" modified="2020-12-02" version="1">MATPKKEYYRKPLPSSCIDFASTEGKNIFKEALNEGTMDCFFILSSQFRTQDEPAYCGLSTLVMVLNALSVDPGKVWKAPWRWYHESMLDCCVPLEVAKKEGITLFHFSCLAMCNGLDVDMVQALPTATVVEFRDVVKRVTQCESQVLVCSYSREVLGQMGDGHFSPIGGYHSGRDLVLIFDVARFKYPPHWVTVDVLWRAMKGLIVDLGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L4W8</accession>
    <name>A0A7D9L4W8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033283</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013530">
        <property type="protein sequence ID" value="CAB4025303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L4W8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="26761" checksum="FEABB7BDBA395B51" modified="2020-12-02" version="1">MAMPSNKSPGPDKIGMRVIKDCLPIILGPLTHMINCSLMTSTFPDLWKISEVIPLLKEGDHEIASNNRPLSLLEVVSKVCEKVVLNQFSSYLKEFNRISSHQSGNRSLHSTETLNIFVTDTMLEAIDNKNLTALILLDLSKAFDSVSHSILLHKLSCIGTSPEAVKWFQDYLTGRSQYVRIGSTKSSAHPITHGVPQGAILSPLLFCIYINDLPGSIQSCNLDSYVDDSKLYKSFCIYDLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L5J1</accession>
    <name>A0A7D9L5J1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]</fullName>
            <ecNumber evidence="9">1.3.1.88</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A002907</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>5,6-dihydrouridine(16) in tRNA + NAD(+) = uridine(16) in tRNA + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:53380"/>
            <dbReference type="Rhea" id="RHEA-COMP:13543"/>
            <dbReference type="Rhea" id="RHEA-COMP:13544"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
            <dbReference type="EC" id="1.3.1.88"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="12">
            <dbReference type="Rhea" id="RHEA:53382"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>5,6-dihydrouridine(16) in tRNA + NADP(+) = uridine(16) in tRNA + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:53376"/>
            <dbReference type="Rhea" id="RHEA-COMP:13543"/>
            <dbReference type="Rhea" id="RHEA-COMP:13544"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
            <dbReference type="EC" id="1.3.1.88"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="11">
            <dbReference type="Rhea" id="RHEA:53378"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>5,6-dihydrouridine(17) in tRNA + NAD(+) = uridine(17) in tRNA + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:53372"/>
            <dbReference type="Rhea" id="RHEA-COMP:13541"/>
            <dbReference type="Rhea" id="RHEA-COMP:13542"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
            <dbReference type="EC" id="1.3.1.88"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="10">
            <dbReference type="Rhea" id="RHEA:53374"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>5,6-dihydrouridine(17) in tRNA + NADP(+) = uridine(17) in tRNA + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:53368"/>
            <dbReference type="Rhea" id="RHEA-COMP:13541"/>
            <dbReference type="Rhea" id="RHEA-COMP:13542"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
            <dbReference type="EC" id="1.3.1.88"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="13">
            <dbReference type="Rhea" id="RHEA:53370"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the Dus family. Dus1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.88" evidence="9"/>
    <dbReference type="EMBL" id="CACRXK020014388">
        <property type="protein sequence ID" value="CAB4026760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L5J1"/>
    <dbReference type="OrthoDB" id="272303at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017150">
        <property type="term" value="F:tRNA dihydrouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02801">
        <property type="entry name" value="DUS_like_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035587">
        <property type="entry name" value="DUS-like_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018517">
        <property type="entry name" value="tRNA_hU_synthase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11082">
        <property type="entry name" value="TRNA-DIHYDROURIDINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11082:SF5">
        <property type="entry name" value="TRNA-DIHYDROURIDINE(16_17) SYNTHASE [NAD(P)(+)]-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01207">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01136">
        <property type="entry name" value="UPF0034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="DUS-like FMN-binding" evidence="14">
        <location>
            <begin position="22"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00038313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00038890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00049467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4026760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25428" checksum="757AC016D0444325" modified="2020-12-02" version="1" fragment="single">MPAKYKGYEFYEKVLKKPRYIVAPMVDQSELPWRILSRRHGSELCYSPMYHASVFLREPTYRKAALATCEEDRPLIIQFCANDAETLVNAALLAEPHCDAIDLNLGCPQGIAKRGHYGAFLQDEWDLISKIVSLAAEKLSVPVTCKIRVFEDIQKTVDYAKMLEKAGCQLLTVHGRTREQKKELSGLASWDHIKAVKENLSIPVFANGNILYFNDVQRCLDYTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LCI0</accession>
    <name>A0A7D9LCI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sacsin isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059661</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016577">
        <property type="protein sequence ID" value="CAB4030030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LCI0"/>
    <dbReference type="OrthoDB" id="6007857at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058210">
        <property type="entry name" value="SACS/Nov_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF047352">
        <property type="entry name" value="P_loop_sacsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46919:SF2">
        <property type="entry name" value="SACSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46919">
        <property type="entry name" value="ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25794">
        <property type="entry name" value="SACS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sacsin/Nov" evidence="1">
        <location>
            <begin position="10"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13265" checksum="CDEB1E1BACBA6A42" modified="2020-12-02" version="1" fragment="single">IKKPFGQKEPPLTDQIVNILGRYPDGGQILKELIQNADDAGAREVKFLYDGRSFGKTYLATEHLQKYQGPALYAFNDAIFEPEDWEGIQNLMRSNKKSDILKVGRFGIGFNSVYHIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LEB8</accession>
    <name>A0A7D9LEB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcription factor 12-like isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A055924</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018947">
        <property type="protein sequence ID" value="CAB4033098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LEB8"/>
    <dbReference type="OrthoDB" id="10034090at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051098">
        <property type="entry name" value="NeuroDiff_E-box_TFs"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11793">
        <property type="entry name" value="BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11793:SF13">
        <property type="entry name" value="PROTEIN DAUGHTERLESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="69"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="117"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="207"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="14"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="124"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="143"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="208"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="268"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="290"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="308"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4033098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="331" mass="35192" checksum="CFFEEC196EB4C7DD" modified="2020-12-02" version="1" fragment="single">DHGSPDPWPHPNSIGPTATTYNPTSGLAPPYGLYSHHGPHHEPITYMGREAYERMTTLPPMSSFHQEAMQNQRYHHASPVSSPLTSNDPSVLAQVSRSGSGSQAIGKALASIYSDSTTNYSSNPPTPIASPPPLTSINDRPLSAGSSSSAPGSWPRPNLQAMPSPPGPYESHLHSLQSRMEERLDDAIYVLRNHAEGQFPREFHAQMGAPVGVPGYPAGSVPSSLTGNASSVVDSVSNSTADRHVTTSSSANRNPRIPESGGSKNPKKQTSVSTAGSTTSNALTSAVSQLEDELSEGSGDEFGDDNFEEGHTGGKQVRETERRYANNARER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LGF4</accession>
    <name>A0A7D9LGF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016521">
        <property type="protein sequence ID" value="CAB4029955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LGF4"/>
    <dbReference type="OrthoDB" id="449345at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13248" checksum="D04498B44064CA10" modified="2020-12-02" version="1" fragment="single">MKLSLSNARKTVVKTINTPGRQRSSQSIPNNEKDYFFRHGKIPKSRSEKLMGESFQRRKQVKVSLEFLNEAKRILDIVNEKYQSGDRYLDEVFGEQISQAEATKYLVDYLQSEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LKH8</accession>
    <name>A0A7D9LKH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020808">
        <property type="protein sequence ID" value="CAB4035190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LKH8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="23786" checksum="787AC456F9646AEC" modified="2020-12-02" version="1">MNDFQQDSVDSSDSDPEFYKCVSEKLGIRAVKGQNTSNILLPVYICGTKIIVDPDACADVDLISVKDFKKIHEANPEIKKQIKKPKQKIYALNGEELEVIATIKDAKLSNKNAEILTDLYVIEDGIHKFPFLSERTLMNLGMIKYSAEGEFVKKVDARQSNDKERKCKPEDKVPQEELRKILQKHKKMFQGIGTLRILKQESQSSLISR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LNT4</accession>
    <name>A0A7D9LNT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022498">
        <property type="protein sequence ID" value="CAB4036867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LNT4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="106"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="116"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="13356" checksum="9AA7939E7ACACC44" modified="2020-12-02" version="1" fragment="single">SLVPSASSLHPIYAVAPVSDHEQQTLPSRTYTPSVQPLSSLKAPVYASAGREVPTQAGLDFGSSQQPQRVEQSLSEFAVAGPSQVVPLTPRIASLHLQLSQTRQPSSPPYQPPVVGPSYVPQSGSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVR4</accession>
    <name>A0A7D9LVR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074690</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023056">
        <property type="protein sequence ID" value="CAB4037411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVR4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19699" checksum="CC85A99628B10BC0" modified="2020-12-02" version="1" fragment="single">RCWTNCGGRCWTICSGRCWFICCGRCWIICCGRCWFICSGRCWINCSGQCWIICSGRCWIICGGRCWFICSGRCWFNCSGRCWIICSGRCWFNCSGRCWFICSGRCWFNCSGRCWFICSGRCWIICSGRCWFICCGRCWFNCSGRCWIICSGRCWIICSGRGWVNCSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M241</accession>
    <name>A0A7D9M241_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029497">
        <property type="protein sequence ID" value="CAB4042112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M241"/>
    <dbReference type="OrthoDB" id="6379273at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="27"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="29320" checksum="003F1FBC62D379E4" modified="2020-12-02" version="1" fragment="single">MKWNVLVLSQSMKSQALGVIQSLLHLRKKDSDELRICIDFTHLNKFIQREFHPSNSPFEAVTSIPAEELKYFCKFDARHGYWQIPLHPESRPLTCFITPFGRYVCNRAAFGISSISEWYNRRVDKVVNGLQGIRKIVDDVLVYAPTLSALKKRVHAFRCSTHGVILKRSKSQIAVTEADFGGFHLSELGIQCSSDLLKSIRDFPRPKNLTDLRSWFGLVNQLGHFSQEITQIMEPFRPLLQKNSCYLWLPEPLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MBX0</accession>
    <name>A0A7D9MBX0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035082</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036526">
        <property type="protein sequence ID" value="CAB4044847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MBX0"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="19532" checksum="17FAA226C3403D3D" modified="2020-12-02" version="1" fragment="single">MKSLYCALVRSNLEYASEVWSPKSITLIKKIERVQRRATRILLPELEYVERLQQFDVPPLLHRRELKDLTTFYRMKQGLYNCNVDSYVEFCSDTRLRSTAQGKLKTPKCRTEHFRATYFNRIMYLWNNLPEQIRTFNGSVAIFKRSCREYYKTIPYDPDRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MIK0</accession>
    <name>A0A7D9MIK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A024116</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020047760">
        <property type="protein sequence ID" value="CAB4046220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MIK0"/>
    <dbReference type="OrthoDB" id="5978526at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4046220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="11222" checksum="16CF9B137D266CA6" modified="2020-12-02" version="1" fragment="single">QPFRNNAALTEDVRQYNKAMSSVRISVEWLFGEITKYFKFVDFKQQLKIRLSPIGKIYIVSAILQNSLACLYGNIVSEYFEINSPTLENYFWRADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FHI5</accession>
    <name>A0A6S7FHI5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003682</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000129">
        <property type="protein sequence ID" value="CAB3978618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FHI5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="88" mass="9638" checksum="B1F7851866EBD24A" modified="2020-12-02" version="1">MEQADYVKLLKGAGVRYKGTSLYTLPGKASTVEQRAAGKICAPPQLNPVYAPNPKIQRVGKITPRAPKQHQQRGNPQISPEILKLIYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FHN0</accession>
    <name>A0A6S7FHN0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Agrin-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A043755</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000164">
        <property type="protein sequence ID" value="CAB3979065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="88467at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00104">
        <property type="entry name" value="KAZAL_FS"/>
        <property type="match status" value="42"/>
    </dbReference>
    <dbReference type="CDD" id="cd00110">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="CDD" id="cd00198">
        <property type="entry name" value="vWFA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.60.30:FF:000040">
        <property type="entry name" value="Agrin, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.60.30:FF:000024">
        <property type="entry name" value="Transmembrane agrin"/>
        <property type="match status" value="19"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.60.30">
        <property type="match status" value="45"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023011">
        <property type="entry name" value="ATP_synth_F0_asu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003645">
        <property type="entry name" value="Fol_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002350">
        <property type="entry name" value="Kazal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036058">
        <property type="entry name" value="Kazal_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001791">
        <property type="entry name" value="Laminin_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012314">
        <property type="entry name" value="Pept_M12B_GON-ADAMTSs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050653">
        <property type="entry name" value="Prot_Inhib_GrowthFact_Antg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10913:SF45">
        <property type="entry name" value="FOLLISTATIN, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10913">
        <property type="entry name" value="FOLLISTATIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07648">
        <property type="entry name" value="Kazal_2"/>
        <property type="match status" value="45"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00054">
        <property type="entry name" value="Laminin_G_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02210">
        <property type="entry name" value="Laminin_G_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="35"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00274">
        <property type="entry name" value="FOLN"/>
        <property type="match status" value="33"/>
    </dbReference>
    <dbReference type="SMART" id="SM00280">
        <property type="entry name" value="KAZAL"/>
        <property type="match status" value="45"/>
    </dbReference>
    <dbReference type="SMART" id="SM00282">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100895">
        <property type="entry name" value="Kazal-type serine protease inhibitors"/>
        <property type="match status" value="45"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00449">
        <property type="entry name" value="ATPASE_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51046">
        <property type="entry name" value="GON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51465">
        <property type="entry name" value="KAZAL_2"/>
        <property type="match status" value="44"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50025">
        <property type="entry name" value="LAM_G_DOMAIN"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0221">Differentiation</keyword>
    <keyword evidence="5 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0646">Protease inhibitor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0722">Serine protease inhibitor</keyword>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="3906"/>
            <end position="3915"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="4124"/>
            <end position="4133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3979065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="4319" mass="482275" checksum="F6293FE76FD857A0" modified="2020-12-02" version="1">[encoded data, 4319 characters]</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL51</accession>
    <name>A0A6S7FL51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A054943</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000100">
        <property type="protein sequence ID" value="CAB3978257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL51"/>
    <dbReference type="OrthoDB" id="10056446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00229">
        <property type="entry name" value="SGNH_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="81"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="498"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="208"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="81"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="519"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="587" mass="66207" checksum="450DC8C15F649B03" modified="2020-12-02" version="1" fragment="single">HVVGIQAFTYANTPPPGKFTIKGNLKELWDQELKKLQSFVNGVCLKPELNTEDLSCLYREIFTDTSVTNLDGVSLNALDDSDCDDIEENPTSESPKKPGLKSPSTKSKVKSFRQIKVISSPRRKLYKKSATPHIEQKQILDFMEKTNSRINKLEQFALKVDKVIASTDVDIIDIKNKLSNIKKDLSESLNSGMKHELSVIKQAQTNDRDEINNRFAKTNAELKRLQGRVGSLVDEKANLLKRIKYLEESNSKPQEDISSSVDNISEAIPRNETTCTESTFIHTTQEENPNSTTQENLIEDGTSLLDDGHIPVHTPEYDFVFLCDSNRKFINADQLYPKGKNKIIACGTTDKAIDILTWPRFNVKHGIIINTGVNDLEHLSTQEVTEKQQEMVEIATQNFPNKKIVMSSITPRCDQLDRSVFEVNKAVAKNIRNILNVFLVDNGNLRCDQQSFHFDDKHLNRRHGIPLFAKNLKDGIRRALGIPVRKPADQTRTRNYPKEKTHNVHNPRSYSDAVINGSPAITPQTQSNPALSDVQHQLFDLTSMIRQLVQTNTNFPAPQQPILCPPFPTPGLVYGAPHFGIPPRQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLA1</accession>
    <name>A0A6S7FLA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009351</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000008">
        <property type="protein sequence ID" value="CAB3976696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLA1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28515" checksum="4411A89BADC75E5D" modified="2020-12-02" version="1">MKDAVSNILEQFNNHFGKYPKFAQFDQGTEFYNKEVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDLTDNYNSSVNRSIKTTPDSVNESNWTEVWKTLFSHNLGKPSEPKFAVGESVRISKYKSVFTKGYEANFTEELFTVTEVYHGHPNTYTIKDSADEPIIGRFYEQELYSAEGREPDFKIEKVLRRKTVKGKKMALIKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQE4</accession>
    <name>A0A6S7FQE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peroxisome proliferator-activated receptor gamma coactivator-related 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A072946</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000237">
        <property type="protein sequence ID" value="CAB3979877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQE4"/>
    <dbReference type="OrthoDB" id="10047851at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034605">
        <property type="entry name" value="PGC-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15528:SF11">
        <property type="entry name" value="FI18188P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15528">
        <property type="entry name" value="PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1 PGC-1 -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0010">Activator</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="174"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="365"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="437"/>
            <end position="559"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="184"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="365"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="398"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="445"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="505"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="537"/>
            <end position="554"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3979877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="716" mass="81677" checksum="1749BDABCF543238" modified="2020-12-02" version="1">MAVSLEPRLPTKISSTVENADEITKTTLDHVKRILNDHDYLKHPAPDGVNYENTSIVMDEPHVGQKNVQSDIQDHSGPCSSHDSKVERVGELPNEGIQANDLCSLLDKFEEAIGNSTSILTPATSPGRSESLCEPLSVKINSHVNATDLTPPTTPPIHEQPEQKHIQNDWKLPAKQKKETSKASVKKNAVKKGTRKAEDAKHTTVNKKAKIPSVISKKVQQKTAKVGIAEHAKQDIKLPERANNASKRKCEDTIADTVPGKKAKMPAENKNKIDIKLSENCQVSKTVLPKTNIDVSERSEVRVKEISVENARNGIDVGHMIEGKSPKVNKDKNMVEPQSNALAESLNGENCPNVGSVAEEKLPKVNNDKKDVKMEQPSNPGVRKSLNDENCSNACDVTEEKLPQLNSNKDDERNEMHNNNNNEIVLKVNTCRTVDNNNLPSIEKTQNKKDLNDGHKDVDHKSKNRNIKETSKRKTERYSEVYQDDRKKRKHRSRSTSTDEDSCEEERCNPRKSERNHESVRHSHDSTRRKEKYRKYSSRDDYDDERRHRKYDDHRHRKPQKYIRDIEHERKIDFRLGRSNIRDVAKEERRVIYVGGLPYGTTRDELWNRFRKFGPIEKVTVHLRVGERDNYGFVTFLEPEDARECIERGNSDPTEPQFDLCFGGRRQFCGGSYVDFDSSTSHIEEQSERHGKVCDDIPEEDDFDSLLRMYQEGLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZN3</accession>
    <name>A0A6S7FZN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038977</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000803">
        <property type="protein sequence ID" value="CAB3984935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZN3"/>
    <dbReference type="OrthoDB" id="10056584at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38681:SF1">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38681">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="338" mass="38102" checksum="A609AA753DDB664D" modified="2020-12-02" version="1">MFGPASTAMYDSGPDHVYNVNAAKFNVTLVHPCQTLRFPSPDFPMSTSISLVLYPLQMAIPTRWPEAIPISTITAESVAQAFITHWIARFGVPHTITTDRGKQFESHLFAALTNFLGTTRVRTTAYHPIVNGLVECFHRQLKASLKATNDPSHWSERLPLVLLGIRTAVKADFGHSVSERVYGTTLCLPGEFFSHSTDHPVLDPAFYVDRLKRTLNDLNPPPDRQQRHKSHVPKDLQTCTHVFIRRDAVRKPLQPPYDGPFKIILRSPKYFKVDLGNCTDTVSIDRLKCAHLDTDPGLPSFTPATHTTSITTEAPQVRRTRSGRHVHFPERYMTIVCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G1L2</accession>
    <name>A0A6S7G1L2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A057644</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000890">
        <property type="protein sequence ID" value="CAB3985605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G1L2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043960917" evidence="2">
        <location>
            <begin position="23"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="85"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3985605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="13088" checksum="664BAF217D280B85" modified="2020-12-02" version="1">MALNILHLPAIVLFIYVCVVTHERNNILYFGDDDGDNGDDDGDNGDDDGGNGDDDGGNGEDDGGNGDDDGENDDNDGDNGDDSSDGSNSSSGEDGSGYNSDGGDAGGSDGNDLGGSDQSHKLLFLYANT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2K1</accession>
    <name>A0A6S7G2K1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000503">
        <property type="protein sequence ID" value="CAB3982466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2K1"/>
    <dbReference type="OrthoDB" id="5971892at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="253"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="262"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="419" mass="47150" checksum="6747AA8529FF266E" modified="2020-12-02" version="1">MAGKGEAACSSCAMETKYICMRCKVHCCTRCSEMESDEDTPGWKAGKSVGYCEACFLRKLDELQESDQSETSSHCDQGSENCSGNFKQQLEKKIERLKELVNDGSSDEEEEDHTRKEKIEKEKKGKEKKKPGRKSTWSVEAIDNFVDIIVNNNYYQKKLVFTNTKNQKNGEIYEKILIELKERSAERGEVIQFTVPQLRTKFKKCVSECKQAALTMKTATGIKRFQEERGFGKWFNALFALVKSRDSCKPELALEPSSLEKQSTKDTSNDDGKEGLFVPVKKKQKVKASDKLNEAAIEAINVVKDTLKNDPTKDLIAFMREEMDKSRDHELKLVGLMQGFRQSNTPYQIPQHLPSFASMPCGEGPPPSTTSYPSWNIAIGSHTQPAAYQNSDVSYSTITGSQPTTSGIHCDGKKTYQKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G550</accession>
    <name>A0A6S7G550_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026964</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001115">
        <property type="protein sequence ID" value="CAB3987068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G550"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13644" checksum="5EB0451C092DDD1E" modified="2020-12-02" version="1">MSVLQLEENKKSLKKSMVWSKAKDLILLKEIAAEGVMSNKPRSRERGMQWQRIADNITALGQGVTSRAVRDHYNVMAKKYRARMAQEERSTGEGGAELTEAESLLEELIHIEREMERQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GYA6</accession>
    <name>A0A6S7GYA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070191</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003023">
        <property type="protein sequence ID" value="CAB3997103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GYA6"/>
    <dbReference type="OrthoDB" id="6436989at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17221" checksum="1D53A9B74DECEC32" modified="2020-12-02" version="1">MSDIASKRYNRRYHSSETWNVLDDDIILEAKDQKSVTALILLDLSKAFDSVYHPTLLNKLRHIGASPEVVKWFESYLTGTSQFVRIGTSVSSSLDITHGVPKGAILSLLLFSIYVNELPLAPHHSSLNSYVDDSKMSLSFRVKDATDTKEYLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0S8</accession>
    <name>A0A6S7H0S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018628</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001781">
        <property type="protein sequence ID" value="CAB3991057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0S8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="88" mass="10071" checksum="D54FD4E316FDBC98" modified="2020-12-02" version="1">MKFACGIVLLVVIYTTTARFVPFEDVRDVETEDFVKAGERFLELLQKKISEQDARFKKIEEILNTTTLSYGSKLNPGLVKISRQEINS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2L7</accession>
    <name>A0A6S7H2L7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082399</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001683">
        <property type="protein sequence ID" value="CAB3990581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2L7"/>
    <dbReference type="OrthoDB" id="1739706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="336" mass="38456" checksum="7517B2C8D981695E" modified="2020-12-02" version="1" fragment="single">MLQDTEGKLGNYVTGIVLQTRRQFCTLNFDFSECYLLFPVGTVESERNEGEAELEKQMLQSSDCSDSEHNYETGNDELEIIHSKHGNSSNRVTPSGISVLTGRDDPKKQPESSTSLLPTDSKRPSQPKLLKYPVNKSINPKTKKTKSFSSSWYSRFPWLEYSVERDAALCYCCRNFTANKANSAGASAFTTTGYRNWANALDKDKGFLQHERSELHKNSYSNWMTWQKVQEGSEINIIQRLCPDRATVASENREYLRHLLKYVLWFTTNELAMRGDDESDESKNPGKWITFIKLQLEMNPTFRELHNKVTKSKSTDYTSKTSVNGFIEIIADSVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2Q4</accession>
    <name>A0A6S7H2Q4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032771</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001693">
        <property type="protein sequence ID" value="CAB3990621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2Q4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="7098" checksum="7670D6C3E0779D34" modified="2020-12-02" version="1" fragment="single">LRAAMHAGSWKRQEKVSVLKENNMQENVYFDWKDLLVVQHQVYDNMLFNAIYEDLRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H2V4</accession>
    <name>A0A6S7H2V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080390</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003740">
        <property type="protein sequence ID" value="CAB4000045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H2V4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16598" checksum="C70BA5BCDEEBC8D1" modified="2020-12-02" version="1">MAMMKMVHREHALNKMFLFKLLCFIFIWNSDRFGISPADCKCRQELFTQVKGYCYSTDVLSTHHVESLTHCAGQLGLKLETCIGFKYRTTNDNLPNCERFKKMENCSECAATSSKNGGWKFYKAVPTTQVSIIVHARILWSIEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H3Z9</accession>
    <name>A0A6S7H3Z9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SGNH hydrolase-type esterase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003084">
        <property type="protein sequence ID" value="CAB3997376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H3Z9"/>
    <dbReference type="OrthoDB" id="10056446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH hydrolase-type esterase" evidence="2">
        <location>
            <begin position="393"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="275"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="334"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="291"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="334"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3997376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="569" mass="63377" checksum="83D9825CAFA57B1B" modified="2020-12-02" version="1">MSQGDITKINPLSFTNRKLKWLGDFDLFEKFVNDILNIKGEWKVPRGGCKQLKTKDITVRWYENRSVLLDGPMKDEYSDILQRIATISPNNISNLGVDDFADVSPTHMPSLPNINSFMVNTNMSNAELFDFDASQNDSAHFSTNNGATNGFEQTLKEISICVEGNALDDVMNRLNALSNEFEIYKSETTIVLNELVDGYEIRNSQVRDNQLAQENDLLKKANMALKSDVHKLECLLSETSSKLVAAESEKASLVTVIRLMNEDCANAVKDVGDNVRSQTTQPRNPWCTVHTRSENQKGNEVTRLHNQFSSLEDEANELNNNSDFDASVINIDSDIQQPTPSQNMSESTSKSTEPKDDRTQGTSGNSDRVPKKGIALIGDSIIKNISPVKLSKRKVYKFTYPGKTTIEITNELAKINIKPEPSHVVIHAGTNDVPVESIDECVGNMEKLITTAKQKFPNSKIGISGLTLRQDSDLISKIEEINEKVQSLSSKHDVTFISNMSIDETCLNSSGLHLNAKGTAILATHFIKFLRDGQSLSSLRPQKHSRQDFPKNTINHLAELLNAIMNVNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4U3</accession>
    <name>A0A6S7H4U3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Iodothyronine deiodinase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053523</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Responsible for the deiodination of T4 (3,5,3',5'-tetraiodothyronine).</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the iodothyronine deiodinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001882">
        <property type="protein sequence ID" value="CAB3991590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4U3"/>
    <dbReference type="OrthoDB" id="428577at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004800">
        <property type="term" value="F:thyroxine 5'-deiodinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042446">
        <property type="term" value="P:hormone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042403">
        <property type="term" value="P:thyroid hormone metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000643">
        <property type="entry name" value="Iodothyronine_deiodinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11781">
        <property type="entry name" value="IODOTHYRONINE DEIODINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11781:SF22">
        <property type="entry name" value="TYPE I IODOTHYRONINE DEIODINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00837">
        <property type="entry name" value="T4_deiodinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0712">Selenocysteine</keyword>
    <keyword evidence="1" id="KW-0893">Thyroid hormones biosynthesis</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="15135" checksum="155AEEC1FC424318" modified="2020-12-02" version="1">MAKLAKFNEIVRDFNDVADFAIIYISEAHAKDGWAFKNNYEIRQHQSLHERLDAAKHVLARNPPCPVYVDTMANTMKTAYAALPERLYVIDEDKIAYVGEMGPEGYNLDELRRWLAEYRNNARRRTWTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9K2</accession>
    <name>A0A6S7H9K2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Exonuclease 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076597</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002142">
        <property type="protein sequence ID" value="CAB3992877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9K2"/>
    <dbReference type="OrthoDB" id="26491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014905">
        <property type="entry name" value="HIRAN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08797">
        <property type="entry name" value="HIRAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00910">
        <property type="entry name" value="HIRAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="264" mass="30150" checksum="B81AC5E96448AC83" modified="2020-12-02" version="1" fragment="single">VPTTCEDSDSKQVADDEPHEVVVDTVNTPWDIEIISIDDATLPWTIPDFPVVTINFKKVTFKQGDKNNTGLVNGAETFAPTKYTCTKHCTIKLHDEEYTVLWELRPLIQKKTLKKSTTARDESTKPVANKEYLNQVQEKHTLAFKVLGTCFSKERQTNLEMAYECMERNRHVFIDLVPEPENTHDPNAIAVCIMSQDDFEKVGYIPRELTGFIHPLMLTGDMDVCVKSIRFRTNYLRVGYYLTINITKTGLWDDAVVAACKNIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9K4</accession>
    <name>A0A6S7H9K4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A030528</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003656">
        <property type="protein sequence ID" value="CAB3999717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9K4"/>
    <dbReference type="OrthoDB" id="294251at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01265">
        <property type="entry name" value="PH_TBC1D2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.270:FF:000026">
        <property type="entry name" value="TBC (Tre-2/Bub2/Cdc16) domain family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.29.30:FF:000248">
        <property type="entry name" value="TBC1 domain family member 2A isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.270">
        <property type="entry name" value="putative rabgap domain of human tbc1 domain family member 14 like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.750">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.80">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000195">
        <property type="entry name" value="Rab-GAP-TBC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035969">
        <property type="entry name" value="Rab-GAP_TBC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050302">
        <property type="entry name" value="Rab_GAP_TBC_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47219">
        <property type="entry name" value="RAB GTPASE-ACTIVATING PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47219:SF20">
        <property type="entry name" value="TBC1 DOMAIN FAMILY MEMBER 2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00566">
        <property type="entry name" value="RabGAP-TBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00164">
        <property type="entry name" value="TBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47923">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50086">
        <property type="entry name" value="TBC_RABGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="235"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="401"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="353"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="448"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="236"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3999717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="848" mass="95907" checksum="BF3526E77FF4F115" modified="2020-12-02" version="1">MATDLTPQSEAWEELVVPPEVQLGTPPSDGQLQEESTNMDDAENADENATKIKDSSKTKLCGFLGKLGEKGIIKTWKKRWFVFQARSCLLYYYRNPDDTTALGHINISEATFAMNISSGRMDQFDICIANRVYHLQAQDQQTALYWLQQLQGRRREYSKKLTALCHTGAETVPEPSESPGLIATVVSENMKEDDDQIFDSIPAPETVGEDAAKRSPDGRFGGMFKNLANKRHTMFVDSTEQSQPDTLQRSSSMSDESANKRSTIARKRFSVRGSASASVDKTQPACTQCRKLSQQLGVCQEKLEEVNEYAKAEGERVFSLNEFIRETVLEKNTNEGVENSTTPNNHGDNQLYIKKLEKRLREQNEQLANYEKEIAMLREVISSKDEIVMKTTKELATVSISEETNKRKKSQASSESELTPPHDRNNAFSSLGSSGESYRSFLHHIEAIESDEEKVEKLKEALRAYIAQNSFLNSEVVELNKLRKNDTERIRSHIIKNQTQEANLCKIKSKFYFLVQQVNAPVKDGQTGVLPEEIISQLVDEAIEIESQTKKNEEGSNAAFDQYGFYTKLDRGDDDALAAVADKLNRKASVVSDDVRKTSLEVKWENYMMANRNKEFQKTPELKNLIRAGVPHDLRAKIWLKCVNCHVKRTKRVSGSGYYKRLLASKKDSFCPAEKQIGLDLLRTLPNNKYYDKQNADGIDQLRRVLLAFSLHNKEIGYCQGLNRLAAIALLYLSEEESFWALVALVEHVMPIAYYTQTLVGSQADQRVLKDLLAEKIPKVTDHLDTLNIDLSLVTFNWFLTAYVDSVPIEIVLRIWDALLYEGTKVLIVVLGIPEVMFPTACLGFSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBV1</accession>
    <name>A0A6S7HBV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein F54H12.2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037873</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003840">
        <property type="protein sequence ID" value="CAB4000450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBV1"/>
    <dbReference type="OrthoDB" id="9880217at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009263">
        <property type="term" value="P:deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000358">
        <property type="entry name" value="RNR_small_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409:SF21">
        <property type="entry name" value="CAPSID PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409">
        <property type="entry name" value="RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="15"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="52935" checksum="7AE5B2E6397EB69C" modified="2020-12-02" version="1">MTGKGRKKSIKGAAPTKTPIPGPTKKQLTFVQSGMALETMHKDSCMCSKSELDLFSVPPTQVVKEKGFWEDVDPITSISSSDTIEFLCAANSGVYTDLASSYLYVKAKITTAAGGKVGADFQVGPSNLWMHALFSQVEVFLNNKLVTPSNTAYSYRAYIETILNFSKDAKDSHLTSALLYKDKAGKMDAVNPLAQDAHVNTGFKQRHAYTRESKSVAMEGRLHSDLFAQYCYILGAVPIKIKLVRSRDPFCLVSSAEDPNFKVVIEECLFRVRRVNVAPSIILAHSQSLQQITAKYPVNRIDCKVVSVPRGNMSGNQPNIFQGGLPNRIVISMVDADAFNGTYTKNAFNFKNYDITTMGLTVNGENLPGKPLQLKFGADSNYISAFQTLYAGAHKIFDNQGNGITREEYANGYTLFVFDLTPDLCLGDHVQPIKNGNVSIECRFGTPLETAINIMVLGEFQSLIEIDANRNVLCDFNNWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HES7</accession>
    <name>A0A6S7HES7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A058322</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004134">
        <property type="protein sequence ID" value="CAB4001610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HES7"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776:SF4">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="236"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="466" mass="52580" checksum="DA8532908F6AB551" modified="2020-12-02" version="1">MATDDEIGNLTASNLESEDLELAKDSSDPHDYLSSDEINNEDGLTVTDKGNLKWNGSYMGLKNFIMMQQISAEHWTSSGGDCKKCEDSGLIIRWYSSKGSLTFGGEKSKEVKNKLLLLAQNKEEVRTKSSCDKQQDNLHTVQTKPNGPLGAVFTQAAIVEDMTHYIKPTLASNPAEVIVHIGTNDLKYKSPRTLLKMVDNLGEMITESKDVKLTLSEIITRCDDETLADKLNITSLTKHTDELRILITEMNFDILCINETRIDKTIKNSEIGLQGYDLTRRDRNRRGGGVAIYIRNTIPYVERSTIIPENVEAVCIEVRKPNAKPILISTWYRPPNSNSEILDSFEIFLQNIDTENKEIIITGDFNIDLMPSETENSKAKRLKELLNTYQLSQLIKKPTRTTESTKTLLDLIICKTDDPKPATTDVVELGISDHNLVYTCRKVGICKQKPKIIETRQYHKLNNAKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HKF3</accession>
    <name>A0A6S7HKF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A088541</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002716">
        <property type="protein sequence ID" value="CAB3995721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HKF3"/>
    <dbReference type="OrthoDB" id="5986877at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051458">
        <property type="entry name" value="Cyt/Met_Dipeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43270">
        <property type="entry name" value="BETA-ALA-HIS DIPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43270:SF4">
        <property type="entry name" value="CARNOSINE DIPEPTIDASE 2, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3995721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="778" mass="87659" checksum="AF8C99F496A73423" modified="2020-12-02" version="1" fragment="single">KLKNSNPERWWKEVKAIGGLSSKKSWYSQLFSDDVRNCEDLAKNFNNFLTALTSHFDPLTLDEIQEGLEVPNHYLVDAQQIYRKLSKIKTTKSPGPDMFPKKILKTFAFELAPVMSDIFNSSMTQGTFPKALKRSIVVPVPKVSPPKSIEDDLRPISLTSQIAKVMEDCTLDNFFPEVVNKLDTKQFAPPKKSTTHALVYLLHSILVALERGSCTARLFFADFKKGFDLVDHNVIIKELTLLGTHPSIIRWIKAFLCDREQCVRLGTSMSSWKKTNGGLPQGTKLGPLLFAVLINSLLKNWPSRIKFVDDTSALEIIPHFSSSLMPLVVNEISDYALERGMELNYKKCKQMLINFLKYKGSDDENPIYVAGVWISNDLSWNTHVDMVLKKANSRLYALRLLKKAGLQASDIVQIYISFIRSRIEYASPVWSSIPKSLSDILESVQKRALRIAYPDLLYDEALEISNLQYLSTCRDISCKKFVESLRRDVSPYNPLTQIMEIRPGVKTHDYDLRNDRTAEQPSWTYFVGSVCLFCRYEAMSDLVALFSTLIDEKGNILVPGVNDSVRELTSEEEALYANLDFDMATYQAELGAHGLTTEDNKNTLMRRWRYPSLSIHGFEGAFSGPGDKTVIPKEVTGKFSIRLVPDQDPAKIGELVIAHLKKVHRERGSPNVLTPRHSEGFARPWLGDFENVVFEAGKRATNDVHGVDPDYTREGGSIPVVLTLSETTGKDCVLLPMGRSDDGAHSQNEKLNISNFQNGMKLFAAYLKELAISTRGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNV7</accession>
    <name>A0A6S7HNV7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050364</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005164">
        <property type="protein sequence ID" value="CAB4005333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNV7"/>
    <dbReference type="OrthoDB" id="5972177at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="172"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="35648" checksum="B95D5B967A0A22D6" modified="2020-12-02" version="1">MGGDTNVLKPATVVLKSYTGNEIKCCGEDNMKVKVGEQVSDIKIRVVEGPSLLGRDIMTKFRLPWHNIFSVAPTTAEDIIQQYPELFDERGVGKLKGVQVSLSDNPVFMKPRVVPFAIRKKYEEELEKLVQSDIIEKVEHSEWASPTVPVIKPGGNVWICGDYSGTINQAATLEQYPVPTFIELLTNLSGEKKFTKLDLSQAYHQLELTPESRKYTTINTHHGLYQYKRLVLGVNSAMSIFQRTIENVLKGLPGCCVRIDDILVTGETDEIHMENLHRVLQRLLESGLKLKREKFHFMLGEVIYLGMSISEAGISPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXQ8</accession>
    <name>A0A6S7HXQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006425">
        <property type="protein sequence ID" value="CAB4009349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXQ8"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="192"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="218"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="29550" checksum="0D710C33048523AB" modified="2020-12-02" version="1">MPEASKNPWKSVSIDFCGPFPSGEYLLVLIDDYSRYPEVDIIRTVAHTTVIPCLDKIFATHGIPRTVKSDNGAPFNSTEFKQFANYLGFQHQRITPYWLQANGEAERFMRTLKKTARTAKLSQSQTVAPADPNHQQAFDASCKSRQKNKVHFDKRTKSSEFKVGDAVLLRNSKKGKLQTPYEHQKYQIVKKKGSMITASNDNRQVTRNSSHFKKFKEKKGETDNPADKEEQPSKQNTNERPKRKTKPPAYFGYKQSDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I431</accession>
    <name>A0A6S7I431_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007112">
        <property type="protein sequence ID" value="CAB4011323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I431"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="120"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="154"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="196" mass="21390" checksum="6715D463AA95BFA8" modified="2020-12-02" version="1">MVNLTVFVDRFRTQTTDMQANEIASRNEFQYANTNGETNVEPVIQNVWSQKQSAEKTESTRGHSVANEGESHFTFAYERPSMLAVQQLNGTRIATTDVNKISYVHIAPKVEGRRLSYTGSLSENASSSPSNSPDGAIVPARDLYGENQMPIKCSQDSDGSPQCSRDSGSSPQCSQDLDSGPQDSGAAVVNKVTRHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6V4</accession>
    <name>A0A6S7I6V4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001791</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007527">
        <property type="protein sequence ID" value="CAB4012483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6V4"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="414" mass="46486" checksum="A350323E7AD36DCE" modified="2020-12-02" version="1">MNTTERELQPGFRRSRMTSIKGLRTRSVVTFNPTTISPGEELYINIPKLKPDSCLVPGSLALLFDFKNSNTKSRFNNNLAKLIAKRLQVKVAGETAYDCSGESLYEIYKDLWLTQGDRNKMTEQGLASENLRKLISGDDSGVKVGDANKVADALLHSVYGSKLRKPIDKIIADHGLYTPFSMNNNPMYILTLPQSDEIMTAQGGEAKGNYKLDNLELEYETIENDTLASEVSRMYSTGRSLSYKHVTLMRTSNWDKDLTIVNENINIPRKSMSAIVLLFTSRVRTDSEEYIYPNIDKVNLTIEGVPNAVFSQGLPKSRFFEEAKRFFCPMCEKSMADEFMSISKFFSNGFALVIDLRSTQDDTTGGGRKIVNTQSGVLMEIKKRATTTDVQCNIFIVSDALLNFASRDLSSIQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I884</accession>
    <name>A0A6S7I884_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6589 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007859">
        <property type="protein sequence ID" value="CAB4013367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I884"/>
    <dbReference type="OrthoDB" id="5978289at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046496">
        <property type="entry name" value="DUF6589"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20231">
        <property type="entry name" value="DUF6589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6589" evidence="1">
        <location>
            <begin position="15"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21357" checksum="8AABE604E4BC91D2" modified="2020-12-02" version="1">MAEILNNIQNKFVPTAEVNKQKYVLQKTFLDGDQLTEERARNAQLANSLAETEYERLAGFETAFADWYLGKKLLMIMFNLFVNAESASSIGTSYASMNRCGKTNAKKGPDKDYNSFKEFMDRETEAHVIAKWMGFAGIENFKDIPKNRPISADADTWTVEEKSSWLASEAKEFKWCLAKARRFHQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IA63</accession>
    <name>A0A6S7IA63_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034517</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008769">
        <property type="protein sequence ID" value="CAB4015574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IA63"/>
    <dbReference type="OrthoDB" id="5958943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15146" checksum="8903BC751CE55027" modified="2020-12-02" version="1">MICCLSSGNNKHEYIFYSNATHISYVSVDGGESTAILTARSANLGYDEQNYRIWYYDTVAATLHKANLDASGLETVSVPSTFGQFTVDGVNQSIYYLNDNDDTVKSIHYNGNHFPEIAALQGGNEFQDIQIDPYNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IB60</accession>
    <name>A0A6S7IB60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA-binding D-ETS-4-like isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A007631</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the ETS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004598">
        <property type="protein sequence ID" value="CAB4003322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IB60"/>
    <dbReference type="OrthoDB" id="8196042at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000418">
        <property type="entry name" value="Ets_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046328">
        <property type="entry name" value="ETS_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11849:SF191">
        <property type="entry name" value="ECDYSONE-INDUCED PROTEIN 74EF ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11849">
        <property type="entry name" value="ETS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00178">
        <property type="entry name" value="Ets"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00454">
        <property type="entry name" value="ETSDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00413">
        <property type="entry name" value="ETS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00346">
        <property type="entry name" value="ETS_DOMAIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50061">
        <property type="entry name" value="ETS_DOMAIN_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="163"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="4">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4003322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="33797" checksum="BA41CE0694908E89" modified="2020-12-02" version="1">MANTNNAWFHQNPFGQNFGYAHRQSQFYYQSTINSATTMKPILSYSSPDDRPLNTYLGLPHVDEPMGYVSSGSTEACDVSEGSFDHEDLASSLISLNDNDLIDHALPDILDEDLRIFEFDFGSYAANQLTAVEDRIAPLTEEVVEPPPTPTLCPENVDDRVVTTKKTAQSKRKSSLKRPRRPRPRNRGNRSIHLWEFLKEMLNNSEENKSYIKWISKREGIFQLVNSSGVAKLWGQRKNRKNMTYEKMSRALRYYYEKDILERVPNARLIYKFGGKTRVIATENGDDSLSDSSEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IE12</accession>
    <name>A0A6S7IE12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pikachurin isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A025389</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004914">
        <property type="protein sequence ID" value="CAB4004461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IE12"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00110">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001791">
        <property type="entry name" value="Laminin_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050372">
        <property type="entry name" value="Neurexin-related_CASP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15036">
        <property type="entry name" value="PIKACHURIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15036:SF85">
        <property type="entry name" value="SP2353, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00054">
        <property type="entry name" value="Laminin_G_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00282">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50025">
        <property type="entry name" value="LAM_G_DOMAIN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="82"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="199"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="259"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="343"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="9"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="49"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="104"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="359"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="2">
        <location>
            <begin position="589"/>
            <end position="598"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4004461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="785" mass="86723" checksum="8DAF5B1D8FA2B3FF" modified="2020-12-02" version="1">MVGKDDSTPTDAFSTGKSSNISSNEGNEKVIYEIISTSLEKGDKDKTPTDTFTNEESSGNGPSEKRNGDVIYEIISKSLTNGNKEVPKKDCDDEDECGSADDVFIDRDDVPKGLAPPKEKNGSSEKIIFYEVISKTMEKKDNLTDVFTAEKSSGSSIKKENDGVTYEIISKSMEPGDKISKKSCDDEDECGRVDDVFVNEGSGYKTTNGQSPSKDKDVPGGTKYEIISTSMEKKDDSTPTDVFTVDESSAIYEIISKSVTKGDKVPSNKNCDDEDECGSADDVFTNDGSGDNEKNVPSGKPPFYEVMSKEIVKKEDSSPKDTFGTEDNDDAKYEIIFKSTTTESKKSQECGNDDEDCQLPNSGSGDDTFNARRTYSPPKFQLEPQVSVESSLRPLFRDTSFLELPPLGKDAQDSIEAELEILPLEGTGILLYNGWERNKIGDFISLSIQDGFPELSFDCRSGPVKIRTLKSIKMYAWNKIKFFRTGRLGSLTLNDDHSAMALSPEPRSALTLNRNLMVGGISEEMRSEVDINVGFHKGFTGYIRNLKIQGKEVDLNSIPKSVKKNPCLSSRCEHDGQCVQDGEGYSCLCKAQYRGRHCSEEIDLKPISFHKDSYVRFNKAALMKILQGEDGFVMFSIRTTQPKGLLMWEAQKLSQHFQRYVTVGLTVGFVSLSFNFGTGKRQFYSNIPVDDGKWHNVTVARNEGSCSLTIDEKHKTQFSSSTNGLSMRTAVDLYIGGIPSIKSATKGLHKIGFKGCLKNVQINSKFLDFDRDYIASQGTGHCSDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IH25</accession>
    <name>A0A6S7IH25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009324">
        <property type="protein sequence ID" value="CAB4016937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IH25"/>
    <dbReference type="OrthoDB" id="5982475at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="26793" checksum="7AA5FF23C710B5B9" modified="2020-12-02" version="1">MMCSTVDGFEIWGGATACHILEYHANIDIIKQFCYYKDQSDAYVVRPFPSMLKCGVIIPFGLDLMSFDTKHLQGFSRSLEILTYMRKAVKTFGLRCGNECSPNEGCNELSMILIPWDGEVLPSEATVLGDIFHFHPEILECCISDTCVRTEKLYFHVGSEHDEEIDDEPCLNGVFGTTDSIEKNTDEEQEFFTWLQNIMVPSCTYIAGEGKLNPVVEFFMTTLAPGWVGGILTGECWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJ92</accession>
    <name>A0A6S7IJ92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A031622</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005401">
        <property type="protein sequence ID" value="CAB4006071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJ92"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="172"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="202"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="202"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="222"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4006071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="25947" checksum="95D6CABB21CB1FB2" modified="2020-12-02" version="1">MANVTNKINDLEKLLNVTYLRNVIVPEMKRMVEESNIDSLYDDARQFLNTTFLIENILPEIEKVWDELGVDEKLEWLINLTNMTFLREFIEEVDREFSISLKGKQISDGDLAGVVNGILDDLFETDMPEIEVPVTSLPTMKPTGTTAKPTLPPVCDADCAGKYRLCLMVTTIVMVLIVMVMMMMMVVVMVMIKILVTDGDEDGDDGYNDGDDGYNDGDDGYNDGGGDKNSGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IME7</accession>
    <name>A0A6S7IME7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rho GTPase-activating 8 isoform X5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062862</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010096">
        <property type="protein sequence ID" value="CAB4018633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IME7"/>
    <dbReference type="OrthoDB" id="19923at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001136">
        <property type="term" value="P:negative regulation of endocytic recycling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007264">
        <property type="term" value="P:small GTPase-mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00170">
        <property type="entry name" value="SEC14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.525.10">
        <property type="entry name" value="CRAL-TRIO lipid binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.555.10">
        <property type="entry name" value="Rho GTPase activation protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001251">
        <property type="entry name" value="CRAL-TRIO_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036865">
        <property type="entry name" value="CRAL-TRIO_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008936">
        <property type="entry name" value="Rho_GTPase_activation_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000198">
        <property type="entry name" value="RhoGAP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45808">
        <property type="entry name" value="RHO GTPASE-ACTIVATING PROTEIN 68F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45808:SF2">
        <property type="entry name" value="RHO GTPASE-ACTIVATING PROTEIN 68F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13716">
        <property type="entry name" value="CRAL_TRIO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00620">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00324">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00516">
        <property type="entry name" value="SEC14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52087">
        <property type="entry name" value="CRAL/TRIO domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48350">
        <property type="entry name" value="GTPase activation domain, GAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50191">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50238">
        <property type="entry name" value="RHOGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="379" mass="43169" checksum="EC5468532589F2B1" modified="2020-12-02" version="1">MAMADREDFSDIDRHHILSIAGDDKNARKVIVVSACRLPPKTEINHDKLFRYMQYTLDQYVENDYSIVYLHHGLNSENRPSISWLVHVYHVLDRKYKKNLKALFIVHTTGFVKVIWSVLKPFISTNFAKKVVYANRLSDLEEHLYLAQIDIPELVKKHDQEISARYEPTYSPAVSGTALDISLPETQQFGVTLERIKSHTGEDIPSAVQCTVEFLRESGLEVEGLFRRSANITVAKAYTASFNRGETVQFVQEKDIHVAAVLLKKFLRELPEPLLTFQLYDDDIMRIHALPDEEKVEEVVRVLKSALPRQNYIVLKYLMEFLVQVTNNAHLNKMNASNLAIVFGPNLIWTESAVASLSSTGAINSIVKIIIENVPSIFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ITA0</accession>
    <name>A0A6S7ITA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064966</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010851">
        <property type="protein sequence ID" value="CAB4020230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ITA0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="10242" checksum="53C39C960D4BB9A2" modified="2020-12-02" version="1" fragment="single">SFLEHLDQEMQVKKISGEHCKKSVKQDLKKVVKTLQEQNVFEKQLTGGKMFAFPDCPRDYLQLLDTKGLFLWINEHKKNVKLGKRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J2W0</accession>
    <name>A0A6S7J2W0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055823</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007264">
        <property type="protein sequence ID" value="CAB4011781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J2W0"/>
    <dbReference type="OrthoDB" id="5987559at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28991" checksum="24DCDFA77082CDF3" modified="2020-12-02" version="1">MWKFADDTTVSEIVEKNEQSTLQMDIDDITTWSMDNSFQLNPFKCKEMVISFSRLPPVFEPIRIGDRNLERVTSIKSLGVILRNDLKWIDHVNSIVSKAAKRLYLLRQLKRADVASADLVKFFCSCIRSVLEYACQLFHSSLPRNLAKNIERIQKRAMKIIFYEMSYDEALNIAGISTLENRREYLSNNLFNDIVLNDDHKLAKLLPSKAGKRELRKERSFEVLPANTNRFGNSFINFYAKKHYKLDVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3P9</accession>
    <name>A0A6S7J3P9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Probable ATP-dependent RNA helicase DDX59</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A071156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013060">
        <property type="protein sequence ID" value="CAB4024481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3P9"/>
    <dbReference type="OrthoDB" id="360161at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00268">
        <property type="entry name" value="DEADc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd23022">
        <property type="entry name" value="zf-HIT_DDX59"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.60.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044742">
        <property type="entry name" value="DEAD/DEAH_RhlB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050079">
        <property type="entry name" value="DEAD_box_RNA_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007529">
        <property type="entry name" value="Znf_HIT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959:SF1">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE DBPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE RHLE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04438">
        <property type="entry name" value="zf-HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="136"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="470" mass="52029" checksum="276DBF45EAAF0CFA" modified="2020-12-02" version="1">MAANFYFVPRSVNHKPSKTKKTSKGKLRNVQSASTDVRGSTSSILEGSCNKSFAESVEETSVDSSLNVISSPENAGESDEDRSDIVYFCKNQRWPEEGEPVCVVCGRYGEFICDQTEADVCSKECKAKNLQLRQAGEKQVQEESKTLGSADERSAGPSYCKTITENDRKPTLEILECKSFAPQENETFEYTVHRQIASLTEKQVHELRSRMEISVRGLNVERPILEFSHCGFCEQLSENLKTCGYVTPTPVQMQVIPVSLTGRDLLACAQTGSGKTAAFLVPMITRIHYKIASRQTYSHSASSGPLGLVLAPTRELCMQIESQAKELMSGLPNMRTALIVGGMPMPNQIYRLRQGVQVVFATPGRLAEILTKADLDFSEIQMLIIDEVDVLMQMGFENQVQSILKNVSTTRQTLLFSATIPPSVERISSTLLTVNPVWISVGAASAPNMDVKQVILGRRQVEKEKTFRFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J4A1</accession>
    <name>A0A6S7J4A1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">protein-tyrosine-phosphatase</fullName>
            <ecNumber evidence="2">3.1.3.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A025214</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10684"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:20101"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:61978"/>
            <dbReference type="EC" id="3.1.3.48"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.48" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020013266">
        <property type="protein sequence ID" value="CAB4024844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5986701at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00047">
        <property type="entry name" value="PTPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12087">
        <property type="entry name" value="TM_EGFR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.190.10:FF:000102">
        <property type="entry name" value="Receptor-type tyrosine-protein phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.190.10:FF:000062">
        <property type="entry name" value="Receptor-type tyrosine-protein phosphatase kappa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="entry name" value="Protein tyrosine phosphatase superfamily"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000242">
        <property type="entry name" value="PTP_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050713">
        <property type="entry name" value="RTP_Phos/Ushers"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003595">
        <property type="entry name" value="Tyr_Pase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000387">
        <property type="entry name" value="Tyr_Pase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957:SF3">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00102">
        <property type="entry name" value="Y_phosphatase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00700">
        <property type="entry name" value="PRTYPHPHTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00194">
        <property type="entry name" value="PTPc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00404">
        <property type="entry name" value="PTPc_motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="(Phosphotyrosine protein) phosphatases II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50056">
        <property type="entry name" value="TYR_PHOSPHATASE_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50055">
        <property type="entry name" value="TYR_PHOSPHATASE_PTP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="490"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="19"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="419"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="11">
        <location>
            <begin position="423"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00051722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4024844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1292" mass="146222" checksum="77D6F1E0DA27D4B6" modified="2020-12-02" version="1" fragment="single">HICDRPLLENKQRILDSSFTASASSESRSPSDARISSGSSWCAPVSDGKHYLQVDLGRLYVIYNFVTFGDSTSSKWVVTYNLNYTVDLTNGRSVWNQMTFQGNKNAYNHAAIQDFPRGTRVRVVRFIPFSYVGQPCIRIEICGTTLFPDKPTDLTVTNIKARSAEISWLDPENTGDGNLTGFWIQLKKENSLIQNITKDKNNECDLDNLTPYTTYKISVAVRHKHGFGEETVTSFLTLEEAPEGPPLNVTVIAESPSSLSVTWKPPEKDKRNGIIVSYTVCISHEESKPCFKEQTTKEKMLVIASLNASTKYYVRVLASTKVGSGNYSESKGKFTNGKQPKMATNRTESTLTFPLQIPTHNFTHFYVVPLKLIDGKQGRSPDSYENNELVTHTEARTSTVPKPFIAAVVTSKDENMFVLGDGRNTSNPTSRRPTSSDYYNGPLEPGTSYSIFQRIFINNKGDYYSTDWSPVSKTVGKERLSGSGTQGSNVGVIVGAIVGVCVLILVTLAIIMFRRRKDKQHSEPDYQLEEEVDKRSCPAVMNDAFCDYNDSIEVEQNSDDGDDTVDDRVEVEVNNTDPDDFYANKEGIAARVHNPIPVEEFNDHVNHLRKNDNKEFKMDFEDLPTGHISNCDIAKQSFNIPKNKYGNAVTYNHSRVILSGDEKTDYINASFINGLAKKYYIATQGPKPKTVNDFWRMIFEHKCPTIVMLTTLKEMGKTMCEKYWPEESDMYGDIKVTAEQTKTFADYVTRTFIVEKGGEQRGVQQFHFMSWPDYGVPLYPTQILTFRRHFKSFHETKTGPAVIHSSAGVGRSGVFIAVDKILDDLDKEKKDTIDIFGFVKDMRTRRANMVQTAEQYVFIHDAIVDHLKCGANEVEATQITTEITNLLKKNDKGETGFDEEFKRLNTVTPQLVKEKCEAALLDQNRKKNRTSEIYPTESGRPYLKHIDNVQNSDYINACYVDGYLVKNYFIATQTPLEETINDFWRMVLQHKSSTIVMLNQLREGDEEYPMFWPTQRAKPQSFGPSTVMLDSFVKKENIVIRKFVVSPSVDLKEDRMVRLIQYMSWPDHGVPKDVDDIAKILSEVEESQRAAEGKGPVTVICSDGAGRSGTYIAISNLVDRVKVVQVIDVFQYVKLIRIKRPQFVETAAQFKLCYDAVTSVLRSFEEYSNHTSDLQNYTIDFFACTYFGSDEPAFTVTEQEFVKLSKVNPAKANGPDGIPSWVLKENADLLADPVKRFSMTFTTEFLTFTNRIFGGKICNVWRIQDGAAPVTLCDQRAFLFTNTHFFYVKTTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J4X7</accession>
    <name>A0A6S7J4X7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TNF receptor-associated factor 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039296</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007497">
        <property type="protein sequence ID" value="CAB4012401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J4X7"/>
    <dbReference type="OrthoDB" id="5989194at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954:SF3">
        <property type="entry name" value="PROTEIN CBG08539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954">
        <property type="entry name" value="RETROVIRAL PROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="308"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="315"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="450" mass="49678" checksum="DF5750CC1B88DBDF" modified="2020-12-02" version="1" fragment="single">MPLQQNEASKLLYKLTITIAAKKQVQSQKHMSTAVVLMQFISLATDRQDLSIFPTQNASSLDMALSRVQGVSKSSGSSESGSAGLATRLPYINSPKRIQKSEISTLNNHIFTELGVAYERLIVEMKLNEVSSGSVTSIVNIAGTPVQQTSGSVRVKLPKLEVKKFKGSVFEWQEFWDAFESSIHTNVGLSDVDKFSYLKGLVEEPAKSAISGFSLTAANYGSAVELLKRRFGKPVTIQRAHINELLNLQGVYKERETGRLRALYDKIECHYRGLVALKVGEATYSNLLDQFRVELELREEAVVLVPNDGRQSGYGKRERNKVKDTREPLCEKKNTERDDDKEGTSCNHKSYVTAKTANLAGLKVLRKELLGLSTFGQKAKEMEVREVVRVDVNPLGSGKVLTLEAYVVPVISRALTKARMTLETELGFVLSGPLKGKCGDDNDGTLQLDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8T2</accession>
    <name>A0A6S7J8T2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Gastric intrinsic factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A085007</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015541">
        <property type="protein sequence ID" value="CAB4028535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8T2"/>
    <dbReference type="OrthoDB" id="5950489at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015889">
        <property type="term" value="P:cobalamin transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002157">
        <property type="entry name" value="Cbl-bd_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051588">
        <property type="entry name" value="Cobalamin_Transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027954">
        <property type="entry name" value="Transcobalamin-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10559:SF18">
        <property type="entry name" value="TRANSCOBALAMIN II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10559">
        <property type="entry name" value="TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01122">
        <property type="entry name" value="Cobalamin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14478">
        <property type="entry name" value="DUF4430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="Terpenoid cyclases/Protein prenyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Transcobalamin-like C-terminal" evidence="4">
        <location>
            <begin position="358"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4028535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="425" mass="46978" checksum="FCA76B9F49705F46" modified="2020-12-02" version="1">MNARVFFIVFFISLSGKAHPFCEKSTEGLHADLTRAVVRSSDWMKQFYAEKTTKLRPYRAASMFATLRIAGHYPSTLLTDFKDGQGNSIDETLKNKLNTVQNLSSIATPELGLIIQGVISICKDPKDFHGYNLIKPLLAGFPKYKTYSSFNNYFGYSLAVIALCNAGNKVPNFVIKELIKGANRKVSYHSVDIDALISTALSCVSTSNRSLQRKVDRAIGKLIESMISKQNTTTGAFGNQYTTALAVEALQAARIHTDGYSCDKAMRNILTYQDDEGSFGSILANIQITPALLGESLISLKRYACPVVPSPTPPPQIITVRVQLVFNVTDMRRTEPPVSVSVLEGTTAYSILVMAGKQNSCYTATYKKYSFGRSVTSICGVAKDSSKNYYWLIYVNEKSAKYGVDGLKPKDGDLITFKYEKLTFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JA99</accession>
    <name>A0A6S7JA99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Zinc finger BED domain-containing 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A069848</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014515">
        <property type="protein sequence ID" value="CAB4026964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JA99"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003656">
        <property type="entry name" value="Znf_BED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02892">
        <property type="entry name" value="zf-BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00614">
        <property type="entry name" value="ZnF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50808">
        <property type="entry name" value="ZF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4026964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12585" checksum="1B4561C5D05BCD93" modified="2020-12-02" version="1" fragment="single">PAMAAKRKESEVWAYFNIIADTPHIAKCSLCSTKIARGKADAAKKAYSVKGLWDHLNSKHKEQHKLAKAAQEEYTSKKQKLDNEVLAAKSRLYQLEQAQPSLQDFLTRNQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHB9</accession>
    <name>A0A6S7JHB9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Geranylgeranyl transferase type-1 subunit beta</fullName>
            <ecNumber evidence="4">2.5.1.59</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Geranylgeranyl transferase type I subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">Type I protein geranyl-geranyltransferase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A064006</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>geranylgeranyl diphosphate + L-cysteinyl-[protein] = S-geranylgeranyl-L-cysteinyl-[protein] + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21240"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11537"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57533"/>
            <dbReference type="ChEBI" id="CHEBI:86021"/>
            <dbReference type="EC" id="2.5.1.59"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="14">Heterodimer of FNTA and PGGT1B. PGGT1B mediates interaction with substrate peptides.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the protein prenyltransferase subunit beta family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.59" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020008998">
        <property type="protein sequence ID" value="CAB4016161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHB9"/>
    <dbReference type="OrthoDB" id="24893at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005953">
        <property type="term" value="C:CAAX-protein geranylgeranyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004662">
        <property type="term" value="F:CAAX-protein geranylgeranyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02895">
        <property type="entry name" value="GGTase-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.50.10.20:FF:000005">
        <property type="entry name" value="Geranylgeranyl transferase type-1 subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041960">
        <property type="entry name" value="GGTase_I_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045089">
        <property type="entry name" value="PGGT1B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001330">
        <property type="entry name" value="Prenyltrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11774">
        <property type="entry name" value="GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11774:SF4">
        <property type="entry name" value="GERANYLGERANYL TRANSFERASE TYPE-1 SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00432">
        <property type="entry name" value="Prenyltrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="Terpenoid cyclases/Protein prenyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0637">Prenyltransferase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0677">Repeat</keyword>
    <keyword evidence="7 17" id="KW-0808">Transferase</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Prenyltransferase alpha-alpha toroid" evidence="16">
        <location>
            <begin position="15"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00031713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00050428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00065714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00078363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4016161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="354" mass="39525" checksum="163B3766F6098F35" modified="2020-12-02" version="1">MTDEKPRGDIREDFLHARHVKFFIRCLNVLPSSYSSLDTTRLTIAFFALSGLDVLNALDRIADDKANYIDWIYSLQVLSKEGRDVNNCGFKGSSTLHLKGYEDFESPFDSGHIAMTYVALASLVILGDDLSRVDKKSVIESLKHLQLDDGSFGATADGSENDMRFIFCASCISYMLNDWSGVNIENAVKYIKDSLAYEHGFAQGPFLEAVGGSTYCALASLVLMNRLESLTSDQLEKIKRWCIFRQKSGFHGRPNKPVDTCYSFWVGASLKLLDCYNFVNFESNREFLMSTQAQSVGGFSKWPDSHPDALHSYFGVCGLALMNEPGVLPVYAPLNISERAVKHLHQLHMTSLAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JI55</accession>
    <name>A0A6S7JI55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018137">
        <property type="protein sequence ID" value="CAB4032115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JI55"/>
    <dbReference type="OrthoDB" id="6781885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="39290" checksum="330933F1557E0384" modified="2020-12-02" version="1" fragment="single">SGNKKHHSCETLNLLTGDTILKAMDGKLVTALILIDLSKAFDSVNHTFLLIKLSNVGASPSVVKWFESYLTGRTQSVRIGSTVSTPLPVSYGVPQGAILSPLLFSIYTNDLPSSVHHSKLESYVDDSKILLSFTVANVDCLKQQLEEDLYLIANSCSENELLINPRKTKYMLIGTRQNLQQLPVDMTINFLNETITPVSFAKDLGMTIDSYLTYDQHITNLVSSCMNSLCQINRVKKCFDKEALTLIVSALVMNKMFYCSTVWSNTSSTNIKKLQLVQNFACRIITNIGKFDHISPGLRELNWLPVKEQLLLREAIMMYKCVNELAPHYLSDLFTKRSDIHQRDTRSHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JM92</accession>
    <name>A0A6S7JM92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005621</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017506">
        <property type="protein sequence ID" value="CAB4031284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JM92"/>
    <dbReference type="OrthoDB" id="6628767at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="315" mass="35594" checksum="93C710C21321193D" modified="2020-12-02" version="1">MIRFKIDGHQFSRIPFPGMFFPINVKNFSEDVIKTSQEKQPKKPSAGPQRPLRPSARPVNNNRALLRYNPREARKIQALYRLSKKRAARQVLNSNSPSYTGSTDDANTFFTNVFGEKHCNADEVKHGLNDFVPSSPVDENLYAPVSPKEAAKKLRSLSNSAPGSDKVEYWHLRSVDPKCTILSKIFNRCIVERDVPEMWKTSSTILIHKKGDASDVCNFRPIALMSCIYKLCMSIIANRLVTFSVSNNLLADVQKSARPSEGCYEHTYILQSFVLDRKRHAYADDLVIIAKNERKLQQLLDAASTSASLIGLTFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JMN1</accession>
    <name>A0A6S7JMN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Triple functional domain -like isoform X5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005497</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009712">
        <property type="protein sequence ID" value="CAB4017802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JMN1"/>
    <dbReference type="OrthoDB" id="10256089at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019898">
        <property type="term" value="C:extrinsic component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051336">
        <property type="entry name" value="RhoGEF_Guanine_NuclExch_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018159">
        <property type="entry name" value="Spectrin/alpha-actinin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002017">
        <property type="entry name" value="Spectrin_repeat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22826">
        <property type="entry name" value="RHO GUANINE EXCHANGE FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22826:SF106">
        <property type="entry name" value="TRIO, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00435">
        <property type="entry name" value="Spectrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00150">
        <property type="entry name" value="SPEC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46966">
        <property type="entry name" value="Spectrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0344">Guanine-nucleotide releasing factor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="397" mass="45721" checksum="2AD39412A48829BE" modified="2020-12-02" version="1">MLSSFQEQLKAIDTLSLRTFCKGEELIDLLRHSDVELRVRNPSTPETIDAHHHIQNLLEFLHSQRSSFLEFAETRRRKLEHRLALKQLEADTKQAIGCIRNGENMLLSNIIPGYSLAEAKDSLVEYEQFKTAMEKTSQRVASIRSRADELVKEDHPKPEQVMKCSDLVYTRWQQLMRKAKEKQQVVMASYNFFKTSEQVSSLLQKVLKDYKIGDDPCSQYAELELRDRCSVIASLLENHAREREDIAKGHEAVYGFADAFLKNVSPTAENGGTVTAGTPNDANKEKMEQQVKEISELIRGQKKFALDLWGVKNTVLGQCKEFLDFETNAKQALEWIHDQGEFYLSSNATIPESEDEAKQRYEEHLKFTEMSEVHEVTTVTFYFVFLRLLVSVPLNYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JU70</accession>
    <name>A0A6S7JU70_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Probable C-mannosyltransferase DPY19L1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A044328</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the dpy-19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008022">
        <property type="protein sequence ID" value="CAB4013788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JU70"/>
    <dbReference type="OrthoDB" id="6019623at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005637">
        <property type="term" value="C:nuclear inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000030">
        <property type="term" value="F:mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018732">
        <property type="entry name" value="Dpy-19/Dpy-19-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31488:SF1">
        <property type="entry name" value="C-MANNOSYLTRANSFERASE DPY19L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31488">
        <property type="entry name" value="DPY-19-LIKE 1, LIKE (H. SAPIENS)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10034">
        <property type="entry name" value="Dpy19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4013788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="33423" checksum="D235DABFA5B32B48" modified="2020-12-02" version="1" fragment="single">TFYKLSKTLLLPCAFLGIVAVLFKVIKFEIHYWLWRDDEKPNGTADENGEDDMPLSNPKPCAEHFYHVLQASAFVIIAILIMRLKLFGTPALCIMASMVASREYFSFVGSKNRHQAILVILLAMMSVQGIDNLNTQFNTSGEYNNPHLEELISWIDTKTSKSHVFAGSMPAMATVKLTTKRPIVNHPHYEDAGLRERTKKVYQIYSRKPCEKSWQTLRDMGVNYIIIERNWCFGRSREKCSMPDIWDVEDNKNRGRPSCCSLLFRKVEEGSHVKPFQLAFRNNDYTVLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1D4</accession>
    <name>A0A6S7K1D4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002499</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022821">
        <property type="protein sequence ID" value="CAB4037191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1D4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="16746" checksum="7A2B309AC05DCEA1" modified="2020-12-02" version="1">MGFALFFNIIAVIIASVASVFLILITAIMKEFQGDYQRSCIEINNRCICYHNNNDRTSYVEWKMKCSDIDPVYSLFVAALVAYIILAVTSFTASIFGCRGTCCAPVDPIVVVTAGVPVHTGGTVVVSSNQSSMYPMGNMHAHSPAYENNSGGHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2J5</accession>
    <name>A0A6S7K2J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sec1 family domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025615">
        <property type="protein sequence ID" value="CAB4039596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2J5"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000418">
        <property type="entry name" value="Ets_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33244">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33244:SF3">
        <property type="entry name" value="PEPTIDASE A2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50061">
        <property type="entry name" value="ETS_DOMAIN_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="12507" checksum="D97DAF384E6BD219" modified="2020-12-02" version="1" fragment="single">NTPIDDVESPAQLLMNRRLRSTIPQTIAELKPRVSDPDEVKTRLNLKQHKQKFYYDRQSKSLKRLHEGDRIRGRMKGSWKPGVVTRDRIVFRLMMVVNIGEIEECF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2V8</accession>
    <name>A0A6S7K2V8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031852</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011891">
        <property type="protein sequence ID" value="CAB4022261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2V8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13682" checksum="096E858D98F062B6" modified="2020-12-02" version="1">MRTESEEEVFEDVVREEEEAAKLSQKSTARKTKSTADKSQTEQKRDKLIELSRDGIIEKPASFIRVSNKDVVDRLYHEYESQRMSCASDFLSTLIISKFAAILGRFNAVESSEKTIRGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6Q8</accession>
    <name>A0A6S7K6Q8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080762</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028047">
        <property type="protein sequence ID" value="CAB4041266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6Q8"/>
    <dbReference type="OrthoDB" id="1739706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF19">
        <property type="entry name" value="ZINC FINGER MYM-TYPE CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="27"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12797" checksum="75336299F3A816F3" modified="2020-12-02" version="1">MIKDILAKETKERKPSLVDLYRELLQEPECFPNLSKIIKIALTLPLTSASAERSFSKLKIIKNRLRSTMRQDRLESLMLMSVESDICRGLDIEGLVERFTDAAPRRWNLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJY5</accession>
    <name>A0A6S7KJY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085088</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020047280">
        <property type="protein sequence ID" value="CAB4046196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJY5"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38681:SF1">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38681">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17707" checksum="83C71BD870FDB5B7" modified="2020-12-02" version="1">MKNSLRCRLNGNGNWLSELPWVVLGLRNHPNTDTGIAPSELVFGAKLRVPGHPPTAISHVAPSTFVEKLRTAVSAASHQARETPWHCTEEQHHSNVPANLFSSKRVLVKEERKLASLRPKFSGPYEVVSRQEKYFTLRFPEGGEEKVSIDRIKQFNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KP45</accession>
    <name>A0A6S7KP45_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Sulfhydryl oxidase</fullName>
            <ecNumber evidence="7">1.8.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A021303</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2 R'C(R)SH + O2 = R'C(R)S-S(R)CR' + H2O2</text>
            <dbReference type="Rhea" id="RHEA:17357"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:16520"/>
            <dbReference type="ChEBI" id="CHEBI:17412"/>
            <dbReference type="EC" id="1.8.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.3.2" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020015693">
        <property type="protein sequence ID" value="CAB4028752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KP45"/>
    <dbReference type="OrthoDB" id="59470at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016971">
        <property type="term" value="F:flavin-dependent sulfhydryl oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003756">
        <property type="term" value="F:protein disulfide isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.310:FF:000001">
        <property type="entry name" value="Sulfhydryl oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.310">
        <property type="entry name" value="ERV/ALR sulfhydryl oxidase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1960">
        <property type="entry name" value="QSOX sulfhydryl oxidase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036774">
        <property type="entry name" value="ERV/ALR_sulphydryl_oxid_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017905">
        <property type="entry name" value="ERV/ALR_sulphydryl_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040986">
        <property type="entry name" value="QSOX_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042568">
        <property type="entry name" value="QSOX_FAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039798">
        <property type="entry name" value="Sulfhydryl_oxidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22897">
        <property type="entry name" value="QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22897:SF8">
        <property type="entry name" value="SULFHYDRYL OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04777">
        <property type="entry name" value="Evr1_Alr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18371">
        <property type="entry name" value="FAD_SOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69000">
        <property type="entry name" value="FAD-dependent thiol oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51324">
        <property type="entry name" value="ERV_ALR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4 7" id="KW-0274">FAD</keyword>
    <keyword evidence="2 7" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="297"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU371123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4028752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="329" mass="38598" checksum="22396810FAE9E264" modified="2020-12-02" version="1">MSNFSFLPRYDIHMRDLESALSFIFTREIVIKKILHKENLERFVGLLVQCFPARPAVNRFLKILHKWLQGIVKDKDRPLRPSALRLFYNMHKADNTSLPENVEWRTCQGSRPQYRGYPCSLWILFHTLTVNCATRGITSLTGADVLARIRGYVKSFFSCLECSKHFYNMSKNVEKEVHTHNEAILWLWRAHNKVNKRLSKEPSTDPHFPKIAYPPKDLCIECSDDRKGHNNTWNDSPSTWRDNVVLNYLKVHYSVHNIRLSESEETPEPDRVRYISGNEFVRVIGFGMTYFDTSLCVIVYGTGVVILVMLYIYILRRRRRGVKHFSHMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KTM3</accession>
    <name>A0A6S7KTM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049358</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016616">
        <property type="protein sequence ID" value="CAB4030092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KTM3"/>
    <dbReference type="OrthoDB" id="5982327at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="190"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="334"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="203"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="336"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="41644" checksum="FDD18B4EE87FCB0F" modified="2020-12-02" version="1">MASKQPRGGNKTKKWKWTNDMVKDLLTFIKEYKSKKEFEGVDFEADLVVFYEELRRLMSINFDDSDFGPVSVSESPMLLQEMNEKELKEFNNEVKAEKSAIKKGYDRVKEKIKALRQDYRNAVNTSTRSGSGRIIRDNWEDLTEIWAGSPATKAIANGCTTREINGESISTGFVETDDEETFTNNLFEKEDDANSQVKQPELQDVENNSESEESDTTLDSRKRIVPVNSTPKFVDNKRKKLEKQLSAKQRDMVLMNAAKKEIDLKTSIAHGLLESNKGINSAMSKMADSISSLGTGLVQGFGLLAQALSQNQQQQQQNHPAFGNFGVNYQPLAGFPNTQYHSQRINHQRVATQSQQSESGGADKGYVTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KUA6</accession>
    <name>A0A6S7KUA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066300</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012765">
        <property type="protein sequence ID" value="CAB4023959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KUA6"/>
    <dbReference type="OrthoDB" id="5985347at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="39599" checksum="C9CE42F9FA40F1CE" modified="2020-12-02" version="1">MYAKRDYYTNCVDRNRNNTKQMWKHINQLVNKNSRSTNISVLHIDEQVITENETIADLFNEYFTDIGPNLSNQITETNTDFKRYMKFKTQHKFNFENININEVLNALEKLKTSKSTGHDNIPAKLLKDASDAVAPFLVFIFNTSLKHGIFPDDLKTARISPIHKSGDKKNRGNYRPISILSIIAKLFEKLVCTQLNSFLTENNILSSCQSGFRKNYSTASALLANTDSWLLNMDAGMINGVLFLDLCKAFDTVDHGILLSKLSIYGIQNKALDWFKSYLHNRTQYCRVNSATSSTRKIRCGVPQGSNLGPLLFLLYVNDLPNCLDKSCPAMYADDTNLTVCSDSINNLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LIT7</accession>
    <name>A0A6S7LIT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054993</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023360">
        <property type="protein sequence ID" value="CAB4037683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LIT7"/>
    <dbReference type="OrthoDB" id="6492514at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11318" checksum="D608926092290DB3" modified="2020-12-02" version="1" fragment="single">LSEAEHKKPHSVLQALREYYGASIGVSGERQKFLCLLQQDAESISSWESRIRNQSAQCENESFEDELMRDQFISGLASEQLRDKLIGKGHRHKDGERAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LPR5</accession>
    <name>A0A6S7LPR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A057415</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026235">
        <property type="protein sequence ID" value="CAB4040072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LPR5"/>
    <dbReference type="OrthoDB" id="5989205at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4040072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="568" mass="64564" checksum="0CE63FF53D6F75A9" modified="2020-12-02" version="1">MREANQAVKREKHLMPTVDDLITDLNGAMVFSKLDLSSGYHQFELSPESRNITTFSTHVGLRRYKRLLFGINAAAEIFQNAIEEILAGLPGCKNISDDIIVFGRGQKEHDTNLRGVLERLKQYNIRLKEKKCSFSQSTIMFYGHIFSAEGIKPDPKKIDAIKAMNPPECSSEVKSLLGMAQYVSRFIPDYAKITAPLRSLTKQGVDWKWTEEEQTALDNLKEALAGDKVMTYFDPRKKTEIVVDASPVGLGGLLMQEGNVVSYASRTLSEVEARYSQTEREMLAVVWAAEHFHLYVYGSKFHIITDHKPLLGIFKSSKSTSTRIDRWKLRLMPYDCQLFYRPGRNEENPADFISRHPNASEVQEQNVAEEYTNYVCINAVPKAMTIEDVEVETQKDPTMQAVIKAIETDNWSTPEVQEYTKIKQELTVHKGTILRGNRLVIPPTLRNKAVDLAHIGHQGVVKTKRLLREKVWFPGIDKLTEEKIRNCHPCQVSTPESSKRSEPLKMTPLPSGPWKEVCIDFAGPYPSGEYIMVVIDEYSRFPEVEILTSTSARAVIPTLKKRQWSSVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS86</accession>
    <name>A0A6S7LS86_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064129</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030763">
        <property type="protein sequence ID" value="CAB4042762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS86"/>
    <dbReference type="OrthoDB" id="10263741at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="46" mass="5197" checksum="E160AD787A3BCA17" modified="2020-12-02" version="1" fragment="single">MQSFLLSTASQQEITNLDAKIHETVETINQLKVSREFFLGFAQGPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSB3</accession>
    <name>A0A6S7LSB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026739</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027401">
        <property type="protein sequence ID" value="CAB4040879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSB3"/>
    <dbReference type="OrthoDB" id="7552331at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="492" mass="55988" checksum="4FC761605C97E67F" modified="2020-12-02" version="1" fragment="single">SSIVLYWIYGTSQRFKTFEANRIAKIQDLIPPQRWKHVDGLQNPADVGSRGILAKEIKEHPLWWTGPDWLKQNQSNWPSKFTAPPSLEALQSLGVTKDCLQLKEKEEVTLQTTTDTASTEPVIDITRYSSYIQLVRVTAWVFRVVTRSNLFSSTPLAVSELSKAKTWLIKQAQAQMFPNTVKLLKKKNPLPLSDPVQSLNAFLDKDGLLRVGGRLSQSMKDYESQHPLVLHGKHYLSTLIIQSEHKRLCHAGPKLTLGSLQDTYHIISARRVVRKLIRECVVCKRASPKITTQLMGQLPSARVLPTFANERVSVDYAGPFTLKIGSVRKPTYRKAYVAVFVCLVTTSCHIELVSDLSAEAFLATLRRFVSRRGKPMQIWSDNATCFRRTDKDLRELYRLLQRPDIKESVMNFCSFQGIQWKFSPPTGPHHGSVWENGMETLSSIDMILSSLKTIVHQLVNGLLLESQRFILVQMNLFESLLYKRRLAPSSDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVI6</accession>
    <name>A0A6S7LVI6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042498</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038753">
        <property type="protein sequence ID" value="CAB4045319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVI6"/>
    <dbReference type="OrthoDB" id="5969729at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="20270" checksum="478D900EFDDDF7C6" modified="2020-12-02" version="1">MAPNRRCPFGLSDHLTITIFPAIRQKSVSEKKIIKVRDKRRSNISSLGRFFQNVPFEDILSSVQSPCEKLSIFTEIVNYGLNTIMPERSIKVHATDRPWMTNNLKRLINKRQKAFATGNKPLFSLLRNKVNRERKRCREIYYKTKVQDLKNTKPSQWWREIKQLCGCKTTNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D768</accession>
    <name>A0A7D9D768_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A083534</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the gasdermin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000051">
        <property type="protein sequence ID" value="CAB3977505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D768"/>
    <dbReference type="OrthoDB" id="9436533at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012501">
        <property type="term" value="P:programmed cell death"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040460">
        <property type="entry name" value="Gasdermin_pore"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042377">
        <property type="entry name" value="GSDME"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15207:SF3">
        <property type="entry name" value="DEAFNESS, AUTOSOMAL DOMINANT 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15207">
        <property type="entry name" value="NONSYNDROMIC HEARING IMPAIRMENT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04598">
        <property type="entry name" value="Gasdermin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3977505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="464" mass="51564" checksum="BE1B2AC2DA75E987" modified="2020-12-02" version="1">MSLFDASVNQVVKDVSDKTLVAVPNRCSADYCKIFSLIERKTRPWHLPWKSEYKYIPTELTLNDVLIEPVDVKNLQSSSVLFQNYSSTPSFHKAGKIGGKIAEEFDVDVSVNETMQVSLKLGNVMKQEVLWQKLYDAVNGKMVKTDHPLLKAIKSCKKRSLFLIGMVVTSGLSSEILDEDMNFGADLGGSPQVALKLNSDASSDTKQHRQYTIPLGTALAYTCYKLKVGNNGALNLQLGNDVTDAPLVGGDKIFEVESVQEALSGLLTNEVSNDLITMLRKILKNKPTCAFKLNVVVENAIDTLQGEDVTCKITVQHLQKLFSEDCSTDCFKFLVKAGFQIDKEKNKLVYPEKLDLLKSLYVLLDCLSEMSNVQIQTLTDCDISHRNDIMLPIQKVIQSTDVNKNNIEFSEVFADDHPVARFLKSVGLNLVRSDSSVHVEYLPKCQSVLQLRSSLVAVHGMCAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D7G5</accession>
    <name>A0A7D9D7G5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">U5 small nuclear ribonucleoprotein 200 kDa helicase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A088681</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000103">
        <property type="protein sequence ID" value="CAB3978302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5575at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18020">
        <property type="entry name" value="DEXHc_ASCC3_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000102">
        <property type="entry name" value="RNA helicase, activating signal cointegrator 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058856">
        <property type="entry name" value="ASCC3_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041094">
        <property type="entry name" value="Brr2_helicase_PWI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050474">
        <property type="entry name" value="Hel308_SKI2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961:SF13">
        <property type="entry name" value="ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961">
        <property type="entry name" value="DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26582">
        <property type="entry name" value="ASCC3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18149">
        <property type="entry name" value="Helicase_PWI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3978302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1709" mass="193669" checksum="CFCDA87BBCB788A1" modified="2020-12-02" version="1" fragment="single">MSARKPNVELPRLTSSLRAFSGLTSPYLRGQEYGRPDELKRKREWQAKQSKEEDFSWQDLNRLVKKNVAADKENEVKNALRDLLNIAYEIAGKDASSEVTNSTAIFLFELLREPSFVTKNELSKIAETFGPCDRSLVDDAYKLTRLLLSNIPEDELNRKQQKSTKHKHQHAFGEGIKFSFPEPVEFEADLTLFDTEVENEKPKFSLKVVTEPSKAEGVKIAQENREDWVTPTNLDEPGDITWLKQRCDFYFGNAGEHLNSGDMCSVIFDLLSSRRGNQEMQNELFELLGFDRFEFIEELLSNREKIITGGSTRAVETVNDNKGFATTAKNSLAKPNYGCQVTIQSEQEKKIQKQVRKEEQKSLRRNKIEDRDLENHEDYLKSVGFDPEMMKYHREQALIEAASKPLFSKTSRSSRDVIKYPYVFDSLIAAQQSGAYIGGCKLQLPQDTTRYDCKMYEEFHLPPTQSKPPKETDEFINISSLDEVAQIGFKGVKKLNRVQSVVFDTAYNTNENLLICAPTGAGKTNVAMATVLREVKQNIKQGVVMKDKFKIIYVAPMKALAAEMVRTFGKRLAPLGISVRELTGDMQLTKTEILTTQMLVTTPEKWDVVTRKSSGDIALTQIVKLLIIDEVHLLHDERGSVIECLVARTLRQVESTQSMIRIVGLSATLPNYLDVARFLRVNFHQGLFFFDARFRPVPLGQTFIGIKARNIMGQFQDMDTVCFDKVLDNVDDGYQVMVFVHARNATVRTAMTLREKAKNNGTIGLFQSKQSSAYGTAEKQVRKSRNKELRELFADGFCIHHAGMLRSDRSMVEDLFGKGLIKVLVCTATLAWGVNLPAHAVIIKALRLKLKRCKRPVAYYSNSTASQRLILSGDIEQNPGPFQQNAVEQISVRITTREKRNPPASHYNGITINTRLLRPLNRVNENIGNCGQPHCIKVSHLNIRSLKDRGKFHQVNDLILRSDFDVFTISETWFNSTVKNKEYSIDGYKLIRLDRLKKAGGGVCAYIRNSLKVRVLRDITKTSQCGFQQLWLSLQHKKLKSLVICVAYRPPDTPVSCLRNELTAAYTHAVMLGKDILVAGDLNCNLLVDSTESCALRDLCSTLNLTQLISSPTRVTETSQTLIDVILASNVDLVKKSDVLSITISDHFLVYSTLNLKMPRTKPVTITTRSYKNFNADAFCNDISKIPWDTVTVFDHTDDQVSCFNNLFQDVLEQHAPVKTFKSKYRKSKVITPEIRDLMRERDRLRKRAHQRSNPRDWERYRGLRQEVKSKIMLSEIQLVKDEISENKSNKTSIWKTVRHCLNPCGNSTTAYSRDCTEIANEFNLFFTSVGEAAAKQAQKLAIDYELEAVAPTNSIIEECVDGIAPFLFNCVTQEQVRNIIMNMPTNKAPGYDKVGMKVLKMCLPSILPVITDMFNTSLSTACFPKDWKHAEVVAHLKEGDHEVAGNNRPISLLPVMSKVLERLAHDQFVDYLTTNNMLSDHQSGNKKCHSTETLGILFTSHLYRAIDEKKVTAVLMLDLSKAFDSIDHRRLLDKLRKFNIPDLTLAWFQSYLTDRTQCVRIQNSLSDSLPIKHGVPQGSILGPLLFNLYINDLPSVCQTCNVESYVDDSKLYISFSNKDVNEGLDNLRHDLNRVASWCCENHLLINPGKTEFCVFGSNRMLAKTIIPPITFLGKELPVVDSVKDLGMIIDKHLSFNDHTDALTSDLMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DB54</accession>
    <name>A0A7D9DB54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A059819</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000397">
        <property type="protein sequence ID" value="CAB3981515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DB54"/>
    <dbReference type="OrthoDB" id="6756070at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="673"/>
            <end position="715"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="684"/>
            <end position="706"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3981515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="757" mass="85391" checksum="6F2183AE9076E85F" modified="2020-12-02" version="1">MRAANTAIKRIRHPIPTVHDISHELNGAKFFTKLDLTQAYHQLELAPESRQITTFITHAGLFRFKRLNYGTNSAAEIFQHALQQVLHDIPGVRNIADDILVFGSSYEAHNKTLDECLHRIDTHGLTLNLDKCQFLQPKLEFFGLNFSADGIRPDPKKVSALATAAMPTTVSEVRSLLGMANYSSQFIPNFATITEPLRQLTHKGTPFIWTQEQDHAYNTLRKALINSPVMSYFDVNKATEVTVDASPVGLSAILAQRDSPSSPPNIVAYASRALTSTERRYSQTEKEALAVVWGIEYFHLYLYGATFTLYTDHKALEVIFGNPISKPPARIERWFLRLQQYKFRVVYKSGSTNPADYLSRHPPDSKQKQTNIADKYVHFVTHTAVLPALTVDDVRKATSKDTLLGLVRTAIQTGQWSSSELKQFKPIKDELSIDYTNNVVLRGTRLVIPSSLVQRVIQLAHEGHQGQARTKALIREHIWFPEMDKKVRAELEKCLACQATGQPSQPEPLRSTPLPNKAWDKLKIDFYGPLPTGQYILVILDCYSRFPEVEVLSSISAKNVIPKLDAVFARHGVPSQVVSDNGPPFQGHEFNRYMTKMGIQHNTSTPLWPQGNAEVEAFMKPLGKAIRTANLEGRPWKQELSKFLLAYRSTPHSTTKVPPAQLLYNREIRGKLPTLPHNSKVINRHREAKQNDKEQKQRGKQYADSRRHTRTSKLRVGDRVLVRQKKTNKFSTNFSPTPYTIVAIKGSLPVSLVGGIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DF96</accession>
    <name>A0A7D9DF96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A011964</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000660">
        <property type="protein sequence ID" value="CAB3983810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DF96"/>
    <dbReference type="OrthoDB" id="5296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05325">
        <property type="entry name" value="carb_red_sniffer_like_SDR_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051468">
        <property type="entry name" value="Fungal_SecMetab_SDRs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43544:SF7">
        <property type="entry name" value="NADB-LER2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43544">
        <property type="entry name" value="SHORT-CHAIN DEHYDROGENASE/REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3983810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="27763" checksum="8770456247F89F53" modified="2020-12-02" version="1">MAAFKDISIFITGCNRGVGLALVKQILSLPDSPKVLFATCRSLKSDNSRELRELAEKNPILHLLELDVTNALQLENVVKEVEAKLAGSGLNLLINNAGIYDLKNSEYGIVSCTLDEVTRDLMMKVYETNAVAPLMIVKAFLPLLRRAAKDPPCQPQATVVNISSEDGSVALNMGGHYQYKCSKAAVNMLTVSLSLDYAKDGITVVCVDPGWIKTDMGGKAAPLTLPQAIPSLVRLIGSLDLSKTGSFLQHNGHTIPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DG95</accession>
    <name>A0A7D9DG95_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endoplasmic reticulum-Golgi intermediate compartment protein 3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A070208</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endoplasmic reticulum-Golgi intermediate compartment membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Golgi apparatus</location>
            <location evidence="1">cis-Golgi network membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ERGIC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000817">
        <property type="protein sequence ID" value="CAB3985016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DG95"/>
    <dbReference type="OrthoDB" id="270930at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030134">
        <property type="term" value="C:COPII-coated ER to Golgi transport vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033116">
        <property type="term" value="C:endoplasmic reticulum-Golgi intermediate compartment membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006888">
        <property type="term" value="P:endoplasmic reticulum to Golgi vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006890">
        <property type="term" value="P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045888">
        <property type="entry name" value="Erv"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012936">
        <property type="entry name" value="Erv_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039542">
        <property type="entry name" value="Erv_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10984">
        <property type="entry name" value="ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10984:SF25">
        <property type="entry name" value="ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07970">
        <property type="entry name" value="COPIIcoated_ERV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13850">
        <property type="entry name" value="ERGIC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Endoplasmic reticulum vesicle transporter N-terminal" evidence="9">
        <location>
            <begin position="10"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="Endoplasmic reticulum vesicle transporter C-terminal" evidence="8">
        <location>
            <begin position="149"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00040493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3985016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="387" mass="43529" checksum="994CEA34A2021B54" modified="2020-12-02" version="1">MQTNDILNTIKRFDAYPKTLEDFRVKTLGGGAVTVISGLLMFLLFVSELSYYLSVDVSPELFVDTARDQKTRINMAVYFPKLPCVYISIDAMDISGEQQIDVDHNIFKKRMDEHGNPIDTHEGQKEGLGDKSEEAKEILKLAKDRCESCFGAETIEKPCCNTCAEVQDAYRRKGWALKDPDSVTQCSREGWKVKLESQKNEGCEVHGYLEVTKVAGNFHFAPGKSFQQQHIHVHDLQPFGGQQFNLTHHIKHLSFGEKYPGIKNPLDGTLVIADKSGSMYQYFVKIVPTVYKKLNGEIVHTNQFSVTKHRRTVKQVTGANGLPGVFVLYEFSPMMVQYTEKRRSFMHFLTGVCAIIGGIFTVAGLVDSLIYHSSKVLKEKIELGKAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DHG2</accession>
    <name>A0A7D9DHG2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001182</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000901">
        <property type="protein sequence ID" value="CAB3985673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="9885925at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.80">
        <property type="entry name" value="E3 ubiquitin-protein ligase SopA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="40"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="141"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="815"/>
            <end position="854"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="89"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="141"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="161"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="823"/>
            <end position="843"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3985673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1331" mass="155222" checksum="136DD762B20AC119" modified="2020-12-02" version="1">MGSRRDNDGRLNMDAVRDEREDVSTQYTAEWLSNVQMPPKAHSVVQDIDEPHSPRVSRSAPALSVRSRQSNAGISRSKLQLQLRQLKEKQQLDREARYLELEMQRQELELERKRRFAEIAERKELQEMEAKLAHAKLLEQFEVDSDDQLSDDGNRELNMTSHDHEGNGPYDDAERRDAERRDTERRDAERRDTERRDAGRQDAEQRETERRDTERRDAERQDAEQHETERRDAERRDAERRDAERRDTERRDTERRDAERQDAEQRETERRDAERRDAERRDTERRDAEQRETERRDADVEMRNAEMRKDEMRSEEMRNAEMRKVEMRNVEMRNVEIRSVEMRNVKMRNNVKRNVEMRNVEMRNVKRNVEMRNVEMRNVEMRRCGKMREEAERRETESRELYRRDELFSHARYNAEQFRMPYGTYNNTFMNPQVPTTQMYQRGYTTDQQTQLVHPNFVPTMYQDAVQSSCPQYGNVYSHNRQFQHPTSDSQQMFEQQQQALRLMATTIGSTISKGFVMPKREYMSFDGNPLDYPSFTTNFKTNVEDVESDPNVRRTYLIQLCTGKAKEAISGSVMLPPEEGYKKAKSILHEMFGQAHIVAASHIDRVTKGSIIRENESEKLMQLARDMENCGMNLNKLGYQSDINSRHNISAIVLRLPKYLRSDWAKEANKLRDQRSEPDFAALTKFVVNKAKLANTEYGRLVNVKMDWERNKTKSYGKQQRNVSAYQVSNISSNEEQDGKRNITMKLKCIFCSKEGHSLGRCYMFQEKSYAERKKFVSEKGLCNLCLAKGHFASKCQKGRKCFIAGCGRRHHPLLHSTESNQSKREEDSTKVDKDKDQESPAKPKGLNAQNGHCGTADIAKRQVCLRVIPVKVSSRDNSREKITYAIRDEGSNTTLVKESLVNELGLEGQPLDFKLTTMNKVSQESGKSHFLYVQGLGQKDCLEIPNALSIKDLSVARSCIPTKGDISKWSHLNDVHIPELKNPEVTLLIGTDVPEAHWKMEERRGRKKEPYAIRTPLGWSVAGPMGTTSESEFSAFFVREEDEFLGRMVEKMFEMDFSESTYGQSLGMSLEDKKALSIMKESLKVVDNHYQLDLPFRDKLGFPNNRGLAERRLHSLKARLKKDADLHEKYKKGINNNVDKGYASKIHEIEGINVLPDDKLEWKREVEIYETQTEEIKPLDTFIQHYSCWYRLQKGIAWLNRFIKYLRVRNSNGASYKNDETQADISTRSRDEVTGAGVGPLTVDDLQNARKQLIRYVQQEAFPDEITRLKRRSSGQSTSKIVWPMAVVEEVFADKDGMVRQVMIRSNGGKFKRHVRELCLVEEAKEVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DPA2</accession>
    <name>A0A7D9DPA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001264">
        <property type="protein sequence ID" value="CAB3988008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DPA2"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18496" checksum="7AB5C597076D75E1" modified="2020-12-02" version="1">MNRTVELMPDFRRMNKAEITGYSTRHVLTFNPNSARPEEEIYVNIPKLKADSVLVPGSMALVFDFKNSNTKSWFGNNLGKLLQRRLEIRLAGEKVYDNSGESLLEVYKDLWLHRKQRDDMVEDGIGSEATREKISKDDAANDDVDAAALFEVFGTKQRIRIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DS08</accession>
    <name>A0A7D9DS08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DDB1- and CUL4-associated factor 17</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008455</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002124">
        <property type="protein sequence ID" value="CAB3992792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DS08"/>
    <dbReference type="OrthoDB" id="9971789at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080008">
        <property type="term" value="C:Cul4-RING E3 ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031620">
        <property type="entry name" value="DCAF17"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14815">
        <property type="entry name" value="DDB1- AND CUL4-ASSOCIATED FACTOR 17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14815:SF2">
        <property type="entry name" value="DDB1- AND CUL4-ASSOCIATED FACTOR 17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15802">
        <property type="entry name" value="DCAF17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="524" mass="60347" checksum="8DA8925BA9443A23" modified="2020-12-02" version="1">MAYCTRQRRNRSIFKAIINRQIYGANVLQDIRTIRTMIESGRTFKKVYEMCSKSPIVYEGDRLYINSFATCYDLTYVKRTPRIVYSLQRRPLIVTTKRKIEELLVFECPLDQTTFSKVQGTFYANGPYSVGVTADNYLKVFDFKTGESFEQVYLFPGRKFKYLYWETDLERLVVQSTLLPQNSTAHVMQRVPAQTNQVLLYIAIFTATPLEFICMLPISHKIFGTDVCNANVRNGLLIVMYRRRKLQFFNLEDIIKNRTIPLKLGESLQPRNNLCLPELDEFTSGVVGIAPLGLPVNVTLLEKPSVLFEVVSSHHDLSLGGYPWHYIANNDQVFHVRSVKDHVLAENGTLNNDDNLSLGTEKAIFHSDLSGRILYIALSYLRCLKFGPGSSESGIKTHKLHEQFILDYRLPTKVSSTVHTKSGRKVKQLFNSNRMYLEIIQDIDYDDELDLLVVLYLNQTRRGEGIVGFYDNQTGQQVHSLSIDDINEEHEHSIAINRNILVIISKHVYDFRCLVYHLDHAKTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DZH5</accession>
    <name>A0A7D9DZH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Potassium voltage-gated channel Shal-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A070921</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002984">
        <property type="protein sequence ID" value="CAB3996947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DZH5"/>
    <dbReference type="OrthoDB" id="433309at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005249">
        <property type="term" value="F:voltage-gated potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001508">
        <property type="term" value="P:action potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000028">
        <property type="entry name" value="potassium voltage-gated channel subfamily D member 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.710.10:FF:000152">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003968">
        <property type="entry name" value="K_chnl_volt-dep_Kv"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003974">
        <property type="entry name" value="K_chnl_volt-dep_Kv3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537:SF105">
        <property type="entry name" value="POTASSIUM VOLTAGE-GATED CHANNEL PROTEIN SHAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="VOLTAGE-GATED POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00169">
        <property type="entry name" value="KCHANNEL"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01491">
        <property type="entry name" value="KVCHANNEL"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01498">
        <property type="entry name" value="SHAWCHANNEL"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0407">Ion channel</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0630">Potassium</keyword>
    <keyword evidence="5" id="KW-0631">Potassium channel</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="185"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="217"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="315"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="348"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="376"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="424"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="12">
        <location>
            <begin position="424"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="436"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3996947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="446" mass="51010" checksum="72091167BD9801F8" modified="2020-12-02" version="1">MASKSGTEWMPRVMQASALGMAPLARRKLSPVPSASLPNKRVVINVSGRRYETWEATLSRHPDTLLGSKEREYFLDEISGEYVFDRDPSIFRHILNYYRTGRLHFSYYDCSKTFEEEFTFFGIPFDGFDSCCWNEVNDSYEAATVIATTMTNLRQRVNRTHFDTIRETLWDAFENPQRTRASRTVYNIIVVAVTLSLVVTIGQTIRCPGGETCGEEFHNLFLYTDGGCAFIFTVEYAVKLYAVPYRKPFVKSLESFIDILAILPFYFDLLEVYAPELKSFSILRVFRVFRVFKFLKNSKRLKTLLITFRNAAPELGVLCFIFAMATIMFAACVYYLEKNVPNTTFTHIPLAIWYAIVTGTTLGYGDMVPSSIGGKLISAVFLTLAVFIVSLPVPFIEDKLLHQQHLQLTEDRLEMRLKRILKTKQSHRGSNRTRRGTASNIHAATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E2B7</accession>
    <name>A0A7D9E2B7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003501">
        <property type="protein sequence ID" value="CAB3999035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E2B7"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="479" mass="54959" checksum="3229841B8DB4F340" modified="2020-12-02" version="1">MVLWKKAQNNLCHFCLNVQTLQHIVSSCKTSLDEGRYTWRHNSVLKHLATYISSVRRNFHVYANISGFDNPSVITGCNDRPGLVISDNNQNIYVIELTIGFETNMAKNCLRKRERYKDLCNFLKERFNKVMYFNLRMGAIGVLSHECKQFYDFLDREVLNPDQLPLKWVMFAGKLPFPMHGHKTFVYKGKLIVVRTYCERKSGKDGRQDGGSVVTHYLKIYEVLHTPPYSAKELYSCTIEQETDHGDFYEAELINDELFIFKNEKKYTQPWSTEIYNLDTNECREMPSAQYSLYKTTTVVRRHHVIFVVAISQDNNDAFKTNVDHEILKASSQLIKRRQTKHCIENIRLGKMELFGKQVLMTLIVLVAIEQFALIASEPDFKKALELVIKARQQPGNIDYASFCKTTGAGASKRGCQIKEMDDVGLLVCLESHICETLLLIELNALKTIVEAQLNVLDYYGKIIPGLKCGASGSQPTKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3B9</accession>
    <name>A0A7D9E3B9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Elongation factor 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A083584</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003655">
        <property type="protein sequence ID" value="CAB3999715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3B9"/>
    <dbReference type="OrthoDB" id="364892at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01681">
        <property type="entry name" value="aeEF2_snRNP_like_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04096">
        <property type="entry name" value="eEF2_snRNP_like_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16261">
        <property type="entry name" value="EF2_snRNP_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000010">
        <property type="entry name" value="Translation elongation factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.230.10:FF:000006">
        <property type="entry name" value="Translation elongation factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.240:FF:000003">
        <property type="entry name" value="Translation elongation factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.870:FF:000002">
        <property type="entry name" value="Translation elongation factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.870">
        <property type="entry name" value="Elongation Factor G (Translational Gtpase), domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908:SF10">
        <property type="entry name" value="EUKARYOTIC TRANSLATION ELONGATION FACTOR 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908">
        <property type="entry name" value="TRANSLATION ELONGATION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="EF-G C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3999715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="519" mass="57642" checksum="46B5516CA176F5BA" modified="2020-12-02" version="1">MRTWLQAGEALLQMITIHLPSPITAQKYRMEMLYEGPHDDPVALGIKNCDPKGPLCMYVSKMMPTNDKGRFYAFGRVFSGVVGTGQKVRIMGPNYVPGKNEDLYNKPIQRTILMMGRYIEPIEDVPCGNIVGLVGVDQYLVKTGTITTYAEAHNLKVMKFSVSPVVRVAVEPKNPSDLPKLVEGLKRLTKSDPMVQCLIEESGQHIVAGAGELHLEICLKDLEEDHACIPLKTSDPVVSYRETVTEESSVTCLSKSPNKHNRLFMRAAKLPDGLPEDIDNGDVYPTQDIKARARYLAEKYGFDVSEARKIWCFGPETSGPNIVIDISKGVQYLNEIKDSVIGGFEWASKKGPLCEENLRGVRFNIHDVTVHADAMHRGARQIMPTARRCIYACILTATPGLLEPVYLCEIQCPEVAVGSIYGVLNRRRGHVIEECQVAGTPMFVVRSYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQDLPGDITDPSSRPGKVVADTRKRKGLNEGIPPLDKYLDKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EHV3</accession>
    <name>A0A7D9EHV3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Adiponectin receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A059081</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ADIPOR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006235">
        <property type="protein sequence ID" value="CAB4008808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EHV3"/>
    <dbReference type="OrthoDB" id="5585746at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033211">
        <property type="term" value="P:adiponectin-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004254">
        <property type="entry name" value="AdipoR/HlyIII-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20855:SF52">
        <property type="entry name" value="ADIPONECTIN RECEPTOR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20855">
        <property type="entry name" value="ADIPOR/PROGESTIN RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03006">
        <property type="entry name" value="HlyIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR604254-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4008808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="36304" checksum="45C1BB81DAD088A9" modified="2020-12-02" version="1">MFFFQALIGRGEENLQVMFQNVKERIHVKEAAEQAERLARQVIEAGKRGWRVVAHWELPEWLRDNDYIDHGHRPPLESFRLCFKSVFRIHTETGNIWTHLLGFIAFVCVTLYLYLRPVTLASPFPSDITEKVVFGAFLGGALFCLAFSTLYHTMDCHSDKISNLFSRLDYTGIALLIVGSFIPCLYYGFYCYQKTKIVYITMVCLLGLCCIGISLWENFNTPKYRVLRAVVFLSLGLSGIIPCVHILIAHGSTIALRQASLGWLILMGILYVTGAVLYATRIPERFFPGKCNIVVSFVANFFKWHMTQIRCHCNYTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJM3</accession>
    <name>A0A7D9EJM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075583</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007369">
        <property type="protein sequence ID" value="CAB4012073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJM3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="7817" checksum="E23FB387737D0F49" modified="2020-12-02" version="1" fragment="single">TPANDIEKNGTPQDAEKVSGAPEDSTVTTNNKEAEGIAEPTVPATEAAVDKPPSEPASIQPPTSDLAAPVEQSMEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ENY8</accession>
    <name>A0A7D9ENY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007915">
        <property type="protein sequence ID" value="CAB4013519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ENY8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008160">
        <property type="entry name" value="Collagen"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24637">
        <property type="entry name" value="COLLAGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24637:SF421">
        <property type="entry name" value="CUTICLE COLLAGEN DPY-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01391">
        <property type="entry name" value="Collagen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="88"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="15405" checksum="74959C5CAD5D6AC7" modified="2020-12-02" version="1" fragment="single">MGEMGQPGEMGMQGPPGKDGRNGTHGRDGRPGPEGPQGPDGPMGPQGPPGKKGQNGTQGPPGLPGLDGLPGGDGLQGRPGKDGRNGTRGPQGRPGSEGPQGPEGPNGPPGKDGKNGAQGPPGPPGQNITGPPGPPGGAKCTILKGQTEPLICDENYIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ERF1</accession>
    <name>A0A7D9ERF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011834</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009186">
        <property type="protein sequence ID" value="CAB4016609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ERF1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="28308" checksum="1FF60E215A2E7DD0" modified="2020-12-02" version="1">MEKVKEISQNFAKAVVAGNRSGSGKIVYEFYEKLILIWGGSADIKPLPYGMTADDLVEESSAEDDSNFFNYDEIDREILLAEENEKENVQEDDFEKEGMEESTSTSEVVPSKRKGNCVPQLIDNKRKHLERNLSAAHRDQLLIKEAKEDSKFKKDLADVMRESSNKFAESVKVIGQSMTDLGTGISRSIEMLSGAIMHQAHPNNQNVFYQQRGYQQHMPNNGTYSQYVNLQQVQQPEQQNEESTYYFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EW94</accession>
    <name>A0A7D9EW94_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026772</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010643">
        <property type="protein sequence ID" value="CAB4019828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EW94"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="681" mass="78515" checksum="D8BC4C222D6259F5" modified="2020-12-02" version="1">MKAQPSPSKPDNSHIWKRDLRDSRIRPFGRYITTFDWSPILDIHDCDTKYEKFNDTMTVMIEKFFPLERIKVRKCDKPWMTSSIKSAIGRRQKALHESGKNSDIYKYWRNRVQSCIKVARKIYYMRSVEKLKNSNPARWWKEVKAIGGLSSKNSWYSQLFSDDVRNCEELAENFNNFLTALTSHFDPLTLDEIQEGLEVPNHYLVDAQQIYRKLSKIKTTKSPGPDMFPNKILKTFAFELAPVISDIFNSSMTQGTFPKALKRSIVVPVPKVSPPKSIEDDLRPISLTSQIAKVMEDCTLDNFFPEVVNKLDTKQFALPKKSTTHALVYLLHSILVALERGSCTARLFFADFKKGFDLVDHNVIIKELTLLGTHPSIIRWIKAFLCDREQCVRVGTSMSSWKKTNGGLPQGTKLGPLLFAVLINSLLKNWPGRIKFVDDTSALEIIPRFSSSLMPLVVNEISDYALERGMELNYKKCKQMLINFLKYKGSDDENPIYVAGKPVETVSSFKLLGVWISNDLSWNTHVDMVLKKANSRLYALRLLKKAGLQASDIVQIYISFIRSRIEYASPVWSSIPKSLSDILESVQKRALRIAYPDLLYDEALEISNLQYLSTRRDISCKKFVESLRRDVSPYNPLTQIMEIRPGVKTHDYDLRNDRTAEQPLWSETTERLKNFVTRKYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZ21</accession>
    <name>A0A7D9EZ21_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027138</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010164">
        <property type="protein sequence ID" value="CAB4018783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZ21"/>
    <dbReference type="OrthoDB" id="1938551at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="529" mass="60888" checksum="CA31FB838CD07EA3" modified="2020-12-02" version="1">MQKLLESVDVLAISEHWLYADELTILDNLHNDFLYYAKTTEQNNMNTRWKRGQGGVAIVWKKHLKAQRLLLGNDRIVAIKFRMNNQNYVFCSIYFPSTNSNLADFIDTLTCLNAVCTQLSYREEQIIIAGDFNVHVSDPRSGQRENNRGKLLLEMFAEFDMFPVNVDMPCMGPLFTYYSSCGNSVVDYIFASKNIERIVKCVKVGDEHPCNLSYHLPLIAGIEISAGINCHESSNNLENEYERIAWRKCASEQVLEYQRRLNDTITTMDDTLYTSDDVENYYRLICRSIKSSDKCLPRAKKKKRSTNVLTTNDGRTISNPEEIADVWANYYEKLLTPEENTNFDDDFREYIDIEVSDITKNSLAEFDDIFQDPITLKEIEDVLTELPNNKAPGDDGITYEHIKYSGDILAAKLLILYNKIIELEYIPRQLKLGIKIPIPKGGKSCASKFDDHRGITLLCTFNKIFERLVLNRLQNKIRCRHHPLQGAYQAERDALTTSFVIDESTKHCCEENDKVFACYVDVSKAFDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HBI4</accession>
    <name>A0A7D9HBI4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A045352</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000296">
        <property type="protein sequence ID" value="CAB3980509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HBI4"/>
    <dbReference type="OrthoDB" id="5974113at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00062">
        <property type="entry name" value="FN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.10.10">
        <property type="entry name" value="Fibronectin, type II, collagen-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000562">
        <property type="entry name" value="FN_type2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036943">
        <property type="entry name" value="FN_type2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013806">
        <property type="entry name" value="Kringle-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053320">
        <property type="entry name" value="Protein_DD3-3_O-glyco"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35170">
        <property type="entry name" value="PROTEIN DD3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35170:SF2">
        <property type="entry name" value="PROTEIN DD3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00040">
        <property type="entry name" value="fn2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00013">
        <property type="entry name" value="FNTYPEII"/>
    </dbReference>
    <dbReference type="SMART" id="SM00059">
        <property type="entry name" value="FN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57440">
        <property type="entry name" value="Kringle-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51092">
        <property type="entry name" value="FN2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="334"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3980509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="462" mass="52875" checksum="6C0841B9C82B119E" modified="2020-12-02" version="1" fragment="single">TANCAVKTTSRTCCVFPFKYKNRLYRSCTKVDNGNTLWCATTSNYDKDRKWGNCIITRRKRGSDDSPNLKNYDEQTTGGMFDPYLKNYDEQTTGGMFDPYLKNYDEQASGGLFTADQKLNGKTNIYTRQNANGARSGYECPEERDYHPYWHPTDWIDIAVLAYNESMCQYYQKESFNVKPKEECLQYYNTKSDGFRHDSVFSNKKDCENNHGYWVSFSNYLEKYPKYQTEQACKAASSSQRRLIWAIPYRSEDIDNLKMTGDNVESLKCCLVALDAPECTKAPYTRSNHLGNADGVVPLRYDWAIPHFPSGHTQRCVMRIRYNISTGDYPPFSTFGDKNDDPNNGVKSPVQNNPKVDVGDVQMPLQLAINTAQFGRTFQDRSHLFKLRPRPKGVLDNDVIHNLNVRGKRGNIVQAYPAVEYDFIPKRLNISSTNLVHIQWTGKFCLGPTIENLYGGQGVSNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6D6</accession>
    <name>A0A7D9I6D6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027968</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003154">
        <property type="protein sequence ID" value="CAB3997648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6D6"/>
    <dbReference type="OrthoDB" id="5989055at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="519" mass="59267" checksum="39D8F735DF2B60CE" modified="2020-12-02" version="1">MCDTLYENMDNGQLSGVVFLDIRKAFDSIDHTILLQKMNDQFGIKNVELDWFKSYLTNREQACIVNGAMSSPKTIVCGVPQGSILGPLLFLIYINDLPECLEKTSPHLYADDTQISTSAKTIEELTENLNNDLKKVGEWLARNKLQQHPTKTKLMYIGSKHSPSTQSNDNEGEMHECKEFVAKEYVNLVYDNIDFGEEIAKQTHVTNGIITQIVCDQKQISSSNQTTLIKKTQRAVEMPTTDIVPYSIGVKKTPTFQSIELDPECLELTLVDDSKQTASKLDLAYILIKYIYVLQMKNKELPHVSRVGYLPVIDASPTEYSTINTMLTRSKEIADKLELKYAVLVFDEAVYAKAQQVRWKEETFFNRFVVRFGEFHTIMTYLSAMSKIFEDGGLKDVFIEPGIVSEGSIQGVLSGKHYNRSVSCHKIMYEALQRLRFQAFMDQMTEEDQEVMTSFIESMAGSFPEDKFLSDDIESPLMQQILESYELFIAESSSKSRTFAFWTMYIEMAGNYAEKLYIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6R5</accession>
    <name>A0A7D9I6R5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072836</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003373">
        <property type="protein sequence ID" value="CAB3998504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6R5"/>
    <dbReference type="OrthoDB" id="6782434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="25739" checksum="1E750B830952AC69" modified="2020-12-02" version="1">MKMVSLLAEIVLVIPHSYAGQERLFSVVHKNKTDSRSSLKLDGSLSSNLAMKCHNPEAVTPCYKWQPDEDPLRSPKKQQKYVKWVKLEDLRDDEGRQVLHRHFFAGVKTLFITGTTDVMFSTLGVTNQATRKKAQPCPTQMNEHVETLRRNFTSSDLNVFLVHLQTLAQSEQEHTLKNLQGKELAKILKALGQPAFMEKRKEKQINTHLEAAKGGLVCAKFPDEVCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICC7</accession>
    <name>A0A7D9ICC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036466</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004657">
        <property type="protein sequence ID" value="CAB4003542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICC7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="24419" checksum="77FCBA2027BD1C82" modified="2020-12-02" version="1" fragment="single">MFDEEQNEGGDVAEATAQGGEDNSLLETLMAEIEKFKNENKHTKQALSAVTVSQGEVSTSTKNAPSSPAQTLQVVYVSRERKIQKFSGSRKADEDTVENFVDNVKSLISARKMTQIEQTDFVLSLLESSATEEVKLRPTAECDTSDKIWRVENHTTVTKVILRMKAKGYGNPEGVLASAVWHYYTNFRIIGYKLRNQLAAIDFNKHRSREIAKTADGTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IFJ0</accession>
    <name>A0A7D9IFJ0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A053101</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.49" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020004919">
        <property type="protein sequence ID" value="CAB4004480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IFJ0"/>
    <dbReference type="OrthoDB" id="5986604at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="239"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="248"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4004480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1128" mass="127577" checksum="3CBA7C7DD7E62C4F" modified="2020-12-02" version="1">MATYGKVSPFDEAEETWTQYTERLEQYFLANEVTDAKTQRAIFLSVCGSKTYALIRDLLQPKKPGDTEIKEIFKELEKHFIPTPSVIVERFKFHNRIRRVDEGIAKYVAELRRMTEHCKFGTSLDDMIRDRLVCGINNEKIQRRLLAEPELTYKKAVELSLAMESASKHVEDLGAKGVSIEDPNNIHRVNNREDNQQSSRSECYRCGGKHAANSCKFRELKCFNCDKIGHIAKVCRSTRRGTKQAELPQRRETGSRGKREQDTEVKMVNAQGAQEEEYSLYNIREKKKDKSISIDVELGGQPIRMELDTGATKTIISEETYNKLCKNLTPLRKTTVVLSTYTGERIPVAGEVMVPVRELKEVLETHKEVFTEELDWASPIVTVAKPATNSSQTNHRVCGDYKATINQASKLDNYPIPKTEDLLTTLSGSQKFTKLDMSQAYQQLRLDEESKKYTTINTHKGLYQYNRLLFGISSAPGIFQRTPENLLQGIPSVIVRVDDILVGGKDDADHLSNLNAVLTRLSGAGLRLKKIKCCFMASDVTYCGYGINKNGIHPVVEKVEAITKAPEEPTDLLIHFDPTKPLILATDASNYGVGAVLLHVFPDGTEKPIAYASRSLNAAERNYLTIEKEALATIFGVKKFHKFLYGQSFTIKTDHKPLEGLLSDKKGVPTQAAPRIQRWALTLAAYEYKIQYKAGKNNGNADALSRLPLPKMPLSTPQPGETILLMEHLEETPVNSNQIRKWTKRDPVMSKLELSVEDGCLLWGTRVIIPPPGRSNILTELHEAHPGVSRMKALARSYVWWPTLDEDIEREVKSCNQCQLHHTTPAAAPLHPWEWPGHPWTQLHIDYAGPFKGEMFLVVVDAYSKWLEVHQMTSTTSTATIEKLREIFATHGLPTTVVSDNGTNFTSNEFEEFMKRNGIKHIKVSPYHPASNGQAEHAVRIFKEGIEKMKEGSMRTKLSRFLLKYRITPHTTTGVPPAELLMGRHLRTQLDLIQPNLGDRVREKQSQQKAVHDYHARERIIKTGNLVYAKDFRKPKSWMPGTVVKKTGPVSAEIQLDDGLIIRRHQDHLRIRTDRVITDNDDTVCNTTVTVAVVCDAWLRACVAELRTQSPGRPKWRSFEFAAVFQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IIT7</accession>
    <name>A0A7D9IIT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049817</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005690">
        <property type="protein sequence ID" value="CAB4007082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IIT7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="86"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="330" mass="37471" checksum="819920DDFB2BE7A1" modified="2020-12-02" version="1">MSESSEALKAAKIQRRSAKAALTRLGKALNHLCENERPAEEVSNYLIKVEQAFDNVVSKHELYANLIDQDEQNDWNAKHTERKNTSPEISEPSISNENNVIDISTINDEVSIETVCCPPEFLQNNLEQNTSQSASQPEVSNEAGPAYNSTPCGFRMEKPKLPKFCGDVREYAIFRADFKHAIESRYSKRETITLLRTCLKEKPLELIKGIGSDYDAAWEYLDSIYGDPRFVSDTITQDIAKFKPVEKGEDVRFCDLVHLVRRSYNMLKEVGVPSDMDNSHMLSIVEQKMCPDDRKVWSRDLERAKTSNAECFDDVDDERDEVAHACDSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ILJ5</accession>
    <name>A0A7D9ILJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035146</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007494">
        <property type="protein sequence ID" value="CAB4012391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ILJ5"/>
    <dbReference type="OrthoDB" id="411871at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="645" mass="72316" checksum="16A02B504A838649" modified="2020-12-02" version="1">MEGYRAQNCHGVLRPASLIAQLPMINEGFQPGMQQCAAEFFLDFTRALDITSLDYCDKGIIPSHCDTSFLNSFQFSLRSEVKCLLCGDISKLWRNKVAQSIKECKELYYKSKVRNLKVTDASKWWREVKNLSGMADRNNQWFEHLIDGETVDSVNTLCERINHFFVNLTKDFTPLSQDDVSNYSAGDSDREAPGPDGIPNVILKTFAFELAPVIADIYNSSLRDAYLPPLLKRASVTPLPKHSPPGSIENGIRPISLTCEIAKVMEGLTLARILPSIISHLDNKQFAMAGKSTQQAIVYILHLALEALDKGGCTLRFFFADFRKGFDLIDHKILLDKLSKLGTHNVVLGWIAAFLYKRSQFVRIGSDASTLQYINGGIPQGTKLGPILFAVMVNDLLSAWGPRAKFVDDLTALEIVPRNSPSLMNHIVADIHSFAEVNNMKLNPAKCKDMIVNFLHFNTGVLQPIIIGATRVESVSSFKLLGVYVTSDLTWSVHCEYIIKKSNRRLYALRKLKRSGVAPTDIVCVYCAIIRSVLEYASVVFANLPQNLSDDLERVQKRALAIIYPNCSYDDALKLAGIEPLVLRRDAACKRFVETILPGNPLYPIVHSRSAPVNHGYKLRSDNVARNIRMRTDRFQKFVTIKYAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQM6</accession>
    <name>A0A7D9IQM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006975">
        <property type="protein sequence ID" value="CAB4010959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQM6"/>
    <dbReference type="OrthoDB" id="5983957at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="20426" checksum="9FD0979E0CD5D978" modified="2020-12-02" version="1" fragment="single">FMADLPRDRVTAYEPPFTSVGVDYFGPIEVKQGRCHVKRYGCIFTCLNTRALHIEIAQSLNTDSMLNALRRFVSLMGCPREIRSDNGTNFKKADKELKASIDEWNHSNIENFCTQRGINWVFNPPGESHMGGAWERMIRSVRQILRALLKEQIVCDEVLSTIIAEVANILNCRPPTRNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUM2</accession>
    <name>A0A7D9IUM2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABHD2 isoform 5, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089390</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009265">
        <property type="protein sequence ID" value="CAB4016805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUM2"/>
    <dbReference type="OrthoDB" id="5954035at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15197" checksum="02904DAA034FA9C5" modified="2020-12-02" version="1" fragment="single">MSDLPALLLLALVVLYVILKFLNVVEPARAPKLFFRRAGRGDRLVTQIVNLCPILQQRYVPPLLWGKNGHLHTFVFSKLSPKIECRATWQHSVKLEDNSTVIFDIFEPCPDEKSEVGKQIQLQLLLTSESCGNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWP5</accession>
    <name>A0A7D9IWP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009349</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009772">
        <property type="protein sequence ID" value="CAB4017931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWP5"/>
    <dbReference type="OrthoDB" id="6015512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="31148" checksum="3B7819944D3632AD" modified="2020-12-02" version="1">MKMQHIVLLLCLFIPLLSRNCFGVVKSESNEIGKLLKNGQPVLFDVTLPCIEKATKKIVEPADRIKQLFAFATCQISNSASGSEPPRVMVHDDNEENVNIGTSAPATDLRFRAMLLYQFPNTVSYMILDPQKGHWFFTAELSGCDIFIATKASQPNMPMVFHANLDELYKTEQQVDNLRWKGDKVDQILGAFQMNYVLKVRIHITPEKPIPSNYDQYWNVYKTTHPIVKVYRYVYNDALTFPQTQFYGYYENGWKFFLKAKQNGVKSDIPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8U9</accession>
    <name>A0A7D9J8U9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cell cycle checkpoint RAD1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A029126</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the rad1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013169">
        <property type="protein sequence ID" value="CAB4024679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8U9"/>
    <dbReference type="OrthoDB" id="337581at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030896">
        <property type="term" value="C:checkpoint clamp complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000077">
        <property type="term" value="P:DNA damage checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.70.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003011">
        <property type="entry name" value="Cell_cycle_checkpoint_Rad1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003021">
        <property type="entry name" value="Rad1_Rec1_Rad17"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10870">
        <property type="entry name" value="CELL CYCLE CHECKPOINT PROTEIN RAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10870:SF0">
        <property type="entry name" value="CELL CYCLE CHECKPOINT PROTEIN RAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02144">
        <property type="entry name" value="Rad1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01245">
        <property type="entry name" value="RAD1REC1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01246">
        <property type="entry name" value="RAD1REPAIR"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4024679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7360" checksum="CB0AC8D001BEC634" modified="2020-12-02" version="1" fragment="single">YKITLLKPSTKALDISSKISIRMDNRGFLSLQYMIINDDGETCYVEYLCAPDEESDENDDDYLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JAQ8</accession>
    <name>A0A7D9JAQ8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SCAN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A004339</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013842">
        <property type="protein sequence ID" value="CAB4025825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JAQ8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057560">
        <property type="entry name" value="Znf_SCAND3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23663">
        <property type="entry name" value="Znf_SCAND3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCAN" evidence="2">
        <location>
            <begin position="12"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="67"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4025825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="625" mass="68913" checksum="7E1326AE33D51A67" modified="2020-12-02" version="1" fragment="single">SLCVVCKQQYDGGHSCISCKNPCHTFCGEPVGEEGFGKPVLCFNCKDMNNPKAVEAVKANKSKDQSLLKSSDSSASTYTATHSKKIVSKSTVHETDESRKPDDQADLRPTTNRPDEVPATSHVYMDTRDKQAAIESQSAPTAPGELTHAESAPSETTAEKRKVTSISVEDHENDVDGPSTKLPKMSSSLNSAQASITNFLLSDLSAIQESGVNLLIALSELPRKPSVALGTSLISGLVISNGDYKLYCDGGCQKWYNFKSRLLNHIIDASQTHANAARHARKMIPVNARKLKVIRNQLRTAIGVVQSKSAAIHYETRIAELHNAGADVGDFGHSRVLFPQMIAVACSYINRETTGLPPHFYTTTDKSTNHPESNQVTLACPVVDGKRCGIPLGLTLVYSSSDGSGGHGGELAAAIFSDLKFHAKVEGLSLMSMQGKVTDSRYVNAPFVGAMNEPIFEVLRERCDKEDQKILLQDIWWECQWDPGHWLDKVFSKFHDSELITRLLGRVAMFHQLFRHGKMHPVAEVTAKELKLPFLVTNSYAPQHFMSSSYLSLMNLQRSYEAYPETFKDHHNKPDILYKLCGNDFVYDLCGLIDLLWPLVVLMLKARMVPRLEVCSIREAGQSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JB06</accession>
    <name>A0A7D9JB06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025966</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013725">
        <property type="protein sequence ID" value="CAB4025646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JB06"/>
    <dbReference type="OrthoDB" id="687730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="398" mass="46175" checksum="47B9F1D51C22BB0E" modified="2020-12-02" version="1">MAAKEGLRRITQEKLQAIEKISQLEKSYSNAEDECSHYQSLYERAQHELEDLAANHRQRLEDMKSLRDQLDKSERRHVALDEQMTKERESTNEKLNISSKKEVEYISRLESLQAECDFRKEQLVAMRAQMEKRQKEASKKKINQNHEQDFEKENPGDLSLVEETIQVLKEKLQRLQDESKTKQEAVNQIKAKLDEYDNGEVKADDTELPSLKNELLNSEQDLKHTRGKIEELEEQLMYCHLKAVDELNDSDHSSNSLIVNKESDECITDLSNHLPRSEAGTNYDVDMLDDLEAELQNIRNQLCRHSGKTVREELPLGLSNDNEGRRSELILLKCMRHIQFIKDEMTSFKELVSSRSYTITALADGQSDPGEQTINELRGKNIDYNKLSDNRLCSYNAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDJ3</accession>
    <name>A0A7D9JDJ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014609">
        <property type="protein sequence ID" value="CAB4027113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JDJ3"/>
    <dbReference type="OrthoDB" id="407509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13104" checksum="D8C2EA46DC69336B" modified="2020-12-02" version="1" fragment="single">GEVADYLSNLDPSKAPGPDKIPGQFLKQCSSVMGPSLCSLFSHSLQSGILPSEWKSANVASVHKKIRRNLLPTTDLYPCFPSSAKSWSDAFVIDHFFEHVQDMINKSQHGFLHGRSCVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JEG4</accession>
    <name>A0A7D9JEG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034028</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015216">
        <property type="protein sequence ID" value="CAB4028058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JEG4"/>
    <dbReference type="OrthoDB" id="10058156at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="279" mass="31584" checksum="CFEEE8D44C44535F" modified="2020-12-02" version="1">MEDQCNHMKEIGIYSIALYSENSSNATTASDREYENILKNVREGEYSLVFASPECLLGKKAWRKILCSEKFRDHCIGVAYDEAHIIAQWHKSWRKLIDLEIEGLAKGCSGCQRVQHDPKCSPLHPWEWPSTPWQCIHVDFAGPFLGMMFLVIVDAHSKWSEVITMHSKTTTSKTVEALRTVFARNGLPEQLVSDNGPQFTAEEFQLFLKKNAVKHVTSAPYHPATNGLAERFIQTMKQSLTSMKEDLGSTQTKLSKFLMKYRNTPHSTTGETPATLLMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JTB1</accession>
    <name>A0A7D9JTB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058592</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020738">
        <property type="protein sequence ID" value="CAB4035126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JTB1"/>
    <dbReference type="OrthoDB" id="7480422at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016706">
        <property type="term" value="F:2-oxoglutarate-dependent dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015095">
        <property type="entry name" value="AlkB_hom8_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09004">
        <property type="entry name" value="ALKBH8_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="15356" checksum="9B58343141D909A2" modified="2020-12-02" version="1" fragment="single">MWKFADDTSVSEVIPNDGVSSLPDKVDEVNKWSNDNKFQLNPGECKELRINFTTQPFAEEPLNINGKPFEIVKSANVLGMIVTNDLKWNKHVSNTVEKASKRLYLLRQLKRAEVETRSLYKFYTAGVYKICRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JVC2</accession>
    <name>A0A7D9JVC2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068255</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021955">
        <property type="protein sequence ID" value="CAB4036366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JVC2"/>
    <dbReference type="OrthoDB" id="6781714at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033467">
        <property type="entry name" value="Tesmin/TSO1-like_CXC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF3">
        <property type="entry name" value="MYCBP-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01114">
        <property type="entry name" value="CXC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="700" mass="78254" checksum="B76F1C597DBB7526" modified="2020-12-02" version="1">MVAKSGIPFTNLFVDQTLEQLIRELKVAGGITGITQNAGALDRFFLIAPELIKLIKDFHDSYCTKSDQPATKEHYQLSGSMAVRMFNNSGLIKKGIVKHCDGNPFSRKNINLMNLVSNMEVPENAKDDILLRDEKGTEKFEEFVCERVVASTAKMSIWDPMKKIKLKTFTTCRKKTQCKVGNKLVKLREDRQLLTRFLLVQQSRPSMIQSLSDTIGRYEFSVIPRSLFSSDGLLLIPADKSSFVHAIEECSIELSSEQNSTFDVPSTVESRNKVCIIDAMAIVQAIKKGPLMVYCSDFANAFVRSIKKIISGYEEGRVIFDRYLENSLKAQTRSKRSTGIDPVKFDINDATNIKLVPLKTLLSHIETKSKLTEYLGKAVLREYADSNKSVVVVYGTWTYCNKPNIVDPNIIEHSHEEADTLIPMHVLDASKTDGDTRDIDVYSPDTDVFVYLMDLFSSNNIAGHVRFITGKGKAKRTIDIRTRCEAVGTEKSKGLLGLHAFSGADWGGKFAGISKSRWINHYLTLESDSDAVDAFQKFGEDDFDQESVSDVLESFVCEVYAKNSKCRILGELRWELFRTKNLESEKLPPTLGALKPHIQRANAISAINKGYREPRPQTPLLTDNGWETISDGTISPKKCLEPPAPESVVELVKCGCRSECSTARCSCHKNNLPCTPLCKCGDCSNASDFDVPDQDEDIDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K017</accession>
    <name>A0A7D9K017_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083972</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025275">
        <property type="protein sequence ID" value="CAB4039358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K017"/>
    <dbReference type="OrthoDB" id="7417618at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="28240" checksum="CE632A43321B89A2" modified="2020-12-02" version="1">MEDKGTEKEMNKNFGSEVKLQDIFELISGMSKKMDKLDIIQENMENIQTELKEVRKSIEYAHSEIDDLKKENEKKAQVHRETTERINKLEADNVTLLNSVIDLKARSMRDNLLFYNMPEESDENTTATIHKLLEEKLGFEDAAMKIKIDRSHRLGKKKRGETKARPIVAKFNFHQDKVSIMRNAKKLKDTASRIGISEQFPEEIVRERKRLYPEFKKARRNNLKATLVRDKLFINGELFRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KEK3</accession>
    <name>A0A7D9KEK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036037</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032877">
        <property type="protein sequence ID" value="CAB4043671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KEK3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="10054" checksum="4B53C6BEFA1F8233" modified="2020-12-02" version="1" fragment="single">VCDDGVCDDSVCDDGVCDDGVCDDGVRDDGVCDDGGGCSGNDGDYDGDDDGVCSGDDGVCSGDDGGDDDVGDDNGDNDDGDNIHMKPIHTCFIVCWITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KLE4</accession>
    <name>A0A7D9KLE4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061269</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020044518">
        <property type="protein sequence ID" value="CAB4046017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KLE4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="16455" checksum="1C66582D2559B11C" modified="2020-12-02" version="1" fragment="single">FLTLKTRFPTLRVRFFTQRTNFFTLRTRFPTLSARLLTQRISFLTLRTRFLTQRTRFLTLRTRFPTLRTRFLTLRTRFLTLRTRFPTLRTRFLTQRTRFPTLSARFFTLRTRFLTLRTRFPTLRTRFLTQRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L5X8</accession>
    <name>A0A7D9L5X8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PREDICTED: uncharacterized protein LOC107348660</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A079750</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013885">
        <property type="protein sequence ID" value="CAB4025903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L5X8"/>
    <dbReference type="OrthoDB" id="5984724at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="250"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="369"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="250"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="397"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="412"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="423"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4025903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="494" mass="56717" checksum="F8A7D3971BC85539" modified="2020-12-02" version="1" fragment="single">MRKLAAELELTKQRTEEARKVAELNNSRAENAERQLVEDCDTVKDFLTKHNFTTGSPEGVPVETITRSPIKLKGVDLPKFSGEDKTNYEPWKAAFMAMVDVQNIPVGEKILRLQSCLAGKALTLVKDLGYSSAAYERAKSKLEKRYGGERREQIKQLKTLRNWPKVRSHNLQDLEEFQALLERILITINNCGSLQDQSLNLSAKEKLTERDVEAYKYCLIDYAREDCFESLVDLVELRVQVIGEAREETEGFGKKNEERGNKNRDERPRFRGFNTRFSTRHCIVSTCKQDHPPWVCDAFKRLPVQKRKELISKSSRCYRCLAAGHHSKDCRKARKCGVDGCQSNNHSSYLHESTPQNGKTNARQQLEPDAPTFYPRQPPAQEARTEQSGRMDINNQQRDESSTQERTHKTNGESAWPTTPSKDVQKSDQCERRSTTKTYATKNYEFSSIDPTHFSSLKRLYRVTGWIKRFIANCKIRGKSGRNYERTLSSAEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LCJ1</accession>
    <name>A0A7D9LCJ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017564">
        <property type="protein sequence ID" value="CAB4031357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LCJ1"/>
    <dbReference type="OrthoDB" id="10023302at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="162"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="183"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="36897" checksum="C4204DA560DC3ACA" modified="2020-12-02" version="1">MISESEAKTVLYKKTAEYLDRGVQRNLEGDVPEPLKPVMPMKPVMPVKPLPLKPLLREEIFKIESHRSTEHDQNEVLRVFFDKPAVPKFKTSNEEEEIEMNNSHLNTNLDNFTSWLKFLQGLGECQDQQFPDKSGHFTTCSGENFKLPPVLIALTHSDEVKGNDEVPDAAMVEDSSNFRRPNETSSEASSSGTAEYLDRGVQRNLEGDVPEPLKPVMPVKPLPVKPLLREEIFKIESHRSTEHDQNEVLRVFFSLVVWSVWADWSEQKDLSSTLYLAVKRGVKRSFVRRELEEKFLCDDAKEHLNSFENLKLNVWVSFQVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LFA4</accession>
    <name>A0A7D9LFA4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">HORMA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A043514</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017747">
        <property type="protein sequence ID" value="CAB4031577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LFA4"/>
    <dbReference type="OrthoDB" id="1928087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051321">
        <property type="term" value="P:meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.900.10">
        <property type="entry name" value="HORMA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003511">
        <property type="entry name" value="HORMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036570">
        <property type="entry name" value="HORMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051294">
        <property type="entry name" value="HORMA_MeioticProgression"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48225">
        <property type="entry name" value="HORMA DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48225:SF7">
        <property type="entry name" value="MEIOSIS-SPECIFIC PROTEIN HOP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02301">
        <property type="entry name" value="HORMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0158">Chromosome</keyword>
    <keyword evidence="5" id="KW-0469">Meiosis</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HORMA" evidence="7">
        <location>
            <begin position="2"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="77"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="81"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4031577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14573" checksum="BE9AA350EA2FE688" modified="2020-12-02" version="1" fragment="single">MMTMKLLYYDDVTPPDYQPPGFEDTEYLGHNFGEGVYRIDVGDITTRSEMTLLAVSLRRRTPTWIDWVGLRVQSKMQAKYRRPDETSHAKDEINHHEMQEDESYLDREPDAKLKTEDHKHVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LPJ5</accession>
    <name>A0A7D9LPJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Dscam, isoform F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A010924</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022912">
        <property type="protein sequence ID" value="CAB4037287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LPJ5"/>
    <dbReference type="OrthoDB" id="5988349at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051170">
        <property type="entry name" value="Neural/epithelial_adhesion"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12231">
        <property type="entry name" value="CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12231:SF253">
        <property type="entry name" value="DPR-INTERACTING PROTEIN ETA, ISOFORM B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01832">
        <property type="entry name" value="VEGFRECEPTOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4037287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="44970" checksum="FFF984E2DC715F16" modified="2020-12-02" version="1" fragment="single">TPTVTLSCSSPVIVNEGDDFKCVCRGEGGNPPANVTWYKDGVQIGETRKEEQTLTLSNVDGTDNGTYKCMAQSHINATNETSIELVVKLNFKPKNTKITFTKNPAVVGGNVAVMCESSGLPEPSYIIFHNDTKISNEKTCTIDVVQYSDTGTYKCIASNKLGNDSASKSLTVGQIYLRRGGKSLTFLKEPTVKIKWSLDPVLFTNISRSWSFQSSASGKDEISRAGDITIVTRLYEVDIEKPATLVLKNVNGSYNGTYKFTLYPRLPDPSISEVVVFVAEKPNVMVINCPRRITLDEGEDRTCVCTEQGGNPPANLTWYKDGKQIGEATYRENRLTLTSVTELDVGTYMCVAQSYTLTDEESIEVNVTLNFKPENTKIVIEQQGKVGKPATITCKSEGLPEPSYRITHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M4P3</accession>
    <name>A0A7D9M4P3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A046193</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031830">
        <property type="protein sequence ID" value="CAB4043235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M4P3"/>
    <dbReference type="OrthoDB" id="5945834at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070492">
        <property type="term" value="F:oligosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146:SF53">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16146">
        <property type="entry name" value="INTELECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4043235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="25359" checksum="0E86D97D43CE25B6" modified="2020-12-02" version="1" fragment="single">LEITPQSCLDYLKRGFKSDGYYTIYDFKTDDRITVYCDMTSEAGSAWTLVMSYAFKNRHMDQIARKSMQQDTPVNEHSPNWNLYRMSLSQMTHLKSQSTHWRSTCTFPTYKVDYTDYVRAKFTDFDIMTFLGRGICKKVEYVNIRGHQCAQCTSKWWHGNNVYSPHIDSPSNGCQFVPTQGSASSENNFGFYIQGVVNKKFRCSAGPLSTTNWWFGGYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MA11</accession>
    <name>A0A7D9MA11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050506</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031953">
        <property type="protein sequence ID" value="CAB4043281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MA11"/>
    <dbReference type="OrthoDB" id="6003429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="424" mass="47270" checksum="E93D75EC9F4D73F1" modified="2020-12-02" version="1">MAGGRINLSSVNCYKNNLNEWKFEQIYNHKDCSNLTYDRKRIKWSGSFDTLQSFVECGLKLHGNWSSPGGNAKKFTCLNSDLTITWYARKQNTLVLHGDASLALANTLITVCGAPTTSNEFTAKPNAVEDGELSDNICMPTISSVIEQRHNNNTNAVTADSIVDMTTEIPNQSFKSDVHSEKLKVRSNSFPCNVVHDFEHGCQCRLLAADLEEVKLDMVIMQRNMESKIFAIEKSRESEEINQLQKELSNEREKCKNLEADISILIRGRNREVNELNNTIVSLENRLKSSEAMNESLRQSIMQMKNHAIIDETSITSIVHSIENPLGSSSFSGVFNSDDQPDDLPLCIKNFITIDEASITPEAHCIDNTLGSQSDDFLSGFENFTVADGVNIAIDRTDSSLNTSSSFKETAKEIPRETVSCVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FCR5</accession>
    <name>A0A6S7FCR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phage-related lysozyme (Muramidase), GH24 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A006471</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000025">
        <property type="protein sequence ID" value="CAB3977015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FCR5"/>
    <dbReference type="OrthoDB" id="5945565at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031640">
        <property type="term" value="P:killing of cells of another organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.530.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023347">
        <property type="entry name" value="Lysozyme_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052619">
        <property type="entry name" value="Phage_lysozyme-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37406">
        <property type="entry name" value="T4-TYPE LYSOZYME 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37406:SF1">
        <property type="entry name" value="T4-TYPE LYSOZYME 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="Lysozyme-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0929">Antimicrobial</keyword>
    <keyword evidence="2" id="KW-0081">Bacteriolytic enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="28291" checksum="A85EAD2BD7620C5E" modified="2020-12-02" version="1">MKLYFICACTIVFAVCNITPTKAVSKCTTLSKYSSFQALVSGTCINNAKQWILQNGGLTCKECMYVDSQGRKIIGFNFNLDETDAKAILAHYEADYDKIVNGTPTDLTTPCDCKAVTCLNQNQIEDIFDESIAQAFGNAKRVLPSFESLCCTVQKTVVDIAFVLGNSTFSTYEQFFTWIEYQNWQAASDFLSATKWCQVEDSARCYSDANNLRYQGCPCFGQFPNKCYYAVSSCCQEGQSCCNGKLLNICGDTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FKA5</accession>
    <name>A0A6S7FKA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000266">
        <property type="protein sequence ID" value="CAB3980184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FKA5"/>
    <dbReference type="OrthoDB" id="5989852at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF3">
        <property type="entry name" value="MYCBP-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33811" checksum="5D9723F6749FD8EC" modified="2020-12-02" version="1">MTRFDTIFSAHLPENLRVQCGAFKKALHECSPEMIEIYDNIQSWYSANIKPHEDKEDNGDLAQFLMQYLEQVNSLLHIINACCSGDWEGYLAVLENVIKYFFAHNLLNYARLMPVHLAQMNALEQDDPVTWEALKAGEFVVAKSEVPFTCLFTDQTLEQKIKELRRHGGMVGLSQDETGLDRLVTTTPHLARIVKQYLNSFPKESSSSHRNEHYQLSGCVSIRSRENALKLHHSIELHCTGNPFKEISPLKSLVSSVLVPEDAKETIFCTLARKVRNALTSSSVNDCCPHQNSRFGTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUH3</accession>
    <name>A0A6S7FUH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018968</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000338">
        <property type="protein sequence ID" value="CAB3980943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUH3"/>
    <dbReference type="OrthoDB" id="6011447at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="166"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="549" mass="61915" checksum="FA782CCBBD814A39" modified="2020-12-02" version="1">MEKEHTSNRPANKFVDYFEAHKEKQIRDKMIKEVRKQAFIDGVYGQNPIEWQNFLSKDEISASVRSEGRSHRDATLSECLDALKTCSLRLYSNVVKALYDDGPYVISPAYHMFRKTYAEWKSMSSNERKSHISAFMAYIPTDDVLLRSRVRSSTLANRDDEEIEETIPNISLLEDETPDQVPPKSTDREDGLVVSQQISNSPPPNHSDPFKPVVKSQIVLNKPRRKLSVSLEEATVLKDVLPHHLLEDAFHKAEELINEPNSITKAASDDDRLRTVKSRYGSVPKSKSFQESIAEDLLQRKPTTSDGSFVIGSVNHSNIQQSSSMSTPAGLTRYLPFLSTASVFQSTNQYVVIGAQSSLAPLMTPREPTLTSAVQYSNRDSVTFQQPSTSSATCGQIQSQPCIGILQPQCRQLSGVDIQQHSNASNHFASWNSSMSPYRYELVLLPNSVTKCYGCYQEFTQGYRMPPNNLVVRHMDRRITGCDQSGQLLFSPDFKATYYHPVKEHIMLKNPVFDGRVIVAPVLSQMLSPDHLHVVNNVLNLDFNYLQDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0T7</accession>
    <name>A0A6S7G0T7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047952</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000649">
        <property type="protein sequence ID" value="CAB3983733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0T7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="70" mass="8087" checksum="EE3F6091E1174AA9" modified="2020-12-02" version="1" fragment="single">SKTRKDKVIKRGAQRAQATKIWNEAELLINGETNEVNIEKRKSNYFDSDLIEDEKGLETEIVEADDYLTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G3X2</accession>
    <name>A0A6S7G3X2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Reticulocalbin-3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A080270</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Probable molecular chaperone assisting protein biosynthesis and transport in the endoplasmic reticulum. Required for the proper biosynthesis and transport of pulmonary surfactant-associated protein A/SP-A, pulmonary surfactant-associated protein D/SP-D and the lipid transporter ABCA3. By regulating both the proper expression and the degradation through the endoplasmic reticulum-associated protein degradation pathway of these proteins plays a crucial role in pulmonary surfactant homeostasis. Has an anti-fibrotic activity by negatively regulating the secretion of type I and type III collagens. This calcium-binding protein also transiently associates with immature PCSK6 and regulates its secretion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Interacts with PCSK6 (immature form including the propeptide); probably involved in the maturation and the secretion of PCSK6.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum lumen</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000831">
        <property type="protein sequence ID" value="CAB3985123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G3X2"/>
    <dbReference type="OrthoDB" id="293868at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005788">
        <property type="term" value="C:endoplasmic reticulum lumen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd16226">
        <property type="entry name" value="EFh_CREC_Calumenin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000104">
        <property type="entry name" value="calumenin isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10827:SF52">
        <property type="entry name" value="IP16409P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10827">
        <property type="entry name" value="RETICULOCALBIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="8" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="EF-hand" evidence="12">
        <location>
            <begin position="105"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="12">
        <location>
            <begin position="188"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="12">
        <location>
            <begin position="225"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="12">
        <location>
            <begin position="305"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00056975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00063143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00072696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3985123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="355" mass="42057" checksum="E3F20999B511240D" modified="2020-12-02" version="1">MLQHTRHNKPQLENIRLVCQTRCSVSVAWAIEMAFRCIGMFMLCLILVHAIPRPNEGKQRVHEQQPLSGEEHYKGDQHEHNADYDHEAFLGNEQKATFDQLSPEESLRRLGILVDKIDRDSDGKVSEEELKFYIDHTQKRYIYEDVDRQWNELNPDKKPSILWGEYVNRTYGFDVDDPERNTEFNYKEMKTRDRRRWERADVDKDDRLTKEELTSFLHPEEFEHMKDIMVEETLEDIDKDKDGKVSLDEYIGDMYSEEERKNNAEEPDWLKTEKEQFSRYRDKNGDGFMGKAEVKDWILPAEYDNVVAESTHLMHEADTDKDGMLTKQEILNKHDIFVGSQVTDFGEALARHDEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GB97</accession>
    <name>A0A6S7GB97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001017">
        <property type="protein sequence ID" value="CAB3986452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GB97"/>
    <dbReference type="OrthoDB" id="5946700at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46601:SF1">
        <property type="entry name" value="ADF-H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46601">
        <property type="entry name" value="ULP_PROTEASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="849" mass="97651" checksum="FBD08A9B579F0439" modified="2020-12-02" version="1">MGKPSSSETIRLREGKKRKEEKVRETNVTDNSVTKKYHWALYKRRQRARAKEEIKQKEEKSRATKSKCRCSSEVSGQSGDKIFPTRMAKKRRVDLVKSQLPKSPAKKIAVVAALIESPTTRKGLENRGLVVSGEKSEEAEVAVSALRDERDAISDTKGQRSNDSRAATQTALGFLCGETIQKKRMKTKVSKMLNINRKRIGKAFNHRTKVLKSKKSCWTYTERRTSPDISRTTPNKKDIVRRRLAPKTYVTHAKQILEKTQTEAYLEFKQKYPDIQMGQRSFESCKPFYISIPQSQDRVSCCCRIHIETRMIFQSCMEFRRQLSHCPEEYVVYKHTTDLVNNTLCPKQKNEEYHHPDCLLQKCKNCGVAGFKILEKENYSTDAAPLVKWRKFEYVIVLTMITQTKRNSNEMFACFQNLLQTYPAHQFRANWQNQQLRELVENIPIGHAVAIHDYSENYSCAMQDQIESLYFAQVQASIHVTILHRHALMNVDGIESTEENPSPVTEHIFVISPDHHSVHSARKFMAGYLKEIGYDLKIMHEWTDGCSTQYKSRHCLGDVAQSSSDFGYVTIRNYFETSHAKGPQDGAGANLKHKADMAVIKRQVVIRNAKKLYEFAESTMKDPAPSRYQSESVKVKWRIFFYDNEMLRNRRDRYFKEIKGNRSIHAVVSTDGGCSLSSRFLSCYCDACLDWSYASCENSAYVDNWEEQELEREGGHQPTVVTRGDVSTTLEAIKHLATKDAIVTLLLLTEEYYLLQVIGEVLLTEERDDWGATYPPGAEIICGYFLARKRASSSPYYYELVREKEAAVYAATVRYICPELRVSSIQAQPLLYEISEELHMDILESLHGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GGD3</accession>
    <name>A0A6S7GGD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047012</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001321">
        <property type="protein sequence ID" value="CAB3988409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GGD3"/>
    <dbReference type="OrthoDB" id="5984733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28635" checksum="2D5E9DA1B8B33276" modified="2020-12-02" version="1">MKDAVSNILEQFNNHFGKYPKFAQFDQGTEFYNKDVKLLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLNVLQDLTDNYNSSVNRSIKTTPDSVNDSNWTEVWKTLFRHNLGKPLEPKFAVGESVRISKYKSVFTKGYEANFTEELFTVTEVYHGHPNTYTIKDSADEPIIGRFYEQELYSAEGREPDFKIEKVLRRRTVKGKKMALIKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GM80</accession>
    <name>A0A6S7GM80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Magnesium transporter NIPA2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A013629</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NIPA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002193">
        <property type="protein sequence ID" value="CAB3993138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GM80"/>
    <dbReference type="OrthoDB" id="6428174at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008521">
        <property type="entry name" value="Mg_trans_NIPA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12570:SF92">
        <property type="entry name" value="SPICHTHYIN, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05653">
        <property type="entry name" value="Mg_trans_NIPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3993138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="280" mass="30267" checksum="0658B697B52DD73A" modified="2020-12-02" version="1" fragment="single">VFVLVTPLGALSVLVSAILASYFLREDLNIHGKIGCFLSLVGSVVLVIHAPQEESIATVEELSAKLTDAAFVAYACIVLLVSVVLIFHYGPRYGKENILIYVAICSLVGSLSVMGCKGLGIVLKQLFNGENELKNPVAWMLLFAVAGCIVTQMNYLNKALDIFNTALVTPIYYVMFTTLTIIASAILFKEWSNRNAKDVLGALAGLLTIIVGVFLLHAFRDVKFSIHDLPGLSKFARSSSTRPRTDGAEQVLMQNIVEGDSDEDSEVEVKVVGNSVGNHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMS1</accession>
    <name>A0A6S7GMS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon 412</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001254">
        <property type="protein sequence ID" value="CAB3987937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMS1"/>
    <dbReference type="OrthoDB" id="5980870at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052925">
        <property type="entry name" value="Phage_Integrase-like_Recomb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605:SF3">
        <property type="entry name" value="P CELL-TYPE AGGLUTINATION PROTEIN MAP4-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19376" checksum="7B4C9A6194BDCB07" modified="2020-12-02" version="1" fragment="single">VRHMHLVNGYDLQITKFQRLHYILRGIKRVKGVSTRTRLPITLDHLKLFHRILHSRTSPTHDGTMIWAAISIAFFGFLRIGEMTCSGPYNSSTNLCRSDVSFHNKKRGYNEVFLQLRIKASKTDPFRASATITIGSNSGIYCPVRALQTYLSRAPTDYAGPLFCYSNGVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSH8</accession>
    <name>A0A6S7GSH8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein amnionless</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A083287</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002162">
        <property type="protein sequence ID" value="CAB3992979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSH8"/>
    <dbReference type="OrthoDB" id="5970449at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016324">
        <property type="term" value="C:apical plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030139">
        <property type="term" value="C:endocytic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006898">
        <property type="term" value="P:receptor-mediated endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026112">
        <property type="entry name" value="AMN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14995">
        <property type="entry name" value="AMNIONLESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14995:SF2">
        <property type="entry name" value="PROTEIN AMNIONLESS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14828">
        <property type="entry name" value="Amnionless"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3992979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="452" mass="50070" checksum="16A3CE52A9C5FAE9" modified="2020-12-02" version="1">MCAFRKPIAVCLYLYIVISACFSFTLALSKTWIQDNNWETTRNWNLQRLPCAGDVVKIDLVNGDIFLNSTTTIKELAFQEESSIVLGNSAEVVFIEEHSDSNTCKGGEISFTGSGSSDWFDPNNWQTVPKLNEIGLYSQQLPCEYDVVTFPQDSSYNVKISKNVTVANVFINGKKHSEHEFQQYITSHTGIQQIQLNKTASFHITGKECADISGCVCDNGKYEDYICSFVTCPKLKCDQPVKPFAGCCSICGNLLLLNFSAGFNKASMEKQIQKYLKEFPEVIFTSTKYEEQRIQIILWDVSTSEQPKTFHAARSIRENLLADESMHIIAIEILPKKSSGSAAESKSTSVGTVTIGLIAAGAFVFVLVVLFIFILFKRKHSRGVNATNTEGETHNVENPGYLEEGVNPLYIADLEMDTFGFTNALAVGETSIDEDTGGKENPLYEPAKPAGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSX7</accession>
    <name>A0A6S7GSX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074802</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001214">
        <property type="protein sequence ID" value="CAB3987671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSX7"/>
    <dbReference type="OrthoDB" id="2384430at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.80">
        <property type="entry name" value="E3 ubiquitin-protein ligase SopA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053336">
        <property type="entry name" value="Rhoptry_Surface_Assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37320">
        <property type="entry name" value="AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37320:SF1">
        <property type="entry name" value="RHOPTRY SURFACE PROTEIN CERLI2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141571">
        <property type="entry name" value="Pentapeptide repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="13761" checksum="333851B625603846" modified="2020-12-02" version="1" fragment="single">YVKVENAKVENEKVENVKVENVKVENAKVENIKVENAKVENAKVENVKVENAKVENAKVENAKVDNAKVENAKVENAKVENAKVENAKVENAKVENAKVENAKVENIKVENAKVENAKVENIKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4G1</accession>
    <name>A0A6S7H4G1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A052742</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003176">
        <property type="protein sequence ID" value="CAB3997752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4G1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043803511" evidence="2">
        <location>
            <begin position="19"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="167"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3997752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20405" checksum="44AE439C976594E5" modified="2020-12-02" version="1" fragment="single">MDLVKCLLLVIILNYVSTEPSHSDKHEDAFHSILETLKLNNTLLRLQDVNVILTKLGLIHDCSNATKHKCVTAESLFKIFNISTTSSVNEEEFSKFAPIIVYALLPNEQHSQDHTEDGDHDEHDDDDHDQDHDGDLDDDENDGDHDKHDDDHDDHDNEKQITQNVDVYKEFLERYET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBR5</accession>
    <name>A0A6S7HBR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023171</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002291">
        <property type="protein sequence ID" value="CAB3993600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBR5"/>
    <dbReference type="OrthoDB" id="5984501at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="175"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="101"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="113"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="178"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1120" mass="126988" checksum="72845E13312DCF5F" modified="2020-12-02" version="1" fragment="single">AVEESEAGNQDSYNENVSFEQSSESEKSSESHSLEKSSELHSKESKAGNQDSYNENVSFEQSSEAEKSSESHSLEYLNNQLEALNKAVSTNTAAIKSLIENTNDNSNNEPNATIKNYTGETSKQSETQDSVDCAGQTKEVLNPNIQVSNRFSNLNTEESNADDVDVTQNDLVTARTEPATKPKQVNEKYNRRHHTGSKETKQTYHHPRPNVAIVGDSMLKHINPTQLRRSTRSFNTQIKTFPGAKVSDMEYYVKPTLARTPDHLILHVGTNDVRQSTPQEITNAISMLGQQIKKELPTTNLAISEVITRNDDPSLNTKITELNTKLSQQHIQTPTRTTYNSSSLIDLILTHINDDKTLEAGVVDLGISDHSLVYICRKISIPKEPPKIVFTRQFKNYNSHQFKEELSYYTNLDPTSNDPNVLWNEFKNNFLTIAEKHAPVRQRRVKSEHKPWLTKEIKRLMHHRDYLKRQSVRLTSSNYNEAYKRCKNKLNKLIKKTKEEYFKTKLFNANNSKESWQAINELLNKKPKTTHVTQLNVDDQVITGDTNIADCFNQYFSSIGCKLSKNVQNINVDPMTFVTPTESSFHFSCILVQETFDALNQLNSRKSPGLDGISVKLLKDTSDVIAQPLANIFNLSLQTAIFPDEWKIAKVSPVFKEGNKTDCGNYRPISVISVVAKLFEGLVYNQLRTFIADNSILVEQQSGFRSQHSTETALLGSTNEWLYNMDSGLINGVLFLDLKKAFDTVDHEILLKKLHLYGIKGTTYAWFESYIQNRKSICLMNGKKSHAREIRCGVPQGSNLGPILFLLYINDLPKCLETTKANLFADDTNLSCAGLDANEIETKLKRDLENVHSWLRSVANENGQEIRQDETDERRMSMDEAMDATLLVSEAAEECVSVHEANGMVSVPAHAANEQLNQEHLEHRQCTICKEAWPTRQNLTSELYICYRCKRDKKSPKKFSAENDMDPGIVPEQLRDIQSFLNRLPSRVADLPVLIVRRHGAENTHRDFTVRRHRVLESVFWMKTNNSFFKDIEIDRDIILSLPENGIPDELSVEELVLGHGSTSFILMRQRRKKDGAAIQDAVNEVDPLDWPSTEGNLVNEFNTDGLATGIPYIVSLWEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCB5</accession>
    <name>A0A6S7HCB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004405">
        <property type="protein sequence ID" value="CAB4002634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCB5"/>
    <dbReference type="OrthoDB" id="5984884at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="446" mass="50989" checksum="94A437EE168ADCD4" modified="2020-12-02" version="1">MCRWFFPGASTEMDLQWTVQRQQKYGFSSIACDQTIEQTCNRDSKTKGGIVGLTQNRGAINRWILAQADRSAITRKCQLMAGVAEEQRKRKDLDKTNWDKHEQAVKQIMETVTSMSNPFSPESPTELVNICSGVVADEETTKDLQNAYVKGDERLEQYFETRLLCEEPDIFSKIEKMKLKSFSTMAKSTTTRTSSGSVVTVKNDCRFWARLLVIARNRDINLEHVFTYSLRPYPRALATDSGCLVKTVKSKLLHVLEQEAEMPLIEQIPSNSATIVDGMALLQMLKARNIPETFGQLADVILKNVIDIAVYNKSQRVDFVTDRYPTVNTKNAERLHRAASGIYAVSILSDQQKVPKQWKKFMSVGSNKERLVEFLVQQWRNVRCSALQSTQLFVTNKEKCYHYYPNADAVTVEEVPELECDHEEADTKMFVQWSMHSTPQQHPMLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HDL4</accession>
    <name>A0A6S7HDL4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6570 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080506</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004351">
        <property type="protein sequence ID" value="CAB4002426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HDL4"/>
    <dbReference type="OrthoDB" id="6141723at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15252" checksum="7A2739909851415C" modified="2020-12-02" version="1">MLIARALPIMRVYIKPGGQRGYSGHCINLPQNVTELVISLPRYPKDLAIIIVKVKDALNSLPESGVLPDLTTVETDDDIVSDAGPPTGNPSEDIVYDDSTEMSRFLLVGEQRQQEIEAVRSQLSENEPIPWPWTENGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEW6</accession>
    <name>A0A6S7HEW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002426">
        <property type="protein sequence ID" value="CAB3994251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEW6"/>
    <dbReference type="OrthoDB" id="5964662at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26403" checksum="E872CBDF71DDE3B9" modified="2020-12-02" version="1">MKNIKALDQVNCDMIAELLSLPPWKVPVAAYVCKRCFKKNVGFNGTVFVAGDTVIVAVDGQEIVIQLQEFLSVNGGDNLYSLLAQGICYPIQLKDNGSADTNYWSGFVKDIRRKVILYPSCHDNLLTVVDYMRHLRCFPYELVIPVYPKVGDMVLIQGKSNEDIWHGHIQSVDLLAKMVDLFFYIPSFRNHQDDIYVRETRGRGARNTVHWQSIIGIAEGHWNNPSTWVKKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIC9</accession>
    <name>A0A6S7HIC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006439</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004481">
        <property type="protein sequence ID" value="CAB4002910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIC9"/>
    <dbReference type="OrthoDB" id="6008625at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="18232" checksum="556B549BD1549FC0" modified="2020-12-02" version="1" fragment="single">NKVVVKEKHLTPATLHRTDEEYLERKQTGLFNAWQNLKTPQKTKPVPMAKQTTSTKGHHSGDGNLPKVSSILESNETSYNKEKMHSLEEMVRYFVHKVYPYQVIAMGLAATKYGYKSKSAIASFLHKTCMNNLNIDDCNNAIDYLQYLCPYFRFCPFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLX0</accession>
    <name>A0A6S7HLX0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016233</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004927">
        <property type="protein sequence ID" value="CAB4004523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLX0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28490" checksum="1FF67C55D78B4681" modified="2020-12-02" version="1">MEELREKYPNYEEMDIEALDSELPYLDEDLRESETTEETQDINEEINYIQELRRKKILTEDLTREQLAEKFPDLSNLSYDDLMDRGDRLLNELILSNLDEDSFKEKSEELRYVRMLSNDYQRESNLNKLLNLRDKVKKRDLIKRDDRRRLQRLRLWARENAGILSAVLISSSAVIIGLVASTRNILWKVGDTTGKLDKKISELANNQIELPPVFQKIADGVELAADNIWIIIVCAAVVLLSIYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWW6</accession>
    <name>A0A6S7HWW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061912</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006904">
        <property type="protein sequence ID" value="CAB4010785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWW6"/>
    <dbReference type="OrthoDB" id="6776697at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955:SF65">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22955">
        <property type="entry name" value="RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15896" checksum="01E6F32861D22937" modified="2020-12-02" version="1">MWTDPFTVLCWIQNDKPCKQYIQRRVDQIQKLVGEDKWMFCPGQFNIADLHSRGCSGAALVKNDEWFHGPKFLKLSEENWPKHPRRNGAESEIALSETVKSVNKSTTHSLAVLEKKHTTVSVGKVVDCHRYSSRTRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2T6</accession>
    <name>A0A6S7I2T6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Monocarboxylate transporter 10-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016099</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007106">
        <property type="protein sequence ID" value="CAB4011307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2T6"/>
    <dbReference type="OrthoDB" id="5952049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17352">
        <property type="entry name" value="MFS_MCT_SLC16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050327">
        <property type="entry name" value="Proton-linked_MCT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11360:SF251">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY (MFS) PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11360">
        <property type="entry name" value="MONOCARBOXYLATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="683" mass="75211" checksum="D115BCE89D1AB3BB" modified="2020-12-02" version="1">MSLQLQVDSPYCWLQAISAFLFHAVFFGVVFSFGIFYVALLQEFPGEESEVAWITGINFSFAMIVSPLSIRLLSCIPPRVVSCTGTLLAFLGLYLSSKASSIWVLYMTFGVMYGMGGNLCYISAIWIIRKNFQKHKDTAMGLASAGSGAGGILFGIILPIFVESRGWRGAMELLSYITLALVIVSMVMIPAQQESEKSGKTEKRKLLSWKPNLKGIRSSIPSPWRNRAFVVLSITILLCAFVSSIPYCHIVNYAIHQGVARSESERLPLFISTGSFIGRVIVGKVSGFRKVSRITLYQITFLVQCLATTLCTLATNTASMVTYSLAFGVFDGAFACLLAIVVDDVFWDKSQAMKAIGQLFQMLAFPYAFGAPFAGWLYTQTGSYHVPFLICGAILFIAACLISLVRYLLQPALGIPVLTLPERIVVSPIDENSGDLVPVLRRHSNRLLSSRACSFLDLAVEVYAENYNRSSTHLAIYQEHFPRGLDTRNRSEVCSQDFLKAGDSTAIYRVENEYEYTDIDIQISGLMETGNAGIKTCFSTNQCERSSRQGDRDDVIVSVSTNQNEEFCHRGNNNDVVVLDGHVSDTSSLDYGDNNVSKRCSSGISINDAGYFSAAAPANYVDSDTQSATSQCDVRMSMGSKEGSLDSFIEIDFVENEKIEDHKGFCVNADDFEAIGKIGRVYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3T1</accession>
    <name>A0A6S7I3T1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007188">
        <property type="protein sequence ID" value="CAB4011549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3T1"/>
    <dbReference type="OrthoDB" id="5993926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23017" checksum="6D9E858C0ABEA5A0" modified="2020-12-02" version="1" fragment="single">VVAAVKALRMISIQEQNLKETTSDATVSYVQQLNGRKRNVVKLFPGCYSVGSVVKADLSEEQLAALNHLLPGAAVNVADSWSFNRIIYGEQIFYSQNHSMEKKLMGYGFIIYFLKVILANQEEQPYYLAAIKNLQLYKEEEILADITISTNNHELGGHLKPCKYDRHIPILFVHIHDLGQKQVAVDGLPSGVIYVINPPNTLEMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICP3</accession>
    <name>A0A6S7ICP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107346750</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009166">
        <property type="protein sequence ID" value="CAB4016554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICP3"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="1"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26385" checksum="B2CFDBAFD0F6E05F" modified="2020-12-02" version="1" fragment="single">TDNDATTVLRYFLTAVDEFGLPSRVRSDKGGENVDVARHMLSHPLRGVGRGSHIAGRSVHNQRIERLWRDMFSGCIHVFYYLFLDMEQCGILDPSNEVHIFALHYVYVPRINRNLQIFSGGHNRAPLSTERGKSPLQLWIHGSITNRNRGIEELWSQEDEYDYGVDWDGPPPSEPHDDRLSMIAQVEIPITNSPLSIANNNLLSNAINPLRESDVHGVDIYLEVLSFIQLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICQ4</accession>
    <name>A0A6S7ICQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044170</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004107">
        <property type="protein sequence ID" value="CAB4001518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICQ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="344"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="589"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="655"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="192"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="200"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="673" mass="76215" checksum="6670E28BA821B3E5" modified="2020-12-02" version="1">MYGDDPIVLTDLKSELDYVKNLMERRAIAETTFTEGNDGTVNISGPSGSTTVPEVNFVEDPNNVLPDVLDAFNESFDADWDEIEARLEKLNKISAINKKRDFENQAERVQAVVRVIKGKEGLILDPKNRYVRELIKRSSVRTLKDGTEVLVFRSEQGIDKSGTQIMKRGKTSKPVYSNNSPALREYKELIKKIKQTPTDPDARITSEEDTKEEPQFDGSDEEYANRENIELIDISAKLGDLPGLTMQENNELRGVLNPPDGSSIEGRTGPNGALQIQADYFNEAINETVEGVTEYNALIERIDSLKEARDRTLEQRTVEEAREAQLEDISRLRKFIDWVGKEKVGLVGIAVSTASLITALLIHARGAIAKTARATGKVAKALANLAKKAGPILVPILNAIATALSWGAKGIACKLAMEEHQEEYDDQKMEELKEKYPDYEEMDIETLDSELPYLDKDLRESETTEETQDINEEINYIQVLRRRKILTEDLTREQLAEKFPDLSNLSYDDLMDSRDRLLNELILSNLDEDSFKEKSEELRYVRMLSNDYQRESNLNKLLNLRDKVKKRDLIKRDDRRRLQRLRLWARENAGILSAVLISSSAVIIGLVASTRNIMWEVGDTTGKLDKKISELVNNQIELPPVFQKIADGVELAADNIWIIIVCAAVVLLYRLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICT1</accession>
    <name>A0A6S7ICT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008460">
        <property type="protein sequence ID" value="CAB4014823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICT1"/>
    <dbReference type="OrthoDB" id="6782434at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="364" mass="41833" checksum="3D3DAA86B077683A" modified="2020-12-02" version="1">MLKHVTTRWLSLNTSVNRILSGYEGLKSYFLSEDDEDSKISLFARLRKHFENPMTEIYLMFFQAVIPTFTTVNKFLQRGESVIHLLLDQLESFLKKLAGKFIRIDAIAAANKVCEIDFSDDGNIKEEDKMFVGITTRGKMMKMLNDGDLDPQQVQRFYDAVGAFYRAAAQYAVAKLPFHDKVLENSRFVNFEKRREHEFTMVEFFLQRFPDHLEMSVEEQEKLQEQFIDYQLLSNDNIPQHVWNDATAKTDEDGTACLFRMDVIWGHLNATKSADGTPRFDLLARVALTVLCLPHSNAEERVFSMIGKNKRAERSSLQVKGTLSSIMTVKLADLNAKTFTPPVSVLKAAKSVTYEYNKAHKRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJ03</accession>
    <name>A0A6S7IJ03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110065259</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010281">
        <property type="protein sequence ID" value="CAB4019065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJ03"/>
    <dbReference type="OrthoDB" id="5972337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008737">
        <property type="entry name" value="DUF1758"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05585">
        <property type="entry name" value="DUF1758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1208" mass="137041" checksum="EFF8892774CEB8BA" modified="2020-12-02" version="1">MRDVDNLTDLLPTHLKVDWRRKYRDLSSAEKLQPFTPLMKFLDRERSVVARLAENQHSKKRGNDNARGYSKTFHVERGAKHGQRTYYKCAFPTHRKDTINHTTEQCKEFQKLSISGKDGRYELLKQVNACFKCFGNHRKLNCPKKLPCSSCGSDQHHSLLCIPPKLPKDSGEKSKTADDGNKELASYTVESDSMALYPIHQATISDSGRKVSVFCDGGSNASYITHRAAERIKAKKVKKLSLDVTTIGNVEKTYNTWQYEFPINTSAGKKVTITAFGMERITGQVSKLDPKVLVKLFPEYDPETLQRKSTHVDVLLGCDYFGLHPKQEEARCGDNLSIMNGALGICLQGAHPDLIEETRYDTNLAKKIHDVNVKVETYKTRLDSHPEFHPNHTRECSVNVSSSYSHRKDESQIDNFIQGEELATEISPQCGGCRCNKCPTVGHTYSFKEEQELKLIQENLEYDEVNQCWITSYPWLVDPQSLPDNYHTALATLERTERTLKKDDQWAKTYKSQMDDMVDRCVARKLASEEVKSWTGPVFYISHLAVVNPHSNSTPVRIVFNSSQTHKGVSLNACLAKGPDSYMNNLVGILLRWREERVALIGDIRKMFNSVYLKALEQHCHRFLWRDLQQHRPPDIYVIQRVNMGDTPAPAISTEAVYKTAELYQEDSPQAANLLKHSSYVDDLIDSRPSKPDALKIAKEAEDILAKGGFAVKCWQFSGETQPRVKEELLKLDRPEKSVESSDQGLIMLKGTDENLRVLGLGWNPKQDTITYEVTLNFSSKRRGVRTGPNLLESDLPSALPNVLTRRIVLEQVMKIYDPLGLISPFTLMAKIYLRETWSRKLGWDDPLPAELCKLREAKFLEQQMGQLPEARLKPSPAFNHVMIDPFGPYSVRGEVQKRTSGKAYGVIFTDLVMRAVHIEAVFGYDTESFLMALSRFVSVRGWPEIIYSDPGSQLIGAERELTETWKSIDRQSLHKSGTENGLTWIFGPADSPWYQGAVESLVKSAKRAIHFAINNQRLSVQEFITVCSEATNLLNERPIGTLPSADSELNILTPNSLLLGRATAKNPGGWQPNGNNPGKRYHVVQIVTDEFWKKWTELYAPTLVIRRKWNTANRNLRPGDVVIIADRNTLRGDYRLGIVQEVFPSQDGKVRRVNVMYKNFQIGEKVQKYKGHNEAVIVSRSAQRLSLLVPVDMDQDQETKSEAKESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ING6</accession>
    <name>A0A6S7ING6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">G2 M phase-specific E3 ubiquitin- ligase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A073897</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010050">
        <property type="protein sequence ID" value="CAB4018539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ING6"/>
    <dbReference type="OrthoDB" id="5988666at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13640" checksum="D09CEE4E835C92E2" modified="2020-12-02" version="1">MVKFHGEAGIDAGGVRREYGSLLCKELFSAKVNLFEGKDDRKLPLYSSDNMCSRMFQIAGKMISYLIIHLDIGVPCLSPAVYHYISTLTIEPDRCSIEDVVDLDLKELILKVLYSNWFIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INI2</accession>
    <name>A0A6S7INI2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A048735</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004774">
        <property type="protein sequence ID" value="CAB4003968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INI2"/>
    <dbReference type="OrthoDB" id="10684682at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF26">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="10"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="199"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="371"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="524"/>
            <end position="660"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="371"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="459"/>
            <end position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="660" mass="75731" checksum="F7216ECCB0E98764" modified="2020-12-02" version="1">MSFQVVLFLKDKVSRSEDKVPHPEDKVPHTKEKLPHSENKVPHSEDKVSHTEDKVPHSEDKVLYTEDKVPHSEKKVPDSEDKVPHSEDKIPYSEEKVPHTEDKAPHSEDKAPHSEDQDKVLHTEDKVPHSEDKIPHSEEMVPHTDEKAPHSGDKVPHSEDKVLESEDKVPHSEDKAPNSEGRFLTLRTSFLVLRTYKVPHSEDKVPHSEDTVPHSEDNVPHSEDKVPHSEKKVPDSEDKVPHSEDNVPHSEEQVPHTEDNAPHSEDKAPHSEDKVPHSGDRVLDAEDKVPHSEDKVPHSEGRFLTLRTCFLVLRTRFLTHRTRFSTLRTKFRTLRRRFLTLRTRFLTLRKRFLTLRTRFITLKTSKVPHTEYKLPRSEDKVPHSEDKVPHTEDVFPHSENKSPHSEDKVHNTEDKVPHPENKVPHSEEKVAHSEDKVLHTEDKVLYTEDKVPHSAKKVPHSEDKVPHTEDKVPHSEDKGPHSEDKVPHSKDKVPHSEDKVPHSEDRFLTLTTKFISLMTSVLLHSEDKVPHSEDKVLHTENKGPRSDNKVPHSEDKFSHTEDKGRRSEDKVAHSEDKVPHSVDKVLHTEDKGPHSEDKVPHSEEKVPQTEDKAPNSEGKAPHSEDKVPHCEDKVPQSEEKVPHSEEMAPHTEEKAPHSED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRV2</accession>
    <name>A0A6S7IRV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087520</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010995">
        <property type="protein sequence ID" value="CAB4020527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRV2"/>
    <dbReference type="OrthoDB" id="5960351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="20402" checksum="6612EF59EF2B6C61" modified="2020-12-02" version="1">MAEITPILKEGDHEQANNNRPISLLPMAMLSKVCEKVVLNQVVPYLDLNKRLSTEQSGNKKHHSTETSLIETTDTILNAIDKKKVTAVVLLDMSKAFDSLDHKILMLKLHDVGMSPAALSWFSSYLSNRQQAVRINSALSGKLTVHSGVPQGSILGPVLFNIYVNDLPAVPQHCSSKIYVDDNKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVZ4</accession>
    <name>A0A6S7IVZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A001148</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011291">
        <property type="protein sequence ID" value="CAB4021149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVZ4"/>
    <dbReference type="OrthoDB" id="10052065at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007283">
        <property type="term" value="P:spermatogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08824">
        <property type="entry name" value="LOTUS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09972">
        <property type="entry name" value="LOTUS_TDRD_OSKAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.140:FF:000018">
        <property type="entry name" value="Serine/threonine-protein kinase 31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.610">
        <property type="entry name" value="LOTUS domain-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041966">
        <property type="entry name" value="LOTUS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025605">
        <property type="entry name" value="OST-HTH/LOTUS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035437">
        <property type="entry name" value="SNase_OB-fold_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002999">
        <property type="entry name" value="Tudor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050621">
        <property type="entry name" value="Tudor_domain_containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22948:SF76">
        <property type="entry name" value="FI20010P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22948">
        <property type="entry name" value="TUDOR DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12872">
        <property type="entry name" value="OST-HTH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00567">
        <property type="entry name" value="TUDOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00333">
        <property type="entry name" value="TUDOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63748">
        <property type="entry name" value="Tudor/PWWP/MBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51644">
        <property type="entry name" value="HTH_OST"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50304">
        <property type="entry name" value="TUDOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0221">Differentiation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0744">Spermatogenesis</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="191"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="198"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="227"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4021149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="725" mass="81697" checksum="2E043926021752A5" modified="2020-12-02" version="1" fragment="single">MKTTMNAPKELPTFPEVKKNIRALLISAPRGLSVDDIEHDYQAVLGKPLPFKHFRCKTALEFLKTMPDVVSPSWSNGILILKGIADDSSKHIAKLVARQRVSGSKSRRIFKAPVSTRPLVVPDHFRRNIKELLSVYPNGILGSALTQAYSRHYGEDINHSRLGFKSMSQFLNAIQDIVKIVRNPRGGYRICAIRKRTPPPVRKIPPSKPPPSHVPSSKPQSQNIPPSRAPPSRPPPSRAPSKTDTPKSGVYVIPSKRKPLTDLNSLEGVKKDENKQNVERVKDLLDSKSGVSESMKDELISVLANRPNGVWAARLPFEFKTLLGKELNVLTVGFYSIIELASALPDIFRIERPFPNGDWLLFLAAKSRKDKNITKVDVPENAIGKGVGYSQQSLPEEFDIELYVTHIRTPDCFWIQLLKYATEVTELQKNMREFYSSKESGKFMVDESLIKLGQVCVARFPVDREWYRGLITAMPSPVTVEVFYVDYGNSSQVSKSDIRLMKKDFFQLPSQSIKSKLANITPKLTKWDPSAAHRMNELTANKPLIGLASAKKDDVLDVFICDTTGKDDIYINDKLVEEGFAEFKQVNGRSTPPGLPPPEPSQKEINQQITLNTLQPTFPDYSIPLFTGFPYDFSLMHIPPVEATLPQMQEEIAPITMDEEKPTEEDLEFMRQVCEELSDSINVVVKRLKLPGDKVVHVIKFEEKPYVVRSEISALLWESDNLRSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IW99</accession>
    <name>A0A6S7IW99_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">COMMD9 N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006561">
        <property type="protein sequence ID" value="CAB4009751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IW99"/>
    <dbReference type="OrthoDB" id="64318at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037360">
        <property type="entry name" value="COMMD9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048676">
        <property type="entry name" value="COMMD9_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15663">
        <property type="entry name" value="COMM DOMAIN-CONTAINING PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15663:SF4">
        <property type="entry name" value="COMM DOMAIN-CONTAINING PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20923">
        <property type="entry name" value="COMMD9_HN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="COMMD9 N-terminal" evidence="1">
        <location>
            <begin position="4"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="9960" checksum="4A26711256CF446C" modified="2020-12-02" version="1" fragment="single">AKSKDVVGKLINDAFNYRNGKVPAVVYSSITEALGCENTEADQLFCSLQQLVKNCLYENVADRQSIAALFPGDFHKNLKDLLAKIISDHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXY9</accession>
    <name>A0A6S7IXY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032849</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006721">
        <property type="protein sequence ID" value="CAB4010242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXY9"/>
    <dbReference type="OrthoDB" id="5973611at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="59" mass="6984" checksum="99383B812FB04592" modified="2020-12-02" version="1">MYEFDDELLDDWQEILQDNDMFDMIVENLSLSQLQDSLIDEHDMSSDSQDEEIIVSVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1V1</accession>
    <name>A0A6S7J1V1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075564</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012920">
        <property type="protein sequence ID" value="CAB4024247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1V1"/>
    <dbReference type="OrthoDB" id="1731983at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="353"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="369"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="420"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="547" mass="62506" checksum="60752A8B39364D71" modified="2020-12-02" version="1" fragment="single">MSKAITQNRNESELNGKRDEISRSTEELNSIEEDLNLTESEFNRNNSLVNLTKPSSDSELIESSILMIANGNLKWQKNFEELRLAVDRLQLQSSKGWTSLGGYCKLFESGEVSIRWYSNSKTLTVKGEKADEIKEKLLNFDRKLSGEVKVYSESPKVANILESTDRNLHLRSRNCSVNNEMTRTIGQSYSTNTNDANYNKSPEFYEINSKMENYSQNATRKLDALAEEISTIKENKENAAYGILIHEETVNDLKKERYELNRENEDLKEKNKNLFQSLSEVRAKQKKKKIEDLESENKNLRAAARTLQEDLDKSNREKREFAKVKKRSENVSITPNTTISYESKNQFEVLSVSDHEEEVNKSASDLDQSEARHHNTDISAKHGDKPRQSGDKPNQRRSGQNSRKIERRQQSKGNIQERQSNLDEQKDKREPKATKQSQPNIVILGDSMLKHLNPRRIQQGIDQKISIKTFPGAGVDEMTHYVKPTLQKKPKHIILHIGTNDLQTKSPDALIKAVTKLGEAITQEISGIELTLSDVITRTDDLQLANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JD17</accession>
    <name>A0A6S7JD17_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002133</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015705">
        <property type="protein sequence ID" value="CAB4028767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JD17"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15056" checksum="FF65CA3379E27195" modified="2020-12-02" version="1">MVERLLKFWSLLFIVCRMLDIGCDFYYIYCSKDLNSVQDAILAMICMCGSMFNWVFLGRLFNALGKVLQPSDIGKINVLKVLLPQLNFFVLEGVVNVLQAGIVSYNMLQEAAGISWIMGSHGVAVVVLLCSAFAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLP6</accession>
    <name>A0A6S7JLP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026928</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007328">
        <property type="protein sequence ID" value="CAB4011968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLP6"/>
    <dbReference type="OrthoDB" id="6104512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15400" checksum="2189D9E0E6C57A21" modified="2020-12-02" version="1">MPVLMKDEKKYSDCVDVLDQLEEWTQDIYKASGMCKDQPDQPSVSPPLVEVSTRPDQPRSHIPPAASDFDPLQGVKIPCFGDELTRVRFAGALDLRSGCHTAKQRLDHLYPYRIVGWHTKRSILKVSLNFYLLEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JM68</accession>
    <name>A0A6S7JM68_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transmembrane adipocyte-associated 1 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A082897</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0359 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018142">
        <property type="protein sequence ID" value="CAB4032118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JM68"/>
    <dbReference type="OrthoDB" id="10027388at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018781">
        <property type="entry name" value="TPRA1/CAND2/CAND8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15876">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN ADIPOCYTE-ASSOCIATED 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15876:SF8">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN ADIPOCYTE-ASSOCIATED 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10160">
        <property type="entry name" value="Tmemb_40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4032118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="36801" checksum="FE25FF857843318E" modified="2020-12-02" version="1">MERNDLLPTLLLTTQNASSIGEPIDYGVCREMLEKSIGNTCITYWNLALLAPNVIFLIFLAYHIGLFYRMFQRHNFPMVKTLLILVSLVCVVNVIRGFIASITRAHSPDDNIANESLWLLLRFLVLAVEISVIGYGLFGNGRGKGVGKRVISLSFFLALVYATIQSLLEVYTPDRTRIFKNKYMMFQHGGMLFWFITSCVFFVIYSSIVILPQTNCLYGRGFLSLPSNRAFYRYAAILCVVNLLEAIGSLLVYYRKTYGLCILNVAVLLFYALFAPLVYFTFLQKSFSLLKKSNLRINDGMANYTVVESESSTSSADGNDNNSLII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXJ5</accession>
    <name>A0A6S7JXJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008279</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022127">
        <property type="protein sequence ID" value="CAB4036517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXJ5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="32183" checksum="35198124806B6AC5" modified="2020-12-02" version="1">MRKELLTVIEECAESVKRFENKVNELNSVLEARNSKIQTLETEISSLKRQSKAIHQRFKEEIKGNAEELTSLKGKVETMGNKNPVAEPQSIDANPSKHGQGADPVENNRKPDTQGVETLKNTTVKKSLVQKDREQAEITQGGGQLNAPNESGNKVTGLNTIHENNETNNANDVQFVGVERQRTKRVFLGGIREGVSSENIREYMMKRNINPTFERLMQSKRKGTTSVRINVVAKDFDVVKETPFWPDGVFARPWLSLAKWQDRLSTKEQQLLDSSHRSKPETNST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K494</accession>
    <name>A0A6S7K494_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">3'(2'),5'-bisphosphate nucleotidase 1</fullName>
            <ecNumber evidence="15">3.1.3.57</ecNumber>
            <ecNumber evidence="3">3.1.3.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">3'-phosphoadenosine 5'-phosphate phosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Bisphosphate 3'-nucleotidase 1</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17">Inositol-polyphosphate 1-phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A056947</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>1D-myo-inositol 1,3,4-trisphosphate + H2O = 1D-myo-inositol 3,4-bisphosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:70319"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58414"/>
            <dbReference type="ChEBI" id="CHEBI:83241"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="10">
            <dbReference type="Rhea" id="RHEA:70320"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>1D-myo-inositol 1,4-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15553"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58282"/>
            <dbReference type="ChEBI" id="CHEBI:58469"/>
            <dbReference type="EC" id="3.1.3.57"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="12">
            <dbReference type="Rhea" id="RHEA:15554"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>3'-phosphoadenylyl sulfate + H2O = adenosine 5'-phosphosulfate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:77639"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="ChEBI" id="CHEBI:58339"/>
            <dbReference type="EC" id="3.1.3.7"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="14">
            <dbReference type="Rhea" id="RHEA:77640"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>adenosine 2',5'-bisphosphate + H2O = AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:77643"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:194156"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="3.1.3.7"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:77644"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>adenosine 3',5'-bisphosphate + H2O = AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10040"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58343"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="3.1.3.7"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="13">
            <dbReference type="Rhea" id="RHEA:10041"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 18">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the inositol monophosphatase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.57" evidence="15"/>
    <dbReference type="EC" id="3.1.3.7" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020023088">
        <property type="protein sequence ID" value="CAB4037444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K494"/>
    <dbReference type="OrthoDB" id="411145at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008441">
        <property type="term" value="F:3'(2'),5'-bisphosphate nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004441">
        <property type="term" value="F:inositol-1,4-bisphosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01640">
        <property type="entry name" value="IPPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.190.80:FF:000006">
        <property type="entry name" value="Bisphosphate nucleotidase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.540.10:FF:000023">
        <property type="entry name" value="Protein CBR-TAG-231"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.540.10">
        <property type="entry name" value="Fructose-1,6-Bisphosphatase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050725">
        <property type="entry name" value="CysQ/Inositol_MonoPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020550">
        <property type="entry name" value="Inositol_monophosphatase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43028">
        <property type="entry name" value="3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43028:SF5">
        <property type="entry name" value="3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56655">
        <property type="entry name" value="Carbohydrate phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00630">
        <property type="entry name" value="IMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0452">Lithium</keyword>
    <keyword evidence="7 18" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 18" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="18">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00040342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00041815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00044465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00044466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00044478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00044479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00044484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00044519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00044544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00044554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR600760-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB4037444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="311" mass="33550" checksum="FD4500BA02BDE29A" modified="2020-12-02" version="1">MAVASSNAPFILRLVSCSVAAANKAGNIIRNVLQNGDLAVVDKGLGTGKFDPQTIADRAAQKCIITSLQKKFPAIKIVGEEEDCSEIIEVAETEDDSSVLQQQCPAQLQNCKEDEVVVWVDPLDGTKEFTDGLIEHVTVLIGISLDGKPIAGIIHQPFYKARENPNITGRTIWGVQGIGSFGYEKSTHDGLIIITTRSHSSKVNLEAIQAMNPTKIARAGGSGYKALSVLLGETDAYVYASKGTKRWDTCAPDAILRAAGGNITDVLGRPIQYKYNTDYMNYTGLVATLENHETLLSKIPDNVKDSISKNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8R0</accession>
    <name>A0A6S7K8R0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A003051</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026161">
        <property type="protein sequence ID" value="CAB4040008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8R0"/>
    <dbReference type="OrthoDB" id="2286242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13530" checksum="4B831960148CD440" modified="2020-12-02" version="1" fragment="single">MMMKLQQYDSTIVYKKGSEMLLADTLSRHHLDNSTDEARSVDSDLDQVDSLDEINEILNCETATIFQDHTTKDQDLQQVKSFIQPARMARKLQRSISNNYPVHPSTRRINHTRRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KLV1</accession>
    <name>A0A6S7KLV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012149</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033509">
        <property type="protein sequence ID" value="CAB4043914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KLV1"/>
    <dbReference type="OrthoDB" id="10065482at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="19954" checksum="8C231D5241D08600" modified="2020-12-02" version="1">MPHVRALADEDHSLDLLPHDSLTTLKKFKTTLKKILWEGMGNCTDSMFADHEGKSILEFKQSNLTVLSAIDEDSLDKWFELHFTSGVVVKGRLCEDHVIAAFYNNARIYGSLGKELCIALDIALAAGGCEAVVEGFYSVIGAHKTNGGQSNNVLVKRAIVDWSLPNPLSCPKTNGRDRSALH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L1X8</accession>
    <name>A0A6S7L1X8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018060</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018397">
        <property type="protein sequence ID" value="CAB4032432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L1X8"/>
    <dbReference type="OrthoDB" id="6144440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17628" checksum="D5ACD7899C5E7A9A" modified="2020-12-02" version="1">MVAVYLYKRHDESKSYANVVDAHTTLKWFHTFEPYQIGNPFDIPVCRNILETSKSDKRIFLTKSPIFRPLRFFRSSNLFKLYGARLSYTRCRENKYGSGLHSLRSGEATAAANDGNVTERQLKLHGCWKTDIAKDDVHDSVKNRLLVTENLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LFY7</accession>
    <name>A0A6S7LFY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083027</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021767">
        <property type="protein sequence ID" value="CAB4036182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LFY7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="188" mass="21051" checksum="C4A3DC8860A401B8" modified="2020-12-02" version="1" fragment="single">MAVSLVMISSATKLMLAAVFFVFVALNINIPLATSDGCFPVVLKLEDEKSNANLTYCDCCMLNATNGVMYRNVTRARAMAIDIAIYESEWVSSTNVYCTEAESSREWDFINVNLVCELSIPNFYFATTYYNAETCVQWLTARQKHKIKWSQSRIPYYVNSIAGFQIILSGDVESNPGPNRSNASKSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTZ5</accession>
    <name>A0A6S7LTZ5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">XK-related protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A010330</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the XK family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035451">
        <property type="protein sequence ID" value="CAB4044572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTZ5"/>
    <dbReference type="OrthoDB" id="6136301at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018629">
        <property type="entry name" value="XK-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050895">
        <property type="entry name" value="XK-related_scramblase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16024">
        <property type="entry name" value="XK-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16024:SF6">
        <property type="entry name" value="XK-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09815">
        <property type="entry name" value="XK-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="165"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="227"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="257"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="289"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="327"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU910716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4044572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="389" mass="44222" checksum="DE14B1C4035DF037" modified="2020-12-02" version="1">MRGKAQLFFLVIGMLIYILDLTSDIWIAIQYYRNNESKWFAPTLSFIIITIVITNVAACLHASKDSIEGPCKWLWVFCACCPILSRYMEELTYWKRANLDSSLCGEACQKSTCRECENLLEKKRKLAKSIYSLAWLHLIQALTESAPQFCLQLFIMLEQWDFPCFTVLSTSVSLLSLAWCITALEQARETKNNNPSLAFAFLAWQFFALASRLSAIVIFAYVFQYHVFSILAFHWFVVTIAIAIHRKDEFKGEGVGPWIFMLSASCCCVYPLLVFASEPLLAFCKNRRFYTFIISIILAVENMIMLALTIGITKYGRRKISMADTDVLLPVALACVLGGIALETVFCVAYYKCCCRKDTDVSKDRQKIDDESPGNRVSTVEINAGFNRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5N5</accession>
    <name>A0A7D9D5N5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075378</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000012">
        <property type="protein sequence ID" value="CAB3976771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5N5"/>
    <dbReference type="OrthoDB" id="6616134at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016132">
        <property type="entry name" value="Phyto_chromo_attachment"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34153:SF2">
        <property type="entry name" value="SI:CH211-262H13.3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34153">
        <property type="entry name" value="SI:CH211-262H13.3-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50046">
        <property type="entry name" value="PHYTOCHROME_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="199"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="130"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="220"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="243"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="523" mass="59679" checksum="F680855CE1B68B84" modified="2020-12-02" version="1">MDRFAIVEFTEENAVDVVPESWIEKQDEVFYCYYPRSNIQTRVRRMELPDKKLWSSYRIRILSYTDKYDKAVKRAKKAEETSQIETSDSEQEIGQTRKRRRQEVNYEEYEHDEENRKTKPIQTKKARHPKPCENAHESNRHGNMNQIGKSLLVPNPPAFLPRTPLSHRKTNSVGQVSGLHLYSTPSMNRSAEVIENRNTEQVQAKKAQHPKPCEDIPRPRTQSENMQRNDSSLLMPNPPAISPRTSLSHGKTNSVGQVSGLHLHSTPSTTRSAEVIDELQFSPPGDDDCIKEIFQSISSELQEMANDGQATSKNSESTQNYRTNVIVKLDTIIENQNEILVYLRQQSSKTQAAYDVVLEDVLPRPMDTLGEIQKLCLKLEQSKFKNTLVSYLAAQCGHSLGDTVRRIMAKLGTNKLWSLYSFKGRKGKLAFKGLNLCNVIIKSCVKCHEKATEPNIEEQISETLKHAPNKPGGSRYQTIKVHNDKCVFVDVTIDYEHKISKEVVAVDERDSLINDHRVEMGSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8L1</accession>
    <name>A0A7D9D8L1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073829</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000200">
        <property type="protein sequence ID" value="CAB3979457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8L1"/>
    <dbReference type="OrthoDB" id="10515569at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="327"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="45"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="100"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="130"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="151"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="186"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="221"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="350"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="547" mass="60890" checksum="9059FEC956322071" modified="2020-12-02" version="1">MVENPKGQENPFANAFQIQENEMPHIHDKIKSEIIINNDNDNDNDNGNTNNNNNSNSNSNNNNNNSNSNNNNNNNSNSKSNNNNNNNNNNNDNDNDNDNNNESNINSNSTNSKTNNKQIHQAIDNETATITATTTTTQTSIAPTKGRKIPTKSTKNIKNNNNDNEKQINNSKQKINKTRQTKFDQSKTTMQFPKPSTTNQKPPNIKAKGISRHYSIRENQHTSSIKEQTTSRINTGSKTISSTNKAGIGPKAQNSLTGCTSASVDTKWHQVIGKDKTGLRGTRIGNKGKQGNLNSTHVSVQDLEKILGVNLTELKEVIKTYKSEKISTAGDCPGQNDAAQGSPGMVGDNLVDRKNSQDECKEDGTKERKSEILDNKDEVSSDSGVSEPDAHSTCSQPHYITLKAIVKRKEYLEGQIRKLVDHVVVMGDHKRDIQFVHDLFDLHSEGLAKVERSNGGVACVTNLKRILACQLRETDEEEFRAKLKSLEDLGIPNFSEINARIEKLRKRIRHTLDDERKCRSKGVQKLRFEIGKVQGMCEAVLDLVYTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBP3</accession>
    <name>A0A7D9DBP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085952</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000309">
        <property type="protein sequence ID" value="CAB3980633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBP3"/>
    <dbReference type="OrthoDB" id="5986564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="384"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="386"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="633" mass="70262" checksum="58851854EDD09AE3" modified="2020-12-02" version="1">MFADDTNVSTPAESLEELQVHLNSDLDNIHQWLVANKLTLNVSKTEYMIIGSHSKLSKITENPMIRIEETVTTELESKSEVEPNSKSQSNINDFLNPHVYAVKECNATEVEGSVHLSNRSNRMDTVPELPSATDIAAEVVKLMKEMKVDDTFEEKPKELLDKQQIANDLDEWRKIRSITELATQVPCLEFFYDEVMSESVTCCEVCFKASTGKENIKNMSPYEIARKKNPFNHGDPVTGIWNGKERTQQYLKGGNSSWRLLKSVFRSHLLGISNTSHGKHHYLAMKELEREQEYDCGVDIGQQQHSRKQMLAMLVAAEDIVDEKTTNVLKTELLCTQVYPHFFGVLDKGTVNRRTSQASYNVFMYNGKRCAYPVGVPLVYTRNNEGEESSDSEDENESEEEEEFPDVSGGNAPELASNFLNTIKLKLKLDEEDLTRYCGTSADSPYQAYEFGFTIQGETGQHRIPEELRFCQAAIWDATHLLNLAATDIKEETFGESQDFFTNFIKRANEFNHMMGTEKGFAQLELTTSLPTTATSLPTTADEGNIDHTSAAIVTTSSTPTTGASLSEATVQQIVSAVSQAVLASLNATGATSQSTSASETRELPVVASGIVSLSADATYAGACSICFTACFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DCK1</accession>
    <name>A0A7D9DCK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077877</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000450">
        <property type="protein sequence ID" value="CAB3981977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DCK1"/>
    <dbReference type="OrthoDB" id="8055110at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="41099" checksum="D42EC1ACCFC47217" modified="2020-12-02" version="1">MSDVYTNIKDDIREVENLCLKTRNHWRKEARKTNDSLAWASYRSLRGEVKRDLRVAEREYIVEQIRTNPNNTRCFWKTIRSCIPKKSANQRTFAKDDIVVANEFNSFFSSVGQTAVSNIKSLAEKCNYDLSQSEFKSTSHPESEQFMFETVDCEKIREIVSSMPTNKSPGIDQISMRVIKDSLPAILPTITSIINTSLVSGIFPRDWKMAVITPIPKDGDDEQANNNRLISLLPILSKEISLDRNILDRDYTDSILNAIDGKELTAVVLLDMSKAFDSIDHNILLLKLQDVGLVGVSPAALNWFSSYLSERFQVVRINTVLSDKLPVNSGVPQGSILGPILFNIYVNELLTNNSSKQFIQDVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DDQ3</accession>
    <name>A0A7D9DDQ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004752</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000535">
        <property type="protein sequence ID" value="CAB3982717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DDQ3"/>
    <dbReference type="OrthoDB" id="6007253at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="23284" checksum="3E2DC2A3515A4F2B" modified="2020-12-02" version="1">MAILVSAIETRVLLEQLSSNWKMERVDAAPTKAQRQQLQAATGVSGVSILFQLYKLYQFNPVLDMSIDRMHLTFNMLKREFIDKMWADIRENADEEVNARDPEVGGLLDHEEFKHALECINWTKEEKEKGVGGIRSLTDKLGSWKSNEFKSSVAKEVLAERIPSKAYDCYMLLCDAVQMLYSTQLQVTGWENHRIERLEKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DE80</accession>
    <name>A0A7D9DE80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086306</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000626">
        <property type="protein sequence ID" value="CAB3983545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DE80"/>
    <dbReference type="OrthoDB" id="5984281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12530" checksum="95DE2FAF85706837" modified="2020-12-02" version="1">MARKSIGIAELDFENGSLAESWKQWKQTMKLTLQGPLAEKEEKQQCGYFLLYIGQKGRDIYNTWALKSAEIDKIDALFDRFEAFVILSRMSRCYATSLIREINEATRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSR5</accession>
    <name>A0A7D9DSR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034675</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001930">
        <property type="protein sequence ID" value="CAB3991861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSR5"/>
    <dbReference type="OrthoDB" id="7701049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="53921" checksum="0651EB9B755E7756" modified="2020-12-02" version="1" fragment="single">MSAVHEFIPSKYVDPRRSPPWITPTILHHIRKKVTARKRFLSRGTDYLKAKFNKLRAEVKKMIQNSRESFFSSLGNTIQINPKRFWSVFKIKSSSGNIPNSVTRSDTNNPGTRLHANTPHDIATMFNEYFHSVYTCFSDQPPPSQSGSSSPLSSISSIDLSLEEVYQALLNLDPSKAHGPDGFPSRILKECALQLAPSLHYLFSKSLRLSQVPTEWKLANIIPLLKKGNKDHVENYRPISLLCIISKTLERCVLNHLSHRIQSNIHSAQYGFVNGRSSTAQLLSILNTIGKNLDQGLQTDVVFMDICKAFDSVDHSILLQKLHDFGFSGSLLLWFQNYLSGRFQRVTVHGATSTSLPITSGVPQGSLLGPFLFSVYINDLPNNISTSTGVGLFADDTKLYRCVQNPCDALVLQDDIQGLLCWSIENRLRFNQSKCKVLSITRKKSPLIYPYKLDNDQLLVSNAQVDLGITISPKLLWNDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DU62</accession>
    <name>A0A7D9DU62_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein LOC111330135</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A031837</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002134">
        <property type="protein sequence ID" value="CAB3992839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DU62"/>
    <dbReference type="OrthoDB" id="5955016at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027805">
        <property type="entry name" value="Transposase_HTH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13613">
        <property type="entry name" value="HTH_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="88"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="136"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="100"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3992839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="462" mass="52347" checksum="41DE6617A505D704" modified="2020-12-02" version="1">MNKSIGRGKRNCCIIGCSNSDYQLLKWLNSHPCSRPSIEECNCEPPFKLFPFPGEKTDPESKNQWTRLVNRKNSNNSKKVWQSNKNSRVCSSHFVDRKPTTANPNPTLNLGHQNVKIPQSRKRPAERNSIPVLPKVKKPQANDGHEENTGVPEQMTIPPIELPQTPVNMGREGLQANSGSKADLPTSCKNCGSKKKNIRQMTNVLTKKNEEISRLNKKNLAQKKTLSFGPHMLVTDQKVKFYTGIPSRKAFDSLYGLLLPNLRKLRRWHGPSKVSSPVKHFAASPKKAGRTRKLYGKNEFLLTLMKLRLGLLNQDLGDRFHISTTTVSKILTTWFSFLSADLVPLLLFNPPKEAVQLTLPKSFKTPVVMADKGFQIREDLLLRRAELHIPPGRRGAEQMSKAGVKKTQEVANRRIYVEMAIRRLKSFRILKYELPLTLISQIDDIIFICAALCNLYPQLAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXJ3</accession>
    <name>A0A7D9DXJ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002753">
        <property type="protein sequence ID" value="CAB3995873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXJ3"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1011" mass="116149" checksum="25882D4A9676C2FC" modified="2020-12-02" version="1">MDGVHSGYKGLFTAKIYGRKFLRRRIRYYSHSSASFNPCILVLELSGDIHPHPGPVSNPRRSGKGRHTLLVLTINARSLNNKLRDFQSMVYTSDCDVVVVSESWLTPSVLNKEILPNGYDIYRCDRQDGKRGGGVLIAIKNEIESKRRKELESNCEIVVCEIHISKGMKLIICGFYRPPSSKNEYLMNFGNSLENIVRDGTPVILCGDFNFPEIDWELQVAPGCDNLPNIFCDMINDAFLSQMNYSPTRVSDSTSNILDLVFTNLPDQLYGLSTFDCQLNTDHLGISFFLKTTVKRTKFSRSVYNFKKADFDGLRETLAHTPFEMLLDCDDIDQCWEKWKDVFLTTAEMFIPKCKVRDAKAPKWIDGDVINLSKCKNRMWKKAKKSNLTSDWENYRTIRKQLKTLTKKKYREHLATMQDELKDNPSKFWSFYRATTKTARIPKIVHLSGEKASTPSAKADMFNKFFASVFQKSDHGAEINHDVFHPRVDELHNLHVTVEDILSVLKAINPSKASGPDQIPGRILKECANEIAPSLTQIINLSLRIGMLPKEWKWANVVPVFKKGDVENVTNYRPISLLSVVEKVVERCVFDKFFPFVASRVYHLQHGFMKGRSTVTQLLEIVHLLTKSIDEKGQTDIAFLDFSKAFDSVSHLSMMDKLYAAGIRGSLLKWFGSYLHDRKQRVVLDGKCSEWLDVTSGVPQGSILGPALFVLFINDMPDVISESGTLALFADDAKCLRTINSDADCVALQRDLNNLTTWSAEWKLPFNIDKCTISTVTTKRNPVSFIYEIANCVIKRVNEQRDLGVHITSNATFNEHIYIQINKANKMLGFIRRTVSREKCLLPTMKSLYCALVRSNLEYASEVWSPKSITLIKKIERVQRRATRILLPELEYVERLQQFDVPPLLHRRELKDLTTFYRMKQGLYNCNVDSYVEFCSDTRLRSTAQGKLKTPKCRTEHFRATYFNRITYLWNNLPEQIRTFNGSVAIFKRSCREYYKTIPYDPDRPRVTWDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E0J7</accession>
    <name>A0A7D9E0J7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Hephaestin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A014219</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multicopper oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002752">
        <property type="protein sequence ID" value="CAB3995866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E0J7"/>
    <dbReference type="OrthoDB" id="2121828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04200">
        <property type="entry name" value="CuRO_2_ceruloplasmin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.420:FF:000009">
        <property type="entry name" value="Ceruloplasmin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF504">
        <property type="entry name" value="PLASTOCYANIN-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="9">
        <location>
            <begin position="50"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="8">
        <location>
            <begin position="216"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3995866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="40314" checksum="E57C739218405FE7" modified="2020-12-02" version="1" fragment="single">RGSGIIKLDAMVYTKSGPNRIGRVYNKVFYREYTDETFTKTKTHPEYLGILGPILRAEVGETIKVVFKNLASRNYSVHPHGVFYDKKNEGALYLDNTTFKDDDAVPPEQTYTYTWEVPARAGPSSSDNDCLTWIYYSDVNPTMDTNSGLVGPLIICKMDTLSADGSKVKNVDHEYPIYFSVMDENLSWYLDKNIKEFTSNPGSVDKEDEDFIESNKMNIINGRIYGNLKGLSMVQGQTINWYLLSLGTEVDMHNVHFHGQTVLARTTADHREDVIDLFPGVFMTVKMTPDSVGRWLLHCHVNDHMVHGMEALYDVAETAPITPMASTEKPSSSSSLLVVNTFIFLAAYFFFICSAFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9P7</accession>
    <name>A0A7D9E9P7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4806 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059407</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005143">
        <property type="protein sequence ID" value="CAB4005258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9P7"/>
    <dbReference type="OrthoDB" id="5989442at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032071">
        <property type="entry name" value="DUF4806"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34153:SF2">
        <property type="entry name" value="SI:CH211-262H13.3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34153">
        <property type="entry name" value="SI:CH211-262H13.3-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16064">
        <property type="entry name" value="DUF4806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4806" evidence="2">
        <location>
            <begin position="193"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="25"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4005258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="34005" checksum="ACF02A55F58F07C4" modified="2020-12-02" version="1">MSPQYPPAPRQLAPMMPVPPTYFMNSQQSSDMNNQQLSSCSQTSGQNFSHGFHVTEDTFPERDLISGVNQILRNDIFEDQPLNAPSLNLDLLGTGSSSCPASIGNEASRSSNRRQEQSDGSSPSMVSDETPKLSHRNLRQEQPDNFQQAVLSKLDVMIEKQSECLSMLQVLLGAVKGVGGQDMLEDVLPKPKDTCEELEEMSAGLSDDDVRKKTLNLLVALCGHTCAESVRRIMAKIGTNTLWSAYSLKGRKAKRAFKDLAMSTLVIKACLRIHKGTSEKEIEEQIAEYLKHAPNKAGGSRHKDRKNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDA4</accession>
    <name>A0A7D9EDA4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005860">
        <property type="protein sequence ID" value="CAB4007635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EDA4"/>
    <dbReference type="OrthoDB" id="5983166at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24374" checksum="FD10491C78F72D70" modified="2020-12-02" version="1">MRVYALCHSLGIALCHKIKTVRVYLRTKKLSIDLDSDGEMQDGPFDSISQPQEDTAQQQSPQTFSLIGSSEDRKTLKEKQDEEYQMSLEMDKKPTGNEHYEICDKEPKEQLQDAHKARVVPEPCTNFVAVKIRHPSLGLLSRRFPHNTKMHAVYDWAGSLCTDPAYFILTDPSSGNIIQPSSLVYDKYTLNMVESSNRTPSLLESDDEVQFLGFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEK1</accession>
    <name>A0A7D9EEK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A067367</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the integrin beta chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005771">
        <property type="protein sequence ID" value="CAB4007344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEK1"/>
    <dbReference type="OrthoDB" id="5956021at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007229">
        <property type="term" value="P:integrin-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015812">
        <property type="entry name" value="Integrin_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002369">
        <property type="entry name" value="Integrin_bsu_VWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00362">
        <property type="entry name" value="Integrin_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01186">
        <property type="entry name" value="INTEGRINB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0401">Integrin</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4007344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="10444" checksum="D0DA45A7F533707A" modified="2020-12-02" version="1" fragment="single">MDLDIFWTVRRRDAQKVRFDGFVQDYPTVHQVYQKLKESDIQPIFAISGNESTILAYQAIVSNWDDISATLEELDGDSSKIIDLIQRSYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EN99</accession>
    <name>A0A7D9EN99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A044209</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007329">
        <property type="protein sequence ID" value="CAB4011971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EN99"/>
    <dbReference type="OrthoDB" id="6516201at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007154">
        <property type="term" value="P:cell communication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000653">
        <property type="entry name" value="Putative Fibrillin-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2030">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038081">
        <property type="entry name" value="CalX-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003644">
        <property type="entry name" value="Calx_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052235">
        <property type="entry name" value="Nephronectin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24050">
        <property type="entry name" value="PA14 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24050:SF28">
        <property type="entry name" value="UROMODULIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03160">
        <property type="entry name" value="Calx-beta"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00237">
        <property type="entry name" value="Calx_beta"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141072">
        <property type="entry name" value="CalX-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4011971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="447" mass="49137" checksum="5BFDB166F065248B" modified="2020-12-02" version="1">MRTRTYPCSANASCINTFGYYTCHCMAGFTGNGFTCLDINECVLRTHACSGNATCTNTVGSYTCHCKTGFTGNGFICTVVTVILEGLQIDVTESTSNATVLVKVTGIRERNIHLNVFTYDVTAMVDMNDYETRSELVVFKPNNFQVPFSVRIFDDNLVEHTEQFGVRVTSSDPEVNVVNGDILVSIRDNDKITLSIDRSVYRVNEDDEFVSVKVVVTGKTAVAITGSVLRTADETAENPHDYTSVSQNLEIMPGEDSKNVTIAIKDDQLTEEPENIIVELTATNTNQISIARSSAIVQIHDDDDSSDPSSQEKSIGIIIGVSVAAVIVLVTVILIVARFICRRKEGPDNTRNIGDIQNAAYEGDKQPKRPKMPKKPHSEHVYDEPTVYAQLDSSTRVPIDANYQSLNKEGCGQLKINQNESVQPYASLSNERYKVPGKPAQGIYMTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EQD2</accession>
    <name>A0A7D9EQD2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">THAP domain-containing 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A007786</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007980">
        <property type="protein sequence ID" value="CAB4013679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EQD2"/>
    <dbReference type="OrthoDB" id="5982876at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026516">
        <property type="entry name" value="THAP1/10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600">
        <property type="entry name" value="THAP DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600:SF11">
        <property type="entry name" value="THAP DOMAIN-CONTAINING PROTEIN 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00692">
        <property type="entry name" value="DM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="208"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="214"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4013679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="33912" checksum="EBB046A7E93E8DA9" modified="2020-12-02" version="1" fragment="single">MASKGESSHRGGKYCVAGGPNNVSCTNGQHTKEISIHHFPNATKEPKRHAKWVKFVRKHRPGWIPSETSILCGSHFEDSCFEQNRIIAASLGIKTRLNRDAMPTLDNANEVMQIEESLSNRKRRKTMRDITLQVGEQSTLEESTSSKVTEIEDIAYSSNIHVSENTHEPFLPNEPECHNCTKLKAKVVKLQKKVSYLTKRRQELISRTEKNVENDEDETDVSDSEVCSDTRTTDTLDSLEEIDVSDDDVDDVDWEINLEDDVDSSASDDENNTVPKNLVRISEGTKPGDEPKFVIFYNML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ET18</accession>
    <name>A0A7D9ET18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085383</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009089">
        <property type="protein sequence ID" value="CAB4016362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ET18"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110296">
        <property type="entry name" value="Oligoxyloglucan reducing end-specific cellobiohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="27728" checksum="290F080A2F095E30" modified="2020-12-02" version="1" fragment="single">SNVNNLAFSLDRGKLFERPRTQESRETAIVNFIYQYNVNNLAFSLDRGKLFERPRTQESRETAIVNFIYQYNVNNLAFSLDRGKLFERPRTQESRETAIVNFIYQYNVNNLAFSLDRGKLFERPRTQESRETAIVNFIYQYNVNNLAFSLDRGKLFERPRTQESRETAIVNFIYQYNVNNLAFSLDRGKLFERPRTQESRETAIVNFIYQYNVNNLAFSLDRGKLFERPRTQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ETD9</accession>
    <name>A0A7D9ETD9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Deleted in malignant brain tumors 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A002407</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008580">
        <property type="protein sequence ID" value="CAB4015102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ETD9"/>
    <dbReference type="OrthoDB" id="536948at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.250.10:FF:000016">
        <property type="entry name" value="Scavenger receptor cysteine-rich protein type 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071:SF18">
        <property type="entry name" value="DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071">
        <property type="entry name" value="SRCR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00530">
        <property type="entry name" value="SRCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00202">
        <property type="entry name" value="SR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="disulfide bond" evidence="9">
        <location>
            <begin position="80"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4015102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12816" checksum="D96C3B41B349765D" modified="2020-12-02" version="1" fragment="single">YSDLQIKLVNPISNKTAGRVEIYHPSFGWGTACSLGLPWTMVEGGVVCRQLNFTGANAVMRKSYPYGRGSVPVLLWNIKCTGNETYIWECSHNGWNVYYPDCNLHHWDVGVDCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ETL2</accession>
    <name>A0A7D9ETL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent DNA helicase PIF1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A079031</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008850">
        <property type="protein sequence ID" value="CAB4015804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ETL2"/>
    <dbReference type="OrthoDB" id="414945at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF6">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="423"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="328"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="328"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="340"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1005" mass="113227" checksum="0DAF9691BF1A1972" modified="2020-12-02" version="1">MYNFTLYRADIAKERRERANSRLCHIVICDSITKCRGSYQQRIVNRNGFERLTEGIRHVCHGSCAKRETNDFRRIQERVAKPQGKRKGTWWEGCQRGGEYHVNEAKVRLQSVGRRHRKDGVATDTINKSGINNKSNSSLLVNTGATSHIINDKSKFVDFDEEFNPSAHVIELADGMHAAIERGASISLDKQLKQLKCPDGTTFGMEQKGDIQKLENIVEGMNISNYDEVECKVCTKGKICQFRNRSPDERATAPLDFVHCDLASPIDPANLPKSIWTYAVMAAAYIRNCCFNTRLGSNHESKVDPDEQEGEFLPCKVSVPIANESAISTQGDESANGTESVHDEVRTQAVHSPERNKWEKAMDDEIEALEGNETFELVPPPKGREQAIQNNMLVHQMDVKTAYLNAPIDCEIFIEQPKGYERSVKDSLSNKFRMKDLGVLSWFLGTEFKCSEGAIEMSQKQYIEKLLLRFGMAECKPKVTPTVLGLDKVVDTKSPELKDPTLYRAIVGSLIDVMTVLRYLKGTIEQRFRKSESTLKLVGFRDSDWGGNVCDRYSVVGRGSFHFLEKSKTANCVALCTCEAEYMALTDAVQEAKFLKQLCVDLNIVQNIHNNTLPFGGILVILSGDFHQLKPIPDVLDSGDPVYKSIIFDKVFPHRIALTRIMRQGEGEMRLKDALDSIRLGKCDDETEVYLCGLSRSCTGTGDTPHIHIYFTKLPVAVHNSYMLINLPGQVLKFESTDTGHKILLKDTFAEILMLKPGCKVMLLFNINDDLKNGTFGTFINSSNSNSLQVEFPNVGIVTLQCKTWYKYDHAGHVQASRMQFPLRPSYAIMVHKAQNTTLDSVVVHCSQEFDSGQTYVALLRVRSEDNFQVIGFQKRYLLPPPPEIAQIATTRHGNPVETFKCCSNVELDRENYKLDCNNQYEDHSEFFDNDIATEEEIAKQCFEANQGNAVDLDGILHSMTDDASDTWLISPPSEFSIKTFLGSLKNDSNTDKMSELIKEQQIMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EX22</accession>
    <name>A0A7D9EX22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032744</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010335">
        <property type="protein sequence ID" value="CAB4019183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EX22"/>
    <dbReference type="OrthoDB" id="2213994at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="652" mass="74714" checksum="D2C169286389940A" modified="2020-12-02" version="1">MKASGSPCPLDQLSIICFKRCSFLRTYLTEVIRSVWSSKSVPAEWKKACSILIHKKGNTSDTSNFHPITLETIPLKVFTSCLRNAMFSFLTANNFIEHQIQKGFTPNLSGTLEHTAQMTNIINQARIKQRSVVITLLDPKNAFGEVHHNLIQSVLDYHHIPKDVSEIIKSLYTDFNAAFITSVFSTPFITVGRGVLQGDCLSPLIFNMCINTFIQHIKTDKYRQFGFITNLLNPVHWFQFADDAAVISGQDSENQNLLNRFSIWCQWSNMIVRVDKCSTFGIRKSLTKSIQYLPKLPINNELIPATKTGESFRYLGKYFDFSMSEKEHKQELITLMDDIMSEIDLKPLHPKNKLLLYSRYLLSKLSWHFTVTTISRTWVSENMDSVVNKCVRNWLEIPISGTLSNVYLTSNKFGLNIYPPSIKFAQCQRVARNALKTSPNHSVKDIWKTTSESKNIQYDVYTSTKEVLKTFNSGQEDKLQNHLILQGSFFSNVIKFSLSKLNGIWSKSQSNLPKNIYNFTIRYINNSLPTRKNLTKWGILSNSDCSFCLNPETILHVVAGCQTYLPRFTWRHDSVLNFIAQTLQPVNYSNVFVDLPGYKSPSIVTGDTFRPDLLLSINSDCLYILELSVGYESNLQTNVDRKRRRYEDLITQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EXB5</accession>
    <name>A0A7D9EXB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cation-independent mannose-6-phosphate receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A079887</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009655">
        <property type="protein sequence ID" value="CAB4017670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EXB5"/>
    <dbReference type="OrthoDB" id="5949540at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005537">
        <property type="term" value="F:D-mannose binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007041">
        <property type="term" value="P:lysosomal transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.130.10">
        <property type="entry name" value="Mannose-6-phosphate receptor binding domain"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000479">
        <property type="entry name" value="CIMR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009011">
        <property type="entry name" value="Man6P_isomerase_rcpt-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044865">
        <property type="entry name" value="MRH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15071:SF0">
        <property type="entry name" value="MANNOSE 6-PHOSPHATE RECEPTOR-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15071">
        <property type="entry name" value="MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00878">
        <property type="entry name" value="CIMR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM01404">
        <property type="entry name" value="CIMR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50911">
        <property type="entry name" value="Mannose 6-phosphate receptor domain"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51914">
        <property type="entry name" value="MRH"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4017670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="951" mass="106086" checksum="9D3B4379D2500D32" modified="2020-12-02" version="1">MAEDTRLHLDYYINVCSGYFPGNAKYQCQGSAGIGGCQVDSVQKKAHNMGYVMSGPVISSAGHLTLRYLGGETCHHRYDRSTRINFFCSHVHGSPVFMAETEDCEYVFNWKTPSACAVEKYSGEKCVVYDENYGFYYDLSSLTDIYSYDIEGNIEYKVRFCGKKPTICGKEVDSCLLKGKSATDLLNFDSMKYDDGKVVFTYNSTKFTVRNEISCDPKVETISGVGKTEISAGYNILWTSKLVCPPVTGEECSITHESDLYDLSVLAKEEWNWLARNNIKEFGFKGYQFHFSVCKPLKNISRFASDGSRGAMENKIEGTFTSLGTMIAPLKFSNGYLTMTYGHGDEIQGRCKNPTTTIQFVCDDVVPEGVGVAPVVDGFDKTTCEFHVTWLTRAACPVRSLLDWSNIPCTAIHPATKKTIDLRPLNNSKDGYYEVKDQDGNQYKINVCGSAKGCSKNSGICKIGKPNVNVGSVNTTLVYRQGFLFLHYKNGENCEGQQNRKTETLISFMCDPQAGNGKPALERTNDCTHFVTWKTKLACEAEVDCVAHDGQQFYDLTPLIKNDANYEVVHREKTYLINVCRSLVSGSRCPANATVCKDGESFGHVSSPPTIGSGETDVKAQLVYKNGRCGGSGNTTINFLCDPEDLANKQIIVFADKCSLTISWWTSLVCPKKVANNNCVFSDPEQKFFCFDLKKLGRRKSATFPGGDVHFHICSDHGKDCGEANGEACLTIGDKNTKALQRKGINYTGQEVRISYEDDIVLVLYCGEDGNSNTPQYIGKYKVDDKTTKYFFNMVTPEVCPPRKLPCEVKYNGKTFNLAGLSEKNFQVKGKDNDLYLVSICGHIQYTKETKICSSRATAVKISREKKEQSTIVIAVDRDYTLQYKKTDTDYPIHLQYSSSEAICDGKKAKVLHKFKCNHGTNPPQFDSFKDCVYTFLWQTAEACAEKRYCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCR4</accession>
    <name>A0A7D9HCR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A075636</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PROTOR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000280">
        <property type="protein sequence ID" value="CAB3980323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCR4"/>
    <dbReference type="OrthoDB" id="2290221at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031932">
        <property type="term" value="C:TORC2 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038203">
        <property type="term" value="P:TORC2 signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013745">
        <property type="entry name" value="Bit61/PRR5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32428">
        <property type="entry name" value="TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32428:SF2">
        <property type="entry name" value="TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08539">
        <property type="entry name" value="HbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="256"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="256"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="279"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3980323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="32004" checksum="3954D568FD10C158" modified="2020-12-02" version="1">MATRCTSASNLSDLIRRDSSVTVPGVGKSDRRTFGLAASTPCAADWQDVVNQVTTLFQTKKMTMKLHELTVKVKNVKSDVGNQINELYQESILKKGMIILREEVREKSGDYLEKLASCWTVFFCNILPTLQAVFASLPQANGLAVREISLVYFRDIVVLKTKLDEVIDGGREVPPRIVQMLLVLQSVHDSNAENYLKLERLVAKTVTPYLSTSVLCLTKAKTSNVDGDASEQYQPKVFMPGNERLDPVIEVDVGSQRSSVSSMSNESMAPATPLLKTPNIESGYSHSNPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HDQ9</accession>
    <name>A0A7D9HDQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000949</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000094">
        <property type="protein sequence ID" value="CAB3978168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HDQ9"/>
    <dbReference type="OrthoDB" id="10394311at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020067">
        <property type="entry name" value="Frizzled_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50038">
        <property type="entry name" value="FZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="28135" checksum="6225776635976A12" modified="2020-12-02" version="1">MFSVNLIIFLTLLVCGTSHANQAPGLGYLFVNGSQPAYCYDLSPNEVCPPNLVNYKIVGFNRATEVVAKFELQTVNLALDLLDFFHVSQSCRDSVRLYSCSNNFAVCTPDSKYGVNLRYNYLRTKVACESIKSNCSAIVFDGITFNCSLIQKDVSGYTYCDELPEVQGDVCSKSNYKYPAALGDFYKITAKAFPENLAQLVKDKLFTNVSCEQEFVDVYCQMMRGIVSAQLILHYVCTPSVNRIVLLLLQNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HGT6</accession>
    <name>A0A7D9HGT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037723</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000692">
        <property type="protein sequence ID" value="CAB3984065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HGT6"/>
    <dbReference type="OrthoDB" id="5990030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579">
        <property type="entry name" value="F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46579:SF1">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="895" mass="101477" checksum="87B9502F8CFFB95C" modified="2020-12-02" version="1">MPRGPYKRYEYDASVPVPKTTSYNRRKRNYDEVGEAENGSTLGDDSSRTSVCDTICHESQIEDEENIQTAGFQAEHMNEELDGSDERTNATGDDMNGIIEERNTSNEQAEYTNEGLDDSDAGGSAYGDDINTDTNGISEDRNTSNEQNSEDRNDPIYPGCNVTKGQSLLLILCFVLRHKLTDVALDDLLLLFNTLFPDTVPATKYRFYKAFQLDQSEKHFYCSTCTTYLGRNTGMKTCKACDSLFSEDQSIKNGYYFVYIPLLKQIETMLANGKLYSYLSNRNIEESLNSVVVTDVVTSELYKELITEHGLGPNDISLMWNTDGIPVFKSSNFSIWPLQASINELPPHLRHKNILLLGLWFGQKPNMNVFLVPFVEECSRLETDGFLFGNEIQPRKVFAFLLSADSPARAIVRNVKQFNGQFGCDWCEFEGVTVATNNNGPPVRYYPHRTPVVMRPSKKQAAYALQATAGNSIKGVKGVTVADLLPSFDTVRGTVADYMHSVCLGVMRQMVELWFESKHHGESYYIGQKVKLVDERLQLISPPSEIHRSPRSISQRHFWKASEWRAFIFYSLVVLHGILPAIFLRHYFLFVYGIYTLLGDSISSSSICLAELCLTKFVIKLEELYGLSSCKFNAHCLTHLAHCVKDCGPLWATSAFTFESHNHVLMNMFNGTQCVPQQITDTFLLQNKVLSLTTSWVDDDCSASVKELLGKLTNHARFVHNNASNGLATLGCGKLATLDARMLVALEDLLNETVDNRCGKMYDRFLYNHKLYSSLSYTRSKRHTNHHVSIQHPSSKYGRIVGLLNIKPLCRCTLEFSQYCQCKLYNVVFIKPMYASNRMLFRDLDFNVNSNFIVEVEESDDIIAMYPSQIERKCISLSLSDKTYFCPLPYRIYDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HHG1</accession>
    <name>A0A7D9HHG1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083827</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000534">
        <property type="protein sequence ID" value="CAB3982705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HHG1"/>
    <dbReference type="OrthoDB" id="10043504at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098">
        <property type="entry name" value="RAPSYN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098:SF106">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 28-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13176">
        <property type="entry name" value="TPR_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="416" mass="47731" checksum="1AD25CB027BEA075" modified="2020-12-02" version="1">MNNEREKKQLLEVYLNNGRSFKKTGQFKQAIEKFQEALKLAKELKDEKQLTNVNISLGHAYTLNNQIQTASQHFGKAVEIAKVRGYKQEETNAYLGLGDVYSLSNQIQKVVQHYEKALEIAIERGYKREEINAYLGLGDAYILSNQIQKAELDAYRLSNQIQKAVQHYEKVLEIAIERGSKQKETNAYLGLGDAYRLSNQIQKAIQHYEKALEIAIERGYKQEETNAYLRLGDAYRLSNQIQKAVQHYEKALEIAIERGSKQEETNAYLGLGDVYRLSNQIEKVVQHYEKALEIAIERGYKREEINAYLGLGDAYILSNQIQKTVQHYEKALEIAIERGSKEEETNAYLRLGDAHRLNNQIQKAVQHYEKALEIAIEQGYKQEETNACLGVGDAYRLSNQTQKAVQHNHEKALEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKY0</accession>
    <name>A0A7D9HKY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000228</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000816">
        <property type="protein sequence ID" value="CAB3985003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKY0"/>
    <dbReference type="OrthoDB" id="5988333at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="318"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="77"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="350"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="364" mass="41118" checksum="0618AF59B2A2F068" modified="2020-12-02" version="1">MAHESGHESEENFEQSLEDEVARASNDEPNAKAVATELGNVFADQFTALAEHLQQGFSSLERTMTQAMRTKRKRKSSSSSAGSGSSNHSDQEAIAIKEPKQAKKSTTDDLTEQVEDLLNTHEGNKSDTSNAINTTHDEVLNEIAQELDCDELCSPPLLDKLATVVNKMLRTKLSEDKLKEKQRLYTRPQNCDTLVTTRVNAEIWAKLQSHTRSVDIRLQKVQALLLKGIVPILQIANTQLSSDGGENENHKEMTRQALDAISLLSQANQELNQRRRELIKPDLNEKYQQICAEHVPCTDHLFGDELHKTLQDITATNRVSQQVSGPPPFKKNSFNRPKNERGRWQYPPRHFQRKRGGGRKRQTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMF8</accession>
    <name>A0A7D9HMF8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087224</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000834">
        <property type="protein sequence ID" value="CAB3985148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HMF8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="261"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="295"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="385" mass="43085" checksum="2244100AEC42F4D6" modified="2020-12-02" version="1">MENNMGEIIEIVNEATQPIPEQNLLTTASSSSEDEEKAPHTPNYERSPSCGKNIEQLKAIYNEKETTTTVKPKQCKPIPPPRKRKRPTTNTEGPGPGRPTKDLALLRDAKSGENDDGADDALSIQVALFSGNGQFRKKAKLLTKHDKDIKCFAIKHYAPLEYIAEEKFGDFYIRIQFGDFVLLTPISMEDTSPAGSIPTTIRELFQLAKETGLPVGIPIGKKGELTLREKAILGDLKLLLGYRHARYRSNRTLGAYWRLDRNPAAPIPPQEPPPRRPPQVMINLDSDEDEQPPAENEPPARPRPPPTNLNHALLQEKGFESFKGKKRLRMEGRLSQALGDAKAMQKIVGGPLWEQLSQIEFYSAILRNNLFGRLIKVSWKDIAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HW65</accession>
    <name>A0A7D9HW65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PREDICTED: uncharacterized protein LOC107346752</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A086026</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001850">
        <property type="protein sequence ID" value="CAB3991436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HW65"/>
    <dbReference type="OrthoDB" id="5953963at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2410.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00632">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="HECT" evidence="2">
        <location>
            <begin position="25"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3991436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14620" checksum="23565E2BAF123998" modified="2020-12-02" version="1">MKWLPQDMFWQKECWTYLRMKINKDACEENKTTAEFFVSYIKEVELRKVGCARLVDLVSFWTAGSTIGYNDELLMVKFNADCKLPMAETCFMGIVLPTRHTSYDDFRKHMDIALRYGSKGFDFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I1N1</accession>
    <name>A0A7D9I1N1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070177</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002570">
        <property type="protein sequence ID" value="CAB3994945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I1N1"/>
    <dbReference type="OrthoDB" id="10058156at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11487" checksum="9064028FB52DB536" modified="2020-12-02" version="1">MNLKENSQPKFCKARQVPYALRPKVEVELTKLQNDGILTKVDWSERATPVVPVIKKNGNVRLCGDFKQTINPVLHVQQYPLPRIDAIFASLGGGQKFSKIDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I238</accession>
    <name>A0A7D9I238_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc metallo ase nas-39</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024627</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002887">
        <property type="protein sequence ID" value="CAB3996526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I238"/>
    <dbReference type="OrthoDB" id="5982522at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="40751" checksum="845AD3259D0C495B" modified="2020-12-02" version="1" fragment="single">MELHEMDNATLDNHLRLFYAEVKNQDGDDYSKSTLLGLRYGLERYLNSPPHNKGITISGNPEFKKSNVVLNAKLKSLKQGGKENVQHKPPLEPEDLQKLKISGVFDCSSPLGLLRNVWFSTVLFWCRRGREGQRNLTRESFVFAQDPTGEEYATMTHSEASRNHPGGIKDSESFQHIGRMYQTNEENDGYSALKLYISKLNPACEELFQYPKRNWKPDGKTWYENRPLGINKLGDMMKDIMTAAGLSKIYTNHCVRATSITLWSNAGLTKRHIMSILGHRNEQSLQHYNRRPSTSQLKRCSEVLSEALDGGHTLPPLSNSAASIDALYGSSNSYGLHTQRCLIQEFFKFHYRLFGTRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I564</accession>
    <name>A0A7D9I564_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003412">
        <property type="protein sequence ID" value="CAB3998688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I564"/>
    <dbReference type="OrthoDB" id="5920525at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="28461" checksum="2E3683ABB9DA4938" modified="2020-12-02" version="1">MSSNLLLADIQKAFLQIAVKEEDRDAFRFLFERDEKEEHFRFARVPFGVEASPFLLGATLEYHYDQQSPELEETVTALRENTYVDNIMQTGNNIDKLEKFKKESEVILESAKLPIHKWESNIATLEDENMSNPSKILGHVWDKREDTLEIQVPAIPETEPVTKRSISSQLGKVYDPLGIISPTMAEGKHIYREACEEKKGWNAEVSPELKIQWHKWNKQLKNVKVPRSLTGNSSSMCLPPQAISHVLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I604</accession>
    <name>A0A7D9I604_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079161</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004358">
        <property type="protein sequence ID" value="CAB4002446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I604"/>
    <dbReference type="OrthoDB" id="6038967at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00186">
        <property type="entry name" value="FBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="613" mass="69408" checksum="BFC2F12B0FD14467" modified="2020-12-02" version="1">MLLVLFAIYIVLFTLTSSELKTVSLQGQFPEKCNETNHGKLVVVKDRQNNDKLLLCAEENKVFVWKTTDGSNPTGEFFNPAYDCSDVLNKNGKAKDGFYWITLSGTVPKRIWCDMITDGGGWMLIGRTNSSITWTVPSNNTPVEPFGEPHWSSSLGDAPVVDFRVQVATQEDFSATKAHWSFRLQNKRPLKNLFIVNEGGCGRLSPGIGHISYVKDLQTEEIVTTKFRCSNFGTYYLKNSKLGWDMMNLCFQQPCLLGFAFLQKYGIQIDFSGSFSYSAFANTSGISHESTSFVGCVNRKCCGCFGPVGGKKHYCGTECKAKYGGNIVKNVYTWFWVRSSLPKRLWNKCIEYKVNVVQGKAVWYKLYNDNAVPVTGRCNQNEPLVNDGIVVVPNIVADQKVAPAIGLMKYRKDNEKLYVRSNETWKVICEEEKHDKDFAELKETLVQLQSQLLIMNKTVSDMKREDERKSCVSLYFHGERKDGIYTIDPDGIGAFQVWCDMTNDRGGWTVFQRRQNGNVDFYRGWHDYRNGFGDLNGNFWLGLEKIHRLTKSGQNVLRVDLMDFDSTTAYAKYGTFHVASMSDSYTLAVGRYSGKHDLIIYDGRGGPLLTSDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7G9</accession>
    <name>A0A7D9I7G9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arylacetamide deacetylase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A066833</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003346">
        <property type="protein sequence ID" value="CAB3998408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7G9"/>
    <dbReference type="OrthoDB" id="5967440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050300">
        <property type="entry name" value="GDXG_lipolytic_enzyme"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48081">
        <property type="entry name" value="AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48081:SF8">
        <property type="entry name" value="ALPHA_BETA HYDROLASE FOLD-3 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha/beta hydrolase fold-3" evidence="2">
        <location>
            <begin position="115"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="Alpha/beta hydrolase fold-3" evidence="2">
        <location>
            <begin position="311"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="44076" checksum="90CDF49A536D02F0" modified="2020-12-02" version="1">MFRKAVTILVACFAIATGIVWYGVYLPLSAKIEDPGSKVLPFVLRFVELLSHSGNKLGIGTRIGIARTTFAWLDWIDHGQGEWKKGINITDSTIAGVPVTIFCPDVTTTSTPPGLIHFHGGGFAIGSRKYKSYMITCIMLANGTKSVVIAVDYRLAPENTFPAPFKDAFDVVSAVITEPTKFGVDGNRIAVIGDSSGGLLSAAVSLEFAKLARPRKIAAQVLIYPWLQTIDTVCLPSYKAYREGFPLSDKSMAFYASAATVGSQDMVPEYLAGNVSRYFMQTPYWKYVAELSTCKIPTEKSKVNLPSNFVEKVTDPRLSPLLAEDLSGSPPTFVAIAEYDVLANEGTLFAKRIKEAGVPVVEKQYKTYHGFVQNVGLPIGNDTFAKMAVNDIVNFLNSVYYNNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IB66</accession>
    <name>A0A7D9IB66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily domain-containing 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A074452</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005410">
        <property type="protein sequence ID" value="CAB4006102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IB66"/>
    <dbReference type="OrthoDB" id="5983452at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051068">
        <property type="entry name" value="MFS_Domain-Containing_Protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510">
        <property type="entry name" value="INNER MEMBRANE TRANSPORT PROTEIN YAJR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510:SF16">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY (MFS) PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="179"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="363"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="398"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="426"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="459"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="492"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="521"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="220"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="244"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="300"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4006102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="544" mass="60749" checksum="98297876044B77D3" modified="2020-12-02" version="1">MKTFSFEQKLRMTFFAFSLRMVLMGVEFAVIFPSVWLYLKIFNADYWYLGLVLSAYNMIGIISTLLVGHLADSTGQIRFMGFLWNIAEIAGNLIYALHFHVAFPLIGRMISGFGEGYISAMWGEIARITTEEQRTRYFAILKGANLLGTAIGPALNLFLKEFDFYIGHWHIDFRTSSGFFMGIVWIAVTIVMLGMVFDLSAELQKAGKLKQFQKTGRLDIDEKGGSIEDSGVKNPGGEDEEVKNEDGGIKGSEDGGVKEPERSEEGQAVGEETKDWEDTTDDGTSEKQGGNVEAKQSQGGDERTETEEQKGETEMTKDLTEHKDTKSETEVVVKSVEEDEPEEPRGTFKTAMLDMFTKFEVNVLVYLFFFMYVTHTCLQGITPLFAELMLKWDETKISIVYTAWGIEIMFVLIIIWIVAPYVADRVILIWAVFGGTLASVSLVVLTYSEPESMLCYYSFLTTIFLGGIGIAITVVVGRSLISKHTSPENQCLVHAILTSLNRMAGLTGPIFGSSLYTNKIVMGYLIGGMQFIGLVLLLIVYKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IFP7</accession>
    <name>A0A7D9IFP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043813</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005539">
        <property type="protein sequence ID" value="CAB4006556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IFP7"/>
    <dbReference type="OrthoDB" id="5957366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13667" checksum="F8B68166DEE4C9E4" modified="2020-12-02" version="1">MLLAYIMIPVVEKEVNDFKDVVWNTHRIRAQKDTYLPNGVPNHMCSFPEKYGLQECGIPVTDDQLEEVAVESGVLDVPDDYLTTEFREECERIVDLKHLQPSDCKEAFLFLKQHFRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJN6</accession>
    <name>A0A7D9IJN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019889</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007031">
        <property type="protein sequence ID" value="CAB4011113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJN6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="54" mass="5935" checksum="E12AEF79DFF9F303" modified="2020-12-02" version="1">MASGPTQGLIYEVLLLLSGITQRNQINLDDVVGLWCRDSLMSLALVHTSFMAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQY0</accession>
    <name>A0A7D9IQY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048885</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007083">
        <property type="protein sequence ID" value="CAB4011244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQY0"/>
    <dbReference type="OrthoDB" id="5988279at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010281">
        <property type="entry name" value="DUF885"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33361:SF2">
        <property type="entry name" value="DUF885 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33361">
        <property type="entry name" value="GLR0591 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="234" mass="27001" checksum="7F7C1DC0174ED1BE" modified="2020-12-02" version="1">MAMNGKHSHRESEVAEMMNKDKGGQYSVMGSKQARATCSLTIIVLFIVSMILVVVGISLIIVSSSKKDDCQGTGDLEHKYCGFSEEAKRAGFEQFLTEMQRTFFRLHPHQSYHDPKMDFEEDVVVIQKTYKPFNPKPSNLKTITDASLALLKKLNALNVNVDRLKPRERKTLIQAKHYLKHVFGQTYDMNYYAADWLMGPNHFCWQPICDIGKDIFYHLDYFKPNGLKDLERLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ITV8</accession>
    <name>A0A7D9ITV8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Pentraxin (PTX) domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A006027</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007760">
        <property type="protein sequence ID" value="CAB4013113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ITV8"/>
    <dbReference type="OrthoDB" id="5949213at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051360">
        <property type="entry name" value="Neuronal_Pentraxin_Related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030476">
        <property type="entry name" value="Pentaxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001759">
        <property type="entry name" value="PTX_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277:SF125">
        <property type="entry name" value="B6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277">
        <property type="entry name" value="PENTRAXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00354">
        <property type="entry name" value="Pentaxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00895">
        <property type="entry name" value="PENTAXIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00159">
        <property type="entry name" value="PTX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00289">
        <property type="entry name" value="PTX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51828">
        <property type="entry name" value="PTX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pentraxin (PTX)" evidence="7">
        <location>
            <begin position="1"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4013113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13045" checksum="73546B69002DBB4C" modified="2020-12-02" version="1" fragment="single">TGVSLSDGKFHHLCVTWQSSNGNFNVYVNGTVAFSTTAMNGKVLPGGGSWVIGQDQDSVGGGFDANQAFGGEISEVHVWNRALSPAEIEVLASSCAQDLVGNYVAYTDFKIRGNVPTFQHCCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUI0</accession>
    <name>A0A7D9IUI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009098">
        <property type="protein sequence ID" value="CAB4016388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUI0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="284"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="285"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="37029" checksum="11BBE1D8DC4C541E" modified="2020-12-02" version="1">MSTATHQTQSSNINRYPELKLSWSGDYESLKLFVDSELNFEGTWSSIGGEKKLFKSKNVDIHWWAKKKFLRIEGKQASEVKRSILMLILHDIGSDDHNIRSSHNMCKCPEVSSDIEGVKLDVIILESTVKQQANTLVSLQDVITPTCLYFSDEPEQNNTDNIIEKQNNTDSIVETLVGKYLPSHSKSNVKNCSYNTPILKNPCHDLHHNPQGIQDQLNTSQRIEKECVEICQSNTNKRYFHYHGQHNECSPHCLDLTVINPSNSGIITDDTTPMNNYQSIPTRITQRKPSRKHNKRNKNSGKDFRARTMLRDKMNFYKYYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUT0</accession>
    <name>A0A7D9IUT0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">N-terminal kinase-like protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">SCY1-like protein 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A059248</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Regulates COPI-mediated retrograde protein traffic at the interface between the Golgi apparatus and the endoplasmic reticulum. Involved in the maintenance of the Golgi apparatus morphology.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009300">
        <property type="protein sequence ID" value="CAB4016890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUT0"/>
    <dbReference type="OrthoDB" id="447103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051177">
        <property type="entry name" value="CIK-Related_Protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12984:SF3">
        <property type="entry name" value="N-TERMINAL KINASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12984">
        <property type="entry name" value="SCY1-RELATED S/T PROTEIN KINASE-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="420"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="459"/>
            <end position="667"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="679"/>
            <end position="750"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="763"/>
            <end position="832"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="425"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="473"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="483"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="513"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="534"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="564"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="588"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="642"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="693"/>
            <end position="708"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="714"/>
            <end position="724"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="726"/>
            <end position="736"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="775"/>
            <end position="786"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="798"/>
            <end position="808"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="832"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00038349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00040972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00042347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00056114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4016890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="832" mass="91830" checksum="EB45E7738E086DAB" modified="2020-12-02" version="1" fragment="single">TALDFLINNGGLVHGNICLSSIFVDRGGEWKLGGVAYIQPATPASGADLHTLSRFPWMQKYEPPEGVYGGKLKKRTEKWSADVWGLGCLIWEIFNGLLPKSSSLKSVGKIPSNLLSHYGELVSANPKSRPDPAKFITQCRAKGQYLANSFVDSNLFLAEIQIKNQAEQKEFFKSLSSQLDSFPQQYCKLKILPLLLNAFEYGSAGSTVLAPLFKIGKLLEAEEYQQRIVPCVVKLFSSTDRATRIQLLQQLDNFVQYLQPAVVNDQIFPNVAMGFGDTVPAMREHTIKSMLLLTPKLSEKTINNQLLKFFAKLQMDEQPSIRTNTTVCLGKIARHLPEATRQKVIVAAFLRALRDPFPPARMAGINALCGTLEFTAAQECATRVLPALCTMTVDPDKSVRDHCFKAVRLILSKVEKHSEEIAAKENTSNESPSSTEEPGTTSGTWTGWAMSSISSKFYKGGSASGDVPEKETTSAPQPQHVKSTSNSDRNTRNTTTAVANHARDKESQLDANSDSDYEGDEWGEEGWQEDDEWGNEKDSLSSVKKDLVAARNELTSVISHDEPGETDSVNEDEDSDSDFGDWDQDNWGNSNKLTTQTKNVKSPATSSQSKARNEKSTTGALKLSSSKKKSGVNEDDLLSELMSDTIQNKPVSQGSAWDTDWNDMKDSFVQDDNWTQSFFQQETKTNIEKSTKKFGSSPKTSKKSTNQTEDTKKSKTAAKTRPKQGRPTTNKTSHSSDGWGEDDWAPLEDSAQVATSFSSVSLADMGNAGTAGDSWDTEGWDNFDSIEDSKQSNADIARKKREERKKQRQQALKEKRAAKGGSKLGAVKKDQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IYS6</accession>
    <name>A0A7D9IYS6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062834</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010818">
        <property type="protein sequence ID" value="CAB4020171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IYS6"/>
    <dbReference type="OrthoDB" id="5980064at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="407"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="513"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4020171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="513" mass="58711" checksum="C2B31AD982FF44A3" modified="2020-12-02" version="1" fragment="single">WEVCEVQTPGHYKRGTRTGVVQTVPSCLDEMHHRSQLHTHTTAFRRLSNWKFKTIQQPRPPLQNQLWNVLRFGAVSRKSRLELVSGHMAVNLISNVKAALEGFNGQYPIYLPDSHEFTAKIMEKRVPERVCSVSIARVKLPPEACFDVYLAVNTKFSQYRALHWKGNPSTKPVPLRGLRERHNQQHGSKSSAKNCLQLSKTLVFFSYRDKFNYRYNPQQIVKINNISTDPLTISCGKFSSNTLITIKAQDTVIFFRLCSFLCTKTPIRIHLTLIIEDMSEGVVEVMFGESLTFQRTGRLNRKETFKGVRDAVPKDLEVDDTQIFSDFQLLTKDDINLLVQKSAKKSCSLDPMPTSLVVKCLDKLLPTIMCLVNLSSSGKFADDWKKVLVNPFLKKDNLNLEFCNLCPISNLQFISKLTERAVFDQMYNHMMRFDLYPTLQSAYRQGHSTETALLRLHDDILLNMDKKHVTLVVFLDLSAAFDTVDHKILISRLRSSFGLKNMPGHGFHRLGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J4M8</accession>
    <name>A0A7D9J4M8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075386</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011709">
        <property type="protein sequence ID" value="CAB4021924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J4M8"/>
    <dbReference type="OrthoDB" id="10064735at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="493" mass="55627" checksum="3ACFB9F08CD60CD9" modified="2020-12-02" version="1" fragment="single">MADETSTQASSSLPQGLEARIVTSEDKVAKKKRYYAERDASKIYLFDQHVRWRELMNELALKSDKELAAVLLDNYMSRKNQHFSEVETQTEGELGELPNIEEPQQVFTTTPRHIHSPAATSTRSLERAAHGFSTPKRRRLSIDNVPLPSPAMSRISNVSSILERTMTASESEDSDDSEDMEELNPLNSSLLQVDDLEKTSLESEVYDLDVEGQDDIGEDISEQVSSSTNNEDTEVEIIQPADIAKNEYCIVAATKLIRLLYRVHGEICKRPGCDELLEFQETYRGTCLVVTWKCHAGHFGGRWASQSTCAGLRAGNLLLAAAIALSGNSYTKIGFLFKVMNMTYISKMLYNQYQSLYIAPTVEEYWKEMKDEAWKEREGKEIILSSDGRNDSPGHCAQYLTYSFADMESKTILNLNIVEVREVEGRKSTNMERVGFERGLDELLTSTMKIEELVTDGHLGISAMMKNSVKYKDIVHQWDVWHGGKNLGKKVIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGX6</accession>
    <name>A0A7D9JGX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055861</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015707">
        <property type="protein sequence ID" value="CAB4028768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGX6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="239"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="248"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30467" checksum="C5E72BE9D71B91B5" modified="2020-12-02" version="1" fragment="single">MEDYDDIELEETEKSYPQYDDLNYDDLTTAFSRLDTKVKGEAMYGDDPIVLTDLKSELDYVKNLMERREIEETTFTEGSDGTVNISGPSGSTTTPGVDFVEDPNNVLPDVLDAFNESFDADWDEIEARLEKLNKISTENKKRDFENQVERVQAVARVIKGKEGLILDPKNKYVRELIKRSSVRTLKDGTEVLVFRSEQGIDKSGTQIMKRGKTSKPVYSKNSTALREYKDLIKKIKEVPTNPDNIIGSDEDTREEPQFDDSDEEYAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JK03</accession>
    <name>A0A7D9JK03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062016</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017351">
        <property type="protein sequence ID" value="CAB4031086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JK03"/>
    <dbReference type="OrthoDB" id="5970613at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="26887" checksum="62B120AF2FCD8F3B" modified="2020-12-02" version="1">MDNMDKFNDNQWLTDTETPASNPKDEEKPTTVTKNVSDSGDKPMIAYLHNLSPIKKSQRDNLYFDMTLQTEDTTYRSVCFSPEKHTQFLTRYESSSPVKLSKFQLKRNTRTNEDEVHINKRSKVDDTEESDVSFDIKVLRPTEKCKPGITTVCDVLQEDTNSVVNVCGRITLQGPIQTIMSKGKALRKQEAVLTDNSATIRLVLWENDISKVSSESTYDISKVVLKEYEKAKYLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0T7</accession>
    <name>A0A7D9K0T7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024720">
        <property type="protein sequence ID" value="CAB4038892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0T7"/>
    <dbReference type="OrthoDB" id="5990438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001995">
        <property type="entry name" value="Peptidase_A2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50175">
        <property type="entry name" value="ASP_PROT_RETROV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="25230" checksum="2B9F6B7007814AE2" modified="2020-12-02" version="1">MAKNIEQTSPQCAFCKKLQVHVTILCCKQCKAVYYCDRECQRKHWHDHKATCVALQSINHKDMKDNADLEFFATHLTPSQQNKLVQIIGRKYIVLGKLDNKEVNVLWDTGAQVSMVSKRFLRQSHPIKQIRSLSELVETDLKLTAANGSVIPYIGWVELAFILSSKNNQVRVPCLVTTETIEYPIIGYNVIEEIVTNEHNDLLSETQSSFVGLDNGAAQALIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0U9</accession>
    <name>A0A7D9K0U9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Hemocytin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A066803</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024953">
        <property type="protein sequence ID" value="CAB4039102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0U9"/>
    <dbReference type="OrthoDB" id="6236007at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000012">
        <property type="entry name" value="Delta-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050780">
        <property type="entry name" value="Mucin_vWF_Thrombospondin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014853">
        <property type="entry name" value="VWF/SSPO/ZAN-like_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001846">
        <property type="entry name" value="VWF_type-D"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11339">
        <property type="entry name" value="EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11339:SF395">
        <property type="entry name" value="GH18 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08742">
        <property type="entry name" value="C8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00094">
        <property type="entry name" value="VWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00832">
        <property type="entry name" value="C8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00216">
        <property type="entry name" value="VWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51233">
        <property type="entry name" value="VWFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="268"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4039102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="280" mass="29965" checksum="4775648081DB6E9A" modified="2020-12-02" version="1" fragment="single">MGRCEYVLAKDSVNNKFEIRQVNEACENGKFSCTKSLTVIFPTVTIQLLRGSVVVGGAEVDLPVSYGGVDITRSGVRVTLVDSDYGVKVEWNNVHNVRVTVYGRYIDKTSGLCGTFNRNPEDDFLTAYGATVGNAVDFGNSWKTDSCCDNATDVPHPCETYPGKNATATANCSALLSPPFNVCARQVDPVLQGYVDDCEYDVCGCGDDPTVCLCQAIEAYVAACASYGVSIDWLSDDRYQQCNSSCASAPCCNGGTCSNNGLSFLCSCPPGYAGDRCETE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K287</accession>
    <name>A0A7D9K287_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">THAP domain-containing 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A027522</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025831">
        <property type="protein sequence ID" value="CAB4039764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K287"/>
    <dbReference type="OrthoDB" id="5989541at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.210.20">
        <property type="entry name" value="THAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026516">
        <property type="entry name" value="THAP1/10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038441">
        <property type="entry name" value="THAP_Znf_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600">
        <property type="entry name" value="THAP DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600:SF11">
        <property type="entry name" value="THAP DOMAIN-CONTAINING PROTEIN 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00692">
        <property type="entry name" value="DM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4039764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="22957" checksum="631922FAB87CEA8F" modified="2020-12-02" version="1">MTEKGGKYCVTGFANARSCKNSSYSKGISMHMFPRDDKQRAAWTKFVRKHRPGWNPTTSSAICSAHFQGNDFTQRLNIDIPTAPDRSSSNISCKRYLTHGTIPTIEDYDIASKSFPQTATLEPTTPQIPAAKVQRAKRQLLRDVCQSTKGPKILDESVAMAENQVEGSCGDERRSTVFLSQDQSFPHGEQVINVLKSQTNGLLVNES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K5B4</accession>
    <name>A0A7D9K5B4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027647">
        <property type="protein sequence ID" value="CAB4041021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K5B4"/>
    <dbReference type="OrthoDB" id="10055717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="96" mass="11130" checksum="5B4954201E3D4BE0" modified="2020-12-02" version="1" fragment="single">MGEALTKLVDKHPNRWSQHLPDVQLAYNTAVHTSTGVSPYKLVFKEHPRSKFEIITEKISPATVREKTERLRETVSEVFQKAQESDAKLAEKRRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K7R8</accession>
    <name>A0A7D9K7R8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger CCHC domain-containing 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029548</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029430">
        <property type="protein sequence ID" value="CAB4042080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K7R8"/>
    <dbReference type="OrthoDB" id="10064617at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002218">
        <property type="term" value="P:activation of innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042509">
        <property type="entry name" value="ZCCHC3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22639">
        <property type="entry name" value="GAG-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22639:SF3">
        <property type="entry name" value="ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="186"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="209"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="235"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="35626" checksum="AC9BDC4BFE2DEC0B" modified="2020-12-02" version="1">MQRPRSLRLTLEGLPAEATVDGPVILRKEIYYSLKEGNIVVKTNDGIECFSKVLWFIVFEIQRQREAAKDKTLKLHNIEFHLESTKIERPTYMWSLKGNIPSFIFVGKYRIRRAYQGQRRTCRNCQQEGHETKDCQAGRVCKECGKPGHIKGTCPEKQCFRCQEKGHEANDCPQYFVEFQGLWASTGGPGARAETHSNGDTETQSKNPTTDLTTTATTSLGNEAEEDPQLGAATKEQSTRTGNLTTSCTNAGTPNQGETRNQNPMDIPTAKPKRIHSPIPRQHTPIHNRDSTIPQTSNKPPYPKPSPSEQHRNRVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8N9</accession>
    <name>A0A7D9K8N9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A080440</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028079">
        <property type="protein sequence ID" value="CAB4041287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8N9"/>
    <dbReference type="OrthoDB" id="8059033at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36191:SF11">
        <property type="entry name" value="BRCT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36191">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="3">
        <location>
            <begin position="322"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="164"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="262"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="18"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="166"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4041287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="506" mass="56240" checksum="A0D3C0FDC61A00AB" modified="2020-12-02" version="1">MSAVNSTLLEHSNRLEQFKNQESDSEAIRLRNENLELKKENGRLTEQINNLSCTLTDLQDKVKQAEEEKASLITAIWLLNKELGVNQPLNSSESTGEKINSDEADDCQRCQQLSRAYPDIPTQNRYSTLAISGPQVIEETVEAIQRQASGQGLQAIEVEEPVEAIQSQASGQGQTSTSTQDVDKSSDKPKSVLIIGDSIIKHIDPRKLSKKTVYKRSFPGKRVEEIHDEIDNIQMNDELSYVIIHAIGKTSEAANGVFKPNTSAGTTTNPANNPTNDNSTIQETSPLDVGNDNSGKACRGPTMGEFDSSLHCVARLKGLKIASINVNSLLKHIEEIRHLLFKFPFDIFAINESKIDDFVMDGEISIPGFNLIRKDRNRAGGGVVLYIRDNLSYLDRNDLVPDRLEMLCAEITRPFSKSLFVCTWYRPENKELIIIGDINCDVMKTSPDAHTRQLNFLCSLYQLDQLINKPTRETNTSATLIDLVLTNAKENISTSGVINMGCLTIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K9Z8</accession>
    <name>A0A7D9K9Z8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051069</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029406">
        <property type="protein sequence ID" value="CAB4042067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K9Z8"/>
    <dbReference type="OrthoDB" id="6155538at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13228" checksum="6DDB169E11DE6A74" modified="2020-12-02" version="1" fragment="single">MAEYDARKKEQMKSCADNRRGAKESCIKPGDTVLLKQPKENKFSAPYNPQPFVVEKKKGTMVTAKNDSKVVTRNSSQFKVISTRSAKHNDKEVEPKVPRPSNPQEQKTVQQRPKRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KI49</accession>
    <name>A0A7D9KI49_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044076</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034865">
        <property type="protein sequence ID" value="CAB4044415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KI49"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="70" mass="8035" checksum="BD68819EFB3CB624" modified="2020-12-02" version="1">MENSRTIPNNMENSSNIKISKNMENSRTIPNNMENSSNIKISKNMENSRTISNNMENSSNIKIHQKHGEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L0D8</accession>
    <name>A0A7D9L0D8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A031456</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012393">
        <property type="protein sequence ID" value="CAB4023248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L0D8"/>
    <dbReference type="OrthoDB" id="5976912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5044017280" evidence="2">
        <location>
            <begin position="28"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="376"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="136"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="215"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="331"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="402" mass="45422" checksum="690927B9195016E7" modified="2020-12-02" version="1">MTMSKISESFVIICLLGLTSVTYVTLGNSECKSPLGMADGRIKDSQITVSSFNREAYGWQARLHQNIEIWRAWCPDVCGGKKTEKNYDQYIQIDLLNVTKITGIATQGREYNGGREKAKDYKLSYRKDGGVWHFYQEKDQDAKEPDYSPADDETEPYEEVQISPSSVYAEPDRNRQDEATNDGAYQKLSKRDSDYDYVIPADGLPSSVYAKPDRNQQNYETTNDGAHQKLLKRDSDYVIPADGSPSSVYAELDRNRQDETTNDGAYQKLLKRDSDYDYVIPADGPPSSVYAKPDRNQQNETTNDGTCQKLLNRDSDYVIPADGSPSSVYAELDRNRQDEATNDGDYQKLLKRDSDYVIPAHAEAESSYEEVGKIKTSPGYTELGNTKRVQDDSADYQKLIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L271</accession>
    <name>A0A7D9L271_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007939</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012959">
        <property type="protein sequence ID" value="CAB4024314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L271"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="40518" checksum="9F69CA72FA529A69" modified="2020-12-02" version="1" fragment="single">MVCIELSLPYNKSLLISTWYRPPNSLMNIFDYWASFLAKCDNEDKELILIGDLNCDVSKTIPDPHTGKLQFLCSLYQIDQLIKESTRLTPKSATLIDLILTNRPENISRSGVIHPGISDHSLVYAVRKFTLPNGRQKIRQVRNFKNFVENDFIRDVSQLPWEMVYQFGDPNLCWQVWKSLLLDALNRHAPLRHKRIRNNPVPWINPQIKELMRKRDYHKKKTIKYDSESQWELYKTLRNEASSQMGDSKSGWAWINSLLGRKHKNANINELKVNDDIISDDKSITETLNEYFINIGMKMAAESACQNTDALNDQVIYESTVLLPKENFHFADITIDSVSKRLQKLNVST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LI59</accession>
    <name>A0A7D9LI59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046804</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018640">
        <property type="protein sequence ID" value="CAB4032727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LI59"/>
    <dbReference type="OrthoDB" id="5977454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="34916" checksum="FCF958CA2A14195D" modified="2020-12-02" version="1">MTAMKLYYSCGFVPICIHCGKYVPNKSVQNSPNKAKKSDNVTPKAMKETKVESIDEVSKIGKLYKMMQTVLVKLETLDLINERILSVEQNVKSLTESIEFAHGEISDLKEEMVKREETEGENYSQIKELEDWNRRLQDSVVDLKARSMRDNLLFHNIDEAEEEDCTEVIYSLLEEKLDMPEARSSIKIDRAHRVGRKRDGRRKLRAIVAKFYFFPDREKIRFNAKKLRGTKIGISEQFPEETEKVCQTLYPEMRRAKATQSRECVWFVINFILTMWSLFPIITKGNITQLYLVRILLSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LRX8</accession>
    <name>A0A7D9LRX8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021647">
        <property type="protein sequence ID" value="CAB4036051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LRX8"/>
    <dbReference type="OrthoDB" id="412155at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="17138" checksum="60B174DB84E2D752" modified="2020-12-02" version="1">MDEVASYEVKNLCGLMDAIFSEAVSDEIAKIRKEKCCDCKVDYPSQRRHECLMLTLEESWRTYGLDAIEQVIERGILWKLFNEAIRVQKLDYYEVVREHYENLTKNYETTLEFLKDLRYNSEFFDYQVILGYLYYWSENQYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LW22</accession>
    <name>A0A7D9LW22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036845</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023242">
        <property type="protein sequence ID" value="CAB4037574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LW22"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="9382" checksum="030C9CCA9BB5D748" modified="2020-12-02" version="1" fragment="single">DVWREVLSHYTLSDPRTPELDSQVFSCVSDAFHCVIGNQNVSTDDNTSLRDVISRVDHVQIFVTGSLYLVGMVLKLLEADSVNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZ25</accession>
    <name>A0A7D9LZ25_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079216</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027718">
        <property type="protein sequence ID" value="CAB4041066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZ25"/>
    <dbReference type="OrthoDB" id="5920040at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21590" checksum="BD356051549FF4C1" modified="2020-12-02" version="1" fragment="single">MLYSLDVLGVEDRGEDDQLDVYTEFNETIVRDKEGRYQVNVPWIPGAQLTETNEIQSKKRLRSVTKKLNQDLSLKTEYRNIVAQQLEKGIIERVPGEPTGSRVFYMPHKPVVKSSATTTKVRMVFDASAKPNPLARSVNECMYKGPPLQPLLWDILIRARMAPNLLIGDIQQAFLQVGLKPEDRDAFRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MEM6</accession>
    <name>A0A7D9MEM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085309</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020040130">
        <property type="protein sequence ID" value="CAB4045536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MEM6"/>
    <dbReference type="OrthoDB" id="5954773at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="22740" checksum="D36BD540510DC8F0" modified="2020-12-02" version="1" fragment="single">MWKFVDDVSSSENLTSNSFSVTQSTLDSIDSWATYNCMKLNAKKCKELRVSFLKETPQLPSLTIVRHVVETVQSHKVLGLIIQNNLKWDEQIRSIITKASKRLYGLRVLCRGGVPPADLTNIYFALIRSILEYCCEVWNYAIPRYLSDELERVQKRAMRIIFPCHSYDEALQLANCTRLSDKRNETCINTSQKIAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FKV7</accession>
    <name>A0A6S7FKV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000289">
        <property type="protein sequence ID" value="CAB3980424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FKV7"/>
    <dbReference type="OrthoDB" id="2499658at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="36741" checksum="2A844E90259D362A" modified="2020-12-02" version="1">MEKFIEMQKTWSMIQYEKELERLHKRADVFLCYYWMGDNVYFEKPLIQRQFDAILDVIEKRYSAEINTVITEKTLDLNNLSGYNNQYRYLLVCIDVGTRYAFVKPLKTKTAKNVAAKFEEIILENGAPKKIQADEGTEFNNIKKILAPKYNFTLFHTQNRDIKAAHAERFIETIKDMIQRTLTMQSSYRFIKYLRIIVERYNEAPHRGIHNVTPVDLYKNEKMPAFLKFKILKNYLSGSQPPTSLLRAGQTVCIARIKNSIFEKSSLRRWGREIFIIDKVFITNPVTYRLKDKQNEKITGIFYREELQPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FL07</accession>
    <name>A0A6S7FL07_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">60S ribosomal protein L13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A053747</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the eukaryotic ribosomal protein eL13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000255">
        <property type="protein sequence ID" value="CAB3980078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FL07"/>
    <dbReference type="OrthoDB" id="10264538at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.110:FF:000003">
        <property type="entry name" value="60S ribosomal protein L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00499">
        <property type="entry name" value="Ribosomal_eL13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001380">
        <property type="entry name" value="Ribosomal_eL13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018256">
        <property type="entry name" value="Ribosomal_eL13_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11722">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11722:SF0">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN EL13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01294">
        <property type="entry name" value="Ribosomal_L13e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01104">
        <property type="entry name" value="RIBOSOMAL_L13E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3980078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="211" mass="24516" checksum="910712F5D3EB33BE" modified="2020-12-02" version="1">MAPKHNNMIHNNHFHKDWQRYVKTWFNQPGRKKRRREARVKKALRVAPRPFAGAIRPVVRCPTFRYNTKVRAGRGFTLEELKNAGISRKVAPTIGIAVDHRRKNRSQESLQANVQRLKEYKSKLIIFPRKASKPKQGDSEASELEMVKQLQGDVLPIQRMTMPIKARQITDEERNVSVFTTMRMARANKRLLGIRAKRAKDKAEEAALKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLV9</accession>
    <name>A0A6S7FLV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000118">
        <property type="protein sequence ID" value="CAB3978507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLV9"/>
    <dbReference type="OrthoDB" id="6597828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="27955" checksum="0A286ED80D56BA16" modified="2020-12-02" version="1">MESHINETLQTRKKRKNVAETAESKKSNTIKCQKLTNYFFVVPKSTNTEAVTAVDAEEKLTDEGDEDVQTESHPSQASYLLNINKIQNKVGKETISVYSEKIGSRKRQLAKCNICSEFEEQAKKRSRHGIVYIAHGVRCDSEEKLKNIIDHLHSEIHQAALDAKKYKELWASQDLNHPLVRVLKKQEQTTVENLIKLAIDVYNDSKLLTPSAWSWPARALATAHADQLISSLNENGLQSPFVPFEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FS65</accession>
    <name>A0A6S7FS65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 ubiquitin- ligase RAD18, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028466</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000504">
        <property type="protein sequence ID" value="CAB3982475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FS65"/>
    <dbReference type="OrthoDB" id="5976388at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097505">
        <property type="term" value="C:Rad6-Rad18 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006301">
        <property type="term" value="P:DNA damage tolerance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006513">
        <property type="term" value="P:protein monoubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039577">
        <property type="entry name" value="Rad18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003034">
        <property type="entry name" value="SAP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14134">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RAD18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14134:SF2">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RAD18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50800">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="93"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="114"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="179"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="240"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="284" mass="32091" checksum="D6C7A66A9749FA27" modified="2020-12-02" version="1">MKERGLSIKGDRQTLVKRHQEFTIIYNSECSKPKPKSVAEIVRLVEEGERKKNKAVEKRDKLNFDRDQTPEDIDKMKFEYMSQNQNEFTRLINEIRNRKKKDENNSDDSKSNEASTSKADQTPSTMKKKFALKLLPSDDDTASNSSGADFEPVQKRSNTPRRQLRSSTEKRKTRSSAEIPEEIVEDSCDDTSNTIGDEGEEECDCDDPVDPIESCITSATLPDPPSPSLLDDFDEKESNHSNAESSESESMLRPAFDPSSPTQDEIPESPPQGDDGNQSEEIEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G083</accession>
    <name>A0A6S7G083_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">aldehyde dehydrogenase (NAD(+))</fullName>
            <ecNumber evidence="5">1.2.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A075203</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.3" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020000449">
        <property type="protein sequence ID" value="CAB3981962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G083"/>
    <dbReference type="OrthoDB" id="310895at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004029">
        <property type="term" value="F:aldehyde dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd07130">
        <property type="entry name" value="ALDH_F7_AASADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.309.10:FF:000018">
        <property type="entry name" value="Alpha-aminoadipic semialdehyde dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="entry name" value="Aldehyde Dehydrogenase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="entry name" value="Aldehyde Dehydrogenase, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044638">
        <property type="entry name" value="ALDH7A1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43521">
        <property type="entry name" value="ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43521:SF1">
        <property type="entry name" value="ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="ALDH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3981962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="539" mass="58240" checksum="0B998FDA93A4DD00" modified="2020-12-02" version="1">MAMLRAFSKKLFTFPKSNLGFLSKCAYSNGGNLLIDEPEFSWLKELGLKAENDGVYNGIWKGSGESVTSFSPINGRPIAHVRQGSVADYEESVSLAKEAWKTWATVPGPRRGEIVRQIGEELRAHKENLGKLLCLENGKIYVEGVGEIQEYIDICDYAVGLSRMFGGRVFPSERPGHVLMEQWNPVGLVGIITAFNFPVAVYGWNNAIGLVCGNVNIWKGAPTTPLVSVSIAKIISKVIAQNDLPGAICSLVQGGTDIGQAMAADKNIDLLSFTGSTPVGQQVGVEVQKRFGRDILELGGNNAIIVMDDADLNLVVPAVVFACIGTAGQRCTTTRRLILHEKIYDEVLERISNAYKQIKIGDPLDQSILCGPVHNEKAVELFKTTLEDVNASGGKITVGGKVLDRPGYYVEPTIVTGLAHDSDVVLRETFAPILYVLKTKNLEEAVQWNNEVDQGLTSSVFTKDVGKIFQWLGPFGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGRESGSDAWKGYMKRSTCTINYSDDLPLAQGIEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G420</accession>
    <name>A0A6S7G420_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000305">
        <property type="protein sequence ID" value="CAB3980601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G420"/>
    <dbReference type="OrthoDB" id="8964826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19674" checksum="4954EF6BD60AA5D1" modified="2020-12-02" version="1">MEEGEWTFFYNIDETKYDIEYEVKTTLEEFHIGKESKCTRKVRKPTRRGRRAGKKKVCELFQQRNTQESEYRSIPVRITDRTYGGFNRDKALPVRPQYYKVISTRKEANLPSVLLANVRSLRTKVDEVGVVSRINNVSVVCLTETWLDDEISDSYVSIPGEYFRKMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6E0</accession>
    <name>A0A6S7G6E0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018960</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001381">
        <property type="protein sequence ID" value="CAB3988784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6E0"/>
    <dbReference type="OrthoDB" id="6784245at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="18"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19950" checksum="38E9D38A9E8A9F3A" modified="2020-12-02" version="1">MLIPVFDSRNNSRKTNNDLTSSDSDDASTVSDVENINSSDPESLETLLTDDIGLTNPESHEITVGKYYGVFYPNAKGKLCDNAFFIGKCVSIEDEDVKFAWLKLKSLANWSFCWPKKADIELLDPRFIFAGPLRIIGTPWSGYTFPEIDKVIMLYKEVQNHWKSQSSLPHNFGYLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9E9</accession>
    <name>A0A6S7G9E9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026506</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000918">
        <property type="protein sequence ID" value="CAB3985769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9E9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="87"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13869" checksum="5469F2F14B184F84" modified="2020-12-02" version="1">MAYTQERQKYEVCDHLSQASVTKHSQLSRPNTIEEIRRKRSKRRRKNHHEERKLSTKALKRKLSEKFRSNLRQVNGKFVEKLEAEKNRADENRRKAEHFWREGHKGKSLKQQEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIW1</accession>
    <name>A0A6S7GIW1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000634</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000800">
        <property type="protein sequence ID" value="CAB3984911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIW1"/>
    <dbReference type="OrthoDB" id="8936366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="28365" checksum="BB1027C8581979B0" modified="2020-12-02" version="1">MVSQLIQKSAKKSCALDPMTTSLVVKSLNELLPVITCMTNSSLSLGYFPAAWKFTLVDPRLKKTGQPASLSNLRPISNLQFFSKLTERAVSDQTLEHIKCSDIYPILQSAYRAGHSTETALLKVHNDIMCSMDQQRVSLLVLLDLSAAFDTVDHQVLLRSLEVSFGITGTALKWFKSYLTNRSQRVLINGNYSESFSLPHGVPQGSCLGPLLFTIYASKLFEIVKCHLPDVHAYADDTQLYLSFKPDVVLLMSLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQK2</accession>
    <name>A0A6S7GQK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Jerky homolog-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A002611</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001993">
        <property type="protein sequence ID" value="CAB3992172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQK2"/>
    <dbReference type="OrthoDB" id="5954031at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050863">
        <property type="entry name" value="CenT-Element_Derived"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004875">
        <property type="entry name" value="DDE_SF_endonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006600">
        <property type="entry name" value="HTH_CenpB_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19303:SF74">
        <property type="entry name" value="POGO TRANSPOSABLE ELEMENT WITH KRAB DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19303">
        <property type="entry name" value="TRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03184">
        <property type="entry name" value="DDE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51253">
        <property type="entry name" value="HTH_CENPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="396"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="571"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="396"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="428"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="439"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3992172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="609" mass="68729" checksum="EC32CE6D58140986" modified="2020-12-02" version="1">MSAQTQEKSVRFQQAMVDVRDRGMSIREAAAKWEVKKTSLHNRVIGKVEYDRRSGPSSILTKAEESRLADWLMEVAQRGFGLTKDDLLDAVKKLVEADKRKTPFVNNRPGNRWYRSFMKRNPSVRLRSARPLEKKRAKISSRDLDQWFSGYEKFIHDHGLANCPAQIWNCDESGFDLQGRAGKILGPSAAKEKPYRVLTGTKEHITVLPCFNACGQWMPPYILFVGKRIPKTYNPLDGGVSGSVYSVTEKGYMDTPTFYMWFANHFIPQLPPQRPVVLLVDSHESHIDLETFELAKKNNIHIFALLKNATHLVQPADVGLFGAMKQTWYKHVRIYNQQNPNTDITKKNFCSIFKSTWEEVMRPSILVDAFRKSGIFPLDRSKITDDQVKPSLVYNTSSVSTTSPTSATAVSPSSIPTSSNSEPPTSTVLTAASRETNPSGTASSSQTSSVPCDPKKSAFDALENTLQTPTKSKYRRRVEEGYDLPGSPIFMAWKQLYELEATPSTSSYSSVYQTTSHQVSPVLDNILVYPSTSDHTKKAKNKISVPNFMTGEASMKILLDEKLKKSRELAEKQKRLREREEKKEVEEKENGGKENVKETKQNKCKTEGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GX28</accession>
    <name>A0A6S7GX28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Keratin-associated 4-12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038934</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002535">
        <property type="protein sequence ID" value="CAB3994769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GX28"/>
    <dbReference type="OrthoDB" id="6616165at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045095">
        <property type="term" value="C:keratin filament"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053330">
        <property type="entry name" value="Mucin-22-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37000">
        <property type="entry name" value="MUCIN-22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37000:SF3">
        <property type="entry name" value="MUCIN-22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="123"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3994769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="50011" checksum="A3AA53A19736C06A" modified="2020-12-02" version="1">MKSSANSETPTSELSETESSAVIEHEVAVSSKHSTETGSPRSKAAGTAKLPKRDYSKYKHVCLLCAKNDTATARNSAVLTRGGDFQVERHRKSHHSSISLKDMKSHVVPINHISVTRNVRELAVPKPSSETKDKTGATHDNGTIQKNKISSAMPSVSNDALPQTESNKSLASEGNLNENINNDDITITAGKNQIQKDLSDFVTVTSQTFEEKMVHMIEKLSKKVDNLKQVTPPMGPRNTGTTETMTCDPRQYYMTNFCLVKLNCDTLNCETSNCDTLNCETLNCETLNCETSNCETSNCATLNCATLNCETLNCETLNCETLNCETSNCDTLNCETLNCETLNCETSNCETSNCATLNCATLNCETLNCETLNCETLNCETSNCETLNCDTLNCETSNCETSNCETSNCATLNCETLNCETSNCDTLNCETSNCETSNCETSNCDTSNFASFDPSSYAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8B6</accession>
    <name>A0A6S7H8B6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Multidrug resistance-associated 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A069143</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004243">
        <property type="protein sequence ID" value="CAB4002045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8B6"/>
    <dbReference type="OrthoDB" id="6500128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF456">
        <property type="entry name" value="MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="90"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="192"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="277"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="315"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="12">
        <location>
            <begin position="193"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="11">
        <location>
            <begin position="422"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="367"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="373"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4002045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="553" mass="62827" checksum="586BC4259E190274" modified="2020-12-02" version="1">MHHENVHRKDRANIISRVLLWWIVDLLWRGYKNPLNQEYLDPVREGASAAHQTKRLEGIWNNEKISARQQNKKPKLWKAMIKYFTWQEHALVNCLMLLNVFGTGIYFYSVTNLIKAIGSNLEQGTHSPNEYLIFIGFMMIGSSCEVLGSQHSCLLLPMLGIKARAALVGLIYKKVLRCSKMSMNAGEVMELLLYFVGWKFLPGLGVFTILALFRLCMTKIDINYRKKASQFAEKRLGYLREVLTIIHSVKLNCLEHVYEKKIRRTRWQEIKYKAKRWIILSASFSFTTCGQHLSTFVIVLVLIYTDRSMLTFDNLFKIMVMSVGIGEIICLKLPISIHFSTGIITGLTRIQQFLESCDATHDTINEFPPTKGKVSEIDEKSRDDEKSSEVVRETPYVCLDNVFCKLLTSNASYAQTEDVILLTDISITISSKQLVIITGSVGSGKSSLLLSILHGELHLAKGSVKQFGNIAYVPDTPWVFPGTIRENILFGLAYDEEWYSNTIKACQLERDFKRFPDQDLSHIGEHGATLSGGQRTRIALARAVYSRADISTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HDT3</accession>
    <name>A0A6S7HDT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067493</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004349">
        <property type="protein sequence ID" value="CAB4002419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HDT3"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="391" mass="45244" checksum="29D44D332C1B40D1" modified="2020-12-02" version="1">MDDGELIGSVFMDFSKAFDLVNHDVLLRKLAKYHISQQTLQWFTSYLDGRSQQCSVLGSLSRPLMLEQGVPQGSILGPILFSIYINDLPMSLGETNADIYADDTTLWSSSKSCDEIQQTLQNALDITEQWLTVNNMVSNTTKTKKLLIGTVQKLRHSDKDELDLYLNGTKVGEIKNEKLLGIKLDKHLKWNKHIEYLIRKLNSRICLLKRAKEHLTIHCRKLLYNAIIKPILEYCCTVWGNCSKEQLIRLLKIQKRCARLILNANFRDNSVKLFTELGWLPISDIISCRKLYMLHKISLGHCSDYFSEYIRYLKDSHNYNTRASTNRNAVIPTYKKVSGSRMFQTSAINLWNTVEVSLRDMLSHKQFVNKLEQERLLENAQLQHFSIETTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HI21</accession>
    <name>A0A6S7HI21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061807</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004837">
        <property type="protein sequence ID" value="CAB4004226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HI21"/>
    <dbReference type="OrthoDB" id="10055784at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="47231" checksum="8CD1CE4B1A0EF923" modified="2020-12-02" version="1">MFKSLSCKDKEKIIRDKGLCLNCFGKHIRKQCKEKLKCTVDNCQQNNHYLLHGVGIYPRFPERRYKPPDADLAGEQGSGTKTSQEKKKEEVPVKENQSSNEVHTGRAAASQQRIVHQIIPVILYGPSGKRKTMAMLNSGSNATLIKEELAHQLGFSGQTNQLVLGGANTDETVKSFVIRNLTISGTGRRRSKYTIDKVLTVPQMNNPTYAVDWTAKTRFDHLKDLDLQPVDAAELQLAIGVDSYFLQAPLETREGPRGTSIAIRTRLGWLAFAILPSEDDSDVHVRCLDVEHTTELRTNGDFQWQLEQWINMETIPPVRKKTEIRSIEDQKALDILHTTTKRLPSGDAFESGILWRDPEVVLPNNRKAAEAQLHALERRLDRDPQLKEAYQASITNDVEKGMQLEKGRTFIESQAHVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMC5</accession>
    <name>A0A6S7HMC5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Prostaglandin F synthase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A011575</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aldo/keto reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002956">
        <property type="protein sequence ID" value="CAB3996830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMC5"/>
    <dbReference type="OrthoDB" id="416253at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd19136">
        <property type="entry name" value="AKR_DrGR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.100:FF:000002">
        <property type="entry name" value="2,5-diketo-D-gluconic acid reductase A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43827">
        <property type="entry name" value="2,5-DIKETO-D-GLUCONIC ACID REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43827:SF3">
        <property type="entry name" value="NADP-DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000097">
        <property type="entry name" value="AKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00062">
        <property type="entry name" value="ALDOKETO_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="4">
        <location>
            <begin position="20"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3996830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="293" mass="33258" checksum="1999E5111D00F759" modified="2020-12-02" version="1">MAAGLVSSCVLNSGQTMPMMGLGTWQTRSSDGDDVVFKAVDDALKSGYRMFDTASVYKNEADIGRCLKLLLPKYNLKRSDIFITSKLAPSDQGFDSAYKACLQSIDKLGCEYLDLYLIHWPATSKLKRDDPKNLEYRSQSWKAFEKLQCEGHAKSIGVSNYILRHLEEMKTYSSVVPAVNQVEFHPYLYQKSLMEYCRANNIILQAYSSLGIGKLVGDPVFVDMGKKYEKTSAHILYRWAIEHDIAILPKSTNTKHIKENIEVFSFSLTTEDMTKLDNLNKDTHFCWNPKEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HT65</accession>
    <name>A0A6S7HT65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006109">
        <property type="protein sequence ID" value="CAB4008396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HT65"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="34425" checksum="6E8AB5F8F90C5DE0" modified="2020-12-02" version="1">MHQRSCRVIDDLEDELQQQMSEVLTEHQNEDNVDSVNPEISHINTQVNFPDLKKGIKLPKSPLQWSTANDFFKQTFSNLPITPRDLNNNINTMATVVYNYFSENFGYVNNRNDVQYQRKYESFLTKDLKKSLKKLKLENGDMLEIKFVAKKLRNLLNKSNTTDPNNTDSHASANINHDSLIGKSFCGFVKRFFKKNTSSFPSFNLAECTSYFTKTLSAISPNKTFNIPIWIPKFASPQTPFNLDPPTYQEITNVIRKMKPSGSPCPLDQISIICFKRCPYLRSYLTEIIHAAWSCGVVPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUK2</accession>
    <name>A0A6S7HUK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DEAD DEAH box helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006386">
        <property type="protein sequence ID" value="CAB4009244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HUK2"/>
    <dbReference type="OrthoDB" id="9950850at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="12875" checksum="EC6D1C6D90AA0481" modified="2020-12-02" version="1">MIRRVRQRTKRKVAIVGAAKVAAKAIDNREIQVSVKQQIHLGLVHAVGQDSAVGQDSAVGQDSAVGQDSATGQDSAVGQDSTAGQDSAAGQDSATSQDSATGQDSAAGQDSAVGAGENHRVPVRMVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXC1</accession>
    <name>A0A6S7HXC1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Complement C3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A033170</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the protease inhibitor I39 (alpha-2-macroglobulin) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006373">
        <property type="protein sequence ID" value="CAB4009199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6359008at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02896">
        <property type="entry name" value="complement_C3_C4_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.1930:FF:000001">
        <property type="entry name" value="CD109 isoform 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.130.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1930">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.50.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.690">
        <property type="entry name" value="Alpha-macroglobulin, receptor-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036595">
        <property type="entry name" value="A-macroglobulin_rcpt-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050473">
        <property type="entry name" value="A2M/Complement_sys"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011625">
        <property type="entry name" value="A2M_N_BRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047565">
        <property type="entry name" value="Alpha-macroglob_thiol-ester_cl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011626">
        <property type="entry name" value="Alpha-macroglobulin_TED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041425">
        <property type="entry name" value="C3/4/5_MG1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001599">
        <property type="entry name" value="Macroglobln_a2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019742">
        <property type="entry name" value="MacrogloblnA2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002890">
        <property type="entry name" value="MG2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041555">
        <property type="entry name" value="MG3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040839">
        <property type="entry name" value="MG4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11412">
        <property type="entry name" value="MACROGLOBULIN / COMPLEMENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11412:SF166">
        <property type="entry name" value="NTR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00207">
        <property type="entry name" value="A2M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07703">
        <property type="entry name" value="A2M_BRD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17790">
        <property type="entry name" value="MG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01835">
        <property type="entry name" value="MG2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17791">
        <property type="entry name" value="MG3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17789">
        <property type="entry name" value="MG4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07678">
        <property type="entry name" value="TED_complement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01360">
        <property type="entry name" value="A2M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01359">
        <property type="entry name" value="A2M_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01419">
        <property type="entry name" value="Thiol-ester_cl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49410">
        <property type="entry name" value="Alpha-macroglobulin receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="Terpenoid cyclases/Protein prenyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00477">
        <property type="entry name" value="ALPHA_2_MACROGLOBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0646">Protease inhibitor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="6" id="KW-0722">Serine protease inhibitor</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="930"/>
            <end position="951"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1376"/>
            <end position="1399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1411"/>
            <end position="1439"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="936"/>
            <end position="951"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="1379"/>
            <end position="1399"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4009199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1480" mass="164025" checksum="952D5B3F4DB67C62" modified="2020-12-02" version="1" fragment="single">AKYFIAAPNLLRVGVEETVSISVFDVNVDVDIQLSLQDFPNRKRTFSQVRGTFRKQQPGLLKIKVNAKDLHDQKSLDKQYVYLKASSSTPGFQFNNEIKVLVSYQNSMVFIQTDKPIYNPGQTVNLRVVPLGLDLKASMNNVTIEVLNPQGIRVERWGNLNTNEGFFSRRLDLSDNVMLGMWTISALYGHGLVQNASIQFEVREYVLPTFSVKIERPPYILENDPSFTIKVISKYTYGKPVLGTVRMDLAVLDDAGKAERFSMSVHPLRNGEADVTISTDLLKQHPKIVWFPDGKRLFIEAKVIEQATGQEEKALDNTVYFTNTPLKISFKRSPRFFKPGVPFEIKVDVSYPSGKPAKNIDLEIDAKTNDGTAVLERVAGGKASGDTTNQLGHGRFVVDVPRTFTISFLDIKVKAKINKGGQDIISQGRFQPKMYQSSGNNYLFVRFLTKPRVGQSVDGEAFVLSSGQPSSLTYMVVANGRIINQGTIARNLGVLTTIRILVTSAMSPQARFVAYYRVNNELVVDSAILEVEEELPNQVSFLGDQHPQKIPGDSHKIEIQSSPHSKVGILAVDQSVYLLRNDKHLTSDEVYKRMKSHDLGCGSGAGQNNKDVLNRGGLAVMTTINNIKTDTRPDYSCAAGARRKRRNAVVVVDPQCCQLGEKVDAGTCQARAMNFSISNQSSSFHPRDDCVIQFYKCCYKRFEMDVRQRSGDVDVPNNLLNGLGLDQDPELLKLLLEEAQLRTNFPEKWLYEDGKAGKDGRVSFRVTVPDTITTWVMQAIAVSNTTGFGLTPPFNLRAFKPFFVSIKLPYSAQRGEQVSVIATVFNYKNTAEMVSVYLFKRDGDDYCTYSNFGAGSSLYKVRVDANGAASVSFPVVPTEVGDIPIQVRIISSNGDGDGEQRRLKVLPEGMERQQTHSVVLDPLDVLRDPADAKPSAASTTPSKIQTSTKGNGIQKNRLSLRLPGSTVPESEYAVLKVIGNLIGPAVSSIIEGRGLDSIIKLPTGCGEQTMLKLAPNVFVLNYLRSTKQVTQQIEQTAFNFIRSGYQRELNYRRSDHSFSAFGNSRPGSTWLTAFVIKTFCAIQKLDGIDIDQNVINTAINWLASRQRADGAIPESNPVVHQEMDGDINSDITMTAYVVTTFLECKSFTANSVQTVKNAVAYLENMQPNVGRVYVKAVIAYALALANSPLKLNANQDLLNSARYDAGKNTRYWHDGQGGNAIDVETTSYALLTQMALQRRGYAGPIVVWLTEQRKGGGGFISTQDTCVALQALAAYSEATGGDQLNLRIEITTDREYKKTLMINQKNALVQQQLDITNLIGDELFIQTKGSGVAQLQVETQYNTPPTKQEVCQFDLSVSTIERVRRFHDQPILVVPKPTKAPKKRKPKAKGRRNKKCRRKNGRRCKRCKGRRCNRRRNKPKPTTPARPVSTRALPNDAPAPNSVSIKICARFKKAGASAGMSIIDVGILTGFSVKQETLVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZ18</accession>
    <name>A0A6S7HZ18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007213">
        <property type="protein sequence ID" value="CAB4011625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZ18"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="14650" checksum="558EBD81FB911A22" modified="2020-12-02" version="1">MPPVKLFVPYAMFRHLCNVAVGYGGSMKSSKTTLAVNIESFEAASKIFSPVGFGGQNYLKKRLFDKMRVNSRTILQYSGRASVVVGKSTPVIFDYNMKQEKLTLIFYVQRYDKADFCLDLRLQALMNKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZC3</accession>
    <name>A0A6S7HZC3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Polyglutamine-binding protein 1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Polyglutamine tract-binding protein 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A000504</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="14">Interacts with POU3F2/Brn-2, ATXN1, TXNL4A, HTT and AR. Interaction with ATXN1 correlates positively with the length of the polyglutamine tract. Interacts with RNA polymerase II large subunit in a phosphorylation-dependent manner. Forms a ternary complex with ATXN1 mutant and phosphorylated RNA polymerase II. Interacts (via C-terminus) with TXNL4A and CD2BP2. Interacts (via WW domain) with ATN1 and SF3B1, and may interact with additional splice factors. Interacts (via WW domain) with WBP11; Leading to reduce interaction between PQBP1 and TXNL4A. Interacts with CAPRIN1. Interacts with DDX1. Interacts with SFPQ. Interacts with KHSRP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasmic granule</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus speckle</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007257">
        <property type="protein sequence ID" value="CAB4011755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZC3"/>
    <dbReference type="OrthoDB" id="42462at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016607">
        <property type="term" value="C:nuclear speck"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043021">
        <property type="term" value="F:ribonucleoprotein complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000380">
        <property type="term" value="P:alternative mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00201">
        <property type="entry name" value="WW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001202">
        <property type="entry name" value="WW_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036020">
        <property type="entry name" value="WW_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21737">
        <property type="entry name" value="POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21737:SF3">
        <property type="entry name" value="POLYGLUTAMINE-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00397">
        <property type="entry name" value="WW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51045">
        <property type="entry name" value="WW domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50020">
        <property type="entry name" value="WW_DOMAIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0391">Immunity</keyword>
    <keyword evidence="5" id="KW-0399">Innate immunity</keyword>
    <keyword evidence="6" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="11" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="10" id="KW-0804">Transcription</keyword>
    <keyword evidence="9" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="WW" evidence="16">
        <location>
            <begin position="71"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="13"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="171"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="15">
        <location>
            <begin position="17"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="15">
        <location>
            <begin position="28"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="15">
        <location>
            <begin position="171"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00042167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00046362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4011755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="241" mass="26678" checksum="574831B84E32D84E" modified="2020-12-02" version="1">MPLPAALQARLAKRGLIKTDEPEKENTDANQVSSGKCPNTSNPYHECSEYCRKRWGSPAETNTNEAHYQQMMLPPGWFLVPDNTSGASYYWNTMTNQVSWLHPLNPKAQITNPVMSDGRGHEVMPNTAIPSPLVGSDEREQVLNIGKHPSLVKGSQKKMQAAVKRKQQEQEARARKKKMDDLDPLDPAAYSDVPRGTWSTGLVDKGDAKTGVDTTANGPLFQQRPYPSPGEVLRRNAAIKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4S6</accession>
    <name>A0A6S7I4S6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA 3'-5' helicase</fullName>
            <ecNumber evidence="5">5.6.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A022168</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020007609">
        <property type="protein sequence ID" value="CAB4012716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4S6"/>
    <dbReference type="OrthoDB" id="10037776at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF105">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE Q1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEAD/DEAH-box helicase" evidence="6">
        <location>
            <begin position="29"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00034808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4012716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="157" mass="17762" checksum="210B591BCE684217" modified="2020-12-02" version="1">MASCTFESCLSTVLENLEHRSYFFQLKDEQKRALRSLFERQDVVGILPTGFGKSLIFQLLALLATEMFMRQGEEKQCALEQGFIDACLKNENGHFHNNMAAVVIDECHTIETWTGKRKSGAKGEKTRQAFRGRFGDLVMLRSLRKEGTPFLALTGHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDQ0</accession>
    <name>A0A6S7IDQ0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059122</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009350">
        <property type="protein sequence ID" value="CAB4016984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDQ0"/>
    <dbReference type="OrthoDB" id="5960351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="33293" checksum="226F315E0BF68B5D" modified="2020-12-02" version="1">MIELSEGLKLAHLNILSLRNTAHFLQLKELVRTNRIDVFTISETWLNTTITNKKLKIDGYKLHRLDRLYKKGGGVCAYVRKNIRSSVIKELTQISDTSFHQLWINLQCKKTKSLLACVCYRLPDCPLDCFENSLKPQYVHALGMRKPIIILGDLNCNMLNTTSRECKSLTEMTSELNLKQIIESPIRITDISQSLIDVILVSSPNTVRDSGVLNCTISYHLPVYVTLKLKSTKPPPTNITVRSYRNYDHELFAADLASKSERLLSIFSVNDINEKLKIFDDVLDSHAILMPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDV4</accession>
    <name>A0A6S7IDV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084397</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008876">
        <property type="protein sequence ID" value="CAB4015866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDV4"/>
    <dbReference type="OrthoDB" id="7698392at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="314"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="314"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="345"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="858" mass="96465" checksum="0AEE49E4507D13E4" modified="2020-12-02" version="1" fragment="single">MDEENNQLEQEITSADQEEDLLAEGDENVEENPEMEAGQERLMAMMADMNDKMDSFLTRLSRVEAAHGRPAAKKRRVVARPDNLEDENNLSAAERGFSDSERLTDGTKDGKAPKTPNTSAAEDELLSEIAQDYAEETQTSDDVSQTLAEIVNQRWSSKLEEPKLKDKMDKYDRPKNCEKLTVPRVNPEIWSTLNHTVRGSDLKLVNFQKTLVKVGVALTQSTKALLSMRATQSSSDAEHKQQLGKLVTYNTDALAMLGHIHMELLNRRRELIKPNLNKEYVSLCSPQTPITELLFDDDLQAQMASIKAANRISQSTTSSSKFNPNTRRPFEGAKNRLKGKPFAHSSHTNEQTKVPSGQEKELPVAVTETTTNFPNISQVNVLTVNTLVSYFQSKVACFKAGRLSLFYNEWESITSDGEVLHMISGQKLEFSKQPYQLYVPRDKSIVNACWDSDQTHTCEVEIQNLLEKGAIVPCEHEKGEYISPIFTTPKKDGSSRMILNLKGLNQFIEYRHFKMESFSSIVNMVKPNCFMASIDLKDAYYSVPIAAEHQKYLKFSWERQLYKFVCFPNGLAFCPRKFTKLLKPVNSHLRQLGHISVSHIDDSYLQGDDYDDCANNVLDTTRLLDSLGFIIHPDKSSFIPNQVVTILGFKINSTVMRVFPTAEKIKKIQASCLELLHSPSPSIRQVASVLGLLISNFPAAQFGPLQFRDLDMDKTEALKQNQGNFDRPMKLSKTSCADLHWWINSADSLFKPIALNQPDATLFTDASSQGWGGVLGEQKSGGHWTALEASHHINYLETLAVFFALKVFQTKLSGKHVCVRIDNMTAVADIAHIPGLENEAADAKSRKPLKETEWALDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IH87</accession>
    <name>A0A6S7IH87_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010544</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004383">
        <property type="protein sequence ID" value="CAB4002548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IH87"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="418" mass="46728" checksum="B123E90234689B51" modified="2020-12-02" version="1">MDELSPVAEINDPDLICISETWLDPSILDLTISPYRKDRGTPGGGLITYVKTAIPSSRLFDMEEEGKEALWLLLKPQRLPRPFSCIVMVAVYYPPDQAAINETTMIDYLTNGIDVILQSYPSAGIIIAGDFNKMKLGTLCNCFDFRKIVKKPTRQNNTLGQIMTNMSPLFQEVQHLPPLDEVESLLKNYPLPLPSIGQIKSVLNHFNHSKTTGTDGVPAWLLKRFSSDLAPIVHDIITASIKQCKYPSHYKHGLVTSVPKAYPPTDWPLYYIGSDSITQTWFNATDNTCRDKAGIRALFIDFKKAFDLVDHGILLNKLVLMNVNKSFWLWVKSFLSGRTQQVKINQTLSSIEGCPAGVPQGSALSPTLFNIHIDDLDTSVPEDLEVSTYKYADDCTQSECIMKGECSNMQKVLDSVQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPM1</accession>
    <name>A0A6S7IPM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine- kinase HT1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011299">
        <property type="protein sequence ID" value="CAB4021164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPM1"/>
    <dbReference type="OrthoDB" id="5974690at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044773">
        <property type="term" value="P:mitotic DNA damage checkpoint signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44167">
        <property type="entry name" value="OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44167:SF24">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE CHK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="28863" checksum="2174EAAC031949D1" modified="2020-12-02" version="1">MRRSCVRRLCDIRAEANQQRDVASKYYKLWKRTVDKNKKLRTIVNQRESNKKVTQLNMSNSNINIIRQDELEEIDAGSIGNGVFGNCFLRKFKRLSINIVEKQLIDTDNNVDMLYKEASFMQKFSHRCIPLLLSIQLEKKPFSLIMEFIGENSKSITVFKLLFDPHYEHQASEMSTETWLCICYDITDALDHMHQRGYLHCDLKSNNVLVAQNKGFLIDFGKVCEISRPKAKKYKELNTTLLKLSNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3Z3</accession>
    <name>A0A6S7J3Z3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nose resistant to fluoxetine 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044779</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012652">
        <property type="protein sequence ID" value="CAB4023740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J3Z3"/>
    <dbReference type="OrthoDB" id="207378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052728">
        <property type="entry name" value="O2_lipid_transport_reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11161">
        <property type="entry name" value="O-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11161:SF0">
        <property type="entry name" value="O-ACYLTRANSFERASE LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="582"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="582" mass="66457" checksum="2E5868D9245BB8AE" modified="2020-12-02" version="1" fragment="single">CLRCYIGCCGTSLKPTIPQLTNKRVYLIHHGSACSTGGPGYDAGARWSLALCAVLLLFCLIGTILDAIIEAYNTSEENTSPSDQNNTVELQSVTIPPQANNTLTRQTTSSTALHPPEETIRFGPPRFLKSKLCEVFLCFSLLRNTKKIFSTNVPATAITSINGIRVFSIWWVILGHTFLYVLISPIVENKAQTVEDSKLLSILPVTNAYFAVDSFFFLSGLLVAYTCFRKMAKSDGKFNWILFYVHRFWRLTPSYMFVILFTVHLKGLISDSLLWQYTYKDPFCSDKWWTNLLYINNFYPEEFTEQCIGWTWYLANDMQFYVISPILLILAFKYGWRGLLSSTGTLLLISTIVIAALIGAYDVDPIINLKLLHFTDETAKKSRDNSNYIYSKPYCRIQPYLIGFILGYAIYMKYRGPIKRRGWLIALIGWSVAFAIAMTVVYAPHESVVPGNREWNMTENIFYGTFQRLLWGLVLAWVTYACHYGYGSYIQQFLSARFWIPLSRLTYSVYLVHIIVLQFMLTAVNGTIHYDIPTTSYYFIAATVLSYAVGFILAVVIEFPSENLENLVLKFLQERKKYAVNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J787</accession>
    <name>A0A6S7J787_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013283">
        <property type="protein sequence ID" value="CAB4024880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J787"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1037" mass="119183" checksum="9CFC164B99A5AA85" modified="2020-12-02" version="1">MIRVNLLALFSTLIICGFCGKDFVSLGRHSWRCKSKVEYGQETRVNAIPAIEIPSQECLPVKSYKAVKCCCGKVCKGARGLKMHQRSCRVIDDLEDELQQQMSEVLTEHQNEDNVDSVNPEISHINTQENFPDLKKGIKLPKSPLQWSTANDFFKLTFSNLPITPRDLNNNINTMATVVYNYFSENFGYVNNHNDVQYQRKYESFSTKDLKKSLKKLKLENGDILEIKFVAKKLRNLLNKSNTTDPNNTDSHASANIDHDSLIGKSFWGFVKRFFKKNTSSFPSFNLAECTSYFTKTLSAISPTKTFNIPSWIPKFASPQTPFNLDPPTYQEITNVIRKMKPSGSPCPLDQISIICFKRCPYLRSYLTEIIHAAWSCGVVPSEWKKACTILIHKKGETANPANFRPITLESVPLKVFTSCLRNRTFQFLAENNYIEQNIQKGFTPKLSGTLEHTAQLAHIINKARVKQRSLIITLLDLKNAFGEVHHNLIYEVLQYHHIPDHIKNLVSSLYTDFQTSIITEQFNTSFITVGRGVLQGDCLSPLLFNMSFNTFIQHIKSEKYRQLGFWKSSENGTPLNPLHWFQFADDAAVVSGQEKENQMLLNRFTIWCQWAQMIIRVDKCSTFGIRKQVTKSIQYLPKLFINNCLVPRVELGKSFRYLGRYFDFNMSDEDHKSEVYDTLTNILNEIDDLPLHPKNKILLYSRYVLSKISWHFTVSDIGKTWVNDKLDSIASTYIRKWLELPISATLSNVLLPHNKFGLNIILPSTKFLQCQTVSRKALKSSPNEAINNLWKDTSNHKNVQYDKYKNTKDVLNTIRKQHEDKLQHHLISQGSFFSNIIKHSTLSFNSIWSSVQSKLPKNIFNFTIRYINNTLPTRKNLLKWGISPTSECSFCLNPESLLHVVAGCKTYLNEGRFTWRHDSVLNFIASILKSVNHCNLYADLPGYISPSVITGDELRPDLLITLENKCIYILELTVGFESNLLTNATRKRQKYQDLINEQLKNYEKVKFVNLSISSLGVFSHPSLDFTEMLKDLKFDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8R8</accession>
    <name>A0A6S7J8R8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">60 kDa heat shock, mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A007603</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014523">
        <property type="protein sequence ID" value="CAB4026978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8R8"/>
    <dbReference type="OrthoDB" id="1733909at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="entry name" value="GroEL-like equatorial domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="entry name" value="TCP-1-like chaperonin intermediate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45633">
        <property type="entry name" value="60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="GroEL equatorial domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0346">Stress response</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4026978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="26812" checksum="5CE7C661F9391C46" modified="2020-12-02" version="1" fragment="single">MLRESRSKYINSICDDHGNNPKRFWSLFKLKTKSCNVPEKVSMGVEGNSRKYSETPADIATLFNNYFTSIFTNEPDTSIDPSTIDDNISLLEDVVLTSDDVANGRNVIIEQSFGGPKITKDGVTVAKAVDLPDKFQNLGARLVQDVANNTNEEAGDGTTTATILAKHIAKEGFEKVSRGANPQDIRRGVILATEHVVSHLKEMSKQVTTPEEIAQVATISANGDRSVGDLISSAMKKVGKNGVITVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9E9</accession>
    <name>A0A6S7J9E9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A087442</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008045">
        <property type="protein sequence ID" value="CAB4013842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9E9"/>
    <dbReference type="OrthoDB" id="10574894at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="91"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="19"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="97"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="311" mass="36177" checksum="615315E7CA664920" modified="2020-12-02" version="1">MEESSTQTEDREYLLNKKIEALEGVKKVQAERIKELKMELHAYKQSSNVPNGVPLGDTIGKVRELEMSGLAMDELDHSPLHLELEQLSIQGGEDNEDGHGPNRAQDTDNFKQENSSTLPRFRREYYCPTSCVSRVISFIFDQMRLPVCNTRLHKEVQKDLCSLSKFPDVDCEVGECSLAFKDFHDVGLIEKQHMFLAKIENAEERGRRLKEAIDTMEGESHPALFIMHYELYQDGKKRDGHSLAIMPNGEFIQVKEKRQWKPEQDQLWKSVTQIEVWKVEKKTAEDWEKKCGWKKCTRACIYSRNRKEKHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAH6</accession>
    <name>A0A6S7JAH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030398</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014637">
        <property type="protein sequence ID" value="CAB4027171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAH6"/>
    <dbReference type="OrthoDB" id="10067249at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46670:SF3">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="677"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="677" mass="78068" checksum="0FA75B1EF14D3661" modified="2020-12-02" version="1" fragment="single">MAGSQTILATSNIPVILNQRLNRTKKHCPRRVNMNNLTYVKCTNRQKNCFVPIKFCLLNTRSINKKELILKDFTVENDIDIFAVTETWLRHDNTFSVAEVCPKGYYFHHIPRKNSRGGGVGVLLKKSIRIKTQSQRKFISFEYIDVTMECSNSRTRMVIIYRPPSSKTNQLTNSQFFDEFCNLMEQLIILPGNLLIAGDFNYYVDNSTNPDTIKFNKILESFNLQQHVNGPTHKKGHTLDLIITRIGDRLVTNIEIHDPMCAEIQYRKLRNINMDSFNEDLGKSNFSSDSELPTIIDQYEKTLEETLQKHAPLKRRTITLRPSAPWYNEEIGKAKRHRRRLERRWRASRLCIDKEIYIKQCQIVNDMIKEAKTTYYSSAISNNKYNQKVLFDTVDKLLHRKPEKCYPTTSSKTELVNNFGDFFSNKIAVLRSDLANISTYDSQLRPAELLTQCVEFRVFQTVTEQEVENIVDANGKRCCELDPIPATILKGCKKTLLPTFTNIINKSLETGCMPVQLKEAMLKPKLKKSNLEFEEHSNFRPISNLKFLSKIIEKAVATQLMEHLVNNNLEEPLQSAYKRFHSAETALLKVQNDILIATDNQKCVVLLLLDMSAAFDTVDHEILLERMSKRFGIKDKVLEWFQSYLQNRTQTVMIDGVKSAAKDLNWGVPQGSVLGPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBC8</accession>
    <name>A0A6S7JBC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042721</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008299">
        <property type="protein sequence ID" value="CAB4014432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBC8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19617" checksum="68C30EA0F3700669" modified="2020-12-02" version="1">MILTPRGSPKSVGKKGVKTGSSSVSTSNIDSIMDEFGAMEIVDESHSTVESTSDTQLALQAEVPCFQDKPQNAEEATCLDEFSSQNKELKKHIKTVTDQFSEYVALSEKIIGKQSYIIELYHHIVTNGGTLGGLLSLSERCEITNEIKKVRGIFNLGIRIRKLKILCQFLNQHFLIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBJ5</accession>
    <name>A0A6S7JBJ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073867</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014140">
        <property type="protein sequence ID" value="CAB4026330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBJ5"/>
    <dbReference type="OrthoDB" id="7444419at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954:SF3">
        <property type="entry name" value="PROTEIN CBG08539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954">
        <property type="entry name" value="RETROVIRAL PROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4026330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="23929" checksum="51EEB5CC3B5AEA53" modified="2020-12-02" version="1">MSEEATKKRKIRGGHRTSTKRTINASSTILDDFDPSNKQLTEKLLQQKITLKEKLDILQNLDNDILAITEEKDIEREIEESDLLRETIHATIVRIDSVYYTSHSSAKIKLPKLSLKKFKGDIKEWTPFWDSYTSAIHDNLDLSDIDKFNYLNSLLESKAAEAIAGLKITSANYQEAVDVLNQRFGDKQQIINSHMDSLLQLPAVTSLHDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JD38</accession>
    <name>A0A6S7JD38_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041462</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015335">
        <property type="protein sequence ID" value="CAB4028231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JD38"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14273" checksum="F5908422D3FCD1F6" modified="2020-12-02" version="1">MEKHSNETLLCLKKLSVNNKSKIGQANESVNYVSSDFEVTFEDILLTLHCRNAQDAAKLFGVYLYHRGLLCSYEKGSNPKIVSVMSVDMNVKFNTWYHKKSDVSVEFIVEAIYTKMVCGYCKVFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JM55</accession>
    <name>A0A6S7JM55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A036505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018014">
        <property type="protein sequence ID" value="CAB4031961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JM55"/>
    <dbReference type="OrthoDB" id="5988934at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37445">
        <property type="entry name" value="PROTEIN CBG24663"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37445:SF3">
        <property type="entry name" value="ZINC FINGER PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="27433" checksum="62B6665CCB38675C" modified="2020-12-02" version="1">MPETGQKNVQTRSQARAPPNFEGDDMKEYIKSEVEKYFGSVAFQDSLREFITDSVKMACKNLVESIVVPIKDEIQALKTELIEVKRKCNDNEQYSRRSSVRIYGIPEGPKENCIKKVCDFFQKEMDLAFAEEDIDRTHRVGKKNRDGNRAMIVKFKAYDSKRSVMKVKKARLSNKTFSVYEDLTFLNRKLLYLARNEYKETPVWTIDGRVLVNMDGRVQPYVPTVNIYTWLQSPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQG0</accession>
    <name>A0A6S7JQG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067739</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019056">
        <property type="protein sequence ID" value="CAB4033221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQG0"/>
    <dbReference type="OrthoDB" id="8052050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="33857" checksum="7F3836A12BCD0C03" modified="2020-12-02" version="1">MAVRIVTLSQKALRVVRKLGTSPSNRARRENFWWYSWCFVKNAVLSRDKIPTSTKGNVLLLGDLNARRSKLEDFVSSDGSDHIQDTSDNSFQPPERQNFDSTINNLGKKIIEICKSTDMRILNGRINGDSLGRPTFHGNNGTSVVDYVICNQHLIPKVKHLVVKSPNYLSDHSQVITWINLYKNTNTDNIKTSQPPISKLPLQYIWNNESSKNFKKALKSEELQEKLSSFLDNDFSSDRESINKCVNEFQNIIDLASKKSLKIEKKKFRRKINNVANKKWFDKECRFKDTSLEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JR28</accession>
    <name>A0A6S7JR28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074620</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020773">
        <property type="protein sequence ID" value="CAB4035156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JR28"/>
    <dbReference type="OrthoDB" id="8041494at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17697" checksum="F6BD1D2C67ABDE23" modified="2020-12-02" version="1" fragment="single">NNYNLLLEKVIIDWDWFRKTIKNLIGGDKRITTFLKNQINTSKSIFPSPNHLFKQVDVFLKEKQVTQATGTYAHCRKNGYRKSYHGRDIFMSEPSEDGADYRVKLTDAYLKIRNPSLRHAGYLFNRLLSYGAAPKYIEAFSTLFSGYAVACSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JR69</accession>
    <name>A0A6S7JR69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019330">
        <property type="protein sequence ID" value="CAB4033528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JR69"/>
    <dbReference type="OrthoDB" id="289721at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15417" checksum="DF7D0E0708485A1A" modified="2020-12-02" version="1" fragment="single">MPDKIAPKAYRNMKEGYGLWKEGYVKRPLSNQMCKLQSCCSWFSFYLINRYQQTTVLGATSKQLPVTSGVPQGSILGPLLFLLYENHLSNAVTSSSIPTFADDTKIFKTINSISDAAAMQYDLSKFEEGSTNVNLELN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JWU4</accession>
    <name>A0A6S7JWU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056724</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022991">
        <property type="protein sequence ID" value="CAB4037365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JWU4"/>
    <dbReference type="OrthoDB" id="7477775at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13884" checksum="5315AA1FC25D090D" modified="2020-12-02" version="1" fragment="single">MDQHEEEIYYMQQYSRRDCVEIAGLPQQMGENTNDLVIKFGALIGLSLSETDISVSHRLPQSTGKESYSSRLRPRDGAASSSLNAANQFPKVIVKFTRREVKEAFYNGRKHLRDKTTQDIGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K180</accession>
    <name>A0A6S7K180_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022817">
        <property type="protein sequence ID" value="CAB4037188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K180"/>
    <dbReference type="OrthoDB" id="5987197at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18296" checksum="45286F4C20EFFA44" modified="2020-12-02" version="1">MTWTFSCLHAAVIKDENDDSLFSYQIYQCCAKCEFPNFSLCTLADYPNWQCGSEAYDCVFGCRDEDSVLEAVISASSLGMSRKRELNITDTQVTKVRKQLRLLRREKKCYERTCTVTNGVKDCCLKSTCVSLKSLTTKLGKAKKNREKLLKKLAKAKSTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K227</accession>
    <name>A0A6S7K227_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Metabotropic glutamate receptor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A001414</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011766">
        <property type="protein sequence ID" value="CAB4022021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K227"/>
    <dbReference type="OrthoDB" id="425344at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06350">
        <property type="entry name" value="PBP1_GPCR_family_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001828">
        <property type="entry name" value="ANF_lig-bd_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000337">
        <property type="entry name" value="GPCR_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050726">
        <property type="entry name" value="mGluR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24060">
        <property type="entry name" value="METABOTROPIC GLUTAMATE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01094">
        <property type="entry name" value="ANF_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00248">
        <property type="entry name" value="GPCRMGR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Receptor ligand binding region" evidence="7">
        <location>
            <begin position="1"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4022021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="234" mass="26286" checksum="07399D9CF0AEFF78" modified="2020-12-02" version="1">MLYALDTINADPAILPGIKLGSVIADTCSSEVIASKRTRKFIKIIFVPESTNYSELVSVVGPMYSRNAKFVANIVRVFHIPQISYGAMSHELSNKDIFNYFFRTVAPDGFFYAAMAAFLGRMGWRYVGLVHSEKVWNPLNAAQFVDKMRHKGICVGPQLHISPRTTDEHFDRYIEKLVSDDKEPKIVILVTSTRESRAMLAAKKRNARGNELMFVAGVTWSNRKTITKGDYGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K285</accession>
    <name>A0A6S7K285_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transient receptor potential cation channel subfamily A member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042198</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011780">
        <property type="protein sequence ID" value="CAB4022061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K285"/>
    <dbReference type="OrthoDB" id="6090131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="29449" checksum="C4C7347F6DE509CA" modified="2020-12-02" version="1">MYQSSYKTDGQNETVFFDNCQRRCYELTVTDNKCPFRVYQSERLHCLKLNVDEFRTKVPDFENTEILDDLETVLHSISNIKKQYVTNKSKAAILESTTTLGYQCHNLCRKITSYIPTLKSRIHEFTEAGPGVGVTNHDVKYRTAEVIMLTNPDYYIRHHLSNGDSSHNEVERIQSYVGDAICDGGPLEWEHQHQEGLTNEHIEQKKLAEIEDYELKRIEYNAFKVCDDLTCRIDEAPAPDGYMKAYTSQKNEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6F9</accession>
    <name>A0A6S7K6F9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022377</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023055">
        <property type="protein sequence ID" value="CAB4037410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6F9"/>
    <dbReference type="OrthoDB" id="5983959at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="37770" checksum="E454A3A39BB76B9E" modified="2020-12-02" version="1" fragment="single">ALERNIGTTNAAKCGQRVTPQFYPISRNLRTDMKNERRLTGSDITSLNKDQPLGDMDMVGAITKSSFTEQYQEDDVEIDSQPIDDHVENLANVDIQADIDSLIQSGGQVDRPAISQKIGGLVNKLRLQRVSQDQAKAIAKCHNTPENVQLRLPKCEPSIWNEIPGKARVTDIKFQSTQAALLGSINCQLEATNSLLSANVSKDVLNSCLDGITLAMTANYELNQRRRDAIRPQFKAEFAKGLCSTISPADEFLFGGDTAKRVKEMAEFNKHKVCKGSTSFRGRGARFHPYAMRVFRGGSMRGTVVEASVATVLSLILVFISARIFRMCPSTSERQATKSPLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K942</accession>
    <name>A0A6S7K942_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aerolysin-like C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A046698</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aerolysin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026071">
        <property type="protein sequence ID" value="CAB4039931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K942"/>
    <dbReference type="OrthoDB" id="5950738at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.412.10">
        <property type="entry name" value="Proaerolysin, chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055267">
        <property type="entry name" value="Aerolysin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053280">
        <property type="entry name" value="Aerolysin-like_pore-former"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34007">
        <property type="entry name" value="AEROLYSIN-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34007:SF1">
        <property type="entry name" value="AEROLYSIN-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01117">
        <property type="entry name" value="Aerolysin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56973">
        <property type="entry name" value="Aerolisin/ETX pore-forming domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aerolysin-like C-terminal" evidence="3">
        <location>
            <begin position="210"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4039931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="297" mass="34260" checksum="9AF8C2E472305089" modified="2020-12-02" version="1" fragment="single">EFLEKFDAEKSLNYWILTFKMLSLTLVFPLLFSSAMATSCSMANWWSSFDKKGYSTCSSQTQYINGLYRNDRRDDQIYLLEEVRCCGRTQPYYNQPTQCMAADWVTSLDNNNRWSTCSSGHFLQGLYRSDGNNLHNIEYGKCCKPANHPYWWGDCYDQDIRLSFDNKGTSKCNDGYYMTGLYRGGCDGLRCIEKIKCCKMYPSPPVLTTLSDVKTRVMDLTMGDLAYLAHYLGYGWCAGCRAQWVGEDFRRSGDSWHADKRPGSCRGYKSDQRLKLNYGDFKFSVKDIKYGDPVIQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDA9</accession>
    <name>A0A6S7KDA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081713</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026175">
        <property type="protein sequence ID" value="CAB4040020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDA9"/>
    <dbReference type="OrthoDB" id="8054395at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="60" mass="6677" checksum="5F697EB47A874EB9" modified="2020-12-02" version="1" fragment="single">MFQLAMRTRFLALKTNKVPDAEDEVPGAEDKVPYAEYKVHAGAEEKGPGAEDKIRDAEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDU0</accession>
    <name>A0A6S7KDU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Zinc finger MYM-type 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A028683</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028133">
        <property type="protein sequence ID" value="CAB4041321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDU0"/>
    <dbReference type="OrthoDB" id="5962488at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00397">
        <property type="entry name" value="DNA_BRE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021893">
        <property type="entry name" value="ZMYM2-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12012">
        <property type="entry name" value="DUF3504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0832">Ubl conjugation</keyword>
    <feature type="domain" description="QRICH1-like" evidence="6">
        <location>
            <begin position="14"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="ZMYM2-like/QRICH1 C-terminal" evidence="5">
        <location>
            <begin position="115"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4041321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="377" mass="43465" checksum="3E316EDC259D3317" modified="2020-12-02" version="1" fragment="single">MCESNPFSLDLQNLQNLETELCSMTARTLNFWLIKFVQEVCDKDGKPYPGRTIYQIICSLKRHLDENGRAEANMLNANMQSLTFRRVPDSEMKATHRESESLAENRTRREKEAITDDEEGLLWSKGLLGDKTAESLVYTIYFYIGKIFGLRACEHRQLRLSNFVIENNKICYRENISKTFHGGLKDLKKKPRIVTHHCHEVEESVHEPCLVQMFKQYISLVSELPKINESFYFRPSKITYKFENAPIGIHKLNSIMPFLMKEAGLEIKIAHCLRVTTATNLFRAGHQEKLIRERTGHISSALFTYEKPSNDQAMAVSKCVGPSVSKVVSLADNCFKPPSKPKEDEKFQISDEELDTFLSEVDWSKIDKEVQRRTIAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KSH6</accession>
    <name>A0A6S7KSH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016047</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042232">
        <property type="protein sequence ID" value="CAB4045824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KSH6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12271" checksum="699D9D179004A592" modified="2020-12-02" version="1" fragment="single">LILHSEIEARDVNVREVIEDFRGQVDSYTDIFEAVVLMAPGRYRVTFKSARKLEVAENFGFTVRGFPLTFKPVSLFKWVNITRVSYGVPDEEISKVLSVYGPIKMIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L4J5</accession>
    <name>A0A6S7L4J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014771">
        <property type="protein sequence ID" value="CAB4027389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L4J5"/>
    <dbReference type="OrthoDB" id="5987279at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031248">
        <property type="entry name" value="RNF213"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605:SF16">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE RNF213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22605">
        <property type="entry name" value="RZ-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="30087" checksum="55C44FE6F9EBA7B9" modified="2020-12-02" version="1" fragment="single">MEKFHSEEYQRTFQYLTQFENGSNLDKFSFIYKPSVIIGEDDLKASVEALKIIIKYCGIRDSSWAELHHFVNFLNIQLRDCEESVFCDPVLVGDLLQGFRTFAVRFMIQMSRDFATRSLSDNILGVEDASRPEEDDDLTPFKIRRRWESSPHPYIFFNHDRNSMTFLGFLLSKKGDLLDPGTNSILEQRLMEPTLRDQLKHQGVDFDVNYEKRDRMARIANLCSVMGMIQIPDYDPDPTYELTTDNVKKILAIHMRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L8K5</accession>
    <name>A0A6S7L8K5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036848</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015756">
        <property type="protein sequence ID" value="CAB4028829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L8K5"/>
    <dbReference type="OrthoDB" id="5951206at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="674" mass="77119" checksum="6F47333DBCD8770E" modified="2020-12-02" version="1">MGKNCLPVYFRGECNIGNGSTCNCDIIMLGYKEKCDEAKNGKLEHVEYIHRYGTTWNSGRNYLYEHAMKRKTAYLYYIFVDEDASMRPNVDSNVNVTSLGLWRSFENFLVEYEPAVGITAYCHGKSNRCKWQRNKPGGNGVYVLSGWLFDACFNAFHHDALPYLLPYNLKNENKSWIYSQHYVATLAKHYFSGSVLIYGNVNIVNGGHREYPRTSDPERFKEQDLVISKYVDLITKSRKKPEWKNRINVSETMDKHFCKCYKRITVLAPIVHDIITASIKQCKYPSHYKHGLVTPVPKAYPPTDISDDFRQISVLPHIGKILERVQLQLNQNDITLRSSQHGFTSGRSTTSALISITQPWFNATDNTCRDKAGIHALFIDFKKTFDLVDHGILLNKLALMNVNKSFWLWVKSFLCGRTQQVKINQTLSSIEGCPAGVPQGSALSPTLFNIHIDNLDTSVPEDLEVSTYKYADDCTQSECIMKGECSNMQKVLDSVQNWSNANKMKLNAKKTKDMWICFGKSIPQPPNLYIGDVMIERVNTFKLLGASCQSNMKWNSHIKEITRKGNRRLCHLRQCRKAHLPTEVGLATYCTKIRPLLEYAAPVWGGLPHYLVNDLERIQRRSLRIIGLPVDTLPPLSERRDKLTLRKMEAITQDVNHPCHHLVPIAHAEARLFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LF31</accession>
    <name>A0A6S7LF31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ATP-dependent RNA helicase DEAH12, chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A069722</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the DEAD box helicase family. DEAH subfamily. PRP16 sub-subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021581">
        <property type="protein sequence ID" value="CAB4035982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LF31"/>
    <dbReference type="OrthoDB" id="6144055at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034458">
        <property type="term" value="F:3'-5' RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18791">
        <property type="entry name" value="SF2_C_RHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1080">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011709">
        <property type="entry name" value="DEAD-box_helicase_OB_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007502">
        <property type="entry name" value="Helicase-assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934:SF91">
        <property type="entry name" value="PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21010">
        <property type="entry name" value="HA2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07717">
        <property type="entry name" value="OB_NTP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00847">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00038040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4035982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="821" mass="92408" checksum="B1372D6A11B28614" modified="2020-12-02" version="1" fragment="single">VFDAPPEGKRKIVVATNSAETSLTINGIRIVIDSGMVKEPSFDPDRNMTTLDVKLVSQSSAKQRTGRAGRTGPGKCYCMYTEEDYNNMDSSTKPEILKMHLGMAVLQLLSLGVTDIEQFDFVESPPPSALTKALESLRLLGALNPDGTLNHLGEEMLQLPTEPQLSKALLEGLDRGCGDDVIIAAALMSSGHDVFYRGTVEKRNECAIQKQEFCQTSGDLLSAIDVYKEWFKVSSKTQVAWCKKNALNSKLLRSARETGNEIRDALSKIRPRLNLQVTAENIQESLSKSLLAGYFENIAWSFGHEKLGYMTVSSNQKAIIHPSSVLSSLGDQPEWVLYQQLKRTNQVFLLNLTPIRYDWLAEVAMHMLQYIDEETIARSRVVRHRIYPIGPELVKAVIGCKGSTIKQIETSVSEYSAIIDGHTAFCAVECNVDKGMVDVYTTKDCLNYASNQVNDVIQKKRRELEGYSEVFISNVGGLKTLVANDLTTRLILQPGTSCKFDVFVEKEDVSEEVNSDEVLDILRDAGNVIHYAACTNPMSGPNFRWGDVTYSDVSQTKKANTHLHSVRNRDELPYNVRRIQLKPTHVESTASQNYTQPSGVKVLVSWFLLPAREKAYIKCKSRDIADEIVYNLNQQMTTSFSKRSFVQKSGGDIAVFVQETDDEFTVRKQLEGCCTTSQVEGVSKITVPSNELYEVDLQAEKEKLMEVMKDFETVQILKLWFANCKKVRACVVFEKFESAQDVILKLNERRDVLGVRAMYLELESKREITCDGRLYDKIRKEIEALKNDEIIIEVEPRQRRKKIIITGEDPQVSCTCLYVKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LGY9</accession>
    <name>A0A6S7LGY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027244</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022892">
        <property type="protein sequence ID" value="CAB4037263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LGY9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="9367" checksum="F4EC49CE92E987F0" modified="2020-12-02" version="1" fragment="single">GVGGHIGDSTNYHFDSRGSGDRPTFKYRLGSSSKKRSLIGKLYLAQEDYPESLSDENPPEVFPAPPAVTIAPSKYKANIKQEKVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LH61</accession>
    <name>A0A6S7LH61_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000080</name>
        <name evidence="2" type="ORF">PACLA_8A004628</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011993">
        <property type="protein sequence ID" value="CAB4022466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020022204">
        <property type="protein sequence ID" value="CAB4036592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LH61"/>
    <dbReference type="OrthoDB" id="6020287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4036592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="70" mass="8239" checksum="A4EBEEC9FB6E97A4" modified="2020-12-02" version="1" fragment="single">MPDSLKYSTPSLYADDTEIYLSSKDCDDIVIKINLDLENIRKWMQQNKLQIHPTKSKYMFIGSAYNIKHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LKL7</accession>
    <name>A0A6S7LKL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035182</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019519">
        <property type="protein sequence ID" value="CAB4033749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LKL7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="211" mass="24704" checksum="76E0F00BD07BFCF7" modified="2020-12-02" version="1">MWLRDGKGNLYKKYKEECIKEGRKPKSESKFHDGLNAGNFKEMVRMTGLCNICDDVGAKNWDRFFELIEMLRKETCGKTPSTDTMDTLEDDELDHKNVDKTKVRIIYITDEDSEYKQHNSLPADSPVLMIEVNEHVSNLHDFEKRCKILKGHLLLKFLSDLQPHSSCPFPLLDLLLNENLCGKDHHEICQECLHRIMLFDNHQRKYPQPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRU5</accession>
    <name>A0A6S7LRU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A031177</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029066">
        <property type="protein sequence ID" value="CAB4041873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRU5"/>
    <dbReference type="OrthoDB" id="5952087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="entry name" value="DnaJ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051434">
        <property type="entry name" value="DnaJ_C_subfamily_member5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44027">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44027:SF7">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="Chaperone J-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0564">Palmitate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4041873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="443" mass="48144" checksum="FD1EF56B737727E4" modified="2020-12-02" version="1" fragment="single">MASASVPDPEYKAILVRNETKNATVFLFIYAQMDPICWLDLKKESIEPGKQYFYRDRDSFKYELRMQQKEPKKGKRTIVLPVQKWTADKLISVKGDENESRIVKEKTLSEYPNERQIAVRRKNMEEETTWEYGRDLYGILKLDMKEVRKMRIEEQDEAITKAYRRQMLIFHPDRNPELADSQICREIIMAHGVLRDRKKRAVYHDLTDYSGGWLSKSRWKAIFTPEAHGSTEKWKRIGLLTFSLVMVAGGVAITVCTAGLGFPAFIGCNIASGALIGGAIQGAFRVASYDSIQNGVKCKSYAKSFAVGAGLGAVAGGACAGITSAIIGIESTVTSIAEAGAGELVGSGAATGGVNGALSSISSDVDSYIVDGESRSPLDVAKRALKGAIVGSGVGMVCSGFAKAEAKIKTVGKIKVEAIKQKMSGAAECVEHNANPALVSNMC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSZ9</accession>
    <name>A0A6S7LSZ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087067</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032616">
        <property type="protein sequence ID" value="CAB4043552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSZ9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="97" mass="11656" checksum="F0BF5C249805425C" modified="2020-12-02" version="1" fragment="single">TKLEAAEDEVAELKRKLRKTNEDYRQKINVEKKDKSHSTTSPPRPTPKQRNKNGSLKKRISFHEDIVREDKQEDLFSRKEDDAARVLQRNWKKYNYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LV54</accession>
    <name>A0A6S7LV54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042190">
        <property type="protein sequence ID" value="CAB4045822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LV54"/>
    <dbReference type="OrthoDB" id="129606at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="74" mass="7686" checksum="9560089529903D7B" modified="2020-12-02" version="1" fragment="single">MVSSREHKVAAGEDKFPASENKDPGGEDKVPGDEDKVPGGEDKVSDGEDNVSGGEEKVTGGEDKDRGCENKVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LWB7</accession>
    <name>A0A6S7LWB7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UBE2O-like SH3-B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021764</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020045609">
        <property type="protein sequence ID" value="CAB4046089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LWB7"/>
    <dbReference type="OrthoDB" id="6007253at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057733">
        <property type="entry name" value="UBE2O-like_SH3-B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23043">
        <property type="entry name" value="SH3-B_UBE2O"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UBE2O-like SH3-B" evidence="1">
        <location>
            <begin position="47"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="10262" checksum="B8208B368FAB9B8A" modified="2020-12-02" version="1" fragment="single">MMYPEPSDLDNPSFYLCVDFKNPELVKEVHVPVYPQPEDTICVLGAENQEWFALVQQVDNEERTAVVKWYSETRRPGIWILMNQEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5Z0</accession>
    <name>A0A7D9D5Z0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000038">
        <property type="protein sequence ID" value="CAB3977228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5Z0"/>
    <dbReference type="OrthoDB" id="5986954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="33254" checksum="1B09E90D879EF995" modified="2020-12-02" version="1">MNPDEISNSINAALLEPLQSYTPLDSVLIWFNSLLVLENDTFNALRLASDVTPKGGVKTFVMRQCILCMQNHPLASCQKFKEMKLKDRIDFVRKKELCFGCLGMGHFSNRCLARKKCDVCQLKHPTHGCNEDTTSSMILPVWLYHQEDPDHQIMVYALLDPASNGTFIKTETLNKLGRKGVDINLRLNTMHSREIITTQKITGLKVEDLERTTQIELPMAVYCRSDIPSRRSEIPHPEMANKWDHLCELTTKLPRYQERIEIGLLIGSNCPKAIKPQDVIRMQLELFLVGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6J8</accession>
    <name>A0A7D9D6J8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphodiesterase</fullName>
            <ecNumber evidence="5">3.1.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A071742</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="5">Binds 2 divalent metal cations per subunit. Site 1 may preferentially bind zinc ions, while site 2 has a preference for magnesium and/or manganese ions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the cyclic nucleotide phosphodiesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.-" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020000095">
        <property type="protein sequence ID" value="CAB3978198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6J8"/>
    <dbReference type="OrthoDB" id="6017640at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004114">
        <property type="term" value="F:3',5'-cyclic-nucleotide phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.1300.10:FF:000003">
        <property type="entry name" value="Phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1300.10">
        <property type="entry name" value="3'5'-cyclic nucleotide phosphodiesterase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023088">
        <property type="entry name" value="PDEase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002073">
        <property type="entry name" value="PDEase_catalytic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036971">
        <property type="entry name" value="PDEase_catalytic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023174">
        <property type="entry name" value="PDEase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11347">
        <property type="entry name" value="CYCLIC NUCLEOTIDE PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00233">
        <property type="entry name" value="PDEase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00387">
        <property type="entry name" value="PDIESTERASE1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55781">
        <property type="entry name" value="GAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00126">
        <property type="entry name" value="PDEASE_I_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51845">
        <property type="entry name" value="PDEASE_I_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0140">cGMP</keyword>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3978198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="459" mass="52544" checksum="0AFEFF3349D9E513" modified="2020-12-02" version="1" fragment="single">SRAEVRFPVNIGITGHVATTGQTLNIPDAYADPRFDPDVDETSGFKTKTVLCMPIHNSTGEILGVVQLLNKMDNTPFNANDENLFQAFAIFCGMAIHNTSVYEDVQKAMAKQRVAFEILSYHATASPEETTKLMKMEDSPKISRSLLDFGFDDDTLDELSTCYATLNMFYELDLHSRFAIEKDVLCRWIMSVKKNYRQVTYHNWRHAFNVGQTMFAIIKNSAVRCYFSDIERLALLVACLCHDLDHRGTSNSFQVKIDSPLARLYSTSTMEHHHFDHCTMILHSQGNEIFGGLTTNEYEAAYTMLELCILATDLALYFKNRNTFFELTKSSTTDWHEKENQHLLSAMMMTACDVSAISKPWAVQRRVAKLVSEEFFLQGDLEMEEFKEQPAAMMDRGKKDKLPEMQIGFIDGICLPVYKAFALLCPNMQPMLDGVLDNRRHWQELADTQKRKMQENQRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJ22</accession>
    <name>A0A7D9DJ22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000929">
        <property type="protein sequence ID" value="CAB3985829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJ22"/>
    <dbReference type="OrthoDB" id="6422898at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24644" checksum="B07B7850DC6287CC" modified="2020-12-02" version="1">MIETLNTYVEEYDVHFKLMQGGRVGVSIHMQQQFIYRYQDNDDIREILYDIKNDNDISFELTKQLKYMLGLGSWVLHPTVEKYALQTPTGYTQLQVLMAFVYMLYSSSGLPYDPAMTTFYGKWVPDMTNGITRIFIYCDEVNHSVVGDTKSQLLGTLNIQWGEMGSGKIFTHTMPPITRDLIKSKIAQLHIKLCDIENNLIQFSAGTVGIECVVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJZ8</accession>
    <name>A0A7D9DJZ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001232">
        <property type="protein sequence ID" value="CAB3987774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJZ8"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="30344" checksum="63B2BCD9EE971FA3" modified="2020-12-02" version="1">MKDYLISSLEILEINYPNCAIVLAGDFNKTRLPLLQSAVKVFQLKPVVDFPARGDRTLDQIFTNLTEYFSSPCSLPALGLSDHQTMFILARIRDKTCKPKPKLITTRDKRPSKIASLRRFLQQLPWFDFFSPAQSSEDKINILTDIIHFGLNTIMPVSTIKIHESDRPWMNTNLKQLISRRQKAFTTGNNPLYKILRNKLNQACKRCRKSYYVNKVNGLRDSKPRDWWKEVKLNSFAAPNKTLSVIRNLWLKTSIWRLSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DW21</accession>
    <name>A0A7D9DW21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cytochrome b5 reductase 4 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A039021</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the cytochrome b5 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002398">
        <property type="protein sequence ID" value="CAB3994136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DW21"/>
    <dbReference type="OrthoDB" id="432299at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004128">
        <property type="term" value="F:cytochrome-b5 reductase activity, acting on NAD(P)H"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06183">
        <property type="entry name" value="cyt_b5_reduct_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.120.10:FF:000001">
        <property type="entry name" value="Cytochrome b5 reductase 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.80:FF:000021">
        <property type="entry name" value="Cytochrome b5 reductase 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.120.10">
        <property type="entry name" value="Cytochrome b5-like heme/steroid binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="entry name" value="Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001199">
        <property type="entry name" value="Cyt_B5-like_heme/steroid-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036400">
        <property type="entry name" value="Cyt_B5-like_heme/steroid_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018506">
        <property type="entry name" value="Cyt_B5_heme-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051872">
        <property type="entry name" value="Cytochrome_b5/Flavoprotein_Rdt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001709">
        <property type="entry name" value="Flavoprot_Pyr_Nucl_cyt_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46237:SF1">
        <property type="entry name" value="CYTOCHROME B5 REDUCTASE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46237">
        <property type="entry name" value="CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00173">
        <property type="entry name" value="Cyt-b5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00406">
        <property type="entry name" value="CYTB5RDTASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00363">
        <property type="entry name" value="CYTOCHROMEB5"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00371">
        <property type="entry name" value="FPNCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM01117">
        <property type="entry name" value="Cyt-b5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55856">
        <property type="entry name" value="Cytochrome b5-like heme/steroid binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="Ferredoxin reductase-like, C-terminal NADP-linked domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="Riboflavin synthase domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00191">
        <property type="entry name" value="CYTOCHROME_B5_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50255">
        <property type="entry name" value="CYTOCHROME_B5_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 9" id="KW-0349">Heme</keyword>
    <keyword evidence="8 9" id="KW-0408">Iron</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU362121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3994136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="416" mass="46489" checksum="5D6F8689E6F8779D" modified="2020-12-02" version="1">MADSFPSVGSPQRLGSPRSKVSLKPGRSLMDWIRLGNSGKDLQGFGGKFRKVSTAELAEHNSIDDVWICLRGCVYNITPYLEYHPGGIPEIMKGAGIDATQLFNEIHQWVNAESMLQKCLVGPLVQTPKEKKKSGTGSYKSSLSLLAPPIPLVVKSKDDTDSNEDSLYWRCEVKSIVEVTHNVKMFCFTLPNGLVMDAPVGHHVHFQRTISGIDISRPYTIVVPSFDFKNGEETKRHLYLIIKIYPSGTLTPSLLDVNIGDHCLLTGYSGNFQSSRLTEAKDIIMIAGGTGLTPMIRIIHSFIHQQLSSVRTIKLLFANREEKDIIWRDNLDQLQKEIPEKFQIYYFLSSPPESWSGHTGRITESFLKELLPPSPQSGCEKDLLICVCGPDPFTLQQLKFLKSLGYNNKSTHAFFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DWE1</accession>
    <name>A0A7D9DWE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Neural cell adhesion molecule 1-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A016952</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002451">
        <property type="protein sequence ID" value="CAB3994388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DWE1"/>
    <dbReference type="OrthoDB" id="8825892at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.10:FF:000032">
        <property type="entry name" value="palladin isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050958">
        <property type="entry name" value="Cell_Adh-Cytoskel_Orgn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080">
        <property type="entry name" value="CONTACTIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45080:SF8">
        <property type="entry name" value="IG-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13895">
        <property type="entry name" value="Ig_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3994388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="35169" checksum="36B4A2E92D0A0893" modified="2020-12-02" version="1">MECVRMYYILLSLLIVAIKDKVSGDAVDIKFEGIEPQTVLVGDNVTFRWRYTGSQKSLLTQFNVLEDSGSKTQLIYYAFGLDGKPELYPAVIEKYATMANWTGDISKKEFAFTLMEVKEFSHKKNFSLHIEHDGNIREDAYTTLFISVPPEAQLLAEKTTNVSVGDRVTIQCTVKGRPPPKISWYHDNTLVPGKNGRYLFNQKEIELKDAGSYRCDANNNAGENKSEVIRIAVHKKPGEGDKDKDNPIVGKSSGGLGGGAIAGIVIAIIVIVIVLIVVVVWMKKRSGRSSKKTPTVNDDEGKSPMVSNPPEKDQVWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXD5</accession>
    <name>A0A7D9DXD5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079413</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002677">
        <property type="protein sequence ID" value="CAB3995511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXD5"/>
    <dbReference type="OrthoDB" id="118105at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599:SF3">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="114"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="701" mass="79393" checksum="7721F5D4B00903AB" modified="2020-12-02" version="1">MVAESNEHDCPTANCLAKKQGTIIPPQPTQRDTPHVPKALPADMPLVGISSKSRVFRTQLQESSKTLGDQGQKSNMLATLRDGYATVVKGILIPFVLINLDSPYSEDITVGPSEEAETYHKGGDHDGNQRELSSSRSSGKGAGKRRMVPQGNGGVSRKKSRLGRVGVGRVTMVTKGYDNVDIPHELPPFTPSRPTGIHLENHLEDGMATELDFFNLFFTKDMIDSIVTHTNACAYIKLAEGGYLTYANGQGAWDETNAEEIRCFIALLIYFGLVKLDVVEKYWSTKSLYHGLWARKILSRQRFKALMTFLHIADPASENPEDTVCNIESFVKLFKNQCKSLYQPTQNMTVEERMVGSGDKPGIYRRYRRADTTTRSGIKLWVLGDTSNGFIVDFNIYIGKSAYGEVSENGLGYDLVMKLATPYLNQGYHLYLQKCFTSFKLVSDLFSNGTPSTGVVSVGKVGFPTSLSDVKEWARTVEFGDMRWERLSNILTLQWLDHQPISILTTIDSANEVALLHRKVKRDNKLEKIDVNVPKVIQKYNQCINKVHRYDHTVMSNNVLQKCYKWWKTLLFHLIDMSVINSFILFQEQRRNNPDNNGLERGEKYYSIVEFREALVRQICGLADYDVPPSYVSVKAVHEYETIHIPKVANVRRVCRLCYKAGRGQLKVSTYCSAPQCQNFLHIQSDKNCFEVWHTKEYHQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E3L3</accession>
    <name>A0A7D9E3L3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024787</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003697">
        <property type="protein sequence ID" value="CAB3999892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E3L3"/>
    <dbReference type="OrthoDB" id="2155711at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="161"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="306" mass="34436" checksum="A7707EB17DABBA1B" modified="2020-12-02" version="1">MKYSGTFLLKFKNYQCFNNDIWQRIGYLGIRKKYRGKRSGKNKHCIAVTITSRNTRLLDHRNRRFHNPSNCVIPKLLNCGKTYDLPNFLVLNARSVAGKGDELHCINDQHEFQIICIAESWLSEAIPKEAIALCDYDIIRCDRTGEKGGGVALLRVFIGLRRYRRLMFGINGASKIFQNTTAELLAGLPGCKNISDDIIVYGKDQLEHDLNLQAVLQCLSDYNVRLNKDKCHFSHSQVCFYGHIFSAKGVQADPAKIDSIQQARAPQNVSEVKSLLGLSQYDSSPITLPSLLHFVLSLELTPSGNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E711</accession>
    <name>A0A7D9E711_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004563">
        <property type="protein sequence ID" value="CAB4003198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E711"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18852" checksum="C115D237C7569D62" modified="2020-12-02" version="1">MKSFLRQDLYNIIDLEGNRVDKTDERCNSIMGDSLNIFESNTSTEKPDYGTEQGGDSYLLFQSQYNSPIEVYLNEDVVIPARTEVTIDVKSLKLENEELKIQVNMLRKEFKNLEATLERCIAQSNDTKDVHSSISNETNKSLDFLSNGYELSSFRREAKKSLFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EA36</accession>
    <name>A0A7D9EA36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Forkhead box C2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A084875</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005148">
        <property type="protein sequence ID" value="CAB4005275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EA36"/>
    <dbReference type="OrthoDB" id="5954824at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009653">
        <property type="term" value="P:anatomical structure morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000016">
        <property type="entry name" value="Forkhead box protein I1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001766">
        <property type="entry name" value="Fork_head_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050211">
        <property type="entry name" value="FOX_domain-containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030456">
        <property type="entry name" value="TF_fork_head_CS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11829:SF388">
        <property type="entry name" value="FORK HEAD DOMAIN-CONTAINING PROTEIN L1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11829">
        <property type="entry name" value="FORKHEAD BOX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00250">
        <property type="entry name" value="Forkhead"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00053">
        <property type="entry name" value="FORKHEAD"/>
    </dbReference>
    <dbReference type="SMART" id="SM00339">
        <property type="entry name" value="FH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00658">
        <property type="entry name" value="FORK_HEAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50039">
        <property type="entry name" value="FORK_HEAD_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="DNA-binding region" description="Fork-head" evidence="6">
        <location>
            <begin position="70"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="164"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="250"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="178"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="268"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4005275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="451" mass="52150" checksum="7B5831A67D249C12" modified="2020-12-02" version="1">MANYQLHGQGQDTGAFSNPTMANQVDFNCRTSRHNCSAIHYSYFPYVPTQPQEYFWSPCKCIGANEDKVKPPYSYIALIAMAVENQPDKKITLNGIYQFIIERFPYYRKNRHGWQNSIRHNLSLNDCFVKVPRDDKKAGKGSYWSLDPDSYNMFENGSYLRRRKRFKKKKESREDSESSFGETSRSSSQERDTSPQGQTHDNIASWPPTTHERTSVINTNIPSGYFPLNLEHQVEQVNDPFRRQEEFPFQTEQRNDVSPCESRFPPQCSRTDQTIPAHNITSPNNPNLTDSNWRGYQSQQNPNYRPIHNPTLNFNSNHGKDKPRLFSGYPAVAEEMYSNPQISSPLNPARSAPCNVPARTAPYYEEDMNRHPKQYTERYVRNHANNFQPPFPSEYTTFEENQRCLAREGQNVSKVCSSNEGQWNGFTPPRTEHTGTNIFTARPPFGNCSWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGR9</accession>
    <name>A0A7D9EGR9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110045991</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078774</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006664">
        <property type="protein sequence ID" value="CAB4010063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGR9"/>
    <dbReference type="OrthoDB" id="5947805at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052925">
        <property type="entry name" value="Phage_Integrase-like_Recomb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605:SF3">
        <property type="entry name" value="P CELL-TYPE AGGLUTINATION PROTEIN MAP4-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34605">
        <property type="entry name" value="PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21338" checksum="8AE70A790D0508D2" modified="2020-12-02" version="1">MLWAAFTLAFFGFLRCSEFTCNSPFDPEYHLSRTGIIFYPNILNAEQFDVIIKRSKTDPFRRGCRLTIGSSLNEFCPVRAMKNYLLQTPSIPESRPLFQFESGAPLTRATLTSHLRSLLQQQGLDETLYASHSFRIGAATAAGSAGLPTWLIKTLGRWSSDCYERYIRTPRDVLVSVTSKLIANTNQKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIS6</accession>
    <name>A0A7D9EIS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transient receptor potential cation channel subfamily A member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007140">
        <property type="protein sequence ID" value="CAB4011421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EIS6"/>
    <dbReference type="OrthoDB" id="6090131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.720.30">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036361">
        <property type="entry name" value="SAP_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68906">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="188"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="30257" checksum="167302EB46E0EF03" modified="2020-12-02" version="1">MEFIKCACDGEKDGCESCISWTGLPAKRVPQPVPDPERACHYLPVADTPLCTENDTPRPVDDWQPRANITKLFQDGEISLQQQDEITTFSETFYVIREYVVASIEHLTNLQSTKQIRSRGRAEEQRHRKERKYDEYDWINLVLQGELSKLTIPELDKYITENKLNKKGKKKDKLDAITADVLRKHQGRPIEDVLEPQHRDQASSESDSDQDIVLEEFGSESDPESETEDEPENEQIQTVDPVPLVVQTRYGRYAGNWALSELH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJA1</accession>
    <name>A0A7D9EJA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007288">
        <property type="protein sequence ID" value="CAB4011852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJA1"/>
    <dbReference type="OrthoDB" id="6512834at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18728" checksum="C440C3E51A58E166" modified="2020-12-02" version="1">MAESRNLASKEAKNLLNLLELNEMDDDDIVDISAEDQAFVATCLLLFLLERKPKTESFLYQFGDAREIALATRPGMAPFLVIGGTCQNSQPHETSVVAENHVVFKHLGLLDAVESMMLLYYVCTLEYPKECFNTFLFLQRQVLKVYDTQKIPTKVLVLMSDIDKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EJN6</accession>
    <name>A0A7D9EJN6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A006586</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006838">
        <property type="protein sequence ID" value="CAB4010585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EJN6"/>
    <dbReference type="OrthoDB" id="5975513at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00198">
        <property type="entry name" value="vWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056475">
        <property type="entry name" value="GBD_Hemicentin/VWA7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056861">
        <property type="entry name" value="HMCN1-like_VWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052577">
        <property type="entry name" value="VWA7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14905">
        <property type="entry name" value="NG37"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14905:SF7">
        <property type="entry name" value="VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23560">
        <property type="entry name" value="GBD_Hemicentin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25106">
        <property type="entry name" value="VWA_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Hemicentin-1-like von Willebrand factor A" evidence="6">
        <location>
            <begin position="208"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="domain" description="Hemicentin/VWA7 galactose-binding" evidence="5">
        <location>
            <begin position="407"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF25106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4010585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="9">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="716" mass="78385" checksum="6C51BAADE0B05DDF" modified="2020-12-02" version="1">MSMKAAITILLFYHAMQVVSSAFDLYGSMDDARSAIMSFYDPTHVEPEAKPVKPGSIKVKSKRPTFVISTRKIRLPFPRPQPTRAINKSKPVTTRRVSLNKFVEAIEDIEKALADAQIVGRVKHDEQRLRKLRDLIKTAVQKRSYRFARKAIGEAMFTIRKINEKRKAGGRGKRNTVLSSKDFLGSVRQTIGVSAFNDLLAMQGQVTLMFAIDDTGSMAQEIAAAKKIATSIVDEQRAEPVDYILSPFNDPGTGPVTYCEETERDRFVTAIDSLSPHSGGDCAELTFKGMNDAIDEGPQPDSPLYVFTDAGPKDATEENILYLKEIAQAQGVVINFFVVQNSGCARTADISSFEEIAQATMGQVFELKDHNELEQLQGLTATSLGGTAVVVNAIHNQAARKKRSLSKTPNSYSIPVDDSIDTLVISVTADQPTTGGSMWSVSLTSPTGNIAGVTTNNLDQGTVYQISKPNVGVWNLGVTADSSVNYDLFVKGSSADNIDFEYYFVRTTVRRGVSTTIPITSPLLGEKAEAILTLGGIAHVDRRTLTAELVTLEGDVIVTSQPVSLTSKDRKGIRHSFKFYPPNQIFKIKLKGRTKKGNPFERICHAPIKPETLLVKVLFARNDYTIKQGSTGYVIFMIENFGNAEVVDINSFGSMGTVQRQSRSMSRVRKGRKTSFSVTFRGNSKATKGMTVTIVVSVKGRNSGSKSVMSVPLLVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EL69</accession>
    <name>A0A7D9EL69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007249">
        <property type="protein sequence ID" value="CAB4011729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EL69"/>
    <dbReference type="OrthoDB" id="5957142at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="18345" checksum="5675616CB2AD5175" modified="2020-12-02" version="1">MVYRVDFEADNPDLSCFQDATLQEIRAAVLTDPEKIEVQALVESGWPAQKVSVLVPAQQYCPTPFWRVLRSNLPQPSSTLLPSTPPHDIVVKDQTERKSQQKRAYDKRAGPPLPHLLPETKVFAKPPPTSSAKAWIPGKVIGSAGPRSYIINTGASHIRRNRTQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ERT4</accession>
    <name>A0A7D9ERT4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DDE Tnp4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A076788</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008460">
        <property type="protein sequence ID" value="CAB4014818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ERT4"/>
    <dbReference type="OrthoDB" id="10051515at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE Tnp4" evidence="3">
        <location>
            <begin position="16"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4014818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18841" checksum="106C9C0834E67AB7" modified="2020-12-02" version="1">MFIPQPSLVNNKVLPYTLVGDEIFPFKTRLMKPYPGKGLSESQNVFNYRLSRCRRTIENAFGIYAARWRIFRHPIRASISTVDAIVKATLCLHNYLCMTENAQYIPTGFVDCDSSLDMKEGEWRNIVRGGANSGFQNISRIESPNYSIDAKTTRDNFCNERQLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESI3</accession>
    <name>A0A7D9ESI3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FK506-binding protein 15-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082742</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008668">
        <property type="protein sequence ID" value="CAB4015315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESI3"/>
    <dbReference type="OrthoDB" id="77911at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056598">
        <property type="entry name" value="FKBP-15_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44927">
        <property type="entry name" value="FK506-BINDING PROTEIN 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44927:SF1">
        <property type="entry name" value="FK506-BINDING PROTEIN 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23649">
        <property type="entry name" value="FKBP15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FK506-binding protein 15-like" evidence="2">
        <location>
            <begin position="2"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="111"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="181"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="282"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="354"/>
            <end position="785"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="130"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="358"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="383"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="411"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="448"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="487"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="585"/>
            <end position="594"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="646"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="684"/>
            <end position="706"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="733"/>
            <end position="742"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="772"/>
            <end position="785"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4015315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="785" mass="88753" checksum="48A9512C812C0B1B" modified="2020-12-02" version="1">METELELLRKQDAENRELLKKTSSQLHKNKTELGTTKENLTEREEEVQRLSSSLKNLKQERKKLEGNFTSLEETVSDLKQENESLEKNLADRKKKHAEVKKRMDEEIEELKSAHEEELNSLKERHRRELTSSSSSLSQQISELESEMETKWQEKSKQMVHQCEKKWQRKYDDVVEESETMKKKLTENEEKHSTMKTSQTRHLQEIEDLQEKLKDLDETRNKYMSMKNSQGEQQQEMDDLREKVKDMENTQRKYQDLRMKSIEMKEKYEQRLQELVKEKEIAVQEAQQKSSEEKQEAAVQQQASEPSRDKIVNEVKQIMNKVFFKIREEFVTGDNYKGSAIISVVLNVIKTMTLKLTSGEDEESEEEDESGDEDESGSEKQEEGEISEEDESEEDGDESEKEDGDEGEKEEIENGKVEEKESGEEEKEKNENVEVREDVKDESEKAEVEESGGDGSGGDEEGSGGDLSEKEDESGEEEGKNVTGNERQEDEVKDEEEEQKADVNESDVINDEDENGQMEGRDERMAEDDTSENKTESTSIGSDGQEEGVVMDSEGPARVTEDISPLHPAKYSDSEDEDPGVTEGPPPRDPEDTGDHLGIVEQYGGGLSLTVGNNGSSEEDLETISNRPVLGSEHTSISSDEENDGNTVDRNDQDKDSQGPLVSDLPNVDELSGTSKDIEGGGSEGESKEVDGEVENTRENENDKVENGEAVTSEVEVAAEEKEEKKVQSLSDFLSDDEDDVEGLFDTPAPKTISTPAKKDEGPPLKGIPPPLFDDDDDDDDLDWFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HKV0</accession>
    <name>A0A7D9HKV0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087138</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000825">
        <property type="protein sequence ID" value="CAB3985087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HKV0"/>
    <dbReference type="OrthoDB" id="5990019at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22637" checksum="B7A8562C3CDCAD2C" modified="2020-12-02" version="1" fragment="single">MKVLFSEPSAQNESDDASVRNACHHKIFNFFCKNFTTVDEAEKHFNIKYFDDHFPLVVCSKSTPKSGQVCACPSSVNLSPIFEHSPTTEKVVVSDTNGHAIKSVIALVGQLSSMQEEQLLSRLLFQYIGEDLENNIIHQMMNFQLQLPMKQYIGEQARKCAKACFTKNKICIHVWDNVNCTTLSVNPCQMPCFGHFILLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HN54</accession>
    <name>A0A7D9HN54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exonuclease R569</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001027">
        <property type="protein sequence ID" value="CAB3986520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HN54"/>
    <dbReference type="OrthoDB" id="5976735at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049012">
        <property type="entry name" value="Mutator_transp_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20700">
        <property type="entry name" value="Mutator"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mutator-like transposase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="Mutator-like transposase" evidence="1">
        <location>
            <begin position="106"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="449" mass="50012" checksum="C42AFFB6042A5CB3" modified="2020-12-02" version="1">MAEENGEVADENGLVGIPVSYDMGWQKRGKGHNSMTGQGVAMGLGTGNVLAYATKCKSCRVCDHAKKKGKQPRRHDCRKNHVGSSKAMEPAVACELWNSAPKEKFENSSALSQKVINYLGKCFTYSVAQNRDVNNLKSAIKNIVPHAFGDHKGCCSSWCGYKKDPLTYRHKDLPYNRDLQGNELKSILTSLFDEYATDTVAQKHTPFANSQRSESLNSTIGSKNPKIRYYGGSESNDFRVACAVTQKNIGFSYVDKTLDSLGIDPGVTCSFHKSTMDKKQQCDKKRKSSKEYKIRRHQLQSERISKTARKEAKEGKTYETGIGLNLEKETTVTTTGNNTDVDVDKIVMGITNNKQLYENLMKLVPPFTERPAKEYLSHDPDKTYQFVLFDIETTCTGKQAEICQLSAICQNGDTFSSYILPNNSVGYYASKVNNLTVETINGKEHCAKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HP17</accession>
    <name>A0A7D9HP17_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Superoxide dismutase</fullName>
            <ecNumber evidence="3 8">1.15.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A039940</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Destroys radicals which are normally produced within the cells and which are toxic to biological systems.</text>
    </comment>
    <comment type="function">
        <text evidence="1">Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>2 superoxide + 2 H(+) = H2O2 + O2</text>
            <dbReference type="Rhea" id="RHEA:20696"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:18421"/>
            <dbReference type="EC" id="1.15.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the iron/manganese superoxide dismutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.15.1.1" evidence="3 8"/>
    <dbReference type="EMBL" id="CACRXK020001562">
        <property type="protein sequence ID" value="CAB3989857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HP17"/>
    <dbReference type="OrthoDB" id="239262at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004784">
        <property type="term" value="F:superoxide dismutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.990">
        <property type="entry name" value="Fe,Mn superoxide dismutase (SOD) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.55.40.20">
        <property type="entry name" value="Iron/manganese superoxide dismutase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001189">
        <property type="entry name" value="Mn/Fe_SOD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019833">
        <property type="entry name" value="Mn/Fe_SOD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019832">
        <property type="entry name" value="Mn/Fe_SOD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019831">
        <property type="entry name" value="Mn/Fe_SOD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036324">
        <property type="entry name" value="Mn/Fe_SOD_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036314">
        <property type="entry name" value="SOD_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43595">
        <property type="entry name" value="37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43595:SF2">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN MS42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02777">
        <property type="entry name" value="Sod_Fe_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00081">
        <property type="entry name" value="Sod_Fe_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000349">
        <property type="entry name" value="SODismutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01703">
        <property type="entry name" value="MNSODISMTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54719">
        <property type="entry name" value="Fe,Mn superoxide dismutase (SOD), C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46609">
        <property type="entry name" value="Fe,Mn superoxide dismutase (SOD), N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00088">
        <property type="entry name" value="SOD_MN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0464">Manganese</keyword>
    <keyword evidence="4 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Manganese/iron superoxide dismutase N-terminal" evidence="9">
        <location>
            <begin position="36"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="Manganese/iron superoxide dismutase C-terminal" evidence="10">
        <location>
            <begin position="148"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00049204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3989857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="30180" checksum="75C9D0331838496A" modified="2020-12-02" version="1">MWKLSLAFLLFYAAITTGKSVEPVPPYEEAFQAREEYSLPTLPYNYSDLEPHIDEETVRVHYLRHHAAYTAQLNHVLQVWRNSSEEGKELASKSLVEILTKINEVPEKYQHHVRNVGGGYFNHALYWATLTPNPTSEDREPGPLTDHLIYSTFENKERLRKWIVHEALDIFGSGNLWLCVDPKLPKHITIYSLANQDTPFSHGLFPILLVDVWEHAYYLKHHNKRVDYLDAWWNLVNWKTVEDLIKRYGVNQFHDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXG2</accession>
    <name>A0A7D9HXG2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Retrovirus-related Pol poly from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A047461</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002613">
        <property type="protein sequence ID" value="CAB3995164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXG2"/>
    <dbReference type="OrthoDB" id="413361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3995164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="42251" checksum="47C777A2CB8D4A75" modified="2020-12-02" version="1">MSAEFQNFLKEKGIHHETTVPHSPQQNGIAERMNRTLQEAALSMILHAGVSKSFWAEAVCSAAYIRNRVITTATGVTPYERWYGKKPDISNFRVFGGTAYAHKLDQKAVKMRFVGYCLTQKGYRLYDENKRKIFIRRDVTFNETDFGHTNRVQLEVEEKDDECCKEESNKKSPDSRCSARERKPPVYYHDEYAGITTAKHTALFVTEVEEPTTLKKALESAHAENWTTAADSEYQFLMENETWELVELPPGRKAITCRWVFKVKHGENGKIDRFKGRLVAKGSLQKYGIEFDETFSPVVRFTSIRALLAFAVSRNMFIHQMDVVTAFLNGTLDEDIYMEQPEGYVVPGKENLVCHLKKSLYGLKQSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I026</accession>
    <name>A0A7D9I026_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Calmodulin-lysine N-methyltransferase</fullName>
            <ecNumber evidence="3">2.1.1.60</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A073442</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.60" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020002478">
        <property type="protein sequence ID" value="CAB3994504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I026"/>
    <dbReference type="OrthoDB" id="413520at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018025">
        <property type="term" value="F:calmodulin-lysine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025800">
        <property type="entry name" value="CaM-Lys-N-MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019410">
        <property type="entry name" value="Methyltransf_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13539">
        <property type="entry name" value="CALMODULIN-LYSINE N-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13539:SF3">
        <property type="entry name" value="CALMODULIN-LYSINE N-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10294">
        <property type="entry name" value="Methyltransf_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3994504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="34954" checksum="E4BAED8F5555A74A" modified="2020-12-02" version="1">MEEDGISKSNTPKERWQLLRMFIKNRNLNVQHKRSHAFGLFTSCKITDLREEGFENFDDRCEAKDDYEWLEYTCEHFTSCRLAVRQRVRAVNWNDATGFDNTGNICVWPSEEILSYLCIKKSKDFSEKTVCELGAGMTGLAGMMVAIASDVQEVLITDGNMDGVTNLQEINKANKRRFGKSEVHIRQLRWDIKEDYKDFENYFDYVICADCLLYEQVHENLLDVMSALLKADGMVLIVSPRRGFSVEHFIENAQKWFACEYIENYDEFISSEYCKEKQRLPSSEAIRNFPALLKMRKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4X5</accession>
    <name>A0A7D9I4X5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002909">
        <property type="protein sequence ID" value="CAB3996623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4X5"/>
    <dbReference type="OrthoDB" id="6149412at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16766" checksum="4DD8F881FB1AA786" modified="2020-12-02" version="1">MKYYADLKSNVKPSHLEGDTVLLKNDYKSKRFPPYDPRPYKVVEKKGSMVTATRDSRSVTRNSSFFKPIVKPENEETECPELCVPERSQENPDISEDAECKTQENSDVTKDPEREAPHTENPSIVTEMPRYPRRVRKKPDRYQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAZ4</accession>
    <name>A0A7D9IAZ4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057679</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004407">
        <property type="protein sequence ID" value="CAB4002644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAZ4"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="688"/>
            <end position="859"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1024" mass="117133" checksum="A452021AEC20F64D" modified="2020-12-02" version="1">MLPQQSDTGVQSAEVSVITCTGDRSEVSNLTTENNDYRAEIPVAKIDIISPIDNSSLVELENFIDDSFCNIMNSRHSEVTKGTVEQVFVNSTPFKQRESDNATTKNALFDNFKEKVEYEISNLLAKLTKQDETININKQDICKLREENLHLKSRISKLEEKMASASIEKFPGAIEISSVTPTTQYVPISTKKKANEDRIPESNVPNMQSNPENRGFCLKDDRCDFSHAWVPTRRNDRLVSNGGGVCAYINSNIYCRRIEEFENSSIESLWLSVRPKKLPRSVSVILLAVVYHSTASRQTENVELYSHIQTNVDSFLYSHPEALVLITGDFNFRSTGLDANHLKRIAGLTQIVKVATRADVTLDWCLTNSKVDNIYESIQLPPIGTSDHYTILMKAQPSPSKPDNSHIWKRDLRDSRIRPFGRYITTFDWSPILDIHDCDTKYEKFNDTMTVMIEKFFPLERIKVRKCDKPWMTSSIKSAIGRRQKALHESGKNSDIYKYWRNRVQSCIKVARKIYYMRSVEKLENSNPARWWKEVKAIGGLSSKNSWYSQLFSDDVRNCEELAENFNNFLTALTSHFDPLTLDEIQEGLEVPNHYLVDAQQIYMKLSKIKTTKSPGPDMFPNKILKTFAFELAPVISDIFNSSMTQGTFPKALKRSIVVPVPKKSTTHALVYLLHSILVALERGSCTARLFFADFKKGFDLVDHNVIIKELTLLGTHPSIIRWIKAFLCDREQCVRVGTSMSSWKKTNGGLPQGTKLGPLLFAVLINSLLKNWPSRIKFVDDTSALEIIPRFSSSLMPLVVNEISDYALERGMELNYKKCKQMLINFLKYKGSDDENPIYVAGKPVETVSSFKLLGVWISNDLSWNTHVDMVLKKANSRLYALRLLKKAGLQASDIVQIYISFIRSRIEYASPVWSSIPKSLSDILESVQKRALRIAYPDLLYDEALEISNLQYLSTRRDISCKKFVESLRRDVSPYNPLTQIMEIRPGVKTHDYDLRNDRTAEQPLWSETTERLKNFVTRKYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IG97</accession>
    <name>A0A7D9IG97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Kinesin KIF27</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030794</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005097">
        <property type="protein sequence ID" value="CAB4005109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IG97"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="14135" checksum="FCCF9891E4B430AF" modified="2020-12-02" version="1" fragment="single">MTQNDLSQTDVIHVPLELRDAVLDNEKVSVLYDERERKLTDLEHHLEKMKQQQDNLQKKLKDETEKKSKMEREVQKDQQRIKELEEKNVQNEKILKRKTEEVVAAQRKLRRKTSKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJL2</accession>
    <name>A0A7D9IJL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC110237337 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009962</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007346">
        <property type="protein sequence ID" value="CAB4012016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJL2"/>
    <dbReference type="OrthoDB" id="5980952at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="384"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="384"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="405"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="447" mass="50574" checksum="BD52C4305975978A" modified="2020-12-02" version="1" fragment="single">MSNKRGHCPPTGDTPGKPKEKNQRNIEQIEGRHISSKKSLFAQNTKGKKQDWNKDELKGLVRYVALYESSDCWPTHKRVAFWDDCAKDVAESSGMPLRTGGACRLKVIDHLKKKFKTVNDAEEAYDIDYVNEMEKARNDSAEFEHEELCGDLMTLIVQNLGKMSSIQRMQLATFIYSFIAENDFSEDLKHFIPSNFIELSLLAMDHLKSNNKDNIVFNLCKSLGIMREDGSSARLNVNRMPFGLLDFNCKFFASDDGSNLRASKDYKTWMETMYANFGNSWARLHLGPMWSYVDQVDEKENIEVENKENVEKSKGKNQEAPKNNIIEEALSCALGGLSIPDVLPIDSETNQNHQQVLEDSSVLSPGSSIRLSTLWSSFSESEKEELAGAEASPKEIETMHNIQSRPKKNQKKDRKTMDAKVNVAGPSDRTIRRDIANSGFFCGTEIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ILE1</accession>
    <name>A0A7D9ILE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054188</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006828">
        <property type="protein sequence ID" value="CAB4010555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ILE1"/>
    <dbReference type="OrthoDB" id="10385543at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="284" mass="32438" checksum="D9003586B20C579E" modified="2020-12-02" version="1">MVDEDAETQEDDTDFTSARNSAQTSTSSRNSAQTSTSTRPHLTIGHLGPSREDTTRANSSGLSENAERVLTNLQKEVASLKRAVTTMNDVQQEILACVKKIKMGVESDKFDLANCCHTENIIQLLGKYYSSKGKFPLDFPEKQRALKLEFTGSPTGLTCEELLLRYKKFENAKMSYWRSEERRRLLGIAGYDALLTAPTDVMTDKILHLIGQKHSSGCHKIHLTNEIIVARKYIREITVQRARKQKEFWQGLYAWKTTKWPNGIPQEDWLDIRRDDLACYQEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRF1</accession>
    <name>A0A7D9IRF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A056226</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007283">
        <property type="protein sequence ID" value="CAB4011839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRF1"/>
    <dbReference type="OrthoDB" id="5987296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17368" checksum="86E96E67F3E41999" modified="2020-12-02" version="1">MIGMTLNPDKCKFHVTEVTYLGHKLTGEGVQPDQTKIEAIINMPAPQDKLGVQRLLGMVNYLAKFIPAMSEITAPLRELLNKQVPWHWTANHQAAFKKIKEILSTDRVLRHYDVTKPVVLQMDASSKGLGAVLLQDGLPVAYAIRTMTTTQKRYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IU66</accession>
    <name>A0A7D9IU66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079106</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007914">
        <property type="protein sequence ID" value="CAB4013509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IU66"/>
    <dbReference type="OrthoDB" id="5988588at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="575" mass="65821" checksum="ECCC0D18A0D11C5B" modified="2020-12-02" version="1">MQEAVADHDRKLKELFDLCRAKHIKLNPNKIELKKTSMPYIGHILTFDGVQADPAKVQAILEMKQPTDVAGVRRILGTVNYLAKFLPHLSQVSEPLRQLTKKNQPFDWDKSHETAFTQIKKLITEPPVLKYYESTKPLIIQCDASDHGLGAALIQEGKPVAFASRALTHAEKQYAQIEKELLAIVYGTERFHQYTCGRPVTVESDHKPLEVIHQKPLSAAPRRLQKMMMRLHEYDLTIVYKKGSEMLLADTLSRHHLDNSTDEARSVNSDLDQVDSLEEINEILNCETTTIFQDHTTKDQDLQQVKSFIQSGWPESSKDLSPAITPITPYFHLRDELTTHEGLVFRGDRVVIPKSLRKQVLNELHAAHQGIASTSRLARATVYWPHLNQELKDHISHCITCDTFNSKQPKEPLIPHEIPKRAWAKFGCDIFEFEKKSYLVTVDYYSNFFEVDRLEKLTSLAVIKKLKPHFARFGIPNTLVTNNGPQFISDDFRDFSMKYQFEHITTSPYHHQSNGKAESAVKQAKRIIRTCKSSNDDIYLALLAHRNTPQTTHETSLTAVQRLSCPSRRSCSNRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IXJ9</accession>
    <name>A0A7D9IXJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005963</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008730">
        <property type="protein sequence ID" value="CAB4015487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IXJ9"/>
    <dbReference type="OrthoDB" id="8195376at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="700" mass="79142" checksum="3AF7D232E3B7F8E0" modified="2020-12-02" version="1">MASGNTLHFDPDLHPDDTLKAFNDFIQSFYLRYEAQYPDPPKVSIDAAIERWKLANEEAKPTLEQYDTLRNEWRSKDRVAKFLGMFSSRRMYADWQVAEPDVTKRAQATWEYFVAQIQAYYKPTENLTLKNHKFRTLTQATQEAFPAFCNRVYKEAQHCNFKCQNDDCTAEDTAIRDQIIIGTIHDKIREEALKNSWDLPKLRKEGMQIESATKGVNELNNENPINKMGKYSYKNLKKKQQTGKPRACYYCGQDIKASIIEHVKTCRAKTSKCNFCDTIGHYESVCRKKKAVRELTTINPESQPRHEEDAEDSGIYNINIFRVTDTNPYQQHHTSLRMKEDFKVQVIVNNSLATVLADTGASISVCGKAEAKRWNLLSRMVKTQAKIKPYNSPPIPISGTTKCAVTFGNSSIPVEWHIIDNPCEPVLAGRIAEELGIIKFEAKPTVFQPVQMIHSTDNKETLQNILQQFPQNFEGLGKLKNHQVKLHVDTSIKPVTTPARPVPYHLKERVTKEIEKMIKQDVIEEHPATKPAPWISNAVIAPKADGAIRMTLDARNVNKAIQSSNLPIPRQEDIKAKLSGATHLIHDDIIVATTTNAEHNEAIEAVMNAISNAGITLNPDKCTFGVPEIGFWGLRIGSDGVRPDPAKVEALDHMTPPQSKEELTSFLCMMQSNSDFIPNVAQLAAKLRELTQNTKQPTKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZQ5</accession>
    <name>A0A7D9IZQ5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">DNA topoisomerase</fullName>
            <ecNumber evidence="3 7">5.6.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A043134</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP-independent breakage of single-stranded DNA, followed by passage and rejoining.</text>
            <dbReference type="EC" id="5.6.2.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the type IA topoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.1" evidence="3 7"/>
    <dbReference type="EMBL" id="CACRXK020010913">
        <property type="protein sequence ID" value="CAB4020351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZQ5"/>
    <dbReference type="OrthoDB" id="430051at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00186">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03362">
        <property type="entry name" value="TOPRIM_TopoIA_TopoIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.290.10:FF:000001">
        <property type="entry name" value="DNA topoisomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.140:FF:000002">
        <property type="entry name" value="DNA topoisomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="entry name" value="Topoisomerase I, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.20.10">
        <property type="entry name" value="Topoisomerase I, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.290.10">
        <property type="entry name" value="Topoisomerase I, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000380">
        <property type="entry name" value="Topo_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003601">
        <property type="entry name" value="Topo_IA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023406">
        <property type="entry name" value="Topo_IA_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013825">
        <property type="entry name" value="Topo_IA_cen_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013826">
        <property type="entry name" value="Topo_IA_cen_sub3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003602">
        <property type="entry name" value="Topo_IA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034144">
        <property type="entry name" value="TOPRIM_TopoIII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056452">
        <property type="entry name" value="Zn_ribbon_TOP3B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11390:SF20">
        <property type="entry name" value="DNA TOPOISOMERASE 3-BETA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11390">
        <property type="entry name" value="PROKARYOTIC DNA TOPOISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23546">
        <property type="entry name" value="Zn_ribbon_TOP3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00417">
        <property type="entry name" value="PRTPISMRASEI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00437">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00436">
        <property type="entry name" value="TOP1Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="Prokaryotic type I DNA topoisomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00396">
        <property type="entry name" value="TOPO_IA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52039">
        <property type="entry name" value="TOPO_IA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Toprim" evidence="9">
        <location>
            <begin position="3"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="Topo IA-type catalytic" evidence="10">
        <location>
            <begin position="170"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="820"/>
            <end position="846"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="820"/>
            <end position="843"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS52039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4020351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="857" mass="95929" checksum="91EE4B44666DB737" modified="2020-12-02" version="1">MKTVLMVAEKPSLAQSIAKLLSNGKMTTRKGLNGACSVHEYNGTFQGTTVKFKVTSVCGHVMALDFHHKYNNWDAVNPVELFQAETLKKEANPKLNMVKFLQQEAKGVDIVVLWLDCDKEGENICFEVLDCVEPVMNTTRSNQQTVFRAKFSAITESDIKLAMNTLIEPDENQARSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISYGPCQTPTLGFCVQRHDAITSFKPEPFWVLQLKVESSLGRTFALDWERVRVFDKEVATVYYSKVQEVQEVIVESISKKEKAKQRPQALHTVEMLRVGSSALGMGPQHTMQIAESLYTQGYISYPRTETTQYPEKFDLRGTLQQLQGGAAWGATVRELLHTAMNKPRKGHDVGDHPPITPMRLAREGELSGDAWRLYDYITRHFIATLSPDCKYLQTTISFTAGEESFSFSGKTPIDPGFTSIMPWAAIPVEETIPPLEKGATCKVSELKVAERQTSPPDYLTESELITLMEKHGIGTDASIPVHINNITQRNYVQLHSGRRLVPTSLGIVLVHGYQKIDQELVLPTMRSSVEGTLNLIAVGKANFDAVLSHTIDIFCRKYLYFEKCITNMDELFEVSFTKLADTGKALSRCGKCVRYMKLVSAKPIRLHCSHCDETYSLPQNGTIKLYKELKCPLDDFELVVCSTGSQGKTTPICPYCYNNPPFPSMKKGMGCPECRHPSCKFSPATLSVCPCLTCEEGMVVMDTMSGPKWKMACNKCNMVLHVFEDAFKVSLSEDGCDECGASLIDVTFHRNKSPLPGDKTEHTGCAFCDPVLVPMVKFDMAKGRHPMFRRGRGGKRGRGRGRRGRRGRGKPKDKMAQLDAFFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J1M4</accession>
    <name>A0A7D9J1M4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nuclease HARBI1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010107">
        <property type="protein sequence ID" value="CAB4018652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J1M4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="65" mass="7474" checksum="6A62AEC08E4E2FB2" modified="2020-12-02" version="1" fragment="single">MSKSLDFLSNGYDELSSFCHKAKNDFAQLNKKLDNLTTRVDEIGQAIDNIERYSYQYNVKIIGIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J4Z6</accession>
    <name>A0A7D9J4Z6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011911</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011816">
        <property type="protein sequence ID" value="CAB4022123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J4Z6"/>
    <dbReference type="OrthoDB" id="10440502at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.2000.10">
        <property type="entry name" value="Frizzled cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036790">
        <property type="entry name" value="Frizzled_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="12572" checksum="D831600722815760" modified="2020-12-02" version="1">MIAFLHRMLKSAKISDAECEKNVADVVCKVAIPACSKDQTKIVSLLSKQDCREIVGCVNKTNDANLIQGTHGLCDGLPDGTTAKKYSLDNVYDNKAAGHAMAFSSLFIASLVSLSFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBG1</accession>
    <name>A0A7D9JBG1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014143">
        <property type="protein sequence ID" value="CAB4026335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBG1"/>
    <dbReference type="OrthoDB" id="5968803at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8693" checksum="FCDFC53B25FC18CF" modified="2020-12-02" version="1" fragment="single">MAEQIPAPKPLKLDGNAAENWRRWKKAFELYMTATEKDKKSQKIQCATFLTLAGEAAITVYETLTFEDTEKDKIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K550</accession>
    <name>A0A7D9K550_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A033922</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the G-protein coupled receptor 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027855">
        <property type="protein sequence ID" value="CAB4041152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K550"/>
    <dbReference type="OrthoDB" id="2129233at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043458">
        <property type="entry name" value="GPR158/179"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32546">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTOR 158-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32546:SF26">
        <property type="entry name" value="SMOG, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0807">Transducer</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4041152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11940" checksum="F9624BAA55F5F4C0" modified="2020-12-02" version="1" fragment="single">CVHVPGGGFTAGNYRCFCRKGFYFPNPNAKRKYFEGREVLAAEGKANYSLYDCLPCREGCEECVDDTPCMYQRNVSLRIVLLSINEIIKTAAIALGVFVFVLRENK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KBI1</accession>
    <name>A0A7D9KBI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Probable endonuclease 4 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A020277</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AP endonuclease 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032703">
        <property type="protein sequence ID" value="CAB4043588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KBI1"/>
    <dbReference type="OrthoDB" id="5983649at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003906">
        <property type="term" value="F:DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.150">
        <property type="entry name" value="Divalent-metal-dependent TIM barrel enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001719">
        <property type="entry name" value="AP_endonuc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018246">
        <property type="entry name" value="AP_endonuc_F2_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00587">
        <property type="entry name" value="nfo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21445:SF0">
        <property type="entry name" value="APURINIC-APYRIMIDINIC ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21445">
        <property type="entry name" value="ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00518">
        <property type="entry name" value="AP2Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="Xylose isomerase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00729">
        <property type="entry name" value="AP_NUCLEASE_F2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51432">
        <property type="entry name" value="AP_NUCLEASE_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="18"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4043588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="26950" checksum="EF43913B09F51CBD" modified="2020-12-02" version="1" fragment="single">AEKSVFEDNEIASEPKHSPTKKTRPNHNKKTKALTYQKFPRDEKHLPENFIQIKEEKNVLSVDNEHCTSTSSHAKTEDQTCDKITKEDKYVGAHVSISGGLHLAAERALEIGAKSFAMFLRSQRQWNAKPLDPRNADLFRSACKEFGFSPRVILPHGIYLMNCGSPEAETLSKSRQVLVDELKRCEMLGLTLYNFHPGSSCGKISVDECIDLIAESINLAHQQTKYVVTVLENMSCQGNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KDU0</accession>
    <name>A0A7D9KDU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A085305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034212">
        <property type="protein sequence ID" value="CAB4044190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KDU0"/>
    <dbReference type="OrthoDB" id="5969690at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="140"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="309"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4044190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="430" mass="49268" checksum="67BC45BE22FDCD18" modified="2020-12-02" version="1" fragment="single">MKVKDQRALDKETLSTMIVHGSKDSISNVINCKDYSSLGRLLRVTAVVLKFIKLLKSRVKQEDPPTNSEVTSTDIELARVLWIKELQEEMKLNENFKSWNRDLGLFTDENGTVRCKGRLSNSSLPYSAKYPILLDTAHYLTTLIVRDCHERVMHGGIKATLTELRSKFWLVRGRNFVRKLLFNCVTCKKQDGRAYKALNSPPLPEFRVKEAPPFTYVGLDYVGPLYVKSTNDLDEKAWICLITDPLPAVFLECRPLSYVSSEDVEEPLTPAHLLSGRWILSLPDRHRENPEDEDFQVDLSTNDLNKRIPKQTVEKSSVEVGDIVLVHDENHPRSFWRIGRIKELVNSTADGKSRGAVVQVMSKKGNVTTLRRPLQLLYPMEINCKLAKEEVQLEQQEDGAQESTESERPRRRAAIEGELLIRHWIKDMNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KXN8</accession>
    <name>A0A7D9KXN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011395">
        <property type="protein sequence ID" value="CAB4021358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KXN8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="55" mass="6366" checksum="12DC00F65BB391F5" modified="2020-12-02" version="1" fragment="single">RGRWAKVLLEEVFPDTEGIVRRVTVRTANGVYQRDVRKIWLLEGNLLGQETVVQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8K2</accession>
    <name>A0A7D9L8K2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A027598</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015613">
        <property type="protein sequence ID" value="CAB4028631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8K2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="entry name" value="Serralysin-like metalloprotease, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049:SF1">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="59"/>
            <end position="1057"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="59"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="105"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="212"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="296"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="359"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="443"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="471"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="580"/>
            <end position="634"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="642"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="679"/>
            <end position="734"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="755"/>
            <end position="769"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="782"/>
            <end position="886"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="898"/>
            <end position="1057"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1057" mass="110999" checksum="F23E3C4B5DDF2096" modified="2020-12-02" version="1">MIHIKIEEDFRYISKTEVVKKMIELVHELQESIYLIVGKHILLRTDVVPDAEDKVPAAVDKVPDAEEKVPDAVEKTPDAEDKVPDAEDKVPHAEYKVPDAGNKVPDADDKVPDAENKVPDAEVKVPEAEDKVPDAEDKVPGGEDKVSGGEDKVPGGEDKVPGAEDKVPGGEDKVPGGEDKVADAEDKVPDAEDKAPDAEDKVPDAEDNVPDADDKSPDAADKVHDAEGKVPDAEDKVPDAEDKVPHAEDKVPDAEDKVPDAEDKVPDAEEKVPHAEDKGPDAEDKVPDAEDNVPDADEKSPDAADKVHDAEGKVPDAEDKVPDAEDKVADAEEKVPDGEDKVPDAEDKVPDAEDNVPDADDKAPDAVDKVHDAEGKVPETEDKVPDAEDKVPHAEEKVPVAEDKVPDAEDKVPDAEEKVPDAEDKVPDAEDKVPDAEDNVPDADDKAPDAVDKVHDAEGKVPDAEDNVPDAEDKVSHAEDKVPDADDKVPDAEDKVHDGQGPDVEDKVPHADDKVPDAEDKVPHGQVAHAEEKVPDAEDKVPDAEDKVPDAEDKVPHAEDKDKVPDAEDKVPGVENKVSGGEEKLPGGEDKVPDAEDKVPHAEDKIPGGEDKVPGGEDKGPGGEDKVAGGEDKVPGGQTKVADAEDKVPGGEDKVPGGEVKLPGGEDNVPGGEDMVAGCEDKVPDAEAKVPGGEDKVSGGEDKVCGGEDRVPGGENKVSDAEDKVPGGEDKVPGGEDEVAGGEDKLAAGENKVPGGEDKVPDGEDKDKVPGGNEKLPGGQDKVSDAENKVSDAEDKVPDADDKVRGSEDKVPDAQDKFPYGEEKVPGCEDKVAGGEDKVPGGEDKVPGGEDKVAGGEDKVPGGEDKDLGGKDKVLGGEDKVPDADGRVPGGEDNVPGGEDKVAGGEVAHAEEKVPDAEDKVPDAEDKVPDAEDKVPDAEDKVSDAEDKVPDAEDKVPDAEDKVPDAEDKVPDAEDKVPDAEDKVSDGEDKVPGAEEKVPDAEDKVPDAEDKVADAEDKVPDAEDKVPDAEDKVPDAEDKVCDAEDKVPDAEDKVPHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LAD0</accession>
    <name>A0A7D9LAD0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020323</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014570">
        <property type="protein sequence ID" value="CAB4027048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LAD0"/>
    <dbReference type="OrthoDB" id="437005at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="193" mass="22186" checksum="3C3932A3E88FD2FA" modified="2020-12-02" version="1">MKDMGVLHYCLGVSVTIKDGVLQISQEQYIGKIMRKYKLQDCKTVSTPMDFNVKLVKDDGYSKPVYVVQYQSMVTVALSTSESEYIALRFATQEAVWLRQLMKDLQMDCTTATTIYEDNQGAIAMSRNPVLHKRTKHIDIKYHFIREKTQDGTIELKYCPTNEMLADILTKPLSKGQFEYLRCKLGLIQGHIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHV5</accession>
    <name>A0A7D9LHV5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Tetratricopeptide repeat protein 29</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A021284</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Axonemal protein which is implicated in axonemal and/or peri-axonemal structure assembly and regulates flagellum assembly and beating and therefore sperm motility.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019742">
        <property type="protein sequence ID" value="CAB4034016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHV5"/>
    <dbReference type="OrthoDB" id="5984918at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026000">
        <property type="entry name" value="Apc5_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051476">
        <property type="entry name" value="Bac_ResReg_Asp_Phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041617">
        <property type="entry name" value="TPR_MalT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46630">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46630:SF1">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12862">
        <property type="entry name" value="ANAPC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13176">
        <property type="entry name" value="TPR_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17874">
        <property type="entry name" value="TPR_MalT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="Anaphase-promoting complex subunit 5" evidence="7">
        <location>
            <begin position="26"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="MalT-like TPR region" evidence="8">
        <location>
            <begin position="82"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00040665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00044739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4034016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="429" mass="48861" checksum="0D1744764D18A695" modified="2020-12-02" version="1" fragment="single">MEQSDSKHEKEQVDKGDDLRSDDQFEIAIKYSDNAIKIAKERGDTSKETYALLDKGFAYATNNQFEAAIENFQKALKLAKDNEYKQLETKALKALKIARKHENKYQETEALLGLGDAYRGTFKFQKAIKDFNKALEIAQKHGNKYQETEALLGLGDVYRGTNQFQKAIQDTKKGLEIANENEYRQLKTRALLGLGDANRSNNQVRTAVEKLEEGLEVAMKDNDKQQEIRALVGLARGHRVKNEFEKAIGYFDNAVEIAKKYGDKYQKTEALLGLGDAYRANSDFETAVKYLGEALELAKTHEYKQLETMALIGLGRVYRGKCEFPIAIKYLEEALEISKEQEDKQQEISALLVLAQVNISKKMGGNAIKYCKKSLKIAKRRKYTQRKQEALLCLRDAYTLNKQPQKALRCSQEALRIGEVREDRSPENI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LS28</accession>
    <name>A0A7D9LS28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A059926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023818">
        <property type="protein sequence ID" value="CAB4038111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LS28"/>
    <dbReference type="OrthoDB" id="10055717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="661" mass="75073" checksum="2837489681C7D410" modified="2020-12-02" version="1">MLKCCHIRVAESRDIKPFEEIFIWGKLEDKNEKFTRDSYIEGTEHFQQRTGLLTAPIKISAEMMNDENKIPICVLNTTDKSIRVYREQTAATIQELPSTHNIAHMSESNMGGNNPSSQYDPVPEVSVGEQLTTQQRENLEVLIRKNTQVFDYPGNSGFTTTIEHTIPTAVSDPIVCHPRRHNLGLTQKINEAVGNHVKSGHLTPSKSPWAFPIVPVLKPDKTVRLCVDTRPLNKITQNDPYPTGNLQEVLDNLSGANYFSVIDLAHGYLQVPLTKEDRPKTAFRSPTGFWEWTRMPYGLKGSPAIISRLMQNVLGHLPPHRLALYMDDICIISKTFEEHLINLQGVFDALRQHGLRVKAKKCAFAMKEVKFLGHKVCNKGVQPEEHKVKAIRAWVAPTCLKEEQDDAFNTLRHELVKAPVLAHPDPTRPFVVTTDASKVGQGGELSQEDAQGQLHPVAYFSRALTRRERSYPTYDREMMAMRDTLKHFRYYLLGAQVVTRTDHKPLLKILEQKDPFGRRATLMRDIAEFEPRIEFIRGQDNHMADALSRIGWNAKWEERDEDTSKVATIGGSQDEIGPCKDVRLDINDFQLQQERDPTLKPHISTHRNQHGLFTRDHDHKKQVLLPASLVPTILSLAHDETGHQGADKMLEELNLIIGGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZG3</accession>
    <name>A0A7D9LZG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Amiloride-sensitive sodium channel subunit alpha-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A051927</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028449">
        <property type="protein sequence ID" value="CAB4041521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZG3"/>
    <dbReference type="OrthoDB" id="6021021at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015280">
        <property type="term" value="F:ligand-gated sodium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.770:FF:000001">
        <property type="entry name" value="Acid-sensing ion channel subunit 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.470.10">
        <property type="entry name" value="Acid-sensing ion channels like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.770">
        <property type="entry name" value="YojJ-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001873">
        <property type="entry name" value="ENaC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11690">
        <property type="entry name" value="AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11690:SF248">
        <property type="entry name" value="PICKPOCKET 17, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00858">
        <property type="entry name" value="ASC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01078">
        <property type="entry name" value="AMINACHANNEL"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11 12 13" id="KW-0407">Ion channel</keyword>
    <keyword evidence="7 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0915">Sodium</keyword>
    <keyword evidence="3 12" id="KW-0894">Sodium channel</keyword>
    <keyword evidence="10 12" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 12" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4041521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="308" mass="35686" checksum="990428940DF0CAD6" modified="2020-12-02" version="1" fragment="single">NYSNWWFPRWHYKYGNCYTFNGGIDEDYEPIRVLSTSKPGPSQGLSLRLNIQQEDYLKYVSDEAGVRVILHDQGMMPFPYLEGFSVSPGTATSVGIQKTVISRVDRFGNHTCWNVDGLDEDNIYRKFHQITKYTQQTCHNSCVGKTQLDECGCSEYSYPSNASACDAFNSTIRKCLWKIHHRFNEDKLPCMEECGQPCRENVIQKTISMSQWPSTPYQTYEKEKNLNFSTQSSLLLNIFYNELNYQRIEESFVYDEINLLADVGGQLGLWIGVSVITVFELIELFALILTRLFKRRRTEDRVNNMAIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M428</accession>
    <name>A0A7D9M428_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052467</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031666">
        <property type="protein sequence ID" value="CAB4043161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M428"/>
    <dbReference type="OrthoDB" id="6158912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="17640" checksum="3B070C2C8BF8716D" modified="2020-12-02" version="1" fragment="single">FKGLSGRQQRVLVNGEISETRPVSSGVPQGSILGPLLFLIYINDLPESITSSAVDVSLFADDTKCISVIESPVDACVLQAEARNVEKWAEFWRLKFNAEKCKVLSVTRKRHPLVAEYIVNGKTLQHVSSQKDLGVTVCSDLRWNTHIYEQITKANRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FIV4</accession>
    <name>A0A6S7FIV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000045">
        <property type="protein sequence ID" value="CAB3977397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FIV4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="193"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="26559" checksum="0AE0AF035F10FFD5" modified="2020-12-02" version="1">MGDDVKRLALIDANKYNTMMQTIEKLVSDKKILGDAKQTAAEGELIEGHATMVDSVKRNAPYATDDIINYVKKRKNYLKEKKEPAAAADDDGDEGDNPRRSALKPGSLARSEFLIRGHLKKVGVVETHKGVKFGGKTLPIAYDDMIADLTKNVKKTNTNLTSDQHTKLLKELKKTHMPVTYIRSEHLRNQYREIGGSDTPTTSRQEPPPPPLTYSSPRGPLMFSGRRKGSVRGYMFDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLN7</accession>
    <name>A0A6S7FLN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A073273</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endosome membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Late endosome membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Lysosome membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
            <orientation evidence="3">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the CDIP1/LITAF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000113">
        <property type="protein sequence ID" value="CAB3978437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLN7"/>
    <dbReference type="OrthoDB" id="5946232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031902">
        <property type="term" value="C:late endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006629">
        <property type="entry name" value="LITAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037519">
        <property type="entry name" value="LITAF_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23292:SF6">
        <property type="entry name" value="FI16602P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23292">
        <property type="entry name" value="LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10601">
        <property type="entry name" value="zf-LITAF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00714">
        <property type="entry name" value="LITAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51837">
        <property type="entry name" value="LITAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3978437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="14307" checksum="A39D73C2C9456436" modified="2020-12-02" version="1">MSAAQEENEEQCLLEEQTKPEYDESIFQEVPVYTNCPFCEEKIVSRIRLKYGRWTYWATACLCLFQCYCCLWAPFLVDDLKNIVHECPKCEKELAEYKQFRLFQRRRPKRSRKQSLLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVC8</accession>
    <name>A0A6S7FVC8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A040418</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the protein kinase superfamily. NEK Ser/Thr protein kinase family. NIMA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020000108">
        <property type="protein sequence ID" value="CAB3978370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVC8"/>
    <dbReference type="OrthoDB" id="248923at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000097">
        <property type="entry name" value="Probable serine/threonine-protein kinase nek1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000172">
        <property type="entry name" value="serine/threonine-protein kinase Nek1 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051131">
        <property type="entry name" value="NEK_Ser/Thr_kinase_NIMA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44899">
        <property type="entry name" value="CAMK FAMILY PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44899:SF3">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE NEK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="14">
        <location>
            <begin position="4"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="341"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="564"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="341"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3978370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="604" mass="68457" checksum="990E9E0BB57F0DB7" modified="2020-12-02" version="1">MDKYIRVRKIGEGSFGKALLVKSKTDGTQYVIKEINISKMAAKERQESRKEVKVLKTMQHPNIVSYIDSFEETGNLYIVMDYCDGGDLYQKINNQRGVYFTENQVLDWFVQIALAIKHVHDRKILHRDIKTQNIFLTRSGTIKLGDFGIARVLRNTMELARTCIGTPYYLSPEICENRPYNNKSDVWSLGCVLYEMLTLKHAFEAGNMKNLVLKIIRGSYPPVPPRYSADVRLLVARLFKRNPHDRPSINTVLRQPLIKNRINKFLPEEVVADEFSHTVLHRQPFVVPGQKAAPGRPVKPAAAPKRISKPAAKYGVSVANKVARKPANDAYNVRKPIKAGEREAVPEKAKEVDAREKRRQQLQKEQEDAYNKMMDNIQKQRWQKQQMDKINKAREQNWRNSGNILSPEKEVKKSNDGDDHGVVNKQAVAMKKYQNAGKENRPHSAYDAGHRPPPVPAWQAAKQQGEVNRVRAAEAGDRAKVLEEFWHRKRAALANKNRGGKPIGGPSVKANNLAPVPAPAPGISALRGKDVDQVKHSNPAEQDYLTRLEAIRKQNYRERIAIQQRMAKVRGPVAKPSSGGENGDPRVDPDARRKKIAALKVRYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G1W8</accession>
    <name>A0A6S7G1W8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Retinoblastoma-binding 5 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A065949</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000476">
        <property type="protein sequence ID" value="CAB3982186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G1W8"/>
    <dbReference type="OrthoDB" id="196858at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048188">
        <property type="term" value="C:Set1C/COMPASS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037850">
        <property type="entry name" value="RBBP5/Swd1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44040">
        <property type="entry name" value="RETINOBLASTOMA-BINDING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44040:SF1">
        <property type="entry name" value="RETINOBLASTOMA-BINDING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0853">WD repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="220"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="281"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="340"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="374"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3982186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="44715" checksum="84D21F35D6A7ABBF" modified="2020-12-02" version="1">MKQAPVLVHIKHGHKVLPTAGESEQNVVASFDRKGEHIYIGNAKGKVIVVDTETLKEVTNFKISSGTNANVAIKSIEFSRRGSAFLVNSSDRIIRVFDGQIILACKGQNTEPEPIQKLQDLVNRTLWKKCCFSGDGEYIVAGSSRQHSLYIWEKGVGNLVKILHGTKGELPLDVVWHPVRPIIASIASGVVSVWAQNHVENWSAFAPDFKELEENVEYEEHESEFDIEDEDKEEEINSGSECGDDVEVDVCAIERIPALCSSDEENDEDQNGLYYLPAAPEVDDPEEAFNPDVQKYDLKTGPSRKLSTNIQPEPPAKKPKIIEVDYSKDSVNTESELETTEARSEKDETGKDTTTEANTTDSAATKTEDEACKEITSATNTTTAETSDTATLTETSESTQSADDKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6R1</accession>
    <name>A0A6S7G6R1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010542</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001205">
        <property type="protein sequence ID" value="CAB3987628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6R1"/>
    <dbReference type="OrthoDB" id="5987559at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19884" checksum="EC41F1314C493915" modified="2020-12-02" version="1">MITKKAAKRIYSVRLLKRAGIADTDLVTFYSTCVRTVLEYACPAWFYSTTEYLREQIESIQRRIMRIIFPDTSYQEALDLAGIPRLCVRLEDLCDMFFSNIMKENHKLHDLLPPTYQTHYNTRSQASGIQFQLPTYETNRSRNNFIVKSAVKWNNTIRKNIGNYSPTYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6T3</accession>
    <name>A0A6S7G6T3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A038438</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000767">
        <property type="protein sequence ID" value="CAB3984652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6T3"/>
    <dbReference type="OrthoDB" id="10216928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="150"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3984652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19922" checksum="A452F3BF9EE9B064" modified="2020-12-02" version="1">MGIILKDTWLLNLGIEWKTSSPLCPQSKGSAESVMKALGKVIKTSMLERKNWRQELQRFLLNYRSTPHATTKIPPCELLFNRKVQENRPELSTQNVVNKHRKANENIDKKKISNKQYYDAKKNTKTSKIKEGDIVVCKQKPNNKLSPRFNPDRGEERRNSYGTKWQPHHHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G770</accession>
    <name>A0A6S7G770_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein ZIP4 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081223</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001200">
        <property type="protein sequence ID" value="CAB3987595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G770"/>
    <dbReference type="OrthoDB" id="65716at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051321">
        <property type="term" value="P:meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013940">
        <property type="entry name" value="Spo22/ZIP4/TEX11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38487:SF1">
        <property type="entry name" value="PROTEIN ZIP4 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38487">
        <property type="entry name" value="TESTIS EXPRESSED 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08631">
        <property type="entry name" value="SPO22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0469">Meiosis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00031845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3987595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="918" mass="104479" checksum="46B03D39D2262622" modified="2020-12-02" version="1">MEKDSHLNTLISRLKVLTKNLSQSKVESDADLDNIWSIVEELQKISFNKDEHCSALIQIHTCAVTLWNLAVGMKTEGSGNLTLNAKLRHGSCNLVSIANTVECTEASHKKQLVMATKTGRAWLDCDNPAMAETSLELAEECWENLSRKLSTKQSSQEKLFIIEECEKHIFRTYCYQAEVATANSKYEKAKQYINKAKSLLGRHPKESCCLAMVCYNFGVDTFQRQHYEECVEWLRESYELGKGEYPLDSEKQATTLRLLANAYLEWDHTKHWDTALNAVGLANTEHLHPAGLYLKAKILLLRETSSKELQFAFLESLRHQELTVDMGLSIVELAIEYKKTQLAFEGLKQLANAFQNTPDLSKIQLQHLELLVQHNQEEEAKNLVEHCIEGHNTGRPLDPETKKKFHNIIWDKAASKCEENKHSEALEWYNYSLSLFSPGERQSINAGKLHRNICSCHIALKDMEKARQSITEAESSDHGNPLNSYFDFKLALSEKNNSKAITAMNKMSENHDKLQNTEGLTIHDIICLAAQLALENNNQEVAIPALESIIKHSPDNKQVITAIRCLIRLKMSFLTEKEKRNDVNTTLFYLKTALDKLAQVNKSSYGEHAAECIWFMKIAWNLALESKGLHQEMHELFVLTDKFAKLCPQDKTSLLKQKSSLFMAAGCCLEIAKEQKNMEEKKKCFMQVLDHVNDCRKILQLLNKSVNQDQQNTDDVPVVLSVYEFDAKANLNYDDVECLLDQISKLPNTDGKTFETIAALSTKLPNTPRNIQITKNALVLAIRTHCKNNFSSPDYLSCSKSYRGLIEICLRNGASGDVESKEESWSFFQEVANLIESDRESTIPEIEIQWLMTKSWNTGVHLYGAGKYQAAEKWCGMGMRLLKQLSDLKHFYETKMTELYSEILLGIESGRTQMLVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G941</accession>
    <name>A0A6S7G941_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Homeobox unc-4 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A048915</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7 8">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the paired homeobox family. Unc-4 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000457">
        <property type="protein sequence ID" value="CAB3982040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G941"/>
    <dbReference type="OrthoDB" id="6159439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990837">
        <property type="term" value="F:sequence-specific double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000057">
        <property type="entry name" value="Short stature homeobox 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017970">
        <property type="entry name" value="Homeobox_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46799:SF2">
        <property type="entry name" value="HOMEOBOX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46799">
        <property type="entry name" value="HOMEOBOX PROTEIN UNC-4 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00027">
        <property type="entry name" value="HOMEOBOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="3 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0371">Homeobox</keyword>
    <keyword evidence="5 7 8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="DNA-binding region" description="Homeobox" evidence="7">
        <location>
            <begin position="81"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="138"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="199"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="156"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="221"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00038351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3982040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="240" mass="27977" checksum="DA5AFAEABBAEB6F5" modified="2020-12-02" version="1">MNYHYYPPGITYQGLNQHLNQVACYHHDETNCRCNPQAIYQNSLFGCTRAINHPVTSFGMGSFPDDVEIAVDLSKIRVTRTRRSRMQYSPWQVEEMEKVFQKTHYPDVFVREALAVRLDLAESRIQVWFQNRRARWRRKENTVATPGRRSLSQLEKPTELKSTRNEKDDTNCTRTNIKHSVANILAKPSKIIQVPWKVPKRGKKQRNQDTTKKTILASEALRPERDLCKTSEDASEISTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9W4</accession>
    <name>A0A6S7G9W4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081882</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001217">
        <property type="protein sequence ID" value="CAB3987693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9W4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="157"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="56"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3987693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="21934" checksum="3881CB1519238AB0" modified="2020-12-02" version="1">MPNVWIRSYRSNRSRVPKHSSSSVVLEKRVQAVKANVALRLAEQEQWRRFEGEIKLLEIEKKHRELLRQQKMEKENIERTQRLETLRQQSERELAEARQRVALMDLEAELEEQMEEQGEIDMSLVTQDQENIPTGADQFTGDIPRPFIYEDFLFENEPHPTMRNNSLNPDLSAKPLYSTPVMTASSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFR1</accession>
    <name>A0A6S7GFR1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001732">
        <property type="protein sequence ID" value="CAB3990828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFR1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="451" mass="50660" checksum="28D008997EB0A5DA" modified="2020-12-02" version="1">MIGRGAKRARVDDSGAEEVEKHDGGFVTPLQMFATFTHNITFEETRKLKLLATPAASPDSNMYTFIHNRQEYGVMRLEDATISADLQVTTAANGNPAATLRVAPMARPLAFGWKTKEIYVNNDLVNTTTTHESEISYVNAFLTETPDGRYDKRDLCLGWYDTAGQFDDTVGFQNGTNTVNHGGRRRARAVNQGARFKCYDKLDLLGHNKRFCPTSFDVKVELTRLSNDKFFHGVDANVTASKMRYHDLTLTIPMMKPVAQLSAAINELMIQNSEECKFYTTTYCYVGKPLAVGAQNVQVNDIFNGGRPTRFICFQKTQARYNGDNELNFHSMPFPDINHFQVKINEANIPPLITNAKEAYLNLVRVLDRRHSQMPVTYPAYESDFGIIVVDLTTNRDSYNQVLPNSTAGVVSVDIKYAAALQAAQQLVFIGEFRNQLSIGYKTAARNKFEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GFZ0</accession>
    <name>A0A6S7GFZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008153</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001683">
        <property type="protein sequence ID" value="CAB3990575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GFZ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="141"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="159"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="29407" checksum="73CB554BE61C87CC" modified="2020-12-02" version="1">MPINLIVYYVNFLSSATIDDKTKRENNRLSDQTGQWLIKSKYTSFKMSTAEPLAKSKPTDYNLCIKCQEHIKKEKLTKPMVVSTYETFLRYVNERFETGNPDYIGVSQRLKGLSPNELLKLGAQWHRNCYCETTDKNKLERDKKRYQMNSENNLKGKGRPSSASDSVSSRLTRSGKESFNRDACFFCQRSDPETARDAIHSCQSKNSANLIKDIVDKSDNAKWKVQLADILAEDDFLARDIVYHKSCIKYLNQPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GME4</accession>
    <name>A0A6S7GME4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000942">
        <property type="protein sequence ID" value="CAB3985940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GME4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="18512" checksum="041CCCDA5DE73C8E" modified="2020-12-02" version="1">MYRPRMREQVDEDAETQDPFNCFEDYFNAFYEEQTSNRIQNCQPSITSGSQRNDATSTRDSSGVSGYEALLRAPTEALSDKLLQLIGQKYSVNTNKTHLQNEVMLARKYVREMTVLRAKKEKEFWQAMYTWKTTTWPNGLSPDDWREVRREDLAAYDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMU8</accession>
    <name>A0A6S7GMU8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">phosphoethanolamine N-methyltransferase</fullName>
            <ecNumber evidence="5">2.1.1.103</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A049296</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>N,N-dimethylethanolamine phosphate + S-adenosyl-L-methionine = phosphocholine + S-adenosyl-L-homocysteine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:25325"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58641"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:295975"/>
            <dbReference type="EC" id="2.1.1.103"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="6">
            <dbReference type="Rhea" id="RHEA:25326"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N-methylethanolamine phosphate + S-adenosyl-L-methionine = N,N-dimethylethanolamine phosphate + S-adenosyl-L-homocysteine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:25321"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57781"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58641"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.1.1.103"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:25322"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>phosphoethanolamine + S-adenosyl-L-methionine = N-methylethanolamine phosphate + S-adenosyl-L-homocysteine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:20365"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57781"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58190"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.1.1.103"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:20366"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Phospholipid metabolism; phosphatidylcholine biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.103" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020002165">
        <property type="protein sequence ID" value="CAB3992995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMU8"/>
    <dbReference type="OrthoDB" id="8300214at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000234">
        <property type="term" value="F:phosphoethanolamine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44307">
        <property type="entry name" value="PHOSPHOETHANOLAMINE METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44307:SF2">
        <property type="entry name" value="PHOSPHOETHANOLAMINE METHYLTRANSFERASE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="9">
        <location>
            <begin position="58"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00035674"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3992995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30133" checksum="A4A26F72699A4D36" modified="2020-12-02" version="1">MAQDSSAQLQKFLDENQYTKNGILRYEKIVGVGFVSMGGIDTTEEFVARLNLKENQKVLDIGCGIGGSAFYMAKKFGANVLGIDLSNNMMNIALERAASEADIKDKVELKVMDALTAPFEPASFDVIYSRDTILYIEQKKELFKLCLKWLKPGGQFLISDYCCGTNIDNEEFENYVKQRNYFLLDPASYGKLLEKVGFVGVDAQDRTEQCISLMSKAKARTEQNKDNLLKHFTQEDYDALILEWGGCIKRCSVGYLKWGLFYAKKAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GPH3</accession>
    <name>A0A6S7GPH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077164</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001026">
        <property type="protein sequence ID" value="CAB3986511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GPH3"/>
    <dbReference type="OrthoDB" id="3937590at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="entry name" value="Serralysin-like metalloprotease, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048518">
        <property type="entry name" value="IBP_b_roll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21300">
        <property type="entry name" value="LbR_Ice_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="174"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="20109" checksum="18F143FD56806A24" modified="2020-12-02" version="1" fragment="single">DKVPGGEDKVTDGEDKVLGGEDKVPGNEDEVPGGEDKVPGGEDKVPGGGDRVPGGEDKVPRGEDQVPGDEDKVPGGEDKVPGGEEKVTDGEDQVPGDEDKVPGCEDKVPGGEDQVPGDENKVPGSEDKVPGGEDKVTDGEDKVLGGEDKVPGNEDEVPGGEDKVPDGEDQVPGDENKVPGSEDKVPGGEDKVTDGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQS5</accession>
    <name>A0A6S7GQS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080669</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002368">
        <property type="protein sequence ID" value="CAB3993985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQS5"/>
    <dbReference type="OrthoDB" id="5988787at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16753" checksum="41786E5232578F23" modified="2020-12-02" version="1">MYLSNRNLKRNRENKHKIQFPFGVYFNANGDAMLNDMVKRQGTCQRRAYRIPSSVLSSYTRHVIEFACKICDDQPKDNEGGNEDTGMLKLFQEDIEVLEAVENMLHVQMEAWASNRVTDGELVEDNLQVAEDINYDYSFTEARF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRZ7</accession>
    <name>A0A6S7GRZ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Homeodomain transcription factor 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001160">
        <property type="protein sequence ID" value="CAB3987351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRZ7"/>
    <dbReference type="OrthoDB" id="5969247at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039775">
        <property type="entry name" value="PHTF1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12680:SF6">
        <property type="entry name" value="PROTEIN PHTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12680">
        <property type="entry name" value="PUTATIVE HOMEODOMAIN TRANSCRIPTION FACTOR PHTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0371">Homeobox</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19878" checksum="8DA63C33761A791A" modified="2020-12-02" version="1">MWLCLRSMLKRRGPQRSVGVIISSTFLLGICLVVITCVQLLKGTEKERFLSKLFNVEVFIWSLVLWIYQLRFVTLGSKINRKFRNNSVLMTEQLNLYLQMEKNPAKKDDLMIANNVLKLATKLLKDLESPYKISGLATNPLLYNITRVVVLSLISGVMSDLLGFRLKVWKIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSZ8</accession>
    <name>A0A6S7GSZ8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">P-type Cu(+) transporter</fullName>
            <ecNumber evidence="3">7.2.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A040958</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus</location>
            <location evidence="1">trans-Golgi network membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="11">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.2.2.8" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020002193">
        <property type="protein sequence ID" value="CAB3993142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSZ8"/>
    <dbReference type="OrthoDB" id="436087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140581">
        <property type="term" value="F:P-type monovalent copper transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.150.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059000">
        <property type="entry name" value="ATPase_P-type_domA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051014">
        <property type="entry name" value="Cation_Transport_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48085">
        <property type="entry name" value="CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48085:SF5">
        <property type="entry name" value="CADMIUM_ZINC-TRANSPORTING ATPASE HMA4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00122">
        <property type="entry name" value="E1-E2_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00119">
        <property type="entry name" value="CATATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG00002">
        <property type="entry name" value="C1.7:_P-type_atpase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00003">
        <property type="entry name" value="Haloacid_Dehalogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="Calcium ATPase, transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="HMA, heavy metal-associated domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="245"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="299"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="325"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="469"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="506"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="834"/>
            <end position="854"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="860"/>
            <end position="876"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="13">
        <location>
            <begin position="159"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3993142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="894" mass="98278" checksum="4A279712864D61D3" modified="2020-12-02" version="1">MPVPLISEDEYITRVENFDSLYSNDDKPVTRQPNDVSPNHQAHARMYPTHASLSIPTHNEAKTNGNRASTKSVDEKKFYFPPYNKIKNHCVVEPHHGHKHYHKHEYHHGDNESDHMFCCLDNSYTERDENPEFVSDCAEELKYSVKVHDSVIIHEAPLQTTKLRVQNICCPKEGRIVQEELGKLPGINTIRVNILGRVAYISHDQDKVTPPEMLEALKKRHLGASIVDAGAEAEVDHGFPRQLKILLAILAVQAVLFSIALAAMFSYASWYMWVAVVQICFGMLPVLKKCYHAIYHLQIDLNVLITVTVIGTLAIQQWIEGGAVVFIFILANFLQEFCFYRVHKTISSLMLAKPSKAVMACTGKLVPIEDVSIGSIIAVRQGELIPLDGVVVKGSASVDESSISGEAAPVEKTLKSQAYSGTVIQHGYLELETTSSSTSSTISKIAAMVQDAQMNVSPTKIMMNKFASYYTPLVVLLAAIVFLIPLILHLSGVYGGSIKTWGERALIVLVTACPCALLMATPVVVICRISGAARLGTLIKGGTFLEALSQIEFLAFDKTGTLTEGKFQVVDLMTVSKDEENDVMRWAAALESKSSHPLAAAVVTEFTGECVADFVNDVEEIQLPDVSNFKTMEGQGISGVVEGHFIDIGNPAMLERLDVKLTPEFETEYDRLCAESKTVVFVCVDEELALMISLADIIREESHLALRWLQDLGVHLAMLTGDSKETATAVQKQLKLDSCVSEMKPDDKLKWITNIKEEHTLRKRRCCRGEKVPLVGMVGDGVNDGPALATADVGIAMAAGGSALAVEAAGVAIMTNSVLKVPEMICLSRFCRRLIIENIVLAILLKLVFVVVAAMGYVQVWMAVVADLAGLLVVILERTEASHMETTQIEYQDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVH5</accession>
    <name>A0A6S7GVH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A048786</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002395">
        <property type="protein sequence ID" value="CAB3994122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVH5"/>
    <dbReference type="OrthoDB" id="10677463at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003582">
        <property type="entry name" value="ShKT_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51670">
        <property type="entry name" value="SHKT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="115"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="115"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3994122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="344" mass="37012" checksum="A230649A20D9B580" modified="2020-12-02" version="1" fragment="single">MADNNDDNDDGAKLGESEAVKLVGGSQVGTPLANVKLVKELLQSGTALNSDANNQVPLIANDQSLLQKSPPLVQTTMIQPQQLVQQQLLQQQQQQQQYQKQQQQNLNSILPQLTSSEMPLSGNQKLTPPLLKSASINPSLTNEDASTESLLTLPSVAFNPSSLSQALLGTEKVQRQQAGKAENVHRLSLENGPGPSSPLFGALSTLPVQDSYSTNKIASSHENAGLTSSRPLVSPPVADVFKATQFQSPMELSQFQFPMDLDSPARKTNWFGFPPAGVANKKSPFEEYKYDFNDKEGPFVMACKDLSDECGSYATEGGCDDFAPLSSIGEIKTMCKKSCGFCGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H269</accession>
    <name>A0A6S7H269_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="20">Solute carrier family 12 member 4 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">PACLA_8A033997</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="20">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>K(+)(in) + chloride(in) = K(+)(out) + chloride(out)</text>
            <dbReference type="Rhea" id="RHEA:72427"/>
            <dbReference type="ChEBI" id="CHEBI:17996"/>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the SLC12A transporter family. K/Cl co-transporter subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003327">
        <property type="protein sequence ID" value="CAB3998338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H269"/>
    <dbReference type="OrthoDB" id="2020542at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045202">
        <property type="term" value="C:synapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015379">
        <property type="term" value="F:potassium:chloride symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006884">
        <property type="term" value="P:cell volume homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007268">
        <property type="term" value="P:chemical synaptic transmission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055064">
        <property type="term" value="P:chloride ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055075">
        <property type="term" value="P:potassium ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990573">
        <property type="term" value="P:potassium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1740.10">
        <property type="entry name" value="Amino acid/polyamine transporter I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000076">
        <property type="entry name" value="KCL_cotranspt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018491">
        <property type="entry name" value="SLC12_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004842">
        <property type="entry name" value="SLC12A_fam"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00930">
        <property type="entry name" value="2a30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11827:SF73">
        <property type="entry name" value="KAZACHOC, ISOFORM G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11827">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03522">
        <property type="entry name" value="SLC12"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01081">
        <property type="entry name" value="KCLTRNSPORT"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0868">Chloride</keyword>
    <keyword evidence="12" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="11 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-0630">Potassium</keyword>
    <keyword evidence="4" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0769">Symport</keyword>
    <keyword evidence="6 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 17" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="89"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="119"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="157"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="180"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="220"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="246"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="357"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="395"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="420"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="461"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="539"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="572"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid permease/ SLC12A" evidence="18">
        <location>
            <begin position="89"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid permease/ SLC12A" evidence="18">
        <location>
            <begin position="351"/>
            <end position="654"/>
        </location>
    </feature>
    <feature type="domain" description="SLC12A transporter C-terminal" evidence="19">
        <location>
            <begin position="670"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="domain" description="SLC12A transporter C-terminal" evidence="19">
        <location>
            <begin position="795"/>
            <end position="1031"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="910"/>
            <end position="960"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00046331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00047825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF03522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="CAB3998338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1031" mass="113654" checksum="856DB1EF6F051A57" modified="2020-12-02" version="1">MSARFVVSKTDGGIPETIQENAEDTENVEIIVEDNKELDGNTNIRNDIFGGVNPEDECHAPLYNKQDEDTTTGTLPLYEGAKMGTLMGVYFPTIQNIFGVILFIRLSWIVGIAGAPEAFLIVLTCCCCTLLTSISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGILFYLGTTFASSMYTLGAIEILLTYIAPGMSLFGDVRSSGGATSSVMLNNMRVYGTILLFLLAAVVFIGVKVVNRCASLFLACVLLSILATYIGFFSVHTRSDTRICMLGDRLLASKAYGHCSKNDTNIKQLFESTSFWNTTCIKDIAGAPGLSSGVFDDNVDSQYLDKGEVYVGQKADNDQEIQSDSKTSFFILLAIFFPSVTGIMAGSNRSGDLKDAQRSIPKGTIAAILTTSTVCILLCLNYFTSFYITLTLITDLTSVLFFAGTIEGALLRDKFGQSIGSVLLVAEIAWPSKWVILIGSLLSTIGAGMQSLTGAPRLLQAISRDNLIPFLNLFSYASKNGEPTRALFLTVAIAEIGILVANLDAVAPIITMFFLMCYGFVNLACVLQSLLQTPNWRPRFQFYHWFASLIGLCLCLTLMFVSSWYYALVALILAAGIYKYIEFQGAKKEWGDGIRGLALSAARYGLLRLEEGAVHTKNWRPQLLVLCKLNEDLKPKTDNLFAFVGQLKAGRGLTIAASVLKGDILERNEEVDVAKACLDQLMKNNKVQGFSKVIVSKEINSGLSFLIQNNGLGGLTANSVLMAWPENWKEKDTWKKFVYTLRVISKRHEALLVAKNLVTYPDNSERLEGTVDVWWVVHDGGMMILLIFLLSQHKVWRQCNLRIFTVAQMQDNSVQMAKDLKTFVYQLRIKADVEVIEMVDTDIEAYTYERTLVMEQRSNMLKQMRLTRKESRKEVQAIVETHHRTKKGHTSTPQPPDTPVPSIQVHTSSSTDTSQQGGGGEPNKEHPSQMNLQRMDNAVKLNKLIKEKSSEAQLVLLNLPPPAKDESGDYHYMEFVEVMTEGLKRVLLVKGSGHEVITIYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HB10</accession>
    <name>A0A6S7HB10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057695</name>
        <name evidence="1" type="ORF">PACLA_8A068792</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004070">
        <property type="protein sequence ID" value="CAB4001376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020017224">
        <property type="protein sequence ID" value="CAB4030911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HB10"/>
    <dbReference type="OrthoDB" id="5969991at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13567" checksum="EBF5F9FE97B6E942" modified="2020-12-02" version="1">MAARNRLYIPNLEEFFNDFFQLIQQCSNCIQENSNGRLAEFLGRRLEEYQRSLRVMYGRLRDFRNNTPDLLNDFEQILDVVSRILKGTWNYFIAMILATSPENNALCTTVNHGLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HM48</accession>
    <name>A0A6S7HM48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002710">
        <property type="protein sequence ID" value="CAB3995687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HM48"/>
    <dbReference type="OrthoDB" id="8958638at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40552">
        <property type="entry name" value="AT05186P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40552:SF6">
        <property type="entry name" value="FI09606P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="32869" checksum="A5557BBC1A69FE1B" modified="2020-12-02" version="1" fragment="single">MGVSIETYRLRIGSHNNFVQARQSMNQMKGKFWNHMLVMFYLEIFYLPCLKNLVTKIESNNEVCMWYTQMVSYHVYVPLLLRLANDVEEKPGPINIYDIVDHSFTVRADFNQGNISMFGINAGKQCVAMSIYAIVYNEIKSVYIWDTPLMNMLLVNANNLYAIISQHIQKDFLLLTDVPEILSINNDTFNLECSDSFSGALWMENNNEPYVTLEHAFHEVFDAGNYKARLLTIQANTVAVLIPFPDVFKVFDSHSRDMHGMPAAMGYSVLVSIEGIQNLTRFFHNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HSR4</accession>
    <name>A0A6S7HSR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Fibronectin type 3 and ankyrin repeat domains 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087283</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005819">
        <property type="protein sequence ID" value="CAB4007519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HSR4"/>
    <dbReference type="OrthoDB" id="9995210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24183">
        <property type="entry name" value="FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24183:SF1">
        <property type="entry name" value="FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="341" mass="37562" checksum="8F10C1BEE0423625" modified="2020-12-02" version="1">MDQPDPPVVGRVTHCNVELFWDQERKHTEPDSEGRIKYCVQEEEGNSRRYHNVYCGYAKTCILYGLKENTTHRYRVQINLPTMSSPWSSATEVTTMSFPCSGAELHRAVLNWDVEKIKTILENYESLVDVPDKMGCSPLMVAAQKGYTSIVDILLNNGADVAFSNSSGKDSMMMACFTGHINVAITLKEHGASLSVRDQGGSNALHWAVDGGRASAVEWLLGNGAEVDELDTAEWTPLMRVATLDGKAEVAKVLLDGGANVNTHDKQGRSVLMAAALSGRLDLVQLLVEYGANTEEQNIHGNTALDFAESFGRYEVISYLQAVQPPEQEKQPHKAPEVNYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVS9</accession>
    <name>A0A6S7HVS9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A031473</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.49" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020006034">
        <property type="protein sequence ID" value="CAB4008143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HVS9"/>
    <dbReference type="OrthoDB" id="5987874at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="9">
        <location>
            <begin position="673"/>
            <end position="842"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="835"/>
            <end position="856"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="845"/>
            <end position="856"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4008143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="856" mass="98844" checksum="3A8F7781477EE0C8" modified="2020-12-02" version="1">MSLLMTSNDYANKIKTQRRRQYKESESDGSEDDERKTKSVEKKISCKFCGFEHWPDKRKCPAWGKTCNKCKRKNHFAKRCRKSAIYCIESEEEEISVVRIQAMKEKAVFAKILVNDVHVHFQVDCGASTNILLYKYVEKEKISPCDRTLVMWNGTKVKPLGTCVVRVVNLRNQKKYDVKFLIVKDDLTPLLGLKTTEEMRLLMIHKENFISAVFCKKTDVVDKHAEVFNDDLGRLPGIVHLEVDPNHKPVVLPARKIPVSVRDQFKVELQRSERLGVITPVEEPTKNDSTKSSWDWRCIADDILVYGTDEKDHDKNFERLLERCKEKSIKLTKDKLELKCKEVSFHGHLLTNEGLKVDPLRDLTHKESAWCWLEIHEKAWNEVKHLIAMTPVLAYYKPSESLEIQCDSSQTGLGVALMQNGHPIAYASRTLSETERRYAQIEKEMLAIIYAVEKFNDYTFCRKVTIYSDHKPLESILKKPLHRAPKRLQSMMIHLQKYDIEVKYEKGSNMFLADTLSRASVPGDGKSGPEFETINMMKYLPISDERLKGIQRETKSEESLQVLTTVIRQGWPEQKEYLPNVVAPYFNIRDEMSIQDGLVFTGERVVILQAMRSKMLGKVHNSHLGVNGCLNRAQECLYWPGMSNDNKNHVSTCEACREYERSQPKETLCSHEVPNRPWQRVGIDLFELERKHYLITADYFSDFVELDHLKNISSVQVIRKIKSYFARHGIPEQVITDNGPQFVAHDFQIFTKEWDFEHITCSPYHSQANGKAESAVKEAKKILRKSKKAKSDAFLAVLDHRNTPSTSMKSSPAQRLLNRRARTLLPTTAKLLQPQSIDSGTTVEKLAERKRQQAKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9Y6</accession>
    <name>A0A6S7I9Y6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004286</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007996">
        <property type="protein sequence ID" value="CAB4013723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9Y6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12910" checksum="85FF6E4B6242298D" modified="2020-12-02" version="1">MNDFDRLEGAEGGDEGVIDDTPIDEDDFLSGLDDDQRLDDAKTSSFREENKDDSYRKRKRQLDELSTYGKFDDIKVEYVRKLFQTEYRIDPADGQNSKELVSRLDLTKIYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IAM5</accession>
    <name>A0A6S7IAM5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Coatomer subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A030310</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasmic vesicle</location>
            <location evidence="2">COPI-coated vesicle membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008106">
        <property type="protein sequence ID" value="CAB4013993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IAM5"/>
    <dbReference type="OrthoDB" id="10261439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030126">
        <property type="term" value="C:COPI vesicle coat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006888">
        <property type="term" value="P:endoplasmic reticulum to Golgi vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006891">
        <property type="term" value="P:intra-Golgi vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011710">
        <property type="entry name" value="Coatomer_bsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016460">
        <property type="entry name" value="COPB1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029446">
        <property type="entry name" value="COPB1_appendage_platform_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10635">
        <property type="entry name" value="COATOMER SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10635:SF0">
        <property type="entry name" value="COATOMER SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07718">
        <property type="entry name" value="Coatamer_beta_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14806">
        <property type="entry name" value="Coatomer_b_Cpla"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0968">Cytoplasmic vesicle</keyword>
    <keyword evidence="6" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="8" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Coatomer beta subunit C-terminal" evidence="11">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="Coatomer beta subunit appendage platform" evidence="12">
        <location>
            <begin position="49"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF07718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF14806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4013993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="20840" checksum="0E0141CE82095A08" modified="2020-12-02" version="1" fragment="single">DLKLVEKPSPILLGPHDFSNIKASVKVASTENGIIFGNIVYDISGGSGDRNCVVLNDIHIDIMDYILPASCTDTEFRQMWAEFEWENKVTVNTNIKDLREYIDHLINCTNMKLLTPEKALSGDCGFMAANLYARSIFGEDALANVSIEIPVDEGPEAAVTGHIRIRAKSQGMALSLGDKINLSQKKQAAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IAR4</accession>
    <name>A0A6S7IAR4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">GTP cyclohydrolase 1 feedback regulatory protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">GTP cyclohydrolase I feedback regulatory protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A014637</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytosol</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GFRP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004562">
        <property type="protein sequence ID" value="CAB4003192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IAR4"/>
    <dbReference type="OrthoDB" id="64291at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031965">
        <property type="term" value="C:nuclear membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044549">
        <property type="term" value="F:GTP cyclohydrolase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009890">
        <property type="term" value="P:negative regulation of biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1410.10:FF:000001">
        <property type="entry name" value="GTP cyclohydrolase 1 feedback regulatory protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1410.10">
        <property type="entry name" value="GTP cyclohydrolase I feedback regulatory protein GFRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036717">
        <property type="entry name" value="GFRP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009112">
        <property type="entry name" value="GTP_CycHdrlase_I_reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16852">
        <property type="entry name" value="GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16852:SF2">
        <property type="entry name" value="GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06399">
        <property type="entry name" value="GFRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69761">
        <property type="entry name" value="GTP cyclohydrolase I feedback regulatory protein, GFRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4003192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11960" checksum="9BF088A42C25B00F" modified="2020-12-02" version="1" fragment="single">FNFDLATRMPYVLISTLIRLECGPTIVGDEWSDPELMEFLGAKLINDFGNNFKEYRSPDPPRKILNKLEGRGYHVIGMTGIGQTCIWTCYKQSDDNNQVENNGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IAZ4</accession>
    <name>A0A6S7IAZ4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">TMEM248/TMEM219 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A082086</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008500">
        <property type="protein sequence ID" value="CAB4014926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IAZ4"/>
    <dbReference type="OrthoDB" id="6329605at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039493">
        <property type="entry name" value="TMEM248/TMEM219"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039587">
        <property type="entry name" value="TMEM248/TMEM219_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16002:SF4">
        <property type="entry name" value="TMEM248_TMEM219 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16002">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 248-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14940">
        <property type="entry name" value="TMEM219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="TMEM248/TMEM219" evidence="5">
        <location>
            <begin position="13"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4014926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="34570" checksum="0163F8E3AC23DA70" modified="2020-12-02" version="1">MLLDAPRRYCRNLTGFVISKPPCVIFTICLCCLAIALFWLGYYVNNNEVVDPEAEKGWNNFLTSLSNVQFCIDKVDTKSKMTKLSNNTKTKRKLELPTLSSDLQQISIPLKIGVHIKDEDHYLHGNITHLTTLMDAPFVGSGIFRRTMNLTFSLSEVWNTEKKCIKGNKCKLPEGYFHSCVTVLAPREVLPEWKPETCNSSSFSSMTTMKALTRKSRHSKCESGAVIYFKHPVDLELREKLSVDERAKANLHLQVSSYFLFILVITSVIYGMLKGKPLKSKKVTFENYYGYYQAPPCYCPEMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBA9</accession>
    <name>A0A6S7IBA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon-like family member retr-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056861</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004020">
        <property type="protein sequence ID" value="CAB4001178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBA9"/>
    <dbReference type="OrthoDB" id="6148559at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="515" mass="58925" checksum="4516D39028D2F6E3" modified="2020-12-02" version="1">MNFSTTEQLSLSERWRRWKETMQLYLGLNMSKASEKEQCAAFRYVIGQDGRDIYNTMKFTEAQTDKIDVLFAKFDEYCEPRRNTIMERCKFNTRVQRDDETADQYVTELKLLAKNCNFGSLEDELIRDRVVYGIKSERVRERLLRERKLTLDKALEVCQINEQSEEQLKVLNDVQSVKAIGKYNKSGNYRSKLDANRRRDFKHNGGNKQEQVSCCGKCGKSHPAKECPAFGKKCFKCDKKNHFAKFCKSKKIHAVDKASTDDEPLFIGAVNSIHNEENVFKTLSIEGNEIKFKIDTGSQANIIPLPTFEKMKLKQTRLERPTAKLTSYTGDYLPVVGECNLKCNNKTLKFFVVKTGQVPIIGLKASQELNLIKIIMNVNNVIGQSAETIHEKFPKVFQGLGCLKNPYHIEVDPTITPVVSPLRSTPVALRERLRSSLDDMEEKGVVEKVDGPTEWVNSTVIIEKPNSDKLRICLDPRPLNEAIKREHFMMPAIEEITTRVAGARVFSKLDANHGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN48</accession>
    <name>A0A6S7IN48_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="11">5.6.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A069386</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="11"/>
    <dbReference type="EMBL" id="CACRXK020009998">
        <property type="protein sequence ID" value="CAB4018429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN48"/>
    <dbReference type="OrthoDB" id="5978603at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd17920">
        <property type="entry name" value="DEXHc_RecQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002464">
        <property type="entry name" value="DNA/RNA_helicase_DEAH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004589">
        <property type="entry name" value="DNA_helicase_ATP-dep_RecQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032284">
        <property type="entry name" value="RecQ_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018982">
        <property type="entry name" value="RQC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00614">
        <property type="entry name" value="recQ_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16124">
        <property type="entry name" value="RecQ_Zn_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09382">
        <property type="entry name" value="RQC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00690">
        <property type="entry name" value="DEAH_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 11 12" id="KW-0347">Helicase</keyword>
    <keyword evidence="4 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU364117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4018429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="611" mass="68832" checksum="01EF7D601EBF1C25" modified="2020-12-02" version="1">MCLILYYGGTLNPYSKGNKPCDVHVVREGLQAKFHCWYIDQKDKSTVSFQTECFFVKRDHRSNLTIPIDDVGTVQEPTAATEFHQLSEDPLLDIVQKVFHHESFRGMQRKVVDQILENNDTVSIMPTGAGKSMCYWIPGLATMGVTVVITPLVALLNDQVAKLRNYGVSVCYITSSMLPEERDMIFHKLTKEAPCFKLFYLTPESALSPQVTACFQQMAANKSLSRFVIDEAHCIDTWGQTFRPSYGCLSKLKQFGQPIAAFTGTATAQTQQRIVEKLGLVEPVILQCTCNRPNLFYKVMPKSGPHSKEELVCYVQDNFCNLCGIVYCFSTKDTVELAYIFKAKGLSAVYYHGQLDFFEKSDNAKAWLSGKALIMCATSAFGMGIDKSDVRFVIHLSLPKTLEEYYQEAGRAGRDGQNSQCVLMFRFEDRSKLVQLIASSESDEHREYLQYSLDAVVSYCMSLLCRRKLILEYFDENSTVDCEGSCDNCLKPPPVPKEYTTEAINVCLCVEEMCKINAKINARQLALTFKGSKSKQYVESKGFHSIPHYGIGQNIFKNDGDAIKFVQHLIINGVLAENIRGAVDRFTTPFITLGKKAASLRNKEINIFLRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRT1</accession>
    <name>A0A6S7IRT1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable ribosome biogenesis protein RLP24</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A079030</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the eukaryotic ribosomal protein eL24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011763">
        <property type="protein sequence ID" value="CAB4022014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRT1"/>
    <dbReference type="OrthoDB" id="10262490at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042273">
        <property type="term" value="P:ribosomal large subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00472">
        <property type="entry name" value="Ribosomal_L24e_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.170.20:FF:000001">
        <property type="entry name" value="probable ribosome biogenesis protein RLP24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.170.20">
        <property type="entry name" value="Ribosomal protein L24e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038630">
        <property type="entry name" value="L24e/L24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056366">
        <property type="entry name" value="Ribosomal_eL24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000988">
        <property type="entry name" value="Ribosomal_eL24-rel_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023442">
        <property type="entry name" value="Ribosomal_eL24_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011017">
        <property type="entry name" value="TRASH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10792">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10792:SF8">
        <property type="entry name" value="RIBOSOME BIOGENESIS PROTEIN RLP24-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01246">
        <property type="entry name" value="Ribosomal_L24e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00746">
        <property type="entry name" value="TRASH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01073">
        <property type="entry name" value="RIBOSOMAL_L24E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="TRASH" evidence="6">
        <location>
            <begin position="6"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00039784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4022014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="19054" checksum="C1CB877ED0E4EAF9" modified="2020-12-02" version="1">MRLEKCYFCSSTVWPGHGIAFVRNDCKVFRFCRAKCHKAFKRKRNPRKVRWTKAFRKAAGKELAVDATFDFEKKRDVPVRYSNESIKQTVAAMKRITEIQEKRQKQFVRNRLKTSKKLEEEADLKEVQTNINLIKPKPALKKSAGQKISQIMKDVEQMETDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IV72</accession>
    <name>A0A6S7IV72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Frizzled-4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A087264</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the G-protein coupled receptor Fz/Smo family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012385">
        <property type="protein sequence ID" value="CAB4023234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IV72"/>
    <dbReference type="OrthoDB" id="5959102at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042813">
        <property type="term" value="F:Wnt receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017147">
        <property type="term" value="F:Wnt-protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060070">
        <property type="term" value="P:canonical Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035567">
        <property type="term" value="P:non-canonical Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.2000.10">
        <property type="entry name" value="Frizzled cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015526">
        <property type="entry name" value="Frizzled/SFRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000539">
        <property type="entry name" value="Frizzled/Smoothened_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020067">
        <property type="entry name" value="Frizzled_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036790">
        <property type="entry name" value="Frizzled_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11309">
        <property type="entry name" value="FRIZZLED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11309:SF23">
        <property type="entry name" value="FRIZZLED-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01534">
        <property type="entry name" value="Frizzled"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01392">
        <property type="entry name" value="Fz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00489">
        <property type="entry name" value="FRIZZLED"/>
    </dbReference>
    <dbReference type="SMART" id="SM00063">
        <property type="entry name" value="FRI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01330">
        <property type="entry name" value="Frizzled"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63501">
        <property type="entry name" value="Frizzled cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50038">
        <property type="entry name" value="FZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4023234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="536" mass="61393" checksum="FC9CD441B507D641" modified="2020-12-02" version="1">MAIQTARFTSRLCLIYILISFPFVSSFGAKHKEKPKCEEMNVEQCRSLGYNVTGVPNIFGDTSQIDVERNLMTINELLTSTCAEPVRFFFCSMYAPMCSTATNSLIMSCGSLCEYVTKRCKPTAAKFEIPWLDAWNCTQFHWQNKKDEMCMPGDMYNYTTFKYPYSTTKTNSGNDKKSFKNSRNYIYLERTNSWVLLCDKDGIFRSDTKAFAELWMTIWSIVCFISTTVALLPFLVDTQRFHYPERAIMMLALCYNLYSIGFILRVIFGRKAVACASDDDSESYITQNELGNPLCAFVFLFLYFFGMAANIWWVILALTWFLAAGMKWNFEAIGSYTNLFHLVAWLLPVVKTVLVLIFRKVDGDELTGLCYVGNQDLLALTGFVLGPQFTYLIIGTLFLLAGFIALYRIRLTVHKERLHKIDKLDRFIARMGLFSAVSTVPVTCIIAAHFYEYSHREDWLYGRSEPNTKVLMLKICMALFVGVISGAWIWASKSCTAWKNFYMKTFKKQTTVQNGSNNNMALRNQATRAIQADTEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J0T8</accession>
    <name>A0A6S7J0T8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger BED domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068979</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012693">
        <property type="protein sequence ID" value="CAB4023807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J0T8"/>
    <dbReference type="OrthoDB" id="3062869at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47611:SF3">
        <property type="entry name" value="HAT C-TERMINAL DIMERISATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47611">
        <property type="entry name" value="HAT DIMERISATION DOMAIN, C-TERMINAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13770" checksum="211E2575C60DD072" modified="2020-12-02" version="1">MLASVSEITATSSSDVLRKEFDSKVADSVNHLNTRDADAMSETGLYFGEKLIPRDSEPLKWWHEHGKNYPKMSKLARKYLCATATSVPSERLFSKAGELVSHRRSSLKPKNVNMLLFLNQNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J168</accession>
    <name>A0A6S7J168_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001404</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007067">
        <property type="protein sequence ID" value="CAB4011202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J168"/>
    <dbReference type="OrthoDB" id="5966140at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35450">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35450:SF2">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="29854" checksum="3884D4C0D3A66414" modified="2020-12-02" version="1">MDKKTRKILTIYKCIHPRDDFDRLYWKRVEGGRGLKSVEDVVEIEKCSLGYYLTKTDEEFLQEVKIENIFKEVEDPKNRKKTIINRRKESFLEKKIHPVFWKGKKEIRDRAATGQCLKKGTLNDETEGMILPAQNQALRTKWMRHHIDKDFEISPTCRICGLANETISHIVSESHLLAQKDYKNVRHDKIATAIHRDLCKKYVFEYAEKCCNHHIDKESRVLENDEVNILWDFTIQTEKKLDYNKSDLVILT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1T4</accession>
    <name>A0A6S7J1T4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083878</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007148">
        <property type="protein sequence ID" value="CAB4011441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1T4"/>
    <dbReference type="OrthoDB" id="10068942at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="405"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="142"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="167"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="460" mass="51388" checksum="385FA961E7EFF73D" modified="2020-12-02" version="1">MDFATPAKFDVYDEPNNVAHRWERYVKSVKIYLAVKGINAAPQQRAILLHCAGSDVQDIAENNITDTGTDFATLTRKLTEYFAAQNNVVFERYQFRQRTQLEGEKVDSWHTRLRIKARIGTKDRSLEAAEMHAKAIEKSEISENNNPESSSDELSSLRQHRKPSDKRKKEPDWVERARKQEQQQTRKLPSHETCYRCGELGHRICDEARGKTCSRCGKRNHFAKACRSTQGPPAGNDEMSALHRGETAVEFAKYVSRDSSEEEIFTLQAPHPDINKNNARMSLLLNGFPTTLLVDSGGSVNVLPLHVYQKVKQLGSKPEPTSTCIYPYGSSQPLKILGVCHITVDAFGKKSSVEFVIVNHKGTTILGRDTSMEMGILHVGPPNHQTHGLHSLASEQENTATEIHTDAAASKVTSDPRYSPSPTTEKQNPIPESESLPTSLRQKNIISFPSIARSSWDVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J396</accession>
    <name>A0A6S7J396_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005898">
        <property type="protein sequence ID" value="CAB4007748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J396"/>
    <dbReference type="OrthoDB" id="5953865at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="227"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="228"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="298"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="314"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="327"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="337"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="349"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="387"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="533" mass="61041" checksum="C493DB355E294F42" modified="2020-12-02" version="1">MLSQIRQISDGNYNTVFVKNKEQKFNLDKEIHDLECWKQSRNHVYRKEERELLGHLDKLRQQQEYLHHLDEERSGHVRGSQTSSQRRHSIPGSIPLTQNASILSPQGRDSIQEMDPHTTPELQYQSRTSVHTPNATLPPVISGTDKRALHRAEAHTNICLICQLPRWSHGHPPGEAVCCCEEQDGAKLPTRRFTTTGREQQSFGHIGPPIQVGQRRHSLMMARLNEGQNEHKPHPPERGHTGKSQQHDHANTGQDHVHIHHHVHMHHDHGHHLHHHGHLHHGDHVNNHVNNHIRNTHGPHDSHASHGPHDLYHSHNSSNHGNAHQSGHTHHSGHAHHGGDARDHTNSGHAHHGGHARGHTNSGHRGSAHASDHHRHHQNGSHDETHTPSNSPRRYSRQSFNHYNPHISNHESIYPHPTGHQYHARRHSTAGSLGTNAQDSDTRTRDHELHWDRHQVCKLKGMITDPHYKEQLEVENGRTYPWSGLYPPNKTRVDDIEALKNCRYLRFSKLNLMSMKENPEEEVEVFEKESPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J555</accession>
    <name>A0A6S7J555_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013632">
        <property type="protein sequence ID" value="CAB4025487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J555"/>
    <dbReference type="OrthoDB" id="10225104at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="581" mass="66975" checksum="06B7237C848F3AB1" modified="2020-12-02" version="1">MAHQADGQYQARMFLQTLKSSAQGDNEEDLPVGHDIFFVIPWDTAHWMDLCMVDIRESSEFLRRFIKRANQFNTMYGRGKGHAEYQDVAKQNSLKAHVTKVYATTRFASSSFSQFDSIYESYEALCKAFSAIRETDDEDEEMKYMIKGRDFCLNLGGIIDILSKPMEMMIKSKSLDQYLWSVTKWWPKVKAILLAMKRDLTGQLSDIQKVTVRKELFPKLWKHYEDLNEEDSVGVQLLPGWMVVDTAEQVDSISKKKRKVIEWSERTVEDCLKDLVILSENVTDGMDSRYAKSVSEAAHILGRCLHLPDVVSFVQGLNGRFTARQVAARDVYGNAEFRSFYTYQAIYEYWKGPYSNCQSMYRLAKESLSALSNHAHRQFKDVVFQVSQVVWMDLGGCRKYWFPPERPEEGTHSQAPLKEYTVKSEDHEIDEKFVFTYDDGVYTARLDQATAFSTFYTNEAIYQAAGKEFCIALDVALAMSGSEAVVGSYYSVMNTQSKAEGQLNDTLTQRTNVDWCFLMPLQCVETIREVASLYLDGNKEIGLPRHQIPVFVDERGRALNKYALYRTDYFVLNEKDKDYKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J6V5</accession>
    <name>A0A6S7J6V5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013788">
        <property type="protein sequence ID" value="CAB4025731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J6V5"/>
    <dbReference type="OrthoDB" id="5976596at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="266" mass="29603" checksum="E7C555666B9CBC8E" modified="2020-12-02" version="1">MQTSSASVVQYIWIATKTFTIDQEHLKLSASATNMASTTVKDADTARVFMQRYGSHFPAGVHTLGGVLFRIVDAESESKKTTTVLAAKAANQLQGQISFGVLAGLGGIGVSISGENNNSSGTVEAHDEKTDDVFYTFSSQAMGPATTNPVTFNKMLANNSTWAIIDRGSPTAYIPIWEMIRNTDPVFEEVAKHLENTWRKDEEERMHRDADTIIEEPTNKVGTREITWHTKRVFQANYKEASRVESPYRSLFHLNPLFAYTRQCNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JC72</accession>
    <name>A0A6S7JC72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014264">
        <property type="protein sequence ID" value="CAB4026550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JC72"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11368" checksum="866E0B11DC86F12A" modified="2020-12-02" version="1">MIYADDTQLYIILKKHDSDTAIQRLEHCLHDIQAWCLQNKLVLNDGKTEAIYLHSAYAKSYPAPPSVYIGDSLIKIKTEVRDLGAIVDENLSEESCKFNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFF9</accession>
    <name>A0A6S7JFF9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NPC1 middle luminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022416</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017351">
        <property type="protein sequence ID" value="CAB4031085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFF9"/>
    <dbReference type="OrthoDB" id="6510177at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032934">
        <property type="term" value="F:sterol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015918">
        <property type="term" value="P:sterol transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053956">
        <property type="entry name" value="NPC1_MLD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45727">
        <property type="entry name" value="NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45727:SF2">
        <property type="entry name" value="NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22314">
        <property type="entry name" value="NPC1_MLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NPC1 middle luminal" evidence="1">
        <location>
            <begin position="11"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20555" checksum="5F5EE808515B3401" modified="2020-12-02" version="1">MNMSVKSNTGSENITTLADFCIKSSSNNNCMVVSPLQYWQNNETKLNKCISVVTNEQCSPSDAAYNYQVAAWGDHFQACTNNPYLTDDITELHLSCLSSYGDPVYPSQVLGGYDRKKYIDASLLFVTFAIKKHPNEIEIKKAKAWQEKFVEYVKNYDDQDLQLAYTSIDLPVRSLDTNIEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JFZ1</accession>
    <name>A0A6S7JFZ1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">COR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A088395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016346">
        <property type="protein sequence ID" value="CAB4029698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JFZ1"/>
    <dbReference type="OrthoDB" id="5953486at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032171">
        <property type="entry name" value="COR-A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16095">
        <property type="entry name" value="COR-A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="COR" evidence="2">
        <location>
            <begin position="73"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4029698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="43915" checksum="0A0276D3B6C92FE7" modified="2020-12-02" version="1" fragment="single">VDSEFLERAKEYCEKKFARMFGERLVRSLDDEILFAVENSDNHDDGGITKLKNTIANDVCVSRNFQFVNQELPLKWVHCEEEIIDYQKNPDSKQCLNISEVKILLENKCQETFTDSEFNSMLTFFHDSGLILLPGVMYDVNDESIGKDLVILSPQYLVDIMTRIHEVPGDRDLKRQFINEFQKLKDEGRVAFKLLEHVWKDKMEQVDILVELLSSFKLLYPLHTDSESEPQEGAEPLAAVDTSVKEFIIPCMLKEKSHESLSKRWLKTCEKWTDIEETEHKFVFDFGCFLPPPLFDYFLVHIYRHSCKTKGIRPILQRRSGIFSFSNKFLFCTRLVLKDCQIWVRARFVLMCFHCFAPHLLFDVSIILGPDVLMLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGW6</accession>
    <name>A0A6S7JGW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058657</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017798">
        <property type="protein sequence ID" value="CAB4031645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGW6"/>
    <dbReference type="OrthoDB" id="10520522at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="552" mass="62331" checksum="DF75C9A73B34844B" modified="2020-12-02" version="1" fragment="single">STPPSYILTKYLMSESTKRYHSPPTGATHGKKPPKRHMQENVKKTTRKSSFQTGTNEWSYDDISSLVEYVALYHAPDEASSTVWPTHKNEQFWNKCAEAVNCSNQQTNRTGGACRDKVRRFLKEKFETTEEAEDEYNICYFNVGKTSSTSNGCPAVSLQVHSDQFTQVQSPLLGFSPFFANDSDVVVAESRENTEDVDEDVSVTNNSVHVGRIIRGDPLQEKVNIAGPSSQTIRGMNLGGDFNKSAKIQGESQFMLLGLSLGVSSKKREAASHILIFMLSEEKHNFKPYAIPVWVVNYHSLIDKKMRELNEEMKSAMEDIGMVSEGFVSSDGEINSLRTQGSKRPVFVIQIMMDAKNEARRLSAKQIEKFFLPIEKDCTILPSNNHKAIPLEDVQFLAELMNGESKIKEHLYIPEVSEKTGEPQHHREDHNHVLKRITGSLRKGHIPNINLQAFVKAMHDPNTGLTYTPLTGKRKQSVGDAEKLLSPAVARWLKLNGYDEETRFVESVSNWQRQVMVVALVKRHAQSTTYQCWTIYWKIGCHGSEKIETSLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JKP0</accession>
    <name>A0A6S7JKP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A023867</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009426">
        <property type="protein sequence ID" value="CAB4017161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JKP0"/>
    <dbReference type="OrthoDB" id="5985995at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="314"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="93"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="753" mass="83673" checksum="A0276FF64083C2E9" modified="2020-12-02" version="1">MAENSEKYSETAQTGDISVAEETVLLGEDDDGDADSPEITMQGLAKMMNENMAAVASSFALLGSSLKRSRDESNSSSQTKKKQKTNNDPTIDDDQHTGDESDHSSHSDSSELRAIMAPKDETTTSKVEPLNLLSQIASDFDEDENTSGAITEKLAEIVNKRFSAPLGEEKLKEKLGQYLRPDNCAKLAVPKVNPEIWMKLNRPASRQDLHMASIQRAIVKAGTALTQLAEILVKTPSGTTGPDLGKLLTMNADAMALLGHATHQLSMHRRQAIKPFLNKEYATLCSPQGPVTEFLFGDELQSQLNNIKASNKIGNTMASESPRPPAKGKEPWKNKPKEYLKNKVSNFQAGRLSSYVEQWKLLTSDEFILDMVTGAHIELSSTPFQVKCQQKKMFSSKERLVIDSEIKSLLAKGVIVPSVTEPGEYISPIFITPKKDGWYRMILNLKQFNEHVACHHFKMDTLASAISMMKPLCFMASVDFKDAYYSVPIASTDQKCLKFIWDGQLYKFVCFPNGLACCPCMFTKLLKPVYANLRQQGYESSRYIDDSYLQGDDFADCVANVKVTVHMFDSLGLITHPEKSVLIPTQRLTYLGFILDSKEMKIYLTPEKTDRLIKLCVDILKKPKSTVQEIASLVGMMTASFPAVMYGPLHYRSIDMDKNEALKKSKGNFNSSMTLSSSSIEDLHWWAVSLPSAFNVVQHSEYEIVIYTDASTTGWGGVLGDLSKGGQWTLAESLYHINYLELLAVLMALSHIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JN65</accession>
    <name>A0A6S7JN65_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A066502</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020009733">
        <property type="protein sequence ID" value="CAB4017851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JN65"/>
    <dbReference type="OrthoDB" id="416437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="3">
        <location>
            <begin position="89"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="641"/>
            <end position="719"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="735"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4017851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="735" mass="85101" checksum="200EF0F2BD0CD3C8" modified="2020-12-02" version="1" fragment="single">MRQRQRKEGAAIQDAVNEVDPLDWPSTEGNLVNEFKTDGLATMAFPTLFPYGKGDPTNRAGQHGITLTEAFKHLMKFAERLVDGKFEWRFASRPRFPYWALNMKQRHQLLSQANVHLRQHPADANMTMEELKQMINSMSANQMVNRLQRYVSKVQGTNQYWYQRLQELLALIEQKACPTFFFTFSAADMHWPELQRLLQNDEGASRSERAQAVIDNPHLTDWFFMQRLQEFVRHWLNGVLDAEWHWYRFEYQARYVDWLVTNFNEELPDETWRIPDPHTSAVSATTVDNRHNDYHWLVNTVERHTRCSPAYCLKQKRVNLLAECRFGFPKPLQEETELSLELVNDDQVSSAFKKAMIQVAGDRDMAAQETAHMLLSLPLVGCTFSFVTISLDNSRKVNIDAENEGDGVLQKSALQEYAERTKLKNRYTGLSQLNLMQYVSQYTKVRGELTKRANPYIVRTFPKISANPAGPDFGKYCKYQLIKFKPWEGQPSNSWNNEDESDQMFINAYEFFLMTDEFAEENVFSFSDETDRVHDAQCDQTFENDPSDNQDDDDESEVDPDDEEEVDDWMLLCRINQDYGEAGNRMSDNEAVDWFEMVRAVPRDLLKECPGWIYSQRKEAEEHGQHFREDDQQCVIDPDTLNEKQRLAYDIITSQNGDNAEPVYMIVCGTAGTGKTYLISATKQVLATQCVVTATTGIAAFSINGQTLHSAAQLPIHEYRDLQVDSLQRLHLRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPD3</accession>
    <name>A0A6S7JPD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037228</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018804">
        <property type="protein sequence ID" value="CAB4032908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPD3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="53"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="539" mass="60345" checksum="B1D6620AD9032908" modified="2020-12-02" version="1" fragment="single">MLPINAPPINYSSPFGTQVTTNITEANTPLPTLPGTSTGFCLNTSAQTFIPSTTFHSESSSTSGQTHLSQQCQNPTNLSTGFPPFAMPMGSNLPRVASSYHSNHNQTRSNLSTSPMYTTPSGHQPTVPLINTRPSHQDSTIRLKRMALPTFPGLRKDWPEFKAVWKSMAESASYNKTALAHELKNSVKGEAKHRIKSVFVTKPEAYDIMWEKLECHYGDTTASVQAALEDLQRLKPVKEEDYKALVELVNEVESAYSQLEELNQLNTLTMRDVDNLTDLLPTHLKVDWRRKYRDSSSAEKLQPFTPLMKFLDRERSVVARLAENQHSKKRGNDNARGYSKTYHVERGAKHGQRTYYKCAFPTHRKDTINHTTEQCKEFQKLSISGKDGRYELLKQVNACFKCFGNHRKLNCPKKLPCSSCGSDQHHSLLCIPPKLPKDSGEKSKTGDDGNKELASYTVESDSMALYPIHQATISDSGRKVSVFCDGGSNASDITHRAAERIKAKKVKKLSLDVTTMGNVEKTYNTWQYEFPINTSAGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K094</accession>
    <name>A0A6S7K094_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074470</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023255">
        <property type="protein sequence ID" value="CAB4037587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K094"/>
    <dbReference type="OrthoDB" id="6155824at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="11418" checksum="44FA460D864A6A71" modified="2020-12-02" version="1">MESLCGMFAAMSISLEVPHNLVVDEVSYEVNNVCHFMNAVVVCETQRLLKEKCPACEVDHPSQRHDCIMLSDEEGWLLHGLEAVEPVIECESLRKQFLEAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K118</accession>
    <name>A0A6S7K118_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023619">
        <property type="protein sequence ID" value="CAB4037927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K118"/>
    <dbReference type="OrthoDB" id="6513731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="465" mass="52999" checksum="C62ECFFF41C3DDCB" modified="2020-12-02" version="1" fragment="single">MTRKVRSEYAPWITENIKRHIYHRDFLKKKAVKTGSSNLHDAYKRARNDLNRLIEKTKTEYFTSIINNTAKNPKEMWKTINKITNKKSKTTNITKIVVDDKVIEEPEVIVNTFNNFFNEIGTTLAQKLPESTRTPESYIKPENDSTFELQNVTEVEVFGIVSALSSSKATGYDRISPKLLKDSAGVITSSLTQIFNQSLLTGVFPDDFKVAIISPIFKSESKLECNNYRPISVLSVVAKVFEKLISNQLSTFLETRGILTQQQAGFRKKNSTETSLLNSTNKWFINMDKGYLNGVIFLDLKKAFDCVNHDILIRKLKLYGCSENTLCWFKSYLTNRRQMCKIGRTISQERVIRCGVPQGSTLGPLLFLLYVNDLPSCLSHSIASMFADDTNLTTSGKSIEDIQNQLNSDLENIHTWLLTNKLTLNKEKTEYMIISSRQRLAKIDDDPKISLDGIDIKRVKQAKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4A5</accession>
    <name>A0A6S7K4A5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monocarboxylate transporter 10-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086088</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026514">
        <property type="protein sequence ID" value="CAB4040245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4A5"/>
    <dbReference type="OrthoDB" id="6499973at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050327">
        <property type="entry name" value="Proton-linked_MCT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11360:SF251">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY (MFS) PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11360">
        <property type="entry name" value="MONOCARBOXYLATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="463" mass="52113" checksum="2E316CFC77AE486A" modified="2020-12-02" version="1">MVIPESTRKDSRQSWVYLSFVSVITFFVFGFLDSYGVLLVFLVQHFKEKNSKAAWVGSSAMFGCFFLYPISLRMRYKYGIRKTVLCAGALLVLVFILSPMVPNMALLFLTFSVPMAIACSILSCATFTTIRECFEKHEGVAFGIKSSMNALGTVLFSVFLPILLTKLDWQRTFLILIGISFITFLYALMYNDAGTTEDYRSERICSVSTVISLPTKEFSKNDLKIYWKLLKNKKLLVFLLAHTVFTIVVFMPPIFMVQFATNLGHHLSKSKWLMIVRGIVAVVVRSIAGRLGDVAQRRRKVRYLMLIVMILFSIATILCAFTKSFTWMMVYMSFVSLVDSIYWVVIPLHVSEVTDKSYSEHAFALFSCAGSFATLGGPPFLGWIYDTTGDSSPVMQTASAISAIAACLIALRLYVAKDNDPMSVVISEELVSNDDNVFIDEDFTTSTTVVYMTQHNMQYVTVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7S7</accession>
    <name>A0A6S7K7S7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein phosphatase</fullName>
            <ecNumber evidence="2">3.1.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A068141</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20629"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:47004"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the PP2C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.16" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020023623">
        <property type="protein sequence ID" value="CAB4037930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7S7"/>
    <dbReference type="OrthoDB" id="60843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039123">
        <property type="entry name" value="PPTC7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12320">
        <property type="entry name" value="PROTEIN PHOSPHATASE 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12320:SF1">
        <property type="entry name" value="PROTEIN PHOSPHATASE PTC7 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0464">Manganese</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU366020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4037930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="27230" checksum="E10C70606E622146" modified="2020-12-02" version="1" fragment="single">MALQSPLVYGRIFASQLRQFVPRLLRQEEQACRNTRRYTQLVTAYCGFSKDLAPSNKRFAFGEDAFFVAEDRARNVLGVADGVGGWRHYGIDPAVFSSALMENCKRLIERGLLENPTPVNIMKEGYHNISENKEPLFGSSTACIVVLDKKSSTLHSANLGDSGFLVIRKQDVVHSSLGQQHYFNTPYQLAIPPPDQEGNVIQDNLDSAEETSFAVEEGDAVVLGTDGLFDNLTEKQIIDEISKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K907</accession>
    <name>A0A6S7K907_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RING finger 151-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A073620</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013138">
        <property type="protein sequence ID" value="CAB4024623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K907"/>
    <dbReference type="OrthoDB" id="438726at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.610">
        <property type="entry name" value="LOTUS domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041966">
        <property type="entry name" value="LOTUS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4024623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="415" mass="46821" checksum="1A0772C4609E6213" modified="2020-12-02" version="1" fragment="single">MASYDTGYEDELFEHPVGPSSHCGICYNVVKNPVMCRHNEHLFCRACITRHLMNSQTCPLCLEPLAIETLSQPSRTIMNLLSELKIRCQFFNRGCETFIELGNLEKHIRVCGFAPAVCSNEGCRLEVNKQDLLRHETAVCELRRVQCHNCNDIRHEMDVVKVNLAAVNVKLNEVVEKLDRNEKKLDRNEKNLTRTVENIAVVVENVDAKIELVQGQLSKQKETNCQLKADNVTMKESLNNITKQLEKITQQTSHTVQAEKGKKGIAEAGGIDKEPKNVISGGTSKLSVGISNRMKGRTTTTVTSPMWPAASGVLNDVASVKWIKSEIFKAQSGLWATRLEHLYKEKFKKVLPVSFIQELKFRPDIATVEEPISGRYLLYAPRKQQPPPTKTNQRHQTQVNVNPDFALPYFLPDVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9V8</accession>
    <name>A0A6S7K9V8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072094</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026490">
        <property type="protein sequence ID" value="CAB4040231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9V8"/>
    <dbReference type="OrthoDB" id="7689536at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46177">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46177:SF1">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="95" mass="11822" checksum="C5368EC3657DBB5B" modified="2020-12-02" version="1" fragment="single">MEEEEEAIRYYFRRNYDYNAILEFLDKYHDIRMSKRTLLNRLRDYGLNRRNRNIDEDLLRDHINRELQGSGNLLGYRAMWRRLHLKYDINVPRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDH6</accession>
    <name>A0A6S7KDH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070369</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013690">
        <property type="protein sequence ID" value="CAB4025582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDH6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="33685" checksum="AB356129861D81FB" modified="2020-12-02" version="1">MFDVRISETSEDSENEKVSCNIFDVDENLTLDTIRYRILKETKELLKGDYRFTVSGVPLSLAQEQTVLVSEAITSQRGEPVIRYQLWYGEKQGPIYKSVPVETKWKDAQQINNVNEEQLGTSRKTTSEATSQSQKSALSMLKSPTTCSIKGIKLFSDKERETSIGKEKERRIFWNRRATELCKEEPKKADLYKRIHEDWRIHKTDSMTKEVNDLSQLRPSKSTLKKGTLQSNLARVESSKQNITDLREAIIKTDKHMVMELRKLRDELYSTQSELRKAQDALRKTTKKLNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJV0</accession>
    <name>A0A6S7KJV0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041932">
        <property type="protein sequence ID" value="CAB4045785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJV0"/>
    <dbReference type="OrthoDB" id="5244787at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23397" checksum="3E6844ED00B877D3" modified="2020-12-02" version="1" fragment="single">MDILFLDFAKAIDLVDHVILLRKLKDYGIAGNLYRWFSDYLHNRTQRVVVEGAASSWSPVTSGVPQGSILGSMLFLLFINDLPDVIPESTSKGLYADDTKLYREISTPEDCSQLQEALSCADVSSKDNNINFNPSKCKILTFSRRKTPFLFEYYLGSSELKRVNDEVDLGITVTSNLSWTTHINKIKVKANRLLGLLRRTCPLLTDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KMK4</accession>
    <name>A0A6S7KMK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A009447</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the folate receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039423">
        <property type="protein sequence ID" value="CAB4045428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KMK4"/>
    <dbReference type="OrthoDB" id="5959946at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009897">
        <property type="term" value="C:external side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004269">
        <property type="entry name" value="Folate_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018143">
        <property type="entry name" value="Folate_rcpt-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10517">
        <property type="entry name" value="FOLATE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10517:SF14">
        <property type="entry name" value="FOLATE RECEPTOR 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03024">
        <property type="entry name" value="Folate_rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4045428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13425" checksum="59657213A4FCC5D4" modified="2020-12-02" version="1" fragment="single">VPVCASECDAWYEACKSDRICVENVLEDYNQTENYVKKCPGGIHKCVNYTTMYGSGENLCNKMWGSSYKYVKKNGNNCMKFWFTPGSENPNADVLKEVVGSAPVSVLSSQLLLAVVYAVMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KPJ9</accession>
    <name>A0A6S7KPJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein LOC110044725</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A005641</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015803">
        <property type="protein sequence ID" value="CAB4028892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KPJ9"/>
    <dbReference type="OrthoDB" id="5979356at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31154">
        <property type="entry name" value="MEMBRANE TRANSPORTER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31154:SF4">
        <property type="entry name" value="MEMBRANE TRANSPORTER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4028892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="440" mass="49412" checksum="9224141E4D6D0212" modified="2020-12-02" version="1">MTQATPRRSPKEWFKKYFLEGQTLTSSQTKALENLDQNAPWYSKIIVKHRRVVGILIPFTIVHFIWWSCAIRYNYWELFPDRYFITITMVFGSLIAGMTSEGGSSVAFPVMTLAFQISPSIARDFSLMIQSVGMTAAAFTIFWMKIQLEWRSVIFCTTGGVLGMVIGLEFIDPNLTPPQKKMGFVSIWFAFAFALFLLNVYHKRVTFKIIPEFTTWKACTLLVTGVFGGIFSAISGSGLDVCSFSILTLLFRVSEKTATPTSVVLMAVNTVVGFYWRQVMMQAIHIDSYQYLAVCAPIVVLGAPLGSVIGSHFHRQVLASFNYLTDTVALISGFVIVKLDATLVGVSIGIIAFGFVFFGLLCYFGHRLMGKILKDWEDLGNNERVTVTDGSSTRCKKDLNEYDEEHSQGMSYIVENRGVIETHEVNSNLEKSDSCYTTHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LC30</accession>
    <name>A0A6S7LC30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021739">
        <property type="protein sequence ID" value="CAB4036143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LC30"/>
    <dbReference type="OrthoDB" id="5980364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="26026" checksum="4E9FAF05C25EDFC6" modified="2020-12-02" version="1">MASIFTNILSSTVGLLVNKARDSAADKLKNGDVTDAKIRELVVRELNDVKTKLDGLSRKDLLSSYSFLKQGIDMLNVSLNKSMDEQKDVDKPTDEQAASTMSSSVQSGILNEALALSQAMEKLNIVSDGHFECAKERFKDARRRATDAFSNQALSIEDRLMAAKLHIVATILECLESPEHAITSCLSFLKELHGLEAIADIFSVYLNRGFMSRLNKAQRVECVKSVMFHIRLGNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTL6</accession>
    <name>A0A6S7LTL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Splicing factor, suppressor of white-apricot homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010836</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030876">
        <property type="protein sequence ID" value="CAB4042809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTL6"/>
    <dbReference type="OrthoDB" id="5988368at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.790">
        <property type="entry name" value="Surp module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000061">
        <property type="entry name" value="Surp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035967">
        <property type="entry name" value="SWAP/Surp_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01805">
        <property type="entry name" value="Surp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109905">
        <property type="entry name" value="Surp module (SWAP domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50128">
        <property type="entry name" value="SURP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19151" checksum="DC632968C570BCFF" modified="2020-12-02" version="1" fragment="single">EESDSDEEMELHPLLTASLRAPITSKKKDVAPLEPPPLPPGWTAVNPDDTTGTNSFVSKADTFFADMNMTGQSMSYPPGYPGYPYTHPGITPPPPPPPGIEPQTGNGNPQFPPMFYSNNPAPSLAGPILSYPGTEMTTGPPIIPPPPDLKPICDKLAEYVARNGSQFEENIRAKNDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8S8</accession>
    <name>A0A7D9D8S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc transporter ZIP8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A037560</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ZIP transporter (TC 2.A.5) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000222">
        <property type="protein sequence ID" value="CAB3979721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8S8"/>
    <dbReference type="OrthoDB" id="200954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140410">
        <property type="term" value="F:monoatomic cation:bicarbonate symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005385">
        <property type="term" value="F:zinc ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030003">
        <property type="term" value="P:intracellular monoatomic cation homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071578">
        <property type="term" value="P:zinc ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003689">
        <property type="entry name" value="ZIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050799">
        <property type="entry name" value="ZIP_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12191">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12191:SF37">
        <property type="entry name" value="ZINC TRANSPORTER FOI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02535">
        <property type="entry name" value="Zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3979721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="404" mass="44903" checksum="53B842EB1709F42E" modified="2020-12-02" version="1">MSAWLCGWRFFLFVSLIVTANTATVPVEKLLKKFGTNDTLDAAQTTKLFESMGISNWNYNGSKEESCSSSAYFQRTYSNNGGTVNKTGLANLCPAVLYELSKDACQRQPKQEEEEGAEKEDVRRAWGFGFLFVTVISLLSLLGAILVPFMQKKIFQTVLMAMVSLAVGVLSGGGIFHLIPHALKLGTKDLSHMWKLVMVAVGIYMFFLLECTMKMYLHLKTLNSADSNTNETKVNPHANDGHGHSHYMFEAPETFPEIADEKKPNNLDLTTPGPEKKKIATVAWMIIIGDGLHNFVDGIAIGVSCSTSVLSGLSTSLAICCEELPHELVQDNKITDSGVVELGISDVDHHLVYLCRKVSIPKETPKIIFSRQFKNFNVNQFKEDLRNNINTNIITDDPNILWHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DP63</accession>
    <name>A0A7D9DP63_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TNF receptor-associated factor 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A085372</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001496">
        <property type="protein sequence ID" value="CAB3989492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DP63"/>
    <dbReference type="OrthoDB" id="5966397at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005164">
        <property type="term" value="F:tumor necrosis factor receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031625">
        <property type="term" value="F:ubiquitin protein ligase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000179">
        <property type="entry name" value="TNF receptor-associated factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012227">
        <property type="entry name" value="TNF_rcpt-assoc_TRAF_met"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049342">
        <property type="entry name" value="TRAF1-6_MATH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22486">
        <property type="entry name" value="MATH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21355">
        <property type="entry name" value="TRAF-mep_MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015614">
        <property type="entry name" value="TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3989492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="462" mass="52783" checksum="F76813D7AC3F3134" modified="2020-12-02" version="1">MPGYEVQFADPLDKSFECPICWNALRSPVQVTPCGHRVCQSCLEPIMRNRNPKCPLDNLPLNGEKVFPDNGCLRQILSLKILCKRNSKGCEWTGPLCEAEDHENECGYVDIECPNSCGEMIKKRDIESHDNECLLREEACEYCNAGVTASQQNLHLETCPKLPVDCPWDCGARNMTRDMLVVHKLHECSVSVLECKYSDAGCKFTAKRDEMEKHLETDTKEHLALVHEKLLRQQKCLEAQNESIQLQKEHIKLQRDALSTYKKDLVELRSKFADGELIWKISQFNQKMKDAKTQRSPELLVSEPFYTHKNGYKMCAGLWVNGFGSGKGKYISVGLQVKYEIAYDIFMIVFERLSAQKVERCQDVDGTVIVGEYDDILSWPVNPTFTFTLLDQRGNTKERRHITASFDPHWIARPTPERQLGKGARKFVLQSVACGDTYCKNDAIFIRFVVNVAHRGRDFVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DQX8</accession>
    <name>A0A7D9DQX8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioredoxin domain-containing 16-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053424</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001973">
        <property type="protein sequence ID" value="CAB3992069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DQX8"/>
    <dbReference type="OrthoDB" id="427280at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02961">
        <property type="entry name" value="PDI_a_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02981">
        <property type="entry name" value="PDI_b_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040090">
        <property type="entry name" value="TXNDC16"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22699">
        <property type="entry name" value="THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22699:SF1">
        <property type="entry name" value="THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13848">
        <property type="entry name" value="Thioredoxin_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="606"/>
            <end position="681"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="606"/>
            <end position="633"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="650"/>
            <end position="681"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="681" mass="77712" checksum="D7CE02D651C1C669" modified="2020-12-02" version="1">MEVAAYVDVFLSHEKSLKTDNLVDFVYDLIANPSGIYGSLVQSRSLTANFPQEYLTLLNDLETDYLLVAFCKPSIEVCADFSYDYQRLSRTYDRHFRRSSTRERNIKFSIFYNEQDMDPQFGVKTYPTVRLHKKGEPITKFTLFHGSPDYYDMIDFVEKQIGERDVYILPASGLDYIELENFHTGSEQSVDQIDDVHNAEEAEDYSDEDRPPEETEDDEVAAAGYEIFYTRAVNDSHIPKLNDTSFNTTLKQYDISVVFFFLPWDARSQAFSPSYAAAAKKLVEPDGSETTIGVLQVNCFDWEDVCAKENIKLYPTVRFYRKKQAPMDYRGVWDESSLMKTVKLLQASFPLKLTSDGEVVGFQEGKYPMTSILYTDVSVLGLFSIESSDYVSTFNAAARAMEGQFLFGYATGKVASDAAARLNVRVPSVVLIKRDDPLQSKVVFEGEYAEEAIIQFVKHSSLLQYGELTPLNFPTYFSKGQPFLIAFINKDNDEINSLITDIVKSAETDGMNFCWVDISVKVNRDILEAYTREDNDKSEITSAIVLVNHQKGATYTYKGELQKESLVSWIKACLSGSQEFTGKLETSEWKPRLEGYDFLAKIKEEAENDEGDDDKSSDPWEDSESTENDDDGDEGKSHEYQSETNPHNARFHDAFHAKKQSRLDQRRRIMQKPVHEAHTEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DUY8</accession>
    <name>A0A7D9DUY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Voltage-dependent L-type calcium channel subunit alpha-1D-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A061246</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 12">Membrane</location>
            <topology evidence="1 12">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002504">
        <property type="protein sequence ID" value="CAB3994632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DUY8"/>
    <dbReference type="OrthoDB" id="5980718at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005891">
        <property type="term" value="C:voltage-gated calcium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008331">
        <property type="term" value="F:high voltage-gated calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098703">
        <property type="term" value="P:calcium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000007">
        <property type="entry name" value="Voltage-dependent L-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000095">
        <property type="entry name" value="Voltage-gated Ca2+ channel, alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050599">
        <property type="entry name" value="VDCC_alpha-1_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002077">
        <property type="entry name" value="VDCCAlpha1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45628">
        <property type="entry name" value="VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45628:SF1">
        <property type="entry name" value="VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE D SUBUNIT ALPHA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00167">
        <property type="entry name" value="CACHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0106">Calcium</keyword>
    <keyword evidence="4 12" id="KW-0107">Calcium channel</keyword>
    <keyword evidence="3 12" id="KW-0109">Calcium transport</keyword>
    <keyword evidence="11" id="KW-0407">Ion channel</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="7 12" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3994632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="333" mass="36893" checksum="2493A8956319C2A8" modified="2020-12-02" version="1" fragment="single">MATNGGISTSAKVPWLNMEHGGASPQRTPSRRPKKSTAVSSVRPRRALLCLELHHPLRHYAINIVEWKPFDILILITIFANCAALAAYQPLPREDSSTINDNLEMAEYFFVTIFTIESFLKIIAYGFLFHPGAYLRNPWNILDFVIVIIGLMTIALGSTWGNVKALRAFRVLRPLRLVSGVPSLQVVLNSILKAMLPLFHIALLVVFVVIIYAIIGLELFLGKMHQTCYNNSTMTMSSDEPVPCSPSGPGYHCNIGEVCQGPWDGPNSGITNFDNIGLACLTVFQCITLEGWTDVMYSINNVSGSAWPWIYFVTLIIWGSFFVLNLILGVLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E6C4</accession>
    <name>A0A7D9E6C4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein uL23m</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">39S ribosomal protein L23, mitochondrial</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A029843</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL23 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003994">
        <property type="protein sequence ID" value="CAB4001069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E6C4"/>
    <dbReference type="OrthoDB" id="275582at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005762">
        <property type="term" value="C:mitochondrial large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032543">
        <property type="term" value="P:mitochondrial translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013025">
        <property type="entry name" value="Ribosomal_uL23-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_uL23/eL15/eS24_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12059:SF5">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL23M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12059">
        <property type="entry name" value="RIBOSOMAL PROTEIN L23-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00276">
        <property type="entry name" value="Ribosomal_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="Ribosomal proteins S24e, L23 and L15e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00039977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00041375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4001069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15842" checksum="59766313874B99CA" modified="2020-12-02" version="1">MAYRNVVRNPRLQARIFLPEWFLKCVRPTKEVPDNVAVFHVPMEMSRLDVKNYLQSIYQINVSKVNVRIQTGKAERVMMKNGAVKLQRHPDIKVAYVTMADTKFKFPELFVKSDKKSPLEDLPTDKKPEEFRWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELT6</accession>
    <name>A0A7D9ELT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anion transporter 2, chloroplastic</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007903">
        <property type="protein sequence ID" value="CAB4013482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELT6"/>
    <dbReference type="OrthoDB" id="5954791at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="138"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="374" mass="43170" checksum="C3E8F3E4EC229519" modified="2020-12-02" version="1">MFNGQPQLTIKALKNKKFNNSCLINEKTFNTGSIADCLEHCLEDCRCQSFQICGETKCQLCSSHKELKNSSLLHDNDTCIYAMYEMRHAQKFDNHCSTISCPKKYNCCQQQSDLCPSNKICKPFNSPKKPWKRFTCECRDGYRGNNCDKPIRSCGGYRSQKSGMYKVRSSVNDLLYEVYCHFDSDGAWTLVQSFSFANHTIENSVFRKPLSEDHPVSQNAVTWSGYRLSRTRMQFINQNSDLLRFTCAFEDGHDVDQTDYLQMSLEQLGDEKDITANNPNIVMSAYRGKIKETDLYLEGCKIKLHQKDDEVLHVHIDKNGNSCERFGDQKPDNSECVKFEYFSYFSDKDCLLPTHRCTQNEKSTSQLWFGKKPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPI5</accession>
    <name>A0A7D9EPI5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008001">
        <property type="protein sequence ID" value="CAB4013741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPI5"/>
    <dbReference type="OrthoDB" id="6012109at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="245"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30887" checksum="FD42673DBA338C69" modified="2020-12-02" version="1">MPACIKIENNGSVVAVIPAFELTRNLEELRNKIDEDELLEGKFTFTGVTYQEEKDTAVEDVVLFDDEHCESSNKKVVKIQVTSAEECEVNDICTGYTAKTPSSSNDEVEKWKSAFRYQSPWEVKRIKIYSDDEVRKARGMRSEYLKFWNKRVKELCRQIPNASRKKITSQVDEEWRKEQNNILSAEASILEKIGGKSPEGLKPGTLHTNMKAIDDARSDLEATEAMLANKDISAVEKQRLIANQKRARSHLKRAQESMRKNLNAKKQKTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPL6</accession>
    <name>A0A7D9EPL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065558</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007442">
        <property type="protein sequence ID" value="CAB4012255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPL6"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="165" mass="19429" checksum="4CE9DCDC18408376" modified="2020-12-02" version="1">MAIEKCQRDFTRIIHGMGFLSYSERLQKLGLTTLLERRIRGDLIEAYKIINGHVNYGHQMFNHNLHYSTRNLCNVSSCRTRFALDCFSVRVIKFWNNLPNSVKYAPSVNAFKAGLDDLKSYNPDSRHGYWYLSQEIFNRIPDKNDHVTYLKLHPEVAMRRHISCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZ37</accession>
    <name>A0A7D9EZ37_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Poly(RC)-binding 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028951</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010341">
        <property type="protein sequence ID" value="CAB4019194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZ37"/>
    <dbReference type="OrthoDB" id="442947at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="entry name" value="K Homology domain, type 1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10288">
        <property type="entry name" value="KH DOMAIN CONTAINING RNA BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50084">
        <property type="entry name" value="KH_TYPE_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="31341" checksum="78F03E15DD794A7F" modified="2020-12-02" version="1" fragment="single">EAGTLIGKGGVTIQNLRKSSDAIINISDNASRERVVSVTGGVNNIICAFKLIVQTLEENLLNNDRSSYTPLTFQLLVPSGQCGSLIGSGGSKIKLIREKSGAHIQIGTDPLPMSSERMITLSGKPANINSCMKSLCEIMVEYPVRGHVDPYYPQNYMSSRSSRSERDYYERDYYDVPRSREPLRYSSRNASSRRRKRSEDYDEYMTETMSIPSRYAGGVIGKRGVKISEIRNKSGAAIKIADETGGSGERIVTISGNPEAVGMAQFLIKTRVKYEEKRSSEKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HA71</accession>
    <name>A0A7D9HA71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A053290</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000054">
        <property type="protein sequence ID" value="CAB3977542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="432281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="21"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000533">
        <property type="entry name" value="Tropomyosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049:SF1">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00261">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="16"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="112"/>
            <end position="1418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1425"/>
            <end position="1444"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1466"/>
            <end position="2584"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="2604"/>
            <end position="2630"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="2963"/>
            <end position="3124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="3144"/>
            <end position="3519"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="2802"/>
            <end position="2829"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="112"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="653"/>
            <end position="814"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="827"/>
            <end position="1022"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1032"/>
            <end position="1246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1254"/>
            <end position="1396"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1405"/>
            <end position="1418"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1466"/>
            <end position="1571"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1580"/>
            <end position="1718"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1725"/>
            <end position="1977"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1985"/>
            <end position="2584"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="3144"/>
            <end position="3515"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3977542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="3539" mass="397779" checksum="6D673465C64FEA3D" modified="2020-12-02" version="1">MVPHTEDKVPHAEDKVPHAEDKVPHAEDKVPHTEDKVPQAEDKVPNAEVKVRHSEDKVPHAADKVPYAEDKVPHTEDKVHHTEDRVPRTENKVTHAEDKVLHAEDMVLHTEDKVPHAEGKVPHAEDRVPQAEDKVPHTEDKVPQAEDNVPHPEDKVPGGEDKVPHAEDKVPQAEDKVPHTEDKVPHIEDKVSHTEGKVPHAEEKVPHAEDKVPHAEDKGPHAEDKVPHDEVKVPHAKDKVPHTEDKVPHTEDKVPHAEDKVPHAEDKVPHAEDKVPHAEDKVPHDEFKVPHAKDKVPHTEDKVPHAEDKVPHAEDKVPHAEDKVPHTVDNVPHTEDKVPHIEDKVPHTEDKVPHTEDKVPHTEDKVPHTEDKVHHTEDKVPQAEDMEPHTEDKVPHTEDNVPQHEDKVPGGEDKVPHAVDKVPYAEDKVPHTEDKFPQAEDKVSHTDDKVPHTEDKVPQAEDKVPHAEDKVPHTEDKVHHTEDKVPHAEDMVPHTEDEVPHAEDNVPHAEDKVPHTEDKVPQAEDNVPHPEGKVAGGEEKVPHAVDKVPHAEDKVPHAEDKVPHAEDKAPHAEDKVPHAEDKVPHVADKVPHAADKVPDAEDKVTHTEDKVYHTEDKIPHAEDMASHTEEKVPHNEDNVPQPEDKVPGGQGPHTEDNVPHAEDKVPHADDKVLQTEDKVPQAEDKVRHSEDRVPHTEDEVPQAEDKVPRAEDKVTHTEDQVSYIEDKVPHIEDKVPHTEDKVPHAEDKVPHIEDKVPHTEDKIPHDEDKVPDAQDKVPHTEDKGPHAENKVPHGEEKVPHAEDKVSHTEDKVPQAEDNVPHPQHKVPGGEDKVSRTVDKVPHVEDKVPHAEDKFPQAEDKVSHTVDKVPHTEDKVRQAEDKVPHAEDKVTHTEDKVHHTEDKVPHAEDMVPHTEDEVPHTEDKVPHTEDKVAQAADKVSHTEDKDKVSQAEDKVSHSEDKVPHTEDKVPQAEDKVPHAEDKVTHTEDKVHHTEDKVPHAEDMVPHTEDEVPHTEDKVPHTENKVAQAADKVPGGEDKVPLAVDKIPHAEDKVPRAEDKVPQAEEKVSHAAEKVSHAEGKVRHAEDKVPHAEDKVPHAEDKVPHAEDKVPHGEDKVPHAEDRFPHAEDKAPHAEDKVPHTENKVPHTEYKVPHAEEKVPHTEDKVTHAEDKVPHGEDKVLYAEDTVPHAEDKVPHAEDKVPHAEDKVPQAEDKVPHDEDKVPHTEDKMPHTEDKVPHTEDKVPHAEHMVPQTEDNVPHAEDKVPHAEDKVPHSEDRVPHTEDKVPHAEDKVPHVADKVPHAEDKVPQAEDKVPHAEDKVPHTEDKVRQAEDKVPHAEDKVPHTEDKVPQAEDNVPHPEHKIPGGEDKVPHAVDKVPHAEDKVPHAEDKVPQAEDKVPQAENNVPFPEDKVPGGENKVPHAVDKVPHAEDKVPHAEDKVPQAEDKVPHAEDKFPHAQYKAPHVADKVPHAADKVPHAEDKVPHTEDKFPQAEDKLTHTEFKVPHTEDKVPHTEDKVPHAEDKVPHAEDKVSHSEDKVPHTVDKVPQAEDKVPHAEDRGPHAEYKVPHTEDKVPQAENNVPFPEDKAPGCEDKVPHAVDKVPHAADKVPHAEEKVTHTEDKVPHTEDKVPHTENKVPHPEDNVPHAEDKVPHAEDNVPHSEGKVRQAEDKVPHAEDKVPHTEDKEPHTENKVRHAEDNLPHAEEKEPHTENKVPHTEDKVPHAQNKVPHAEDKVPLGEDKVPHAEDKVRHAEDKVPHAEDKVHHTEDKVPHTEDKVPHAEENVPHAEDKVSHTQDKLPHGEVKVPQAEDKVPHAEDKVPQAEDNVPHPEHKVPGGEENVPRALDKVPHAEDKVPHAEDKVPQAEDKVPHADDKVPHAEDKVPHTEDKVPHNEDKVSHAEDNVPHAEDKVPHAEDKVPHTEGKVRQAEDKVPHAEDKVPHTEDKVPHTENKVRHAEDNVPHAEDKVPHTENKVPHTEDKVPHAQNKVPHAKEKVPHAEDKVPHAEDKVPHAEDKVHHAEDKVPHTEDKVPHAEENVPHAEDKVSHTEDKLPHGEAKVPHAENKVPHTEDKVPQAEDNVPHSEHKVSGGEENVPRALDKVPHAEDKVTHAEDKVPQAEDKVPGAVDKVPHAEDKVPHAEEKVPHTEDKVPHTEHKVPQGEDKVPHAEDKVPHVADKLPDVADKVPHAEDKVPHTEDKFPQAEDKVSHTGDKIPHTADKVPQAEDKVPHAEIKVTHSEDKVPHTEDKVPQTEDKVPHIEDKVPHSEDKVPHAEDMVPDTDDKVPHAEDKVPHIEDKVPHTEDKVPHAEDKVPHAEDKVPHPEDKIPQAEEKLPHTEDKVPRTDDKVPHADDKVPHAEDKVPHTEDKVPQTEDKVLHAEDMVPHAEDKVPHAEEKVPHAEDKVPHAEDKVPHAEDKVPHTDDKVPQAEDKVPHAEHKVPDTEDKVPHTENKAPHADDKVPHAEDKVPHTEDKVPHPEDKVPHSEDTVHHTEDTVPHTEDKIPHAEDKVPHAEDAVPHTEDKVSHAEDKARHAEDKIPHAADGVPHTEDKVPHTEDKVPHTEDKVPHTEDKVPHTEDKVPHTEDKVPHTEDKVAHAEDKVLHAEDMVPHTEDKVPHAENKVPHPKDKVPHAEDKVPQAEDKQKLNLNGEWVSPGGDKKLFNDGYISISWRKNKKALLIDGDDRDKFKSKLCRMICANDFNKGNMCEETTTVNVECRSTSPMRAPLSELSTEVEGIKLDVTIAEREIEVNKSAISKVESNLHEINTGYEDLRLQFDEYKKITEVLIQRDTFQHSTTFEYSNVIDKVNPSETKRYQDEVSRLKKDISSEREKCKRLEADLSILIKGRSCEEISFDRDGSAKGAKRYSFEYGQAGNCEDNSESTLAALEDCISDVRTWLLSHKLMFKDSKTEFLVIGTPQQLLKINIESVNVGGVQIKPVDSVRNLGSWFDKHMSMSVHEKVPYAEDKIPQAEEKLPHTEDKVPHTEDKVPHADDKVPHAEDKVPHTEEKVPHTEDKVPHPEDKVPHSEDTVHHTEDTVPHTEDKIPHAEDKVPHAEDKVPHTEDEVPHAEDKARHAEDKIPHAADEVPYAEDKVPHTEDKVPHTEDKVPHTEDKVPHTEDKVPHTDDKVPHTEDKVAHAEDKVLHAEDMVPHTEDKVPHAEEKVPHAEDKVPHAEDKVPHAEDKVPHAEDKFPQAEDKVPHAEHKVPHTDDKVPHTENKVPHAEDKVPRAEDKVPHTEDKVPHTEDKVPHAEDKVPHGENKVPHAENKVPHAEDKVPHAEDKVPQAEDKVPHAEHKVPHAEEKVAHTDDKLPHTEDKVPHAEDNVPQAEDKVPHAEDKVPHAEDKVSHAEDKVPHLEDKVHHAEDKVPHAEEKKKVPQAEDKVPHIEDKVPHTEEKVPHAEDKVPHAEDKVPHAEDKVPQAEDKVPHAEHKVPHAEEKDKVAHTDDKLPHTEDKVPHAEDNVPQAEDKVPHAEDKVPHAEDKVSHAEDKVPHLKDKVPHAEDKVPHTEDKVPHTEEKVPHPEERANLQPQEGRFLLVEVLMKPLIINSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HAU7</accession>
    <name>A0A7D9HAU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A053304</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000254">
        <property type="protein sequence ID" value="CAB3980064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HAU7"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3980064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="594" mass="67376" checksum="90D32A90F15E1102" modified="2020-12-02" version="1">MTWTKPGEPISYASPLVITPKGDDDVRITADFRVANKGASRTRIVPGLRVDELSATFGDCKVFSHLDMNNGYHQMKVDEDSKKYLVVTTPWGNLKHETLAQGWITSQDEFDRRINEILAGIPHVKSNRDDCLIGVKDRNEHNRTLDLVLTRLQEHGLTLRLEKCEFGKEELSSMVSDLREKESNHRRRNFAQIAAPLRQLTKSTSTFHWGPIEQEAFDSLKSSLTEQTTLSYFVPERIYVDAGKKTEKSSNVPGGLCAILCQQGGDGQYGQTELEAAAIKFACADALYKYLVGAPKFEIFTDCKPLVHLFNNPTSRAPLRIERQILAIQGLDYVVKYQKGAENIAYYGSRHLTRRHDDIPMVKSVNELEGLRTFVSEDNEYLSRMAKDDNDYQFLKEVIQRNLWKKHGKDPRVSRFLGVASDLSVVGEIILCKDKVIPPLSSRRRFVDKAHKIGHSGETRTLKLLQEKIWFPGIAKLCKEAVQNCQSCQVTHDRTYDEPLQSTPLQPGPWHTISVDFKGPFKDGTYALVGYDLYSRYPVGSYCRSTVFSCVKPILDSWFSTFGTVELKSDRGPPFNGHELSAYMLAREDSFTNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCS6</accession>
    <name>A0A7D9HCS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044380</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000209">
        <property type="protein sequence ID" value="CAB3979571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCS6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12031" checksum="FBA0DA3C5B9FFBF5" modified="2020-12-02" version="1">MLADPDASVMSKAEAQNCLDKSQHIVTHEMFPLSEFRDVQHNLAQSDFFYRYSKSDNPRMKKALKFAKRAQQSANDAGLPEMKLYAENRVALIQNEIDNCPRNNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HHU4</accession>
    <name>A0A7D9HHU4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A034920</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000602">
        <property type="protein sequence ID" value="CAB3983333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22541">
        <property type="entry name" value="SP5_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF4">
        <property type="entry name" value="PEPTIDASE S1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="267"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="439"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1500"/>
            <end position="1521"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="220"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="288"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="324"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="350"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1503"/>
            <end position="1513"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3983333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1592" mass="180399" checksum="53BDB1A84B0BDF20" modified="2020-12-02" version="1" fragment="single">MASKTQSNEPETQLVEDEAPLELKDGLGTSLIPEQDVCVADKQEDQWSVGSLESQGQQARPRTRKAVSASLENLRKKRNRAGEAVKARISRIDQLLLEQCTDIVKLTASKDGLNMDMDNLKRFHNEISDLLMLNSDNEFPNEDHEYFDRICDNYLDCCADVKTKINDLTQERFEMLTQRSHKSSTKSSISKLSKVSSISSRQAAANAAGLKQRMTSLIRQQELKRKKEELQLLQRELERQGEQERLQGEINAVVAIHDTLVEDTKLSSNNYPSIPPPIHNHPSISPPIHDHPSIPPPIHDHPSIPPPIHDHPSIPPSNHDHPSTPTHTHNYQGISPPIHDHPSIPPPIHDYPSISPPNHDCPSISPPIHDYPSIPPPIHNHPSISPHIHNHPKYIPTYPRSPNTPPLGKNYSSTLLPYTPSTNLKQPTNQELLPVNPNTIQPSTSYQDPRIGQTSQVNTNENTNVGSVATQLDPKIPAFQPTSMSASQLTQPAPHSTNIMEQIQRDGVEIQRQQIELMKRMSLPAPKPPVFSGNIIEFPKWVSAFDALIEEEAVKPGHKLYYLGEYTSGSAQKMINGLLGLQTEDAYKRARKILQDRFGDPYKIYEAYHERLKSWPICSKGAELQELSDFLVSTQETMKTVKYLREFDTFSAIQELVARLPSHYSNKWSQSAKKVEAKNGEYTFNDLVEFVQEAAADATHPVFSHEALISKRREIQKDAKQDDKKFDKKRKYGSFSTYKHSEQSHGYGTVKKGQDVCPLCDKQHKLEVCDEFLKKKVKERTEFAKSKGLCFSCLQQGHMARQCKGDIKCRTCKKPHATVLHFESKPNPNAEKVKEADHVTHNCAKVSHVSENCQDIPTSSLIIPVWICHKDIPSKKVMKYAVLDDQSDSCFITDGVCKELGVNGPETVIELGTMHTVQDIKTQKISGLIISPEDESVDIPLPKSFSREQIPARRDQIPTADMARNWSHLRPIAKEIPAYREDLDIGLLIGNNCVQAIKPRDVIPGNPRDPYAVRTVLGWGMIGATNQSQKHHNTDISNCHRIQTRDIASQDSPELNFISRKPTKEVLNPNAVRRMFEQDFSERNGEGKSLSQEDRRFLEKTKGAIHITDDGHYEMPLPFREKNIGLPFNRSLAESRLGRLKTRFTKDAKYKKDYADFIDDMIKKEYQGESLNRHLLQGPDLTNTLTGVRVNEEHRDYLRFLWWTDGDISKDPEEYRMKVHLFGATSSPGCCNLALKATAEDNEEEFGSDAATFLRNEFYVDDGLKSTPSVQEATTLVKNSVEMCRKGGFRLHKFLSNERKVIESIDIENRATEVKKLDLDHDVLPIERVLGVECSIYDPLGFVAPVLLIGKRILQQLCKDNADWDDPIPEKLKAQWERWRADIHLLEQMKVPRCFKPDEFGNLKRVELHHFSDASTDGYGQCSYLRLTNEMGKIHCSLVMAKSRVTPLKQPGDGASRGLKAKPEVQSNRKYIPVSVEEMELAEQYIVKLVQKQAFSKELSSLKQEKEDQNHSRSERKKRVVSKSSTLLRLDPFIDENGLIRVGGRIRSASIDDKAKHPIVLPKKEYLSELVVRQLHEGVEHQGRGITMNELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HXL2</accession>
    <name>A0A7D9HXL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075297</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002129">
        <property type="protein sequence ID" value="CAB3992816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HXL2"/>
    <dbReference type="OrthoDB" id="6109425at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="34208" checksum="118281CABD3FFB38" modified="2020-12-02" version="1">MYVFLLYNSEVYVKNDFNNWDKLPIEKVHFRFCKLYLGVGKKASNIASRGELGKFPLIINIFKRLFKYITHLNSLSETAIAKQAFLISKDLFTKQNTSYYRKAMDILKAFNLNTEITDLESITTELIQPITKRLKENYLTFWKHKLENSSKLTFYSTIKIDYEVEKYLSIIKDSNKRKTLTRFRLSNHSLQIETGRYHNIAREERLCNLCHSGEVENESHLLLTCEAYGDTRVNFINSLKNDLTTTETNLNEPTLSVDIMKSTASNTTLKLSKFIFSCFEERLKQLEAGNAGSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3B6</accession>
    <name>A0A7D9I3B6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Organic cation transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A072287</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002843">
        <property type="protein sequence ID" value="CAB3996302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3B6"/>
    <dbReference type="OrthoDB" id="5959346at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24064">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 22 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3996302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="279" mass="30936" checksum="4437FFFA8418AC94" modified="2020-12-02" version="1" fragment="single">FLPESCRYLLVNKRHDEAMKQLETVARWNGKSMPMVELEVPNEIVSEKSDVRDLFYDKNVGMVTFASWISWFSCALVYYAVSYGAIYLGGNVYLNFFLVSLATVPSTLTATICMNKFGRRKAVAGGMFISAVASIISVAIPSDRSNTGYTVGRVIMAMACKYAILVSFNTIYIFSSELFPTSVRTIGMGTSSACARIGSFLALYVVWLIRIHALLPYSIVFVLCIVTGLICFKWLPETANKPTPESMEGVIEMMQMDDAVEQTVEVTEESLTKKDAVSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I3Y5</accession>
    <name>A0A7D9I3Y5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031068</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003665">
        <property type="protein sequence ID" value="CAB3999767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I3Y5"/>
    <dbReference type="OrthoDB" id="5987870at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF9">
        <property type="entry name" value="ZINC FINGER PROTEIN 862"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="405" mass="45171" checksum="BC8CF015E2F3010F" modified="2020-12-02" version="1">MSKRKQIDISSYFGGAAISSKDVCTTEKPATAAKVSKRVLHVSTAEKWKTTQLAVYNAEDWLLFLKDTDANQVKALKYSACTRYYTQISGVKGFSPQWSSDEGCTRLMLSSATDHATSEPHKQAMILVMNQKGMNVSERSKAMQGVLDSQKQGSFLSALATLNEQDLERTKKKFQIAYYIAKEELPIVKYSTMLDLEERLGVDIGTAYRNNNSGGVFMDYISESIAEELKQQLAKVHFYSVLTDGSTDAATSENEAVFVVHFDPDPPGCDKVKVVVSFLKLNFLQTAGATGIVESIKESFKAVSIDDLFHKLVGFGADGANVNKGNKEGVKAILRRENPWLNFGWCVAHRLELSLKDSLQGTVFDEIDEVILRMHYLYKQVLGLHLFPCDTKSLKHNNKGYIIRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8A9</accession>
    <name>A0A7D9I8A9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027301</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004138">
        <property type="protein sequence ID" value="CAB4001626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8A9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="13"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="35"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="125"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="11647" checksum="A833EEA1F04168A3" modified="2020-12-02" version="1">MWCSGGGGGGGSSSSSSSSSSSGSGSGSGSGSGSGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGGSSSSSSSSSSSSSSSSSSSSSSSSSGSGSGSGSGSGSGSGSGSSGSSGSGSSSSSSSCCSSSSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IC75</accession>
    <name>A0A7D9IC75_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004309">
        <property type="protein sequence ID" value="CAB4002271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IC75"/>
    <dbReference type="OrthoDB" id="10062389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="307" mass="35078" checksum="673CBB841BBC9D68" modified="2020-12-02" version="1">MESGLINGAVFINLRKAFDMVDTDLLLRKLAVYRCDDLTLTWFKSYLQERDQCVHFKGTLSSKKSSLYGVPQGCILGPLLFIMFINDLPLYVNSNTDMYADDSTIHTSARTVEELNNKLTEDMTNVQAWCTNNNMVINDGKTKAMMITTSQRAATLNSNLRVEFNGVPLKNTNNEKVLGVVMNERLSWKQQIDKVAKSLIKGIHLLRQIKEYLPIGHRVIYYQCFLQPHIDYCCTVWGQSCHIIRIHKLQKLALRIIYDKPKLTSSGPLFKAAGVLPIQQRVMLRTAIMVLACEYRRLTSGEMYCPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IET1</accession>
    <name>A0A7D9IET1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">HLA class II histocompatibility antigen gamma chain isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A034372</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004663">
        <property type="protein sequence ID" value="CAB4003559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IET1"/>
    <dbReference type="OrthoDB" id="5989649at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005604">
        <property type="term" value="C:basement membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007160">
        <property type="term" value="P:cell-matrix adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00191">
        <property type="entry name" value="TY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.800.10">
        <property type="entry name" value="Thyroglobulin type-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051950">
        <property type="entry name" value="Dev_reg/Prot_inhib"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000716">
        <property type="entry name" value="Thyroglobulin_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036857">
        <property type="entry name" value="Thyroglobulin_1_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12352:SF3">
        <property type="entry name" value="NIDOGEN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12352">
        <property type="entry name" value="SECRETED MODULAR CALCIUM-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00086">
        <property type="entry name" value="Thyroglobulin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00211">
        <property type="entry name" value="TY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57610">
        <property type="entry name" value="Thyroglobulin type-1 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00484">
        <property type="entry name" value="THYROGLOBULIN_1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51162">
        <property type="entry name" value="THYROGLOBULIN_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <feature type="disulfide bond" evidence="5">
        <location>
            <begin position="144"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4003559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="28953" checksum="45EE4175999B6485" modified="2020-12-02" version="1">MCLRNMCDDDVSCPAYPQASCRMNYCGHCSAEFVFPNGTIADCGKQDVTLKQRSVQCEDKNNTMYICSSSLCKGQTCARNPKATCRVPPFSCDCAVEFYDEDGNKVDCLTECQRKRKDLETGPLLVGAYKPSCDEDGTYSPVQCHGSTGYCWCAFSDGTEWPGTRVRGQPDCTENKRPSIRSVHVRLSFDAKFDNIKDSLGDFKTVLVDHLKGRFGIHPKQVKNLKVSSGSIIVEFELFKHEEGRDIRNVSSQLRDMVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGB7</accession>
    <name>A0A7D9IGB7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A026973</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005671">
        <property type="protein sequence ID" value="CAB4007000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IGB7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4007000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14326" checksum="556C1E93CF209B15" modified="2020-12-02" version="1">MAGSISIKACNSSIYANTTADGIMSKTFVPHSEPFAKLGSLSYLWYGATAVATTFVVGVIVSLICETNSDRQTSPGPELLFNIPDFFRSLICCKKESWSLASESSLTHRSYNEKKAKDTKDGDEIQLNEMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRT1</accession>
    <name>A0A7D9IRT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061793</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007444">
        <property type="protein sequence ID" value="CAB4012265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRT1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19553" checksum="0DCF0F620FEE18E2" modified="2020-12-02" version="1">MFRSPQQLACLRVDVGRIGKARKPSESKRQSSLRCWTAQGSVEDIVRHLRAENERSCSKQSEDRTCYIVALKNNKVKAKDATMQQQQEILSAFTKKLEDDTAVLLDQVDMKYNEASAPLVKHQADVKAYLQAKTKSSLDFVKNIISNGNDEEILSLKHEVEEKAGSIEKKTQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWT5</accession>
    <name>A0A7D9IWT5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Serine/threonine-protein kinase 1</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A047592</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Host cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020008628">
        <property type="protein sequence ID" value="CAB4015216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWT5"/>
    <dbReference type="OrthoDB" id="5951403at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030430">
        <property type="term" value="C:host cell cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051138">
        <property type="entry name" value="PIM_Ser/Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22984:SF25">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22984">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE PIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-1035">Host cytoplasm</keyword>
    <keyword evidence="7 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="12">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4015216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12976" checksum="8C65BE3BF6B3A360" modified="2020-12-02" version="1" fragment="single">MKYHPNVIKFLHYQKITSEMFVIICERIANCKDLLDVRKERGGFFTEYETQKYVKTLVDVVLAMDKKNIIHRDIKLENILYDVEKDDIKLIDFGMATKHKPGKLHTTFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J1H1</accession>
    <name>A0A7D9J1H1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A071877</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010186">
        <property type="protein sequence ID" value="CAB4018832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J1H1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007237">
        <property type="entry name" value="CD20-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04103">
        <property type="entry name" value="CD20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4018832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25534" checksum="F237C69526370D71" modified="2020-12-02" version="1">MDITKALKKYILISGIGFLPLGFVVIICDSMTHAETEDSLKPRRSGTTFWVGLPYFVLGFFMIYLSRNQKKTHVKVCRIVSILCFVLSMVAVVFEGPDWNYYVTYSNYVCEKGSSSTCNKTTGLSALFGSITVAAIIAILLCISNILICNWLLFRMSVETPEMDFERLNRKQQTTSTQVTEDSENIFKTQGYHTCWTDDKETKQQPLTPEKEAIQEKSNEDTLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6V3</accession>
    <name>A0A7D9J6V3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Dopey-1-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A002809</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012275">
        <property type="protein sequence ID" value="CAB4023027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="297643at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006895">
        <property type="term" value="P:Golgi to endosome transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040314">
        <property type="entry name" value="DOP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056457">
        <property type="entry name" value="DOP1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056459">
        <property type="entry name" value="TPR_DOP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14042">
        <property type="entry name" value="DOPEY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14042:SF24">
        <property type="entry name" value="PROTEIN DOPEY-1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24598">
        <property type="entry name" value="DOP1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24601">
        <property type="entry name" value="TPR_DOP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DOP1-like TPR" evidence="3">
        <location>
            <begin position="320"/>
            <end position="718"/>
        </location>
    </feature>
    <feature type="domain" description="DOP1-like C-terminal" evidence="2">
        <location>
            <begin position="975"/>
            <end position="1346"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="250"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="507"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1026"/>
            <end position="1056"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1352"/>
            <end position="1417"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="250"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="294"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="305"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="523"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1026"/>
            <end position="1040"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1352"/>
            <end position="1373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4023027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1522" mass="169652" checksum="C930FA408A2A59FF" modified="2020-12-02" version="1">MFALYVIDILVTILHYYIFVAEKGSLPLWLRCLIACCYQVDDFDIQSTSVSTVLDMINLTLSVNPGVTCARAGVMVIPILTLDEVVMIEKSDIYKVIANSLWSILGRPVPIHHRKAVELLIQLHNLTPSPHLCENVIGSSMVSANKESRLEALKRFANLWHIAKSILSQNIQGRTARGLRTFDRSLFVMLDGLESEEPEIRSLTKMWVSHSLEQGDIGRILEPLLLLLLHPSTARVSLFYCEREKTRKQESGNELGVDRDAAGEQGDDDDGILEDINDDSRAVSGGTEGLKSGATKEKTDKTTTSEMSNTGQAPQRLSDMHKLHYSGKCDYHRILYAFRTLSGVLRVVPRQFVCASAATSIGSSFGPYEERIKELLIRHKRSLLGKGFYGPLFGDRGSQTSPVSKITIKPNTSKYLEILITITLYFIRSHYLAASNISREFLEGNVKTQVSSLECLSNLIWELVKLVRESGHGFGNFITDLLSRCRVQKAIIHCLAATVNGTCEIPMSRSPSDKLRPSPDNYRSASDCSRSSTDSLPESSRRPSEETVDQMILQSKLLEVVESLIVLEHALLSCIEALTPDHHGNSDFEMIMKGGQEAGANVEGYTSRFIQGKSLSSQEMLLTMVLYSLKAQGDFEMSSRWTGFVIECLPYLGMDLRKWVVPVVLQMCHNISDVTRVFKDHRNGQAQCSSSRNKQYPPDHLLAALAGLTSICHFCLLDAVSSPVLTIQPRAGNSVGSPGLPFDSGQKPVRSTQIFANLLHAFSSNSKSSNSSASVQNPSPLLEAREGLLSVLPKVIGTLLSLWGVWNLDCPNESLPSSMALLGTPKALRQNILQLLTPIAMTHTIVFLASVADVWNTKKLTEKDFETKSHFFLAVSDDQLRVISLVLDIKALSLEVVIDTVRQILHQEVTNRDKGFEASLLQFFHEFLQRSPINHITQAKSSFLALLKDGLQLNLPAPAVFLLLVNLHSYCVKIPVKEDRKSRKETQDVAQRLIESCTSIAGLSLGSSAWFSRNLSVITLPETIAEESSPQSESDTVSSDVKSEPASKPVSGGNAGKHSTQALVVLADVLASLLDILFGSEEKERVVNFLINVMGNVTPYLRNHSVANVPSFRACCSLVASLSSYQYTRKAWRKEMFELVFEANFFQMASECVGNWRIIIDNLFTQDHASFRELMARATVTSSTTISIFGNHEQEMQQRALMLKRLSFAVFSSEPDQYQSVLPEMQERLAECLRMPQVPVLHEQVFLFFRVLLVRMSDNMTSIWPMIISEMIHVFLLMESDLLQADTPSRDQQMFYSETVLGASGYVNYSQEKWLGLYLSVCKLLDIALCLPPEQLPQFQMYRWAFESAGSLGTSGTARKQGTKETAPSLETTETVEKPEANESAKSTKKIAKNSGTNKTEKKPGTSKTAKKQGTKDTEGNMCAIFRPYVSRITRLLAKRKNIYVSAEPLECHVGRPLLTMYQLESVDELLPFLRMLSKEGRILLDMRISEKSKTRKFKTGNSAKNFVEKLIERDFLDPLGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBU5</accession>
    <name>A0A7D9JBU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071997</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013999">
        <property type="protein sequence ID" value="CAB4026080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBU5"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="75" mass="8558" checksum="B271F7EECBB31030" modified="2020-12-02" version="1">MDNGLINAILFIDLKKAFDTIDHEILLNKLSRYGFKCKTIELFRDYLTGRTQITVVNNIPSDSSDVTCGFLKDPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDD1</accession>
    <name>A0A7D9JDD1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060000</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014535">
        <property type="protein sequence ID" value="CAB4026996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JDD1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="23352" checksum="87AFFA13E3653C26" modified="2020-12-02" version="1">MFKLLRNKVNRERKRCRKVYYKKKVGNLLDSKPKDWWREVKQLSGQQSTRPDLRSMIRFDVEDSDEGLGNRINEAFISVMKDFPPLPEDFNLSTDNDEPISVSETTVERLLRAISVSKASGPDELPNWVLKSFSDILAPAITDIFNASFCECKSFCYKRRKDMKKISGLAPSWFPPSIIYLDHAYVLMAINSLHKYELFMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JDP7</accession>
    <name>A0A7D9JDP7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A020305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014830">
        <property type="protein sequence ID" value="CAB4027488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23159">
        <property type="entry name" value="CENTROSOMAL PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23159:SF31">
        <property type="entry name" value="CENTROSOME-ASSOCIATED PROTEIN CEP250 ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="16"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="718"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1317"/>
            <end position="1347"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="858"/>
            <end position="927"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="963"/>
            <end position="1091"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1140"/>
            <end position="1174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="16"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="42"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1317"/>
            <end position="1337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="1338"/>
            <end position="1347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4027488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1347" mass="148708" checksum="3762D067EA8EF7CC" modified="2020-12-02" version="1">MADPSQLQQLQLNQGMQGQMMAGSPTQMQGQMPMQQLSPGQMSGGGSPGFGGQLSPGGSVGGQMMVGGQMSPGAGGQMMVGGQMSPGAGGQMMVGGQMSPGAGGQMLGQSPTGQFSGGAQMMSPQMMSPQMMGGSPTSPMGGGMLAVSPTQQMPGGQLAASPTGVQMSPTGMVPGGMVPDVSQVSMVGQGSIVSQGSVGMISQGNVGMVNQSGMNMVSQGGASMVSQSDMGMVSQGSVGMMNQGNGGVVNQSGMNMVSQGGASMVSQSDMGMVSQGSVGMMNQGNGGMVNQSGMSMVNQSGASMVSQSDMGMVSQSGVGMVSQGGMGMMNQGISQGQVGMVNQGMVDQTMVAQSEASMVSQTMVSEANMVSQSQFGMVSQNQVGMMSQGMVDQTMVAQSEASMVSQTMVSDANMVGQSQFGMVSQNEVGMVNQGMVDQTNMVFQGEASMVSQSMVSDSSMVSQTQIGMVSQGMVDQTSMISQSMVSDSSMVSQVGMVSQREVGMVTQGVVQDGMVSECMVSDVGMVAQISECGMTSTNIDSTTIQTIPTIMVESPQNIADPGMQVIGTMNQPLDTTMQVIGTMDQPLDTGVTMDVVGTVPMVDYPDGSTMQVIGTISPAPPPDPSVCVYPVSPGPTAVSPVPPSDPSVCGYPVSPDPGYSMDTIGMVPGDCAICVSKSNEIQELETQITTLKHDFEIERTEVETRYIKQMKDIEVRCEEEKDDIRSDAQREEDNYERKLKEERSKLNEVQLKLSLLQAEIDNNEKSGKRQENEMDELEDKFRKAKTERDQFDELNRRLKMELQRVQQQTYSDRGLIKQLQDKLSQADNTEREWVTKYNREKDKVVEHCEKITVIENTVTSLEKQTRDYVIEIENLNSRLKKEKNECEELRAMLGEESKDDEKQNKLVKELQRKIKDLHISIEDLENKWRLEKDKVYKLNTDIYQITAEKTKFQKLSKGLREDVDDLTSKYSREKTEVERLEEELAKLRREHTDSKNVMDVDSIVVSFEEKIRRLTAECDSYEEKYKYEKREKAEFEDKFHRIKSEVTDIQEKYRRVDVERDTYIRKCREITESYEQKVRVLQQQISELRTQPTRPVQPIQQPVPVPQPAIIPYATAPCYVDTMNELGISIEKYNEMKHQRDSIEQRYNALVDLLAKYEDDVQKLEKENKDFRLSVTDVDYTSINITKQESASYSHIDFRRIVDEKDYFEGRYKKEKAERENAEKKLRDLRNAKEDLEDKLNDIARVITKYEQDTRVLQNENDQLRRQLQDLMMNGNFQKNISVEYNVGKRPRSDSNKSLDKYKHEIDELHKENEEFKQLLDSLDNKDGGKGDKDDGRNNTGKISGFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPA0</accession>
    <name>A0A7D9JPA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072301</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019048">
        <property type="protein sequence ID" value="CAB4033210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPA0"/>
    <dbReference type="OrthoDB" id="5990539at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF28">
        <property type="entry name" value="ZINC FINGER MYM-TYPE PROTEIN 1-LIKE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21647" checksum="3C3EEAA52D118612" modified="2020-12-02" version="1" fragment="single">MSAYKTWKTYGSGPRVDSRISQARRDEIQRHDEEVRQDRELLKNLTQAVLYLSRQEFAFRGHDESNDSLNRGNYRELLERFARMDSVFERQLHVYPLMRRLMYPPAKEQLSMIVRLDKMGDIIERQLGFVDFSSERTATALSTVIKGKLIQHENIMDKLIGQTYDGASVMSGHDGHLNGVQAQIQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPN6</accession>
    <name>A0A7D9JPN6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A063042</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020018782">
        <property type="protein sequence ID" value="CAB4032890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPN6"/>
    <dbReference type="OrthoDB" id="5978628at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="3">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="540"/>
            <end position="765"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4032890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1037" mass="118867" checksum="18742B4B2DA05877" modified="2020-12-02" version="1">MIRQLGPASLFCSFSSAETKWIYLLRILGKLIDHKDYSDEELDNLTWEEKCRLIQSDPVTCARHFDYQFNTFLKEFLMSNIAPLGQVKDWFYRVEYQQRGSPHIHMLIWLQNTPVFGVDKDEDITAFIDQIITCCKPKGKDITFDQLLEELDISEHEYILVIRSSLNCPTIFLKRSPNELRINNYNSACLHAWRANMDIQFVLDVYACAMYIVSYISKAQKGMSELLRKACAEAKEGNANIKQQVRDIGNKFLNSVEISAQEAVYVILQLPMRKSSRSVIFVNTSPPAERVELLKPLSEIEKMSDESEEIHSSGLLKRYVERPDILQNVTLADWAAWYDSCGKHNYKKSDKKADIDNLPVETEDGNNDDELFNELENPSISVLSNKSIKKRSQARIIRSVWFNKEAHLGKHYRELIMLFTPWRNEQTDLIGCFSSFQEHYLARYDEISEQMKQYAVCSEDLNEIHQHLQECDDDMYDTIAPVTQHTELQDQDEGNTDTHPDLNENYDLSADLGIPSTLPNNEPLVLNEMQDDEYRGFVQMLNKKQREFFYHVLHLIKTSDKPFYYAFLSGSGGVGKSHVIKSIYQAGLKYYNSKAGEDFHRTQILLLAPTGKAAYLIKGNTIHSALAIPASQSPKNYKPLDSGRLNTLRCQLGALKLILLDEISMVGNSMFTIQLNNRLKDLKGSKEDFDSVSIITIGDFFQLKPVMDGYIFTDVQSLSSYNILVPNLWKKYFKMFELDEIMRQRESKMFAEILNRLREGNHTSSDLEKLKERCVEEPNCPKEALRLFVQNALVDSYNEKVFESFSRNKYTIKAQDSVIGACSPESKEKIMRQIPYVSLRNSKQLAHKLKLAVGQRTEIAINVRTVDGLTNGASNVIRLIQLNNESKPSGIVWVQFDYEDVGRKTRQENRSLYSTGIESTWTPIKPVTSQFAVGKTKSAQVVRKQFPLRPASAKTVHRSQGDTQTQIVVNLNTNRAIPHIHYVALSRVTTIEGLHITDLCEHKISVDQSVVKEMQTLRTEDSFKLCFTCTFISVGSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JUQ6</accession>
    <name>A0A7D9JUQ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034377</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021067">
        <property type="protein sequence ID" value="CAB4035457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JUQ6"/>
    <dbReference type="OrthoDB" id="410381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="462" mass="53364" checksum="7D811D16055DA391" modified="2020-12-02" version="1" fragment="single">QHIQTPTRTSYNSSSLIDLILTHINDDKTLEARVVDHGISDHSLVYICRKISIPKEPPKIVFTRQFKNYNSHQFKEELSYYTNLDPTSNGPNVLWNEFKNNFLTIAEKHAPVRQRRVKSEHKPWLTKEIKWLMHHRDYLKRQSVRLTSSNYNEAYKRCKNKLNKLIKKTKEEYFKTKLSNANNNKESWQAINELLNKKPKTTHVTQLNVDDQVITGDTNIADCFNQYFSSISCKLSKNVQNINVDPMTFVTPMESLFHFSCISVQETFDALNQLNSRKSPGLDGISVKLLKDTSNVIAQPLANIFNLSLQTAIFPDKWKIAKVSPVFKEGNKTDCGNYRPISVISVVAKLFEGLVYNQLRMFIADNSILVEQQSGFHSQHSAEMAFLGSTNEWLYNMDSGLINRVLFLDLKKAFDTVDHEILLKKLHLYGIKGTTYAWFESYIQNRKSICLMNGKKSHAREI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JY61</accession>
    <name>A0A7D9JY61_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071733</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024166">
        <property type="protein sequence ID" value="CAB4038397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JY61"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="67" mass="7744" checksum="AE9E12D15BC40948" modified="2020-12-02" version="1">MVGPKTSLFIQVVAAASIGGAIGFYIQHRVWSVEKKETIFELEEKIREKKEIIQELRENSNINIERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K1M4</accession>
    <name>A0A7D9K1M4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002241</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024974">
        <property type="protein sequence ID" value="CAB4039120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K1M4"/>
    <dbReference type="OrthoDB" id="10253073at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33504">
        <property type="entry name" value="NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33504:SF2">
        <property type="entry name" value="PROTEIN MFI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="14591" checksum="46C7528205D409DD" modified="2020-12-02" version="1" fragment="single">MSSSRVKLKEDFCKFREQHASISFEDFCALIIQSWWHQVCEQRRNSRVPSERPPTMADSYSTYNGRATQRPRTMTRLAAANIIQKAWRKHVDMQVYRYYRDLISFKFRGDPALLLRCINPRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K268</accession>
    <name>A0A7D9K268_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A077324</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026629">
        <property type="protein sequence ID" value="CAB4040321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K268"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043590804" evidence="2">
        <location>
            <begin position="20"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4040321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="15610" checksum="5BB2D040D7F5F524" modified="2020-12-02" version="1" fragment="single">MKVAKALCVVFLFYSASYGESRRMKNDPNSEKRTGVANTPSTIAESLRQKVLHASGESQGRQFAFIYLQPTGRAELILTDRNVDQALSRSRSLNMRTIDVFPPTPKGANFRMAFPTNPERIENHSEYKLLNNNALRDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K5F4</accession>
    <name>A0A7D9K5F4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">26S proteasome non-ATPase regulatory subunit 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028573">
        <property type="protein sequence ID" value="CAB4041596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K5F4"/>
    <dbReference type="OrthoDB" id="10252509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008540">
        <property type="term" value="C:proteasome regulatory particle, base subcomplex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034515">
        <property type="term" value="C:proteasome storage granule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002015">
        <property type="entry name" value="Proteasome/cyclosome_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10943">
        <property type="entry name" value="26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10943:SF1">
        <property type="entry name" value="26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01851">
        <property type="entry name" value="PC_rep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0647">Proteasome</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="87"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="301" mass="32267" checksum="719817C8F990EA01" modified="2020-12-02" version="1" fragment="single">SKIFSPPGDDDDCCRGDDGGDDGGDDYDGDYDGKQDAAEAPLAALNAVPDPLGKWASVLVEICSYAGTGNVLKIQNLLHICSEHYEEKEKETKEPKESDSRETKDAKGKTKDATAGAPKEEPKPKLDGSHQGVAVLGISLIAMGEEIGAQMALRTFRHLLQYGEPVIRRAVPLALAMLSASNPQLSIMDMLSKLSHDNDAEVAHNSIFAMGVVAAGTNNARLAGMLRQLAQYYNKDASNLFMVRLAQGLVHLGKGTMTIGPYHCDRSLMSPVAVAGLLSVLVAGLDMKNSKFKIHLYISLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K9A2</accession>
    <name>A0A7D9K9A2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031677">
        <property type="protein sequence ID" value="CAB4043166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K9A2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20635" checksum="C40BD8D5132FBFC4" modified="2020-12-02" version="1" fragment="single">MNYLNGLSYDSGTYVWLKTFEELERFVLEALNLKGKWKSPGGDVKVFKSEEEGAYMIKLRGPRSKKLVIQSDDAEENLKLKLESLINRDPKDVNPSCEASTKEVCSSVNELTEPSVSQFDGLKADIATLVDITSDLITEINSMRSKQKDFESVIRKQDSEICRLSEANLILASSLRSLGNSTFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K9I9</accession>
    <name>A0A7D9K9I9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Pentraxin (PTX) domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A050496</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030990">
        <property type="protein sequence ID" value="CAB4042850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K9I9"/>
    <dbReference type="OrthoDB" id="5949213at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051360">
        <property type="entry name" value="Neuronal_Pentraxin_Related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030476">
        <property type="entry name" value="Pentaxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001759">
        <property type="entry name" value="PTX_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277:SF125">
        <property type="entry name" value="B6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277">
        <property type="entry name" value="PENTRAXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00354">
        <property type="entry name" value="Pentaxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00895">
        <property type="entry name" value="PENTAXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00289">
        <property type="entry name" value="PTX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51828">
        <property type="entry name" value="PTX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pentraxin (PTX)" evidence="7">
        <location>
            <begin position="1"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4042850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="13455" checksum="5C0CF1F7E727F9A1" modified="2020-12-02" version="1" fragment="single">TDVQLADGKLHHVCVTWKSSSGQFKVYKDGALVKTIDNVKSGEKFNAGGTWVIGQDQDSVGGGFQIVDSYKGILTEVNIWSKILGSGEIQRFANDCGLPMQGNYKAYSNFTISKATGLIKPSCCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K9W1</accession>
    <name>A0A7D9K9W1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger BED domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000863</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031335">
        <property type="protein sequence ID" value="CAB4043022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K9W1"/>
    <dbReference type="OrthoDB" id="6630171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501:SF5">
        <property type="entry name" value="HAT C-TERMINAL DIMERISATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47501">
        <property type="entry name" value="TRANSPOSASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140996">
        <property type="entry name" value="Hermes dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="214" mass="23395" checksum="CF363B62B430C908" modified="2020-12-02" version="1" fragment="single">MNTARSSKRKASVCGASTKPAKQTKLNFNPANNANQITVNSAILEFICGACMPFSIVENPSFCSLIKTLQPNCTVPTRKTVKLKLDGMAKTTKENLCKEFLNVTHVATTTDCWTSSAKSYIGVTAHWFGKDLKRQSAALACRRLRGSHSHALLANSLNEIHSEYGIRSKVCRTTTDNGSNFVKAFKVFSGTEASETDGVDDDDDDADKLMMKMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KFB0</accession>
    <name>A0A7D9KFB0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A020792</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037277">
        <property type="protein sequence ID" value="CAB4045020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KFB0"/>
    <dbReference type="OrthoDB" id="6769077at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4045020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="40180" checksum="BF03A909CBE8BDBD" modified="2020-12-02" version="1" fragment="single">MENALGDLRDDICIPYLDDIIVFSNSFADHIEHLRKVLRRLRSHGVKLKPSKCTLFKREVSFLGRIVSQNGYRMDPKATSAVEAWKNTKPERHIKNFAQKAKPMYELLKGQSSSTGHEKEKGNQHYQENEANCHREGLGAVLYQEQNGILRVIAYASRALSPSEKNYHLHSGKLEFLALKWAVTEHFRDYLYYPKFLVYTDNNPLTYVLTTAKLNSTGLRWVGELAEFNFDIRYSPGRINTDADCLSRPPLEIREYMTSCSEEISLETIQATISSVQAHAAGDVVWLTAVTDETKEMEADELFESTTSSRLKVIDILKGQQEDPTIKRVLQFCKLCQKPKVTDLTKVTPRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KWP2</accession>
    <name>A0A7D9KWP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022241</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011602">
        <property type="protein sequence ID" value="CAB4021754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KWP2"/>
    <dbReference type="OrthoDB" id="5975337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF1">
        <property type="entry name" value="TESMIN_TSO1-LIKE CXC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="617" mass="70100" checksum="AC9A877DDEB5C0EC" modified="2020-12-02" version="1" fragment="single">LPPADNGYHRKCYQNYTHAKALKKLSLEACIPQPTTEQEAKVRVSSRKKSRGVEEIIHFCLRYIEKILADQECCICEKRKTAKCGSGYEALEKCETENGARTLQQAAALHEYSLLQAKVLAIIQPSRFVTFVWDNNDINPESLKGLSLHCTNSIVIQSSIVALNQPEPFSTIVSAIQCGSSPKAKQERGTLNRIFRTGRASIILLCEGDSDDYDKIGYLPSISKSPTSHDTVLELLSQSKLKAEKLGLNETDVILDMAIYSKAVEIMMNPRYIDLKKFIVLHLGGFHTMCIFIAVIGKRFGDAGLRDIVIESNLLGESSVEQMLKGKHYNNAMRIPKYLYNAIKRHLIDSYEQSESDQPDLLSAVSYEELIDSEELQKFVSSPTQQSLDSLSKDHKEMIDEIHKYEASLLNGALGPTASVWSSFLQMVQILLDFARSVKLGDWKLHLQSTEYMLPWMFGYDRLNYTRFLTYYLVTMKKLPETHPALHQQFESGHFSVRRQHGRFNKIPSDQAIEQTINREQKCAGGIIGYSTDKGTVQRWSLTSHIAAKCQSKLEEFLGMSEANSVTKDLARKRIRHDEECVARSYDLIKEWGTPFKENTSLIHLKFWIGIHRCNPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LJ16</accession>
    <name>A0A7D9LJ16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A083288</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017614">
        <property type="protein sequence ID" value="CAB4031416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LJ16"/>
    <dbReference type="OrthoDB" id="995477at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.650:FF:000001">
        <property type="entry name" value="S1 RNA-binding domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.650">
        <property type="entry name" value="RuvA domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3500.10">
        <property type="entry name" value="Tex N-terminal region-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050437">
        <property type="entry name" value="Ribos_protein_bS1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055179">
        <property type="entry name" value="Tex-like_central_region"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023323">
        <property type="entry name" value="Tex-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023319">
        <property type="entry name" value="Tex-like_HTH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018974">
        <property type="entry name" value="Tex-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10724">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22706">
        <property type="entry name" value="Tex_central_region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09371">
        <property type="entry name" value="Tex_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158832">
        <property type="entry name" value="Tex N-terminal region-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tex-like protein N-terminal" evidence="1">
        <location>
            <begin position="16"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="Tex-like central region" evidence="2">
        <location>
            <begin position="150"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4031416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="273" mass="31075" checksum="623499CCC5FA00E7" modified="2020-12-02" version="1" fragment="single">MSADKNQRGKNLQTLEIIQFIADDVEVECRAVENVVRLLTNDNTVAFIARYRRHETGNLEAQKIRMIQESLEQVKAVESRKDSVIKSIGEKITPDIRQSLKYARSLQEVEDIYSPFKPGSKGTLANRARNLGLDKAAELISRDSNIENLSAFVQPGKKGLSSNAEVTKGVQHIIADKISKDKLACNLLKSMFENSRITLETKVREEFEKETKYKDYHQSSFSVKQVKSHQILAINRAEGEKILQVKLNCPQNLERIFLHQAERQHILISNRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M397</accession>
    <name>A0A7D9M397_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003808</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030451">
        <property type="protein sequence ID" value="CAB4042601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M397"/>
    <dbReference type="OrthoDB" id="442947at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00105">
        <property type="entry name" value="KH-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="entry name" value="K Homology domain, type 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50084">
        <property type="entry name" value="KH_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16869" checksum="4D6E15798417562B" modified="2020-12-02" version="1" fragment="single">RKVTGDVRKIEVPVQKEYINFVLGKRHRNIERIETKSGTKIKVPFRRNAEAEGRDTIRLEITGPPKNCDRAHWLIRHCVIAYKDKIANKDIRSGFGGYSQFICFDFKDENEKFELKLPDGSAPKLDGFIQGQRYRIKNETDDDSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MB46</accession>
    <name>A0A7D9MB46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038676">
        <property type="protein sequence ID" value="CAB4045306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MB46"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="303" mass="34052" checksum="F376F0E9BFAE42EB" modified="2020-12-02" version="1" fragment="single">MQLCRNRGQVHSGTQPTPRLSSRATNWLVGLQISSINCAVSPNSLRQRYPSVFDGVEKLTNYQQKISINTNIKPVAQPPRRIPFYVRKQVSTKLEELGRLDIIVKVRGPTPWVSPLVVVPKSSREIRVCVDMLQVNTAVIRERYPIPTVEKSLQDLNAAAAFSKLDLKWGYHQIELDEKSIQLTTFTTHDSLYRYKRLMFGISAAPEIYQHSIQQVLHGLPGVKNISDDIIVFGNDKSEHDRNLHGVLARLQERGLTLNSAKCMFSVSEITFFGFDISARGIRPNAQSVEAICNSPTPTNASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MBL6</accession>
    <name>A0A7D9MBL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026364</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039132">
        <property type="protein sequence ID" value="CAB4045383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MBL6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="18054" checksum="69C4A44B8E69AFB4" modified="2020-12-02" version="1" fragment="single">MQAQGEDKRQEGDIMQAQEEGRWQEEDTMQAKGEDKRQDENIIQAQGEDKRQEEDITQAQGEDKRQDEDIRQDESITQAQGEDKRQDEDIIQAQGEDKRQDEDIMQAKGEDQRHRDDFTWFLDGKKPWQENMAGNHRRNPSQETMTGGNHGRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MGS5</accession>
    <name>A0A7D9MGS5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086704</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039512">
        <property type="protein sequence ID" value="CAB4045446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MGS5"/>
    <dbReference type="OrthoDB" id="6148087at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="163"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="78"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="113"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="164"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="32081" checksum="A38FC9B99483AD95" modified="2020-12-02" version="1" fragment="single">MADSEGEIEDDARLLEGDEATHAQESPTGDRHESRSNMEEKFQELSGNIKDGFSSLGEFLTDLMQQESRGKRFRQKSRSSSSDSADGDQTTSSKRARLEDEQNDDVAVLLGESQPQVENSGNDNEEEFGAILDSVVQELDEEQLGPDVSEKLHAQVINKTLRSKLSEEKRKEKQNAYPKPQNCESLETTRVNLEIWARLQSSTRSRDIRLQKVQSLLLKGLLPLVQLLENCRQSDDRSTDKGKIIKLALDSVSLVAQANVELNSRRRALIKPDLNEKFQQICGDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FCX2</accession>
    <name>A0A6S7FCX2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083984</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000015">
        <property type="protein sequence ID" value="CAB3976808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FCX2"/>
    <dbReference type="OrthoDB" id="10626403at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="337"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="440"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="473"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="219"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="345"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="480"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="499" mass="55499" checksum="52698261AA59AC43" modified="2020-12-02" version="1">MAGIKLLSIKRNEEASYFYENNVSTTLDSNRNEVVGVQENHKAPQISKKSRKQDERRSKKEEKQKIKETKQREKEKKKSLKNSRKEVVGSVDTARSSDRARIKTNGDVKSNGGFQVGMDVGEAAENKNEQSLNAHEEDRNENEEDRNENEESKEEHDLTIRLEHEEASNQDEDLSKEHEGVSSEHESSIKIHESTQLEITAHVTSSEEPGVSGETHATSSDRHADLELRSENCVEETITVDSVQTTEEAPKEFSHQPKVNPDIPEPTGGQHLEIEISDVTDLDADASSSDQVIVVQNNLQTSTYPSSPASEGQILVATVQQVESCVDLDGIFAECNAPTNEEDKEEKRKSVRFQEETEEIGHGEVESEDHEHASMNLGGDFSGTTDDDSVERPQTLQPAVDVVNKEEGRKVESCVDLDHVFAPSEQASDIETVPEENHVGVGKVNGSAKVNGKANLSNSGTKTDDLVEIRLDESNEHTNTTRKKKEKRNRSGFRTCCFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLW3</accession>
    <name>A0A6S7FLW3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Armadillo repeat-containing 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A076540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000018">
        <property type="protein sequence ID" value="CAB3976879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLW3"/>
    <dbReference type="OrthoDB" id="1683831at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46241">
        <property type="entry name" value="ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46241:SF1">
        <property type="entry name" value="OUTER DYNEIN ARM-DOCKING COMPLEX SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="818" mass="92463" checksum="B24D5A8FF6C62071" modified="2020-12-02" version="1">MEERQYARDAVMLLQQARRAGLRNFQRDDSDIVRIATDIALDLQKEKFPDWYTLLENDLEAASSKQTPEKRKSQSEQQDDNVEEEISELSNSSDEKSTPTTPTERMRRKLLSVRLLMESTPAHSEIPPSPIESQTLRSSGIITAKSPPPNLELPLITARFRRSFAFSAMNRSKERRSKLPSTAIGLRSEKYSSPTTQKNRRGMEKKMRRKKCFGDVLNFEMENSNISSEYWEIPFDPFRESILRYHKIFKIEKSESENEQDLSLTKIGNPTATVLALCALKKLEIQKPASNEIIRHLDGISLFLNILDTDNRRCRRNGIQQLVSILSEDDKVVVSLACDVLSLMAKHSNVRVVANKMNIVKKLMSVFKACVKKALQGENLELFRSVCDALWSCCLSARDKDIKIISESLDVISRMMETLDEELVVPLLGIIEECASVEYFRGELEKENFIEKVISIMESKRTKVLSVKILFKCSSDETSQKTLLKPNNIQEIMELFKQNCQGRNDELLTLLLGIIWRCSLNREFRKKFETHGVFPLLSNILKSDKSIQVKSAALGVLSELLWDEADTDSIGSSEMINLLIDFMSVTEPAILVNSARSLGVCARNNSWRKTILQLDGLRLLWSLLKSSDEEVMSSGAVALASVCAYPEESANAVRSIVGGIELLMTLLACMDLTKCKVLICLCEAAVSIAKDAENRSILIDYDLIPVLLRLSESENKILRYYVTCLISRCCESPKERSVFSRCIPYLIEGLGHEYGEHVHCASICALNKLSRDFENCVFLRESSTTKILMNLLASSNERIQDAAAECLSNVRKSMMSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNL0</accession>
    <name>A0A6S7FNL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Gamma-tubulin complex component 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A056729</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TUBGCP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000373">
        <property type="protein sequence ID" value="CAB3981305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="775571at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000930">
        <property type="term" value="C:gamma-tubulin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000922">
        <property type="term" value="C:spindle pole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043015">
        <property type="term" value="F:gamma-tubulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051011">
        <property type="term" value="F:microtubule minus-end binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031122">
        <property type="term" value="P:cytoplasmic microtubule organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051321">
        <property type="term" value="P:meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007020">
        <property type="term" value="P:microtubule nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000278">
        <property type="term" value="P:mitotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051225">
        <property type="term" value="P:spindle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1900">
        <property type="entry name" value="Gamma-tubulin complex, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007259">
        <property type="entry name" value="GCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045818">
        <property type="entry name" value="GCP6_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040457">
        <property type="entry name" value="GCP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042241">
        <property type="entry name" value="GCP_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041470">
        <property type="entry name" value="GCP_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19302">
        <property type="entry name" value="GAMMA TUBULIN COMPLEX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19302:SF70">
        <property type="entry name" value="GAMMA-TUBULIN COMPLEX COMPONENT 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19340">
        <property type="entry name" value="GCP6_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04130">
        <property type="entry name" value="GCP_C_terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17681">
        <property type="entry name" value="GCP_N_terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="4" id="KW-0493">Microtubule</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gamma-tubulin complex component 6 N-terminal" evidence="10">
        <location>
            <begin position="230"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="Gamma tubulin complex component protein N-terminal" evidence="9">
        <location>
            <begin position="328"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="domain" description="Gamma tubulin complex component C-terminal" evidence="8">
        <location>
            <begin position="1244"/>
            <end position="1434"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="799"/>
            <end position="828"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="986"/>
            <end position="1008"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="608"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="991"/>
            <end position="1004"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF19340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3981305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1475" mass="167271" checksum="676C5F93C2EB86C6" modified="2020-12-02" version="1">MEINIPQDAITSLVDKLSEKIFTEEHSVRQNGPFKVHFNKKIVGLLRKVAFDGLLSKQDGGFVETEQNFNVKERLCIVGYKLKAYGLASKANLLEKLVSSLDFNVSRSSVYTGHLDVVSEVEAVVKILLALSKEAEMLSHDPCEVWRKVDPCYQISLNDQTSLSLDSGIVRDHQIEIDYQYFPTQIFEASPTFGIPRRGFESGGDSLQFNIFNQEPGSCGLTKWFGSKVTEDEGFEDASDGLSTSSTFSDDSGTHGLEIWDEALKSKPSRFFTWEGRKQIISKACKPYLTEAGSEIVNYLCDMRMAEACFLINSQPETLRYLHMTEFIRDCLMLLIGVPSQTFQLEKSTGSFHVSTTVRLSGCSPDALQKTLTELAKIGTNYFRLNKFTTCQRHSTLTRSSVLRAFINGLKTCLQKYRQFVITVQASRVQSVLDLSTKFREQAYELKFLSDICMCSQGFAAEYGKPKPKFPMGAKLLTYLYELCLRNMNSNVINLLLYLLKVSCTPYLRFIQQWVFKGRCVDLYKEFMIFENDVYLAYRDKHYWTNGYIMSGTDKMEGVPIFLKELSKNMFICGKSINLLKLCCPEHYICNHNVEIPVMAVVYSLSSLQRISDSSREYSEKMRKLQENIQLEWRRKENEEIHKQERLTASERKKANKALAEIEELVEKAKKALTEKKKEELNFLKQQMEDAINRKELETKQAAAEDARLVRESLRYEVTTARVDDQIAEQARQELIHYYEELSREAERREKHAVWLASRHALKHQRDTFLEEEKDKLDQMRNEITKKLASDRAQNVLENTARKKWDTSNELQKSGVKNELSGNNSSSVQDLIYNSDSVVDSRKTLPRIGQAMQSTAQAIMYPDMVPSTGDDGGSQKSGDSMHGHVKVTRATDSTIQDLMYHTSRKGVVTGPDGIADDGDATALQPTTTTGVHGTKTLTRAMDSTAQNLLYHSSEQAIVATPGGVGKIVTRAMGSTAEHLIYHSDQEKVVTSSSSRGDGSKCSGSRTMTRAMDSTAQNLLYHSSDEQMVPYKSSRGVGSAFQSTVEKEMYGDGGTRTVSNRSFEPSGNMKAILYGHDVNVDSQATTSKAFEQPSVMKDILYPETNQSDVVGGQMRSTRGSAPPSTIQNLMYRSASITEEPEKPARQPLTHEDVWLDAQFESLPDNFDILDDEPFGDIFARVMLDHPGSYHESDGILDDDLDGENDACDVLCLPVILQRCVLEPLTTQIKVVNSAVVSYFMDNLKLVGHFETLKKFLLMEDGEFSYSLTQQLFEKISSGVTPQQLCCISTLNSIMAQSIQSSVYACQSENTRSLSFVLKSIPDIFKRNDVKVLDFLELRYKIQWPVNIIVTENCITKYNRIFAFMLRLKRTAWILQDIRYSLKRMDKSASKSPQLRKIHLFRHEMSHFVNDVQGYISNQILHVSWQEFLNSLEHNVIITKLVNRGYQPHLEELLLRLNFNSYYGKNISSHNSPTFEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUT3</accession>
    <name>A0A6S7FUT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000082">
        <property type="protein sequence ID" value="CAB3977961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUT3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="451" mass="51032" checksum="8F4A13F6CADE390D" modified="2020-12-02" version="1">MKRTHAQAADDEPIEVHDSGFMGPMVMFPTFPHNDTFVESRKFKLIAGPIANPDADDFTFNHAPNDYGVMDLQSARITANITITAADNTYLAGDQNVALNQSPLRLGWKSREILVNNQRINSLSSQENEIEFINHLTRETPLAYMPDQDITGCIHNTPGAANVSDSITQMLDATHATHVNKGLGKRYLLCKRDVPFKCYDFINLMGDNKRYVVSSFNMTIRLTRLEKVKTLMGAAAECALAKIRYSDLEIHIQAFKPKAQLMAAINNAMVQKGEEAKYYVRHFRYVPMAVAVGTRKINKNDLFTGARPTRMFIYIRTQARYNGAHTSNPNRMIFPNLEFLGVKINEAFVEPTIENSKEAYINLRRILNRKYDEMPFNYPDYLTDYGLIALDLSENKDSYNQILPNATSGVVSLEIRLNQPLAAASQLIVVGEFRNQLSCAYQTEARLKFAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVE1</accession>
    <name>A0A6S7FVE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A021018</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000454">
        <property type="protein sequence ID" value="CAB3982017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVE1"/>
    <dbReference type="OrthoDB" id="10059103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038757">
        <property type="entry name" value="BRAP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35259">
        <property type="entry name" value="BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35259:SF1">
        <property type="entry name" value="BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3982017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="39699" checksum="1D7E2E05AE4BC9B2" modified="2020-12-02" version="1">MDDTRVKKRLIKDKKPSMVTWTSDVITDLKSEMTVLKKRAYYANKVQHLKSSDSRKWMDCVNQMSGIKRSAPNNIKIVKNGTTLSGKLLPYWDWTTEFEKDCLIENPYFVNDDVMTEEDCEVCKKISGARLKNVSQDEMTNRYLFNAIPVVVTDATNDWPVDIQTFDLDNLKEIYLDTKLSEPERYCTFDAFNPEIESPHQLFALVEDQKLDHWQGYWENCEPATAKSIRKFYRRPYFLPPMAEAATENWIFAAYGSENNETKMQWEYVSFGASATWITQIKGQSQIILTATAPCDRICKKMSATLKPGETMVFVNRLWNFKRRPHPGQVSISLAATVGWDQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FW12</accession>
    <name>A0A6S7FW12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000294">
        <property type="protein sequence ID" value="CAB3980479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FW12"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="390" mass="44598" checksum="1D0AA42569D92F5F" modified="2020-12-02" version="1">MTLDYLLVVVFMVKNVNYVALDPGCNVVRFLDLFINQEAEELETRFNLDARSLKTIIDSMETEYDRQKFNAAARKKSQNLIEQNRLRNRASGASAKRKLDDIHEELIAKAIEQKTTALVGMDEHQSLLQPGTKHQSLLQPTEESGLTIRALPSHNFGDPRLYVTPSAYRFMSHKVKQMDGIQRVVLKDDSSVVTVRPKQYVGSSGSVWAWEHVYLQWKHPQLYEVHGQTLNPALRTLSAVARDNLFYFFDTTEKGDVECLAEDPLCKFRSYEKCCIEHVLNSLIDAQSLWKVSKDKVEAKEIALGNEIVDLLLEVTKELQNLRDILFCDAELARLFNLDWQMRIHLAVNDPCPAERTDMCIGDAVPDGGPLPYNRFQPHEDISESDMRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWB3</accession>
    <name>A0A6S7FWB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066375</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000669">
        <property type="protein sequence ID" value="CAB3983878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWB3"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3983878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="439" mass="50306" checksum="4D26BE68D854E88D" modified="2020-12-02" version="1">MSDMIDIVLPLKRTKVTKCDKPWLTSSIKELIIKRQKALHYYGKNSDAYKLWRNQVQQSIKSARFKYYAQSVEKLKNSNPSRWWKQIKSLGGISSKSCWYNQLLSNDIPNCHDLAEVFNCFLSRLTSHFTPLTREEEQLDFNVPGEYLIDANKVYNELRKIKTNKSPGPDMIPNKILKVFAYELAPVIMDIYNSSIIQGVFPMNLKRSVVVPIPKVSLPQSVEDDLRPISLTSQISKVMKGFTLTKLFAQIERKLDTKQFALPGKSTTHALTYLLHTILSSLENTSCSARLFFADFKKGFDLVDRNVIICELENLGVHPAIVRWIKAFLSNREQCLRIENSYSSWKKTNGGLPQGTKLGPLLFAVLVNSLLKDWPGRVKFVDDTTVLEIIPRCSPSFLPIIVDQISDYANERGMRLNPKKCKDMVITFLKYKLVENDIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FX19</accession>
    <name>A0A6S7FX19_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000460">
        <property type="protein sequence ID" value="CAB3982073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FX19"/>
    <dbReference type="OrthoDB" id="10581071at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035437">
        <property type="entry name" value="SNase_OB-fold_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="38737" checksum="66A1507FD0056C9B" modified="2020-12-02" version="1">MREIHAKSVRITEDDELEVVITHMLQLVALQNCVANCSQHALGCMVRAVHDKHMDDEGNEEKRIGAMLDQLQRDRNDMQYILYGESLSKCGCDKCTACVQFDNEFYDQLEENGKVSDAQPPSFEDRPLHCMDNKMRALNVKSRFAGLSSSSLENAYYFAQSTTTMSPPTISTATPTAVMYHVITRHVGLESLRAVRQMVFEAKEIYLECDEENIDGKPCVRYNRYQRALAHIWLKNEMGDLENLAIKLASAGYTMSFYVTGMNTKIDATMQAAMSLCYKAPSTIAGAGFGLFLQPHDTIPQGTHLCLYASRQATAKELQASSRDYALMAANGCWFDVEVENGNKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZ70</accession>
    <name>A0A6S7FZ70_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085059</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000563">
        <property type="protein sequence ID" value="CAB3982993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZ70"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="168"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20156" checksum="F3974BD38107ACC8" modified="2020-12-02" version="1">MNVFLRQYRATPHSTTNTSPSEALNSRKLQTLLPQLTEVPNPEADNSIHETDSEKEGKMKEYADKRRRSETSEIKVGDTVLIQQPKANKLSTPFNPSPYKVVARKGSMVTAERGSHKVTRNVSFFKKIKATFNPEDATVDESDDPIPHSQHNLKQQVAPPPPRRSQRNRQPPNRLRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0C0</accession>
    <name>A0A6S7G0C0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072833</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000834">
        <property type="protein sequence ID" value="CAB3985155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0C0"/>
    <dbReference type="OrthoDB" id="18487at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005044">
        <property type="term" value="F:scavenger receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.300.10">
        <property type="entry name" value="Tie2 ligand-binding domain superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002049">
        <property type="entry name" value="LE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042635">
        <property type="entry name" value="MEGF10/SREC1/2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24043">
        <property type="entry name" value="SCAVENGER RECEPTOR CLASS F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00053">
        <property type="entry name" value="EGF_laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="13885" checksum="E2028432F7D0568E" modified="2020-12-02" version="1">MPLDRLRVRSLACRTYVRLIVIAVGCPAGRHGYGCLYHCECPGTICDHVTGKCICNSGTTGIACEKGCKITHYGVKCSNKCECLPNGGCHFSSGTCKCDEQHFGAKCSHNVDKIENAHFPVYVFKPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0I2</accession>
    <name>A0A6S7G0I2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="18">3-oxo-5alpha-steroid 4-dehydrogenase (NADP(+))</fullName>
            <ecNumber evidence="18">1.3.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">PACLA_8A046472</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="20">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Converts testosterone into 5-alpha-dihydrotestosterone and progesterone or corticosterone into their corresponding 5-alpha-3-oxosteroids. It plays a central role in sexual differentiation and androgen physiology.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="17">
            <text>17beta-hydroxy-5alpha-androstan-3-one + NADP(+) = testosterone + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50820"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16330"/>
            <dbReference type="ChEBI" id="CHEBI:17347"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.3.1.22"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="17">
            <dbReference type="Rhea" id="RHEA:50822"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>5alpha-pregnane-3,20-dione + NADP(+) = progesterone + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21952"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17026"/>
            <dbReference type="ChEBI" id="CHEBI:28952"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.3.1.22"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="15">
            <dbReference type="Rhea" id="RHEA:21954"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>a 3-oxo-5alpha-steroid + NADP(+) = a 3-oxo-Delta(4)-steroid + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54384"/>
            <dbReference type="ChEBI" id="CHEBI:13601"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:47909"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.3.1.22"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>androst-4-ene-3,17-dione + NADPH + H(+) = 5alpha-androstan-3,17-dione + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:50816"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15994"/>
            <dbReference type="ChEBI" id="CHEBI:16422"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="16">
            <dbReference type="Rhea" id="RHEA:50817"/>
        </physiologicalReaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endoplasmic reticulum membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Microsome membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 18">Belongs to the steroid 5-alpha reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.22" evidence="18"/>
    <dbReference type="EMBL" id="CACRXK020000412">
        <property type="protein sequence ID" value="CAB3981636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0I2"/>
    <dbReference type="OrthoDB" id="5788137at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047751">
        <property type="term" value="F:3-oxo-5-alpha-steroid 4-dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006702">
        <property type="term" value="P:androgen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007548">
        <property type="term" value="P:sex differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.1630:FF:000002">
        <property type="entry name" value="Steroid 5 alpha-reductase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1630">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016636">
        <property type="entry name" value="3-oxo-5-alpha-steroid_4-DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001104">
        <property type="entry name" value="3-oxo-5_a-steroid_4-DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039357">
        <property type="entry name" value="SRD5A/TECR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10556">
        <property type="entry name" value="3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10556:SF57">
        <property type="entry name" value="3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02544">
        <property type="entry name" value="Steroid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015596">
        <property type="entry name" value="5_alpha-SR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50244">
        <property type="entry name" value="S5A_REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0221">Differentiation</keyword>
    <keyword evidence="6" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="12" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="13 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0492">Microsome</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0726">Sexual differentiation</keyword>
    <keyword evidence="4 18" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 18" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="113"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="152"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="3-oxo-5-alpha-steroid 4-dehydrogenase C-terminal" evidence="19">
        <location>
            <begin position="113"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00037789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00048292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00049166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00049397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRNR" id="PIRNR015596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF02544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="CAB3981636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="260" mass="30525" checksum="33FB62E3CF3B5A7F" modified="2020-12-02" version="1">MVPNFNEDQLHFCAWLIIGLAVFVFITSFCMTLPYGRYSPYNLKFGVNARLAWVLQECPSFLVPFAMFLISDGMREIVSLDVSPNVVLLLMFMIHYFRRSFIYPLWIRKTAPSPFYTFLPGFVVCTINGYMQGQYHLHVRRYPKEWFHSLQFVFGSFLFLLGFVINVHSDYFLTHLRKPGETGHKIPRGGLFEYISCPNFFGEIVEWGGYWLASSSFVAFAFFFNTLVVIGTRACHHHRFYQEKFEDYPKNRKALIPFIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G5G1</accession>
    <name>A0A6S7G5G1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000924">
        <property type="protein sequence ID" value="CAB3985803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G5G1"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016706">
        <property type="term" value="F:2-oxoglutarate-dependent dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015095">
        <property type="entry name" value="AlkB_hom8_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09004">
        <property type="entry name" value="ALKBH8_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="371" mass="42018" checksum="015B13F1C859AA02" modified="2020-12-02" version="1">MDIYNTSVLQGVFPDQLKRSIVVPIPKVSPPQTIEDDLRPISLTAQVSKVMEGFMLQSLMSEVGLKLDPKQFALPGKSTTQALVYLLHLIHAALDQGHCSVRIFFADFKKGFDLVDHNVIIDELLKLQDWNGRIKFVDDATALEIVPRCSPSLLPILVNDVSQYASSRGMKLNSKKCKEMTISFLQYHLPLDNAIYIDGSPVQSVSSFKLLGVLLREDLSWCDHVDYVIKKANSRLYALRKLKKAGLSDKDLVTIYSSFIRSRIEYASPAWSTLTQGQSDLIESIQRRALRILLPEMSYQDALNYTGLKKLSTRRHNSCEQFIRKLKLDNGPINPLKDVVATRIHPNTHNYNLRPNQAGHSKRTQNVFKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GAS8</accession>
    <name>A0A6S7GAS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077382</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000890">
        <property type="protein sequence ID" value="CAB3985606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GAS8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="230" mass="26211" checksum="EED134774BBA5966" modified="2020-12-02" version="1">MSNGKSAQTSNEESAKAQSYPGIAFFIVYKECETCSEEILFSALHKEDMELEITPIRVRSKEMEKAAKQLFNVVKDHNNPTIQDMLDVSNVYCYRNVQDWSSDSDEDDTEVEELLQFGCVRFPVVPCCLVVDNVNDFHDQLNTSVARLESDGLVVDLAETRVLDPTTSCLSSNNDVTKTIFKIQKVMQICNHGLYKSQIYVKPDKATMTFVHMMDVMSYLHRLNGQRRVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJQ9</accession>
    <name>A0A6S7GJQ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A063178</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001998">
        <property type="protein sequence ID" value="CAB3992188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJQ9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="180"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="221"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3992188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="656" mass="74510" checksum="179FCABE6D9D88A8" modified="2020-12-02" version="1">MASLLHSSAAHTSRTKQRNSFLSQGLPHIRISGCNKTVSEARANLEDKISRSTSSSKLSSYASLLCLLDELTVKNCLPFHLAFDEYAAKLESKASVSKRNAKVQFRDLLQTNGLPVIIIYARNDLYVLLLEKPIDNISLCKGIDILGEKNLTDTSVGIQRHTLLFLSSLFPMLKKLLSSAIDFAVVYFILSMLLTGTVMKMFLGINESFASNINTETLKFVQEVEQRENEACQEAEKSLEDLISKISKEIEKDSEKLALKRKRCDAEEINDTEFDIANKRKRLEQLKSTNASKHKKRSKRRIFNTWKSGLRRQTGKNKHRTKIDRGAEKAVYNVLYEQLKAHERRWGDEGTGYLEDSRIQGRELRRIANDYLKAKGLPLVKSMETVRSWGKPRNKRSRQASLHRGKGLWKAKRSEKRVQMAIDDKAYLRCGTSEGFSRPIHTPIQISAENLQFKLPGSDYPQDCGYVSPGVILLVNDMKEVGYKNTDKFVRENHTLYLFPEEHEIRNDTETTTLTRVTDPVGKSACTSDSLIDLSGNKFDTQLQDEHQDFQPLSRGILTWLLVVRDSLFQFEMMNVEDDYMRCVEGVDYLEHKSKTNRAGNPAENAVKRLASQVVASWTVFSGIGGLRGDPDRRCWSSGDLTKTKQGLSRKLSGKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GM33</accession>
    <name>A0A6S7GM33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013056</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001241">
        <property type="protein sequence ID" value="CAB3987837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GM33"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016706">
        <property type="term" value="F:2-oxoglutarate-dependent dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015095">
        <property type="entry name" value="AlkB_hom8_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09004">
        <property type="entry name" value="ALKBH8_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="228" mass="26543" checksum="210F40FE46524EBE" modified="2020-12-02" version="1">MPLVVNEISDYALERGMELNYKKCKQMLINFLKYKGSDDENPIYVAGKPVETVSSFKLLGVWISNDLSWNTHVDIVLKKANSRLYALRLLKKAGLQASDIVQIYISFIRSRIEYASPVWSSIPKSLSDILESVQKRALRIAYPDLLYDEALEISNLQYLSTRRDISCKKFVESLRRDVSPYNSLTQIMEIRPGVKTHDYDLRNDRTAEQPLWSETTERLKNFVTRKYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRK0</accession>
    <name>A0A6S7GRK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Multidrug resistance 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A019427</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCB family. Multidrug resistance exporter (TC 3.A.1.201) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002510">
        <property type="protein sequence ID" value="CAB3994658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRK0"/>
    <dbReference type="OrthoDB" id="6500128at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015421">
        <property type="term" value="F:ABC-type oligopeptide transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090374">
        <property type="term" value="P:oligopeptide export from mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18577">
        <property type="entry name" value="ABC_6TM_Pgp_ABCB1_D1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18578">
        <property type="entry name" value="ABC_6TM_Pgp_ABCB1_D2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03249">
        <property type="entry name" value="ABC_MTABC3_MDL1_MDL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000205">
        <property type="entry name" value="ABC transporter B family member 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1560.10:FF:000018">
        <property type="entry name" value="ATP-binding cassette subfamily B member 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394">
        <property type="entry name" value="ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394:SF27">
        <property type="entry name" value="ATP-DEPENDENT TRANSLOCASE ABCB1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3994658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1138" mass="125554" checksum="CC253FD7E77B06D9" modified="2020-12-02" version="1">MHHICFLLCSEESNQIQLVTIRELFRFADRTDSILLTLAVIGSIIYGIIIPAQFILFGKMINDFVAYIINENYDLSDRLPDLEASTTRTAGFYVMLAVGNLVFAWLGMGLFALSAERQVHKMRLAMFQSAIYKNIGWFEMFSVGELNTRFTEEMKIILDGIGSNFSSIISSVVCFGAGYLIGLILCWDLTLILLATFPLMMLCGIVMTKMSGIYTNKELKAYAKAGKIAEQSISSIKTVVAFGGEHHQVKLYDENLIDASKYAIKKAVSLGLGMGGFQLILYADYALSVWYIIKLARETETTPGDALAVFFAVTMGSMILGQTAATCFEALASARGAAFVVFQTIDQKSEIDASSSAGKKLENISGALEFCHVNFAYPRRPAFEVLKEFNLKIPSGKCVALVGESGCGKTTIGKLLQRFYDTDRGSVLLDHQNIKDLNVSHLRRHIGVVNQEPVLFSTTIAENIAFGREGVTQHEIEKAAKIANAHDFIIRFPKGYETLCGERGTQMSGGQKQRIAIARALVRNPKILLLDEATSALDSESEAAVQEAIRKAGQGRTMIIIAHRLSTIRNADIIAVISEGHVVEIGTHEELLVLDGLYSSFVKLQANYDDDVEEDGSSFDDEQFFHITDNGARKLTSLVSTIDGSQAKTLLVFDHVDNIKPISFTKILKWNAQEWNVLVLGCIGAALYGSYPFLYGIAFGGVLHTMRYNSRIEEESESMDHDSKHWAVFFFLIGVESGLGIFLQNWCFSSAGEALTKRLRKAAFSAFLRQDMAYFDSPENGTGVVCSRLATEVSSIQGATGPQLGLFVSSMVTIIGGLIVAFAASWKLTLTMMAFIPIVIIAITLINYFLGANDCGKAADCYAKVIEESFANIETIASFNRESERFVKYHEAAAAMHRKARKSSHYVGVITGTIMAIINLSFAVSFRVGGYLVTEHEVTLKDMMKSIFTIVLSAIVIGQVISITPEYSKAKRAASRLFNLLERVPFIDSCSNDGKKPNHCHGNLSLSNVIFRYPTRRDYKVLRNFDLSVQSGQTVALVGTSGCGKTTLMSLIARFYDVTVGRVIVDGNDIKDLNLKWLRSQIAIVSQEPVLFDMTIRDNIAYPDSTGNITDKEVIKAARLANIHEYIITLPKERIKTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSP5</accession>
    <name>A0A6S7GSP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029586</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002551">
        <property type="protein sequence ID" value="CAB3994843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSP5"/>
    <dbReference type="OrthoDB" id="5989505at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="33526" checksum="3B4C73DB93F0D335" modified="2020-12-02" version="1">MNSRTNELMPDFHRQSRTELTGNRTRHLITFNPNSAKPGEEIYVNIPKLKPDSVLVPDSMALIFDFKNANEKSWFRNNLGKLLQKRLEIRLAGEKIYDNSGESLMEIYKDLWMDEKQRADKIEDGIATEAVRKKISKDDEANADADATALFGIFGTKQRIKINKILGDHGLYAPYHSANDLQYVITLPQASEIMNTQSGETVEGYTLENIELEYESIENNKLARKSENLYGAERKLSFEHTTLMKKTEWDKNTTIVNETVNVPRTVNVPRFQILKKSKSRSKVYPMSFTVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWK6</accession>
    <name>A0A6S7GWK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">DNA annealing helicase and endonuclease ZRANB3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A002600</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001408">
        <property type="protein sequence ID" value="CAB3988930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWK6"/>
    <dbReference type="OrthoDB" id="5990551at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043596">
        <property type="term" value="C:nuclear replication fork"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004520">
        <property type="term" value="F:DNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031297">
        <property type="term" value="P:replication fork processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002711">
        <property type="entry name" value="HNH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036443">
        <property type="entry name" value="Znf_RanBP2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45766:SF3">
        <property type="entry name" value="DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45766">
        <property type="entry name" value="DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01844">
        <property type="entry name" value="HNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90209">
        <property type="entry name" value="Ran binding protein zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01358">
        <property type="entry name" value="ZF_RANBP2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50199">
        <property type="entry name" value="ZF_RANBP2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="476"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="484"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="506"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="524"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="549"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3988930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1138" mass="127000" checksum="A05E6A43466DB3A0" modified="2020-12-02" version="1" fragment="single">IYVTSTALNGKLQGLDVEEGSESQSKLLEAFSAWVMEDEDDGVAEDDFLFTHSQKKRKQDVLQRSLTEFFHSPSSTKCRKIDSGKEWSESQDSSTRKEQNCEAVEKEIQATPEPKICIIVDSESDEDSSLRKTTKKTYKLGKQKSLEMPGETTTVQASESQEIAWEIAREITKIDADESSKPASAEVVDMLSSYTRLLNKSSKSKGRNLEDACKGNNVDGVIELVAKSERENSSNLVENGKEFGKLVSDSKESVGNGCPSENSVQTVGNVSSVVEQNNIVIMASDCTSKNHSCFSSNPMTSASISTVVKTSTSGQTIDDVTSEVKEAGPLSLTPNSALDKHNDCSKTSPIARRELAIDSGNFEVKQSKPLPTIALGKHDCIFDSKPIAARRELMVDSVESQGTQTKPVPLVPTSAEDRNDFKTWCCSLCTFNNNAFLRVCEMCDTPRYKSRRKSMNTKCSTDEFVARKQLKILEQCSGLDQRNSGHKNGRKRSKNSNKGSVAVSRGNEESDGKRTKDKTDLSVVANSSEQSTGSSLSVDDSNKNTSAEHLSESKPEIPVKPEIPVKPEIVVEPEISVKHEIPVKPEIPVEHEIPVKPEIPVEHEIPVKPVIPVKHEIAVKPEILFKPVETYELDTSDVDLFASVPLNEFWDEIMTSSCEDELMTSSCEDEIMTSPCEPDTATENPFGTESEFDDITDDDWWVCMSCKNYNYDDAADQCETCGLKKPSDCFEDLVTGLEDDDCWRCEDCGEFNFGDDVIRKCTKCCHGDKKDQKSLVEQYKNLSHLIVDDEGLDGTIGTPDEGTREHIGKPEVIENLMFRLSNYTDRVFLYDGDGDPLNCNVNILEMEGSDTGNVPALLAEPSNRKQILRFARQWKSLKQRNRRMIKKAGVIFDDPYEALEAIKKERKLCTSRFPSKEKLQAEVLDAAQAKNGTVRHCVKPKGRKTGGCSVEEDVSATNDQHTRWIQAVDENGRPLCLSCKGLVDTKNTNCLWDERFCSHKCKELYQCRISGTRVRQQLFEDEKGVCQKCGCDAHELYRTIKLLPKADRRSYLENTPFISLPVTLLNKIIVDPKEGMFWEADHVVAVAEGGGECDLENYRTLCVPCHRLVTAELRERLRTSRRKRRIAGVPDITSFFCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H3T2</accession>
    <name>A0A6S7H3T2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002829</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001819">
        <property type="protein sequence ID" value="CAB3991280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H3T2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7603" checksum="808EE468E3CC1AB8" modified="2020-12-02" version="1">MINGYLIASENHISDDALSTRRTDCFRGWNWTEFKDLEPFWKPVLSTQETIFERCTYNLSRNLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H966</accession>
    <name>A0A6S7H966_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ankyrin repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A000206</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002113">
        <property type="protein sequence ID" value="CAB3992737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H966"/>
    <dbReference type="OrthoDB" id="194358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3992737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14050" checksum="25116FB14E8612E7" modified="2020-12-02" version="1">MLTCKKLSEVLWYLPTAEQVVSLLLDHGAKVNQQDFYGRTALHYAFESRYDNDVYFPEEKLAQKQRIVKILIQHNADIYLKDSSGLYAFDMARREGHESWLRTAEASLTGTRSKNGTTSCSIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9Z1</accession>
    <name>A0A6S7H9Z1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004998</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003702">
        <property type="protein sequence ID" value="CAB3999903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9Z1"/>
    <dbReference type="OrthoDB" id="10525726at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="13044" checksum="40AAA3F79573470B" modified="2020-12-02" version="1" fragment="single">VESGVSHVSGRTIRYCLNVDGYWYLQTRKKSLLHAKDLKSRIKFCKKIRKQKLGDEFWRTGVSFYLGGKGFQYKSGYPYDQAHAPGAREWRKRGEGLKFICNPQEKRKVVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HB11</accession>
    <name>A0A6S7HB11_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LicD/FKTN/FKRP nucleotidyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002257">
        <property type="protein sequence ID" value="CAB3993410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HB11"/>
    <dbReference type="OrthoDB" id="444255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009100">
        <property type="term" value="P:glycoprotein metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007074">
        <property type="entry name" value="LicD/FKTN/FKRP_NTP_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052942">
        <property type="entry name" value="LPS_cholinephosphotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43404">
        <property type="entry name" value="LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43404:SF1">
        <property type="entry name" value="MNN4P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04991">
        <property type="entry name" value="LicD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LicD/FKTN/FKRP nucleotidyltransferase" evidence="1">
        <location>
            <begin position="127"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="325" mass="38159" checksum="4054AA401B09CCC7" modified="2020-12-02" version="1">MALRNFKCIFKVIFATEILLILNILANWPYLFNPVLLKPWEMHNGQESMTMANSTTGNKIVGRKTRFFNYSGDKYETTSESKTHTHGKMVPSDKIMENIYGSDCPFNPYKQTLNYLFNNWMALDNYYNFSSFLCGGSLIGLLRDGDLIPYDRDIDVCVTMENYQKVRAIHSAKPFDYRSSQIYLAVQEDFSNNNVSSRTLVDCRGRIAQRARDPCSFDTPGARLISRRVYVDVFVFREHGRRLRDHEYGKNHLKTDIFPLKHCTFMGVETKCPRNEMSLLLKYYEPDVLTKPHYKCQNKTWVATSQDANKQFKIWFRKRLKRHYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEE9</accession>
    <name>A0A6S7HEE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Deleted in malignant brain tumors 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A074896</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002464">
        <property type="protein sequence ID" value="CAB3994440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEE9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.250.10:FF:000006">
        <property type="entry name" value="neurotrypsin isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.250.10">
        <property type="entry name" value="SRCR-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001190">
        <property type="entry name" value="SRCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036772">
        <property type="entry name" value="SRCR-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071:SF18">
        <property type="entry name" value="DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48071">
        <property type="entry name" value="SRCR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00530">
        <property type="entry name" value="SRCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00258">
        <property type="entry name" value="SPERACTRCPTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00202">
        <property type="entry name" value="SR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56487">
        <property type="entry name" value="SRCR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50287">
        <property type="entry name" value="SRCR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3994440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="12787" checksum="13BFDCBAAFF9D8D6" modified="2020-12-02" version="1" fragment="single">ISLRLQGPSSGNGTGRVEVFFAGKWGTICGDYWDRNDAIVVCRQLGYLNAVRALSGSDVPDGSGQIWLDNVFCKGSEQNLTSCAHRRWGDHNCWHHQDAGIECSSTGKRCRSLDEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HEI0</accession>
    <name>A0A6S7HEI0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069384</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004158">
        <property type="protein sequence ID" value="CAB4001707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HEI0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46954">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46954:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="25736" checksum="68FC7AB7AF1BCFE5" modified="2020-12-02" version="1">MSDAFKLHQSLIRGYEKAFLHKNGQAVQQEVPKVWREIKTNCKTRTELTAATEKQLAEWKQIEMKKKGSLLSFWSKVPTQSTNKVALPENAGTETSSDKNNALVIEVIQQPDISVDKPMPTASLKDVPAPKQQELHKELSQLKSDLVVVYGKRDMNMMTPDDYKEISKKKQMLKNLEKKLTARKNATERQRKLRLERKRAMEEIDPEIRKKALRKGRGYSWST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIM8</accession>
    <name>A0A6S7HIM8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015313</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004514">
        <property type="protein sequence ID" value="CAB4003020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIM8"/>
    <dbReference type="OrthoDB" id="5973798at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043235">
        <property type="term" value="C:receptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007169">
        <property type="term" value="P:cell surface receptor protein tyrosine kinase signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001927">
        <property type="entry name" value="Receptor protein-tyrosine kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050122">
        <property type="entry name" value="RTK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416:SF600">
        <property type="entry name" value="PDGF- AND VEGF-RECEPTOR RELATED, ISOFORM J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24416">
        <property type="entry name" value="TYROSINE-PROTEIN KINASE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00109">
        <property type="entry name" value="TYRKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15811" checksum="285585BE54DFB393" modified="2020-12-02" version="1" fragment="single">GLVPFKWMALESIRDSLFTEKSDVWSFGILLWEIFSLGATPYPGMYFNDVHQYLLQGKRMDPPIQCPEDINDVMSMCCKENPEDRPNFHSLKDLLYEILDCKEIPQTSAYNKDIVNVPLKSNVIASEEDVSENELFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HR47</accession>
    <name>A0A6S7HR47_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A001953</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005811">
        <property type="protein sequence ID" value="CAB4007496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HR47"/>
    <dbReference type="OrthoDB" id="6114255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="125"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="552" mass="63094" checksum="65DE697BF085A0C9" modified="2020-12-02" version="1">MGFENIDPVVNQYIRKWLEIPISRTLSTVFLTRNKFGQSIYPPSVKFIQCQTVLRKALKLSPNQSINELWKSTNTHTNIQYDFYNSTKEVLKDFRSEHEDKLQNQLTCQGSFFSSVTKFSLSHLSKVWSTAQSKLPKTIYNFTIRYINNSLPTRKNLSRWGLSSSSECSFCLGPESLLHVVAGCRCYLDRFTWRHNSILNFLANTLQTVNGSALYADVPGFKSPSILTGDTYRPDLLLSLSNGSLYVVELTVGYETNLENNVNRKKAKYKELVKQLNENFNEVNFINLSMSSLGIFAQECSTFLEMLGNVGLDKNYQTYCVRKMMTIAIRKDRLRNQLTCQGSFFTNITKFSLSKLTKLWSTCQSNLPKNIFNFTVRFNNSLPTRQNLARWAISTTSECTYCLAPETLLHVVAGCQLYLERYTWRHDSVLNFFETNLQTVSGSCLYVDLPGYKSPSIITGDCCCSDLLLSASSGCLYIVELTVGYESNLEKNVQRKKAKYSELIREQSEYYEKVKFINISISSLGVFAKECLTFMDMLNDLGFDKNPPIILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HS02</accession>
    <name>A0A6S7HS02_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peroxidasin homolog isoform X7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003283">
        <property type="protein sequence ID" value="CAB3998150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HS02"/>
    <dbReference type="OrthoDB" id="5953547at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016706">
        <property type="term" value="F:2-oxoglutarate-dependent dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015095">
        <property type="entry name" value="AlkB_hom8_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09004">
        <property type="entry name" value="ALKBH8_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00584">
        <property type="entry name" value="TLDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="30445" checksum="AB29F2649F8D7771" modified="2020-12-02" version="1">MLQLNCRKCKELPITFSRSRNSPSLVNVEGSTIIPVSKVKLLDVTINSTLTWNDHIEEIVKKASRKQYFLVQLKRAKVPAREIVAYYCAFQLDESTILANEQVELANKLREWLFGTGKWRICWRATEHGWAASTFHEKCNGEKPNLVIVKFVKDGKNLIFGGYSTETWDGKGYASAPGSFIFSLRDKQDLAPFKAPLKSENDWQAVYRSSSYGPTFGKDHDLKIAGDAASNTNSFTNLGQTYQLPPGYNQTKTRNHFTPYEIEVLYLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HU88</accession>
    <name>A0A6S7HU88_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011544</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005648">
        <property type="protein sequence ID" value="CAB4006930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HU88"/>
    <dbReference type="OrthoDB" id="10068389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="336"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="734"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="734" mass="84226" checksum="485A4410C531A791" modified="2020-12-02" version="1" fragment="single">MTPNLLLADIQKAFLQIGVKKTDRDAFRFLFEIDEKEEHFRFARLPFGVEASPFLLGATLGYHLEQQPTGFEETVTALKENTYVDNIMKTGRDTDDLRKFKEESSIILEDAKFPIHKWESNIACLEDENMPNPSKILGHVWDKQEDTLEFEAATMPENQPITKRSILSRLGRVHDPLGMVSPTMAEGKLIFRDASEERKGWNAEVSESLKRKWIKWNNQMKNVKVPRAITKKSDVIEGIQLHLFADASNLACCAATVAVVEHKSGTLKGLLTSKSRISKKNTTIPRLELVSGQMAANMARNLYHALLRLPVKSKIDNQISNNEIHIDGFNIIRKDRNRFGGGVVLYVRQNISFSDRIDLIPDELEMVCIELSLPYNKSLLISTWYRPPNPPTNKFDYWASFLAKCDNEDKELILIGDLNCDASKTIPDPHTCKLQFLCSLYQIDQLIKESTRLTPKSATLIDLILTNRPENISRSGVIHLGISDHSLVYAVRKFTLPNGRQKIRQVRTFKNFVENDFIRDVSQLPWEMVYQFGDPNLCWQVWKSLLLDALNRHAPLRHKRIRNTPVPWINPQIKELMRKRDYHKKKAIKYDSESQGELYKTLRNEVNINMRKAKSKYFCDKIQASSQMGDSKSGWAWINSLLGRKHKNANINELKVNDDIISDDKSITETLNEYFINIGMKMAAESACQRTDALNDQVIYESTVLLPKENFHFADITIDSVSKRLQKLNVSKAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXR5</accession>
    <name>A0A6S7HXR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A060854</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006428">
        <property type="protein sequence ID" value="CAB4009359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXR5"/>
    <dbReference type="OrthoDB" id="6117306at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051077">
        <property type="entry name" value="Ca-dependent_lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24024">
        <property type="entry name" value="PULMONARY SURFACTANT-ASSOCIATED PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24024:SF18">
        <property type="entry name" value="SHORT-CHAIN COLLAGEN C4-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043904837" evidence="2">
        <location>
            <begin position="24"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4009359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="274" mass="29424" checksum="766D829DAA99E510" modified="2020-12-02" version="1">MKFLNQTVLMIWSFLLMMDMIVGNIIQSDESRVIAKRDTKETKTSSYRGLPGLPGRDGRDGRDAGLRGLPGKPGKAGSAGAPGAKGEAGGSGGVVFTRWGRKHCPQTSGTNELYSGVMGGSWYHHHGGGSNYLCLPLNPIFDKITSGAQGYSYMYGTEYQIDSNTNIFPQNVHDHDAPCAVCHTESRGSHLMIPARNVCPSGWTLEYKGYLMSAHLGHNGRTQFICVDGNAEGTTGSHSDHNGALLYFVESQCGSLPCPPYGNGKELTCVVCTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZ79</accession>
    <name>A0A6S7HZ79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072739</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007074">
        <property type="protein sequence ID" value="CAB4011224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZ79"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="22783" checksum="54529A77A649D4A0" modified="2020-12-02" version="1">MYSRSYCNGNSCVFLTNDVKIGSKIYKIEAGKYELSKKKIRMIYPSTIRYSVRKYVYNDDLERVVNVIVAIRRFMFSENLKCCPGIRFLTVRVCSVLGCEPIEWLRDIYPTNEKAKHQFLFYGIIVPTLSIDVSGCIYYKKWDKDVRLWCGRKYNICIGYEWKSWDDRWTEFWWKENNELNNGFGKCGRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I898</accession>
    <name>A0A6S7I898_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon 412</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A026226</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004435">
        <property type="protein sequence ID" value="CAB4002731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I898"/>
    <dbReference type="OrthoDB" id="6091153at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45823">
        <property type="entry name" value="T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45823:SF1">
        <property type="entry name" value="T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="381"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="424"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="45"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="455"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4002731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="502" mass="56946" checksum="D2E03056B63B7280" modified="2020-12-02" version="1">MPVTRSQRGELRDEFDQFVGQGADDERLSEHEASEIGLEETLHSVKGVLGEIKDEESKLKELYKQVSGENRVLAERIERLESQDTVGWINRQADLETRINILQGNIERLTATSRSYEEIERQLETSSAEIRSVRTHFTESFEGLLSAVEGLDKELQSTVADLQGKINDISKLCLPEIPKAKSTEMKTGRRDLSFNETRGSCQQVKESNSLRKQKPVQPCPKFSGKTSWEVFQAQFSIAAEMNGWQDDDKAVFLATALEGRAAMVLGSLSDKERRDYNKLVTALTVRFGMAHQSELARAKLKCRSRGKEESIPELAESVETLTRAAYPDASSDLQDTIAKDNFIDALLDEDMRLKVRQARPQSLQAALENALELESFQLASRHRNRTPRGPSLNVRKVNENIPPESDENSSIKRLELMIDRLLQELTKNPRRRPPRPPTSAKCWSCGEPGHLQRNCPKESKEQTNEPKNEDSKEMEAKKEDQQRKLRREASEKSRPGNGRWSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9H0</accession>
    <name>A0A6S7I9H0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020483</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007590">
        <property type="protein sequence ID" value="CAB4012660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9H0"/>
    <dbReference type="OrthoDB" id="431588at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7541" checksum="13F29F2509D8CD8E" modified="2020-12-02" version="1">MATSKTTAAHKSVIEARNKAYKEYKSNFFACVNEINTHGDNASYDEERWEEKWHLSLQRIQNLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IAP9</accession>
    <name>A0A6S7IAP9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007772">
        <property type="protein sequence ID" value="CAB4013140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IAP9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="60" mass="6730" checksum="A377AB03A5018FFB" modified="2020-12-02" version="1" fragment="single">LLVFLFGFAYSRPSANNEMYFEAEGTALGDGKKCIEMMDFCKTDDDKCCNDNLRCLPYGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IC78</accession>
    <name>A0A6S7IC78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056578</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009158">
        <property type="protein sequence ID" value="CAB4016535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IC78"/>
    <dbReference type="OrthoDB" id="61560at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006553">
        <property type="entry name" value="Leu-rich_rpt_Cys-con_subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00367">
        <property type="entry name" value="LRR_CC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="10890" checksum="86DF5B1A3D6BFBCB" modified="2020-12-02" version="1" fragment="single">LTDSSVQYLAGVCHYIESLNLSECGLLTDRSLRFVRKGLKLLKDLNVLYCSNITKASVKKLLTRCQHILHSTDQPPLLVSSIIDPKVNFYNPGSVLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IEN1</accession>
    <name>A0A6S7IEN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071312</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008719">
        <property type="protein sequence ID" value="CAB4015449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IEN1"/>
    <dbReference type="OrthoDB" id="5985458at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22642" checksum="5CB6C149CFB74A02" modified="2020-12-02" version="1">MTGKGPNLIGRNWLQKIKINWKNLFQLKEDKNTSVKVNKLLEKYEKVFHEELGTFSGPKAKIYVAEDASPKYYKARPVPYALREKVEKELERLQEEGTIEPVQFADWAAPIVPIVKDHKSIRICGDYKVTVNQAAKLDNYPIPKAEYLFATLSGGEKFTKLDMRQAYQQILLEDESKKYTTINTHKELFQHNRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHE2</accession>
    <name>A0A6S7IHE2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peroxidasin homolog isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A012423</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009387">
        <property type="protein sequence ID" value="CAB4017067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHE2"/>
    <dbReference type="OrthoDB" id="823504at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.640.10">
        <property type="entry name" value="Haem peroxidase domain superfamily, animal type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019791">
        <property type="entry name" value="Haem_peroxidase_animal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037120">
        <property type="entry name" value="Haem_peroxidase_sf_animal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11475:SF4">
        <property type="entry name" value="CHORION PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11475">
        <property type="entry name" value="OXIDASE/PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03098">
        <property type="entry name" value="An_peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50292">
        <property type="entry name" value="PEROXIDASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4017067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="37103" checksum="C46894B8D51D3602" modified="2020-12-02" version="1" fragment="single">MKHLHGILLFLAFVNIEGKKFGSDEYAIILTHDYPKGGIGQITVENAPDETVYSLSAQASRLVKIDSHTGQLELLVDSAQVDDLKFEIIAKFQSQTERTKVNIRVLSLYYGNQFSSDAINAVRRSLEKDKKTPEGAASIFIPAGLDLLLQQVAAGDPVDGISEAEIIVERTIQLVHSIIIQKFEKYFGKGAVFAFLRTKELFSSAVITSLDKESTCIVSTTPVTCLKKSIYRRFDGKCSNRKQPVAGGTGTPLVRLLRAVYYDPDGLNDPVGFPNQPNPPTLPSPFEVSKDFIKDEVAGTTEDQELTPLMMQFGQFMDHDFTLSAEESGASQCLTIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7II48</accession>
    <name>A0A6S7II48_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">protein-synthesizing GTPase</fullName>
            <ecNumber evidence="2">3.6.5.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A035999</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>GTP + H2O = GDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.3"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.3" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020008973">
        <property type="protein sequence ID" value="CAB4016110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7II48"/>
    <dbReference type="OrthoDB" id="1045173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005850">
        <property type="term" value="C:eukaryotic translation initiation factor 2 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001731">
        <property type="term" value="P:formation of translation preinitiation complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01888">
        <property type="entry name" value="eIF2_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03688">
        <property type="entry name" value="eIF2_gamma_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd15490">
        <property type="entry name" value="eIF2_gamma_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000009">
        <property type="entry name" value="Eukaryotic translation initiation factor 2 subunit gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000011">
        <property type="entry name" value="Eukaryotic translation initiation factor 2 subunit gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000065">
        <property type="entry name" value="Eukaryotic translation initiation factor 2 subunit gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050543">
        <property type="entry name" value="eIF2G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015256">
        <property type="entry name" value="eIF2g_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044127">
        <property type="entry name" value="eIF2g_dom_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044128">
        <property type="entry name" value="eIF2g_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003077">
        <property type="entry name" value="PRK04000.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42854">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42854:SF3">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09173">
        <property type="entry name" value="eIF2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4016110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="465" mass="50790" checksum="C633E6D9D0628C0C" modified="2020-12-02" version="1">MSAEGGQPRLSKQDLSTLKIEQLHPLTPEVISRQATINIGTIGHVAHGKSTVVKALSGVQTVRFKNELERNITIKLGYANAKIYKCSNQSCSRPSCYRSAGSAREDVLPCERQGCSGKSQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVRESQAKEQYLQIKKFVEGTIAEGAPVVPISAQLKYNIEVICEYICKKIPIPLRDFTSQPRLIVIRSFDVNKPGCEVQDLKGGVAGGSILRGVLKVGQEIEVRPGIVSKDEKGKLRWEPICSVIVSLFAEQNDLQYAVPGGLIGVGTKIDPTLCRADRMVGHVLGAADALPDIYTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVIAVKVDLAKIVLTQPVCTEIGEKIALSRRVEKHWRLIGWGQIRRGLTMKDGAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISF4</accession>
    <name>A0A6S7ISF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070459</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010663">
        <property type="protein sequence ID" value="CAB4019870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISF4"/>
    <dbReference type="OrthoDB" id="6158878at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="23924" checksum="751105E886EB1925" modified="2020-12-02" version="1">MRILNGRTLGDSFGKPTSHHKNGTSVVDYIICDQELTQTIENFIVKPPTYLSDHSQIVTWMKTKQHINSTSNITPTPISTTHKLPYQFKWENNSPISFTEALKSVEIQQKLESLINYDTPLTKEGVNTFASRMEDIILHAGKSSLQIKKTKFRNKISNVCNKKWFDKECRLKRHSVRKLANQKHRDPLNNDIRNEYHFALKITKTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J079</accession>
    <name>A0A6S7J079_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012640">
        <property type="protein sequence ID" value="CAB4023718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J079"/>
    <dbReference type="OrthoDB" id="5984884at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19321" checksum="F01D670B363740D7" modified="2020-12-02" version="1" fragment="single">KFGEDDFDQESVSNVLESFVCEVYARNSNCRTFGELRWELFRTKNLESEKLPPTLGALTPHIQKANAISAINKGYRDPRPQTPLLTDNGWETISDGTISPKKCLEPPAPESVEVSLSSVDVVVSAVQLVVFATRITYPAHHFANVVTAATLVTLTYQIRMETLMNKQDRWTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J620</accession>
    <name>A0A6S7J620_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086503</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013583">
        <property type="protein sequence ID" value="CAB4025401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J620"/>
    <dbReference type="OrthoDB" id="370281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="26961" checksum="73522B84ECE7AC7A" modified="2020-12-02" version="1">MFLPSDLAENYDENQPSIGNIDSDGEINKPKSGGTITGCPPSVVFCLYFLVFLLVILYNVPTTYIPLLANYHLGLDLSHVKLLYINSSLVTFVAFLATYLLVERISEKNYIVFGVVSLIFEILPIFYFALFWDNDMLSVNAAYLLLVSMLFMGAQFVTYALVCSLLSKLTPAEDAAFYQSLTYTVLHASIILSRILAGATFYRMPMMYTCICITICWLFGLIWLSIEYKNLENDENWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J871</accession>
    <name>A0A6S7J871_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087976</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007885">
        <property type="protein sequence ID" value="CAB4013431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J871"/>
    <dbReference type="OrthoDB" id="9991317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098">
        <property type="entry name" value="RAPSYN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098:SF108">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50293">
        <property type="entry name" value="TPR_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="883"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="883" mass="98135" checksum="23ABD542706DB33A" modified="2020-12-02" version="1" fragment="single">TGNGTRFFKRGAANSICDHVTKIYDILLKHDKTLQLCYLCGQQCLLDGNGTNKAGNPGRPIISGCDGPTIQRISLDMPHPLRGVLLRSGGFICVTGAGAAMNAWVSPFVEIYGTFSLYLSSINRNLLICQNHYFAVLAQGSDCSQSSICTPDKVYLISDMDDNLAWWHWYISREYSSTWTDHTLFAPVYETGKRDVCQPLSPRTKKVVFETKIVIKNFSKAITYTRAKIDSSVFKSVQMSSIFSRRGVVALFFCSREMDINQEKQGEYQKAIDYYKKGLEISTAIGDRLGESSSNGNLGNAYLRLGQYQKAIDYYKKGLEISTAIGDRSRIANNNGNLGNAYLSLGEYQKAIDYYKNGLEISTAIGNRSGIASKKCNLGNAYLSLGEYQKAIDYYKEGLEISTAIGDRSEIARSNCNLGNAYVSLGEYQKAIDYYKEGEYHKAIDYYKKGEYQKAIDYYKKGLEISTAIGRRSRIASNLSNLGNAHRCLGEIFLDFVPDQNKLSFTKQYFISHTSLMSCFLSFERIEAALLVIDLGMFDYALFAFDLKDSLNVWVLNGEVIFRKLDACLETLECLIMELLGRLKVGVDRNSSFCKPDPVFDTHNQMIFPFEIRKQKPPLSKNALQNTACYGHLIDPVKNLVNGNRLVVVPDPQLFFTPFSALIDENGSFLSNSYSVQITPSLHTLICTMEQSCDSNFGFALFVGNPTVGKVSLNGEDFTPCGLPSAAEEVKCLSKLFQATPLLGRAATKEVVLQLLNGASIIHIAAHGEPNRGEIMLAPNSSRVQPCLTVPTPESYLLTQRDILNMSVQARLVVLCCCHTGQGEITSEGVIGITRAFLAAGARCVLATLWPIDDNATKEFMEKFYDELCQETSASSEFRRKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JA04</accession>
    <name>A0A6S7JA04_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014542</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014519">
        <property type="protein sequence ID" value="CAB4026971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JA04"/>
    <dbReference type="OrthoDB" id="116216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="16239" checksum="25C4785B59073B01" modified="2020-12-02" version="1">MAVEPEQAEAPNVETNKLSLSLFRRPDKFKIGEDFDLFIKKCNLYFEAVELEDVKKRRFALLFNLSEDAFRLAEPVEFGEGENAYKDWIGKLKSLFERNQTATEKRYNFHRREQEPGESVDSYAVSLREAGARCGFETW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JA24</accession>
    <name>A0A6S7JA24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Threonine dehydratase biosynthetic, chloroplastic</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029578</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014532">
        <property type="protein sequence ID" value="CAB4026991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JA24"/>
    <dbReference type="OrthoDB" id="6123923at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24723" checksum="23F02C5BFE29AE3F" modified="2020-12-02" version="1">MKRKQNVYSSNILQKLAKIKIFASSARKNLINILPSFGSLPEQRMHGQKYKIGSLETTRYSLNRVLKRYGHKFDITKRECTAFTASIKAYDDATTEMKQEGKGFTKNHAAVSLEDLYDIYHSRHLDPDAGPRALQNKVQWDIRFYFARRGSENMYNMTKTTFTIKMDEKTGMQYVVKVEDEATKNHKQNEHDIVTGYMPAINDDKYCPVKSFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JD51</accession>
    <name>A0A6S7JD51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027901</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015172">
        <property type="protein sequence ID" value="CAB4027994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JD51"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8893" checksum="B239021104CF462B" modified="2020-12-02" version="1">MSEAWSRNNSTTQWWIALHSLEHIRIPGDARRYIPSQLFGTEALNLVTRIWSSFVTSFKTSVSWLSLYHIYFGNDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JG56</accession>
    <name>A0A6S7JG56_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015178">
        <property type="protein sequence ID" value="CAB4028000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JG56"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8888" checksum="059A084184B02C4F" modified="2020-12-02" version="1">MADSSNFVSSTKFHQNIPKIWNAKEICNHIAFSNLSYDSKRIKWIGTFDTLQKFVECDLKLDGKWSSPGGCSKIVYVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHG5</accession>
    <name>A0A6S7JHG5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016759">
        <property type="protein sequence ID" value="CAB4030288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHG5"/>
    <dbReference type="OrthoDB" id="5988480at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase core" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="17382" checksum="81654FEF0C84F079" modified="2020-12-02" version="1">MEDAGNSFLDNPTHVFTLHYVFLPRINQALHEYQRAFNEHGIRTANNWSPNQMWLNGMMNEENPLKHDGLDETPDDLQYYGYDPHAPSPFEDSDNNVVVSPIYETPDTKFMRAPQRVNPLRDSNDMGIDVYPEALTLVKELLNIDETQQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHK0</accession>
    <name>A0A6S7JHK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017938">
        <property type="protein sequence ID" value="CAB4031846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHK0"/>
    <dbReference type="OrthoDB" id="10055784at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="668" mass="75812" checksum="6A91BDAA81C0D090" modified="2020-12-02" version="1">MPLKPPKYDPRKGKARERHAINAAQRSEHSKALKCYVCNEDHKVIECPTLADSTVPERFNLVREARLCFSCLNKGHVTRDCRWKKKCEKNGCTRLHHQLLHEEPGTMSGISSVLDKGSILPVVRVCFRAPNGRTREGNVLIDSGAGTTVIRKDYARSLGLQGKREKIDLAVVGGERVEQPRSRKVTFSISALNGAEEHRIEDHEIEKTVLSVPRLDRPWLKSFAHLRDIDFSHKAGPIDLILGVQFSHLHAEDEVRQGRQFEPVGKRTKLGWFVIGSDSSQKTSKVCSLSFVQPVNLEKFYEFETLGIQAPQCHCPQIAMSPDDRRAIELIENSCKQQGGRYIIGLPWKKDKNLLPNNYSLAEKKLFSLERSLKRNDVKASLYNQVMNEYETNGWSRQLLQEEEEAKDKPSPDMASYIMIKIANENESQCPRAAVILKRDRYMDDLIHSKSTLEKAEKSKGEVYDVLATGSFKIREWFVSSSVQEMQAENVSSPEEENPDFKDNVIGENSECTTTKNVNLDGEEGIKTLGVTWNPQTDKFSFSVKEIKIETLTKRTLLSRISRLFDPLGLASVVTIKARVALQEIWKAKKYDWDDPLPEEILTLWYKLFRELESLNTITFPRCLRPDETCGPFELHVFADASATAYGAVAYLPGPPKKVPKLISSPRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJ81</accession>
    <name>A0A6S7JJ81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar-sorting SNF8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089713</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017462">
        <property type="protein sequence ID" value="CAB4031237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJ81"/>
    <dbReference type="OrthoDB" id="283883at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000814">
        <property type="term" value="C:ESCRT II complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043328">
        <property type="term" value="P:protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016689">
        <property type="entry name" value="ESCRT-2_cplx_Snf8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040608">
        <property type="entry name" value="Snf8/Vps36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12806">
        <property type="entry name" value="EAP30 SUBUNIT OF ELL COMPLEX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12806:SF0">
        <property type="entry name" value="VACUOLAR-SORTING PROTEIN SNF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04157">
        <property type="entry name" value="EAP30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="81" mass="9055" checksum="41A7C19278BAD20E" modified="2020-12-02" version="1" fragment="single">MRRGPGGIGAINKQRLAKAKYEQKGSAIADAQISQMSKQLESFKTYLEEFATKHKSDIKKNAEFRGHFQQMCARIGVDPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JP18</accession>
    <name>A0A6S7JP18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024518</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020047">
        <property type="protein sequence ID" value="CAB4034356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JP18"/>
    <dbReference type="OrthoDB" id="5984809at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="407" mass="45752" checksum="2CE2DD8E5AB55420" modified="2020-12-02" version="1" fragment="single">GLKYGYHVNGSKSWLIVKSQLLASEAERVFGSEVKITTEGRRHLGAVIGSTNYKEEYCNEKVNRWREEIEALSDIAKSQPHSAYVAFTKGFKSKFTYFMRTISSFEDYINPIEEAISELFFPALFGQEEPLPEELHEVITLSPPQGGLGIPALSEEAPQQYAASTSITRPHVEAILSQCTSMPEITNEIKNEQQSIKRANANAKRERIDESLPADLLLFVKQARDKGASSWLNAIPVEEQGLTLNKEEFKDSIRMRYGMPLPDLPSHCVCGSAFSVNHALSCKRGGFVARRHDGVRDLLTTLLSRVCNNVEAEPKIMPLDNEQFRLQSTNRSPDARLDIKAGEFWARGVTSFFDVRVSHVNSQCHQNKATSDIFKEQEAEKKRKYQQRILDVEMGTFTPLVFGTNGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0D0</accession>
    <name>A0A6S7K0D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Actin-binding LIM 2 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A028430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020731">
        <property type="protein sequence ID" value="CAB4035120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0D0"/>
    <dbReference type="OrthoDB" id="1746725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007010">
        <property type="term" value="P:cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030032">
        <property type="term" value="P:lamellipodium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.950.10">
        <property type="entry name" value="Villin headpiece domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051618">
        <property type="entry name" value="Actin-binding_LIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003128">
        <property type="entry name" value="Villin_headpiece"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036886">
        <property type="entry name" value="Villin_headpiece_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24213">
        <property type="entry name" value="ACTIN-BINDING LIM PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24213:SF9">
        <property type="entry name" value="UNCOORDINATED 115A, ISOFORM B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02209">
        <property type="entry name" value="VHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00153">
        <property type="entry name" value="VHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47050">
        <property type="entry name" value="VHP, Villin headpiece domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51089">
        <property type="entry name" value="HP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HP" evidence="2">
        <location>
            <begin position="69"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15531" checksum="3A00DD4892C8FA31" modified="2020-12-02" version="1" fragment="single">NGPSRPRPYSYHESSYNTSYEETSQTTTVASGGDQKFKTSVQLKIGKSTDDSSIGRTSGARTPPAKSPTGEFKIFQYRELKVDNYRSPRGVDKQNLEKHLNDEDFREIFKMTRNEFYELPKWKQIDHKKKAKLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6F0</accession>
    <name>A0A6S7K6F0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023043">
        <property type="protein sequence ID" value="CAB4037400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6F0"/>
    <dbReference type="OrthoDB" id="5966248at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16627" checksum="5C2EF656FEBE98F9" modified="2020-12-02" version="1" fragment="single">SVPQNIPPPLPTDYTKVDLPQLKSDMLKWYSVIPPSAKDWWESFLEGIEDNICHAQEDTECPIYSLKNNLQRPITETEETAEISQRLRTLREKELAPLEEIYTGPYQPPAVRGIRHDDNYLEALSPGVFVAVYISNYKKKPVIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8W3</accession>
    <name>A0A6S7K8W3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A032432</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025944">
        <property type="protein sequence ID" value="CAB4039841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8W3"/>
    <dbReference type="OrthoDB" id="10067267at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="208"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="178"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="178"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="30410" checksum="CC712A14B932BEC5" modified="2020-12-02" version="1">MRQLSQGATISIFLLQFCYISNGNSYVLKRDVPAISLIQERSWCPGLKDKKQFLQIDLGRAITITGVASRKDDAATEFKLSYKKNNDGPWYFYQENGGVKIFQTNEKSTGRFSRHWLRHKITTRHVKFHVTKWERLPCLHVEIYGWENREMRTDVLRRNSGRSPPIFQELLMDREGRKDDQKLVKDPEERNSHPHKPTPSTPDKESNMGLTITVCFLATGAIAILALIIICKWERHERRIRPEYLRANLRGQLKSSLRGTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIK7</accession>
    <name>A0A6S7KIK7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020041187">
        <property type="protein sequence ID" value="CAB4045696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIK7"/>
    <dbReference type="OrthoDB" id="10524607at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="85" mass="9847" checksum="CA62C42D3D71FBB5" modified="2020-12-02" version="1">MEQMHLENERRNQEREHELKMFSLLLGNQTTQNTQPIGSTSIMYAQPYATVQQQVFGNGCNSSETPGCSYINHNDDDEEKTYFKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KTN6</accession>
    <name>A0A6S7KTN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075714</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020047811">
        <property type="protein sequence ID" value="CAB4046224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KTN6"/>
    <dbReference type="OrthoDB" id="6382556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4046224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="97" mass="11001" checksum="A9620B08894938CA" modified="2020-12-02" version="1" fragment="single">GKVLQSEDKVLHSADKVPHSEDKILHHEGKVLLSEYKVLHAEDEVFYPEDNVPHPEDKVLHSEDKVPHTVDKVPPFEDKVLHSEDKVLHSEVKGSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KWH9</accession>
    <name>A0A6S7KWH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039779">
        <property type="protein sequence ID" value="CAB4045491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KWH9"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12366" checksum="8BDB3D1E11CAD3A3" modified="2020-12-02" version="1" fragment="single">YKCDDLTLTWFKSYLQERDQCVHFKGTLSSKKSSLYGVPQGNILGPLLFIMFIDDLPLYVNSNTDMYADELTIHTSARTVEELNNKLTEDMTNVQAWYTDNNMVIND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KXE3</accession>
    <name>A0A6S7KXE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017563</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018438">
        <property type="protein sequence ID" value="CAB4032483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KXE3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25059" checksum="779BC32809EE0C86" modified="2020-12-02" version="1" fragment="single">IITIEAEALPVEGNKEVGNVKEDENRKEPLSLLHVAEQEKVRKLISQYQKIREFRKKLVSKRMGMSNQSVSAMMSCWTSFDSFDEESSTVLQTISEVASICSNNTLPGMTATIAEERTVNLRTASVISPSVSVISPSSVSAIQPSSVSAIQPSVYDELFKKSSSISNFAKNLVFELFEAEELKDSNCSGVHQKKSLERDPHMDLIKESILIFVILENLCNYSLLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L4G6</accession>
    <name>A0A6S7L4G6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053018</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018957">
        <property type="protein sequence ID" value="CAB4033112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L4G6"/>
    <dbReference type="OrthoDB" id="10349966at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="23136" checksum="097C4F8425C9B358" modified="2020-12-02" version="1" fragment="single">MIYDNDRDHGDNELDHEGGNDDLMVLTIILQICFILSLKVFCDMTTDGGGFILVGRKNTSVTWTVPSNNKPVEPFGDPHWTSSLGNTPIIDFRVQVATQENFKATKAHWYYRLRKPRALKNLMIINKGGCGKTSPGIGDVQFVKDLMTDNIVTTKFRCSKFGMAHNAKTKFGWAKMNYCLNKPCRWGFAFHHKYPLQTDYSGAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LBD8</accession>
    <name>A0A6S7LBD8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017736</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020561">
        <property type="protein sequence ID" value="CAB4034952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LBD8"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="32292" checksum="9CDDB72C37FFAF77" modified="2020-12-02" version="1" fragment="single">MLVNTYVQYIKSDRFIQLGFTSSQPLLRPKHWFQFADDAAITSGEEYEAQILLNAFTAWCSWAKMTLRIDKCKTFGVSKLNSTNSQFLPKLYLNQCMIPTVKRNESFCYLGRYYNFAMDNSDHKRLLFEETEEILGKIDRLALHPKFKLQLYMKYLLPKISWHLTIADIDKTWVRQTLDMMCHNKFREWLEIPPCGTLDILLLAKSKFCLNIIDISAKFTQCQVILRSKLKNSSSPDIRQVYKASSTNTNVQYDRIISSRRKLFKKFGQKKLQTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LCY4</accession>
    <name>A0A6S7LCY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009762</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021928">
        <property type="protein sequence ID" value="CAB4036343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LCY4"/>
    <dbReference type="OrthoDB" id="5987366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="18268" checksum="AB77D27E8727474C" modified="2020-12-02" version="1">MCVGRRLLSNPITQEKKTNDNLVDDARRRERFLTRVLNHFWERWRKEYLTELREQHKVKNGSAGDSISQGDIVVVHEDKIPRQLWKVGRVDDLMRGRDGNVRAATIRTSSGGRVQQLQRPIQRLYPIEIPTKNLETVPQIKFVRDNLPNAIQNFNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LMA5</accession>
    <name>A0A6S7LMA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tribbles homolog 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045983</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. Tribbles subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024436">
        <property type="protein sequence ID" value="CAB4038652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LMA5"/>
    <dbReference type="OrthoDB" id="410920at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031434">
        <property type="term" value="F:mitogen-activated protein kinase kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032436">
        <property type="term" value="P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000153">
        <property type="entry name" value="Tribbles homolog 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024104">
        <property type="entry name" value="Tribbles/Ser_Thr_kinase_40"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22961">
        <property type="entry name" value="SER/THR PROTEIN KINASE-TRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22961:SF13">
        <property type="entry name" value="TRIBBLES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50007">
        <property type="entry name" value="PIPLC_X_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00038180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4038652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="354" mass="40296" checksum="F2D5B1261E27F067" modified="2020-12-02" version="1">MLYHRRSHPYNRNGTKRTSNQTNVVANLTDKQSSVKTKEPRPNVATIRPRAKTNTNPSSNGQNVHKIGEYFILDSNPGSTFSRAIDCQNRAELTCKIIESKKLGDVLAPYTRLESHENINEIVDVIVGETKAYLFMQNSHGDLHSYVKTKKRLREEEAVKLFRQIVKAVCRCHEAGIVLRDLKLRKFVFKDKDRTELKLECLEDACVLEGSDDTLEDKHGCPAYVSPELLHSSGGYSGKIADIWSLGVMLYTMLVGRYPFQDVEPTVMFSKIRRGLFVVPDSLSSKAKCLIKSMMRQEPSQRLTAEELLEHPWFKSTTQPINLYRCDRRSPDQTVPSVNVDESYFVPVKSRAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LPM6</accession>
    <name>A0A6S7LPM6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010494</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026132">
        <property type="protein sequence ID" value="CAB4039982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LPM6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="16037" checksum="6D2023667BC19ACA" modified="2020-12-02" version="1" fragment="single">MPSETENSKAKRLKELLNTYQLSQLIKKPTRTTESTKTLLDLIICKTDDPKTATTDVVELGISDHNLVYTCRKVGICKQKPKIIETRQYHKLNNAKFQNDLKQALLHINEHSDPNTALQEWNRIFLLIADINAPIRLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LPT4</accession>
    <name>A0A6S7LPT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063210</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026483">
        <property type="protein sequence ID" value="CAB4040223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LPT4"/>
    <dbReference type="OrthoDB" id="5958943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14570" checksum="0DD45EF6086F1E99" modified="2020-12-02" version="1" fragment="single">SLFFTTDLTNSRNLIRYNLVEGTIHNINDNPPGIGTHLAVDTVNRIVYWILFTAETSYKIYKTTYDGQTSQIGSDQTGSVTTVDIAEGNGYFYILDSMNSEVSKYNKTTDMIVSTISLSSGAKRIIVVVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQ69</accession>
    <name>A0A6S7LQ69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062978</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023252">
        <property type="protein sequence ID" value="CAB4037579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQ69"/>
    <dbReference type="OrthoDB" id="5985905at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="883"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="883" mass="101662" checksum="11E30A62350E07FA" modified="2020-12-02" version="1" fragment="single">IWDLESIGVTEDPKGQSADENYVVQQFKDNVKFDWQRYEVSLPWKENPNLPSTRGLAQRLANVEARLRKQPEQAQMYKDSINQYLNDGHARPIMAEDEKACRIHYLPHHPVFREEKSTTKCRAVFDAAAKGLEGVSLNDCLLPGPALQPDLVLLLIRFRCHRIGMMADVHSTENVQIQLLIAKTRVAPTKKVTLPRLELMAAYLLSKMTAFLLKVLGGTVNQYTCWSDSTITLSWIRRPSYIWKVFVANRVQAIQQNTDPECWRFCPGGTNPADLVTRGETLKNLADNPLWWNGPQWLCKPPEEWPKNLVDKELLECPERNQKVVCNVAVSTFPSSCIDAERSGRWTKLVQKTALEIQKTSFVEEWCRLQKKDGLPSKSPLRKLNPYFDENDKLIPVGGRLQFSELSEKTKHQIILPAKHPVVDKIIIHSHEVQASHAGPETTLAILRETFWILRGRRAVKRAINSCRICRKFQIGPVQQQMAPLPAEQVTHSPTFTHVEIDFTGHLILKAQKKSDKSFQKVYVCIFSCATTRMVHLELTNDMTTEEFLQALRRMYSRRGLCNTLWSDNQTTFKKADKDIMRLFEASSQKMNKVWKKLDPSHLQREMFSKGIKWKFITERSPHRGGWWERICRSLKDPLRKILGKALLTYTEMYTVLTDIEAVINSRPLTFIGDDINDGQAITPAHLALGRSLKAIPDATVGSSTIAPVSSRFLYRQNLVNRFWRRWLTEYLPQLTIRQKWLEEKPPLKVGDIMLMSEDNVKRGNWPLAIVKEIHKGKDGLIRTVTLRTKLGQERRSVQKLYLLEEAHSVEEDLRNKEKLEQSQSLEIAPEICEKIQKQVVEEQKTENEQDLDAECQGGENVKYTRFGRLIKVNQPQTPCQPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQT4</accession>
    <name>A0A6S7LQT4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027904">
        <property type="protein sequence ID" value="CAB4041182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQT4"/>
    <dbReference type="OrthoDB" id="10615049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="27137" checksum="7D00C19BC6C623C5" modified="2020-12-02" version="1">MDNKQMNQLLRLVLLVVATTFAPIWIPVAVITVVPTFLILAEIISTIALGITTVLTIILGTFGIPLLFSTTVTAGMYMTYKAFVKIAVKAQCFLFNLKQFLNFLVKFNLKQFLNVAFESFNFMAARNYNELPLSARKLESKGLPIVNRFVANGKREQLVYEEESETESETVVSRAGRPRATHVPFSKTNSIPLFDLSDVDDGDEIEIIFNSVEELHSVIYALCKSARNCAVLCNVSRRNTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LT93</accession>
    <name>A0A6S7LT93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031768">
        <property type="protein sequence ID" value="CAB4043203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LT93"/>
    <dbReference type="OrthoDB" id="5984937at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029309">
        <property type="entry name" value="CaRF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47456">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15299">
        <property type="entry name" value="ALS2CR8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17564" checksum="2640DB500AE9E9B8" modified="2020-12-02" version="1" fragment="single">MASQKIGKRVQWRLTSSEGISFPFDGVPFLCVGTVNYQCHQGDDIDLKTKMKRQEDRDKNENHDHTFRKRRKHYQPSKKLGQCPSQIIMSRVLKFPDYKVVVGPNGGKPQRKMREAAASLKADLQAGTKLAIIDQFAIKLPNINSHKFHTTEGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUP4</accession>
    <name>A0A6S7LUP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025779</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035082">
        <property type="protein sequence ID" value="CAB4044479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUP4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="23071" checksum="61D206CA3EA14F9E" modified="2020-12-02" version="1">MDNNGWSLISRFSNHDSKNWIQNGEFWLDKSSSYGNPKSPSDNRDMISEAFWKVKGNEFKITRSDDSSHTALLQTTSNCLQGRTFRSKITSYGNFRNRAVWASDQCRGRCSVSYGGRYKTTAGFEKHSCSSNIQSSNYIGFWCDWSAGDGAVMMIGGGGSGCNRADHGIGITEENAAKFGNGGGTPYYDFGYEAGNTPTSAYSLNLWVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DD85</accession>
    <name>A0A7D9DD85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000460">
        <property type="protein sequence ID" value="CAB3982069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DD85"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15242" checksum="58E8BC6E2086BD25" modified="2020-12-02" version="1">MKHSTRYQQQVYDDTTQQQKTKKARDVLNNKLAPDIFGEADIIVSEDRESVLAVSDGDEFELRPAIGDICVLLDGASTADDVAFFIANVARLASGKVWKERIESLFYPIDIAYNYSERAYELRTGAKDICNAVKGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DP84</accession>
    <name>A0A7D9DP84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075369</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001258">
        <property type="protein sequence ID" value="CAB3987968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DP84"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="219" mass="24728" checksum="3B07A2B6DBD5C952" modified="2020-12-02" version="1" fragment="single">MDRGLYNLAVFLDLKKAFDKVNHDILLAKLELYGIKNTPLMLLKSYLSDRSQKCQVNGELSTLKYLKYGVPQGSILGPLLFLIYINDLPNCLQHSTARMFADDTNITVSGKSIKEAEVAVNVDLNNIREWLLSNRLSLNLVKTEYLLIGSRHNINTLEEQPRVFIGDEPIKGVQVTKTLGVKIDQFLTWDSHIEQISKKISSGISAMKKIKDFTNSDTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DWB5</accession>
    <name>A0A7D9DWB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002706">
        <property type="protein sequence ID" value="CAB3995655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DWB5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00821">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="224"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="151"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="35844" checksum="A7AC3152DB6C80C4" modified="2020-12-02" version="1">MEHIKEVIEIEESEELSWKDYAIKQGYLVKFNRGLLKAPKMQYFVLTDIGLISFESKPKHDTKPLCFLPYEQLSSIKLDHIELNSCKLCCMQLTSKTSPNFTLAFKCKEDRDDWMMIMMKAFSETLLTTSVFDKSSETIDEDNASESDVSTTKEKPERNASTPMKEKLEQKLSTGSSGPSLRRKRRKGDKGSIRRSKSYDSLALHDVTNTSFTFPMKLLTAEPAKPEAENAFQPQQSRKRKSEPDIHVIAHSPSERTVDSKEKLFANSCSFEHRDSLTVQAEKQLKSKNDAKHKTNMFAKLLSMFENPALLSAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E0B5</accession>
    <name>A0A7D9E0B5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Visual system homeobox 2</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Ceh-10 homeodomain-containing homolog</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Homeobox protein CHX10</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A043208</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 14 15">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the paired homeobox family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003139">
        <property type="protein sequence ID" value="CAB3997597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E0B5"/>
    <dbReference type="OrthoDB" id="6159439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990837">
        <property type="term" value="F:sequence-specific double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007601">
        <property type="term" value="P:visual perception"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000065">
        <property type="entry name" value="Visual system homeobox 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023339">
        <property type="entry name" value="CVC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017970">
        <property type="entry name" value="Homeobox_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003654">
        <property type="entry name" value="OAR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052294">
        <property type="entry name" value="VSX_homeobox_regulators"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46892">
        <property type="entry name" value="VISUAL SYSTEM HOMEOBOX 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46892:SF3">
        <property type="entry name" value="VISUAL SYSTEM HOMEOBOX 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51496">
        <property type="entry name" value="CVC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00027">
        <property type="entry name" value="HOMEOBOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50803">
        <property type="entry name" value="OAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="7 14 15" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8 14 15" id="KW-0371">Homeobox</keyword>
    <keyword evidence="10 14 15" id="KW-0539">Nucleus</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0716">Sensory transduction</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="11" id="KW-0844">Vision</keyword>
    <feature type="DNA-binding region" description="Homeobox" evidence="14">
        <location>
            <begin position="109"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="243"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="16">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="16">
        <location>
            <begin position="16"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00014891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00031274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB3997597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="266" mass="30465" checksum="4DC0B89E181CB410" modified="2020-12-02" version="1">MARVENNEKNSAECRPSQTKTTSSHSFSIQDILGLDKTREKPDLYSSENSYFSSSTDTVIKIEPGSPTTTHLDWSSTHFASFMQLDRMNPTYFSEKLPPPTSSTKKQKKRRHRTIFTSQQLEELENAFKESHYPDVYAREALSNKTSLSEDRIQVWFQNRRAKWRKKEKVWGNTSIMAEYGLYGAMVRHSLPLPPHLADATSARWLLGMYKKAGHAEKSGKDENNDDEARNLSIANLRLKAEVHSKNLESEKTSEDSKMQNDDVPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E7J5</accession>
    <name>A0A7D9E7J5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037309</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004413">
        <property type="protein sequence ID" value="CAB4002664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E7J5"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="87"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="22181" checksum="187DBC1D1F5917D1" modified="2020-12-02" version="1" fragment="single">DTATSPYSSKFKEVDEMSVLEELSKLRTNEAIGLGGFSAKLLRDSANLVAPYLTKLFNLSLRCGSFPDIWKKGRFTPIFKSGDPTSSNNNRPITILPTLSKSLEQTVHHQVYNYMQERKLLASQQFGFRSKLSTTIALAHFTKQILDILDHRKITCAVSIDLRKAFDIVDHTILLEKLKTIGFTSTGSVLDRFCSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAS6</accession>
    <name>A0A7D9EAS6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075887</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005144">
        <property type="protein sequence ID" value="CAB4005259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAS6"/>
    <dbReference type="OrthoDB" id="5982517at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19403" checksum="559D38661B9B7EF6" modified="2020-12-02" version="1" fragment="single">MADGNAPVERRQREASSSRGPVGDTVSPLAEFMEEMREFKASMASEMASVRGEINNFTSTFNDSTFDDELRLDIDEGQGSDSETVSTCLDTKVERLLKETSKTTSSEDLTTNSDSLLTTIAQELDVSEQMGAAVQERLASIVEGLLSTKLSDEKWREKVGKYPRPQNLENLRTPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H9C2</accession>
    <name>A0A7D9H9C2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P2X purinoreceptor 7 intracellular domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A023076</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000078">
        <property type="protein sequence ID" value="CAB3977883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H9C2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="49"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="15149" checksum="3864A893EEF2E7F4" modified="2020-12-02" version="1">MASKESFATNEDKDESFGSKEQVIEPYMFEPNKGVHGEASDDLSEDSGSEEDEFDEEFELANAWRRTTLEWCKCGKCAIMEKTIESFCCHEKALEYDEYDDKLTSAQNQETCLMSMFHNIWKKIGLLEMIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HII7</accession>
    <name>A0A7D9HII7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A057750</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000619">
        <property type="protein sequence ID" value="CAB3983479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HII7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="166"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3983479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20460" checksum="F679447D4E260605" modified="2020-12-02" version="1">MKTRELERKEPVEMFKGRSMFLFTIVHVIFTILLFVAMTHIQMQMSSHIAQQERENKELREILTNYEYMHTQNGDREKQNSDFEIQQYKTRQSQYKTSKSKEMNENEEDTDEENNDDGVPMTLRNKRNAKPSCCGRGQKGGKGQKGSRGRRGRRGQKGDPGIFGAKGDKGDRGGSIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HT99</accession>
    <name>A0A7D9HT99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035007</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002191">
        <property type="protein sequence ID" value="CAB3993129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HT99"/>
    <dbReference type="OrthoDB" id="5969539at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="84"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="173"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="26061" checksum="1366DA0272A08E33" modified="2020-12-02" version="1">MPDRPWEKVKVDFYGPLPSGHYVLVVIDCYSRFPEVETLKSISAKKANPTLYNQSSPSTTFVQSQYSREIANNYTNPLVNRHSEAQANQGQQRDKAKQYADKRRHARPSNIKVGDQVLVKQQKRNKLSTNFSPQPYTVTAIKGSKVVAENKDHRITRNSSFFRKLNKEKWMAEEEDDEMPVARTRGSEVENAGEIQQEEQHDGLRRSTRNCMPVEHYGLPVHSSIIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWH5</accession>
    <name>A0A7D9HWH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056218</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001675">
        <property type="protein sequence ID" value="CAB3990521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWH5"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="208" mass="23440" checksum="DFFDB6C552373951" modified="2020-12-02" version="1" fragment="single">MDICKAFDSVDHSILLQKLHDFGFSGSLLLWFQNYLSGRFQRVTVHGATSTSLPITSGVPQGSLLGPFLFSVYINDLPNNISTSTRVGLFADDTKLYRCGQNPCDALVLQDDIQGLLCWSIENRLRFNQSKCKVLSITRKKSPLIYPYKLDNDQLLVSNAQFDLGITISPKLLWNDRVNKVRSKANQMLGLIRRSTAEMTVINARRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I4Q7</accession>
    <name>A0A7D9I4Q7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060581</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002874">
        <property type="protein sequence ID" value="CAB3996463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I4Q7"/>
    <dbReference type="OrthoDB" id="8938395at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="24283" checksum="534FF42CFB98257B" modified="2020-12-02" version="1">MNQARQNFYRQFISENSQDQRKLFRATKGLFRHDSDLAFPHYNDSNALSNDLGQFFAQKIINICSELDTASTYEQAVFSDMPSVSLNSDQIYQEFSPMSDEDTERLITSSNKKSCSLDPIPTKLVVECLDVLLPVITKMINLSLESGIFPCVWKEADVQPRLKKQGLEVIFENLRPISNLPYVSKLVERTVYNQSHNHLSVHHLYPGNQSAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6M4</accession>
    <name>A0A7D9I6M4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transport Sec31A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A060988</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the WD repeat SEC31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003448">
        <property type="protein sequence ID" value="CAB3998822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6M4"/>
    <dbReference type="OrthoDB" id="542917at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030127">
        <property type="term" value="C:COPII vesicle coat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070971">
        <property type="term" value="C:endoplasmic reticulum exit site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090110">
        <property type="term" value="P:COPII-coated vesicle cargo loading"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007029">
        <property type="term" value="P:endoplasmic reticulum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040251">
        <property type="entry name" value="SEC31-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13923">
        <property type="entry name" value="SEC31-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13923:SF11">
        <property type="entry name" value="SECRETORY 31, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="7" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="8" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <keyword evidence="4" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3998822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="25996" checksum="5BA0EBA45B6CA4F5" modified="2020-12-02" version="1">MKVKEIARTANIAWSPASHHPIYLAAGTAAQQLDATFSTSAALEIFALDLTSDDREMPVKGMLSSEHRFHKLVWGTYGMETEETPSGILVGGTDSGSVVLWNPVKILNGETDDAVLIQNDKHTGAVQALDLNPFQPNLLASGASDSEIYVWDLNSPDNPLTPGAKSLPPDNISCLSWNRQVQHILASTSPCGRCVVWDLRKNEPIIKVSDQGSMFGPVARTVASQRPRARHVYVVNRVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9I2</accession>
    <name>A0A7D9I9I2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Replication factor C subunit 3</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Activator 1 38 kDa subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Activator 1 subunit 3</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Replication factor C 38 kDa subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A076279</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Subunit of the replication factor C (RFC) complex which acts during elongation of primed DNA templates by DNA polymerases delta and epsilon, and is necessary for ATP-dependent loading of proliferating cell nuclear antigen (PCNA) onto primed DNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Subunit of the RFC complex, an heteropentameric complex consisting of a large subunit RFC1 and four small subunits RFC2, RFC3, RFC4 and RFC5; the RFC complex interacts with PCNA. Forms an heterotetrameric complex with RFC2, RFC4 and RFC5; this complex has ATPase activity but is not stimulated by PCNA. The heterotetramer of subunits RFC2, RFC3, RFC4 and RFC5 interacts with RAD17. Interacts with CNTD1; this interaction facilitates crossover formation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the activator 1 small subunits family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003809">
        <property type="protein sequence ID" value="CAB4000324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9I2"/>
    <dbReference type="OrthoDB" id="761538at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005663">
        <property type="term" value="C:DNA replication factor C complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003689">
        <property type="term" value="F:DNA clamp loader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006271">
        <property type="term" value="P:DNA strand elongation involved in DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000030">
        <property type="entry name" value="replication factor C subunit 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.272.10:FF:000002">
        <property type="entry name" value="Replication factor C subunit 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000136">
        <property type="entry name" value="Replication factor C subunit 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.272.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050238">
        <property type="entry name" value="DNA_Rep/Repair_Clamp_Loader"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669">
        <property type="entry name" value="REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669:SF1">
        <property type="entry name" value="REPLICATION FACTOR C SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13177">
        <property type="entry name" value="DNA_pol3_delta2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21960">
        <property type="entry name" value="RCF1-5-like_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22534">
        <property type="entry name" value="RFC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="post-AAA+ oligomerization domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="11">
        <location>
            <begin position="34"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00058626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00062267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00070184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00076818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00079394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00080379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4000324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="355" mass="40572" checksum="324D915F05A670AC" modified="2020-12-02" version="1">MSLWVDKYRPNSLAKLDFHKNLAAHLKKLAHSKDFPHLMFYGPSGSGKKTRIMCVLRELYGPGTEKLKIQQQTFTTPSNKKVEISTIASNYHIEVNPSDAGIYDRVVIQDLIKTVAQSHQLDSGSQKEFKVVLLTEVDRLTKDAQHALRRTMEKYTATCRLILYCNSTSKVIPAIRSRCLGIRVPAPSHTEIGQILHYVCRKEGLTLPDELAQRIAEKSGRNLRKALLICEACRVQQYPFSEDQQIQEADWEVYLKETAQLIVEGQSPKRLLEVRGRLYELLTHCIPADIIMKGLVQQLVTNCDGSLKAEVARMAAFYEHRLQRGNKVIYHLEAFVAKFMSVYKRFLEEGMADFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAC7</accession>
    <name>A0A7D9IAC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086599</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004821">
        <property type="protein sequence ID" value="CAB4004158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAC7"/>
    <dbReference type="OrthoDB" id="5960351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18299" checksum="FADA215B739C9047" modified="2020-12-02" version="1" fragment="single">FVATISDPMHNHQWAYKKGHSTELLLVKMTENWRRALDNNLVVGIVFVDFRKVFDSISHPVLLRKLQELGISGDLWCWVKNYLSNRHQVTVINGCMSESMPAVKFGVPQGSVLGPILFSLLCNDLPDINISDDGDIYMYADDTTLYAFAPTQDLVAEILNKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IAL6</accession>
    <name>A0A7D9IAL6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037593</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004032">
        <property type="protein sequence ID" value="CAB4001222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IAL6"/>
    <dbReference type="OrthoDB" id="5987417at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="24104" checksum="ED70A96EA087E305" modified="2020-12-02" version="1">MYVLAWDERRDEGVYRSCETCRRYETRQQKETLMSHEITERPWEKVGADIFTIGDNNYLVLVDYYSNFWEINRLEDTKTSACIRKIKGHFARNGIPDIFVSDSGSQFVSERFGNFAKLWGFEHRVSSPGHQQVNGKAESAVKSAKKLIRKVVETGNDPYLAILAHRNTPTEEMESSSAQRLLGRRCKTLLPTTTELLRPESIPNTVQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBJ4</accession>
    <name>A0A7D9IBJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032739</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004278">
        <property type="protein sequence ID" value="CAB4002172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBJ4"/>
    <dbReference type="OrthoDB" id="5997366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="19765" checksum="89ED123F83A574E8" modified="2020-12-02" version="1" fragment="single">MTVNKHGIYISGLNPASARTLTCQSWLVFLSNFLVCLFFNLNQSEIKREDLLLKRASDSHAWTKPRNISQRIYSSSQRDFKVQRSYGPIYLLFPRFKIKSIQLNIAGEDSVGYSSDWLDQWIGQMKDKCHKMYLTGDSMFLDAIADPKHDPKSESGISIYNYERYCEDTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHR6</accession>
    <name>A0A7D9IHR6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025716</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005412">
        <property type="protein sequence ID" value="CAB4006108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHR6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28517" checksum="58C555B93CEB3EFE" modified="2020-12-02" version="1">MKDAVSNILEQFNNRFGKYPKFAQFDQGTEFYNKEVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDLTDNYNSSVNRSIKTTPDSVNESNWTEVWKTLFSHNLGKPSEPKFAVGESVRISKYKSVFTKGYEANFTEELFAVTEVYHGHPNTYTIKDSADEPIIGRFYEQELYSAEGREPDFKIKKVLRRRTVKGKKMALVKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IK42</accession>
    <name>A0A7D9IK42_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">B-cell lymphoma 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A087320</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005816">
        <property type="protein sequence ID" value="CAB4007512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IK42"/>
    <dbReference type="OrthoDB" id="10254947at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051059">
        <property type="term" value="F:NF-kappaB binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071356">
        <property type="term" value="P:cellular response to tumor necrosis factor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051070">
        <property type="entry name" value="NF-kappa-B_inhibitor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46680">
        <property type="entry name" value="NF-KAPPA-B INHIBITOR ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46680:SF3">
        <property type="entry name" value="NF-KAPPA-B INHIBITOR CACTUS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="368"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="372"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4007512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="407" mass="45689" checksum="29BA17EA8FE46E3D" modified="2020-12-02" version="1">MYLKIFVALTLIYQTMEKDESSQGSTRHLRQDEVEHKMNSHDANTHNNSTSETECSRTHNITCKLKNVSMQEHRKRNLPELYNDSSSKIVRKEQRDVHLEREKKWKRPDCTGRHYSEAGNRKQNLLTQLLKKDKDGDTILHLSIVHHDVRRSKTVIEIMSGESLDVVNKLQQTPLHLSILTCQPILVEFLIFHGASVNTRDRNGQTALHLASKNADSECVKAIKHATESPRYSSHIVDEKPDLNLKNFEGKAAFHLAALSGSQDIVKTLLDMKADINIQDGTCGRTALHLTVESHNINMITFLLKNGANVNATTFSGNTALHLASGLGMDQLVHLLIRNGANINITNIEGDAPLYAKIVTNAQWRPPRKSQMKTMQQTTNPACSSRTTNKNAKLVSQSATLTSRVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPW1</accession>
    <name>A0A7D9IPW1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080882</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006823">
        <property type="protein sequence ID" value="CAB4010543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPW1"/>
    <dbReference type="OrthoDB" id="6134459at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1107" mass="130974" checksum="645A7E1E59F05D67" modified="2020-12-02" version="1">MYQSRMYRYNEYRVTDDGLQVCNSSDPRIKQRWRGLIAREKEVLASKHCNASVDGFFYSSYTLYKNFTVLFEITNQCFTRQNYGVILGYFAICSAKHNLSCNDYLVKVKYGDQYNIFKNLSLFYNKMYDYHEYRLGNEGLEMCSSNDLRIWLIWISRNLWEQIKYIFIKCLESIYTLSPGYYAVNKQFTIYLGNPQYLTRNEYRVLSGEPYTCGENYRSTMSEYTKEDLLMCNDSIINITYDDEYKVRTDFSILYKNKVYDYTEYRVLNDSIKICNSTDNYVRSIWKVRNKWVKATMHKKICNDPTGESWLHREYYTVNKQFTAYSGSNGQYFTRNDYWVYYDGKLVICKENYRPKSIEYTKEDLLMCNDSIINITYDDKYKVRTDFSILYKNKVYDYTEYRVLNDGIKICNSTDNYLRNIWKVRNKWVKAVMQYRSCNELAAYFVFTRQEYTLLKDFRVRLLATKQLITKYDYGVLRGKLITCLTECANFIFTIKYEDKYRVWNNFSIMYRGRMHNYDDYRITDDGLQVCNSSDRLIKEKWRNFVVSEKITTAFKHCINASVDGFYPENYTLHTNFTVLFKPTNQIFTRQNYGVIMGYFAICSRKLRLSCNNDLVKVKYGEQYNVFKNFSLVLYHNKMYDYREYRLSHDSLEMCASNDSRVQAIWRTRNSWQKSLPASCYHSYKLNERYYTVTKQFAVYSAENGQYFKINDYAVIDGKPHVCGKENLRPIYLITNFKIIIAPLCALALSIISLLLLLIVYCMLAELRTLPGLNLMSISFALLLWQTYLVVFLSLYSHVGKLFEIPCARLFVANKFMTYNVIMNATVNIYHLRKTFCGNTLVKSDELKKWNRFLKYSFFSWGVPAIITIVYIVLVKKDVLRFDKPIAYVKNDVQSSLPSFYRRIVFTSGNGTANNIEIYHRIAQSRFNQSTVLGKEDATLKFYERIVFAHGDVREDDGRIYQQISGDCINGRITPDWSAAVDVYGLQGCLLLYIIGMFIFTAYRIRQKLKASRDTEQKSNIVKRRKFVILLKLSTTTALSYWFPLLISRIVDFDFDIKIALYTVTLLTGAYIGIAFVFTRRNYPLLKKKFFPANNKPPVTEISLNRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J0P4</accession>
    <name>A0A7D9J0P4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC100891925</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002909</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009805">
        <property type="protein sequence ID" value="CAB4017997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J0P4"/>
    <dbReference type="OrthoDB" id="10055784at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="656" mass="76068" checksum="C00FAC3EB0D8EE8E" modified="2020-12-02" version="1">MELHLFADASQRAMAAVAYLKCQRKNEVKVSLLMNKTQVAPLKKMSVPRLELQACLMAVRLAEFIVKQMEFKTVKVVFWSDSTVALSWIKMESRVLKEFVANRVATIQEKTEGCQWHHVSGQDNPADLASRGVDLRELLKPDNIWFSGPGFLRSDEYTESSLKPDEKLIEAEKKKVTRHCHVQSFVGEEFLKVEDFSTFHKLRKRVAFLRRPFRNWRLKKSKRLTKPTTRSAMKKKDIQHPIEPLSADELREAEIWLLRRDQSICFAKEITVLEKQQTGLGKTKTRKMLVPKSSPLYSLSPFMDDEGLVRLGGRLERSPLSYDCRHPIILGKGSHLAALLIRRSHEEVKHFGVNTVLCNLRQRYWPIRGREQVKKILSSCVLCKKWRGNPGVQFMADLPASRVDFPNPPFTLTGVDYFGPITTKAGFREGRREKRYGVVFTCLQTRAVHLEVAQSLSTDDFLKVFSRFVARRSKPKRMFSDQGTNFVGAEREMRQLVKELCNDVVLKTKLQQEGLDWNFNPPFAPHMGGAWEAMVKLAKRQLMPLLPSEIQVDEVSPKRRWLFLQSIMSKIWKRWQKEYLPCLQRRPKWNQTVRNLEPGDLVLILDPNQPRGRWLRGKIEETFPDDRNVVRSAKVLTQNGVLHRPVTKLILLLREH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J383</accession>
    <name>A0A7D9J383_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011199">
        <property type="protein sequence ID" value="CAB4020947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J383"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="53" mass="6050" checksum="A9DAB4978DAC7237" modified="2020-12-02" version="1" fragment="single">RLLSIAFFASKSKEHQTSRQQAKPITPTVGLHQEQWGTRVFDFACSFSISFSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8Z2</accession>
    <name>A0A7D9J8Z2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045066</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the group II decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013207">
        <property type="protein sequence ID" value="CAB4024733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8Z2"/>
    <dbReference type="OrthoDB" id="10041588at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051151">
        <property type="entry name" value="Group_II_Decarboxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46101">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46101:SF18">
        <property type="entry name" value="HISTIDINE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16733" checksum="345D054143A40A8B" modified="2020-12-02" version="1" fragment="single">MIRKPDQVKPHDNPLFLGGHDSTMSGSRCGHGVLVMWELFSNKSYRDFAEIAAREDQLVMFLRSSLQELEKELRVDLWLSHTPGSLFVCFKQPRKDIVRRYSLASMLLNVKSADGTVERRIYSHICVMAHITKKLILRFIEELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JB83</accession>
    <name>A0A7D9JB83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013825">
        <property type="protein sequence ID" value="CAB4025784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JB83"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="203"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="344" mass="38687" checksum="39797D63DCB2AA64" modified="2020-12-02" version="1" fragment="single">MVKAEAMYGDDPIVLTDLKSELDYVKNLMERRVTEETTFTEGNDGTVNISGPSGSTTTPGVDFVEDPNNVLPDVLDAFNESFDADWDEIEARLEKLNKISTANKKRDFENQVERVQAVTRVIKGKEGLILDPRNRYVRELIKRSSVRTLKDGTEVLVFRSEQGIDKSGTQIMKRGKTKNLVYSKDSPALREYKDLLKKIKEVPTDPDNIIGSDEETREMPQFDESSEEYADRENIELIDIGAKMGDLPGLTMQENNELRGVLNPPDGSSIEGRTGPNGALQIQADYFNEAIGETVERATSAEGTTEYNSLIERIDSLKEARDRTLEQRTVEEAREAQLKDISRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPY5</accession>
    <name>A0A7D9JPY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019558">
        <property type="protein sequence ID" value="CAB4033793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPY5"/>
    <dbReference type="OrthoDB" id="6625098at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="245" mass="27752" checksum="C425885E4F51927A" modified="2020-12-02" version="1" fragment="single">MSRLSRVPKHQGFQMKYPMCKKRSRVDDASRDTSSILVFQTSLPSLDDKKLDVIIKDINEVKQNLALLVKAKNDDLCEARSVAENREKLSEETKTLLAKITLARSINDIELTGFAYSSERSELCCSVCTEAEHENNATLTTVHGSSLSGMFSYEQSNGLAFAENENLPDQFRNLKKHVKRHIKKSKKHICNLRNETEKQNAAVKMRGNNHEAGMNLGRLCMKLYLKGRPYTDFEDILNLKQAGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JVV1</accession>
    <name>A0A7D9JVV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025242</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022237">
        <property type="protein sequence ID" value="CAB4036626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JVV1"/>
    <dbReference type="OrthoDB" id="5958943at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="27982" checksum="DE6E90633BCC9DF7" modified="2020-12-02" version="1">MTMCNIPVVVYYGPSAINYQVTINNVTTSGSLGSGGAKDMDYDRLSRRLFYYVSGNFYSVEQDGSDLRDIGAVGNVDRFTVDGRNNIIYYINDLTDIISKFNMTNSAETDLGIRAKDIDMDSVNNYLVIVRTDSGSNIERYNVETEVVEAIKAGGDFPQDVSVDADNGVVYWVNVIGGSTFKVKRTSYAGITTDLNITYADRIEIAQDELYLYVLVVSNETIYKYRKNTWEQMGSIVVPSGTSGIEVAFGEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K044</accession>
    <name>A0A7D9K044_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023770">
        <property type="protein sequence ID" value="CAB4038075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K044"/>
    <dbReference type="OrthoDB" id="9987685at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12171" checksum="2596E9FAA8AA714C" modified="2020-12-02" version="1" fragment="single">MKCVELAETSPPTAVKDAFRRFKEIPAQSAFEEFAKRLENQRRGYSSETPRKNVGDRVATLGSDGMKVSLAIDKNAEKKAVRDLFVEHEGKKKLCVDVPTTCIYDVDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K069</accession>
    <name>A0A7D9K069_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nephrocystin 3-like N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A039012</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025389">
        <property type="protein sequence ID" value="CAB4039443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K069"/>
    <dbReference type="OrthoDB" id="5967843at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039:SF16">
        <property type="entry name" value="GPI INOSITOL-DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="2">
        <location>
            <begin position="36"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="26050" checksum="84043781C664A914" modified="2020-12-02" version="1" fragment="single">VSTWLNDTSFDNRVFIISGQAGMEYKKNLTSKLSGQEGKMLDDMNIKGLFSVLLEEPFANIPDPGRHILIVIDALDESQQKERYEFVNLITNHFHKFPRFIRFLITSRSEKDIALKFQGLNPMFLKPDDERNLNDLRLFFKDKLKTTVDHASREELVKTLVDKSEGLMLYASFVCKLPDDNFIKSNIENLPRGIEKIYESYFDRLEKELKILGIERKLFYHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K4I4</accession>
    <name>A0A7D9K4I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026657">
        <property type="protein sequence ID" value="CAB4040340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K4I4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12034" checksum="0FE328997210A356" modified="2020-12-02" version="1">MKSEGRVSEDENVEGLFRRPCKRQSGRPGCTGFVKEASRVPAKREYKSPIFREEMESEGRVSEDENLEGLFRRPCKRQSGRPGCNGFVKEPSHLPKKRGYKSPIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KZX4</accession>
    <name>A0A7D9KZX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062288</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012758">
        <property type="protein sequence ID" value="CAB4023945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KZX4"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="20296" checksum="21AEF6892CF97118" modified="2020-12-02" version="1" fragment="single">QVVKDPTRNSNILDLIFANMSSHYNPPEVIAPLSTSDHNMVIWMAKSQQRSVNIVKKIKFRPPPRYNLQQFGSCLAQYDWSTVLNLENVDEKVEDFTRATNDMINYYFPERTVRMHSDDKFFITTKIKKLLRKRDNAYKQGRMQTFRKLRNRVASEITKAKRHYYVMNIGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L6Y6</accession>
    <name>A0A7D9L6Y6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">QRICH1-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048954</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013352">
        <property type="protein sequence ID" value="CAB4025003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L6Y6"/>
    <dbReference type="OrthoDB" id="5988392at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042838">
        <property type="entry name" value="KIAA1958"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963">
        <property type="entry name" value="SIMILAR TO RIKEN CDNA E130308A19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="QRICH1-like" evidence="1">
        <location>
            <begin position="93"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="34469" checksum="D76604B564F50E1F" modified="2020-12-02" version="1">MLEKILDVKYTYIKKKIIKVSDEEHSESEFYYPEVQNEEYETNFYQFHDDNVNEYVQRNSQEEIDIFISEQKSVNTVKKPTTDTNAFDRYVAEINKQYFNILYLPAQELDYLLSKFFKDIRKLNGEEYEPGTISSFQRSIQRFLSDNKSQFNILRDKEFEMSRQVLAAKRKSLVTKAGKGNKPNATCSLTQEEEANCLNVDSLVCLDQKSSREPCGGFWHSTLASGQETKAVSYVGAIFNSKETLMVTKCSSGCVSEAQKHGMVKKTVTKDPFSQRFMPLDQKDALSSTIKPSKAIVQSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8V9</accession>
    <name>A0A7D9L8V9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050936</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016102">
        <property type="protein sequence ID" value="CAB4029334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8V9"/>
    <dbReference type="OrthoDB" id="5986101at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="530" mass="59707" checksum="F42A7FF82A2BC450" modified="2020-12-02" version="1">MSEDELYSYKSRRPVSLSTASSYQQLPASKVSCQSFPSKLHMASQPSEISHNATERRSVMRGVQTLPQRTNQSSDSKHSKPQQVQSPSNARPFEYEYHTFVNPTSASNVNNGIGVAKNPPDKEPSPNTANVIESVLESMMLLQQRQAETLISTHQQLTASMTLPQPSINVFKGDPLEYRTFVMFFDTRIQYRVNNNADLLYYLNQHLSGEPKGMIEGCLHMDPEIGYTEARRLLKKEYGDPYQISMAYIQRILNWPLIKSDEGKALKSFSLFLIKCKTAMKSISHLCVLDRAPNMQAVVSKLPFHLQAKWRDLVAKIRRDNAKIANFENLASFVQSAADAPNDPVFGKEALNKSKESSKKFDKRDSIQLKNKNSSFATNPTLIHGAGSAKPIIVCPLCNSSHDLDDCQLFLKKTVEQRKEYLKQNKMCFACYEKNLISRGCLRKRKCKKCNKPHPSALDVDDFKLENQVRKSEEEVKNACTKMPSNSPNDVVVVHAIIHVKVKPKGSTGTVTTYAFYDNGSGGYFLTENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LG54</accession>
    <name>A0A7D9LG54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018212">
        <property type="protein sequence ID" value="CAB4032204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LG54"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="24196" checksum="C7ABDC4FEA2678C4" modified="2020-12-02" version="1" fragment="single">AITLSSFPDEWKVARVMPLYKNGQRSIPGNYRPISVLPAISKIMERILYDQLYNYLTKFEILSDSQFGFRKFHSTASALLDCTNDWYVNLDRKMFNLVVLIDLKKAFDTVDHQILLNKLELYGIKGQALTLLKSYLTNRNQKCQIKNSFSSERLIKCGVPQGSILGPLFFLLYINDLPHCLNKTKPRLFADDTNLTASANSMTDLETAVNSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M4Z2</accession>
    <name>A0A7D9M4Z2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4371 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020684</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031277">
        <property type="protein sequence ID" value="CAB4042999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M4Z2"/>
    <dbReference type="OrthoDB" id="10034127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF37">
        <property type="entry name" value="OS05G0311600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="3"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12621" checksum="7A591C6B4C9C9CC1" modified="2020-12-02" version="1" fragment="single">PEHKIWLKTVFNTIKYLVADGLSFRGHDENSKLEEDLAGGLYLNTLSDLIFAQDPHLQQIAKNLPTNAKYTSPEIQNEVIETLAGIVRETVANECKEAELFTLIMDGTTDSSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M786</accession>
    <name>A0A7D9M786_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064553</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030623">
        <property type="protein sequence ID" value="CAB4042688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M786"/>
    <dbReference type="OrthoDB" id="10446222at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="20508" checksum="BF75E4526752BF4B" modified="2020-12-02" version="1">MFALRAPCKESGQKWNNTIKYFGENFLIGLFLPNLLAKVSVVNILCVVALGTSLTTFNALSSYGLISLLPWFSKKSTVTLSIVSYIRVIGLVATIIDVIPDNTGDKGLLVLPMVFIYLATLLVLNGFVSVVKVKEEDTALDRPLQTTGQDKEQDKDINDSTINSKINKVVIFAIYTDEMSVKNEQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FG00</accession>
    <name>A0A6S7FG00_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Helicase with zinc finger domain 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A089201</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA2/NAM7 helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000014">
        <property type="protein sequence ID" value="CAB3976802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="2285229at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:RNA nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06503">
        <property type="entry name" value="ATP-synt_Fo_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001803">
        <property type="entry name" value="Helicase with zinc finger 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001313">
        <property type="entry name" value="Helicase with zinc finger domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000419">
        <property type="entry name" value="Probable helicase with zinc finger domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000453">
        <property type="entry name" value="Probable helicase with zinc finger domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050534">
        <property type="entry name" value="Coronavir_polyprotein_1ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001900">
        <property type="entry name" value="RNase_II/R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047187">
        <property type="entry name" value="SF1_C_Upf1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000571">
        <property type="entry name" value="Znf_CCCH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43788">
        <property type="entry name" value="DNA2/NAM7 HELICASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43788:SF16">
        <property type="entry name" value="HELICASE WITH ZINC FINGER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00773">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00955">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00356">
        <property type="entry name" value="ZnF_C3H1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50103">
        <property type="entry name" value="ZF_C3H1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="190"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="301"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1640"/>
            <end position="1723"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1746"/>
            <end position="1775"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="2691"/>
            <end position="2740"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="2924"/>
            <end position="2957"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="3553"/>
            <end position="3613"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="3628"/>
            <end position="3718"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="3839"/>
            <end position="3896"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="3947"/>
            <end position="4004"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="4997"/>
            <end position="5061"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="5085"/>
            <end position="5129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="5856"/>
            <end position="5897"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="6057"/>
            <end position="6094"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="6351"/>
            <end position="6430"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="190"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1642"/>
            <end position="1653"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1655"/>
            <end position="1666"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1693"/>
            <end position="1706"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="2691"/>
            <end position="2700"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="2924"/>
            <end position="2933"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="2943"/>
            <end position="2954"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="3553"/>
            <end position="3574"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="3628"/>
            <end position="3685"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="3843"/>
            <end position="3853"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="3854"/>
            <end position="3871"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="3882"/>
            <end position="3892"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="3980"/>
            <end position="3990"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="5027"/>
            <end position="5039"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="5047"/>
            <end position="5061"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="5085"/>
            <end position="5110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="5883"/>
            <end position="5896"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="6078"/>
            <end position="6094"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="6351"/>
            <end position="6361"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="6370"/>
            <end position="6379"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="6406"/>
            <end position="6426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3976802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="6898" mass="787985" checksum="AB51967C0F72DB95" modified="2020-12-02" version="1">[encoded data, 6898 characters]</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FIY2</accession>
    <name>A0A6S7FIY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Scavenger receptor cysteine-rich type 1 M130</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A031669</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000046">
        <property type="protein sequence ID" value="CAB3977427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FIY2"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051532">
        <property type="entry name" value="Ester_Hydrolysis_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30383">
        <property type="entry name" value="THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="71"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="105"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="74"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="124"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3977427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="334" mass="37079" checksum="A7D4352B0FF885D0" modified="2020-12-02" version="1">MNILRQENASLKVENEALKDSLYTAKFALSDLNTKVKDLEHEKASLTTTLKILYMDFHQAHEARFKQQDPPIVVNNNNHANDKSPSSIAERDVGNCLSHTADETILIPDDQPDTDNKVCPTAQKRPKSGKVKAKPKSQKDNEINQVEQQSSKQNSNAQLSDKSQSPKKKVTAVLGDSIIKNLQGWRLSDDNNHVVVKSFAGANCTDMEDYLKPVVRKEPENIILHVGTNDLNKSASPDQIAQGIINLGIQINQDSPAQTSITISEILPRTDKSNLLIKASQVNDIVKKYCDQNKWDYINHKAINATCLNSKGLHLNKKGTAIIAKSISSYIINH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FN96</accession>
    <name>A0A6S7FN96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107342904</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025441</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000380">
        <property type="protein sequence ID" value="CAB3981354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FN96"/>
    <dbReference type="OrthoDB" id="8046937at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="230"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="544"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="656"/>
            <end position="704"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="142"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="156"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="230"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="544"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="656"/>
            <end position="684"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="821"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="821" mass="92500" checksum="F520252A9E4D9812" modified="2020-12-02" version="1" fragment="single">MSEINVECDAKSLKNLENEINQEQSAKLDGNGNDLRQLKRARSTAKGILSKRQNELTDIFSKTDNSSELEKKLSEMHKALEKFRTAHDAFHDNLQDEDDILESNDYYEAVIERFSDLKERATQKLCLWKQDNVELDIRPEDSVSNAGSRAGSESQVTSMSKLSKRSSNSSVSVSRARASAKKAILEAQSASLAKRQALQEEQLRLQQKADQLDLETELAKAQAEERAYLEADKKSDVSFSKRDKSETSSFSKQVPLLKSTINSNRKHYTTAFQKQSNDTYTEKVSVTHPSTLEAKIPQDHPVPPHLHLQKRNENVLSFPGADKETKNLETNRGATASPIEQLLLQQQRHTLALMLPQPEIPTFDGDPIEFQNFIRAFETLIELKTDSDSARLYYLVQYTAGDARELMKSCLSMNGPDGYVEARKALKQKYGQKYKIASAYVDRVTNGPSIKSEDANSLQKFSILLTSCKNALKDIGYLSKIENPESLRKIVNRLPYALRRKWRDVADNITENQEREITIDDISTFVAKVARAAAHPIFGDLNGDSKELKGRDEQNHLRRRGENKPRSNFAVDGKQNSADQYARPTIKCPQCDANHWLSQCTQFRTMSLIDRFNLVRKRGLCDNCLTRGHLARNCPKKSFCKVQDCKEVHSTFLHESSSDKKLTRPKGNENEEPDKDNTESKSETKAQSGYIKSAKHQSKTTSNNSTTIGLAIVPVKVRAAGSERIVQTYAFLDGGSNTSFCSENLMRQLNIEGKRTNLTLTTLGKANSKTESSIVSLELSDLQDENHVSLKTVFSTPVLPVTTRNRASQQDIRQWPHLSNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWN8</accession>
    <name>A0A6S7FWN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A031783</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000444">
        <property type="protein sequence ID" value="CAB3981913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWN8"/>
    <dbReference type="OrthoDB" id="7635474at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="203"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="241"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="38"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="241"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="269"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="35082" checksum="C594916D60B0BA69" modified="2020-12-02" version="1">MEDLKRAKITRRAQRAQATKTWNKAEALMNDEINETNIQRLQVVLQTFDTKIEQLKKLDENISCKIETEKELESEIVEADDYLSEAGEETNKLNNLSQSPDTLPSISSLLTNTSRYKNLGGNYSNSKFKTPPNPSKPKACTFCNGSHKPNDCTVVSDPAARKQIAFQANLCFNCLNNHRVSQCKSKNRCRQCHQKHHTSLCVGNKERPEQQKPDPNTRQNIKDKDRNVQCMCTNGGDVAQTTNTSEQTSEVRATTSFGICPTTDEPSDEKDQPSENPPQREKRSAAVAAKKRRSRTCQCTNISNHSYSNLIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0Q9</accession>
    <name>A0A6S7G0Q9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A050780</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000475">
        <property type="protein sequence ID" value="CAB3982172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0Q9"/>
    <dbReference type="OrthoDB" id="10311780at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="110"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="168"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3982172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="30514" checksum="886163C762C3EB75" modified="2020-12-02" version="1">MSFSDSSDDLELMELSDEPATTPIKAKSKRKRKIPSSLADIYDTNMEEDRDEKKAKKGWCIIEWDGEDTYDPVLCKDIFPADELPMTSIAFCPGEIVSALCQGKRYKGRIAAFAVLISAAVAVGGYVALPLIQPSNQYATNNLTVTPSPVNVTTPLPVSPASPQYRHPSTPSSRPSPSHALSTSSTSCSPAQPQESQAAIPHQLKSKASAAGNFKKAARILAVSMFTVEERKQSTLTGDFLRHIYPKTFNAFQVNRVVGQVLIETRLGRHQLNGETAATST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G409</accession>
    <name>A0A6S7G409_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087079</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000835">
        <property type="protein sequence ID" value="CAB3985163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G409"/>
    <dbReference type="OrthoDB" id="10050666at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="1">
        <location>
            <begin position="269"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="36573" checksum="C16D653DB36FAC56" modified="2020-12-02" version="1">MNKVSQESGKSHFLYVQGLGQNDCLEIPNALSIKDLSVARSCIPTKGDISKWSHLNDVHIPELKNPEVTLLIGTDVPEAHWKMEERRGRKKEPYAIRTPLGWSVAGPMGTTSESEFSAFFVREEDEFLGRTAEKMFEMDFSEKQWINGPNFLRKTEDTWPNRPEGINVLPDDKLEWKREVEIYETQTEEIKPLDTFIQHYSCWYRLQKGIAWLNRFIKYLRVPNSNSVSYKNDGTQADISTRSRDEVTGAGVGPLTVDDLQNARKQLIRYWPMAVVEEVFADKDGMVRQVMIRSNGGKFKRHVRELCLVEEAKEVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G571</accession>
    <name>A0A6S7G571_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000686">
        <property type="protein sequence ID" value="CAB3984012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G571"/>
    <dbReference type="OrthoDB" id="6422898at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="280" mass="31670" checksum="B412737F1E9DCD90" modified="2020-12-02" version="1">MPLPEEIDAENRDREIRVLNIAYPQTIENVHEKQCGIHIKINMGNITRSNQVVKYQTPMMYLPAGHYGLDEMLDYLNELVDEYDMVFVKQDGGRVGVKFNGDIQYVYQTIGTPYSELSAPFSGGAETSFDFEMTPSLEYMLGLKEWVVHPDMIAAKIGHSKADLPWLQFIQIAGNKQKLEHFTFYGKYMPDLSNGVSKLMIYCDEVEQSIVGDTKARLLASVPIDVEKQGSPYLAVYAPPDMSRKLIKGRINALHIGVYDTHYDPINFSAGVITLEAIIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6M8</accession>
    <name>A0A6S7G6M8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Eukaryotic translation initiation factor 4E type 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A007321</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the eukaryotic initiation factor 4E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000373">
        <property type="protein sequence ID" value="CAB3981300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6M8"/>
    <dbReference type="OrthoDB" id="17977at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016281">
        <property type="term" value="C:eukaryotic translation initiation factor 4F complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000340">
        <property type="term" value="F:RNA 7-methylguanosine cap binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.760.10:FF:000007">
        <property type="entry name" value="Eukaryotic translation initiation factor 4E family member 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.760.10">
        <property type="entry name" value="RNA Cap, Translation Initiation Factor Eif4e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023398">
        <property type="entry name" value="TIF_eIF4e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001040">
        <property type="entry name" value="TIF_eIF_4E"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11960">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11960:SF66">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TYPE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01652">
        <property type="entry name" value="IF4E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55418">
        <property type="entry name" value="eIF4e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 7" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="5 6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3981300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="27332" checksum="A94A4D414B27C22C" modified="2020-12-02" version="1">MAVPPGSLDFSDISPVPLSSSPSRTILTEAFNSPKLTRKFLEQISSVDKSGLPLNTAWTLWLDRFVRNATAAEYAANLRKVYTVKTIQSFWSVFNNIPAASKLGFRTSYHMMRGERRPVWEDDENICGGYWKMRCPKGYTDQAWKELLLAIIGEQSLNDVLADGDEIVGLSVSIRDRDDILQIWNAKANLASESKVLKKISEILPQLNIEDAFYKFHRDHHAFEGQRVISRPLGFPTSGPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GBT6</accession>
    <name>A0A6S7GBT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A059203</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the folate receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001338">
        <property type="protein sequence ID" value="CAB3988533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GBT6"/>
    <dbReference type="OrthoDB" id="567542at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009897">
        <property type="term" value="C:external side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004269">
        <property type="entry name" value="Folate_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018143">
        <property type="entry name" value="Folate_rcpt-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10517">
        <property type="entry name" value="FOLATE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10517:SF14">
        <property type="entry name" value="FOLATE RECEPTOR 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03024">
        <property type="entry name" value="Folate_rec"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3988533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="484" mass="55180" checksum="82CE6EAF78C835CD" modified="2020-12-02" version="1">MVGFRDKTKRVRAHLLLVLCTLCAVQMPSATSTADNLDRCLNGKHHKKSPGAEGAGLKKYHCSPWAERSCCTNETAQSIKQDGVFTLYNMKWNHCSRNLSKACRDWFIKDTCFYECSPNLGPFLVVDKRSKITRKERVINVPLCASDCDAWFEACRDDLTCSDNWGKNWKWTKQGNQCIKECRTFKEYFQDSSTFCNNIFDRTFEYAHGKAGEDCLSLWPNVSKDGKNPNENVARIVQKSHAQYAAVGEKVVNFLDTCVATNYHKSKPGPELDITECVPWRGHACCTKNTTDAIKKDGGVSLFNMKWDHCGNLSKKCKDYFIKDTCFYSCSPNLAPWIVKDNVPKKARTERVMNIPLCSDECDGWFEACKDDYTCSDNWGETWKWSKKGNECKLPCKRFKDYYKDPVSFCNKIFDHSFEYTDGEHGKDCMSLWPDSDIRDLNRELASKVALTLVSAGISLNPPVFANIGFIVYAALFLQKLLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GF12</accession>
    <name>A0A6S7GF12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021794</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001965">
        <property type="protein sequence ID" value="CAB3992024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GF12"/>
    <dbReference type="OrthoDB" id="5952997at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="162" mass="18565" checksum="18D652ED2DC4692A" modified="2020-12-02" version="1">MEMADVQVLVQSVANKQQQNKRKRDPDMYLDAVLECTVRKLNRERMERDEVLRKRQRTEVDDRTGYCASTDASLSGKSLIECPRTLNNDSTLSKSTDCDLDTDFASLENELSGDLKDLLDELSREFPCDFWVTDTNNNTPVETKDSEGDMWFSSFIEVLCST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIX2</accession>
    <name>A0A6S7GIX2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000801">
        <property type="protein sequence ID" value="CAB3984921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIX2"/>
    <dbReference type="OrthoDB" id="5988333at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="563"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="45"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="584" mass="65738" checksum="D2CBCC245D6472A4" modified="2020-12-02" version="1">MTSKTSNEVQVDVHRESSETASSSGRRREPHSLLEQTTTADSRSNQQTQLQQNQQTQLQQTLEQGFGKMATSLSTAIENAFKNFSDKFDVGPIEDELLTELEEGELERNGNANGSDGENGRQNDRHSQEEPDVSDGTNVQRMIERAKTQNATEQAKEPSVLDGIRGEMKTAETGPKFNDDLAEIVNGLVQKGLSEEKLQDKLNKYPSPENCEALSKMRVNQLIWDNLQPNSRSQDLRFQKVQTALIKGMAAIVRATDTALAHITTLPAGKEIVESMTDAIALCAHANSELNIRRKELIKPDLHEDYKHLCSASVPSSSQLFGDDLSKQVKDLTEVNKVGRKMTRHKNKPYARAPAYSYRGRNRNIRPKPFLGERQVASASLHFHNKSIKIGGRLKQFIHFWEKLTSDKFILETIAGYKIEFKPEAICDHNWSRNPETKFNDKEQCIIDNEIDKLMCKGVIEVTQHSLGEFISPIFIRAKKDGSHRLILNLKELNTNVEYHHFIMETLQSAVALMRPGSLEMLKSEALKSSKGNFEPLVSTNNECVEDLQWWVDNIENAFKPVERPEADMGGDGLASNPKNTLIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GMX4</accession>
    <name>A0A6S7GMX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077583</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002158">
        <property type="protein sequence ID" value="CAB3992963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GMX4"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="10969" checksum="5F859354B272862A" modified="2020-12-02" version="1" fragment="single">MKTGIPQGSGLGPLLFLIYINDLPKCLNAGTKPDMFADDTQIATSSDDIKVITETLNRDLNNVANWLSANKLTLNNSKTEYMIIGSKKRLSQVTADPAISI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNB4</accession>
    <name>A0A6S7GNB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Protocadherin Fat 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A074960</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001824">
        <property type="protein sequence ID" value="CAB3991312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNB4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11304">
        <property type="entry name" value="Cadherin_repeat"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000020">
        <property type="entry name" value="Dachsous cadherin-related 1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.60:FF:000033">
        <property type="entry name" value="FAT atypical cadherin 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.60">
        <property type="entry name" value="Cadherins"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002126">
        <property type="entry name" value="Cadherin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015919">
        <property type="entry name" value="Cadherin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020894">
        <property type="entry name" value="Cadherin_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24026">
        <property type="entry name" value="FAT ATYPICAL CADHERIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24026:SF126">
        <property type="entry name" value="PROTOCADHERIN FAT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00028">
        <property type="entry name" value="Cadherin"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00205">
        <property type="entry name" value="CADHERIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00112">
        <property type="entry name" value="CA"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49313">
        <property type="entry name" value="Cadherin-like"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00232">
        <property type="entry name" value="CADHERIN_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50268">
        <property type="entry name" value="CADHERIN_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="609"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="578"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="651"/>
            <end position="676"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="578"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="651"/>
            <end position="669"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3991312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="693" mass="78590" checksum="EDB7E423D86ADA8F" modified="2020-12-02" version="1">MRGLVAESTFVTIRAIDPTIIFSDTYNNRTYDLPEKNETTSDGYKDVLIFGAREKKTGYYYWYWARRISCSITKGNVNNTFIVTYRSYYYGYGDDDQYFKLRVRSLQLDREATSEYNIEITCKNIEYKDATRAVTTIHVQILDANDNLPVFEKEIYNAKIPKSIKGGEDIIQVVATDDDIDENGKIRYSLVHSSDSYIFTIDEMSGVISLKSVEQLARPYYTLTAVATDQGTPPRSGYVTVALEVQNFPTPNRTNNNPIFVQHQYTAYLLWGTPRGTVVTTVHAHDPVTFDHQNIRYSLFSGDDSVFKVDSKTGVITTKGDVKKMQYNLNIAAEYEKKPGQKPGEFYNITSVVVLVRKIDTSQPHFEESHYTAAISENTRINTKVLTVKAFYKHKERLEYSIPTPRGMFKIDKDSGDITLIAELDYEKEQHHTFVVSAKDPKSPKKSTCTDVTINVLDYNDNAPVINYYPRSITVKLGIKGRREIGHISASDKDNGTNSEIKYYLDSSDYNGVFSIDRDNGKLYVNGALFVTGSLHCCDVPHDYSSCNCTLRVTAKDQGIPPKEAEVEIIIIPYDPKKHHNPTRHIHNPSDAHHTGKHHGHNSSNQKTYIIASVIGGVVIIIILAGAIYWQRRRRQRMYASTTMNYMNLPSDEEDEDLLDPASDHEDDNDNGRRLSLISAASDDNLLRNEAPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GT24</accession>
    <name>A0A6S7GT24_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ribonucleoside-diphosphate reductase</fullName>
            <ecNumber evidence="2">1.17.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A058136</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
        <text evidence="8">Binds 2 iron ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ribonucleoside diphosphate reductase small chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.4.1" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020002210">
        <property type="protein sequence ID" value="CAB3993219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GT24"/>
    <dbReference type="OrthoDB" id="10248373at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009263">
        <property type="term" value="P:deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01049">
        <property type="entry name" value="RNRR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.620.20:FF:000004">
        <property type="entry name" value="Ribonucleoside-diphosphate reductase subunit M2 B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="entry name" value="Ribonucleotide Reductase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033909">
        <property type="entry name" value="RNR_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030475">
        <property type="entry name" value="RNR_small_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000358">
        <property type="entry name" value="RNR_small_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409">
        <property type="entry name" value="RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409:SF18">
        <property type="entry name" value="RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00268">
        <property type="entry name" value="Ribonuc_red_sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000355">
        <property type="entry name" value="NrdB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="Ferritin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00368">
        <property type="entry name" value="RIBORED_SMALL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0215">Deoxyribonucleotide synthesis</keyword>
    <keyword evidence="5 8" id="KW-0408">Iron</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="18"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000355-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000355-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3993219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="42463" checksum="79F5F44384AC1A43" modified="2020-12-02" version="1">MLSGIDYPDNRNVEEMNNNIKNLNLKDSKGKDKKKSKKANVQDEPLLRENPRRFVILPIQYQDIWQMYKKAEASFWTAEEVDLSRDLGHWDGLKPEERHFISHILAFFAASDGIVNENLVECFSQEVQVPEARCFYGFQIAMENIHSEMYSLLIDTYIKEPNERERLFNAIEHLPCVKRKADWALDWINPDKASFGERIVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKHLKNKPSEEKVKKIIMDAVKIEQEFLTDALPVRLIGMNEDLMKIYIQFVADRLLVALGYSKVYKSENPFDFMELISLSGKTNFFEKRVGEYQKSGVMASTQQNTSHKLEFDLNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUL3</accession>
    <name>A0A6S7GUL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003026">
        <property type="protein sequence ID" value="CAB3997114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6073759at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09076">
        <property type="entry name" value="L1-EN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1446" mass="164224" checksum="BE35B843F4C934C1" modified="2020-12-02" version="1">MLGRLTRRLNKSEVESCDGELSEAECRAALHGMSRGKTPGSDGFPMEFFVCFWDLLGPDLVRILNLAYQQGQLSISQRRGIIIVLYKKHDRLETKNYRPISLLNVDYKIATRAIAGRLLGVIGSIVGYDQTCGIPGHTISENLMLMRDLIEYADRADIPLALLSLDQEKAYDRATFDIYAQYERASGAKLNHGKSKGLWLGAWKDRQDTPHGINWVKELLLLGATISAGDYSTATWEAPVAKVEKRLSSWKGRQLTYQGKATVINTLGLSQIWHLCHVFTIPEWAKKRIVKATWGFFWSGRRDLVVRRTVCLPKGQGGFGVIDFDLKAKAFAIQWVKRYFAPTPAKWKAFFSFFSHLVDVNWKIAHGVLYTASRLKLSSISSLSVDTTTVVKHYLWVARNDFRFRDKRRTEADCLKAIIARLKFLLKVLASRCRSPSQIRSFEKQWLASLVLVLWLSLFLRLSVNGGRLHWLYCPDRLAFYIRKQRSGSGRIRCQTYHLSHNTLYIYFPGRNLHLVFLLYVTCLPTEFQAIAHTFQVLINWLVCHSSAHVLPVKLTKYQVNIQTSHYFTGAKADMFATLVSWLMPHGRRAPLHDGTRVRESTARVAHKCSSVDPCAIYNFLGGADHVEAKAINVRQVIDELRSQFRRLNFEPYGRIKLIKSEQYSNIYTGVRNVLMEARKKSAFNVLSLLCRIKYFCSGGNGVKERLSPLLQTFLVFFQTHGLRDQAKRNALFSWLNCVKADVVCLQETHSISRDEFVTWVSLESDAANNLQHYSVLSSPGSLCSRGIAVLYKPSLSVDAEIFDDIGRLQVIKFSVCGTASSSFQLVNVYGPNRKPDGEVFFESIGSQVDASLPTIVCGDFNTVVDPAIDRFGCNPTSPWAYNWPRSLQDFTHELDLHDIWRLRNPNTRSYTWHRANGLQASRLDMFWVSSSLLSHVIDVSIYPFFRSDHSYVFLQLTLPSLPRRGPGVWKLNASLLKDDNYKQKIQEFWQAWQLEQGTFPSLAVWWDAGKKRIRALTRRYSQQLARARRARIKSLENTLFHLHHRQQNGEDVSAWLNEAKTDLELEHLHVANGARIRSREQWAEEGETSSSYFFRQEKSRAIKRLFSGIKNAQGLVVHSISAIIRVWCLFYVQLFTAAILVPGDQAFFLGSLERSLSHTESALCEGAITEDECLKALRQMKNNKSPGVDGLPYEFYTRFWPVLGTDLISVYNDCFSSGCLSFSQQTGLITLLYKKGDKLDTKNWHPISLLCTDYKILAKVLTNRLVAVISSVVGPEQVCGVPSRLSSENIRLIKDAVDYANGSAMSAALVSLDQEKAFDRVDWSFMLRVLEAMNFGPSFRSWVQLLYTSLFSQVLVDDYVSQLFPVTRGVRQGCPLSPLLYILVAETIACAIRQDPNIDGLLLPNGSHTKLFQYADDTSIFVMSDQSLLALFLCLNDMNVHPGQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXX3</accession>
    <name>A0A6S7GXX3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="19">Voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A024575</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002871">
        <property type="protein sequence ID" value="CAB3996445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXX3"/>
    <dbReference type="OrthoDB" id="5982588at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098793">
        <property type="term" value="C:presynapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005891">
        <property type="term" value="C:voltage-gated calcium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008331">
        <property type="term" value="F:high voltage-gated calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098703">
        <property type="term" value="P:calcium ion import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000059">
        <property type="entry name" value="Sodium channel protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000068">
        <property type="entry name" value="Voltage-dependent N-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.350:FF:000011">
        <property type="entry name" value="Voltage-dependent N-type calcium channel subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000117">
        <property type="entry name" value="Voltage-gated Ca2+ channel, alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="entry name" value="Voltage-gated potassium channels. Chain C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031649">
        <property type="entry name" value="GPHH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014873">
        <property type="entry name" value="VDCC_a1su_IQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050599">
        <property type="entry name" value="VDCC_alpha-1_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45628">
        <property type="entry name" value="VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45628:SF7">
        <property type="entry name" value="VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08763">
        <property type="entry name" value="Ca_chan_IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16905">
        <property type="entry name" value="GPHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01062">
        <property type="entry name" value="Ca_chan_IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0106">Calcium</keyword>
    <keyword evidence="6" id="KW-0107">Calcium channel</keyword>
    <keyword evidence="5" id="KW-0109">Calcium transport</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="15" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="16" id="KW-0407">Ion channel</keyword>
    <keyword evidence="12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="13 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0677">Repeat</keyword>
    <keyword evidence="7 18" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 18" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <keyword evidence="10" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="129"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="248"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="327"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="358"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="390"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="452"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="543"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="754"/>
            <end position="791"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB3996445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="982" mass="112349" checksum="748434F11E6F7E32" modified="2020-12-02" version="1">MIAISSLSLAIEDPVEPFGQSERNKILAYFDWVFTVVFAIEVVIKIIDMGAILHKGSYFRDPWNVIDAVVVCANVATLVIRTSSSEIGSGKDILKCLRVLRVLRPLKAINKSRKLKTVFQCMVYSLKNVINIILITLLFLFIFAVIGVQLFQGKLFYCTDPSKRTEDTCKGQFFNYYRAGQHEDIASYKVTKREWKKRVFNFDSLPHAMLTLFSSLTGEGWPTTMYHTVDATEVNMGPIRDYKIHMSIYYVCFVVVFAFFFINIFVALIIVTFQESGERNILASDLDRNQRDCIQFAINAKPRQRFMPEDKSTISYKMWVLVESKPFEITIMVLIALNAVVLMMSYDGMSEAYENTLIYMNTGFTILFTIEAILKLVAFRTNYFRDGWNIFDFIIVLITFSGVILNFVRGTSDIPIDPTFFRLFRAARLIKLIRQGYTIRMLLWTFLQSLKALPYVVTLMAILFFIYAVVGMQLFGRIQLNDTTNIKHHNNFQSFPRALQVLFRAATGESWHLVMKDCFGQALCDSRAGQGHGAKCGNTAASIIYFCSFYFLCSFLMLNLFVAVILDNFEYLTRDESILGPHHLDEFVRVWSEYDPTATGRITHKNVYRLMCDMSPPVGFGRKCPRFLAYKRLIKMNMPIMGDSTVLFTSTLVALIRTALGIHNNGEPSRGDEELRQVIKRLWPKVSPKILNRMVPRDSVLSSHQLTIGKVYCAKLIYENYKNRKRKQEEMEFRGRKKRQPSLFRRLMGALRTSSSGLEDEETGNQDHLRPPPAAHLDRRRRSRTLNTPPLALRDKASNSVKISKNKSMKFFRKKRNAANRSTVSGRIVTFSEEIPMDLTDIKPTIIDCEESQRILPKPRSYTFDNPALSIDDEKFIPNLVRKSPSYPIYKGTWPPLTPALVILQVPTLERTPPPPTPPALDPSFPDVIRSAEASPRPSLTSVIQDANLIKEINERIAEAVNRGQSPYSIYAIKDGDEASWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GY91</accession>
    <name>A0A6S7GY91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070697</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001658">
        <property type="protein sequence ID" value="CAB3990437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GY91"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="15006" checksum="D265970FAFA6D037" modified="2020-12-02" version="1" fragment="single">MEGIKLDMTILESRMLAAISENEHESDIISLRVKLVDMEAVVHNQDEIISRLSEENLSFRSRLLNLEKLVHFMSQEYRNKSSGAINLSNITKEPSTRNRKQSINLNKNSLSSPRNIDNNLPNDNHKYVSPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H211</accession>
    <name>A0A6S7H211_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061286</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002905">
        <property type="protein sequence ID" value="CAB3996609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H211"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="43411" checksum="3458D7ED12BD10B8" modified="2020-12-02" version="1">MNDYFSSIGSTLANKIKDLIKPKPTKTTATSPHSFNFKEVDEVSVLQELSKLRTTKATGLDGISAKLLRDSAYIIAPYLTKIFNLSLRCGSFPDIWKKGRVTPIFKSGDPTSSNNYRPITILQTLSKLLERIVHHQVYNYLQEHKLLASQQFGFRSKLSTTIALAHFTEQILDNLDHRKITGAVSIDLRKAFDTVDHTILLEKLKTIGFTSSVLDWFSSYLSNRTQVTVINSSMSQPKPVTVGVPQGSILGPLLFLIYINDLPECLTHCKSILYADDTLLYYSAESISDLQSKLNSDLRSLSDEMLENLFQTNTPKRCLDRDEPDTFDADRKSTTFAYYVCLLILLEPLRCVENMTSEAYRDNIKSRWRILMADSDFGHFKCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4L9</accession>
    <name>A0A6S7H4L9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RWD domain-containing protein 3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A073896</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001910">
        <property type="protein sequence ID" value="CAB3991747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4L9"/>
    <dbReference type="OrthoDB" id="167315at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902073">
        <property type="term" value="P:positive regulation of hypoxia-inducible factor-1alpha signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033235">
        <property type="term" value="P:positive regulation of protein sumoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.110.10">
        <property type="entry name" value="Ubiquitin Conjugating Enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006575">
        <property type="entry name" value="RWD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038840">
        <property type="entry name" value="RWDD3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15628">
        <property type="entry name" value="RWD DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15628:SF1">
        <property type="entry name" value="RWD DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05773">
        <property type="entry name" value="RWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00591">
        <property type="entry name" value="RWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50908">
        <property type="entry name" value="RWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3991747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="32458" checksum="63B364B8DF47CB5B" modified="2020-12-02" version="1">MANVEERVQLIFDELKVLDSIFCAKDEFLVNDGRLDADIESSCRNLVEGKVENLQLTVKIPSENTEMRLGVSLSKDYPSSLPGISVLSTQLTRKKTSEIQELLKGHAKESLAQFSEPIVLKLVEWLQEKISEICLETEIQVSRKRPVNDDKLYICVLKFDHMRSRKKYLKTITNWVTELNLNGCILFWEKIIIEIIEGFKSDISKYLKRLRTCTVDVDSAGRACKERMMDVLCEVENTSQNRIASGFQTLDCTSLKEFEQIFQNHRLFDIYQTYVKDAIIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H724</accession>
    <name>A0A6S7H724_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A021141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003410">
        <property type="protein sequence ID" value="CAB3998676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H724"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="16539" checksum="50C76EDF4A938101" modified="2020-12-02" version="1">MSSIFLPWTKNRQHLAYPHTTTTCCHNNNTETDRADPSETNTSQTKGGGKKPVAKCKRPNNTEMQFSDDQNMYQRVRYLLESDDEDYDRAKVIKESISLYACVCVDVHSRFARIRKVIENKIGSECREKIRGTSLRAGSATKSTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCP6</accession>
    <name>A0A6S7HCP6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P2X purinoreceptor 7 intracellular domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A075446</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003951">
        <property type="protein sequence ID" value="CAB4000883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCP6"/>
    <dbReference type="OrthoDB" id="5967828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046815">
        <property type="entry name" value="P2RX7_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981:SF1">
        <property type="entry name" value="P2X PURINORECEPTOR 7 INTRACELLULAR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36981">
        <property type="entry name" value="ZGC:195170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20478">
        <property type="entry name" value="P2RX7_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="40"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="P2X purinoreceptor 7 intracellular" evidence="2">
        <location>
            <begin position="116"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4000883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24424" checksum="59045D090B3CE3BE" modified="2020-12-02" version="1">MDIDYSNESSSDGSGSSGSSYSEDMNVERDVNMIQPYAFEPVETDSSGDHEDSEEMASESSSSSDKTTRLQDTNWCLCTHCQVMDREEESICCHENPACVSINQEAAQIEEIPVPECITDNPAFQYLCLNYWVLRVAWSDYRQHYGIKAHEEPEHKKRRHVAYRQFVRWCWDILGKEIRVPLPSCAVSCIRAHFPPPGLEEDFVFEGFKFADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HE27</accession>
    <name>A0A6S7HE27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014499</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004108">
        <property type="protein sequence ID" value="CAB4001527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HE27"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13827" checksum="A459DEC289FB4117" modified="2020-12-02" version="1">MRSYNDRQKLHKRDGLWGRQKRPGTETPVGTPHRSKTDGPCCVRRAEEVGKLGYARRQKEADAIPITKESEVPVDIPTKIDVKANWVRAIAKMSQMINHTAQKRSPRTHNFARVVEVASQGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFB1</accession>
    <name>A0A6S7HFB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">THAP domain-containing 9, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A034211</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004499">
        <property type="protein sequence ID" value="CAB4002969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFB1"/>
    <dbReference type="OrthoDB" id="7312725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048367">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47577:SF2">
        <property type="entry name" value="THAP DOMAIN CONTAINING 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47577">
        <property type="entry name" value="THAP DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21789">
        <property type="entry name" value="TNP-like_RNaseH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP9-like helix-turn-helix" evidence="1">
        <location>
            <begin position="35"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="2">
        <location>
            <begin position="120"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="3">
        <location>
            <begin position="279"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H C-terminal" evidence="4">
        <location>
            <begin position="470"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF21789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4002969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="735" mass="83810" checksum="47FB806E1719ECF9" modified="2020-12-02" version="1">MKKFKKTLKKKNNKIKSLSAKNLRKEKTIKGLVKKLEEIKTLSEEQSQHLMSNFGHMTKDIFTNEQKNEGNSTGSRYSEQIKQFAIFLHFYSAKAYKFVRKSLHLPHPSTIRSWASSIECEPGFLSNVIEHLQNTLEDDNKDCIILVDEMSIKKEVLWDAKKQKFAGNTDYGPILAEDQDTIAHNALVVMAVGLQKPWSYPIAYFLVNHMDSKMQAQIIKESINLLTDAGLDVHAVTFDGCSKNLATARRLGCKIDSFDGSFQHPTRPGKTLYVILDICHMLKLARNALGDKEIFYTSGGETISWYYIKELFNVQQSDILHLGNKLKNVHIKWHNQKMKVAVAAQTLSSSVAAGMIYLRNLNVKQFEKCEQTAEFIQNINDIFDILNTKSKFGKRFKSPLTLENYAELRAHRLDIISYLKKLKDVDGTKLVDGPRKTFILGFAVSANSILAIAKNLLSREHNNFKYVLTYRFSQDQIEMFFSKIRGRFGWNNNPNALQFKWALRALLQKNQIAASEKANCAVIEEEKMDEEMHHVDHNIIMSLTCSTIWRDDVLAYIAGYIVKKITVCIKCPECAIALVAIDKSQAEVLVPDDHSYSSNSKPESQSLITIKSYGKLITPSPSVVKVVKATDRNLRQLVGDWTSVTKTAISSLKSNVLQDVKASCFQNLQQHSRESHLLDEQFRDNHITIIIKKIVDLYINIFVHRFGKVYSDRVVREGNSSRRPKLNKLILFGND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HI18</accession>
    <name>A0A6S7HI18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A009793</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TMEM121 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002532">
        <property type="protein sequence ID" value="CAB3994757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HI18"/>
    <dbReference type="OrthoDB" id="5964337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026624">
        <property type="entry name" value="CECR6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032776">
        <property type="entry name" value="CECR6/TMEM121"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47399">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 121B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47399:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 121B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14997">
        <property type="entry name" value="CECR6_TMEM121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="125"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="195"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="234"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="290"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="303"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3994757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="340" mass="38470" checksum="37172907A4A4128F" modified="2020-12-02" version="1">MAYKDKVTGENVSKCLCVILLVLQSCILDYYLVENHSLAWIGFSLVDLVIIILWIAALYIASKQCRKQTHEVRKAIRTSPDELRVAYVAWLVYAVGYAIQISFIFKTFAHKLDNAQTTTIFGQNMLKLSLTITPMLFLLLVHAHHDAVPNTSRKYYIEKLTGSVTIDLMDSIEILEILFTDVAENNLPTSFENTIIAFACINVFLPTLALHALKQKKVWHGQGGLFPSKVLYHLCYIFLVNVPLFIIRILLWVCYEQDVSVFLAKNFILIVMNSWDIVEHYFHHKRPSCSASSNDNVALEDEPSGKDETAVNAHDSGENIKIEISSLNGNEDVHLGMGYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HMU9</accession>
    <name>A0A6S7HMU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RING finger 151-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A030732</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005040">
        <property type="protein sequence ID" value="CAB4004903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HMU9"/>
    <dbReference type="OrthoDB" id="6477069at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051746">
        <property type="entry name" value="Kelch_domain_containing_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4004903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="572" mass="64669" checksum="03ECCA67A397A544" modified="2020-12-02" version="1">MASNYPLGYDDERFESIVNQNFHCLICYNVLKDPVMCRRNEHYFCRGCITEHIRRNSHTCPTCADELSVETLQDVPRIVKNYLNELSIRCDHYDRGCRELVQLQNLKRHVAECGFTPVVCGNQGCGETISKRDRTYHESELCQFRKLKCHNCGEISTMMAGMKTEIANINTNQADTRTKLANTNTSIANMDTKMADINTKMANTDTKQENMNTKMGNLQANVEAKFEAMNNEVKGIKMSLNEVKDGFDHLKEAVLEKIESDERKQEEITRDVSGTASGGRENQHIFVAGGWDRNSVEIFNYRQRLWSLLKPMPENRHSASSFIYNNHVTVAGGWCDDAVDNMIRMNIHPVPDLSINWADFAAKLPANMHAHSNVVYKDSLLVTGSLNADQGVYSDCIHEVQLKPPYTVKLVSKMPEPRLRHSTVLCDDSILIVGGRKSGYSKDTLSSVLSYDIKKNECQQLPALPYPVSEMATVKWAENVVVIGGADKDGKALNNVIIYNIKTGNSYMLPPMLHKRNGCMAVVIENTIVVLGGKDERLKYLKSVEGFNFERFSWQELPDMKEARWLATAVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPT2</accession>
    <name>A0A6S7HPT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040877</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002975">
        <property type="protein sequence ID" value="CAB3996911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HPT2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="17134" checksum="1D82E40A370A42F3" modified="2020-12-02" version="1" fragment="single">MTRSFTVRTRFLTLRTRFLTLRTRFLTLRRRFFTLRTRFLTLRTTFVTLRTRFLRLRTRFFTLRTRFLTLRTRFFTLRTRFFTLRTRFLTLRTRFLTLRTRFLTLRTTFLTLRTKFLGLRTRFFTLRTRLLTLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPU7</accession>
    <name>A0A6S7HPU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005311">
        <property type="protein sequence ID" value="CAB4005773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HPU7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="254" mass="28804" checksum="C7CD4C44ADCF9160" modified="2020-12-02" version="1">MAICNGNGKDWIAYVIAILIAILAIVLSVCAYLQCTKDKPNGGEESAIESLKAMIKKQVANLTDKAKLEREDTNRTISILSNEVTQLKHDYMELLSETGALNKTINYTTSATVQRALNELNNVKETQRVIQKKLEALSHLNDTAEDYLNLGKEVKNLATKVNQNITHLEENLKDNRREWERALDNKTSEIKSDVLALENKLDEFELKLENPKFENRTQNGTTNGVGVMRLTTKVCNLMFYTIIFWTTLNVIVHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQW9</accession>
    <name>A0A6S7HQW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057866</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005449">
        <property type="protein sequence ID" value="CAB4006223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQW9"/>
    <dbReference type="OrthoDB" id="5989494at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="561" mass="63731" checksum="E7B8813B6ABCA9EE" modified="2020-12-02" version="1">MGAWKNNGVKKNTFSHKDGNIEAAAQGDVDNTTITKPSVLKRVQAVSDISGPKETFHLVSEENSGYLQAAAASDLLRNHDQAKNCRSRLSNSKRNLKNVDSLAILLQECKRQQMSLGEDPFIRDVNAAPELRCVLGFDWQLKEIEQFCTDPRNFTIFAADPTFNLGNFNLTVTTYRHLKVVTRRDDHHPLMIGPFLISQSKTSETYNYFFGKLTALNKNLKNLLGIGTDGEEALIDAMKNKAVQKTFMHDVFGNRQGEIFEKGLVDSDSKDELYRKLDSLKVVWDERERQFISPNQSPSFSTFVYEKANMIVERMLTEVRMNAGLGNPPTPFYTNMPESANAVIKRAVNFQESEMASFALKLAQLIKRQREDVRGVLLNNGPYKLIDDYTHLQLTKEKWFSMSSTQRTAHENKFDKTWQTQDDIQEQQEEQQFITSLSFTAEEANLTTVPLQQVKHVFNKAQSLLSKENTIVSAPGSNEMAFMVASQMSKRLHYVLTRQSGKTTCENCLGWTSSRFYGHAVAVAEKLGKLDKYLDWLRRRDNPLNLTTLVTFDSNKALGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HW41</accession>
    <name>A0A6S7HW41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Palmitoleoyl- carboxylesterase notum2-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029968</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the pectinacetylesterase family. Notum subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003541">
        <property type="protein sequence ID" value="CAB3999221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HW41"/>
    <dbReference type="OrthoDB" id="2015280at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004963">
        <property type="entry name" value="PAE/NOTUM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21562">
        <property type="entry name" value="NOTUM-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21562:SF122">
        <property type="entry name" value="PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03283">
        <property type="entry name" value="PAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="474" mass="54019" checksum="7F6AA054B11FF4CB" modified="2020-12-02" version="1">MKWNRRIVWRLIILLSVFVLLSEPVSTRISKTRSKRKEHKKRHSMYKLNLRKVYVRNAKWVNASCLDGSDAAFYISRNRKNRNWVIRLQAGGSCVLFSECYDRKTTAFGSSKYLQNSITGTFLISDDPNINPTFNKWNKVFIPYCSGDLFVGRKHARDHGFGLPMLGHYIVTSVVRQLIQDYRINTKHTKILFGGASAGGIGMLSNIDHVAKMVRPARVLGYNDGGWFTLYRNYLEPSGSGAPEFLSTLRYLFKNYWDGFVDESCRAQMPQPAACLYGEMVIRYLSTPIFVMVSLWDSYQLKELNLDKYRPVHLPPSSHKEALYLAQFGNNTYKSIRRLINSNRSGVFSPACVSHTFAGVNETEAAVTMKYKIAGVTSYQALSEWYNTRGRQGTYADVPVESPRCNPTCCSKYCLRCSRASEMLVISGKRHTHDVETRKQKLKTEIVQSPTTITSGAERLRTMAFVYGVLLVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWA6</accession>
    <name>A0A6S7HWA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A078883</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003097">
        <property type="protein sequence ID" value="CAB3997437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWA6"/>
    <dbReference type="OrthoDB" id="6428437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF9">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3997437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="552" mass="63169" checksum="2E2B7A0E4D34AE21" modified="2020-12-02" version="1" fragment="single">MASFQVQPPEKFTFKPEDWLKWSRRFERFRMASGLEKESEESQVNTLIYSMGSEADEIVQSLSIAEGDQKKYDVVKKKLEDFFITKRNVIFERAKFNLRSQQEGETVDVFITDLFNLAEHCNFGVLREELIRDRIVVGIREWNNGLGELEGEYEIKLKELPEPFALNVPRKVPFPMLDKTKKEIERMLKIGVISKVDQPTVWCAPMVVTPKQNGEVRICVDLTKLNKSVLREAYPLPSVDFTLGKLSKSKALGHVISSEGVSPDSDKVKAILDIPVPTNVAEVDLSWKCLISVPILALYDPNKETKINADASSYGIGGVVLQKQENNEWKPVSYISRALTDTESRYSQIEKECLAFTWACERSSDYILGKSFSGETDHKPLVPLLTTHTLDQIPPRIQRFRMRLMRFNLEKMTHVPGKQMYTSDALSRLLKPFTKPDCCTVPEDDMNAFVETVINSLPVSDKKLKEIIEAQEEDEVCKKVKQYCLEGWPDKHMVPDAVKSYWRERGELTVVQSLIMKGTRILIPSCMRLNVLDKIHEGHLGITKCRERAKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HWE0</accession>
    <name>A0A6S7HWE0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sterol regulatory element-binding cleavage-activating</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A008228</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Golgi apparatus membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003108">
        <property type="protein sequence ID" value="CAB3997477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HWE0"/>
    <dbReference type="OrthoDB" id="361494at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032936">
        <property type="term" value="C:SREBP-SCAP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032934">
        <property type="term" value="F:sterol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045540">
        <property type="term" value="P:regulation of cholesterol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032933">
        <property type="term" value="P:SREBP signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053958">
        <property type="entry name" value="HMGCR/SNAP/NPC1-like_SSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030225">
        <property type="entry name" value="SCAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057041">
        <property type="entry name" value="SCAP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46378">
        <property type="entry name" value="STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46378:SF1">
        <property type="entry name" value="STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24006">
        <property type="entry name" value="SCAP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12349">
        <property type="entry name" value="Sterol-sensing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="6" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0853">WD repeat</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3997477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="43079" checksum="C5C7F55F55C8AB3D" modified="2020-12-02" version="1" fragment="single">MQQAKADEYPVVTERNLLERIYYYHGLFCANHPAFIIFICGVLIFLCSAPIITFSPLTAKIPSEWNETISVNGSNSEKPNWLKEKPAAYIQQIILTVLIEPVNNSRLVPYCVREAFQPVFKILNDINEHKQTERKGKRLKLTDFCFLIRHHDAFLLGEEGKILPKKGCLQISPANLWKNNVTSFQSDKNIMSKIYGKPNKNIVSLKENIFGVPLPAIGLFPANDECLVIRYAVTTVLRDFNPSFTKSLKSVLLEKLPPLYKSESDIDAHTIVHIHYEGDNVIEIYHLCFTYFMVFIYLVFSVSKIEMVKSKLGLAFSAVVTVVASLSMAAGLCIFFGMVPSVSSSEIFPYLVIIIGLENILVLTRSIVSTSPILPVPIRVAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXE2</accession>
    <name>A0A6S7HXE2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Alanine--tRNA ligase</fullName>
            <ecNumber evidence="2">6.1.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A021943</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14 15">
            <text>tRNA(Ala) + L-alanine + ATP = L-alanyl-tRNA(Ala) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:12540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:9923"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78497"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="15">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Monomer.</text>
    </comment>
    <comment type="domain">
        <text evidence="15">Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family. Alax-L subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020003504">
        <property type="protein sequence ID" value="CAB3999052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXE2"/>
    <dbReference type="OrthoDB" id="2423964at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00673">
        <property type="entry name" value="AlaRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.310.40:FF:000002">
        <property type="entry name" value="alanine--tRNA ligase, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.930.10:FF:000011">
        <property type="entry name" value="Alanine--tRNA ligase, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.980.10:FF:000004">
        <property type="entry name" value="Alanine--tRNA ligase, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.310.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.980.10">
        <property type="entry name" value="Threonyl-trna Synthetase, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00036_B">
        <property type="entry name" value="Ala_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002318">
        <property type="entry name" value="Ala-tRNA-lgiase_IIc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018162">
        <property type="entry name" value="Ala-tRNA-ligase_IIc_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018165">
        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018164">
        <property type="entry name" value="Ala-tRNA-synth_IIc_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050058">
        <property type="entry name" value="Ala-tRNA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023033">
        <property type="entry name" value="Ala_tRNA_ligase_euk/bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00344">
        <property type="entry name" value="alaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11777:SF9">
        <property type="entry name" value="ALANINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11777">
        <property type="entry name" value="ALANYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01411">
        <property type="entry name" value="tRNA-synt_2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00980">
        <property type="entry name" value="TRNASYNTHALA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101353">
        <property type="entry name" value="Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="ThrRS/AlaRS common domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 15" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="10 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 15 16" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12 15" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 15" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 15" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="9 15" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="15">
        <location>
            <position position="633"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="637"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="749"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="753"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00048300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_03133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3999052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="994" mass="111419" checksum="F13D68686973AD7D" modified="2020-12-02" version="1">MVKLARFFIFSRFERLQFSYLSSVFYSSYRNMDSSLTGKDIRAQFLDFFVEKKGHTFVHSSSVIPHEDPTLLFANAGMNQYKSIFLGTVDPNSDFSKLKRAVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKKEAIEWAMELLVDTWKLPKERLYATYFGGYKDLPPDDDAKEIWLSVGLPPERVLPFGMKDNFWEMGDVGPCGPCTEIHFDRIGGRDASALVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPSKHVDTGMGFERTVSVIQDKRSNYDTDVFIPIFDAIREGTGVRPYTGKVGEEDKDKIDMTYRVIADHIRTLTIAISDGGRPDNTGRGYVLRRILRRAVRFVSEKLHAPPGFLASLVSVVVEVLGEAFPEITKNPQQAMNIINEEEEQFLKTLARGRRLFNRTADKHQGDKVIPGDVAWRLYDTYGFPVDLTQLMAEERNLSVDMEAYEESRLKAQEIARGKTSAGEEIITLDIHSINHLQNVLKLPRTEDSFKYKYTSDDDGNYNFDLCSGEVKALLLNKEFVSEVPGGEKCGIVLDQTCFYAEAGGQIYDQGYMTKTDDEEVEFAVMDVQVHGGYILHVGALEGKLKVGDKVKCFIDEPRRRHSMNNHTATHVLNFALRKVLGEADQRGSLVAPDRLRFDFTAKGAMNAKQIKDCEVICKDIVDKKMSVFASESSLAAAKDIQGLRAIFDEVYPDPVRVLTIGAPLNELSGDPQAGYKYSVEFCGGTHLQNTGHMKAFSLISEEAISKGIRRIVAITGPDAERAINRARLLDQHVESLKAKIAEKFNSKTLNPKEAIREITALSDEISSAIIPYCEKDDMRNKLKEVKKIADDADRARKAAMTEAALEKTKSLLENKDEKIIIETLDAAANAKILDSCLQHVKKSSAETAAMFFSVDKDQKKIICMCQVPKELIDQGLKANEWIGSVSSLLGGKGGGKEMSAQASGPHYEALHEALQLAKEFAKLKVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HXZ1</accession>
    <name>A0A6S7HXZ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tripartite motif-containing 45-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A077010</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006870">
        <property type="protein sequence ID" value="CAB4010684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HXZ1"/>
    <dbReference type="OrthoDB" id="5964090at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd19757">
        <property type="entry name" value="Bbox1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003649">
        <property type="entry name" value="Bbox_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017868">
        <property type="entry name" value="Filamin/ABP280_repeat-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047153">
        <property type="entry name" value="TRIM45/56/19-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027370">
        <property type="entry name" value="Znf-RING_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000315">
        <property type="entry name" value="Znf_B-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462">
        <property type="entry name" value="BONUS, ISOFORM C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462:SF296">
        <property type="entry name" value="MEIOTIC P26, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00630">
        <property type="entry name" value="Filamin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00643">
        <property type="entry name" value="zf-B_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13445">
        <property type="entry name" value="zf-RING_UBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00502">
        <property type="entry name" value="BBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00336">
        <property type="entry name" value="BBOX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57845">
        <property type="entry name" value="B-box zinc-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50194">
        <property type="entry name" value="FILAMIN_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50119">
        <property type="entry name" value="ZF_BBOX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4010684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="603" mass="67842" checksum="5CDEB620A5D2A450" modified="2020-12-02" version="1">MAESLRYRVEEHLTCSVCLEPFKDPKVLPCLHSYCHVCIVNLAKNANSQTINCPECRLTVEVDENTVSTLPSNFFVNNLLATMALTTDKPAAKKIVCDSCDSEDAAQSRCNECGIFLCPYCTEFHQRSRSMKHHELMTMEQLKSNPGPQNIAEKIRCPKHKDEVIKLFCKTCQTTICRDCTIVDHRQHEYGFVEEVAVEEKRHLQSNLNEVKQRKGRVAQGIVNLKKFNEGLEAKKKSTISEISQHFDQLVKAVESRRREMMERATSITNFKQKQIHAQLEVLEVALASCESSIEFTEQAFKNGNDVQILSMEKYILQSLEQLKAVKDQTEPCVTEDIVFIIPSSVQEKKKELLIGYDVGVAVANPESCTASFEETEATFNAAKQYCITLICHDKNNRRLRYGVQDIKPSFTGMEVSDVVVTDNKDSSYTISFCPRQGGMLKFEVSINGTPAPKCSLTKQVKWVISDVHGKGPITDDGRTMRGDGGYCCRVGGCYFDSGVHTWKVRLRNLLFGDPTAEVGIIDYDEINAYMAQSKRKCVHNHSVRAGPGDDISFNLDMEKRTLNVKVNSTRHGSSTNSYQFTARRVSPFFASSSSFLSISLVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I0E4</accession>
    <name>A0A6S7I0E4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013859</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006799">
        <property type="protein sequence ID" value="CAB4010477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I0E4"/>
    <dbReference type="OrthoDB" id="5976378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="557"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="557" mass="63222" checksum="4879C7AC51E6F06C" modified="2020-12-02" version="1" fragment="single">MANDVEENPGPTIYDVVDPTQTVCAGFSQGDTRKFRDSYGILHPFGKCVSISVEVPQQLKDLTQVEEMLIARALPIMRVYIKPGGQRGYSGHCINLPQNVKELATSLPRYPKELSVIIVKAKGKNDTFKDVTVRKQKVHKALLWLIQNNPYYSDLQVNEDALNLLPENGVPPDLMTVETDDDIVSDDNCSPDVGPPTDNPTEDIVYNDSTEMSSFLPVGEQQQQEIEAVRNQLTENDPMQWPSVENEPLNEYQISHLATMAFPTLFPDGKGDPTNSGILRDVPLQERVKHLLKFAEMIDGKWVYRFASHPRFSYWAFNMIQRKRIFQQSGIFLKQNPGEAHLTIDELREMAASNNANVFMSKVSRYVGNIAGTNAYWNKVREELKAIITSVGAPTLFFTFSSADMHWPELHALFKADGDIADSTSDVRRQNVINNPHIVDWFFTQRLESFVKHWLYNTLGAKWHWFRYEYQGRGSIHCHGTAKLNNDPGLCQLTQTALKGFLAQKFKDENDCSDTTELDQDIEAGKRAADTACQYVDWLLSTVSPNPPDQDMWIRPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3Z7</accession>
    <name>A0A6S7I3Z7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058438</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007097">
        <property type="protein sequence ID" value="CAB4011283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3Z7"/>
    <dbReference type="OrthoDB" id="10011386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041539">
        <property type="entry name" value="CxC5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18718">
        <property type="entry name" value="CxC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="467" mass="52580" checksum="6AFFF9C98401E21B" modified="2020-12-02" version="1">MFDLDRILATVKSNESNIDNIREHMKALHDVDLQCILMEKVKLTEEEALTLASFQAGVQGIVILKEALRHVPENITRNENGKSMRFIFVCKIFRALASNHGIASTLKDQQIELLCQFLELYCPDFVTSPGHQSIWSLTQDEGIYFNKFLTPPVTNCLGCDKLLTMHNRPSKATLFTLKGPVPCSKVILECRDCSARYGIAKFTRGNDLGSCFYPQESAIDVIEVSNVTYMGLELDGWIPSLSNHCWVSFSGFSEAYNDVNAENIQKFCEVTHGNLSVLPGKLSAKAVAKSFWYREVEKELQEIGLREKWEFADQKMGGLSGSNDHAMEYIDSNCCDSLYSHVCYANCKSKGCGNLFVADGNWKLRYAHCMWKVPIKLPEFGEINYPQICPLSPRCGHAFCEAHCKEATVQGYPTELRPFLKSCGISKEGIEQGKYDTKDLNTPIIMKAWVTVLTLPSTINIFSHIQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9X8</accession>
    <name>A0A6S7I9X8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004564">
        <property type="protein sequence ID" value="CAB4003201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9X8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12392" checksum="CEA873CD44AA48C8" modified="2020-12-02" version="1" fragment="single">APAAEEEIAEDEPAAENELVENDEETENDEDEQEDEEKRARNIVTEKLCTRNFTEKSIDTTVPNTVGAKVVVISVATMVITAASINVRDTRTQNVATIKMTTFALEGLYEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IE35</accession>
    <name>A0A6S7IE35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028444</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008813">
        <property type="protein sequence ID" value="CAB4015707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IE35"/>
    <dbReference type="OrthoDB" id="5987296at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12242" checksum="5A14586118E62A40" modified="2020-12-02" version="1">MAPPTNSKELQTFLGLATYMAPFIPNHSRHTASLRQLLKKERKFAWDASQQDVFDRIKNLISEEVTLTYFSPEKETVLQVDASTKGLGATLLQEDKPVAFASKALTDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IF34</accession>
    <name>A0A6S7IF34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010292</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008815">
        <property type="protein sequence ID" value="CAB4015713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IF34"/>
    <dbReference type="OrthoDB" id="5980032at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12623" checksum="FA5C2F33AD79205B" modified="2020-12-02" version="1" fragment="single">MSTKSSSQNPSNDTESTTAAIFEQFKVYFDQKLENLSSGFKATSESQAQKLQRQAEGANLKFPGNRNQFLFDNQVQDLLNETRSVLQKGDTDSVLKSIDNATKLITQRQRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IM29</accession>
    <name>A0A6S7IM29_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC110244569 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040405</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005618">
        <property type="protein sequence ID" value="CAB4006832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IM29"/>
    <dbReference type="OrthoDB" id="5771378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052729">
        <property type="entry name" value="Acyl/Acetyltrans_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041496">
        <property type="entry name" value="YitH/HolE_GNAT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47237">
        <property type="entry name" value="SLL0310 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47237:SF1">
        <property type="entry name" value="SLL0310 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18014">
        <property type="entry name" value="Acetyltransf_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="36098" checksum="E5A52DBA1DFFF716" modified="2020-12-02" version="1">MSGVITKTVPLIVIFTMFRTKLITNTSTYLKKYFLQARATEKLRPAIDDVDCFLECDSTALSVGELDSKPIGTCAVFKYQDGYRHGGAYFIEHNYRKYGYGAQLIIETIRKSEPITNLSAYAPLRMVETYKKFYGLQILHVCEIHDINSITALKNLQGISMDASYHVKQVSDVDFETLCNYDKFTFGYNRQPFLYKWLYSPASHSCVALNNQGFIVGYVVARELVVPNEGYKVGPLFCENINIAQVLLQSVFKQINEQGTSTSNSVHISCPVDRDLQVRQLLKILDSSHVQTIPFMANNDHLKGRIDKWFAITSFETG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IR13</accession>
    <name>A0A6S7IR13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A034750</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006020">
        <property type="protein sequence ID" value="CAB4008101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IR13"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4008101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="28949" checksum="6A3D2408CFC40FB4" modified="2020-12-02" version="1">MAHYDPAAPTQLRVDASPVGLGAILTQTQQGAVRPVAYASRTLTPVERRYSQTEREALAVVWGCEKFHLYLYGTTFDLLTDHKPLEVIYSPTSKPPARIERWGLRLQPYTFRLQYSPGATNPADMLSRLPLPNTVHRERNIAEEYVHYIARNAIPKAMTLTQLEQATARDPVLQRVHQSVVSGNWPKTKETDPYFCVKNELTATESLLLRGSRIVVQPVYNLPPYNWHTKATKGLFEQNSSCERKSGGLGSTKTLNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVZ5</accession>
    <name>A0A6S7IVZ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">CUB and sushi domain-containing 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A068982</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012558">
        <property type="protein sequence ID" value="CAB4023556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVZ5"/>
    <dbReference type="OrthoDB" id="5804959at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251:SF37">
        <property type="entry name" value="CUB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251">
        <property type="entry name" value="OVOCHYMASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="313"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="253"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="380"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="263"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="295"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4023556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="497" mass="55760" checksum="BE749CB60A8BB6A7" modified="2020-12-02" version="1">MPISMLYWTSNSWNKSSLNKVLFSTEVVKLIPDWQDRQEIVKGDVLILKAIAHYGKIQWYWNGQPIDRHFQNGSSTNVRNITRKVTKIGTEIVRDEQTLRVEGMTLYNRGIYQVLATGFHRQDSEHTEITSYGCGGIHKSQSGSLSTPNFPESYPKNIECLWIIKPYPTPNPDTLYLQIDHLDIGACKDNLQIFDGETGMLTFSNGAQLRSHLSAFRLLFKSFSCSGGNTGFNASYWISGPTTFPTTQVAEPTSLPTERETNGRTTQFTTKISTVERSQRTTIPERSQRPTSPERSTEKEGSVEESRLMSDSAIMYGVIVLICLTILVIALLLIIKRKGNFILTCIKGNNNDNRREGTERQGHELNQYPSACEIILYDTPGEKDAGQSTNETEDGPIYDVLEGPGEEQGSENPDQSTNVYASVNEVCMSEEHPTSPLGNFEVSFLEEIYTTLTADRESEDVNIYESLRRGNAGNEQCEGWSVDGMQSTDQDYVSIIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWK3</accession>
    <name>A0A6S7IWK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lactadherin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045798</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011844">
        <property type="protein sequence ID" value="CAB4022176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWK3"/>
    <dbReference type="OrthoDB" id="10067014at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="315" mass="35591" checksum="9C79D4555C67212E" modified="2020-12-02" version="1">MAASGAACSWFARVDEEEINQIIEDAIPKNTKRQTSWSIAILRDSKQILECEAKENQGMCGSSKVKHHSSIPPEDIQKCYESGIFGDDSPLSLSRMQINVEYVEMAEQEKTKNHPGGLSDKADEADPKMFSTGENHCPVQYLKTFIQVLNPVEEALFQRPKSNFSASDEIWFDVNTLENMMKEISSAAKLSQIYTNHCIRATSVTLLDRAGIPVHRIMQVSGHRNEGSVKVYAERQTLQQQKQCSEILGKQIQVTSTDPIVSPTRPSEQTYNNNKNEIRYQNSFSNTTSPKFVDFGKASFENCHFTFNYNLSKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IY93</accession>
    <name>A0A6S7IY93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Actinoporin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A055387</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nematocyst</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Target cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the actinoporin family. Sea anemone subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005530">
        <property type="protein sequence ID" value="CAB4006528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IY93"/>
    <dbReference type="OrthoDB" id="6132998at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042151">
        <property type="term" value="C:nematocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044218">
        <property type="term" value="C:other organism cell membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051715">
        <property type="term" value="P:cytolysis in another organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006812">
        <property type="term" value="P:monoatomic cation transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046931">
        <property type="term" value="P:pore complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.270.20">
        <property type="entry name" value="Cytolysin/lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050677">
        <property type="entry name" value="Actinoporin_PFT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009104">
        <property type="entry name" value="Anemon_actinoporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015926">
        <property type="entry name" value="Cytolysin/lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40388">
        <property type="entry name" value="BRYOPORIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40388:SF1">
        <property type="entry name" value="BRYOPORIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06369">
        <property type="entry name" value="Anemone_cytotox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63724">
        <property type="entry name" value="Cytolysin/lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0204">Cytolysis</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0166">Nematocyst</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1052">Target cell membrane</keyword>
    <keyword evidence="8" id="KW-1053">Target membrane</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="24"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="40"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="60"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4006528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="30373" checksum="C7291E717D97FF35" modified="2020-12-02" version="1" fragment="single">MPPKGSKSSKRKSSKSPANPSPSQRPRVQTRSSTMVLEPTIASPSAGATTSSTVREPVSVASTSTAPDASTISPQLRQQIVLTVTAEVTQRLTPHHQAEFSDAVVEAPVVAMGATTSTEQPAIVPGIVEEQSAVAGEGKSKRGLAAAIPIIELGLNVLTKVLDTLGNIKRKIAIGIGNDTPFAWKADGVYFSSGTSDDILPACLSSKEAAVFPARKTSGPVATGAVGVLCYYIPDKKKSLCVLFSVPFDYNLYSNWWDVKVFSVKKSPNHQLYVDMYYGNPYKGDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J590</accession>
    <name>A0A6S7J590_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013419">
        <property type="protein sequence ID" value="CAB4025111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J590"/>
    <dbReference type="OrthoDB" id="6426224at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="21068" checksum="F00F0F7F36831BD6" modified="2020-12-02" version="1">MNKVEQHQSDEELAYNLFSFKDKDKTPPYREKMTVNGIDINMEIDTGASFSGITEVVVEYNNQVSRLPLLVLKGNGPNLIGRNWLENICLNWTSIKRLAKPNLEEVLNKYDDLFTDELGKLNGVTAKIYVDPSTKPIFCKARSVPYTMKPKIEKELERLERQGTIETVQYSDWATPVVPIMKPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCK8</accession>
    <name>A0A6S7JCK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-type tyrosine- phosphatase delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069876</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015021">
        <property type="protein sequence ID" value="CAB4027794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCK8"/>
    <dbReference type="OrthoDB" id="10560522at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050713">
        <property type="entry name" value="RTP_Phos/Ushers"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957:SF3">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="448" mass="50130" checksum="E747F4F98D3A4D6B" modified="2020-12-02" version="1">MSVVQNECDGRTNCFFNVNDGVFLPSNSSCLKNTILLVRYRCKSNIPAAPNILYIKVRSQHELLVVWSFNNNNGDRTKFQICWNKTAGGTDRDCHQGFYFKPTVISTTIPGLQSATKYTITVVRYTSDGATPSRKGQKVAITRSAPLQLQVRGIRSATSFQVKLGALQSADDMYVQIIVSKLRNNTKPTEHPGNDLIPYNENTVDNQPYIAAQIDGTNINQNSVFTVGDDKEYAPSGTRKRKRRSTNYQNVQLEPETYYSVFQRTFKSADLYYDSDWMDVIKTDELPTKASSTPLTNVSVVTTEGTAITQPGGGPDDEKQSGGCSEGRSAGTEDGEKYLVGIIVLIILVIILLVALAYFIYQIRRLKSSKANLENKCKDRNNSKEIDENLDNDDANYDHANYEEVENEESTYTALKRPGPGEEENDVHLYAHLNEVHKDYVNQAETGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGC6</accession>
    <name>A0A6S7JGC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057812</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006909">
        <property type="protein sequence ID" value="CAB4010798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGC6"/>
    <dbReference type="OrthoDB" id="5968369at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="20108" checksum="56CD1C619B059C18" modified="2020-12-02" version="1">MSERANTPKKTVNKGRRQKPLSVNDFCRLCKCPLKLKFGNFEKTSYVSSEQLFKPPYRKDCSEKTLCELLTELNIFVERKAELSERVCKSCGRKIRNANGLFAWIISLVNVPNFDDENSGREQRVLALNAVRKQKNNRNLQLKERQAPKNQEQRKVMPTKIMKKIIALPGYNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JY54</accession>
    <name>A0A6S7JY54_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008989</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023582">
        <property type="protein sequence ID" value="CAB4037896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10063139at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1302"/>
            <end position="1359"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1308"/>
            <end position="1323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1359" mass="154703" checksum="05EC3B01B49F6DD9" modified="2020-12-02" version="1">MATSSTAATATKGPKLKVLPFDPHGDRLDLGKRWEKWFERFERDLKYNGCDPSKTPEIAKMALLIYAGTEVEDLHDTLPEPGRPEGTEEENWTAYEQSKTKLKIHFSPKQCNDFAIFELLRMKIESSESITSYAMRLRKAASKCDFTNWSAEKMIKSLIISNMQDDTLRLKFLQKDRTLDQILDIARKKEDAVARSKVIDRDSRQVVNKVGAKRNQPLQQKETTDQCNRCGHENHFSASECPAISRICNYCKKKGHYASKCFKKQKEAGIKRIEAEPQTDTGTDTNSDTDEYDTAKIELVNNLGMREKPSLMRVRTNDQDILWQPDTGTQKDVWDEAHFRSFKEKTRGEVKLTPTNIKLFAYGGKTPLAVIGSFKAVLTAGDRTVDTEIYVTSEPSAYPLLSEQSAKQLQLIRYNEKFLVKRVSEPCKKVLAMTRRQKIADMIMDNPEVFTGKIGKAKTNEVSLMIDDSVTPVVQKQRRIPVNLSERAESKIQDLLDQDIIEPVPDNQPRSWVSPPVIAPKPDSNDIRFCIDMRMANKAIQRPYTQIPTMADIVNKFQGAERFTKLDLKEAYHQFVLDEQSRNITTFYGPDGLYRYKRLNYGTKSAQDILQLEMHKMLSGIPSQVNIADDILIGGSVEEHDAALQKVLSALTSNGITVNPDKCVFDVEEVRFVGLVFNKQGIKPDPKNVKNLQDASQPTSKVELRSFLGMAGFSERFIPNFASIVHPLRQQLKENIWAWDEKCQEAFTKLQASLSEFSLLHHYVIGHDTELVVDASITGLGAVLVQRASKTEAFHPVMYKSRSLKEVETRYSATEREALAVRWACRKLRKYLLGAPKFRIVTDHRPLTYMFHKLCGELPPRVENFVMDVQEFEYEIVYRPGKTCIADYMSRHHVDRAGSSRVFEIEAAAESVVESGCCHALNEQGTVTVEDIRAEGERCEVYQRLVKAIKSGISDNDEDLKPYMVPEIKHDLSVVNGVVCRGSRVVVPIALQKRVVELSHRAHQGISKAKRFLRTFCWFPGMDKAVENQVRGCLPCQAVQPPNNDQPIKPSELPIGPWQYVEMDFQGPYPNGEYIFIMIDRYSRWPEMAWFRNAPNANTTIAAMEKIFTNKGVPAVCQSDNGSPFQSKEMEQFAQSSGYRHHHITPEWPRANGTVERFNRSMKEALQAATLEGKPLRDASQRFLQMYRSTPHSATGVSPHAALHGGREMRTVLPLMTPTDHVIDRIRDQRYKAKMRNGLRPHKLRVGDSVIVKQTKVNKLTPTFNPTPLRITEVQGSRITAREINGTWTITRDASYFRKIASDTRAENEDDQDASDESDGETENENRGNQQETPDESTEKGQRPRRTTRRPSYLEDYET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYL4</accession>
    <name>A0A6S7JYL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Coadhesin-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A060276</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008430">
        <property type="protein sequence ID" value="CAB4014748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYL4"/>
    <dbReference type="OrthoDB" id="5917978at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00108">
        <property type="entry name" value="KR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000001">
        <property type="entry name" value="semaphorin-5A isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.2000.10">
        <property type="entry name" value="Frizzled cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.20.10">
        <property type="entry name" value="Plasminogen Kringle 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052065">
        <property type="entry name" value="Compl_asym_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020067">
        <property type="entry name" value="Frizzled_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036790">
        <property type="entry name" value="Frizzled_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000001">
        <property type="entry name" value="Kringle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013806">
        <property type="entry name" value="Kringle-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018056">
        <property type="entry name" value="Kringle_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038178">
        <property type="entry name" value="Kringle_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22906">
        <property type="entry name" value="PROPERDIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22906:SF21">
        <property type="entry name" value="SEMA DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00051">
        <property type="entry name" value="Kringle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00090">
        <property type="entry name" value="TSP_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00018">
        <property type="entry name" value="KRINGLE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00130">
        <property type="entry name" value="KR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00209">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57440">
        <property type="entry name" value="Kringle-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50038">
        <property type="entry name" value="FZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00021">
        <property type="entry name" value="KRINGLE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50070">
        <property type="entry name" value="KRINGLE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3 8" id="KW-0420">Kringle</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="195"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="8">
        <location>
            <begin position="216"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="641"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4014748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="641" mass="72311" checksum="962ADF404FDDC2F3" modified="2020-12-02" version="1" fragment="single">EHHLQAKNRTCLPAEAEPTLNSSSCYPLVNFTLPACENVGITLPNYVYQTPDFQNNRNDRANMDYDTWDVKIGASKISRFLKVDISTVRKCGQAFAILYCHLYFPSCDRTQSVFKEQKICHESCLHLTRMCGELWEMFVKSYTIRHPKAEETKLLRCELQPTRNAGDSPECWYFSGDTKSTDAFPAPELATNADCLFLNGSSYHGNISVTASGIPCQSWTEQCLHRHTMNETYPELNNAQNYCRNPKNSGQRPWCFTTDRNKRWEYCDIPRCIPVDGSYGNWSLNITCNVTCGEGFGTWTRECNNPQPKYGGINCSHLGEHVQYRPCSAKPCPVNGDYSNWTLSISCNVSCGDGVEIWRRFCNRPEPKYGGENCRELGSSSEFRNCTQKPCPIDGNYGNWTTSPCSATCGQGVEIRARQCDNPSGKYGGNCSKQGPPQQIRSCEIKPCPVHFDSQMIGITVVAVVSVIILTVACLILILRRRRRKAGPTYYASSLDILPPRSHCLEQLEGNNISAEYQNQTSEGEPAPGFSRGVVRYRKDYMNTGPARHSWYDRLQLIRPLATEWFQNAWGNVDEFGRHVYDVMQRVRHVFVPYNKLGNLLQGDLVGSGVGRSNNTYRTMERPAAVILPNESGNESTIENV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K011</accession>
    <name>A0A6S7K011_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032342</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021396">
        <property type="protein sequence ID" value="CAB4035814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K011"/>
    <dbReference type="OrthoDB" id="10027388at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="10408" checksum="C913D1D6610DC008" modified="2020-12-02" version="1">MERNDLLPTLLLTTQNASSIGEPIDYGVCREMLEKSIGNTCITYWNLALLAPNVIFLIFLAYHIGLFYRMFQRHNFPMVKTLLILVNFVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K3L4</accession>
    <name>A0A6S7K3L4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058764</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023696">
        <property type="protein sequence ID" value="CAB4038001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K3L4"/>
    <dbReference type="OrthoDB" id="1607513at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="15856" checksum="DDDF427B7DBC7E0E" modified="2020-12-02" version="1">MDFSPLSSYQKDSIKQLLKTAVKLGAKYVEYDLHDHTTANIGTFYLENVPDAPFRLVATDNTNTMQAVFWYLPKDDQIGCIAHISSLIVKVCVTSEDAIEVKTNIEAAKRLVGRVKRTDLQSRLTKLLNKQFPCVSIHIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIX1</accession>
    <name>A0A6S7KIX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039451">
        <property type="protein sequence ID" value="CAB4045435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIX1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21313" checksum="FD9646BBE1BCA24F" modified="2020-12-02" version="1" fragment="single">MKSKLESTEENYKNVKKMLGETSKSEKSAIRPENVKDVDSCFRKETLKTETRSDDSRIQSQRQRKDLAQNCDWKAKISSDELSSASSSETQTRKAREVNENGRSETGILRRDRKTENSPVVIREENMDKASLQKWIRDTNRTIHDMQRCLVDVKGVLFGLPGKFENILKIHYGEGVKDLSETKQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJG8</accession>
    <name>A0A6S7KJG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061909</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020044673">
        <property type="protein sequence ID" value="CAB4046026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJG8"/>
    <dbReference type="OrthoDB" id="5980364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="13738" checksum="B8ABEB301E559E50" modified="2020-12-02" version="1" fragment="single">MSAVLNGLLNSTVGLLCTKLRDYTANRLLEGDINNDQLRQIVVREIDDIKTKLEGLSRKDLLASLSFFKEGVTRLYSSFEIYGKASDRPRFSKAYATAGVSEVESVVKTKAGQLSALQTQAEYGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KTI7</accession>
    <name>A0A6S7KTI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">5-hydroxytryptamine receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A043783</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017483">
        <property type="protein sequence ID" value="CAB4031263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KTI7"/>
    <dbReference type="OrthoDB" id="5976143at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14967">
        <property type="entry name" value="7tmA_amine_R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24248">
        <property type="entry name" value="ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24248:SF72">
        <property type="entry name" value="G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4031263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="364" mass="41419" checksum="CD2D658FCC1244F9" modified="2020-12-02" version="1">MSSYDTSAMYNQTNQTGTWANSDWIKYLEFREQLSLAKTITIAFSAILTILGNTLVLVATWRDRSLHQPNKYFIACLAVADLLVGMVVAPLNAYQHFKPARTMSIHLCRFAVWADTFALTASIYSLTFISFDRYLKISKPLKYKSRMTTSTSLKVIFIIWLISTGISTYAATPQSGSNGILTTAFGFCTADRNKRKAFYTFVEVSAFFLPTVVILAMYALIFLVVRKRQKMLRNGELGQSCGVPNQRCAFLRDLKAIRMLLVVVGVFILCWSPFFIFNVLHLYFPNIVDWRSRSLNYLCSISITAAVITLLPLLNSLCNPIIYACLDNIYREAFKNLFQRLMCRTSSRTRPTPLGIELRPPRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KYA8</accession>
    <name>A0A6S7KYA8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064467</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018638">
        <property type="protein sequence ID" value="CAB4032723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KYA8"/>
    <dbReference type="OrthoDB" id="7312725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="17287" checksum="20BC2F17E147E41B" modified="2020-12-02" version="1">MMMRNAITASKNANCVDFTGCNSIIPLFHVRKQKAPPTNNENQEESTSDEINAMCEQLDRSGHSEFTSNVLFYIAGYIVSKLMENLPCSACKRSLFALPKQTPVNGHDYTSSLYHEAGKASSFTRFVNQGGLQIPSTSVFRTIEYSEHVVKIINK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L8B7</accession>
    <name>A0A6S7L8B7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077124</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015672">
        <property type="protein sequence ID" value="CAB4028719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L8B7"/>
    <dbReference type="OrthoDB" id="5984844at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9856" checksum="86F589C66870572F" modified="2020-12-02" version="1" fragment="single">CCCPAGIGGRCKHVAATLFQLLDYVELGLSDIPDDKTCTQEIHKWHVPKKSTKHKALLFEDLIFPQDTYEKDKKGRKRAVVEGKRDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5X9</accession>
    <name>A0A7D9D5X9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Max</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A009024</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MAX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000024">
        <property type="protein sequence ID" value="CAB3976991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5X9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090575">
        <property type="term" value="C:RNA polymerase II transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.280.10">
        <property type="entry name" value="Helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011598">
        <property type="entry name" value="bHLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036638">
        <property type="entry name" value="HLH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10328:SF3">
        <property type="entry name" value="PROTEIN MAX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10328">
        <property type="entry name" value="PROTEIN MAX MYC-ASSOCIATED FACTOR X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00010">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00353">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47459">
        <property type="entry name" value="HLH, helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50888">
        <property type="entry name" value="BHLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0010">Activator</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3976991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18741" checksum="E074FB15B0D74005" modified="2020-12-02" version="1">MENTESETRFWGRRERSKHNAMERKRRLIIKKQVKKLEECLPNIKPVKGRRFSRILIVQKAISHINEMSEANSSLHEENLLLAHENTVLQRQMNELIEQRKQTGEVSSETEEIEDSILGSSDSDETSSLFNEAVNFEEGITGFMMDNITQSEFWSLGQELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D688</accession>
    <name>A0A7D9D688_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein LOC110240864</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022348</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000014">
        <property type="protein sequence ID" value="CAB3976805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D688"/>
    <dbReference type="OrthoDB" id="5953823at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007560">
        <property type="entry name" value="Restrct_endonuc_IV_Mrr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04471">
        <property type="entry name" value="Mrr_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Restriction endonuclease type IV Mrr" evidence="1">
        <location>
            <begin position="181"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="356" mass="40046" checksum="4E742F9953BEF2A8" modified="2020-12-02" version="1">MAEPVEKKPRRTRTIELDLERSPEWPKWVEDAEDSALLELFEIGVKVKGSFAINITENSEYIEKILGEKLNPVYQQINAMSTQFVKVQNGVTTSLTNMQSGVMAMNTKLVGEVQEVARKVPPLDSLNSKINEVLRPVQRCDDNLIKLVNKYENPAIKGALGEAEVLTILRDHFPNYTIRSVAGQGRKADIEITSAQSSQKYLVEVKDHERAVPAKEIEKFKKNVSDNKVKVGILFSLRSGISVHASHGRFTIKFEDNQYYIYVPNALKERKDLIVWIVVLADQLAVLNQGLTDTQTKVVTNLLTEFQQSMDRSKNCKTHLEALKGSVAALEENMEPLLKVIQNAKTKLNSALNKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D6V2</accession>
    <name>A0A7D9D6V2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Probable serine threonine- kinase pats1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085534</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000113">
        <property type="protein sequence ID" value="CAB3978440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D6V2"/>
    <dbReference type="OrthoDB" id="10252328at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47508:SF1">
        <property type="entry name" value="NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47508">
        <property type="entry name" value="SAM DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13676">
        <property type="entry name" value="TIR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TIR" evidence="1">
        <location>
            <begin position="324"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="domain" description="TIR" evidence="1">
        <location>
            <begin position="493"/>
            <end position="597"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="790" mass="88868" checksum="7268FA59F642B6FE" modified="2020-12-02" version="1">MGHSVSKGRRAAQNDSLVRDVTYLREQISKHEKAYEELQLEHEQLKDKVNKQDQEFEKVKEENMHLKKALSLASVTLESEVVSQAEIKPKIDETSDTDSGVNVEQSRHLKVGDKVLSLHKSWSYYTATIDSFDVKTLMYTVNWDDGDRSGRVQKYFNVALNRTPGEDEIGMGTLVLFPQGQYAGTEGNNSGGIRYHQGRITRVYKGRIGKKLYDGVHTKGVNDGKWVTFQGYSYEFKGLMRKDLRVSPNILDILNAQGMHMDSSSEMGHEVATPDNDESAYDVFISYSKLNSNLALENGEVGAGALGKSVEEQKALNGQSCDPRWIKQQLVKQGLRVWMDESRQPIELNKVVNVMKRCQIIISCISNEYANSDNTRMELQFAKKTIKKSILPIVVGGGEWEWQLTVVGLLIAGELYIDFTDSSKATAKMEQLVEALAKYVHVQERSFQESPTKSIVTTKAPEVFISYCWTNSMTAYEAKEVKQYVGNGYNDPRRIYADLAKRNINGWIDIHQLTSAAAESIGMFEVIAKGLSSAKLVLVFVSDEYSESDNCRMEFQFALKSLKKKVVPIIVGTGDKWSNTIIGMLVSGCDVGTIDMREIEEGGYERKLEEVIQYCSVVQDASYQTPGKERTYRAPTIGDKVISHHFKWSYFPATIVAFDKTTFEYTVDWDDGDPSGRHECYKNVALNSVPRSDEIAVGTIVFFPQGSYSGSEGNNTGGVRYHQGKVTKVHKNISGETLYDGQHTKGESDGKWITYKGYNYQFSGMRLRDLRIAPNAMDAMMAIERQAEQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAS2</accession>
    <name>A0A7D9DAS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011029</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000349">
        <property type="protein sequence ID" value="CAB3981072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAS2"/>
    <dbReference type="OrthoDB" id="6003429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="29330" checksum="111A20ECA8825AC5" modified="2020-12-02" version="1">MASGGCVQNSSAQIDKDFTNKWDLIISGNIVYDKKRLYWWNSYELLKKLVDSAFVQRGKWWTPGGKARRFDSKDISGEEILNSAHSAAWEISTHSLGSEISERSSQVRSNSPHCSKVMKRDCDCQCGLLAAELEGIKLDLVIMQRNVESKTNVVNNDEVTKLKQDLHSERQKSKQLEAENKRLEADVAILVRGRNNEVNDLNNIIVSLENKVKSIEVLNDLLKTTVSEQSTMHCQNNHNVKAELGKLNQQDYNYVNPHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DG51</accession>
    <name>A0A7D9DG51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Mitochondrial import receptor subunit TOM20 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A055809</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion outer membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Tom20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000734">
        <property type="protein sequence ID" value="CAB3984398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DG51"/>
    <dbReference type="OrthoDB" id="2154253at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005742">
        <property type="term" value="C:mitochondrial outer membrane translocase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030943">
        <property type="term" value="F:mitochondrion targeting sequence binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030150">
        <property type="term" value="P:protein import into mitochondrial matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016031">
        <property type="term" value="P:tRNA import into mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.960.10">
        <property type="entry name" value="Mitochondrial outer membrane translocase complex, subunit Tom20 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002056">
        <property type="entry name" value="MAS20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022422">
        <property type="entry name" value="MAS20_rcpt_metazoan"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023392">
        <property type="entry name" value="Tom20_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12430">
        <property type="entry name" value="MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12430:SF0">
        <property type="entry name" value="TRANSLOCASE OF OUTER MITOCHONDRIAL MEMBRANE 20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02064">
        <property type="entry name" value="MAS20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01989">
        <property type="entry name" value="EUOM20RECPTR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00351">
        <property type="entry name" value="OM20RECEPTOR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47157">
        <property type="entry name" value="Mitochondrial import receptor subunit Tom20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="5" id="KW-1000">Mitochondrion outer membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3984398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="10226" checksum="14C0DB9C94C2E330" modified="2020-12-02" version="1">MPDRSDQAALQKFFFDEIQKGEELLAAGEFEASVKHLTNAIAISGQPQQLLQVFQQTLPPDVFKMLMNSLALAAKSPTTTAPNTSMDTLGDTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DM29</accession>
    <name>A0A7D9DM29_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082146</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001447">
        <property type="protein sequence ID" value="CAB3989231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DM29"/>
    <dbReference type="OrthoDB" id="5985737at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="301"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="422"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3989231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="545" mass="63040" checksum="E3E9C161FA7B5104" modified="2020-12-02" version="1">MFSDGSDQAYGTCAYVRWQLENGTFGANLLAAKSRVTPIRKTTIVRTELNGALLSKRLSAFIKKESRFIFEKEYFFVDSEIVRAMIQKDSYGFNTYAAVRIGEIQEGTSPSDWHWIEGKLNIADWITRGKNPSELDKNSLWQTGPDFLHLHESEWPIKKFVLPDHLPEETKAAMIIKVESRIILSHAIDILRFSCYYRLLRVTARIAAIGKKTPKPSLKNLAAPVEAECVQNAELLWIKEAQKSLQQRFEKGKFNRLSARKRKDRIIVVGGRIPKSSESSYDEQELILMPSDYRVSRLYAERVHSRGHNGVSTTMSKIRTRFWILKLRKMARAIREQCVICRKKQKILESQVMGTLPKERVFVERKTVCFEAANLVNERPIGIHPTSPSDDTYLSPNHLLLGRASVRIPSGPFKETKNERLRFEFVQRLVNAFWKRWIRDYFPSLLIRQKWHVDKLNVCVGDVVMIQDSNSIRGQWKVGRVSKALVEDDGRVRRVEVQYKCLPTKETKVYKGQAYTTIERPVQRLVVIPWFAIICCPECFDQISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSX4</accession>
    <name>A0A7D9DSX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell division cycle 123 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A067211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDC123 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001955">
        <property type="protein sequence ID" value="CAB3991981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSX4"/>
    <dbReference type="OrthoDB" id="360540at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009772">
        <property type="entry name" value="CDC123"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15323:SF6">
        <property type="entry name" value="CELL DIVISION CYCLE PROTEIN 123 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15323">
        <property type="entry name" value="D123 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07065">
        <property type="entry name" value="D123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="37998" checksum="F1C7DD6FB98633BE" modified="2020-12-02" version="1">MKQKHVLNCQLPTWYNGFKNCSIRSKIIPLQAEFIDYLNQDGVVLPGNENEEGIQCDSDSESEDWTAADDCNTATATAPDFTELTKKIEDAIKDLGGEAFPKLNWSAPRDAAWISYNGTLKCTTASDVYLLLNSSDRVSHDINHPFRKCEDGEDNTLMESSGFVLVLRKWQEISSSTEFRCFVKKGHIIAISQRDTASHYPYIAQNYDEIHSRIKEFFQKKICGKFPDNSYVFDIYLKSSQVIKLVDFNPFGNITDPLLFTWDELSKVEPDEQAESVETMFRFVTSNTGVQPSPFLSSRIPRESLNLVSSDDINKMVDFLKTTELIGESQATNNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DVJ1</accession>
    <name>A0A7D9DVJ1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Complex I assembly factor TIMMDC1, mitochondrial</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Translocase of inner mitochondrial membrane domain-containing protein 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A078894</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Tim17/Tim22/Tim23 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002034">
        <property type="protein sequence ID" value="CAB3992366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DVJ1"/>
    <dbReference type="OrthoDB" id="5826189at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032981">
        <property type="term" value="P:mitochondrial respiratory chain complex I assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055299">
        <property type="entry name" value="TIMMDC1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13002">
        <property type="entry name" value="C3ORF1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13002:SF1">
        <property type="entry name" value="COMPLEX I ASSEMBLY FACTOR TIMMDC1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02466">
        <property type="entry name" value="Tim17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00040778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00041344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3992366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19256" checksum="D8BD3E574F584D21" modified="2020-12-02" version="1" fragment="single">MSDLVIDDGKPNTFWDRVKWAFSKNEYGEIRPEIAHIPVVVFCGSLVGMMVGGRHGTRIRGASNIASNQLTVYTSSAQAERDHFSAILLGFFQYGCRWGWRAGLYSGIYSTTLTAVSIGRDKEDALNYIAAGATTGTVYKLFSGFRGILVGALFGAGICTPIGLTMQALGHFIPYEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DWK3</accession>
    <name>A0A7D9DWK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002576">
        <property type="protein sequence ID" value="CAB3994984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DWK3"/>
    <dbReference type="OrthoDB" id="545910at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14970" checksum="3B298F3D009C7A8A" modified="2020-12-02" version="1">MYEKAITAWRCTEQPHPQCDEHHKLAKMCVVKDLMKVNYGRPFFVCGEKTKPCSFWMWGDVQPLAKPECRHGLPCVVCKMKKEGLNKDRLFFSCPNDKESSCRFFEWAPDEQLRFFQSVNLSLFSNGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EAA8</accession>
    <name>A0A7D9EAA8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">QRICH1-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A021866</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004637">
        <property type="protein sequence ID" value="CAB4003470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EAA8"/>
    <dbReference type="OrthoDB" id="5988622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="QRICH1-like" evidence="2">
        <location>
            <begin position="33"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15741" checksum="FE2F86B979EB3187" modified="2020-12-02" version="1">MPPKRRFRPPKSEQEEKQILEECIPPKSTRSSTKWAFKVFSEWQVARVNKNPRIEERSFKIDIDKVQTLDTNIANMSVETLNFWLTKFVQEVPMQGQRRELSGESLYMIAAGLQRHLGESGNAIRLLNQDEEGYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEY7</accession>
    <name>A0A7D9EEY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057544</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005975">
        <property type="protein sequence ID" value="CAB4007969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEY7"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776:SF4">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="34435" checksum="C0DDD8D500C9A44D" modified="2020-12-02" version="1" fragment="single">PQVSQTDNILFYPENKVSTCNGRNLYTLSTYVEIFSHQQLNLGLIYKKMCMLVRQTRTHIILTLYFEMLPVLNSSTLQKTVNLPGYNFLSCHRTASKNIVVGVVYRSPNQNLSLFLDKFNEILSTISKNNKHCYIMGDYNIDMYCLNVHSATNEFVENLFFQYVLAFNKYADAHHSTFETPPPRKSAEKTIFRDFSDSNISKFRSHLTNVNWENLPNQDADSAFDAFQYEFSRLYDLSFPSKSVRAKNSNKPLTPWMTRGLLTCVRKKNKLYKKTKTSLPSSFISNNTLLSDPKDIAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EF31</accession>
    <name>A0A7D9EF31_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086017</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006166">
        <property type="protein sequence ID" value="CAB4008586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EF31"/>
    <dbReference type="OrthoDB" id="5983224at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="140"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="23053" checksum="C889B21271D34DF3" modified="2020-12-02" version="1" fragment="single">MSEQSDILDKFDLNKFVKTISLSSDLCLSFAKKDSVNTHDIALTIDISNEHLRSWYDLTQNGSLSKYSFVEILNAFISKHGVQLHESERINNILRKRGGDAKNKCRSLNGRLRTEYLAKVKHITVFKHEVINAAETQQLLTENNEYVKSLSEENRKLKERCEELWAAIEDLKFSKTATEQKLDSKQEDYELVLEQNKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EG58</accession>
    <name>A0A7D9EG58_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">26S proteasome non-ATPase regulatory subunit 10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A045499</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005834">
        <property type="protein sequence ID" value="CAB4007556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EG58"/>
    <dbReference type="OrthoDB" id="10257076at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070531">
        <property type="term" value="C:BRCA1-A complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031436">
        <property type="term" value="C:BRCA1-BARD1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0085020">
        <property type="term" value="P:protein K6-linked ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171:SF9">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24171">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="3" id="KW-0647">Proteasome</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4007556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="24806" checksum="652CCC8BA5F7C880" modified="2020-12-02" version="1">MSVSDLDICNLAFEGNLVKLKERIEERKDLIRTKDQSGRVALHWAASAGYVDVVKYLLQQGAQVDARDEMEWTPLIISVSAGMEDVVRLLIGCGADVNATNKTGQSPLHYAASKNRLQFAEVLIEHGAEVNTFDKTSKATPLHRAASRGHSKMVTILLKQKADPNSVEIEGNTPLHMACEEDRTQVAQILVENQADITLLNKEKKTALDLASKQLANYLRRLTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EM45</accession>
    <name>A0A7D9EM45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009138</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006831">
        <property type="protein sequence ID" value="CAB4010566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EM45"/>
    <dbReference type="OrthoDB" id="5990125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="865" mass="99022" checksum="2BD4D4636A24EABB" modified="2020-12-02" version="1">MAKWFLILAVSFWLLKRSKTALPHRNNTSMPGNIVISSKLTSIPDRLSYIWTSTRDVVLRKCAMSSKYRYGLEFKIKKNNLHLFLLILLSGDVATNPGPGTSTEHTSNELNAIYLNARSLKAFVPFNDDSSAKVCKITLLKELVHSGSYDIICICETWLNDSIISSELLPGYSVFRRDRVEKVGGGVLVAVKVNLHATRRPDLERNEIELVVVELNNTNSKPVILYTFYRPPVSGPEVFHHLSSSLQNTSESSCIVLVGDFNLPALDWTTFDEQIPTTAGGQLENSFCDLFDDNFLQQFILGPTHNCGNKLDLLSNCPEIITNVETSTPEQCKFPTDHYIVEFQIKLKFKRARNVKRRIYNYKMANFEGLRSCLSNVPFENAFSDDIVQYWSNWKDLFLTAVNKFVPVKTIKDINSPQWIDGEVRQLVRKKYAALKKFRQNRSIIRKQKLRCISQNIKSLIRKKHREYLERVECSFNKNPKFFWSYHQAILHHKEQHNAVVTYKDITAKTPAEKAELFNSYFSSVFVPSKSTTDTDNNLDSFDPDTQISDITLTTEEVAARFYDHVIHLITPSQHGFLRNRSCITQLVQVLHSVGQYLDKNLQSDIIYLDFAKAFDSVDHQILLRKLKSYGVTGRLLDWFRDYLSGRTQRVFVEGVPSSWVPVISGVPQGSILGPILFAVFINDLPEVISNGSSEAMYADDTKLFRNINSTTDGDCLQESLSNLDTWSHDNNIKFNALKCKVLSVTRKKYPVTYNYHLGSSSLLRVRKEKDLGIIVTDNLLWNSHIQMITAKANKMLGLLKRTCPLLTETKIRRSLYLSLVKSKLCYGTEIWSPSNVSLKVKIERIQRRATRWILRSRIVMIVLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EMN6</accession>
    <name>A0A7D9EMN6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like GTP-binding insertion domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047902</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007567">
        <property type="protein sequence ID" value="CAB4012586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EMN6"/>
    <dbReference type="OrthoDB" id="5972980at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="1">
        <location>
            <begin position="10"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="24651" checksum="5FBE942C3A67E977" modified="2020-12-02" version="1">MDHIVLTPYSKMKVKLATQVLSKSVMIALQESGKEDVQETARFCGMINDFFDCTNVRSLTEHIRKRNTLIKPYTSADDERLSWLLNVFLEYLNSWKNNIATRPGTFSADERGKMFLSPQTYEGFKISVYSHVEAIQFLLEKGFQYVLTEQFMQDVLEDYFVHQRSKGARSDNPTAQQFGYNDLTIASQRDIAPIIRGNVGGRYEKTKWYKVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8Q7</accession>
    <name>A0A7D9H8Q7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Density-regulated protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A020042</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the DENR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000112">
        <property type="protein sequence ID" value="CAB3978429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8Q7"/>
    <dbReference type="OrthoDB" id="277199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001731">
        <property type="term" value="P:formation of translation preinitiation complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002188">
        <property type="term" value="P:translation reinitiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11607">
        <property type="entry name" value="DENR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.780.10:FF:000004">
        <property type="entry name" value="density-regulated protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.780.10">
        <property type="entry name" value="SUI1-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050318">
        <property type="entry name" value="DENR/SUI1_TIF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046447">
        <property type="entry name" value="DENR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005873">
        <property type="entry name" value="DENR_eukaryotes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048517">
        <property type="entry name" value="DENR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001950">
        <property type="entry name" value="SUI1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036877">
        <property type="entry name" value="SUI1_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01159">
        <property type="entry name" value="DRP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12789:SF0">
        <property type="entry name" value="DENSITY-REGULATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12789">
        <property type="entry name" value="DENSITY-REGULATED PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21023">
        <property type="entry name" value="DENR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01253">
        <property type="entry name" value="SUI1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55159">
        <property type="entry name" value="eIF1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50296">
        <property type="entry name" value="SUI1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="69"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3978429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="19241" checksum="CC90CDF50B3C03FA" modified="2020-12-02" version="1">MADDEELSYPLEIIYCGVCTLPSEYCEYSPSYDQCKEWWKDNHPDEYEDMIAQVAQGLEALDVAGAKKRQTRGGKGVVKTKKKPSTGPKKITVSLSQRSKKKYVTVVTGLKTFEIDIKKATKSFGQKFACGTSITGDDEIIIQGDVKDDVIDFIQEKWPEVDSGSIADLGTKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HC22</accession>
    <name>A0A7D9HC22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Plasma kallikrein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A034636</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000027">
        <property type="protein sequence ID" value="CAB3977040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HC22"/>
    <dbReference type="OrthoDB" id="5974294at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00190">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.10:FF:000003">
        <property type="entry name" value="Transmembrane serine protease 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.180.10">
        <property type="entry name" value="Catalase core domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033116">
        <property type="entry name" value="TRYPSIN_SER"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24252">
        <property type="entry name" value="ACROSIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24252:SF7">
        <property type="entry name" value="HYALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01477">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00308">
        <property type="entry name" value="LH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00135">
        <property type="entry name" value="TRYPSIN_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0720">Serine protease</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3977040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="355" mass="38931" checksum="88FD0B598BCA9C44" modified="2020-12-02" version="1">MYSLTWFCFLVVVALSNAIKYKISVETGTNSYAGTDANVFITLYGYSGSSSLIPLSSDKDIFEKGDVDVFVVDIPDVGPVTRIRVQHDNSGFFGAGWYLKEVEVKYDGESAGSVFDCNTWISRSSGLVKTFLAENACGLTMTASSRIRRSLGCGGSIIDNQWIVSAAHCFHDDRNVNNYKITVGEHDLRYKSEYEQVISIEKLVIHSSYDADSQDNDIALLKLKTPIQYNARALPVCLPSSDLPSGTDCWITGWGALQEEGYSPAILQQAKVPLVSKQACGYVYGSLTTSMRCAGYHTGKIDSCQGDSGGPLVCRVNKRWHLMGAVSWGIGCARKGYYGVYADIVHLKSWITNVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HG65</accession>
    <name>A0A7D9HG65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015818</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000241">
        <property type="protein sequence ID" value="CAB3979908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HG65"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="244"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="248"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="336" mass="38564" checksum="1695AE68D78867A7" modified="2020-12-02" version="1">MQQRKKISYPYEEGLQKLADALAYLQSITKERKQYLCASPVGPEGTIYHVYLAETVKALETHKQALSKVELQEAMKDINLCVLVNEFRKEHGFAKHKQTGQYRHEDALFQNENEQIEQRYPDFQEQMNALQIRRGETTTAVDRRMEGNKYAFVPGDIVAINRGVNEGLPCGDKWWLLQINKPHESSKMEVAAIIIKNFGTPVVIPVGEIVSGWRNGRVSYAFTVEYCMKLDNLSNVHRAAIESNSVLDDSESDSQESETLEDHTEEVDDVAHYLAMITITDRRRAVRIRNSEGQTLVSYKDLVGIRNSTWQRRRNGQLLKQVDELVSAQRNDVEFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HJY7</accession>
    <name>A0A7D9HJY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000733">
        <property type="protein sequence ID" value="CAB3984386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HJY7"/>
    <dbReference type="OrthoDB" id="10063194at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="439" mass="49828" checksum="A5FFF3FBFC73ECC7" modified="2020-12-02" version="1">MYKLKKTDAETITTSLKDILLRCNLTIDDCRWQTYDGAANMAGSRSGVAARISLENPRALYIHCGNHSLDLALHDCVKESGIISDTLKFVQDLAVFIRSSPTRMAQYQHIAEEINDNGMQVENPHLLCPTRWTSTVRDTASGMASQLKKFSTYFGLSFAQNIFSVCEQVASTLQKPSITAQTTVTCVTSLKTNLQRQRDDFHLFYDQVVTSSKAINFVDNPKLSRAKQLPRRFQHEDGEQHHFQSAKEFHRAQCVEALDACMAALQERFDQEIYSVLMNIETVLINAANGHTFELNDAVKRLYEEDLDFDQLKAELKLLEGIISQRLPEVKKVTSIDTITSIFSTEETDSSQIVMAMFNVVRLLQIYLLAPMSAASGERSFSSQRLVKTYLRSTMTAARYNNLIVMHVNKARTDELDLSLIAKDFVLKNERRVRFFGKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HMH7</accession>
    <name>A0A7D9HMH7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A072292</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mab-21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000969">
        <property type="protein sequence ID" value="CAB3986146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HMH7"/>
    <dbReference type="OrthoDB" id="5964386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1410.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046903">
        <property type="entry name" value="Mab-21-like_nuc_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046906">
        <property type="entry name" value="Mab-21_HhH/H2TH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024810">
        <property type="entry name" value="MAB21L/cGLR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656">
        <property type="entry name" value="CELL FATE DETERMINING PROTEIN MAB21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656:SF42">
        <property type="entry name" value="CYCLIC GMP-AMP SYNTHASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03281">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20266">
        <property type="entry name" value="Mab-21_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01265">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Mab-21-like nucleotidyltransferase" evidence="9">
        <location>
            <begin position="83"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="Mab-21-like HhH/H2TH-like" evidence="10">
        <location>
            <begin position="258"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF20266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3986146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="389" mass="45027" checksum="B9F004030986C157" modified="2020-12-02" version="1">MSCEADTTTEIIRRNKVKQTQTDLDPLAVALNNFYENRVRLGLERKEICEDIAQAVSDKILRKIETADSRFRGKSVVSQGIPYDGLQAEQTIHLDMLVQLSFGKSSAVFFRKDEDQGLRVQPESSTLWKECLSRNGFLSAEKINKILRYYVAKAVKVLNRYIRKGTKEKLPNRLRSISMKDGAEIVLIVNKDITINLLPAFVLPDSRLDPGRQDCPSSSHVVCRPCIYDSARKMKMVWKWCFFVAEKNRIRALGAPSCRVQLLRILTEIRDTHEGLRMLSSYHLKHVLFHETHRLNDVNVWASEHISERFKDLLQRLLSFLQERNLPHYFMQPPDFEAVNLLQDIDSDSLQEMSEAVFNILQDPYESLSCEGTEQRQSLWPWELELLSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNF5</accession>
    <name>A0A7D9HNF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Interferon alpha-inducible 27 2A isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A007907</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the IFI6/IFI27 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001461">
        <property type="protein sequence ID" value="CAB3989299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNF5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009311">
        <property type="entry name" value="IFI6/IFI27-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038213">
        <property type="entry name" value="IFI6/IFI27-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16932">
        <property type="entry name" value="INTERFERON ALPHA-INDUCIBLE PROTEIN 27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16932:SF18">
        <property type="entry name" value="INTERFERON, ALPHA-INDUCIBLE PROTEIN 27-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06140">
        <property type="entry name" value="Ifi-6-16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="74"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="145"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="179"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="179"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="202"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="237"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3989299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="24336" checksum="ECE19F1FB68EEE47" modified="2020-12-02" version="1">MADKKQTENSKPNDDEKKNGREKYKINCGSTSNTENEKNGGGAAGSHGDCPRPGGDSGGKNPDKKRKNPGKKSWVVPLAIGLGTGVVAVVAAPLAVAAAGFTTGGIAAGSVAASMMSSAAVANGGGVAAGSLVATLQAVGATGSLAAAGASVTAAVGGIGASIGAGIGWLANKFTRGKKGGDDGGKNDDQSGDGGQSGKNVQFKKGRKRSKRGTQCSSDGGKNPPDDDDSDSDYVTIDDRAISTRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQ28</accession>
    <name>A0A7D9HQ28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gastrula zinc finger</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015462</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001257">
        <property type="protein sequence ID" value="CAB3987960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQ28"/>
    <dbReference type="OrthoDB" id="5976830at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="116"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="264"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="147"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="307"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1061" mass="121852" checksum="9F8FD5A6EA68C8EC" modified="2020-12-02" version="1">MATNFDMNNMTVEQLMALSEIIDDSDYEESFEDEVERISEDKFYRVAPKDKGKDPFEGERQFIDEGDRSTDPKRPRRRPLNEKGKRGIMPTWKYSERQKAKALLVEEAYQSLLSRGVKGLPPTMGGRWRTDDPQVNAEIKRLENIRNPKRPRGRPPKAKTDGAAKTPRGRPPKVKSDAEVVTPKRRGRPPKVKSDAEVVTPKRRGRPPKVKVAETSKPKVKRQTVAERFISQNRIKLSIPADSVITQVGPNKFTVTVDLSKKPTRKAPEVPKGVAPRKPVPKPRTVIPREKPIPKPRTVIPRERPVPKPRTKKPVPPPKLRKPVKVTKEVGEQPVVVAPEEHEIDPFGTYLEKPSYRKIETAANGAAVTYSITPNYMDPLDQMTASRQVVRGVLVNELKRMGGLKYTETIKVRMSKEIGNDKTKKDSIYFKSKTGTATNFEDIESTAAQNQLTILSRIETFQNLGSNWIILNIESHYVNIAMYKPLKGSSYMKLPADISNPKCGLINMKNNDEKCFMWSHVRHVRPKVRRATTITKQDVEFAENLDYEGIDFPVKISDIDKIERKNSISISVFGYKGKKQFYPIRNSKTKYDEHMELLLLGDNEGGNHYVLIKDVNRMLFSVSGNSNKKHFCLHCLHSCVSEESLKKHSETCIEVNGTQATKLPSEGTKIKFKNHRNSMPAPFVIYADFESMLVPEERKVDSEDTEEKSTTELYQTHKACSFGLKTVCHYDDQYSGEYVSYVGEDATEVFLKTVLKESIKCREMVNKIFKKKMIITPEQETEFWMTRNCSICGNDLGDDRVRDHDHVTGLYRGAAHNMCNLKYRVTWKVPVVFHNLRGYDSHLIMQEIGKFKMNINVVPNNMEKYISFSLGKSHVFIDSIQFMASSLEALVSNLSPEDFKIVGQRWQGEDFDLVRQKGIFPYEYLDDISKLDTEGLPSKDKFYSSLYESEVKEEDYQRALKVWDHFKMKTMRDYHDLYLETDVLLLADVFENFRKTCLENYKLDPAHYISAPSLSWDAFLKQLGEEIELVSDMDMFQFFEKGMRGSQSRLIQAVNLAEKLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWR2</accession>
    <name>A0A7D9HWR2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cubilin, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A020238</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001715">
        <property type="protein sequence ID" value="CAB3990727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWR2"/>
    <dbReference type="OrthoDB" id="10012881at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="CDD" id="cd00190">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000018">
        <property type="entry name" value="cubilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000013">
        <property type="entry name" value="Membrane frizzled-related protein"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.10:FF:000003">
        <property type="entry name" value="Transmembrane serine protease 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251:SF50">
        <property type="entry name" value="ATTRACTIN-LIKE 1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24251">
        <property type="entry name" value="OVOCHYMASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="164"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3990727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1079" mass="119834" checksum="B915F2A04C4EC2C9" modified="2020-12-02" version="1">MMKMCKMPIIQNYLFAFIFLLVNVNPSSSSVCSEDIIVVKRSISSPNYPYHYPSNANCTWIIKSPLEDREIVLKIRDLDVEAQALCNFDYIQIGSGSIPGKNIIVTRLCGRQKPGPIKSHSDALWLRFVSDGEKTFRGFRATWKAKKIRQSQAFPNPANEKNVCGEANLNGIEGSIKSPKFPRKYPYDQECQWIIKAPVKNRIVIRFEYFDLEGASKCRFDYLVVKDGEYDNSKTIGRYCGSSKPATITTSSNTANLMFNSDTSIARGGFLIRWKAVDPLTATRTAVVQTTATTTTENPTEPEECEFQYTSNHGSIQSPLYPSFYPEDILCTWVISVEKPSRIRLTFGPEFDLENGEQCTYDFLSIRDGANVVDKEIGRYCGQHSPETILSSASSLHITFRSDKSGVGKGFLLAWVAERVSGPNPTTSSTTKTPECGGRLTEATGVITSPDYPMMYPSNQHCIWFLSMSSDSQVRLTFDYFDLEDNLNCAYDYLLIRDGADANSPVIGRFCGPSTYISDQFLYSSGRDLRIEFHSDISGSKGGFRLTWESVLKGTTQPTSITTPTDFGKHRIMTGCGGFFELGLHSGTIFSPFYPENYTPNLSCTWTILVDDEVQVAVSFNEFELENTPECSADYVIVRNGISENSEILGKYCGTDVPVYLLSRRNELSVTFRTDGVRNARGFEISWMKYRRSPSGPVAWTQPPVTNQAPICVNEFGSLTGASALSVNDRCQWSLRAEGDNQIQLDFADFNFGASHSSCIEDYVEIRNGLTEYAPVVGKFCSGKKPYQITSTGRFMIVRYVMSGKVQTTFKLDYKEVGSQKNDALFAFNKDGCGSSILSQDTDDGRRRDNKLGEWPWQAALMKKGMSAVTCGGVLISPDWIMTAAHCFKRSMVPSEWSVKLGSVDIQSGGKSEQRFDISVMRVHPNYNSSSNENDIALIKLHKPAQLNINVSTICLPDQDSDQLYENGNICHVAGWGTDRVFTDPVYPLSSLVLPIVSNNGCDTFDEFAVTDNMLCAGHQNGIDTCHGDGGGALMCKSSKGFVGVGINSVGEGCGDSKHYGVYTDVRPYLDWIKVQLFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I381</accession>
    <name>A0A7D9I381_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003657">
        <property type="protein sequence ID" value="CAB3999729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I381"/>
    <dbReference type="OrthoDB" id="5976724at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05481">
        <property type="entry name" value="retropepsin_like_LTR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="622" mass="71054" checksum="373E95E66D28ACE0" modified="2020-12-02" version="1">MASGNLQWAAPKPLKLDGNVSENFRKFEEHWTLFENTELKGRSEEERCSYFLLCIGEKGREVHKTLTFATPETETNQEGATTWKRTTNELKSAFKTYCNPRKNITFERHKFNIRNQEENESIDQYVTVLCTLAATCEFETLHDGLIRDRIVCGIRNQSIKERLLRESELTLQKTLDICRASEVSRKQVKSLNDQSSANVDALGKDQRKHNYRGNFRNHNNKPENGKPPNKSCGNCGRVHEPKSCPAYGKKCNNCHKLGHFAKLCRSQAKNPKKSVHDVDYESDSSTHGIDMVKTAVTSDNDEEHASLKINNTTIRIKLDSGAETNVLTKKDFEAAVPKRQRRSKLKTSAAKLTAFGGHNIPVIGKCYLKCQYKGATEVLEFQVVETGKSLLGCTNCKRRISDPYHIKINPDATPVVHPPRKLPSALRDRVQNELQEMESRGIIKKVNEPTAWVNSMVVNEKRSGKLRICIDPRDLNKALRREHYQLPTQQEITSRLTDAKFFSKLDANSGFWQMLLDEESSYLTTFNTPFGRYRFTVIPFGVVFAQEVFHKTVNEKFHDLPGCETDINDILIWGRTLEEHDQNFERVLNRVADINMTLSKDKCQFRQTKITYLGETLTANGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8Z8</accession>
    <name>A0A7D9I8Z8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sphingomyelinase D, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002833</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004240">
        <property type="protein sequence ID" value="CAB4002030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8Z8"/>
    <dbReference type="OrthoDB" id="5948386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="28308" checksum="2D7FC0925A79CF9C" modified="2020-12-02" version="1">MFHLQKMAHLTTSITGHPVMLVAIAYVGLTLGTTSKLFEREHFMTARSSTCRQLVLVMFDVKLKNVKKNSLSTAGEKFANKILIPLYKDNPTKMKVIISVPDFTLKDFIVAVLSQLKATGNPDIIQKIGFDISWESKLTESGEKEKALRDLGVSPYHAWLSSGITNWSPKKYLDELSSQVKYRDNGNYFSKVYAWSVDKKSTAKTYLEMGLDGLIMNFPGRMNEAIAEINKKKGQTMRLATLDDDPFELIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IGN4</accession>
    <name>A0A7D9IGN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Fibrillin-2-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A042002</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005175">
        <property type="protein sequence ID" value="CAB4005364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IGN4"/>
    <dbReference type="OrthoDB" id="6286622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007156">
        <property type="term" value="P:homophilic cell adhesion via plasma membrane adhesion molecules"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11304">
        <property type="entry name" value="Cadherin_repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd00041">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000005">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000014">
        <property type="entry name" value="Latent-transforming growth factor beta-binding protein 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.290:FF:000005">
        <property type="entry name" value="Procollagen C-endopeptidase enhancer 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.60">
        <property type="entry name" value="Cadherins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.290">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002126">
        <property type="entry name" value="Cadherin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015919">
        <property type="entry name" value="Cadherin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020894">
        <property type="entry name" value="Cadherin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000859">
        <property type="entry name" value="CUB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035914">
        <property type="entry name" value="Sperma_CUB_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24255">
        <property type="entry name" value="COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24255:SF31">
        <property type="entry name" value="CUBILIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00028">
        <property type="entry name" value="Cadherin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00431">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14670">
        <property type="entry name" value="FXa_inhibition"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00205">
        <property type="entry name" value="CADHERIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00112">
        <property type="entry name" value="CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00042">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49313">
        <property type="entry name" value="Cadherin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49854">
        <property type="entry name" value="Spermadhesin, CUB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00232">
        <property type="entry name" value="CADHERIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50268">
        <property type="entry name" value="CADHERIN_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01180">
        <property type="entry name" value="CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 14" id="KW-0106">Calcium</keyword>
    <keyword evidence="12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4 15" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="13" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB4005364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="529" mass="60780" checksum="C4511A8C1E361C0E" modified="2020-12-02" version="1">MRISVKKYCAVFVLWLAMLGTAESRGNRRCQKSLRKRGKCRTSAILTKSFGTFHSPGYPRNYTNNVQSSWHIRVPKGYRIRIRFRKDFHVEDSTLCHKDALVVAFDKSQKNTKLFCGKKRQRGVTSSTNELWLIFRSDDAGIAKGFFATYRAIDVNECRKEVCKFPSLCRNTVGSYMCDCPDGYRLRGRKNSGRCVDIDECSSRQVKCEFKCVNTAGGYHCVCPRGYRLAYNEKSCRDENECLKHNGGCSHQCRNSRGSYTCLCPTGYKLDSTRRTCHKEIFYDSYQQIYYVKEDVAIGTLVTKVKATLAKRHGQKMLFFIVAENLKSEHPTFKMNSTSGELTVNASLDRETVSEYLLEIEAKHLNEKKKWTKARSFVVVRILDINDHAPRFSHPAYTISVPCNVKPGSVLYRIDTYDQDEGKNAQVMYKLEPANPYFTVQKHSGKVKVLKGLHEFCNESSSSPLRRFEYKIVATDRGRPALRTRVHVRFIIAAVDLTSQTMFVWYTENHDVKLVKKSSRKTLKQTDST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IMR7</accession>
    <name>A0A7D9IMR7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070913</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007757">
        <property type="protein sequence ID" value="CAB4013109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IMR7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14386" checksum="C2B2D546DB27DEBA" modified="2020-12-02" version="1" fragment="single">HQKAKENIDKKKISNKQYYDAKKNTKTSKIKEGNIVICKQKPNNKLSPRFNPERFTIVERKGATATVRNGRRTITRNVTHFKVAKPVDEQSSDEEKSITVEDVQDDRVGDDMLDFIEESHPIACK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IP79</accession>
    <name>A0A7D9IP79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC113053479 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025934</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006717">
        <property type="protein sequence ID" value="CAB4010230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IP79"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="305" mass="35484" checksum="53DF806CC5FBFDAD" modified="2020-12-02" version="1">MPNSLQTGLLFTSIYFNVTINVIYLTVIDDEENEAMEVNQVGRPSVHVTKEMITELLALKLSYAQIAKVLGICRTSLYKKMNEYRIDYKEKYSIISDNELDNTIKQIYQDQHKMGEVMLMGHLRSKGIDVQRKRLREAIHRVDPVGVEERKANGIKRRVYEVPHPNFIWHIDGNHKLIRYRLVIHCAIDGYSRLITFLQCSDNNRSQTVVELFNEATNEFGMPKHVRTDHGGEHVGIWTTMYNVYGDENNPVFTGRSVHNQRAERNNRDLNVSITSPFKKVFEELELEGHLNVDNETDIFCLHYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQ29</accession>
    <name>A0A7D9IQ29_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022730</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006880">
        <property type="protein sequence ID" value="CAB4010721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQ29"/>
    <dbReference type="OrthoDB" id="6733179at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="29"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="198"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="687" mass="78779" checksum="EE9A640F2552FE7A" modified="2020-12-02" version="1" fragment="single">PTVALKDKTPHECIFGEKTDVSNLKVFGCMCYVHIPDSNRRKLDQKSYEAIFVGYPTGTKGYKVYDVKRRKFMISRDVQFLEKKFHNFENPKNDFVFEQKERIEVPDDEKQTVELFDLDRVDELDDQTFNEDQDEFRVDPVVETNINLNETMEQPVNPENDEPVGESETLSTSKTYEERFMENVKNLGTVRQRMIPKNDTWELVPPCDDQNVVGSRWVLKVKRKEDGSIDRFKARVVAQGYSQTKGADYDEVFSPVARHTSLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPDYLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKSVKKDGGRISFVILGVCVDDIIPVSNDIQMVNSEKKALSERFKMDDRGEVHYLLGMLIKRDREARVTTISQRNYVERVLSKFGMESCKPVSTPLEPGTKFSELSNEDEKFDTQTYQQAIGCLTYLSVISRPDISAAVGALSQFMAKPSKDHWIGVKRVLRYLKGTLDYGLKYSADENPTLVGYSDSDWAGDINTRRSTSGYVFQVANSTVSWSSKRQRTVAKSSTEAEYIALSLATQEAIWLQRLLYDVGFKIRKPITIFEDNQGTIELAKNAKYHNRTKHIDICHHFVRERVQSKEINVVYCRTDDMKADILTKGLARSSYEKLRDLIGITSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQ51</accession>
    <name>A0A7D9IQ51_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005065</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006878">
        <property type="protein sequence ID" value="CAB4010719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQ51"/>
    <dbReference type="OrthoDB" id="5980942at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="12864" checksum="6683435FBFF9C62E" modified="2020-12-02" version="1">MRVLPFLLGKTKKQSKKARAEEQPAKETVLSDVIEIVPEGSTIEEVVEGGRRNHPRIHIKGDPIPERVVIAAERTVLFEVESRGMVEAMLALLATYYVICLSILKLIYIYKNAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IQ84</accession>
    <name>A0A7D9IQ84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Vegetative incompatibility HET-E-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001805</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006869">
        <property type="protein sequence ID" value="CAB4010683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IQ84"/>
    <dbReference type="OrthoDB" id="6262491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848:SF8">
        <property type="entry name" value="F-BOX AND WD REPEAT DOMAIN CONTAINING 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="39575" checksum="215B9CFC0A3999BD" modified="2020-12-02" version="1">MILNSLVHVYTVDIIYTKDGVIKAWDYSTGEAGKSVRSVHEHEGFVTAFLFWSEAKLMFSCGNDGSIIAWGSGGAVHDQVNIGVPIYGMAWHSRRNQLIACAGTTVRVFSMKDPGKELGHVIDTKAYIGREHVDIVKCIATLETRVYSAGFDRTLIVYESLSYPGARGLKVAMCIKEAHEAGITCLSVTRDSDNNTWLFTGSFDKTVKIWTPDGQIMHKFDGFSSVITGLVYVRPAKTIWISAGVSEAPIYDPKSGENVSDFIGTFHTPNENIPLELLTFIPELGQVIGTNIRRQLILWKFNPSGCLTTLRHNCPVESLAYTPKVPLLIFSGGSDGNVTKWERLQASNFIYSPDLEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUE8</accession>
    <name>A0A7D9IUE8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Endoglucanase</fullName>
            <ecNumber evidence="9">3.2.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A026674</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>Endohydrolysis of (1-&gt;4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.</text>
            <dbReference type="EC" id="3.2.1.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 9">Belongs to the glycosyl hydrolase 9 (cellulase E) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.4" evidence="9"/>
    <dbReference type="EMBL" id="CACRXK020009209">
        <property type="protein sequence ID" value="CAB4016658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUE8"/>
    <dbReference type="OrthoDB" id="10257085at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008810">
        <property type="term" value="F:cellulase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030245">
        <property type="term" value="P:cellulose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001701">
        <property type="entry name" value="Glyco_hydro_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033126">
        <property type="entry name" value="Glyco_hydro_9_Asp/Glu_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22298">
        <property type="entry name" value="ENDO-1,4-BETA-GLUCANASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00759">
        <property type="entry name" value="Glyco_hydro_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="Six-hairpin glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00698">
        <property type="entry name" value="GH9_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4 9" id="KW-0136">Cellulose degradation</keyword>
    <keyword evidence="6 8 9" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3 8 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8 9" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 9" evidence="10">
        <location>
            <begin position="1"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="342"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU361166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4016658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="42122" checksum="BE4D0DDB02384B51" modified="2020-12-02" version="1">MAFSTTLLTWGFIEYKTAYSAAGEHDRMLDSIKWPLDYFIKAHVSKNELYGQVGDGHADHAQWGRPEEMTIARPAFKIDQASPGSDLAGETAAAMAAGSIAFRETNSQYADTLLRHAKELYEFAAQYRRAYTDSINQASDFYRSSHYQDELAWAAAWLYRATDDPNYLQKAEQHFAEWTPFGNPAWGFSWDEKTAGVQMLMYQLTGSNVYQTLIQNSLQQWLPGGSVQYTPKGLAWRIQWGANRYSANTAFLALLAADKGLNSEAYTTFGRNQIHYMLGDAGRSYVVGFGENPPQRPHHRSSSCPNLPASCDWSDYNNPGPNPQILNGALVGGPDQNDNYQDKRDDFIMNEVACDYNAGFQSAVAALKAREECEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J5Z5</accession>
    <name>A0A7D9J5Z5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067731</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012092">
        <property type="protein sequence ID" value="CAB4022677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J5Z5"/>
    <dbReference type="OrthoDB" id="5987340at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="28305" checksum="93B3BC5ED241D595" modified="2020-12-02" version="1">MPEVSEIDKCRAKRKVAKASVTRNMNRVRELISSDGSVSKVRQFAKGVEEGRTKARDLKKKLEELDPASIETDGSWLEEVEFDVNEVLGEVAEYLLKSESPSPNEQSSITPPTAQNNDENTETVNDSMSGKRTGLKGVEIPSFDGKPDKWPYFGGIFSSLVHKNDKLTPAIKLAHLNSCLTDRVREVIACLTGEPGDCKSRSSTRGRCFTGRRQNRKGGNSVGVEASSYVGPRTCCHPVDRDPLSPKTYPRGSRTCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JQ07</accession>
    <name>A0A7D9JQ07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035097</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019859">
        <property type="protein sequence ID" value="CAB4034141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JQ07"/>
    <dbReference type="OrthoDB" id="5978836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="203"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="245"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="246"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="289" mass="32470" checksum="F56194D45D90A7CD" modified="2020-12-02" version="1">MPSTTSTQTIDRFRTIFARYGVPAQVVTDNGPQFTSAEFQLFLKTNGIKHITTAPFHPATNGQAERFVQSFKHAMKCEKQSASQLKPNMAKFLLAYRNTPHSTTGESPSVLFLGRPLRTRLDLVKPDLQRKVMNRQIDQAGRKGHSPTRQLSIGQTVMARNYSGKDKWLPGIVRAQTGPLSYEIKVGPNRIWRRHIDQLRASSVKVNDQSDDTADPHPELGETGQNIAPAEEIVAEPDIELATNPPVVQQQEAGRATTGSEQRYPNRSHQPPERWVLNCLIRKLFKKIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JTQ8</accession>
    <name>A0A7D9JTQ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ankyrin repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A009855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021085">
        <property type="protein sequence ID" value="CAB4035475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JTQ8"/>
    <dbReference type="OrthoDB" id="5968364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000976">
        <property type="term" value="F:transcription cis-regulatory region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050663">
        <property type="entry name" value="Ankyrin-SOCS_Box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24193:SF121">
        <property type="entry name" value="ADA2A-CONTAINING COMPLEX COMPONENT 3, ISOFORM D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24193">
        <property type="entry name" value="ANKYRIN REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13637">
        <property type="entry name" value="Ank_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="14"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="11"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="501" mass="54399" checksum="F877FFF099386F26" modified="2020-12-02" version="1" fragment="single">MSKLVIAAITGDFDEVKRLVEHGADVNCEDQFEGSPLHIATSSGSLEIVKYLVEHGADVNCENDFEGSLLHSATSGSLEIVKYLLEHGADVNCENHNKGSPLHSAASSGSLEIFKYLVEHGAYVNCKNHRKGSPLHSAASSGSLEIVKYLVEHGADVNCENDFKGSPLHSATLSGSLEIFQYLLEHGADVNCKNDYLGSPLHSAASSGSLEIIKYLVEHGADVNCEKECRGSPLHYAASSGSLEIVKYLVEHGADVNCENHHKGSPLHSATSGSLEIVKYLVEHGADVNCVKGFRGSPLHSATSSGSLEIVEYLVEHGADVNCENAFEGSPLHSATSSGSLEIVKYLVENGADINCKSWWNNIEPVIQNAVEFGLLEMVKYLVEHGAELTNEENLDMPTILFLACEGGNASIVDYLLQHGAIKDVNNWKLKSPLRIACLEGHTDIVQTLVKYNVDIRKEKEPLICGNNEIINILNVELKKSLKHRKKITILKGMDNVNLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0S2</accession>
    <name>A0A7D9K0S2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027204</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024470">
        <property type="protein sequence ID" value="CAB4038683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0S2"/>
    <dbReference type="OrthoDB" id="6145557at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33523" checksum="F7C04FFB69FE4BEF" modified="2020-12-02" version="1" fragment="single">MAGRMLDPIGPLSQLWQTAILAEEKATGIDPSLVIEACRRAMSLIGNASHCALVDRRKGLLAKVSPDCLDLVDDPELFGPGSSELFGKKFKKAILKDLKLSKEMDSLMSGGHHGNGKNNYKPFKPFRQQPGKGPGYNPRSWDQSTGFNSRSWNQPSQCRGGFSRRGKSNFPKSEKIDIEITALLDKGALNKVEPVSGQFISNIFLVPKRDGKSRPVINLKDLNAHIQYDHFKMEGTHLLRDLLQPQDWLGKIDLKDAYFVIPIWNEHRKYLRFVWKSTLLEFACLPFGLSAAQRLFTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KAC1</accession>
    <name>A0A7D9KAC1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031572">
        <property type="protein sequence ID" value="CAB4043130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KAC1"/>
    <dbReference type="OrthoDB" id="6628349at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="20656" checksum="FC7A0AC9F0045A5E" modified="2020-12-02" version="1">MEARDPFTEIVNEANRALIVNNLGPIRPLIEFPVSTSGKRTFKFQSRWYDLHSWLEYSVLKDAAFCFNCRCFGTLVGSSEETFTKTGFRTWKKASGESGKLANHAKTQMHILSMERMQNFKSENQHIDVQLVGIAEASKTRKEQEREENRQIVQTIFDVVRHLAKQNTAFRPWAQRDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KBL3</accession>
    <name>A0A7D9KBL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031786">
        <property type="protein sequence ID" value="CAB4043218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KBL3"/>
    <dbReference type="OrthoDB" id="6589456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43907:SF3">
        <property type="entry name" value="DYNEIN HEAVY CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43907">
        <property type="entry name" value="SLEI FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="370" mass="42318" checksum="B0F8DC33E6317432" modified="2020-12-02" version="1">MKARLFEKGVLLFEKGVLLFEKNAPLFEKGVVLVEKNAPLFEKGVLLFEKKVSLFEKGVLLFEKNASLFEKGVVLFEKKVSLFEKGVQLLEKNAPLFQKGGVLLFGKNTPLFEKGVLIFEKKVPLFEKGVLIFQKNAPIFEKGVLLFNKNAPLFEKGVLQFEKNAPLFEKGVLLFEKSAPLFLKRVLLLEEKVPLFEKGVLLFEKNVPLFEKGVLLFKNNAPLFEKGVLLFEKNAPLFEKGILQFEKKVSLFEKGVLLFEKNTPLFEKGVLQFEKNVSLFEKGVLLFEKNVALVEKGVLLSEKNAPLFRKGGLLFERMLRYLKRVPVLEEKVPLFEKKVLLFEKGVLLFEKSAPLFSKRVLLLEEKVSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KZU3</accession>
    <name>A0A7D9KZU3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A007288</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012223">
        <property type="protein sequence ID" value="CAB4022921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KZU3"/>
    <dbReference type="OrthoDB" id="1100386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011">
        <property type="entry name" value="ADHESION G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011:SF347">
        <property type="entry name" value="FI21270P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00249">
        <property type="entry name" value="GPCRSECRETIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4022921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14135" checksum="C79652E434227E64" modified="2020-12-02" version="1" fragment="single">MASFCWILLEATMLYLKLISVYGGEFVRMRNFYAFGWGFPLVYVGLSSGLKIDAYGTDKWCWLSYEEGFVWVFFAPVIIVTSVTLVALVAVARVLIRAAKTQTNNKKYIVSAARGIIILYPTLGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1W8</accession>
    <name>A0A7D9L1W8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Neurofilament medium polypeptide</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A026262</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013041">
        <property type="protein sequence ID" value="CAB4024448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1W8"/>
    <dbReference type="OrthoDB" id="6012729at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050090">
        <property type="entry name" value="Tyrosine_recombinase_XerCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30349:SF41">
        <property type="entry name" value="INTEGRASE_RECOMBINASE PROTEIN MJ0367-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30349">
        <property type="entry name" value="PHAGE INTEGRASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="454"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="26"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="60"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="100"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4024448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="561" mass="63402" checksum="110647AA649BD9A1" modified="2020-12-02" version="1" fragment="single">SKLRKDIEKEIKDDNRKKTPQKTQKKRDTLAEKGRKSVVSIPAKKPAAKRRLQLCDNPTSPSQHPSDGSPPSHHSSDSSPPSHHSSNDYPDSPDLFIDSTHSHPSDEIPTLEHPDVTAEPPEELAVPKEIQRSSIAKVVEIQPLLARFLDHLLSVEGGRRGPKPSREAQWRVGRLLYEVDETLANVNLLWNDDAMVHIRRAFIEGNHLLTKPRKVGTLRAYLSALLMFYNFLLTRASSLANEFGFQQNDFSLVKEFQGRVSNWMKSFTEESASRKTEVHQEDFQSLLTSSQMWNLFNSPLHDKFEKRFEKLDDPENEFVELRDYLITMLLLQSAQHPGAVCNLTINKFQAGEWDESTSVKQFVTLTKRHKTAGTGPASLSWDTRIYKCAQIYLEVLRPTVANKHSFLQRKDKREKEPLFFLTVRGNPIPSSQISNRITKVAKLLDPSISGNVTGKQIRKSAVSSHRQLDDSGESSGLSKEELARQMSHSTSTAEGHYAMRDTIKGHARASNFLHYVVATTPGKAKSPKKMKPEGLWKAVVRRKVSPEKPLRSLQSNCLVSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LEA1</accession>
    <name>A0A7D9LEA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from type-1 retrotransposable element R2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008316</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017366">
        <property type="protein sequence ID" value="CAB4031115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LEA1"/>
    <dbReference type="OrthoDB" id="416119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="29222" checksum="15FBD7A2518A24A0" modified="2020-12-02" version="1">MEIDDLNRTMWAYFSANYGQVKARNEFNHYNSMSKSKLKKCLRKLKLQNGKLKEIKYVSRLLRKKFRSHVQRNYEEELSKDFWKFCKKEFEESETQEPNFDESSCYDYFRNIFFEKHKNRTFNLPSWLKPFPVPSSNFDLECPTYQEITKIIRKMKSSGSPCPIDQISIIPFKRCPILRTQLWRLLSKCWTEKYIPTIWKRAVAVFIYKKDSPDNPANCFRASHVESFHLCDKEQNFQIRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M5V3</accession>
    <name>A0A7D9M5V3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062504</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032835">
        <property type="protein sequence ID" value="CAB4043656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M5V3"/>
    <dbReference type="OrthoDB" id="5986190at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11134" checksum="357755B2CCEA193D" modified="2020-12-02" version="1">MRENSCLELQCFDVYDAKEFLLSRTGIPRTDDTEAAACKLFQELGGLRLALEQAAAYIKSLGCSFSSYLETYKTKRLSLLNQHSNRLPNPCLSILLPND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M8S9</accession>
    <name>A0A7D9M8S9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Unc-13-like C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063368</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034010">
        <property type="protein sequence ID" value="CAB4044117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M8S9"/>
    <dbReference type="OrthoDB" id="7417618at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="29342" checksum="E7027453DB412011" modified="2020-12-02" version="1" fragment="single">MATERHAAKRSAQNLNNSNISMPNKAVKTKIQKLKNEKNDVEESNNEKEIELKDIYEMMQSMMTRLNKLDSIESRVMTFEEELRDMRASIEYAHGDIKELKDESEARKKSENLAKQKLEKLEKENELLSKSIVDLKARSMRDNLIFYNLPETKEENTTDIIHNLLEEKLGVENVRRDIKIDRSHRLGKPRSGESKPQPIVARFNYFQDREQILKNAKKLKGSNLGIGEQFPEEIVKIRKELYPELKRAKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MBW0</accession>
    <name>A0A7D9MBW0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A005604</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034359">
        <property type="protein sequence ID" value="CAB4044245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MBW0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="330"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="206"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="277"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4044245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="412" mass="45615" checksum="BFCA6746748D43D9" modified="2020-12-02" version="1">MKHKSANLGEKVTLHPAVPNANNESHIWLLNNCRIGQIQPGQEPVVYDPNYQLMDNGDLKISKMTKQLEGEYERVGDPPIYLRAKDAIVTDVSSTYKAEKIIDVGIQNKWNITCHCDTKCDGNCEAKIDKMTLCFKKPDDDQCTNLANATIVSKPETCEATVTYIQTVQTSRNTDLKYFVKFPQIHVSDFRPGSSREVDSQTFLLSQAPSTEENPTPKSNTVSTITRNPGQKNAEQSLKPTNTLSMTSGVESKYTQPPSISTNNQPTPPPSTKESTHPITNPPAKSNIVSTINLNPGQKTTEHQPSTKINQPTHRKFSCEQTHGDCRTPVIVSIFAAGVVIGIAIAIGSFFIWWYCRRYSSANLNTPCQALQLHAPSTQDLNANAGNVNRLYVLSSENPDARDNAEHTETRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MC35</accession>
    <name>A0A7D9MC35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043639">
        <property type="protein sequence ID" value="CAB4045947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MC35"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="18398" checksum="86B7BA71E73B02DA" modified="2020-12-02" version="1" fragment="single">TERHSEELEEAERCGHGGLLLILGSHLDLVVRHLQVKASEDDASVHLRIEVGDTWQRITVEACDGVDAPKIATHPEGAITFRDNSSKILRTASALSPKSGRGREYTGFELPVSMRIGANKAGASSLSVGNDDWNFAKWSAIDCLAESTVSGGRGTNDDASGLNVDSLLVEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVI8</accession>
    <name>A0A6S7FVI8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Translocating chain-associated membrane 1-like 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A071423</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000704">
        <property type="protein sequence ID" value="CAB3984174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVI8"/>
    <dbReference type="OrthoDB" id="3053196at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045048">
        <property type="term" value="P:protein insertion into ER membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006616">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane, translocation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006634">
        <property type="entry name" value="TLC-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016447">
        <property type="entry name" value="Translocation_assoc_membrane"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12371:SF11">
        <property type="entry name" value="TRANSLOCATING CHAIN-ASSOCIATED MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12371">
        <property type="entry name" value="TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03798">
        <property type="entry name" value="TRAM_LAG1_CLN8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00724">
        <property type="entry name" value="TLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="121"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="250"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="298"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="332"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="332"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3984174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="372" mass="43167" checksum="69552085AC261034" modified="2020-12-02" version="1">MPAPRKKNKKSSVFSHEFIITNHGDIVSCVCMLFMVGLLFKATQKVASVFVGPQHNITRYNNDTGEVEATHYAVGKKDICTIFFYSLAWIVIHAIIQEYILDKINRKFHLSKTKISRFNNLGGHIPFYFASAAWGADIILKESLLPKLSNLWHGYPHIEMTFMVKFYFLLQIAYWIHCFPELYFLKAKKEDLVPRINMYLQYLVILIPAYMCNFTRLALVCFVIHYCVECLFNAIKIMNYMGKTETSKNTLVIIWALFYIAARIAVIILSIVTIWIGLPKQDSSDRYDIVPNFNKKPLRIIFLSGIIAMQAWLTWVFISRQVSYWSDVMQSKRQKTAKKKEVKKKGKEQKKAVVEDESEEETPLVNGKEKVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYP1</accession>
    <name>A0A6S7FYP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000347">
        <property type="protein sequence ID" value="CAB3981056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYP1"/>
    <dbReference type="OrthoDB" id="199400at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.920.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46788">
        <property type="entry name" value="EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46788:SF1">
        <property type="entry name" value="EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="182" mass="20257" checksum="473BE1E98AE41FC9" modified="2020-12-02" version="1">MFDRLMLTDLRENVSRLDARAFAEIKSYKDPPKLVHDILKTVLGIFSIEEEEKLDNWPTCKQFINNDLVRMITQYDPTAAQGMVDGKKLSENLEGISHGSVSKQGSMPAQYLFNWAFVCLSLIEHTAKMKQNARQKQGQSQGQRTPQGTASPSDNSTVSPSATQSPDPAKGKMKTNNSNPIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYS3</accession>
    <name>A0A6S7FYS3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box LRR-repeat 14</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000381">
        <property type="protein sequence ID" value="CAB3981362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYS3"/>
    <dbReference type="OrthoDB" id="10254930at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019005">
        <property type="term" value="C:SCF ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031146">
        <property type="term" value="P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006553">
        <property type="entry name" value="Leu-rich_rpt_Cys-con_subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015940">
        <property type="entry name" value="UBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001012">
        <property type="entry name" value="UBX_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13318">
        <property type="entry name" value="PARTNER OF PAIRED, ISOFORM B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13516">
        <property type="entry name" value="LRR_6"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22562">
        <property type="entry name" value="UBA_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00789">
        <property type="entry name" value="UBX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00367">
        <property type="entry name" value="LRR_CC"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00368">
        <property type="entry name" value="LRR_RI"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00166">
        <property type="entry name" value="UBX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50030">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50033">
        <property type="entry name" value="UBX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="249"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="388"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="277"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="311"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3981362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="857" mass="94903" checksum="84E979EA705E2545" modified="2020-12-02" version="1">MAGMVSCEVDTLVATLMSLGFDFDGCQQAIAEGNSTVEAAVEWLLNRGNSKSKTVDKTQDVKSTKNNEPCHSSSTIEDKSDEHVVSRYVTDESQKKAQDEFEQKKRDNIQREAKKRRLIDKQVRQEILQQIKEDRDIANSRRPRGKQEKQSVLEPDVTTTSHAGTSSDFTKNICRLKIRLSSGRNVTETCESCETLLDVITRIKQTYNESDHLDIVQPFPHKTFTGDDLQQSLMTLGLTPGGCLVLKKSSSTTGEQGEYEHHGGEAVKSQGRLEDVQGQDDIESDPDITLPGPDLARSQHIWGAGVTQGGQRDEGREDIPHEGGEDIPHEGEEDIPQQDEIEGGNDIAVPGQDIARHQHVWGAGVSLGRHPYNPHVIVPIIHAESAAEAAEARSRTQTVQHQGKPDTDPISLPSQDVPTLVDTCIKDIAKRLPGHHHPVGSLAPLPQRLCLKIVKHLMKKKTLTPKTLTSFVPCQLQQLVLDHYLYVTNELFHTIRFFKGLTHLSVQSCTVFTDKALEAIAGLKKIIHLDFSNCTQLTNKCLKHLKTHRNLETLKLDNTKVTDEGLCPLFKDSEWNKLHTLSLSKTAVSNITLQALQAKNLNDLHLEQTNVSELQALASLTCLARLNVGGTRITDQSLLCLRNHPSLQKLNLHQTQVTDQGLAHLAGLQLVELCLPNRLNITDVGISYLQDLPLTSMDLTDYVNITDEALRTVAQLTRLTRLSLSKTKISDNGMQLLSGLVSLRELDLERTAVGDDGLDVLSCLGRLEELNLSGTRVTDDGLSSGKLNFLSLLCKLNLSRTNVSDSGVANLQLPELTLLNLDWTLTTEQCRNLLGGCPQLQALRRQNCRTENRLGEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZJ9</accession>
    <name>A0A6S7FZJ9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050522</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000373">
        <property type="protein sequence ID" value="CAB3981306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZJ9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="9857" checksum="C07F1DFB08C4BD94" modified="2020-12-02" version="1" fragment="single">MAKRIHLPHRKATRLILPSFLMIAGLTIFLCGLVRTYHIDEVLTKNAHDEKMLQSQNEHMEWWVGFPLIACSILAVCAVLYDRPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G068</accession>
    <name>A0A6S7G068_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000394">
        <property type="protein sequence ID" value="CAB3981486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G068"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="119" mass="13496" checksum="FC6C9686382B2C43" modified="2020-12-02" version="1">MFLQERILIDLASRGGSVVDHDPAWWNGPSWLSNPKMWPTNPVTEPRPESAAESKQIREVIANVTVSERDEFDDLLERGSLKKLRVCARMKRFLDKCRGTPVASGPLRSVELESQMECT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G848</accession>
    <name>A0A6S7G848_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082241</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000849">
        <property type="protein sequence ID" value="CAB3985259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G848"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="340"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="375" mass="43182" checksum="B9ABB25804B1F533" modified="2020-12-02" version="1">MTDRPYLLEIPGNKLTVQFYNALRKKIGIEDNVTRTIILFFLDSAVPHRSPRNLVKYLAAYNDANHKTVRKLFETQFEIKWQTESGDPDLFSFYGFCKDVVNRTSTGRGRGRGRGRRPGRDPINEVMTYKTRRAHVLSKLYHAQDELHKIRDLTYQKLCPPVYARKDDGTWVTFTFEEKNASKAIRFSRQEPANIGWISNEDLRVYIQSNSVKEYENFPSGKGQLYWAVLEEDDFDNQVQDFGRTQVYVGQAVNGIKERWMGGGKSHCKRMGVARDVMCNMLSYDPTPLQSEQLVDLRLLLHKAWNQDGENSGLFIMDKFTKEGTGKQKKITGDASKLGQAEKDNIDGKKASTSNEFILTENWNPKDMRYGMNGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9S6</accession>
    <name>A0A6S7G9S6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001328">
        <property type="protein sequence ID" value="CAB3988465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9S6"/>
    <dbReference type="OrthoDB" id="10056446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="36121" checksum="6EFC03E02F653BBB" modified="2020-12-02" version="1">MASTQEFPSLKHELRVIKESQNNNKDETNNRFVKAETEIKRLQGRIGSLVEEKSQLLERVAFLENSNAKLHEEITSNHTEPQDQQVNNHISQSETKPQEEKVPGAIDSTAAKASNKNNENQEQVQDQSPEYDFVILCDSNRKYINADQLYPKGNNKVIPCGNTAKAIDILTSPRFTVKHGIIINTGVNDLESLSPKDIIESQTCLVNIATTNFPDKKIIMSSITPRRDDLDKFVFEVNKAVAQNICKIPNVVLVDNGNLRSKDQFYFDTKHLSRRHGIPLFATNLKNGIRKSLGINNRRISGQHRFPYTQIKSWIKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GA62</accession>
    <name>A0A6S7GA62_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase Ty1/copia-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A088044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001355">
        <property type="protein sequence ID" value="CAB3988625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GA62"/>
    <dbReference type="OrthoDB" id="5980437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF467">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="304" mass="34832" checksum="48422A4909E529C4" modified="2020-12-02" version="1">MQLMEEFKESMKTQFKMKDLGRITFFLGMDFKQSKGEIKINQKRFILKILERFGMIDCKPSLTPCEQRLEFNCGELTNARQYREMIGSLIYAMTCTRPDLSWIVSRLSQTLSNPRTEDLIAAKHVLRYLKGTVDYELCFKKSDADLQLTAYSDSDWASCLEDRRSTTGYCCTLTEGGPLISWKSRKQPTVAISTCEAEYVALANTAQECLYLTQLLNGMYKKVHQSMKVSVDNQGAIAPSKNPVNRQRSKHIDIKYHFVREMYVKGMIDIVYCPTQDMVADILTKPPTKCKLDNFKSIVFGCGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIJ9</accession>
    <name>A0A6S7GIJ9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">Transmembrane protein 230</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">PACLA_8A001289</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="20">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16">Involved in trafficking and recycling of synaptic vesicles.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasmic vesicle</location>
            <location evidence="5">Autophagosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Cytoplasmic vesicle</location>
            <location evidence="3">Secretory vesicle</location>
            <location evidence="3">Synaptic vesicle</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Early endosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Golgi apparatus</location>
            <location evidence="6">trans-Golgi network</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Late endosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Recycling endosome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the TMEM134/TMEM230 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001912">
        <property type="protein sequence ID" value="CAB3991758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIJ9"/>
    <dbReference type="OrthoDB" id="5597044at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005776">
        <property type="term" value="C:autophagosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005769">
        <property type="term" value="C:early endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005770">
        <property type="term" value="C:late endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055037">
        <property type="term" value="C:recycling endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008021">
        <property type="term" value="C:synaptic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009982">
        <property type="term" value="F:pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.660">
        <property type="entry name" value="Pseudouridine synthase I, catalytic domain, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020095">
        <property type="entry name" value="PsdUridine_synth_TruA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044234">
        <property type="entry name" value="TMEM230"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008590">
        <property type="entry name" value="TMEM_230/134"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15664">
        <property type="entry name" value="C20ORF30 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15664:SF6">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05915">
        <property type="entry name" value="TMEM_230_134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="15" id="KW-0968">Cytoplasmic vesicle</keyword>
    <keyword evidence="10" id="KW-0967">Endosome</keyword>
    <keyword evidence="13" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="14 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0770">Synapse</keyword>
    <keyword evidence="9 19 20" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="236"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="274"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="114"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="18">
        <location>
            <begin position="114"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="18">
        <location>
            <begin position="131"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="18">
        <location>
            <begin position="150"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00004603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00007743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00024003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00024088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="CAB3991758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="35282" checksum="552F496873B4CF91" modified="2020-12-02" version="1">MKKYTGLDAIFRAFQHPKMDIPRAPGLGLVLDQVHFRSYNEKFGRDGFHEPLEWSECEDQIKEFKKEFIYSQIVNTEASTNSMMRWLTSLPTHTYSNEGMMDLQKNRDINRIGENSAETKETEKQKDEEMSSNNSAMVSSEAASEKDSTTEPSNEENLSSCIVEPSTETGVPGEQTDREMSSNHNMTVTSEAADPSNEERQIMPVNPRVQYHRVNDSDGYVDAQFRKPPPKVPVKAICLASGLFFVGTVLLVIGSLLFSGYFDVKYGDRTYPMLILGSLMFIPGFYHVRIAYYAWKGYRGYSFEDIPDFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIZ7</accession>
    <name>A0A6S7GIZ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Neurofilament medium polypeptide</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A060626</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001944">
        <property type="protein sequence ID" value="CAB3991928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIZ7"/>
    <dbReference type="OrthoDB" id="5990091at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3991928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="517" mass="57740" checksum="ED4385DD7B0A433C" modified="2020-12-02" version="1">MAVFTHVFATTPKQSFSHRCRDADRERIGFAIRSGDDSNANEFGSGVSGDKGGYGGNEKRGSVDGEGDNDDGEGDDREGDDGEGDDGDTAAANLPSNVDDMVLLSNFKDWLSGPDGGRKYAKCAQQSGVERQVAYHIREGEETWHGEVLPWDPQQLLCQHKFKELGVSEAQVVSLSEQVKIWAKSSRKMSQDRFWEKRLEDIDSLKMPEQIKQFDTSEVARKAVKILGEFQINPEIPMLSKAEYTIVRDYLMTQICINNGSRSGPIANMTLAEFNNATKQDDCIVVHVKKHKTFTTHRPAHIVLSSSLCEYVKIFIERFRNALPEVLCSSQSIVFLRFTGTALDSSQFGAQIGSCWGKVFGKEASMGGATAFRKAAVSTVHESNEEMRGDPADLMVHNQATATKYYLLKNKGKSAVKTSKELSCIMRDLTETEASNEIEKGEEQQPPNKQIHISGDVICHRHKWSIDEEKAVKDIFGSQIQQKKNIFRRYQKCCKRPPCAEEHCCLKNQGQDTTVIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GKG7</accession>
    <name>A0A6S7GKG7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Steroid 17-alpha-hydroxylase 17,20 lyase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A001462</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 13">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Endoplasmic reticulum membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Microsome membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 14">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002363">
        <property type="protein sequence ID" value="CAB3993954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GKG7"/>
    <dbReference type="OrthoDB" id="2789670at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004508">
        <property type="term" value="F:steroid 17-alpha-monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042446">
        <property type="term" value="P:hormone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042448">
        <property type="term" value="P:progesterone metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.630.10:FF:000238">
        <property type="entry name" value="Cytochrome P450 2A6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24289:SF1">
        <property type="entry name" value="STEROID 17-ALPHA-HYDROXYLASE_17,20 LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5 13 14" id="KW-0349">Heme</keyword>
    <keyword evidence="10 13 14" id="KW-0408">Iron</keyword>
    <keyword evidence="15" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 13 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0492">Microsome</keyword>
    <keyword evidence="11 14" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="9 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="13">
        <location>
            <position position="435"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3993954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="490" mass="55777" checksum="C38C6F379591AE86" modified="2020-12-02" version="1">MIVEVAVSLFLIWTIWYISNTCIKKQGMPSGSFPFPWIGNVPHVTSDQAFPFRKLSKEYGEIFTVFMPNGTFVVLNTASLARNARLGTKDDVAGRSSELTNYPLELILGKDVVFSDYSAGYLFRKRVFKSSLHVFGSGLGQAEDRARHAVQLALQEIEKCQSFSPNELVPSTIFAQVWEWLTSKKITLDDPTISLFKEIQGIIMNQSRERSIYLLIPFLGYITNYNRKIEKAKDIKKRLLPHEFSAHRETYTPGVIRDLTDSFIGAYEKEIANWTGKAIGSIEDVPDLMLDVVLTAIDTVSTTICWFILYNVLHQDIQAKLHKELDDVVENDRLPCWKDAQNMPYLQATLCEVLRRSDIVPLTATTVIRDTTIGGYHIPKNTNIVININEIHHDPKELPEPNEFKPERFLDNDGKFVGWTTKHAFMPFGLGRRECLGQLFARIVMFTFASTLLHLYKIELPEGAEKPTTSPIGLQIHHPKDFTVVAKKRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GSK3</accession>
    <name>A0A6S7GSK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SH3 and multiple ankyrin repeat domains 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041543</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002108">
        <property type="protein sequence ID" value="CAB3992716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GSK3"/>
    <dbReference type="OrthoDB" id="6021179at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09487">
        <property type="entry name" value="SAM_superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.50">
        <property type="entry name" value="Transcription Factor, Ets-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052281">
        <property type="entry name" value="GAREM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001660">
        <property type="entry name" value="SAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013761">
        <property type="entry name" value="SAM/pointed_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14454">
        <property type="entry name" value="GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14454:SF11">
        <property type="entry name" value="SERRANO, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00536">
        <property type="entry name" value="SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00454">
        <property type="entry name" value="SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47769">
        <property type="entry name" value="SAM/Pointed domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50105">
        <property type="entry name" value="SAM_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="325"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="421"/>
            <end position="741"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="762"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="361"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="451"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="482"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="531"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="572"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="602"/>
            <end position="632"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="700"/>
            <end position="725"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3992716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="922" mass="103040" checksum="4C4E7E8A19719BE4" modified="2020-12-02" version="1">MTSATEDELLDALIWSDDSYSLTEFITEFPLPQVVRVVRGHDGGTDSSTLGYGEVLTIHAVRETRVLSAEDRNGNAISVGLDFPDEVQILPQTKDCRLNSCEVTDFASFYQTVKYVEVIQAHYGTGDNVDSTSVGEILEIVDISKPHKPGKTKVQVRNSENNQKSTLTSTCSARFRPLLDWKKYKAPELKTHQFGFPVRVRFMDTEVGKDTDYQRLISKSPDINIINEIVDIIVITTTVSSDPVLKFCFEIPKDLEIKVAVAEGFSNGAKHYTDIVTSLNERFDVTKFMSSHQPAPIKRRDVVKQYDYDTIKEYIIDNAILSPKSDEVEPDIDAPPLPPRTPKAVKKSQSFDIPPTPPLKVPDKNVAERKNSAPTVETTPLIKPKPAVPSRPRSISQREGVGVEWIPSGNNYTHALSTSVLQSTNENPCDPSPPEVKVKPPINIPTPSPNVPQSTNNHPNDPSQAERKVSKPPLKIPRNIPVPSTNVPQTTSNHPNDLLQAELKDIVARKRPMKVPVPPPRPRLQDKTSKHPQANNVNEVSEETNLSNKEKEISESEIIQTAEEVPGVTDCTPVTQTTINHPASAILQLPPRPPARDKTSKHPQANNVNEISTETNPIFKQKESSQPTNIQSAAKVPGGTDGTTVTQTTIDHPASPISQMDENENAQRPPRVVSPKLPPRDRRPKLKDSASNFQGDIIDEIPRASGQREIESQQMVKDEKTDTQHVPKLPPKSPGRKRRDLRESHYVQPVALNIPGYLPQSVVSRTLPHTPPPSRNPPIDRFQRPGTLPKNYKIGGNQPYREQVEENEEIYETPYDPPIMTVAPQMNPRRPQSILNENPYELVAKVPLDLSGLSINEVSDILKNLNMGQYAERFEDEMVDGDLLKELKESDLESFRMESIHRTKLLKFVQGWRPQHITKKHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUW9</accession>
    <name>A0A6S7GUW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019017</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002708">
        <property type="protein sequence ID" value="CAB3995663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUW9"/>
    <dbReference type="OrthoDB" id="5985950at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="14054" checksum="26664A27B69D0E0E" modified="2020-12-02" version="1">MEEIHENQLGEVLLYQFEPVLNENRGSSGAESDSESESSSDDDFDEVFEAENSWRLKSLSWCKCGHCTLQTKTIESFCCHEKALEYYEYDALVTNAEGSGQCWFSKLWVYSYGISFTLVRIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GY18</accession>
    <name>A0A6S7GY18_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A015604</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002600">
        <property type="protein sequence ID" value="CAB3995112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GY18"/>
    <dbReference type="OrthoDB" id="7699669at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="153" mass="17176" checksum="92AAC6BA2A1EB264" modified="2020-12-02" version="1">MPILSVITSIINTSLTTSAYPIVWKIAEVAPIPKGKDHPEVANNNRPISLLHLSKVCERVAYNQFVEYLTLKKRLSSKQSGNKRGFSTETLLINITDSMLNAIDQRKVTALVLLDMCKAFDCVNHNLLISKLQDMGGSQSCLQWFSSHLFNRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H5P7</accession>
    <name>A0A6S7H5P7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003312">
        <property type="protein sequence ID" value="CAB3998262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H5P7"/>
    <dbReference type="OrthoDB" id="6007942at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15446" checksum="102A78BC2FD16BF5" modified="2020-12-02" version="1">MAESIQATAVRGTGKGKPKRDSMCRLEEVVQSATGEGIPEALAHLLTYHCRESDTEMRRFVYRSMFSFLSRERGVDNGASLVYPQEILDAVRVLYPDGIKDYPPRAGKRKRLYEVTLEELVQEYRTLKRSPSPEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8U5</accession>
    <name>A0A6S7H8U5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Proline-rich transmembrane protein 3/4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A011574</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002100">
        <property type="protein sequence ID" value="CAB3992680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8U5"/>
    <dbReference type="OrthoDB" id="10066605at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059081">
        <property type="entry name" value="PRRT3-4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25987">
        <property type="entry name" value="PRRT3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Proline-rich transmembrane protein 3/4" evidence="7">
        <location>
            <begin position="2"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF25987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3992680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="284" mass="32429" checksum="46770AF74A0CDB53" modified="2020-12-02" version="1">MKGKWHLAYEVHRVFFGTAFLLLTCSCLRAMIRATKTTPLFTKSRISYAINAVLVFFTLSRALALLLHGYINDEAILTVFALDKFLLNIGFPCLIAAYTRMIYPWLEYLKHRVRRVFNILIVQCYIFILAGIVGTTNYDQHVSLYVKLVLSSCSFLCALCAFITYAKTFYSNSSNDIEKSNGLTVGIINTTSCETAANDMNERKGTTEENIVTVSISCIWIICFVIWGCIVSGNLKRWESDIYVESWYSWMYANVLRMIELGNAAIMSHLVQRVTLKQKFPLQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HA80</accession>
    <name>A0A6S7HA80_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048071</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002170">
        <property type="protein sequence ID" value="CAB3993027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HA80"/>
    <dbReference type="OrthoDB" id="5988733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="166"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="175"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="194"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="248"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="281"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="349"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="403" mass="45027" checksum="B6D5014112C119C4" modified="2020-12-02" version="1">MSKERFVAHVYEDDYREIQELVQHYPSIETGGDLFGLWKDERTIIIQQFIGPGKKCKRTTTSFHQDIEYLHRVGSLITTEEGLCNVGEWHSHHQIGMPEPSAADHRTVFSNMPHLGLERFVLFIASIGGKGSSGKKRSHDVELDDIKLQPFLFLGSTQQVVKGDIKIIPGSNPHRLNEKAENEIKKGKASPPLKHREEGSGPRKPEKNKREEKSEKPKIVPTLKQQAKPRVETHGESGAKPPAQSSSDDERGGGKPQDDQQPRRRDQGQKTASRNREERGNQTQMRDGFNNENQSPNTSLAAPTGYGSQSPPTQSPPQRKHVRDASSQFGTAQAHGRGIQMNMPPTGGAYSSDQSPQRASYTQQTSQRSPRERGYGAQHTNQAQAKYCSEWVPTETMCAEGFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGR4</accession>
    <name>A0A6S7HGR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Adhesion G -coupled receptor E4P, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A086078</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004856">
        <property type="protein sequence ID" value="CAB4004284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGR4"/>
    <dbReference type="OrthoDB" id="5959886at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13952">
        <property type="entry name" value="7tm_classB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053231">
        <property type="entry name" value="GPCR_LN-TM7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001212">
        <property type="entry name" value="Somatomedin_B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45902:SF1">
        <property type="entry name" value="LATROPHILIN RECEPTOR-LIKE PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00002">
        <property type="entry name" value="7tm_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00249">
        <property type="entry name" value="GPCRSECRETIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50261">
        <property type="entry name" value="G_PROTEIN_RECEP_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00524">
        <property type="entry name" value="SMB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50958">
        <property type="entry name" value="SMB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4004284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="848" mass="97084" checksum="B8B42AB26BA6097B" modified="2020-12-02" version="1">MQCSGNRTTFKKREHKIECQCDNACYQTFSDCCPNYESTCGSQNALGHAYLDKDVWKCVEFKQPLNLPCKNIGLNGVWMIQKCAADWPVDDTKHRCENAPTDFSYPVEDFIPVVGVNTFTYRNLHCAACNGIKEYETWRIEVFSYLTPPDEFGLDLKLQFAISIGGWLESIYPVFDHPKRYCLGSHLINSCNNTGNISYNNDCVNGPVQVVSTGDYLYFKNPACAVCNGYLEVTKWKAKQVCVKPKNLKEGIYRFYFIIRKPDGNETFRGTRSSCPYGEVGTMYNSRLGFCENRWPAIIDASGELANEFLVFLSFKEVSTLEGRYTSRKTKENYFKSALTANMSLLASQTSEIAFHIQDHVDRFKVATFRVTITPYQGLILANQHKLSHFSGENIAFLKLINPLNINENFTLSWKEFTFTVLKVVSRQLSCHDGHKFQSYTSDVRLKLESGNYFELKGEPPRHKDLTLCHKLFISHCTRGTYVPLPRGEYTITHNLTVLHNTTMRAYKFGDYLINKNSNSHPSTDDSNSIIPRNATISICLSHQATETADKEYSRSTRIGVRVVTFISFSVSIICLSLFLITFGLFKELRNLRGMNLMNLTLSTFLSHLIWLISTAYIEDETLCIVFATLDHYLFFASFLAMTIISYHTCRVISQQFCEKLLPTISRWILFKYSTFVWLTPAIFVAICGALDDTETFSVDYGTKCWLGTTNAMFYLFLFPLAALILCNVYIFIRASVILSLHDKDNNTIQGQEGRQNLLFSIKLATLVGFPWLFVFFGMLFPDEQAFDYLFAVFMCLQGIYIALSYFFNQSTFELYKNRWNANKREDKSFHSGCVSAVFEMSFSQNSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIN3</accession>
    <name>A0A6S7HIN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A004851</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004637">
        <property type="protein sequence ID" value="CAB4003467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIN3"/>
    <dbReference type="OrthoDB" id="5950252at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd22343">
        <property type="entry name" value="PDDEXK_lambda_exonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051703">
        <property type="entry name" value="NF-kappa-B_Signaling_Reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034720">
        <property type="entry name" value="Viral_alk_exo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46609">
        <property type="entry name" value="EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46609:SF8">
        <property type="entry name" value="YQAJ VIRAL RECOMBINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01771">
        <property type="entry name" value="Viral_alk_exo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4003467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="702" mass="79240" checksum="79BF94F9F7BE520F" modified="2020-12-02" version="1">MAAENICADVRLDDFTVELKPEDIPGASVNDKDIGKLNINQLKFWLKCRRVKQGGNKKELFGRVCNLNAMPEVREKVFDPDPNKAFTKAKLAKLRENGINCSNAEVENDASASLGKFPSDDSAFNKDFSILPVFVPTDTLDHTQKCGKSTKKSVDGDAIAEMSSSKGLRMVSFVHDMEVSKAGEGDVVYLRALCWAFYRKCVKYKVRMIVNPRGSPKIVAAECDKICPAGRSGCCCHVMAVIWKLDEMSRNSKLQKPTQDDRACTSKPRKWGIPSRREVEHEAVMASKLVKPRHILDTPGRKRRGVFPTLFDPRPSKYRKLSPESVEKFRDNLSATNPSIPFAKIAKMTPNSNDIILVDSIVGLIAKGSVLDLQLKDFSNKTNESKQSAQGKSTSVLHPKALMNSNVSSNTFSKTHDTSKSFDTAKNIQEISQGKYHIISPPKQQPLSLDEISERCKKIKCKLFVSENEIKKIEKETRGQPDNPKWFAYRFGRVTASKCHRVACPHKSSTSPSKIVKEVLNYNPSVQTNAMRDGIKNEKLAVTDYVKKMQQEGHCDLKVEDCGFFVSKHHGFIGASPDGLVTDPSVENPLGIIEVKNIIVKDSEDLSLALVKKSICKKDGMVNKRHMYYYQMQQQLYVVNRTWCDFVVRASNGELYCKRVPYDPKWWIEKFANLELFYDSYILPELAYPRLRDGLDRYDFSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLH5</accession>
    <name>A0A6S7HLH5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Cilia- and flagella-associated protein 52</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A008848</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme. Important for proper ciliary and flagellar beating. May act in cooperation with CFAP45 and axonemal dynein subunit DNAH11. May play a role in cell growth and/or survival.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Microtubule inner protein component of sperm flagellar doublet microtubules. Interacts with BRCA2. Interacts with the CCT chaperonin complex. Interacts with HSP70. Interacts with AK8. Interacts with CFAP45. Interacts with DNAI1. Interacts with IQDC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell projection</location>
            <location evidence="1">Cilium</location>
            <location evidence="1">Flagellum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the CFAP52 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002680">
        <property type="protein sequence ID" value="CAB3995527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLH5"/>
    <dbReference type="OrthoDB" id="6252103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031514">
        <property type="term" value="C:motile cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000173">
        <property type="entry name" value="Cilia- and flagella-associated protein 52"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000207">
        <property type="entry name" value="Cilia- and flagella-associated protein 52"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:001320">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055439">
        <property type="entry name" value="Beta-prop_EML_1st"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050630">
        <property type="entry name" value="WD_repeat_EMAP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13720:SF14">
        <property type="entry name" value="CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 52"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13720">
        <property type="entry name" value="WD-40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23409">
        <property type="entry name" value="Beta-prop_EML"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 14" id="KW-0282">Flagellum</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="EML-like first beta-propeller" evidence="13">
        <location>
            <begin position="53"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00046056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00047117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF23409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3995527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="615" mass="67951" checksum="12E6C8F6BD79F2FF" modified="2020-12-02" version="1">MEDSAQDFAKLELVSTIGFAGCVPGGLIVHPDQHHIIYSVGNTIIVQHIVSNKQRFLVGHTDNISCIAVSKSGRYIASGQVTHMGFKADVIVWDYETCSKYCLLTLHKVKVEALAFSPNDKYLVSLGGQDDNSVVIWNIDKKEAICGAPAAVPSSGTSYVVAFSNHNDELFVTGGNKTLRVWELDLPNRKIRPTDCNMGQLKRIIKCIKVAEDDQSFYCGTTSGDILEVNMKTRLFRHYGPQKEKFSLGIQALQILKTGDVLVGAGDGTVALLKSQTYKRIRTAKVDGGVTSLTLRGAGHQFFVGTQISQMYRFNLSEFSSELINTCHYEKVYDIVFPYGYSDVFITSSKNDIRVWNTNTSKELLRITVPNMDCNAVAVTVDGKSIISGWSDNKIRAYSPQSGKLIYTINDAHNKGVTAIATTNDGRHLISGGGEGQVRVWSVSAVKHKMEEAMKEHKGSVTCIKVRKNDEECVTASTDGSCIIWDLKRFVRNQVIFANTLFKAICYRPDECQIITAGTDRKIAYWETFDGSQIRELDGSKSGSIEGLDISSLGDYLVTGGADKLIKVWKYEEGAITHVGEGHSGDITRLKICPNRQWIISVSADGAILRWKYPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNB1</accession>
    <name>A0A6S7HNB1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Ephrin type-B receptor 1 isoform X4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A023729</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005338">
        <property type="protein sequence ID" value="CAB4005869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNB1"/>
    <dbReference type="OrthoDB" id="4062651at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030425">
        <property type="term" value="C:dendrite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005005">
        <property type="term" value="F:transmembrane-ephrin receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007411">
        <property type="term" value="P:axon guidance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050793">
        <property type="term" value="P:regulation of developmental process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000802">
        <property type="entry name" value="Ephrin receptor 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001512">
        <property type="entry name" value="Receptor tyrosine-protein kinase erbB-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.10">
        <property type="entry name" value="Tumor Necrosis Factor Receptor, subunit A, domain 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027936">
        <property type="entry name" value="Eph_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050449">
        <property type="entry name" value="Ephrin_rcpt_TKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011641">
        <property type="entry name" value="Tyr-kin_ephrin_A/B_rcpt-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46877">
        <property type="entry name" value="EPH RECEPTOR A5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46877:SF14">
        <property type="entry name" value="RECEPTOR PROTEIN-TYROSINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14575">
        <property type="entry name" value="EphA2_TM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07699">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00109">
        <property type="entry name" value="TYRKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01411">
        <property type="entry name" value="Ephrin_rec_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0829">Tyrosine-protein kinase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4005869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1230" mass="137698" checksum="ACC3461EB8F1A006" modified="2020-12-02" version="1">MFRAECSGCKNQNITVYILRKALPKETKDKEAVGILKNLTLVATLGNQVINTARFHEFYFEPKASQFFLVFLSAGSCTRIQDIRLSYFICDNNISSGVKLSRTVAPVNGSQRVNVSCPVNTLNPGNEEAYGLCSSKGIWEIKSPCMCKKGYTLNTNAEGCIECPINTYKDTVGNGKCTPCPRNSGRNLNGQVQCVCYDSFYRFQGENHIYPCYNCKAACMSQETPIYRVPPPVKDVKFIDKTETSITLQWTPPPGQGVMYDIKCNKCPSGSDSGPCVVPCGRLVMFKPSQNNLTRTSVTIQGLDQDTEYEFVIYSKNMNSLRINRTNWKSAMKKIKTEGMSKSGGLPAAVIIVVPVVVTILMINIIIIFVICLFKRRKTSELYIHVYLDRLNNMSLEIDISLLYVDPITYDNPERALSEFAKQLDRNLIKFGDIVGGGEFGDVYKGEMKLPEQPATKVAIKTLKPRASHKNRTDFLIEASVMGQFKNLNVITLEGVVTKSTPSLIVTEFMENGSLDKYLKENDGMLNPLQLLGMARGVASGMEGIGSLLFSFKDLAARNVLVNDNLACKVADFGLSRDLDNSEDSEYESQGGKIAVRWTAPEAITDLKFSTASDIWSYGIVLWEIMSFAERPYRNWRNGEVLKVRIASDVNCFAICPKTVHELMKECWMTDGTKRPPFKEIVRIIDVWIKYPEKLNEDYINVRRIEPLDNSTFTSVNNCLINIHGQHTLSTCRDVIIRNPSLRGSHEILRRVFSPKPVGEVTENLSDHAALVVSWEDQMRLDREAAGPFMRDVNLLRALLLHIIIVKGRHVQCQKFLKEIILTIHEIFKTGSLKSDVIVLSRHGILVVSEWCTECPVNTYKDTVGNGKCTPCPRNSTRNLKGQVQCVCYDGFYRFQGENHTYPCYGVPSPVREIKFIDKTETSITLQWTPPSDQGVMYDIKCNKCPSGSDSGPCVVPCGRLVMFKPSQNNLTQTTLTIQGLDQDTEYQFVIYSKNMNSLRINRTNWKSAMKRIKTEEMSKSSGLPAAVVIVVPVVGIILMIIILILVICLFKRRKIRQYRASQRLRGGVIPLMPGVKNYIDPTTYDNPERAVSEFAKELDRNLIQFEAIIGGGEFGNVYKGEMNAHSGQPPTKVAIKTLKAGASSKDRTDFLIEASVMGQFKNLNVITLEGVVTKSAPLLIVTEFMENGSLDRYLKENDGVLKAPQLLGMARGVASGMEYLAGMHFVHRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNQ0</accession>
    <name>A0A6S7HNQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A034358</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005147">
        <property type="protein sequence ID" value="CAB4005273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNQ0"/>
    <dbReference type="OrthoDB" id="5948131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="357" mass="41306" checksum="4A7A0352A9F552B5" modified="2020-12-02" version="1" fragment="single">MSERGNFRPISILVILSKILERHVFNSYLLYLTEHEILSDYQHGFRPGHSCETSLNMIYEYLVNNIVNGEINGVLMLDFSKAFDLVDHNILLQKIHAYGATDLTLKWFASYLEGRTQQEQINEVLSEPLTIITGAPQGSILGPLLFLIFINDLPSFLTTSHPSLFADDSTLLAHGCELPDIKASLSTDLCITSNWARSNHMALNFSKTKFMKIYSKRKYSQLDYDSILYKDFWIEEITSGKLLGILLDNNLSWDNQVDKIYKYLNSRLYLFKRICPALPLKCRIKFYYAFIYPHLLYGITIWGNARNELIDPLLKLQKRAARLALDESMSTPSVNLFRKLEWIPIYNLIKMRKILLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQ71</accession>
    <name>A0A6S7HQ71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC100197852</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019549</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005472">
        <property type="protein sequence ID" value="CAB4006307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQ71"/>
    <dbReference type="OrthoDB" id="5985543at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="544"/>
            <end position="571"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="624"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="552"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="624"/>
            <end position="651"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="660"/>
            <end position="675"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="675" mass="76670" checksum="81092C4E112C77D7" modified="2020-12-02" version="1">MGDKPNSQPLWEDLTYVEFDNFLSKCASLEQTKRNLLSASASIFDPLGVIAPVTARIKTIFQLLCKDKLNWDDLIPPAFASIWNKFLEELKSLREDVGLLVGPSVLLSQPSAYRGERSDTLCDQTSLGGKVVEEDSHSSDVLFNNATRNDIPGETCSLSDVIDCTRYSSLNKLVVTTGYVIRFLNNLRKRTKNHGNLITENVLTANEYEQALHMWIKEEQSLIKGQSNFANVCASLNLFEDKDGFLRLKGRFANSNLRYQDQHPMILRGNESYFTQLVIWDAHKASMHHGVESTLARVRSNYWIVKGRKSVKEVLRKCVICKRYQGKPMCAPASPDLPQCRIDHSGFAFQATGLDFAGPLFVKDGSETAKTYILLLTCATSRAIHLELVYSMSSDGFLRGFRRFVARRGVPDVIINDNFKTFKSVEVKRFMSCQGIRQQFILPASPWWGGFYERLVRTVKGCLKKTLGRAYTTFEELQTILCEVEVAINNRPLTYVSEDDLDEPLTPFHLMYGRGYCNRMKNTDTILTANLGQYKQRLKHLKHSAAETNEPLPEKENQYARSDQDEPAPRAQWRIGRVLQLVKGRDGLVRGAKLKVLSKGGAQSSVHRPLQRLIPFEIVQDDVDKHEGDDNDKNAEQHNTTETESRADERKGSRRPTRKAAIDGENLRRIREQYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HVT6</accession>
    <name>A0A6S7HVT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ATP-binding cassette sub-family A member 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A061746</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005815">
        <property type="protein sequence ID" value="CAB4007510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5978608at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005319">
        <property type="term" value="F:lipid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03263">
        <property type="entry name" value="ABC_subfamily_A"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000298">
        <property type="entry name" value="ATP-binding cassette sub-family A member 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC2_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026082">
        <property type="entry name" value="ABCA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19229:SF250">
        <property type="entry name" value="ABC TRANSPORTER DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19229">
        <property type="entry name" value="ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12698">
        <property type="entry name" value="ABC2_membrane_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4007510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1504" mass="167982" checksum="A5B007DC1892B862" modified="2020-12-02" version="1">MQKVGTLMDIRVTPGTWKSEREMIGIVSEAETEYYGAVAFGDTSRVLNGTELPMDLRYVIRLPAQRWLTDRTYPFFRLREPQKSTNSLYSSRFVFLQYALDASIAQTISNSSSPHAFILKQFPYPTYRKDYFNTTVAGFLPLLLTLAFIYTAMMIVKELVYEKQCRLKESMKMMGLSNWIHWLAWFTKCFLFLFISVSLVTAILSGAKILEHSDGSVVFVFLLLYAVASIFFCFAMSVVFSNAVLSMLFSGALWFVAYVPFASVSNDNTYEGLSSASKSGICLLVNSCLGIGAKSFSSYEERGVGVQWSNIADSPSPDDDFSLAQVFLMFIVEIIIYGLFAWYYEAVFPGDYGIPHSPWFFVTKSYWCGTSTSKVDSSQEPAALSNLHLKNPDYEEEPTDLEVGVSVCDLRKIFRSSVGKKVAVDHLSFNMFKGQITSLLGHNGAGKTTTMSILTGLFPPSSGTAYINGYSILTDMERIRDSLGLCPQHNVLFDKLTVREHLKFFVNLKGKFGPEAEQEIDSMIVDIQLADKANWQSRLLSGGMKRKLSCAIALIGGSEIVFLDEPTSGMDPYARRATWDLLLKYKAGKTIILTTHFMDEADFLGERIAIMADGQLRCCGSSLFLKSRYGVGYRLTLVKAADCNVTATSSLVYNHVQDARMVSDVGAELAFVLPSQSSVGFEPLFRELEEGKEKLGISSFGVSVTTLEDVFIKVGEGMEHTVDEVREAKEADTHSLDILADPTLQLDHSELMTGISLKIHQFKAMFMKRLLHSKRNKAALFTQFLLPLMMTLLGLAIAKSVKPISDEPSRMLGFKNLSVDNKLTNSMFASFSSKSNLTFQKAYSYLEEKQKNKLSDITNELRTLKNENSGSTIYIDKENKTAMDPNNCCEMPFLIINEKCRKQLAPNNRKCTPKGYKECVDKCLNEDSSSAVCPQHPNQTKPDEWETIFAEHVLRKSNPGEYFFENIAGFLITDDKKTNQLVYNTWFSNEALHTIADSINVMSNLILRSINDFYEIKAYNHPLPYSTEGKADNVIGDFSALLLAIFINFGMSFLVASFITFLILERESKAKHIQFISGVDTVSFWSATYLWDFINYMIPATIVIFLILMFQLDAFSDTETVGSIYFLLILQGLSAIPFVYCFSYIFKTPLIGYSITVLVLAFLSLGLLIAVFVLDASDEADAADVLNYISLLIPTYAFSSSFLELNKNYGLRKQCTASKGAEIYCANLGFKYTDHALNWEDYGVGKQCLYMAIEAVVYFALCLLLQVNFFVSARKQDHLANTTSDGTPEDSDVAGERDRINNLNLDTLEQEAIVLKNLTKVYPGATRTAVDNLSLGVTKGNCFGLLGINGAGKTTTFGMLTGEFPISAGTAYLDGYNIQSQLREVQQRIGYCPQFDALIGSLTGREMLEMYAHLRGIPYDKMDDLVQHTIESLNLVNWADKMCGTYSGGNKRKLSTAIALVGNPPIVFLDEPTTGMDPGARRFLWNYLTSVIRAGRSIVLTSHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZI1</accession>
    <name>A0A6S7HZI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A075657</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006651">
        <property type="protein sequence ID" value="CAB4010009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZI1"/>
    <dbReference type="OrthoDB" id="5985998at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="155"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="464" mass="52108" checksum="48DF0D3E96BEE5BF" modified="2020-12-02" version="1">MSDREPTDIEQPTPVASGQLNLTEQVFERFKSYLGQKVSNLTTNLTAKADSRSKRVERQTTGQQLKLAATRISFFSTPSYKTQSKKKKIKHADKSDAGWLAVKECEAEDLASDSDDQKRIKKAQASAVRKKAKSRQAKPINQAVAFLTQPTPVSGVENEGIGPKTVTSSTGKGRHEPVNAVGLPNVKGRLKSHLAVWTDIKAPDFIIDCIREGYKIPFYSTPEPATFPNNRSAHVHADFVSEALSELLSTCRIVETRKEDLVVINPLSVTTNKSDKKHLILDLRYVNKHIYKQKIKFEDWRTAINYFGPGTYFTNFDLKSGYHHLDIFSEHQSYLGFSWPNPDGSTRYYRFTVLPFGLSSAPYIFTKLLRPIIRHWRGLGISTTIFLDDNIDMENSPEISHEYATIIKSDLCMSGLVANDEKSTWAPTQNITWLGLDWNGVNGTIAIASHRLEKLNSAITTILN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2Y2</accession>
    <name>A0A6S7I2Y2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Excitatory amino acid transporter 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A028891</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003925">
        <property type="protein sequence ID" value="CAB4000782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2Y2"/>
    <dbReference type="OrthoDB" id="5877963at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015501">
        <property type="term" value="F:glutamate:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005313">
        <property type="term" value="F:L-glutamate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015175">
        <property type="term" value="F:neutral L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="entry name" value="Sodium:dicarboxylate symporter"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050746">
        <property type="entry name" value="DAACS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958:SF63">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958">
        <property type="entry name" value="SODIUM/DICARBOXYLATE SYMPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="Proton glutamate symport protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="722"/>
            <end position="740"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="752"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="856"/>
            <end position="876"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="882"/>
            <end position="905"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="299"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="299"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4000782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="983" mass="108360" checksum="BFA35EB11A2BD4F6" modified="2020-12-02" version="1">MAEYLQIFNLDLQARIHYASNDSRSHIAEQVMRSLNEATGDGRSIPIPRLPLFDGLSKGQIYGLTQDEFKSLEQQRQKEISIQCAKDIANRYEGKKCMGTTIHALTPACDVSDSFFFDDEFIQRFHHATPSMQEGCAGSEYYSKQLKFVEEHYILYDGGIEGIRNGCQVSGKMCEIHRNVLGCDWRGAPVNRVPAPVPSDFKDEFQYTIPDLSFVPGKITSIPNVDEFCPRVKIEETVKEIGPLDIQHSNTINDDGSISKFWNDNNDTLNKMLGSVDEITEKFTGEDLRPAVEYEMKKRHQQMVKAHTKKTKRASDKEKEMSKSVYDIDWADLIKSGSLEKLYVSQLDKYLNKVAGFSKMQISEKGFTKDKKAEAIKRHFYQEGKGNSAPIITTTSSNPTSTVPAETTTATDAAAVPPSTTTTNTFAAAATASRTFSATVHSASSFNVLPWGGDLHVQGRTIVLVNTCPIDNCLMIFYLLFKESQEIKNLFTSSYELVAQTLCRCFDLIDNGEYGKAKLEWLALNPGMHPAASGLLNAWANEENLFTQHLMPFMRSCASSSCNSPMCPLPGVHLRWGNTVALKVTQHAYCDGIRTQSNRQFPDGAPKFLAINVEFLVTAGVLEEKDILDNIQFLGRRNMVPDNIVEASFSSTGTKHKIIPTEYKFVNKTTAGVKSSAKNVSSFLKTEIINPWGMSSDNVQVIKGENAISEYDGQEKYNSANILGILTFSVVCGVILHTLGEEGKPLVSWFDCLFNGGLIHVVVVLPVIYFTLLRSNPFLLLSRVSKALLTAFGTASSSATIPLTLNCLEKNHKLDPRVTQFVLPIGTTVNKDGTAIYIAVAAIYIVKIYHGNASNFGSAVLICFAATLASVAAAPITGSVPIVTRTIVLQVIGISSADIALILAVDWLMDRLTTPTNVWACCVACAVVEHLSRDELEPTVGVCQTDHACSNVSAETNSVAIDIVEEEEGNIEKRQDIQNIHRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6K3</accession>
    <name>A0A6S7I6K3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">E3 ubiquitin- ligase DZIP3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A034385</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007605">
        <property type="protein sequence ID" value="CAB4012707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6K3"/>
    <dbReference type="OrthoDB" id="5953391at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041249">
        <property type="entry name" value="HEPN_DZIP3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056884">
        <property type="entry name" value="NPHP3-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058056">
        <property type="entry name" value="WH_TANC1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10039">
        <property type="entry name" value="AMELOGENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18738">
        <property type="entry name" value="HEPN_DZIP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24883">
        <property type="entry name" value="NPHP3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25521">
        <property type="entry name" value="WHD_TANC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101908">
        <property type="entry name" value="Putative isomerase YbhE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="DZIP3-like HEPN" evidence="2">
        <location>
            <begin position="39"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="Nephrocystin 3-like N-terminal" evidence="3">
        <location>
            <begin position="242"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="TANC1/2-like winged helix" evidence="4">
        <location>
            <begin position="519"/>
            <end position="617"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF25521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4012707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1222" mass="140292" checksum="405EE869A98DACC7" modified="2020-12-02" version="1">MTSSVLESSEEKINGFKLMRLIVDGGTEVLRNIFLSIHPGNLHAVLSTHCHTLYPLFKTKNIITQPQWDKLYPPPPRIPNIQEFDITLLVILLRNICGLSPPSTGWNVMPSSTDNSREANIVRIRLFRNNFFGHVPGIDVSRLDFEAYWVEVGSALRSLGLNQAEIDRLKAEECGEEEVKRVRKEWNESEKEVLIELGRLGKKIDESLKQVKSSTEGILCECLNEHDFKDEIQSFYVNYTKGTREWVFDQVSKWLNNKSSYNRAFIVSGQAGMGKSTIAAVTCTRFPEFFGACHFFQYNNSRYNNPKFLLQSLASQLCHVIPEYKQNLTNNLSGNKAQLLDHQNIEGMFSVLFQEPFSKISDPGKHFLIVIDALDECRQEEKHKLVDFIATYFHKFPMFIRFLITTRSETDIARKFQELNPLFLEPDDERNLKDLRHFFEDKLKTMSEYVQREELVEKLVKKSEGLMLYASFLCKLPENGSIISNSENLPAGIEEIYNRYFNRLESELRNLGIDEKQFLKFLSVIAVAKRPLPLALLERLLSSDKDLSIAGRTLRKLINCLSSVLVIKDESVSFFHKSVKDWLVITNHDFTIIETYGHRTLADICVFQMQTLKQNEVSSTFDLAIVYALQYGTQHVLEAEIKDVYFLTELINHVTDLEVVHAGVCSDIYTTLSNLSSLDSCNMHNSSICEETQRTIRTLIFIIRKFIYILKDVPQSFLQYVLNENDDVLSPKACALLMTRYRGLAYFESEDGKENIEKASIGRILTSRQVLDIDISPSEDFLICGYEKGVELFSLSDFKLLWKIDDFLVERRECACCFCRLTKPHRRIVFHPLKNIIFPGQLTRVLNLKGKFETGMLVCEEIPSKFTNCCFSHDNTKMITNYDIHLTVWNLLENKKIVSLSCRSELFSILFSANDRFIGTTNIDELCVYDTENSYSMVSRCCCGNIKVLVSPFHLDSWYCLVVKSVLRRKIEIVKYDLTVKPVREHFFMSMMPTNARAAAEFQAVMESEDRSWLVKVGCGSFFILSNGNVLVSSNHESEIKLFRLNELIQNSKTMQRPNLLLSLRYAVSCSVSVDGRYVYTHDSRGTLRIMKPQSVTFKILGLKKDNLIPFVPVANGVFFCGEVRNPLWTLFVGKNEFFAGIPELWNSEVTQRLASFPELTGTSHCLSVAQDLVACIMELQQRKDENELSECSCWMHSGSINIPIRSFQNEILTAFQFSVTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IA30</accession>
    <name>A0A6S7IA30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086811</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008363">
        <property type="protein sequence ID" value="CAB4014586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IA30"/>
    <dbReference type="OrthoDB" id="7698230at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15892" checksum="9A38AF2DEF4D0221" modified="2020-12-02" version="1">MAYKPPDSFDFSKGETWPNWIRRFERFRTLTELNEKEDITQINTLIYTMGDQAEDILNSFKLNETQFNRRVQNEHESVEEFITSLYMLAEHCEYGNLHDQMIRDRIVVGLIDANVSQKLQLDPDLTFKKAQDIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBX0</accession>
    <name>A0A6S7IBX0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010286</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004736">
        <property type="protein sequence ID" value="CAB4003831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBX0"/>
    <dbReference type="OrthoDB" id="10065482at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="17120" checksum="67E6C9D58BE427B0" modified="2020-12-02" version="1">MLKFSSGKFVAAYLDKEFTTLMLYCNADIFNCLGQDACIVLDVALTCSGCEAILEGFYSVIKVHAKSRGQSNKVLKERAVVDWALPHLLACPSTITKIGKLYTSGNQKLGILKHQSAAFFNVRERAARKYNVSKVVDRHATEPPRCQFLVVEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICQ5</accession>
    <name>A0A6S7ICQ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Eukaryotic translation initiation factor 3 subunit M-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056862</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008601">
        <property type="protein sequence ID" value="CAB4015147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICQ5"/>
    <dbReference type="OrthoDB" id="10267031at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21043" checksum="4429FB31510F38B2" modified="2020-12-02" version="1">MDPVLPVFLGIAVQEQVGELRAYLKSNGVALEDKGPDDLSENLSEIFSVCGQCMKSCSEIDMEGFLNSVLSLIFALTEKRDEVIRAFVQCLVEMPNYAALRHRLLNVLFCGLNKLDPTRYNVYCGQLELASKSGLLDMVTTDIDQVKLWLNQWDDVQKSRKIYRLLHDAFLSNEQRCGICYIILNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICT6</accession>
    <name>A0A6S7ICT6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016776</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008616">
        <property type="protein sequence ID" value="CAB4015187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICT6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="86" mass="9660" checksum="A5FC237A7D67A967" modified="2020-12-02" version="1" fragment="single">MSKAHDGRENCTNDLKDDDDEPEVSISEYEEQTVAVDNVEIAIEVSESLIEVVEKNVTPVVSSDVVAQQKDLWRSGRIRKPVNRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDJ4</accession>
    <name>A0A6S7IDJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062434</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009392">
        <property type="protein sequence ID" value="CAB4017075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDJ4"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="52" mass="6173" checksum="52257637F5C21DC6" modified="2020-12-02" version="1" fragment="single">YKIYEFNRKAKIGGGVCIYIKECLKIKIRDDINKEHLSENIESIFIEIENIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IMT9</accession>
    <name>A0A6S7IMT9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">U2 snRNP-associated SURP motif-containing -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081811</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010967">
        <property type="protein sequence ID" value="CAB4020464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IMT9"/>
    <dbReference type="OrthoDB" id="377209at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd12223">
        <property type="entry name" value="RRM_SR140"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.790">
        <property type="entry name" value="Surp module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006569">
        <property type="entry name" value="CID_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008942">
        <property type="entry name" value="ENTH_VHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051485">
        <property type="entry name" value="SR-CTD_assoc_factor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035009">
        <property type="entry name" value="SR140_RRM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000061">
        <property type="entry name" value="Surp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035967">
        <property type="entry name" value="SWAP/Surp_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23140">
        <property type="entry name" value="RNA PROCESSING PROTEIN LD23810P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23140:SF0">
        <property type="entry name" value="U2 SNRNP-ASSOCIATED SURP MOTIF-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04818">
        <property type="entry name" value="CID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01805">
        <property type="entry name" value="Surp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00582">
        <property type="entry name" value="RPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00648">
        <property type="entry name" value="SWAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48464">
        <property type="entry name" value="ENTH/VHS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109905">
        <property type="entry name" value="Surp module (SWAP domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51391">
        <property type="entry name" value="CID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50128">
        <property type="entry name" value="SURP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="57"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="397"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="397"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4020464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="560" mass="63887" checksum="F4FEFBC03E7498E6" modified="2020-12-02" version="1" fragment="single">VEEANCADVFEEFVASFEGAASKGKTFVRGNVVNPGQAKEAASEKAGQLYTLKASIQQATSTKPALPGKQKESLKKRKEKEKKKSNLELFKEELKKQQEEREIRHKLKTGELDDIPRDVLDSFPTLLSAPAKEEPYSYGSYDTGDPNTTNLYIGNISPEMNEEQLMKLFGQYGPLASVKIMWPRTEEEKSRNRNCGFVAFMKRKDGDKALIALKGKEIQGYEMKLGWGKAVPIPPHPIYIPPEMQEANKPPPPSGLPFNAQPGKVKDIHNDDAPEIIDMNGISSKTLANAVVKVVIPTERPIVHLIHRTIEFVIMEGPIFEAMIMNREINNHQFRFMFDNQSPEHIYYRWKLFSILQGDSQTKWKTKAFRMFENSSVWRPPNCTSYLEENNKEKEDVIEEVKEEKKPKSETKPSSKSSRKGLLGDRQRDKLENMLRELISERSKIAECMTWCIDHAEAADEISDCMSESLSILETPLTVKIARLYAVSDVLYNCTAKVRNASFYRKSFETKLPEIFQNLNATFQAVKTRMKAEQFRVINLLVIFHLYQFVGFIQALHGSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IR84</accession>
    <name>A0A6S7IR84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon-like family member retr-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033897</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011620">
        <property type="protein sequence ID" value="CAB4021784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IR84"/>
    <dbReference type="OrthoDB" id="5988199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="591"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="591"/>
            <end position="611"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="623" mass="71419" checksum="95557114F098BA86" modified="2020-12-02" version="1">MLLEKNTAWHWDVQQQNSFERLKQTITNAPVLKYYDVNKHVTIQVDASPDGLGAVLLQDERPVAYASRSLTQTQRNYAQIEKEMLAITFGCERFHDYIFGKKSVTVHTDHKPLEFIFKKPLYHAPLRLQRMILRTQKYSINVQYKPGKELLIADTLSRACQQSNSSINELTRDFEVNVIDLLPMSKEKVQQLQSATEVDQDLKELNSCIKEGRPTDKSKVPEGAKPYWNYRDQIIEQAGLLFKGNKVIVPRVLRSETLKIIHNAHLGIEKCKRRARDILFWPGMNAEIEDLVKKCQVCQDHQVRNMREPLHPLDSPSRPWEIVATDLFELDGSSYLILVDSYSGFFEIAQLTGTKSSSVITHCKSQFARHGILDTLISDNGPQFASHEFATFAQEYGFQHTTSSPHFPQSNGLAERYVQTAKNLLKKAKQASTDPYLALLAYRNTPVNEKLGSPTQRLFGRRTKTTLPTSTTLLEPKIIEPKIVKETLHKNKEKQKQYFDHHTKELSVLQPGDNVRYETNTGLKAAVVIEKRKEPRSYMIRTSNGFVLRRNRKHLYESTGMNRLENCDLDDDNITEYQPPHQIPIAVGRQQNGLEPGQAPQTPQLYTTRSGRASRKPERLQAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXJ0</accession>
    <name>A0A6S7IXJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A089004</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012860">
        <property type="protein sequence ID" value="CAB4024136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXJ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043635718" evidence="2">
        <location>
            <begin position="23"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="308"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="310"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="360"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="377"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="534" mass="55127" checksum="267765E4B072B673" modified="2020-12-02" version="1" fragment="single">MKITATLACVLFTFGVLTICNGRSIRSAENMPHANVTTEVKKVEDMVAPPPVTTEADTNIDADSDLDEDADLDEDADLDEDADLDEDADVEDVDADSENAADDADEDGETDVDSDGDAEEDADHDDVDDLDNNDDYGHDDVDDDDDAGDDDDDAGDDVDGDDAGDDAGDDDDDDDNDDGNDDGDDGNDDDDDDGDDDDDDDDDDDVDVVDVVDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDDDDDDSDADDASEGLLSNSEGVEMAPPMTNNAAKGDAGVLQWLKSIIKKALVGKKSGAGLLVEEPDEAEPAEPAEPAEFEPAEPAEFEPAEPGDIEGPRKNAIPETGGHENVNNAEGEAGGADSASESNADQDADAGAEANDVADDGADDAADDDAGDDNGTDDAADDDGADDDAADDDGGDDDGADDDGADDDGADDDGADDDDADDDDAADDDGDDNGADDDGADDDAADDDGADDDDGADDDDGADDDDGDDDDGDDDDGADDDDGADDDDADDADDDDGDDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXQ3</accession>
    <name>A0A6S7IXQ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018867</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012009">
        <property type="protein sequence ID" value="CAB4022493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXQ3"/>
    <dbReference type="OrthoDB" id="6079678at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13539" checksum="6DADA464526E3E0F" modified="2020-12-02" version="1">MQVGQEQAEKILFIFSIALIMYAQSSADTSSCGEKFSTRMDQDVFSKHRLRSRVIESQPISRPLECYVKCMKNCRCLSYNVCNRGKLCELNSEKKDNNISLFEASDECDYHQYELSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IY24</accession>
    <name>A0A6S7IY24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A057360</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts as a defensive agent. Recognizes blood group fucosylated oligosaccharides including A, B, H and Lewis B-type antigens. Does not recognize Lewis A antigen and has low affinity for monovalent haptens.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the fucolectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012997">
        <property type="protein sequence ID" value="CAB4024375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IY24"/>
    <dbReference type="OrthoDB" id="547680at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042806">
        <property type="term" value="F:fucose binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010185">
        <property type="term" value="P:regulation of cellular defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001868">
        <property type="term" value="P:regulation of complement activation, lectin pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051941">
        <property type="entry name" value="BG_Antigen-Binding_Lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006585">
        <property type="entry name" value="FTP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037524">
        <property type="entry name" value="PA14/GLEYA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713:SF6">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713">
        <property type="entry name" value="FTP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22633">
        <property type="entry name" value="F5_F8_type_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00607">
        <property type="entry name" value="FTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51820">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4024375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="317" mass="35866" checksum="4D6349CF87DD013D" modified="2020-12-02" version="1" fragment="single">NIAKNQPTAISSTWKSQTASKNAVDGNADHFIAGGSCAVTKTQNNPWFRLELQTSTAVYGLLISNTEDKQGNKLQNFEIHIGDSLDQNGVINPKCGNRNFIRRGETKSFYCDPPLVGQYITINIPGIRKILPLCEIAVYDSELTSYRKHGVKVNIWRDLATTDIQQLYNDPKYPGNPDEQRILSTFDYKNMGNYYGGRLSAVYQPLQTGNYTLYAACTDKCEVFLRDWESGGKLEKIISLMKSTRYKVWNQYPAQKSKAIYLEKGKFYELVATVKEARSTDYLTVAVELPSGKFIAPIPAERLFIDTKEVKLRLERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JF55</accession>
    <name>A0A6S7JF55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011233</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016161">
        <property type="protein sequence ID" value="CAB4029418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JF55"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="120" mass="13640" checksum="0D3163AB57EDF4EE" modified="2020-12-02" version="1" fragment="single">DIKNLLTNLELLDLVVSQVWSSIVSKYNEGGDISDLLAEYAKESQKREGHINNVINMFKEEIEKLKHNVPDNTLSDKQKHMIKLEMKVFEDICDTGIRGSSVLNVSDTIDASLFKDTCRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJR8</accession>
    <name>A0A6S7JJR8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018606">
        <property type="protein sequence ID" value="CAB4032686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJR8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="56" mass="6556" checksum="18DD0945A2DE7299" modified="2020-12-02" version="1" fragment="single">MSRRTKTILPVTEELLVPRVVSPEKVQDRLQHYKHLQKKAYDKKSQNLLALKKGDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLY4</accession>
    <name>A0A6S7JLY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cholesterol 24-hydroxylase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018298">
        <property type="protein sequence ID" value="CAB4032307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLY4"/>
    <dbReference type="OrthoDB" id="5950415at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033781">
        <property type="term" value="F:cholesterol 24-hydroxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006707">
        <property type="term" value="P:cholesterol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039983">
        <property type="entry name" value="CYP46A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24293:SF0">
        <property type="entry name" value="CYP46A1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24293">
        <property type="entry name" value="CYTOCHROME P450 FAMILY 46 SUBFAMILY A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19971" checksum="91835E9849BF2001" modified="2020-12-02" version="1" fragment="single">MHYKLSHIEGPPRGNFFLGNLLEIRRRRLIDGNNIHQTLADWSIEYRPMFVIWFFHVPLIVISDADIARQVLVVKNLPKDHFGYKRFQYVYGQRFLGSGLFSDLNRLTWETKRRTFTPLFHRNKLFDGFPTLNSCCDNFLSRLEKYADGKTEISLADEFLLVTLETILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JNV6</accession>
    <name>A0A6S7JNV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TNF receptor-associated factor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A089786</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019970">
        <property type="protein sequence ID" value="CAB4034265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JNV6"/>
    <dbReference type="OrthoDB" id="5984101at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4034265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="24421" checksum="AEE5FD53DD359052" modified="2020-12-02" version="1" fragment="single">SSNPRCPTDGTVLREEQVFPDVFTKRELNGLHLHCTNQGCPWYGTYEALGGHSAVCEHALINCVHFQCNMKFQRSHQGEHLKSDCEYRNVKCDFCGKDVIFASMKEHVDTICEDAPVTCRYCKKDVIRKDIERHERRDCNEAPATCEYQDVGCNHDKTLKRKEQRQHLNDGLIDHSGQLLRYTLAIASQLNDFIPRPEYTGMSQKIQDDITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6I5</accession>
    <name>A0A6S7K6I5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Guanine nucleotide exchange factor DBS-like isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087857</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009167">
        <property type="protein sequence ID" value="CAB4016558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6I5"/>
    <dbReference type="OrthoDB" id="10004999at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051336">
        <property type="entry name" value="RhoGEF_Guanine_NuclExch_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22826:SF211">
        <property type="entry name" value="LD43457P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22826">
        <property type="entry name" value="RHO GUANINE EXCHANGE FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46966">
        <property type="entry name" value="Spectrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0344">Guanine-nucleotide releasing factor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10761" checksum="919B17317C5F2FC9" modified="2020-12-02" version="1">MIKNDNCHSHSIETKCSELQDIHNDLNKKFDERKHNLDKSTEVHESLQQVTKWCNAGVDILVSQPLDRFQSAEGAEKGLKEIDQFLKKLNLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7P2</accession>
    <name>A0A6S7K7P2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058219</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025586">
        <property type="protein sequence ID" value="CAB4039578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7P2"/>
    <dbReference type="OrthoDB" id="6781885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22832" checksum="B029D4A20FEBBDD4" modified="2020-12-02" version="1" fragment="single">SSARPITHGVPQGAILAPLLFCIYINDLPGSIQSCNLDSYLDDSKLYKSFCIYDLEQTSINLEADLQIAAKWCLEHQLLINPEKTKFLVVGSRPMLQNVPTEISLTFLGKTVRPVLLAKDLGINLDSYLSYDDHISKLVSSCMRKLCQINRVKDSFDNETLKLVIETLVINKLLYCSTVWSNTSSNNINKLQSVQNFACRVISG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBK6</accession>
    <name>A0A6S7KBK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cholesterol 24-hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A025962</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029557">
        <property type="protein sequence ID" value="CAB4042147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBK6"/>
    <dbReference type="OrthoDB" id="1470350at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033781">
        <property type="term" value="F:cholesterol 24-hydroxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006707">
        <property type="term" value="P:cholesterol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039983">
        <property type="entry name" value="CYP46A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24293:SF0">
        <property type="entry name" value="CYP46A1 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24293">
        <property type="entry name" value="CYTOCHROME P450 FAMILY 46 SUBFAMILY A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0349">Heme</keyword>
    <keyword evidence="2 3" id="KW-0408">Iron</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="2">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4042147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21321" checksum="35A5BE1D00083A63" modified="2020-12-02" version="1">MDTTGNNLCFTALSIGLNPDVENRLRKEIDTVIGESEEIKAKDIMSMQYLTQVVKESLRLHPPTPALTRRTDKDTLIGSVMIPGDTPIMVNPYAIQTHPDYWEDPHDFKPERFASVENLHPYAYFPFSLGPRRCIAPQLADLQVKLVIARLLKKFKFKLLPGQTLKLAENISFGPVGTVRCTLAFADQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KHI5</accession>
    <name>A0A6S7KHI5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029864">
        <property type="protein sequence ID" value="CAB4042304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KHI5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="12818" checksum="A47DC977FBCF1617" modified="2020-12-02" version="1">MVAVVAVGALGTVGALGAVGALGTVVAVGALGAVGAVGALLAMVAMVAMVAVVAVGALGALGAVVALLAMVAMVAVVAVGALGAVGALLAMVAMVAVGALGAVGALGAVGALLAMVAMVAVVAVGALGAITCPTWVKLTMDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJT1</accession>
    <name>A0A6S7KJT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008981</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020046373">
        <property type="protein sequence ID" value="CAB4046146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJT1"/>
    <dbReference type="OrthoDB" id="7989901at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="28384" checksum="F43FD38056936BCD" modified="2020-12-02" version="1" fragment="single">DKVPHTEEKVLQSEDKVPHTVHKVPHFEDKVLHYEDKVLHSEDKVLHAEDEVFHTEDKVLNTEDKVTHSEDKVLHSEDKVLHCEDKVLHCEDKVLHSEDKVPHTEDKVLQSEAKISHTVDKVPYFEDKVLHYEDKVPHSEDNVLHAEDEVFHPEDKVLNTEDEDKVLHSEDKVPHTEDKVLHSEDKVPHTEDNLLHSEDKVLHYEDKVLHCEDKVFHVEDKVLHPEDKVLHPEDKVPHTEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L8M0</accession>
    <name>A0A6S7L8M0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015769">
        <property type="protein sequence ID" value="CAB4028849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L8M0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="14366" checksum="B2843632C6F47780" modified="2020-12-02" version="1" fragment="single">MKEDPEPLFSDGHPDISNDAPRTKKAIASCCKKETGGKKGKRMRKRGERLSVFDVTQIVQKRSIQSCLELVALAVSQSREGNTALANFVANRGHKCVQEALSLAKEFAEAEERLACSKNTRIQIFIEFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L8R8</accession>
    <name>A0A6S7L8R8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">G2 M phase-specific E3 ubiquitin- ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062369</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020963">
        <property type="protein sequence ID" value="CAB4035343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L8R8"/>
    <dbReference type="OrthoDB" id="6430669at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008737">
        <property type="entry name" value="DUF1758"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05585">
        <property type="entry name" value="DUF1758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1758" evidence="2">
        <location>
            <begin position="57"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="460"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="460"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05585"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="504" mass="56443" checksum="5769457F65F1CAF0" modified="2020-12-02" version="1">MFFVPQTKSYCSGLRIKGHERHRKHERDQKFNHACLQDSVLLQTAKAKVGVGNKKLTTEVRVIFDSGSQRSYLTQRVRNKLQLPTGSTESLRIKTFGECETELTASCETVNLAVGDITGRTRTQVEAFVVPVICAPLGNQEIDRAQVEYKHLSDLNLADNNEGDGVAEIDLLIGADQIGKFFTGKIRRGENANSPIASETILGWVLSGPMPSRKKTTLSSVNFVSTHVLRVAAELPSVENEKQPEELLHPGNFNLRKWATNSPVLMAQIQNDEEVLKSLTTEHLNNTGESSYAKESIGSLEEIETPKEHKVLGMNWDTDSDTFVLKLTKVVQFARNLEPSKRNVLKIAAKLFDPLGLLSPVTVLLRMLLQELCAAKYEWDAVISESNQKVLEKWIDDLETVSSIVVPRYYFLAEERNPESVTLHGFGDASQKACCAVIYICMETDSGRTTNLVASKKIKEERKNEDSKESKQDADIQNEEKPTRQRRIAAINADLKRQSMIDQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LGT0</accession>
    <name>A0A6S7LGT0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024629</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017909">
        <property type="protein sequence ID" value="CAB4031809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LGT0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17657" checksum="EE79C02AEE479566" modified="2020-12-02" version="1">MSKESKMTREVYDAVLLTPGAVGISMASKKLLKESLGAGYLFKMFDKNGYAEEAHRHNIAMENFTAEREKYLEEVTDRRNKIARLRAELAEANSDIKSTNQSLELVRRINELSRKAMPRRPQLSNHYKPSPRMEDYMTIFGLITGGVVGGAAYLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LP16</accession>
    <name>A0A6S7LP16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021760">
        <property type="protein sequence ID" value="CAB4036169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LP16"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="22542" checksum="E4D7FE87A356E3CC" modified="2020-12-02" version="1" fragment="single">ILRLKKDIIFESNVLGWLDCGTSCLEKRTCVAFNFKEGSKENEINCQLTETADHYFEKGSTDDNGWTFYEAVGERTFGCDECLNSEMLIWDPVRPLGCKCPESNYAGHISEQCRYSPFAYLGPLALHFFGDTVNQYGKSTGSPQELESITACFWMSVPEEYLNNHRVNFLSYASSKSSNDFLLVLRPSLDLLMKNKVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQ21</accession>
    <name>A0A6S7LQ21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026702">
        <property type="protein sequence ID" value="CAB4040372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQ21"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="13731" checksum="CF0A652CE4FBF0FD" modified="2020-12-02" version="1">MSMNGTWADAIVVQAVSDAPNCIIDITESALNFNATTIIHPVIHGAKYTKIHIGHIDELHYVSTTMYSANKPKTRQDTSTNKVKVEQAQKLESPKDQISSMSTETESMKRKRCSFNHGNYSMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQC4</accession>
    <name>A0A6S7LQC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060364</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023545">
        <property type="protein sequence ID" value="CAB4037859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQC4"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="188" mass="20860" checksum="AE36C526A19CEA99" modified="2020-12-02" version="1">MDKGNLSGILLIDFRKAFDLINYDLLLQKLAIYGLKESTLQWFKSYLTERKQLVSIGRAPSDLLPVHTGVPQGSSLGPLFFILFINDIPLVNKECNSYIYVDDTTLAKSGTSINTVRSHLQTGADNQSNWASENRMAIHPNKTKVMLIGSRQKLSTINEPLNVSICGTTISQTTCEKLLGVHMDDSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS06</accession>
    <name>A0A6S7LS06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transient receptor potential cation channel subfamily A member 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000276</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030242">
        <property type="protein sequence ID" value="CAB4042502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS06"/>
    <dbReference type="OrthoDB" id="5981116at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="498" mass="56607" checksum="B2BCD16BD04E68F7" modified="2020-12-02" version="1">MGEKEQKIQGLLAVLDMLKSNYVAEDGKEYDCSFLAFDEAAEIFFAFQNKAPPFINTDKNSFTYSLLHAEFGLCVYIIYVKSLNNTFVVLRPDSFGIEVFLDMICAEVKNNTEKTDIDADLDVDKVQGIPSTVDTEWDRKGVRVILAANRSRSQMNKLGIDADNSDDEEFVAKSIEDKSTNHGRRHDLVMYTNRRVKKRDLLNIANYRLARKNKKMIKSATTVYNRSKPRSLRSIQAKKHTGKGLFCTKNPPKAEDIDNENAHYQRADEGEEKLVTEEDSHFVFVRPKAIVGSSGSTWASETIRLRQRHPDLFEVKSTASGESYSVQFRQTCAVVHNDCFLYQGGRELESSLTVSETIECEAEKQVFQKMIQTKIIGAKEKIEKCFQDVPTCEEFHQSIQDVTICCEDILMIIKDLQLPTVKPRWCDLTDAGPGVGVSNFEVKFRDAEICRMFSSDYRIRLHRSRGDSGQGEAERTNSAIGDSVVDGSTIEWEQFKKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LTR0</accession>
    <name>A0A6S7LTR0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ATPase family AAA domain-containing 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A064163</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031208">
        <property type="protein sequence ID" value="CAB4042959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LTR0"/>
    <dbReference type="OrthoDB" id="199596at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031966">
        <property type="term" value="C:mitochondrial membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007005">
        <property type="term" value="P:mitochondrion organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021911">
        <property type="entry name" value="ATAD3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23075:SF0">
        <property type="entry name" value="ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23075">
        <property type="entry name" value="PUTATIVE ATP-ASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12037">
        <property type="entry name" value="ATAD3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="3" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="40"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="40"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="82"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4042959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26828" checksum="C10518CB004D40FF" modified="2020-12-02" version="1" fragment="single">HAKDALDLAQVQETTKQLAKEEKIKEYELGIKQMDIERMRAEQEERRKTMAEEAKHNQQKAQYQDQLARKRYEDQLSQQRSVNDENLRRQEESVKKQEALRKKTIEYEAQLKHQNEMKKLEAELKGKAKIERENRDIRLEQIKVEAAERRQTILESIKTAGSILGTGINTFISDWDRVTAAAAGITLFAFGIYAARQATGVVGRYIEARLGKPSLIRETSRLTAVGAVRHPIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D725</accession>
    <name>A0A7D9D725_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A024555</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000104">
        <property type="protein sequence ID" value="CAB3978317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D725"/>
    <dbReference type="OrthoDB" id="5987580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19062" checksum="E404FAE6BF56004B" modified="2020-12-02" version="1">MAERSEGLPEISCYIHAVSPVKKSNGSSYINCDLQTETQVVRAVCFEVDKKQSLESLANQKSPVKIRNYTISKKYGREDVVITRKTNLIPTVVHYDYQELDKNISISTISHVAGEQLVRVKGEVQQLSSTKTVVFDEVPVKKQQCFIVDPSGFIKLVLYGKHADTLEEGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFD6</accession>
    <name>A0A7D9DFD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006109</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000453">
        <property type="protein sequence ID" value="CAB3982010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFD6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="101" mass="10899" checksum="84D741FA6DF4C97B" modified="2020-12-02" version="1">MKSLFVVLVLVALVMADEEKRFLFGNECSEDSDCLGQCCRGLFRKMCGDYTKEGSRCYHTINPLVCGCEPGTSCKFVHNGGLLGLPAYLCVSDAGEGSGDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIH4</accession>
    <name>A0A7D9DIH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001009">
        <property type="protein sequence ID" value="CAB3986393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIH4"/>
    <dbReference type="OrthoDB" id="6090250at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="22694" checksum="A016D7E58F3E9978" modified="2020-12-02" version="1">MTAYAQAPSRSLKIQILSLYAYELPAQKLQTLHEPYGRLSKWQIKRARAHARNNGPGMEMKKNPIPSSLDNTAADGSNGFNTMEQISERLVHLGIDIQWSQSVIKRLHKAKEYLKTDYKVHCQEDDSLCADHCTMFALSDPGDEAFQVKCAHEHTLVCDNCENLKSTLQELENKLKSNTHFSYTQDIKEAANGRPIFSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIJ9</accession>
    <name>A0A7D9DIJ9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Major facilitator superfamily associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A008035</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. MFSD6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000960">
        <property type="protein sequence ID" value="CAB3986072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIJ9"/>
    <dbReference type="OrthoDB" id="10056177at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051717">
        <property type="entry name" value="MFS_MFSD6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172:SF2">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Major facilitator superfamily associated" evidence="6">
        <location>
            <begin position="15"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3986072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="457" mass="51284" checksum="21C85B82885817A4" modified="2020-12-02" version="1">MVMAIFNIKSVALKWYFFTAASVSVYEEFSHVFMKQFGLNSQQIGISNLGGVQHIFIPLLLYLGDRYRVRNLVIWIVSPLSAISSLLLLLPIVVSLPTCFGTKSISNNSINSTEFVRVQGQNVPWMSSLFLVMIISRSSILFLEGVAYPLASLATITYLGNERVRYGAYYMWRHVGASTLIVGSAIIAWRVRIKICGVDGYGYFASFLIASFFFFSSLLSLPFFKFKYETDRTFNWIEVKSVVLNGHYIYMYILTFHLGACIAFQVFWEFWYLDGLQASPLVMGAAALIRRPLLAVFLFTSCYVIEKIGELNTVCVSFLLFTVAFFALAFTRVYWYVLAVDTLHSAGYGLAKSALTVHFSKAGSKASSGVILGFQSMFFILGVDCGATFFGLLFHAIGVRSTLIIYAGMTAIVLAIFLCYLKFSKHVNEYEKLPVDSDDDVDNSNANDDKKHIKNLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DUU5</accession>
    <name>A0A7D9DUU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037837</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002341">
        <property type="protein sequence ID" value="CAB3993859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DUU5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="14524" checksum="79D36ADDB575A739" modified="2020-12-02" version="1" fragment="single">SILQLLRNIVWPRYGTGSHVRDAKLGEADGTEADHEVVPRLVTTGDGKALEADDTEGSTTGRSDEVGEVKPDNDETKPADAIDVEADEITSLWTGESDKSVPEQLDRLLLVSRGIQDRSQNPNETQESPEKQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXW7</accession>
    <name>A0A7D9DXW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013626</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003016">
        <property type="protein sequence ID" value="CAB3997072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXW7"/>
    <dbReference type="OrthoDB" id="5981534at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19036" checksum="01EC45F3F325763A" modified="2020-12-02" version="1">MNIKPVYNERDVRRLRELFHACETNCRGLKTLGVDESSYATIVVPEILDKLPESLRLTITRGSSAGGSDFLNWTMKDILKALLDEIELREAHESSTTNTSKQEGRKSQFLDGSAAALVNHTTREGKPICVYCLQEHLSQDCKKIQNAAERKQILRRSFHTFVRWVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DY26</accession>
    <name>A0A7D9DY26_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Polycystic kidney disease 1-like 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A087581</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the polycystin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002680">
        <property type="protein sequence ID" value="CAB3995529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="444119at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005262">
        <property type="term" value="F:calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050982">
        <property type="term" value="P:detection of mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.60.20">
        <property type="entry name" value="PLAT/LH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057244">
        <property type="entry name" value="GAIN_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046338">
        <property type="entry name" value="GAIN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000203">
        <property type="entry name" value="GPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002859">
        <property type="entry name" value="PKD/REJ-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013122">
        <property type="entry name" value="PKD1_2_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003915">
        <property type="entry name" value="PKD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051223">
        <property type="entry name" value="Polycystin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046791">
        <property type="entry name" value="Polycystin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014010">
        <property type="entry name" value="REJ_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10877">
        <property type="entry name" value="POLYCYSTIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10877:SF150">
        <property type="entry name" value="REJ DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01825">
        <property type="entry name" value="GPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08016">
        <property type="entry name" value="PKD_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01477">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20519">
        <property type="entry name" value="Polycystin_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02010">
        <property type="entry name" value="REJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01433">
        <property type="entry name" value="POLYCYSTIN2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00303">
        <property type="entry name" value="GPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00308">
        <property type="entry name" value="LH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50221">
        <property type="entry name" value="GAIN_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51111">
        <property type="entry name" value="REJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="594"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="803"/>
            <end position="821"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="844"/>
            <end position="865"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="978"/>
            <end position="1004"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="1016"/>
            <end position="1047"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="1106"/>
            <end position="1126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="1189"/>
            <end position="1208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="1377"/>
            <end position="1397"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="1417"/>
            <end position="1439"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="1467"/>
            <end position="1486"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="1506"/>
            <end position="1524"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="1570"/>
            <end position="1589"/>
        </location>
    </feature>
    <feature type="domain" description="REJ" evidence="14">
        <location>
            <begin position="1"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="GAIN-B" evidence="13">
        <location>
            <begin position="436"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="domain" description="PLAT" evidence="12">
        <location>
            <begin position="640"/>
            <end position="757"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="391"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="391"/>
            <end position="425"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3995529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1685" mass="191181" checksum="37326F232D2B1896" modified="2020-12-02" version="1">MAGYCDIKPHESITLLTAFQTNCYAWYDRDQPLSYEYLYSTDGAKYSMFYNGESPASGLSFFKAGLPELGFVISVKVIIKDGLGESSVVFLTVKNPPPSDKQIEEFFNSSQQIDGQVCHLLNDNNVQGALQFLQTVSGLLNERSNRSEQSGKRTEMRERILDNLKKLCCSDGVATKQTVETIFSVVSVPSELSLDAQLHASTIYLNITRSLHLTSEKSEVEKMAKKIATGISLLLSAVTLLSNGTTSGNTTQMNKINEASLLAIGKLGDTLLHQTEPGQPAIVLATSLFTIAVQKHFTDEFSGTRLTFPNQITEFAIPGKLNPIQGPFVSSKMLSMLNNPFLRQTSSHRLEPNTDVASLELLDSQGIELQMNNLVEPFDILLQGKDSSIVSTQDSAQDSSQSPTKHSSQSSTKHSTQSSTKHTSTLAEDSDPDLYEINTTRSNAAILVTIQQISADTKGQLRMRIYKANQSRATGNYLIVSTTSSFPVSLTWRGLLRRGTYYVSVEYESLAFRRAGKANGIEYSMSFREIGCYYWNVSRERWRASGCQVGLRSTTTTTHCECNHLTWFGGRVVVPPNSISFAKLSERIKDPSNYVTILSVLCSVLVLYCLLLVWARRRDIKDEGKNGITWCPSNHVADSHQYQVIIYTGIRRNAGTTANVGLMLSGELGKSRKCLLKSSKRDVLKRGHVDSFLITTTGSLGPLDYLHIWHDSTGSDPAWFLNRVVVLDSETGRVENFLCYRWLAVDEGDGQIQRLLPIADAEDLKRFRHLFVSRATSELTDAHLWFSVAFRPVSSPFTRVQRVSCCLTLLLTSMMANAMWYETGGSGNASQINLGLFSFSWDEVFIGVCSSFIVFPVNLLLVQIFRHCRSKNKPSRRPSFFPTQKTKVKPAFFNMRTTLLGSRDGSAETRDRSRDVSHDISPVMLTSPQRTSERLRKTSVLSYVVVSPQGSPDGARSVTSLLSHVNSRGKRFKDNNMLPYWCQYIGWIGVFITCLTSATVTFMYAIEFGENKTRKWLLSLTISIINDVFIAQPSKVLVVTVVLAYILKRPLKERYSSDDVIQQETLETAPTQESEFEAPDFNLCTADEFLRTAREQREKDKFMYGLMKNVISHLCFTVLVLIIAYGQRDIMGYHLTATQENTFVYKSFKEKSLKKQTYGFYQVTNVKDFWLWNKAVLLPGLSNNAWHNYSTEWSTFTANFGGFLFGAARMRQKRLKKDVCDVLPMFKDIIQNCSGNYEWSNEDKASYENRWAKPSGNNHLCNTRNSGTLPPDHWCYTSLNGLITATYVGRLETYSGGGYSQVIGQNYKASLNLTRELKEHKWIDKYTRAVFVEFTLYNPNVNLFSIVTFIFEISSSGDFNPGTNLLSIRLYNYVGNFQIFVLICQLLFLGFLCVYTYNSAKGIFREKWRFLSKAWNFYEFVLVLVSWLAVAIYFVAIVFRKRILQEFREDPTKFTSFRHSASWQMSLEYVIAGLVFLVSLKFLRLFQFNRRMFLLPLTLSNTARELISYTVIFSIVLMAFSLLYHLMLQPYNPNFVSIVSTIETLLRVLLGKSDVLVKHHQFPDLERVVIFVYMCLMKFILLNIFVAILNDGFSRARASNENQRNAFEFFDFMKNTANEMLGIRRLNGAKKQSVSSVKIRRVRFKDEKPMNNVGYMLRKLEKKVEMMLNVVQSDSFKDTFYDEGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E945</accession>
    <name>A0A7D9E945_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021714</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004811">
        <property type="protein sequence ID" value="CAB4004111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E945"/>
    <dbReference type="OrthoDB" id="8065611at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="457" mass="51641" checksum="6C5F7DFA3FBB8390" modified="2020-12-02" version="1">MQVHCVLLNSKFIFRHEGAAKNIRENWTVQRQDRYGFSAIAYDQEIEQTANRDSKTNGGMTGFTLNRGAVHRWFLSQSERSAIARQCLLMTSATNECRTRKNLDEPKRKSHEADVLSVMNTIENTINPSELDQSEMVHITSGIIANDKVKNDLQNVKAIGEERLSTFVQTKLLSKVPDIFAAIQKTKLHTFSSLTKPVSTTKAKGKEISLKSSRNLMGKLLLLARSREIDLKEVLSFSLGPYPLSLVTTDGIMVKTVKANLMHIIEDTVDDSVTDVIPSNGALIIDAMAMFQSLSQVPPTFEELPPLLLSILISMATRLNATRVDFVVDRYTKVSIKNSERKKRASTGSNMLKIYGKKQKTPTQWKKFLNNGENKESLACFVVDEWKESKSENFRGIVLYATRKDQCFKFLPSHNESEKPEFEQIHELHSDHEEADTRLLLHANHASTSGYSILMFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9D0</accession>
    <name>A0A7D9E9D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005076">
        <property type="protein sequence ID" value="CAB4005024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9D0"/>
    <dbReference type="OrthoDB" id="6497161at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="401" mass="46324" checksum="B9671BFEBCF74A8D" modified="2020-12-02" version="1">MLTRQSRNDVEAQGEQTIAQNDIESTEANFKSLLRKLAYFNRSTADALESEYGSDKINRQYTLLKTKLDEAYDLIQTIQGLKLDSDESDDAIDQWTQERKLQVQPYENAVEKLDERLKHDEIPKSCSLESLSHMEHSLLHIEEDLHRIFEWCCNNSLLVNPEKTKMLVVGTRQLMNQLESPVYINFMGENLAPVTEVKDLGMLLDSHLTYDKHIQALSSSCISKLRQIGRVKHNFDQSTLVTIIDTLVMSKINYCSTVWSNTSDGNIKKIQLIQNCAARLITGVHKYDHISPTLNALGWLSIKEHLLYRDALLTFKCMNDKAPQYLCDNFEPRNRTHNRDTRRNGDLDIPKYRTSIGQRSFKYRGTKIWNGLDTELKSISDLNNFKTKLKTILIEKRCPSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EB92</accession>
    <name>A0A7D9EB92_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042091</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005227">
        <property type="protein sequence ID" value="CAB4005530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EB92"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="82" mass="8853" checksum="F83890C75A99323F" modified="2020-12-02" version="1" fragment="single">MPPKKLQARKRALRTADEGPSAQRSRRQSTRNSTLASRSNVVVAAEDESSVIPLSTVPPTMVQQLDPELVLVQSIVSTVAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBF0</accession>
    <name>A0A7D9EBF0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016029</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004592">
        <property type="protein sequence ID" value="CAB4003306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBF0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="210" mass="25958" checksum="3203630BCA022F88" modified="2020-12-02" version="1">MQKQQQLQQQRQQQPQQQLQTKLQQQEAVQQQKQQQPQAMQQQQQQLQQKRQQQRPQQQLQNSPQQQAMQQEKQQQQKQAMQQQQQQQQQQQQQLQQQRQQQQPQQQRVQWQQKQQQIQQYQMQQQQQQYQQQQQKFFNYNPPTFLRPRLQKYNNYSPNFIPKYGRNHQRHKLKHHRYKNNRHSKQTTCPGNCPAVCAPSCIRGCCRLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EDB2</accession>
    <name>A0A7D9EDB2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">BOS complex subunit TMEM147</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Transmembrane protein 147</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A089579</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the TMEM147 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005265">
        <property type="protein sequence ID" value="CAB4005659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EDB2"/>
    <dbReference type="OrthoDB" id="9993532at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019164">
        <property type="entry name" value="TMEM147"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12869:SF0">
        <property type="entry name" value="BOS COMPLEX SUBUNIT TMEM147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12869">
        <property type="entry name" value="SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09767">
        <property type="entry name" value="DUF2053"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00034739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00034846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00034899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4005659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21552" checksum="6C19FD311F0698BC" modified="2020-12-02" version="1" fragment="single">DSVRFRKRLSHPHFQYIMFSKSCMISEYSAFWRCVQAACTYLVTQLCKMLVLATFFPTSESTADSLDVFAEFLKSTVDVADLFGLYLTMSKIPGKGELKVLVAGLGYARSSVAMTTRHIVEINFASIEMAEEFGKMKCGINTNLIESCHFRALPWFFRSNVLHQKSLLLVAMLFILLQYTRSLDYFSIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EF95</accession>
    <name>A0A7D9EF95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054929</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006340">
        <property type="protein sequence ID" value="CAB4009111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EF95"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180:SF2">
        <property type="entry name" value="BRO FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26710" checksum="145E039B6A213FFC" modified="2020-12-02" version="1">MEKIFRNQKLNASVRTVRSGEEVLFYAKDVAESLGYSNKKKAIQTHVWKSNKTTLGELGVGHMRGTTLDGQPNSVFLRESGLYQLIFKSRLPIAEAFQDWVVTDVLPSIRKTGSYELPESEPLYCNQMKLINETDLHYAVVEYLKKYHPEALILQGLGEYQDTSHKRCDAWRKGYMGGQPDLMIITPSNGFHGFAIELKRGPIIGGTHLRKPRCFSNFNRKPRTHFSFKRNRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EHW4</accession>
    <name>A0A7D9EHW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-type tyrosine- phosphatase delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057806</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005844">
        <property type="protein sequence ID" value="CAB4007597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EHW4"/>
    <dbReference type="OrthoDB" id="428111at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050713">
        <property type="entry name" value="RTP_Phos/Ushers"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46957:SF3">
        <property type="entry name" value="CYTOKINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="39373" checksum="F643438EA922ADE2" modified="2020-12-02" version="1">MGVNRQGLVNDKPTNLTVANITSRSAEISWLDPENHGRYGLSRFKIELKKYFVIRSFFTQKVNKYKIDKLTPHTTYEISVAAGNYRGYSEGTITTFLTSEEAPSGPPLDIKTTSRSTSLSLIWDPPQETKQNGVIISYTACVSHSENGPCFQKFVTSEREWLVGNLNASTKYYVRVLASTKVGHGQYSTSKGYFTNGRAVEKPIAATLSTLTFSLENPSTKFLYFYVVALKLKDDKEPASSDSYENNELVTYAEAKHSTDPKPYIAAVVTSSGVDGNMFILGDGSNTNDTTSRKRGSTTSDYFNGPLEPGTGYRIFQRIVINEKGDYYSTDWSPASKTSEYPGKYLRRIIYDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPX2</accession>
    <name>A0A7D9EPX2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A033776</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Cilium axoneme</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008770">
        <property type="protein sequence ID" value="CAB4015576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPX2"/>
    <dbReference type="OrthoDB" id="5981569at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030286">
        <property type="term" value="C:dynein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045505">
        <property type="term" value="F:dynein intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051959">
        <property type="term" value="F:dynein light intermediate chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.2620:FF:000002">
        <property type="entry name" value="Dynein heavy chain 2, axonemal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.100:FF:000003">
        <property type="entry name" value="Dynein, axonemal, heavy chain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.2620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.100">
        <property type="entry name" value="Dynein heavy chain, N-terminal domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.180.20">
        <property type="entry name" value="Dynein heavy chain, N-terminal domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035699">
        <property type="entry name" value="AAA_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026983">
        <property type="entry name" value="DHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042222">
        <property type="entry name" value="Dynein_2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043157">
        <property type="entry name" value="Dynein_AAA1S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013602">
        <property type="entry name" value="Dynein_heavy_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042228">
        <property type="entry name" value="Dynein_linker_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46961:SF15">
        <property type="entry name" value="AAA+ ATPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46961">
        <property type="entry name" value="DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12774">
        <property type="entry name" value="AAA_6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08393">
        <property type="entry name" value="DHC_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="6" id="KW-0243">Dynein</keyword>
    <keyword evidence="3" id="KW-0493">Microtubule</keyword>
    <keyword evidence="9" id="KW-0505">Motor protein</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="954"/>
            <end position="979"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="954"/>
            <end position="967"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4015576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1276" mass="144939" checksum="F45B637738AD7549" modified="2020-12-02" version="1">MIEKRHIFEQELDKDVKRFVVEVIQFRNSFDSQGPGVPGVLPADAVERLHNFQNAYSEYEAKRKILDAVQLLFGVTPTHYPELDRTGEELVLLGLLYGLFQQYISFDQSFREKLWADVDLISANREVESDWQQCLRLPERIQEWQAYKDMKSYIKEYLDVFPILHKLASKEIRNRHWLQVMSVTGSSFQLEANVFKLKYLLDIELINHQDEIKDICSSASRELELEVKMRSTEEEWTEQVLQFEKFKDGAMYCLSNQHTEGLLELLEDAQSSLAMMLTSKYIGPLQHEAAAWAMKLKEISEVLEQWLAVQDFWRYLEAVFSNPITAKELPHEFARFARVDKSYMKMTKRAHDTKNVLQCCVGGDVPKIQVLKHLYEELEICFKSLQAYLNARRKVFPRFYFVSDLVLLAILSQPYTLDSVKPHLKSLFVGLTDITLTPRPDGVKSAWNMAVLNVKKTIKEDEEQPTSNLIIPPYRKVSQNLQSEHDLSRAISRNLSTCVSSSSYNEWRIVLSDAVAVTSEKGETLELKKEVFLHGGVELWLSELSRVLQETVHDAVVNCVEDAKTFNYIDEIAQKYPPQIACLGLLYMWTRECEAGIADIRIDRKALPNAIRRFWSILSRLPNILIKGSWRNIDQNLTVASHAKLEALLSYGMYLRDIVDDLGKRKLRDVTDFEWKRNMRFYGNICEEGRDGKPHALLHLLENVLEYGNEFYGSRMPIILTPLTERCFLTLIKATTEFQCGAIVGESGTGKTETAKGLAHMLGQYFVSLSCTPKMDFGQVAKILTGLAQEGCWGILDEFHHAPPAVVSVIFHYVQTVIDALKVGQTSCYVNEGKEIVIKPTFNILVTATSDSQDFTMVTELKAYFRTVTMVMPDMPLILRAHCAGQGLKSPKVLADRFTMVAKICQAQLSSTTAKIFSLSSLISVVKTLGAIHRSQNTNNQNKISMMTSDFQMRPTSNTSMLRSSKFTGDKEKKAASPSGLTTAAKLDHSCAMQVLQQCIGPRLSQEDLGIFNSVLRDVFNGLPRLPYATDQHIMNDRSFESLLMKYASENGLVARPQWMDKVLQLYHLSENNHGIIVAGGPGSGKTSCITSLVETLARWSLVKHGNTGAQVHAHKLHRINPLAVSDLSLMFGQLGPNGDWLDGIFTSYWRKANKEHNVHRTTTWLCLDAPLHQGWAENLSSVLDNGKYLTLENCERLHLADDVRIVFETDDLENASPAILSRTAMVFMDDDVLGWQPLAEAWLNERSSAMERKCLQKAFNNTLDPMSHFVLHDSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EU33</accession>
    <name>A0A7D9EU33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A087493</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009992">
        <property type="protein sequence ID" value="CAB4018413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EU33"/>
    <dbReference type="OrthoDB" id="5814287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="24255" checksum="6CA3370AB0F5DA1C" modified="2020-12-02" version="1">MKSQQEDNSRWQMARKSVKSANQNPYLHGKYAQFLIGFDTIGEKKRLLKVVKIKKFRKLKPWIGSIINHMYWVAISSQSPVEREEKWLSLLNHIVDVHVHNENKLFMKCTHETIERKWLQTEYIQTVQEECLKLRNDFSTLKKAISHSKELLPEEPVTLVEKYLDGKQPKPALPGVDEDKNAPQDDANVKMNFASVSLLAVVKEACKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EU71</accession>
    <name>A0A7D9EU71_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007222</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010027">
        <property type="protein sequence ID" value="CAB4018487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EU71"/>
    <dbReference type="OrthoDB" id="5981593at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058913">
        <property type="entry name" value="Integrase_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24764">
        <property type="entry name" value="rva_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="21004" checksum="4FFA60026CBBCDEB" modified="2020-12-02" version="1">MRMFGLSKLTFSDISDDDLDRVVNNICHDFPQCGENMLKQILSGKGIKVQRVRLRDSLHRVDSDEVERRKCGRLHRRVYNVKCPNVLWHVDTNHKLVRWNFVIFGCVDGFSRLYVALKCLNNNKANTLLQCFVNGVQAYGLPSRVRSDNGLENVHIAQFMIEKQGQERGSIITGKSTHSQSEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EWW2</accession>
    <name>A0A7D9EWW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047705</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009546">
        <property type="protein sequence ID" value="CAB4017432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EWW2"/>
    <dbReference type="OrthoDB" id="5980564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="14148" checksum="EF6CB8F9A05A32D5" modified="2020-12-02" version="1">MDFSDPQGGKGSCDRKAATIKSHMAVHLNSGHDIENPVQMKEEIDSFGGVPGVEFTICGSRYSKGCRNIKWSGVGLLNNIQFNEEGLKVWKEYNVGHGKSILWKNIDAPGEEIVTSVVIKKSPSKPNFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EYJ2</accession>
    <name>A0A7D9EYJ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023324</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010179">
        <property type="protein sequence ID" value="CAB4018815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EYJ2"/>
    <dbReference type="OrthoDB" id="411378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="39489" checksum="136732591D0286D5" modified="2020-12-02" version="1">MTQKWFDVTDNSNIGRKGVHTTFLGFKKAFDLVDHRILLIKLAEMNVSKAFWSWVKCFLTERTQHVNLHGVISSSAPCPARVPQGSVISPTLFNIHINDLENTLTNNLTNTHKYADDCTLDEVVANGALSNMQESTNQVMNWANDNKMMVNPQKTKDMWISFSQSSSEPPPIQTDGIEIERVNSFKLLGVWVQNDLKWNTHVCKITKRANKLLFLLRECRKSFLPPEIGLLTYTSKIRPILEYASLVWGGIPKYLEAEIERVQQRSLRILGLEKDTLPTLKERRDKATCNELKRIVEVPKNPCNRFLSRNKNHTYELRRTRDSTSRQLSKTHRHSTSFIPRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9F006</accession>
    <name>A0A7D9F006_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010824">
        <property type="protein sequence ID" value="CAB4020180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9F006"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="67" mass="7952" checksum="D1E0F1EE620EA905" modified="2020-12-02" version="1" fragment="single">MFDPGESVGDEGLIRAVQRFWDTESLGIFEPNPSLEKEFLRDSNFDKNQGRYQESWPIIWFIITERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HE97</accession>
    <name>A0A7D9HE97_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037033</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000294">
        <property type="protein sequence ID" value="CAB3980487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HE97"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="349"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="361"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="391"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="416"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="606" mass="68010" checksum="A3E048844D75B5A2" modified="2020-12-02" version="1">MATDNASRSQPDKNSTSTTDYWMNSVNITLSIPPDLTLEKGKLKWLNNFEDLKLFVETTLQIEGTWSSPGGYLKAFSEDPESVLIRYYTDTKSLLFQSDRGKKIKNFLIGKIASISQPVGDKHSSRSSEQNSTSIHDDSIVLVNSPSQTLSERLDEDEYALNLSEFESVNTISVDNSSQTYEIESTEYHLTRVSRECNCACSQSSKDIEILKSTITKLQSSIDSFEIILKVLSMYNRAADMNDKYLKEINESKQHIVYLEQKLLETSQERDSLQLATRLIAQDKYCHHHTSQNEVAETAARKNDNVWQKVHNTNNNGVYHNKQTKQLTRTDIGTANRFELLINEDGNNSCCDPEQEHNHKSSQARNTQWTHDPSDHSQLDSNDDQSAQHVTSPQQTSTSSSLSNQTPNRGLNGKQGGKRHNGDRKNQKSGHSSRKVTIVGDSMLKNLKGYRMSKENKVKISTFPGSTTRDMYDYIKPVLRKKPNQVIIHVGTNSLRESESPTSCAEEIVELAKSSYLTGRSQKCNVRGCLSSSASVTRGVPQGSNLGPLLFLVYINDLPNCLSAAVPRMFADDTNISYAANTIAELENVINSELKKLKSWLEQIKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HP63</accession>
    <name>A0A7D9HP63_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054731</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001176">
        <property type="protein sequence ID" value="CAB3987444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HP63"/>
    <dbReference type="OrthoDB" id="10440970at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101898">
        <property type="entry name" value="NHL repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="455" mass="51806" checksum="DF871B6589601176" modified="2020-12-02" version="1">MTMSTSVQSEILNEALPLSQAMEKLNIVSDGDFERAKERFKDARRRATDAFSNQALSIEDRLMAAKLHIVATILECLESPEHAITSCLSFLKELHGLEEIAEIFSVYLNRGFMSRLNTAQRVECVKSIMLVNYTLFQFVFKFTSKYTSAIAWPTIELAERSFNPILSWQEISTRKSMGDELTQLPNKLILDESTITVYSAVNSHGDVIVGEDPDNIKIIWKRAESKVVKLPEPSEGKVIRQYIVGLAVDKNNNVYVVRWLKTSTENGKVESIVLDVLDENYNVKQDSRRLEHLEATKCYYVKIAITKNNNIVMVRYRDPQVYICDNTGKLKHKFERGSLDLRSLGICGQGEIMIPSDDDRAVEIYSEEGNLKSTIKLPEGHKVRGLEFHYVICKIIFLTYVEKKDSYFLLCYTEAGELETTTFFSKRVADELPPKIKSHPSGPVAILKEKSITFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HPB5</accession>
    <name>A0A7D9HPB5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="19">Adenylate cyclase type 9</fullName>
            <ecNumber evidence="5">4.6.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="22">ATP pyrophosphate-lyase 9</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="20">Adenylate cyclase type IX</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="21">Adenylyl cyclase 9</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="27" type="ORF">PACLA_8A080542</name>
    </gene>
    <organism evidence="27 28">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="27" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="27">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP = 3',5'-cyclic AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:15389"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58165"/>
            <dbReference type="EC" id="4.6.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="23">Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="27">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.1" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020001498">
        <property type="protein sequence ID" value="CAB3989502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HPB5"/>
    <dbReference type="OrthoDB" id="10035433at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007189">
        <property type="term" value="P:adenylate cyclase-activating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006171">
        <property type="term" value="P:cAMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.1230:FF:000008">
        <property type="entry name" value="Adenylate cyclase type 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.1230:FF:000014">
        <property type="entry name" value="adenylate cyclase type 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018297">
        <property type="entry name" value="A/G_cyclase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45627">
        <property type="entry name" value="ADENYLATE CYCLASE TYPE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45627:SF8">
        <property type="entry name" value="ADENYLATE CYCLASE TYPE 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00452">
        <property type="entry name" value="GUANYLATE_CYCLASE_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0115">cAMP biosynthesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="16" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="18 23" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="17" id="KW-0464">Manganese</keyword>
    <keyword evidence="15 25" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="28" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0677">Repeat</keyword>
    <keyword evidence="7 25" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13 25" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="144"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="226"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="663"/>
            <end position="685"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="691"/>
            <end position="710"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="731"/>
            <end position="755"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="793"/>
            <end position="810"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="25">
        <location>
            <begin position="822"/>
            <end position="839"/>
        </location>
    </feature>
    <feature type="domain" description="Guanylate cyclase" evidence="26">
        <location>
            <begin position="317"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="domain" description="Guanylate cyclase" evidence="26">
        <location>
            <begin position="899"/>
            <end position="1038"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="24">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="24">
        <location>
            <begin position="494"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="24">
        <location>
            <begin position="526"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="24">
        <location>
            <begin position="14"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="24">
        <location>
            <begin position="494"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="24">
        <location>
            <begin position="526"/>
            <end position="538"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00070496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00081225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00081232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="ARBA" id="ARBA00081427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="RuleBase" id="RU000405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="25">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="26">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="27">
        <source>
            <dbReference type="EMBL" id="CAB3989502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="28">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1095" mass="123162" checksum="72872B16B4B5A3AA" modified="2020-12-02" version="1">MDITAGEYGNHSRASSEADSRNPETRLKSFNALVKKDRSFSQVDTRNNKGCVPLYFERASSAWWYPKFDSSILEKEYQEFSFVNNRRAVVKILIYLLIAALIWMIYFGATQEDDNRQPVLIAIACFGAVFFVSLAFVQSSLYRHIPCIASLFLAMLIITVDLLFFVRSVEEFSGAAHFAMCASFILIIYTMLHSIPLFVSMIILALFSIVHEILYGYELGLNERSGKIVCTAVLHLVVHIIAIQISFMAQVRDRSTFWKFGQRLIAKREAEIEKSAKDSMIRSVMPETIAEEILIANFMKKELTFRPFKMHRMDDVSILFADIVGFTQMSSNKTAEQLVGLLSDLFGRFDQLTYEHQCEKISTLGDAYYCVAGCPEPISEHAFCCVDMGLAMVKTIKEFDEENNEQVGMRVGIHTGTVLCGIIGNKRFKFDVWSNDVTLANKMETAGVPGKVHITQATKDFLDDIYIYEDGHGSTRHVALEGITTYLILGKKRKHEKKGSSRHHKSEGKPDESFKKVSIRIDKNAVMSSNGPSSSLSVQVPPENKSPRGSLKRQSEEILDSDILNSSYTSEDEYGLYNGRRPSQALGGTINEALARFRLRTSNDRELVALIKDNENSFANPPLVTGSLWFRDRSLEKSYHEEGQDTTLLSPTVTTFASPKVNFLFDVFISNLVYVYVVILCFVMLVDDISIANYITLALTFLLEIFFLIFNMSRAYPQHMKFFAAFSKLPGWLSSHISGTVLMCLPVLTVMLNFTVCGKDIGNDFVTFSANVMIVTFIHFCNFTQLTSILKSALVALLAILFIIITTTVSDCDNVEAKLQQDMIPTLILLTILIFILNYRNDIGVRMNFLVDAEAAKDKKEAKMNKAQADWLLESIIPKHVIAELQEEKLYSRNYENVGVIFASIVNFGDFYEENFEGGKECIRVLNELVGDFDDLLQRLEFSEVEKIKTVNGSTFMAASGLNNSQGNGKGKNHLKQLIEFALAMMQEISNFNDHMLGFKFILRVGFNAGPVTAGVIGTNKLFYDIWGDTVNIASRMDSTGVDGRVQVSEASKNLLEEFFAFEERGEIPVKGKGTIKTFLLVGPVDDKIDVEIED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZN9</accession>
    <name>A0A7D9HZN9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046461</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002325">
        <property type="protein sequence ID" value="CAB3993769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZN9"/>
    <dbReference type="OrthoDB" id="9934617at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="93"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="231"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="145"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="186"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="234"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="244"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="44934" checksum="80B602397B797AF1" modified="2020-12-02" version="1" fragment="single">MADRTPSLPSTSKESRKEYYKIRDASKVYLFGVFQRWREFRDANNIKTDKDAAEVLLDTYYNSKSKNSCVSVESQTDPEEVGPVSSTACLQEIQPITPRSGPQTRQALRDSLPSPVLTSTPRPCASGFTRTSSFPSPVSDINPVSPLARSSRRSLLCESSPLSSRSTRIREVPVDISPLEETLTASDEDSGSDDDGSLETTLTATSLLPINENYELPLAETSIEEEVFNTNLGGHDDIGEHEQQLTGNGESDSTGYTSSVQGVTPDKAVQMEKCIVFTDTLVSLLKELHGSICKRQGCGRSLEYQRRYLGTCLVVSWQCSAGHRGGRWAAQPTCEKIRAGNLMLASALLLSGNSFTKVGLMFRFCNIQYFSKTLFCQYQSLDIAPAVNEFWEQHKQELWDQKSGQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I0I4</accession>
    <name>A0A7D9I0I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002654">
        <property type="protein sequence ID" value="CAB3995388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I0I4"/>
    <dbReference type="OrthoDB" id="5987726at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23032" checksum="1E84F6F1B997027C" modified="2020-12-02" version="1" fragment="single">PSPAILGFTISHHLEGYSQSDSKLVSLLKESFYVDDLVTGDESVDESFHIYKRSKQIMAEGGFNLRKWNSNSQALMNQIETHELAKGGDERSKIDKATQDQRGVSSHTSEEDEPYAKLTTGHNAIDPSDGGVKVLGSNWDTKADELFFNFDKWKEDASSIPATKRSLLGLTAKIFDPLGFLAPLTISMKIVFQILCTNKVDWDETLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I264</accession>
    <name>A0A7D9I264_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009321</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003094">
        <property type="protein sequence ID" value="CAB3997423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I264"/>
    <dbReference type="OrthoDB" id="5976086at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="231" mass="26301" checksum="218417371CB6D524" modified="2020-12-02" version="1">MGQSITKLRKEVTSPQEGQKREFEERLQILEKMIEQRLEIEKIAILNGEKNDQEIDTGTIVSLHKMVFIKTEKKESDDLKKVIHQLFSGDFIGGLESIVGLGAESVLGNDSVGEYDSTDMFIVWSDNALLRCDTYYYRWNFVSKSVINEIEGVTGCLLMKRVIDITKTDPQVLTWAITRMADRFNNVTEEKSADSKDGAKHKDTINEALKVLENVVDIQRRIKAVEAGEKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6V0</accession>
    <name>A0A7D9I6V0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Interferon-inducible GTPase 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A022610</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class dynamin-like GTPase superfamily. IRG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003683">
        <property type="protein sequence ID" value="CAB3999843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6V0"/>
    <dbReference type="OrthoDB" id="422720at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000541">
        <property type="entry name" value="Immunity related GTPase M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030385">
        <property type="entry name" value="G_IRG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007743">
        <property type="entry name" value="Immunity-related_GTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051515">
        <property type="entry name" value="IRG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32341">
        <property type="entry name" value="INTERFERON-INDUCIBLE GTPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32341:SF10">
        <property type="entry name" value="INTERFERON-INDUCIBLE GTPASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05049">
        <property type="entry name" value="IIGP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51716">
        <property type="entry name" value="G_IRG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3999843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="26425" checksum="FE5B82AD5F141E40" modified="2020-12-02" version="1" fragment="single">MGQSQTKQVKQPTQEVKQTTQEVKQTTQKDGKLRFAVAGESGAGKSAFINAIRGLKDDDDGAARVDVLETTMEPTEYQHPENPMISFVDLPGYGTPNNPDLPTYWKNAGLDDYDIFLIITPTRFRQNDFDLAKKIHSTGKSFFVIRTKIDFIKWEIRKRSFNEEKTWMKIREDCMENVKGLISSENEIFLISNYDPHKWDFPRLHGAIINALPGHQRECLSRRKTWSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I923</accession>
    <name>A0A7D9I923_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025636</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004254">
        <property type="protein sequence ID" value="CAB4002090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I923"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30601" checksum="33DDB7E2DC9E3C54" modified="2020-12-02" version="1">MSTYGRHFEELAKAIGTLEVFPNIIKEFTNFLKQRYLKKHKPSELVWIDRLCGRYEDNCKHYAKFIKRVVSSQFLAKCLHAKEEEIGDLLKEFKANINAANKRLDNFLGETDRKEVVEKLDGELSKMEAAQQKKDKKDKYKLKFTDWLKGKVLEQVGEVFAKVVGPLWEMVYTNASMAIQSDYDHDVLKAAVDNLHGALPQMEESLNSNRSALKGISDVLEVFLKLHEQNPKDAGLAREMMTLSPMQNSIDNACDRITTLVESLNNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJR4</accession>
    <name>A0A7D9IJR4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CLIP-associating 1-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A048056</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005889">
        <property type="protein sequence ID" value="CAB4007722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJR4"/>
    <dbReference type="OrthoDB" id="6020512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045180">
        <property type="term" value="C:basal cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005881">
        <property type="term" value="C:cytoplasmic microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000776">
        <property type="term" value="C:kinetochore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005815">
        <property type="term" value="C:microtubule organizing center"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072686">
        <property type="term" value="C:mitotic spindle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005876">
        <property type="term" value="C:spindle microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0040001">
        <property type="term" value="P:establishment of mitotic spindle localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090307">
        <property type="term" value="P:mitotic spindle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024395">
        <property type="entry name" value="CLASP_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034085">
        <property type="entry name" value="TOG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21567">
        <property type="entry name" value="CLASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21567:SF9">
        <property type="entry name" value="CLIP-ASSOCIATING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12348">
        <property type="entry name" value="CLASP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01349">
        <property type="entry name" value="TOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="323"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="339"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="354"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="378"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="398" mass="43859" checksum="4E4F9742187FA8C7" modified="2020-12-02" version="1">MENETFSTLSKEYYEILHDIDHLCQTFRRQDGIKVMVRGPVKVNGEVSEPVKTRTANSSLKRSNSRNEPRSEGSSTSGLAVGAVDENDFVRAYTDTPTVQIGSAKELADELTKISNALSSPSDDWEEHVAALKRVRSLVDASSLEYDFMTQLKPLEGAFNVAVKSLRSAVAREACVTLSYLSTKLGNKFGPMADGVFPTVIDLNANTATKIMASSGDTCARIVIKNTHFPRLIPHITTRMTSRSTPVRIRCADYVSLLLEYWELHYLKSHVNEIENVVRNGLSDASSDVRVLIRRAFWQFSKLFKEKADKLFNDLDSSKQKLLEGDKKSSSASGPSSALPTKTLKSSRASTRVRPPSASSTLSSASSSSLSSRPTRTDVPSSNKPTRTNSREAIWIGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPI9</accession>
    <name>A0A7D9IPI9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">ATP-dependent DNA helicase DDX11 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A005575</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006746">
        <property type="protein sequence ID" value="CAB4010317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPI9"/>
    <dbReference type="OrthoDB" id="267079at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034085">
        <property type="term" value="P:establishment of sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001050">
        <property type="entry name" value="ATP-dependent DNA helicase DDX11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045028">
        <property type="entry name" value="DinG/Rad3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014013">
        <property type="entry name" value="Helic_SF1/SF2_ATP-bd_DinG/Rad3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006554">
        <property type="entry name" value="Helicase-like_DEXD_c2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010614">
        <property type="entry name" value="RAD3-like_helicase_DEAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472:SF41">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE DDX11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472">
        <property type="entry name" value="DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06733">
        <property type="entry name" value="DEAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00488">
        <property type="entry name" value="DEXDc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51193">
        <property type="entry name" value="HELICASE_ATP_BIND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 15" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-0539">Nucleus</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="14">
        <location>
            <begin position="83"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB4010317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="448" mass="51741" checksum="7E51CC930A6F169C" modified="2020-12-02" version="1" fragment="single">GKSLSLICGALTWLRDFNENAETKLKTAVDEIDCASNTTTPESSVPSWVSEVASNRAKKMLLEQAQAEQEKEERYADRLKRLKEQRHRKQQKRKHESEENENDKIEEQLTAELNEANKKDEDDDIILHEYHSDNELDKNDASSDEEELDEVHVTKIYYCSRTHSQLDQFVKEVKKSSFGASTRVVSLGSRLNLCVNEDVKTLRSISRVNDRCLELQKLKKGKKKQESQSNKKSKSKNGCPYYDHQRLQNYKDLILMEVKDVEELISIGEEVEACPYYGSRYAIPKAELVVLPYNMLLHQATREACGIKLKGNIVIIDEAHNLIETISNIHSVEISGIQISRANSQLLQYRDRYKSRLKAKNLMYVKQILQVLSCLLACFDKSPQNTDGQQEESKQKADVKLLKINDFLFTTKMDNINLFKIKRYCERSMISKKLNGFVDRYNTTLLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IRX1</accession>
    <name>A0A7D9IRX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Interferon regulatory factor 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A005302</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007877">
        <property type="protein sequence ID" value="CAB4013413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IRX1"/>
    <dbReference type="OrthoDB" id="6538197at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002376">
        <property type="term" value="P:immune system process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00103">
        <property type="entry name" value="IRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000065">
        <property type="entry name" value="Interferon regulatory factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019817">
        <property type="entry name" value="Interferon_reg_fac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001346">
        <property type="entry name" value="Interferon_reg_fact_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11949">
        <property type="entry name" value="INTERFERON REGULATORY FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11949:SF17">
        <property type="entry name" value="IRF TRYPTOPHAN PENTAD REPEAT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00605">
        <property type="entry name" value="IRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00267">
        <property type="entry name" value="INTFRNREGFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00348">
        <property type="entry name" value="IRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00601">
        <property type="entry name" value="IRF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51507">
        <property type="entry name" value="IRF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0010">Activator</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0832">Ubl conjugation</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4013413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="14047" checksum="0CBB6F4B0A11459C" modified="2020-12-02" version="1" fragment="single">MSVQPQTGERLRMRPWLECQINNGRIPGLVWDDKSRKIFQVPWKHAGKPGFVLERDAMLFKEWARHTGKYKDGEQADPSTWKTRFRCALHKLPDVEELRDRSHLEGDEPYRVFQFIPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUV7</accession>
    <name>A0A7D9IUV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008213">
        <property type="protein sequence ID" value="CAB4014239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUV7"/>
    <dbReference type="OrthoDB" id="6152038at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19579" checksum="6D31FFDFCC109103" modified="2020-12-02" version="1">MDNATQIQELRTDGYIQKVQEIQACPSEKQKKAKRVEFGITEKGGAFDGLKCFSGNNKTPIEILHTILLGPGVYVKGKLQSRALNQCFPAAIIEKTGHIGEEPCILFNGVVSENLTLVNSETPVVYVDNSQQHHIGIFKKGFQMEGHEDSLVGLRRWNSVKMNPKRSLWEVSSAPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IUW8</accession>
    <name>A0A7D9IUW8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">3'-5' exonuclease</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Werner Syndrome-like exonuclease</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A036555</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Has exonuclease activity on both single-stranded and duplex templates bearing overhangs, but not blunt ended duplex DNA, and cleaves in a 3'-5' direction. Essential for the formation of DNA replication focal centers. Has an important role in maintaining genome stability.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the WRNexo family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007992">
        <property type="protein sequence ID" value="CAB4013713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IUW8"/>
    <dbReference type="OrthoDB" id="10261556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002562">
        <property type="entry name" value="3'-5'_exonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051132">
        <property type="entry name" value="3-5_Exonuclease_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13620:SF109">
        <property type="entry name" value="3'-5' EXONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13620">
        <property type="entry name" value="3-5 EXONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01612">
        <property type="entry name" value="DNA_pol_A_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="13" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3'-5' exonuclease" evidence="12">
        <location>
            <begin position="48"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00037949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00040531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00042761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00045901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4013713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13124" checksum="BF53EFC62E1687A4" modified="2020-12-02" version="1" fragment="single">MAKKAPRKLPACFQQGMGESGLCDMTFDGKVYYCSQKDDCNFICNQLRLGNTPVVGFDIEWKVTFTSKVRKTALIQLCPSKEICYLFHIFMMNGFPSELKFILENEAITKVGVGIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IVF3</accession>
    <name>A0A7D9IVF3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008234">
        <property type="protein sequence ID" value="CAB4014286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IVF3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34400:SF4">
        <property type="entry name" value="MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13048" checksum="35997AC118298461" modified="2020-12-02" version="1" fragment="single">ECVGENADTFAYIGRSLPFDEDGVWPIVDNPMMSMYKNGTRTQYVAKSFSKTYWKMLEKLQNVFDGNTFLFGDTVAIMKELLIHGNRLVQTPIEENGDPDIGPNAAPIYPTKLPDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J1W4</accession>
    <name>A0A7D9J1W4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040216</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010726">
        <property type="protein sequence ID" value="CAB4019993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J1W4"/>
    <dbReference type="OrthoDB" id="6125656at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="34361" checksum="03256EFE112D1101" modified="2020-12-02" version="1">MGARYGGLNPIISVQLWKRIGIPKMLYGSELWQLNCNDIVELEKVQNITVRIMQGLLPGISGSAARGLLGLPPIEAEVDKRKLYFLGRLILMSHGVPCRKIFLMRLIRWKWNHTNTLKGFIPNIVRILLKYDLMDFLTGYMLSDQFPSKSAWKKIVKKHIYEYYNNIWQEKISTHGQLKLYAEVHPVNEISPWWLISRMKPDFMKQINDVLRLLCGSFKIKGKRMNKPETYRDYCNVCNSNFLNPVKHALLYCNGTSQSREELWEWINDTMPIEMAVHLASLTDMEFLLVILGVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JEG9</accession>
    <name>A0A7D9JEG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A050438</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015192">
        <property type="protein sequence ID" value="CAB4028024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JEG9"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="718"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4028024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="718" mass="82028" checksum="8CFDB87498E0B432" modified="2020-12-02" version="1" fragment="single">MIGITVVAAVVFVIIVTVACFIFILQRRRRKAGSPDCIRMDFLSQHSHETQQLEGNNTSGEVASSAQETGTNNAQYQNLTADGKPVPIFTRGVVPYQRDYMNKRPMRILSYDRVQLIRPLAIDWLRNAWGNVDEFGQHVYDVMQRVRHVFVPYDKCLLSQRDLAGNKVETSNKTYGTMERPPAVILPTGSENASTSENFKNYNSHQFKEELSYYTNLDPTSNDPNVLWNEFKNNFLTIAEKHAPVRQRRVKSEHKPWLTKEIKRLMHHRDYLKRQSVRLTSSNYNEAYKRCKNKLNKLIKKTKEEYFKTKLFNANNSKESWQAINELLNKKPKTTHVTQLNVDDQVITGDTNIADCFNRYFSSIGCKLSKNVQNINVDPMTFVTPTESSFHFSCISVQETFDALNQLNSRKSPGLDGISVKLLKDTSDVIAQPLANIFNLSLQTAIFPDEWKIAKVSPVFKEGNKTDCGNYRPISVISVVAKLFEGLVYNQLRTFIADNSILVEQQSGFRSQHSTETALLGSTNEWLYNMDSGLINGVLFLDLKKAFDTVDHEILLKKLHLYGIKGTTYAWFESYIQNRKSICLMNGKKSHAREIRCGVPQGSNLGPILFLLYINDLPKCLETTKANLFADDTNLSCAGLDANEIETKLKRDLENVHSWLRCNKLTLNDSKTEFMIIGSRHHLTKFEDNPEISLAIRDNNIKRVTNKKSLGFIIDDQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMP6</accession>
    <name>A0A7D9JMP6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A017143</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018691">
        <property type="protein sequence ID" value="CAB4032782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMP6"/>
    <dbReference type="OrthoDB" id="6090131at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="258"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="55828" checksum="9E97C118B08D3E53" modified="2020-12-02" version="1">MADNAHQRGKKRPYKDTNASFAFRHVVVSLCNKTAEVRQNELKVSIDERSGSVQDSMVALSSVLDELIANPNKCMPFNEAFYEYAGKLPNIACMPNKKEARRQFKDRILSKNGLPILFLNDDGNTYVMLLDLPLNNISLCRSIDFVLDCGSMGEHEQFDWSLVGCHIPTLLKLLSTSKDRAILVFILSSIVSPIRLALLLGMQHQHTQKVKKKVEEFLNEVERKQEEAEKESEKHIEDIISRLQTEIEQDAKDLSSKRMRLDEEEIESRNTDAEMKKQRKEKLQKDSKQKAKKRVAKRLFKKWKSQLMSQQGKGKGRFSIDRGAEKAIYEVLQEQLQSHRRRWGEEGTGYLEHERRIHSKEMKKIANKYLKKAGKKPVLSKETVRSWGKCRNKRSRQSKQHRGLNLWAHLRAEKKQQDKHINIHYNRAHVKNYTRFSFSRSSVVHGKNLVVRRAIDDKAYIRCGTSEGFCRPLHTPEYWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPY7</accession>
    <name>A0A7D9JPY7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FP protein C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A025950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019906">
        <property type="protein sequence ID" value="CAB4034190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPY7"/>
    <dbReference type="OrthoDB" id="7484295at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057251">
        <property type="entry name" value="FP_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25298">
        <property type="entry name" value="Baculo_FP_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FP protein C-terminal" evidence="1">
        <location>
            <begin position="216"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30751" checksum="18F12C51187E68A8" modified="2020-12-02" version="1">MPETIKSLKIENDSLKSQIVILQKDFKSFQEAMDKKLAKLPCVCNDKTVNLSDSEAEKSLNFLGNQVDDMSRFREFAEKEFKQLNKRLEGVAKKSAELSDAIDDIQKYSYQYNVKLLGVPECNERETAATSTELCVRLFNGMGVEVKAHDIDIAHRVPHRNAFATGPKPIVCKFVRRVVKDEVIRQRKEASKVKSEALGLSSDASLCNVLVMEHLTPKAQNLLAEAKRFSKQHNFKFCWVKNAKIYLRKNEESRHIFINNLSDLEGLNVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JV84</accession>
    <name>A0A7D9JV84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Polycomb group RING finger 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A033900</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022619">
        <property type="protein sequence ID" value="CAB4036992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JV84"/>
    <dbReference type="OrthoDB" id="1305878at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031519">
        <property type="term" value="C:PcG protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000033">
        <property type="entry name" value="Polycomb group RING finger protein 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051507">
        <property type="entry name" value="PcG_RING_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45893">
        <property type="entry name" value="POLYCOMB GROUP RING FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4036992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="21430" checksum="2C19D1966AEEED4B" modified="2020-12-02" version="1" fragment="single">MEQRIKMKELNEFITCSICSGYLINASTVTECLHTFCRSCIVKHLEENTHCPKCEKVIHHSHPMNYLRLDRTMQDVVYKLVPSLQNREKKREDKFKRKNNPTAKSKAKSHNSLLSKSYKRKNDYHRNDEQVAICLECQRLPENKRSIQPLKRKYLRLSSQATVQILRKYVAKKLKLKSHTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0N8</accession>
    <name>A0A7D9K0N8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053693</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025663">
        <property type="protein sequence ID" value="CAB4039628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0N8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="299"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="348"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="361"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="551" mass="60452" checksum="4AB9A9743165BFBE" modified="2020-12-02" version="1">MADRFVHGNKPLDSTSDDSRSSVVQNDQIITKDDKLIVENQKLTFENRHQVGGGIIDLRQNAVDNTGSLGDTGTSCDNVADRAKKAVKDKTDIDHIVNCQDKEDRNKATAENTNKKSTEQHCPSVSQVVDAISTNHVIDRENSAFQDSLQTKKTSQLVDRQKLTLQDDTRATGVSQNVQIITEDDQAVSKQENKAHECDSTSTNQNAFNRKQKAVGNSVTLAHYVVENQHQIGEGIILGTSSENVGDLAKKTGEDHQPARGKINRQQLTVTDRNLTDHVVNCPNFHSFGIVDRNKATVEDTNGTSSEHSTKQQCPSVSQVVDATSTDRVLEREISAFQDIQLKKTSNLADHQKRAVEDDTPTTSIRQLGAPNTTQITGNQVNQLVDCSVQLRNVDKMVNLQKRKVENTTTSAQVTVTTKIIGEQPNHHLSSDTKSVKAGNMVDCEKETVEHTVPSAQVTGVNSNGEVNHMIHGSIQIETADNMVDHQTQKPTPSVHVTGVNGDSLPDTQCFGGQPSHSCDSYLGGVERQELRRRSTASPNEGETFQTTFFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K488</accession>
    <name>A0A7D9K488_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070172</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026528">
        <property type="protein sequence ID" value="CAB4040253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K488"/>
    <dbReference type="OrthoDB" id="5969991at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791:SF5">
        <property type="entry name" value="CLR5 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46791">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13384">
        <property type="entry name" value="HTH_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="126" mass="14425" checksum="190A4C4D18968260" modified="2020-12-02" version="1" fragment="single">ECFLQDDVDENGMLNVNISVENSGLSERPRFHVSHKQLQALHSDCGMRWSDIARTLGVSERTVRCRRHQFGMPVEGREFSNISDQQLDDFIARILQATPAVGLRMIMGSLRHHGHTVQRHRVLHSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K8F9</accession>
    <name>A0A7D9K8F9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037611</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030219">
        <property type="protein sequence ID" value="CAB4042488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K8F9"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="353" mass="39797" checksum="54DDE2EFE6DE2F38" modified="2020-12-02" version="1" fragment="single">MFNEYFVSIFSSDSDVAFEHGDRLHNVDFENITLSEEEVLAVIMNLDHNKAHGPDNIPARLLKEIAAQIAPSLCSLFNKSLRIGVVPDDWKLANVVPVYKHGEKAEVENYRPISLLSLISKPLERCVFNNIKHHAYDQINPCQNGFVPKKSCITQLIEVLDHIGRDLDRGKQIDVIYLDMSKAFDKVSHAKLLHRLREFGFGGSILKWFGSYLTNRYQQTTVLGATSRPLPVTSGVPQGSILGPLLFLLYENHLSNSLTNSRIAIFADDTKIFKTINSISDASALQNDLSNFQESSSTINLELNNTKCKVLRVTRKHNKITYPYQLNDTILECTDCERDLGVLTSSTLTWSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KKC9</accession>
    <name>A0A7D9KKC9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A034661</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037270">
        <property type="protein sequence ID" value="CAB4045019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KKC9"/>
    <dbReference type="OrthoDB" id="5988169at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22394" checksum="EAB9BAD73C72B3A3" modified="2020-12-02" version="1" fragment="single">KETKQTFNFQRNTFPMRSVDDGESSYASRGSKPIYAYSVDSSSIHSQTNPNNAYAVPEGSDGSPLVRLRNNSLALGSDASSYDVPYSSVAEIGVDPTTPHSTGETPRHFANALFTERELEDTRGETESLDSHAVFNPIYEPNYPQVSHPENVQGGVEDFPDIEGPIGVHSYEVLFLPPPPPEYSDFGDDTDELPHAYTNAVTDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L8D4</accession>
    <name>A0A7D9L8D4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022559</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015109">
        <property type="protein sequence ID" value="CAB4027903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L8D4"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="331" mass="38601" checksum="A16FD761AFF5A277" modified="2020-12-02" version="1" fragment="single">VPGNESGDTSRSEAACLQDWAEENRMPLNLEKTSEMVVRRHTSVVLPELIPSIKRKTWLKLLGVTLQDNPCKWDLHFEEMLKKASGQMYIMRVCKYYGLSIKQLDLLFDSLIMSIFTFAIELWGCAYDGKYLNQIDKFIKRAHKNGYISKRTHIKEIRDKRDKKLWKKITSTEDNALLELLPEKRSRLLRPRWHDRYVLSKLAWRFTVATLSKTWVTENIDSIANKYIRRWLEVPISGTLSTVFLTNNKFGLSIYPPSVKFIQCQTVLRKALKSSPNESTNDLWRATSYHTNIQYDAYNSTKEVLKDFRSGHENKLLNQLTSQGSFFCSVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LA66</accession>
    <name>A0A7D9LA66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085274</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015684">
        <property type="protein sequence ID" value="CAB4028739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LA66"/>
    <dbReference type="OrthoDB" id="5958745at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00186">
        <property type="entry name" value="FBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="258" mass="29194" checksum="172671A1E27F7701" modified="2020-12-02" version="1" fragment="single">MANFGQILSIYLLLRYARTCSSQQSSAWFKLTVSGHRLTGHVINELNTYLVECCLYCLRKSSDCKSSNFKTTKHQPHSKSCQPINAMKTTHPQNLLADKNYDNYELLALKKKIEKQTPVKYAKSCDDLYKSGKTTIGVYTIDPDGLGAFSVRCDMESTPGRGWTIFQRCVDGSEDFYRNWTDCKTGFGNLSGEFWLGLDKIHRLSVAVQNVLRVDLERFENETAYAVYESFSVGNESEAYILNVANYSGTNVLKTSQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LUL7</accession>
    <name>A0A7D9LUL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A041649</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026937">
        <property type="protein sequence ID" value="CAB4040538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LUL7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="227"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="295"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4040538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="321" mass="35729" checksum="69961EB120CC7ED0" modified="2020-12-02" version="1">MADIDMDEMNRVDDREAEEAGTAEEETSFIDDDDGRRHESILIPIGFNPDVDGSRPSGSTPNIRRDVGDVKIIISKNGKMIYSTDKNKEFVINEYKDLIRKAKIEHSKTPAALVEEQLERQNLDAPQELVDNVMENIIKRMDDELSNQSEAISNSTVITENELRELRGILNDVNKKALLYEAMADMTELKADEIRLRSNERPKGTTKTETSDLTRLERFRKWAKENIAGISAVAISAAGIITTIIMGARSAARKGARATSKFTKAVANQAGKVGPVLASVLNLIAKVLGWGAKGIAFLAKNLWILALALTYFLYNEYKKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLX8</accession>
    <name>A0A6S7FLX8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein uL3m</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">39S ribosomal protein L3, mitochondrial</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A072324</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000327">
        <property type="protein sequence ID" value="CAB3980824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLX8"/>
    <dbReference type="OrthoDB" id="274683at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005762">
        <property type="term" value="C:mitochondrial large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000049">
        <property type="entry name" value="39S ribosomal protein L3, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000597">
        <property type="entry name" value="Ribosomal_uL3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019927">
        <property type="entry name" value="Ribosomal_uL3_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03625">
        <property type="entry name" value="L3_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11229">
        <property type="entry name" value="50S RIBOSOMAL PROTEIN L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11229:SF8">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL3M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00297">
        <property type="entry name" value="Ribosomal_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00035396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3980824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="40067" checksum="EE68BB93E18939C6" modified="2020-12-02" version="1">MADYKVIFTCLFSSVSRHPRCLLRTLSLRQRLFTTGSIQRKENEGENSTNMFEFYHKNPEHLQERQIREIKFDVDQELMVEKEKTERKPPVIEPEKAAWSEGCKRVGAIGVKLGMMPLWLKNGQRVPVTVVQIKDCQVLATRISRELGGNDDVTALEVGAINEKDLEKVNKTDFGRFVKYGVLPKKKVSSFSVSPSALLLPGTEILSGHFYPGQFVTVQAKTKDKGFQGVMKRWGMKGQPASHGQTKTHRKMGATGGGGTPGRIWPGKKMPGHMGNKNRTIYGAKIYRINTKYNVLYIHGQIPGPNGGMVKVKDGVAGHKQPPPYPTYLPHHHGPLPEELIDESIQDFEDDSISFSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNS6</accession>
    <name>A0A6S7FNS6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cyclin-F</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A009963</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Microtubule organizing center</location>
            <location evidence="1">Centrosome</location>
            <location evidence="1">Centriole</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Perinuclear region</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the cyclin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000180">
        <property type="protein sequence ID" value="CAB3979247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNS6"/>
    <dbReference type="OrthoDB" id="5590282at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005814">
        <property type="term" value="C:centriole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048471">
        <property type="term" value="C:perinuclear region of cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd20521">
        <property type="entry name" value="CYCLIN_CCNF_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.472.10:FF:000038">
        <property type="entry name" value="Cyclin F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039361">
        <property type="entry name" value="Cyclin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013763">
        <property type="entry name" value="Cyclin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004367">
        <property type="entry name" value="Cyclin_C-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006671">
        <property type="entry name" value="Cyclin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10177">
        <property type="entry name" value="CYCLINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02984">
        <property type="entry name" value="Cyclin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00134">
        <property type="entry name" value="Cyclin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00385">
        <property type="entry name" value="CYCLIN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01332">
        <property type="entry name" value="Cyclin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0195">Cyclin</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="592"/>
            <end position="711"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="618"/>
            <end position="648"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="679"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="700"/>
            <end position="711"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3979247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="711" mass="80320" checksum="964F5BA75DE1A208" modified="2020-12-02" version="1">MGYTKRYVGVRRCYRKAFVHLPDDVLLLVLQYLSVKDLYKMRLVCRRFNSSIVSTPSLFIHTSFAGIWPSPNNFPIFLKATSVGNIEAVIKLGISYLYNEGVSTNYSKKISSSANEQNARNATEYFCQAENITSQTVAFIWTFIRPPWAPGIMCCKRHVFNGIRKYCEDREDASPSLLYSVGKILSLLQNADGEPDCKAKARYWLEKAALRGSSFAKFELWKMNNKLNTEPAVNLRQLRDLRECLQQNKEAQLELAMNYAAGNIGNLDQATAAAYVRQFMATSSPCRIRGIFKFQHEVTRVMRYILVDWLVEVCTMKNFSSHVLHAAVSYVDIYLLRRKGNRGQLQLLGIGCLLIASRFFERNIVTIRESSWLTDNTYSYEQVVRMIGEIMSCLRGETQVLTVPNYVRLCSELMKVERKTEDLASYIADMSLLRVGSGKFSCAVMGFSCALLAQLICFPEMVWCPSLEIYLPFDRNTIVACMYYLVEACLAQDCPIDKQNGRLKAVKERYESPNFSNVSKLKMPPKDEMKDLIIHFRLFNETADTVADETTLNTTACSIASSGYDGDEEDLGEMMDSDDDEVMAWYDDGLDGIENVASPKETPKNTPDGANTEHIERSTPSFLSPSWFQDVDQSGLTNNRSVSLSGDSSRGGHAVPRAYNSVSTPASMHRRPLMDVNNRPHSSGNSGTRKAHAQFRPIDNTPTSENMDMNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXR5</accession>
    <name>A0A6S7FXR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">PDZ and LIM domain 5 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A007945</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell junction</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000818">
        <property type="protein sequence ID" value="CAB3985024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXR5"/>
    <dbReference type="OrthoDB" id="5911912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005912">
        <property type="term" value="C:adherens junction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031941">
        <property type="term" value="C:filamentous actin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001725">
        <property type="term" value="C:stress fiber"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051371">
        <property type="term" value="F:muscle alpha-actinin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030036">
        <property type="term" value="P:actin cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061061">
        <property type="term" value="P:muscle structure development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd09361">
        <property type="entry name" value="LIM1_Enigma_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.110.10:FF:000008">
        <property type="entry name" value="Paxillin isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.42.10:FF:000055">
        <property type="entry name" value="PDZ and LIM domain protein 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.110.10:FF:000069">
        <property type="entry name" value="Uncharacterized protein, isoform Z"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.110.10">
        <property type="entry name" value="Cysteine Rich Protein"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050604">
        <property type="entry name" value="PDZ-LIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001781">
        <property type="entry name" value="Znf_LIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24214">
        <property type="entry name" value="PDZ AND LIM DOMAIN PROTEIN ZASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24214:SF38">
        <property type="entry name" value="PDZ AND LIM DOMAIN PROTEIN ZASP-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00412">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00595">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00132">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="PDZ domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00478">
        <property type="entry name" value="LIM_DOMAIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50023">
        <property type="entry name" value="LIM_DOMAIN_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0965">Cell junction</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0440">LIM domain</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="111"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="117"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="228"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="280"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3985024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="472" mass="50970" checksum="C7ABFFEA9EB7C9F8" modified="2020-12-02" version="1">MSENNYEVVLSGGGPFGFRLQGGKEFGRGLAIQSITSGGKADGKGICSGDSLIAINGQTTEGMTHIEAQNAIKRSQTLKLNLNRKAGNLAASMGKKDAVVTVETTHSAKVDYKYNPKPKPFGAPKPAPAPVKSPTPKPAPPVEKKDDNLEDSEVLKMLRSSNISEQGTGLRRTDHGRRISRGSDNNDEDLPPPPPEAYEEENIGPQSKTFRLLEKSINSGEDHPSALSRPSANPPTTTRISAPKPYSPPSHSRPPQAITVHTGSPPAPAYNKPARSYGGAPAPEAPAAPVSHPAQPTPAQPRVNAPPQKKPGTPSCEHCGEVIQGPFVSALGRNWHPDHFRCGGCQCSLQNIGFVEEGGLMFCENCYNHRFAPKCASCNQPIIGVSVKALGKVYHQDHFTCNHCGKQLAGEGFHVENGDPYCSQDYKELFCVKCYSCKQIIRAGDRWMEAVNQKWHADCFRCMVSYLAICTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZ60</accession>
    <name>A0A6S7FZ60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endonuclease domain-containing 1 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A037384</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000812">
        <property type="protein sequence ID" value="CAB3984988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZ60"/>
    <dbReference type="OrthoDB" id="5967827at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.570.10">
        <property type="entry name" value="Extracellular Endonuclease, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044929">
        <property type="entry name" value="DNA/RNA_non-sp_Endonuclease_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001604">
        <property type="entry name" value="Endo_G_ENPP1-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039015">
        <property type="entry name" value="ENDOD1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020821">
        <property type="entry name" value="ENPP1-3/EXOG-like_nuc-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21472">
        <property type="entry name" value="ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21472:SF7">
        <property type="entry name" value="ENDONUCLEASE G, MITOCHONDRIAL-LIKE ISOFORM X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01223">
        <property type="entry name" value="Endonuclease_NS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00892">
        <property type="entry name" value="Endonuclease_NS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00477">
        <property type="entry name" value="NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA/RNA non-specific endonuclease/pyrophosphatase/phosphodiesterase" evidence="2">
        <location>
            <begin position="76"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="ENPP1-3/EXOG-like endonuclease/phosphodiesterase" evidence="1">
        <location>
            <begin position="94"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3984988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="40084" checksum="2F803F2769F1F5AE" modified="2020-12-02" version="1" fragment="single">ELNKGPCRQKHDECTFQNTIKIRKSRSFLACFVWLDNFFTARLLILQFNLARQDLKSSLRFFHSYLHQCLTTNVRRRSFYAVVFPVGHSIKKIKTTYTVLLVYSKKYQTIANHRNGWRPKRKWWEKTDISLQANDAMFDKQKSFHKGHLLPVGIYSFSEEHAKSTFTYTNAVPQYSTFNSGIWSNYEGYIRTYAKNKCGPNSGGDLYLITGVTMLARVGDHKVEKIVKTSDYLKNKIRIPRSMWTVGCCVAAGGEVLGNFAVIGNNLKSKIRVQMTELKVKKLEAIILEDVQASPSGSSATSIQLFPGKAQCSDNGKQIVFKAEQTRTFRRVRDATYQRKQPSKKMTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6F2</accession>
    <name>A0A6S7G6F2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000756">
        <property type="protein sequence ID" value="CAB3984579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="158"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="166"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1310" mass="148541" checksum="644415AAC6078A1A" modified="2020-12-02" version="1">MTNIADSVFETETAEISPVKTCEIITNNNPAVTESTPLKHLSWSYNTFTNDMKGVKADITVIQKQITSINNVNTSINAIIESISKVLDSTENRQISYDTRMETLLKEFSIILDEKNRAINERDITIKQLQANFRLSPGTAAYVDDSDEYAISTANADACAVPSDSPPEKSAHADDASAPISQQCGEDNNGEYDKETLNRTDNIVNPERTKKLVKPAIMCNKTGQEENVNSNVSMQLDYNPTRENPVETLPLTKMSPRTISHNNTNVIPDEVLHTPIALLGADSSNVCMEDQLKAYRRKHQTVNRIKQCPNPMQPKKRNPIANELVNPEQLRKVRHTKQIPTTLTSARIHNPANCVQITLATAMESTVACAPENVFVPSVLLSNVMSLAPKTDEIQHCVVHANERLKFESTLPSTKIPNLLICNLRSLTSKVDELDAVVSFNQTDMVCITETWLSPAIPDNLVSFSNFNLFRNDRLVSNGGGVCAYINSNIYCRRIEEFENSSIESLWLSVRPKKLPRSVSVILLAVVYHSTASRQTENVELYSHIQTNVDSFLYSHPEALVLITGDFNFRSTGLDANHLKRIAGLTQIVKVATRADVTLDWCLTNSKVDNIYESIQLPPIGTSDHYTILMKAQPSPSKPDNSHIWKRDLRDSRIRPFGRYITTFDWSPILDIHDCDTKYKKFNDTMTVMIEKFFPLERIKVRKCDKPWMTSSIKSAIGRRQKALHESGKNSDIYKYWRNRVQSCIKVARKIYYMRSVEKLKNSNPARWWKEVKAIGGLSSKNSWYSQLFSDDVRNCEELAENFNNFLTALTSHFDPLTLDEIQEGLEVPNHYLVDAQQIYMKLSKIKTTKSPGPDMFPNKILKTFAFELAPVISDIFNSSMTQGTFPRALKRSIVVPVPKVSPPKSIEDDLRPISLTSQIAKVMEDCTLDNFFPEVVNKLDTKQFALPKKSTTHALVYLLHSILVALERGSCTARLFFADFKKGFDLVDHNVIIKELTLLGTHPSIIRWIKAFLCDREQCVRVGTSMSSWKKTNGGLPQGTKLGPLLFAVLINSLLKNWPSRIKFVDDTSALEIIPRFSSSLMPLVVNEISDYALERGMELNYKKCKPMLINFLKYKGSDDENPIYVAGKPVETVSSFKLLGVWISNDLSWNTHVDMVLKKANSRLYALRLLKKAGLQASDIVQIYISFIRSRIEYASPVWSSIPKSLSDILESVQKRALRIAYPDLLYDEALEISNLQYLSTRRDISCKKFVESLRRDVSPYNPLTQIMEIRPGVKTHDYDLRNDRTAEQPLWSETTERLKNFVTRKYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9G4</accession>
    <name>A0A6S7G9G4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Paraneoplastic antigen Ma-like C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A059963</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000829">
        <property type="protein sequence ID" value="CAB3985106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9G4"/>
    <dbReference type="OrthoDB" id="5988102at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048270">
        <property type="entry name" value="PNMA_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14893">
        <property type="entry name" value="PNMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Paraneoplastic antigen Ma-like C-terminal" evidence="2">
        <location>
            <begin position="170"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="318"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3985106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="39511" checksum="66ED40FDEDC53006" modified="2020-12-02" version="1">MTEALNDDNHEDSTDPVNPEISPLNTQENFPDLKRGIKLPQSPLQWSTANDFFKLTFLNHPITPDDLNNNINTMVTVVYNYFSGNFGHVDNNSSVEFERKYQTFSTKDLKKALKKLKLENGSILEIKFVAKKLRIHLNKSNNTELHNSDSHASADIDHDHLIVHATLSQRWTKWVKSFEYFLVASNVTDKKRQRALLLHLAGPEVQEVFETLSDTGDDYATALEKLDAYFKPQKNIPFERHMFRQATQDPSETMDTYVTRLKRLVQTCDYGTLSNEMIRDQVLEKCYSTLLRRRLLREETLTLDVILRIARALEASDRQAQQIEGTKNSESDAEKSSAYVIQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9R4</accession>
    <name>A0A6S7G9R4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001327">
        <property type="protein sequence ID" value="CAB3988455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9R4"/>
    <dbReference type="OrthoDB" id="2018023at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000813">
        <property type="term" value="C:ESCRT I complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043162">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14316">
        <property type="entry name" value="UBA2_UBAP1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1920">
        <property type="entry name" value="UBAP1 SOUBA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015940">
        <property type="entry name" value="UBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038870">
        <property type="entry name" value="UBAP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042575">
        <property type="entry name" value="UBAP1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023340">
        <property type="entry name" value="UMA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15960">
        <property type="entry name" value="LD44032P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15960:SF5">
        <property type="entry name" value="LD44032P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50030">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51497">
        <property type="entry name" value="UMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="158"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="265"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="316"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="401"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="534" mass="58054" checksum="5A45D15200E1FF29" modified="2020-12-02" version="1">MERASSIYGSSSALRGVQLKIGEKFKPPAKVTLPVGWKTRDPSRLLSISYNFSLEKSVIERIKAEREAREQHEQAQKIKELKIITSTANPAVANMGGDILQPTTATNTTTTTNALNTTNENKQFNYKDFEDNTDTPFEAVELQCINNMEALKSVLQPDVETDSATSSQPQIPHATNDASNVPVMTSGIPIMGAPNPFAAHVPSRSLETNFPISGSPPAPMSAANLYPTTQMGQTVPQYSNPFLPHNSQTAGQEPISTGLVSVSPHSNTVSYSSGNTVSDTNRRISLPGAMRVLPAAPARPPPRRPVSVPNQGVTSEMMSALPSQGEHPSTTPAQKRPVPKPRSKLPPLRNGPEAGPSYEPLYDVPPPPIPPKKSIGKNRNMNHAQKPDVSTDDANLKRFPTPLPPISPPKPEQPPHVNDPCSTMSAEERQFVNQISAMGFPVARVARAVKNLGCKEREVIEFLISVNDMCNLGYSEGQVEMVLKDNNDQTKAVEFLKLIVQFKELGFQEEKIFEALKKSECDSNKALDILTCAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GG60</accession>
    <name>A0A6S7GG60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012181</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001056">
        <property type="protein sequence ID" value="CAB3986687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GG60"/>
    <dbReference type="OrthoDB" id="5979419at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="33620" checksum="450E7E0864FF09D5" modified="2020-12-02" version="1">MYSGIRQTLVTLRERFWVLRGREAVKRNLRKCIICQKHEGIAFKPPSAPDLPTERVSMEPPVTFTGLDFAGPLYVLSEKENVSTQCQETNKVFVCLFTCASTRAVHLELTQGLSVQSFLMAFRRFASRRGVPSMLISDNAKTFRSASKEIQTSRSQDVLSRLANNRITWTFIVERALWWGGFWERLIKIIKRCLKKIVGRSTLTLEELNTVLIEIEAVINARPITYVYDDEESLSYRLTPSQLINGRQITPMPNSKHYEIMSTSNVLTKRAKHQRKVLQQFTDQWKKRVFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GM22</accession>
    <name>A0A6S7GM22_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038457</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001732">
        <property type="protein sequence ID" value="CAB3990829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GM22"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="135"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="259"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="261"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="36618" checksum="D76280C9898435F5" modified="2020-12-02" version="1">MAEQDDVAQVLEEEEQSEGEVEENESYEGDDEHVETNDEQEEPEENNVEGEKCSGDEMYIDDLCESDDEKDEKHALSDELFKRKTIIEQATAPNEEEDYVRSHDDVMKSVKNKDDLAGMKIVNFLNKKDKLKGVQKATGQLPKPPDAPNPGSVTPGQRRAQRPGTTVDAANERIMEIFKQEGVSRGGNGNVVHKGMRYNIPYTDLLYDLTHNTTEKTANLTSVESEQAMRLLRKIKMPASHIRSTCLRGQYIKTRTTRVLPETPSTTSEEDSFTSTPFGRPPSRIPQPLRRHTASAPYNRRSRTAHYTPYQQLDRQIRDLLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTQ1</accession>
    <name>A0A6S7GTQ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-G gap-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043238</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002264">
        <property type="protein sequence ID" value="CAB3993459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTQ1"/>
    <dbReference type="OrthoDB" id="5970406at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055469">
        <property type="entry name" value="DUF7041"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33327">
        <property type="entry name" value="ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33327:SF3">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23055">
        <property type="entry name" value="DUF7041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7041" evidence="1">
        <location>
            <begin position="234"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="496" mass="55427" checksum="25BAF76DBC6F5F35" modified="2020-12-02" version="1">MALTIDEVLIKIGIFRQYQWYLLSIIGYVALSLGSFPVMIVTFITAEPEWKCVDGYMNNTVCRFNKSITLTSDDYKARCKMPREAWTFVDDFTSTVTEYDLICDDSILLSIAQSCFWVGMLVALLVGGLISDNFGRKIVLYCGCVLTILATWIMIFPKAFVVFIVCRIFIGVALSSTQSFADENICESSAYKHGVDFSRQSAMDSQQSHASSSTVSTSDVQPTASPVTSISIKLPRYWPSDPELWFSQVEAQFTTRGITAERTKYAYVVGSLQPEVAQEQKRLNQLLHAEELGDRKPTQLYRRMQQLLGDIQLEPSIMKQLFLQRLPSNAQLILASTADEMDTASLAKMADKIVEVAPVHSTLSTVVPQSAPSPTAQSTEMRELRDLVAQLTTTINNFSLHTSPQDAHTERRRSRSPTRRSSSPFHNRELTTTEPSPRSIFCWYHTKFGASAKKYPGFSPSQTSTTPSSALIFFAISTFSLTYAHAALLTQLPTFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GUN5</accession>
    <name>A0A6S7GUN5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A007483</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002288">
        <property type="protein sequence ID" value="CAB3993586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GUN5"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="542"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3993586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="542" mass="62080" checksum="8AA9EC2BEFE9B403" modified="2020-12-02" version="1" fragment="single">MAKHFLKFASWNIEGLLSKIDDSEFISKLHKFDLVSLVETWLPHEKCNINIDGFHSFSKCRKTVSQNSRRSSGGITILVKSTLKKGIKFLDKESSEEFVWYKLDKTFFNLKHDIFICTVYIPPQNSSRESRLNTDHFENLQNNIYKFASKGNIILCGDFNARIGVVEDFVDNKFLEDDKYITPSLDQRYSKDHHVNAYGKSLIDLCIGNGMAVLNGRTNGDLLGQFTCQTYNGASVVDYVVISHSLLSFVVGFNVEDITEFSHHSCLSFILQIKYPQNSGDTFKLTPHIKSFIWNESQKDALRECMSSNEVENKLESLFFQHKGVSSDEATYTDILVANFSEILSDTSQKVLNTKRQKKKIKKENNPKDFWKLVNSIKAQKPRTSHEILPSEWFDYFKNLNKININTEVASSEAQIIKDFNIWALGTNDTLDRPVSLEEVYKLSKRLKNKKASANDSLSNEIIKLAVAVMPSYFDKLFNKILSNGHFPSLWSKGFIVPIYKSGSNIDPNNYRGICISSCLGKFFTLIMNERLNKYLDENNIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7L9</accession>
    <name>A0A6S7H7L9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052364</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003757">
        <property type="protein sequence ID" value="CAB4000116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7L9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13264" checksum="57C9062C547FC3BB" modified="2020-12-02" version="1">MAGVIALDYIALLIPASSQNKGRTLKTFISRAESALWFSKHFGLDVDSMLVKESDTGKKHTVLEAGTKETQDPTANSEPGKLPGSKVHSLRDVIKDHVVNGKEEYSTLKESFGEIFSEIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7N7</accession>
    <name>A0A6S7H7N7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A019835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003803">
        <property type="protein sequence ID" value="CAB4000309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7N7"/>
    <dbReference type="OrthoDB" id="5971167at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00037">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.100.10">
        <property type="entry name" value="Mannose-Binding Protein A, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001304">
        <property type="entry name" value="C-type_lectin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016186">
        <property type="entry name" value="C-type_lectin-like/link_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050111">
        <property type="entry name" value="C-type_lectin/snaclec_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018378">
        <property type="entry name" value="C-type_lectin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22803">
        <property type="entry name" value="MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00059">
        <property type="entry name" value="Lectin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00034">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="C-type lectin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00615">
        <property type="entry name" value="C_TYPE_LECTIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50041">
        <property type="entry name" value="C_TYPE_LECTIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13426" checksum="C870E66F3B77699A" modified="2020-12-02" version="1" fragment="single">TYKTTWFKARAACQKLGGDLAVPINNKENSAIFKIVKQKSQPNPFIGFRRHKDNKFYTVQGVKPTFMKWQPGEPNGPNHEHCVQFYKSDGKWNDIPCSHQNSFICQRHLIKRKYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H868</accession>
    <name>A0A6S7H868_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">guanylate cyclase</fullName>
            <ecNumber evidence="1">4.6.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A087351</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.2" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020003978">
        <property type="protein sequence ID" value="CAB4000994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H868"/>
    <dbReference type="OrthoDB" id="6127067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008074">
        <property type="term" value="C:guanylate cyclase complex, soluble"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004383">
        <property type="term" value="F:guanylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019934">
        <property type="term" value="P:cGMP-mediated signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070482">
        <property type="term" value="P:response to oxygen levels"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.450.260:FF:000002">
        <property type="entry name" value="guanylate cyclase soluble subunit alpha-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1520.10">
        <property type="entry name" value="H-NOX domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.260">
        <property type="entry name" value="Haem NO binding associated domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038158">
        <property type="entry name" value="H-NOX_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011644">
        <property type="entry name" value="Heme_NO-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011645">
        <property type="entry name" value="HNOB_dom_associated"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042463">
        <property type="entry name" value="HNOB_dom_associated_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024096">
        <property type="entry name" value="NO_sig/Golgi_transp_ligand-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45655">
        <property type="entry name" value="GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45655:SF6">
        <property type="entry name" value="HEAD-SPECIFIC GUANYLATE CYCLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07700">
        <property type="entry name" value="HNOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07701">
        <property type="entry name" value="HNOBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111126">
        <property type="entry name" value="Ligand-binding domain in the NO signalling and Golgi transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0141">cGMP biosynthesis</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Heme NO-binding" evidence="4">
        <location>
            <begin position="4"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="Haem NO binding associated" evidence="5">
        <location>
            <begin position="218"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4000994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="45863" checksum="64B69DAD98D68ADE" modified="2020-12-02" version="1">MLAFIHKILYDLVVETYGVQKWNEISEEAGLSDNDTEEFCDSDNHGKVYEDEIIWKIVKIASRILDTSIDDLLDAFGVKFVNVSFADHHKMLTSLGCSLHSLLNNLDHMHQVFKEAKKYDGMKAPSFTCEPADSEGRALVVHYYSVRRGLEKFVCGALRQCAKVIYDVTVAVNVFKEFDPETGCVSFKIESSDASLIGQAKGENGQTQRNKSTSVKDLPISMETFCKAFPFHIIFNRNFEIVQMGSALVRILGGTLSNNNRRLSDYFTLVRPDIEWSFRSIQAQCNSSFLLHLNSSISEKIKRVINLTGQMISIPESECILYVGSPVVENLDHLRKQGLYISDIPIHDATRDLILVSEQSKAQGGLKKRLQSLKAKVQETSAELENEKKKTEDLLERFFPKMLLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HF30</accession>
    <name>A0A6S7HF30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A074912</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004476">
        <property type="protein sequence ID" value="CAB4002889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HF30"/>
    <dbReference type="OrthoDB" id="441660at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00037">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.100.10">
        <property type="entry name" value="Mannose-Binding Protein A, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001304">
        <property type="entry name" value="C-type_lectin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016186">
        <property type="entry name" value="C-type_lectin-like/link_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050828">
        <property type="entry name" value="C-type_lectin/matrix_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45710">
        <property type="entry name" value="C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45710:SF26">
        <property type="entry name" value="RH26557P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00059">
        <property type="entry name" value="Lectin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00034">
        <property type="entry name" value="CLECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="C-type lectin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50041">
        <property type="entry name" value="C_TYPE_LECTIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="517"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="533"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4002889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="547" mass="62319" checksum="6BBF1606C1692DDB" modified="2020-12-02" version="1" fragment="single">TSYMWCASFQTKNVLQNVFFEACVPYFMKATVENLGESGLSLTAVLYNTSSQQTNFEESLFWILPGELQVDLTFENQGVLQTTKSRYYEVKMSYLRVNPVVVVRKWNTAWVHLSIDEMFKVFVFEVIHELQSRNASSLRHVYRDSASEISENLLSNYKLKGAEELSLSESIKIINDDRYSSINFHEEIKLHITFFVRLFSILFVGFSENTSPRIITNSLELQGNIAFTYISSPVLHEVQFFYHMSGKDIALVTVHDENEFMIILEAGVGLIVSPHHFLKVCYYTRCIKDVKTSQEYALSFKAIVNEGSASCVVAIDELNLTPKPCTSIKEGRWLVNLSFKSKIKLTQSRPIWRNPVKDCEGGTTFNNSCYKIVKKRSNWFDAIDQCKSLGGSLVTINSLQEAKFITANFTNMSLIWLGDIGQFSYGSMAWTNESHGNVSRNETFEKNGYMYANLSLNATYGNTTLKGTLKHETSQLMTRQEESFLCPVFSKEYILGVNCSYLLFTICEIPGEILDGEGGGKGGKERKGGWKGWKGRGRRIKWKERSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGA1</accession>
    <name>A0A6S7HGA1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107326933</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009789</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002507">
        <property type="protein sequence ID" value="CAB3994651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGA1"/>
    <dbReference type="OrthoDB" id="5958324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162:SF1">
        <property type="entry name" value="BED-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37162">
        <property type="entry name" value="HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="622" mass="70721" checksum="FD68A0D7A9B54EDA" modified="2020-12-02" version="1">MNMFNSNKQTTLSQKVIKAEVITTNFLVQHNLPIATADHLGPLFKEIFPDSKIAASYSCGRTKTSCILNEALAPQCHKYIIEHCQTHPYSVGTDGSNDTGVAKMNPVSIRLFDINRSKTVTNHFFDMCLTKGEDGAKAYRIFEAIEETFTRDSMLWTNCVSLSVDNTNTMIGAYNSVASRFLEMNPELFVAGCPCHLAHIAASHANDAFSDILGINVEDICIDCFYWFSKSSKRKGKLLEYFELCNQDYQAVLKHLSIRWLSLQRCIDRILKKYPSLNSYFLSEESPDQRFQRLCDRFGNPLLEPALLFQSAAISLFTHFNLLLQRDEPTVHVVQPAMESLARKLANRIVLPRVLIDVDSVTELNLDDESIFIKSTSLFLGGTTKFTLNRLRNDGTINDSDYNKVHNAAHHYFKSALKYIFDKFPIGNDVLCNAVWVNVPKRLDTTWESVQFFLEKFSLLTLLQGINPDILHEEFVDYQTLPDDAIGQRAWEEAKVVDGQDEDGNEIAHHRVDILWWHLAHLKVPGTSQNRFKNLSKVAEIVLVIPHSNAEQERLFNIVRKNKTDSRSNLKLDGTLLSILAMKTTYPESSTPCYKWKPDDEVLTNSKKSTVSYNKKHIGDAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HIX9</accession>
    <name>A0A6S7HIX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004943">
        <property type="protein sequence ID" value="CAB4004586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HIX9"/>
    <dbReference type="OrthoDB" id="8059033at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33776:SF4">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="359" mass="40915" checksum="9C4893EF80328106" modified="2020-12-02" version="1">MYVIVLNNKQTILSIHAIIVINFSPLQALPANKPAIDPQKSSSTPQNSIISSELVSISSRLSYIWISTRDTILRKCSLSSNHHYGLQFQINNNLHLLLWILLSGDVAINPGPGSKYFRCLFFNAQSTTKLPVGTYNDAHSHYPSLCSDLPSGLRITQWNLRSLAPRINNTKLDEIKLILKDPGSETHILGVTESWLDESIDDTCIKINGYTHERSDRSSKTLPIDKHHAGGIIVYVKEDIPYFRRNDLESINVESIWLQLCPPNSPAHLICVAYRCPEYTISQWIENFEMQLNKAYVEGHQLTIMGDFNIDVSKNTSDSQCWLESMGDLHLHHADCYRINKSYRKYINTSRSRIYIRPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJF6</accession>
    <name>A0A6S7HJF6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A017122</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mab-21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002786">
        <property type="protein sequence ID" value="CAB3996040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJF6"/>
    <dbReference type="OrthoDB" id="269173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1410.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046903">
        <property type="entry name" value="Mab-21-like_nuc_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046906">
        <property type="entry name" value="Mab-21_HhH/H2TH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024810">
        <property type="entry name" value="MAB21L/cGLR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656">
        <property type="entry name" value="CELL FATE DETERMINING PROTEIN MAB21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656:SF69">
        <property type="entry name" value="MAB-21-LIKE HHH_H2TH-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03281">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20266">
        <property type="entry name" value="Mab-21_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01265">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mab-21-like nucleotidyltransferase" evidence="4">
        <location>
            <begin position="104"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="Mab-21-like HhH/H2TH-like" evidence="5">
        <location>
            <begin position="297"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF20266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3996040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="514" mass="59691" checksum="B97F350F83F5B048" modified="2020-12-02" version="1">MAQADTSIVTRLRNAILKICRYPRGCRRVSDIMARYLIPSIPEKEGKEMYKTLGDLYDEHVFNSANNYFDSQAPFQLEDILISGSVNEGTHKINLETESMSDTDFMLILKNIKVTEEEQKKGNLTVKENTAFVNLYLTDEDLIKMWADFLETSSNASYERSTKLSSMKLKERFREKYITYGPIFTPLANEDVEDVDEGPSIAVCSKIPGNAVTNQSKIMHFPLAEFDFVLAIKCDGWPLCAQEWLSRPRCWPNQDIVQAIVECGFHIVCKRSSEGDFRLSYSNAETILIQNLSDLQHKTYRAFKSFVNHYKNEWSSNIKKIICSYHLKTILLWYCEKSDPRDWTEERIVGHLLSLIDDLISALKERNLPMYFMPKYNLMEQLDGSTEVVEKIVELRFNLHSITEAIICEEPNILDWMNFLFNLSPGCLQPFKKGIEKRNFDPKDFLQNIYTTENLYNEYWINAAGKIPTRNDVQGKRAKSILTGPFMKYMDKCCKSMNRIYLNKPVKEEDENEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLE7</accession>
    <name>A0A6S7HLE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061838</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005412">
        <property type="protein sequence ID" value="CAB4006104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLE7"/>
    <dbReference type="OrthoDB" id="6154384at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="208" mass="23526" checksum="B134306BB7038AC2" modified="2020-12-02" version="1">MAKIASLSDARLVSLESRLQSDWASASENEKARWEKYVDEACRAVCRVIAPKASYELLATYRKSSVPGKAENLPRTQAENALVAAYQNAPTKSLKTQILSIYAPRYTAKELKSMHGEFEQLSDRQIKKAKAHAKTVGAGLTLPKIVHHRTRIDLSKLNHFLTFADQPYFYQDVSYGTRMLKLQSGERAQIMMPNVVRTVTRSTMIEQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HPB5</accession>
    <name>A0A6S7HPB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005730">
        <property type="protein sequence ID" value="CAB4007214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HPB5"/>
    <dbReference type="OrthoDB" id="10407191at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="113"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="226" mass="25716" checksum="04402553D50F400D" modified="2020-12-02" version="1">MKRRKGKESWEEFERRVGLKRSGEEDRNRAPEKRALGKIPNDILVQRMSTTPSGRLKKYEPLDTRDFVSFSDYEELSIENIKDACEEFYSAPAGSCDILASDRGPSCTKIRFLPPAEHDRPQQSRVQGSNSAPISPSKIGEIDGHHPETPSPKLARTVYPKSVSIGDLLRAGKLVRPPQLTTLSLEMFDVEKCEWIKNPLTLSIEIEETKFDSGWTFLLFKYENKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTN4</accession>
    <name>A0A6S7HTN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072161</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006172">
        <property type="protein sequence ID" value="CAB4008606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTN4"/>
    <dbReference type="OrthoDB" id="6377262at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="29299" checksum="006ED38E3071831F" modified="2020-12-02" version="1">MINDLDVKPHATDIWKFVDDISTSENITKGSNSKFQFCIDTINSWTSCNLMKLNSKKCKELRVCFLRESPDLSPLLIDGHALEVVRSHKVLGLVIQNDLKWNAHIESVVSKASKRLYIIRILRRGGVPAEDLLSIYFALIRSVLEYCCVVWHHALPLYLADDLERVQKRALRIILPGYSYREALAQLGCSRLDERRERHCLNTMKRIEIEGPLSKYVPLSRASSNDYELRNSNTLTTIKCRTERYRRSFFPVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYM1</accession>
    <name>A0A6S7HYM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MAM domain-containing glycosylphosphatidylinositol anchor 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045441</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007162">
        <property type="protein sequence ID" value="CAB4011475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYM1"/>
    <dbReference type="OrthoDB" id="6107927at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000998">
        <property type="entry name" value="MAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051560">
        <property type="entry name" value="MAM_domain-containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23282">
        <property type="entry name" value="APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23282:SF146">
        <property type="entry name" value="RT07201P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00629">
        <property type="entry name" value="MAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50060">
        <property type="entry name" value="MAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="228"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="287"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="161"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="287"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="35351" checksum="86B09B13CABC4DB2" modified="2020-12-02" version="1">MVSVWRLAGEQGYNWNQAQVAVNSQTASYQFVIESVRGKGKYGNIAIDDISLMDSCPPRDDSSRIIVIATTLAGGVFLSIEPVYETVPNVDWMFYEDVATNPNESEDISPKGRESLHDWVGEPSNADKTSGYETPVENEHQGPGNETVGKVNRGFYDDVATSANTSEDISTQGRTSDHEEVEVPSNAHKTFGRTELNKRPDTVKTGATGDGDYQAFLKEDGVYVIPAPEESQHKTPGQNETYEEPKLSPENPVYTELDVNRVHGRNTTGDGTYQKLVKRDSDYVIPAHERKESHEDIKMGSKLPTGYEELDQSKLEAEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I645</accession>
    <name>A0A6S7I645_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004865</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004187">
        <property type="protein sequence ID" value="CAB4001822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I645"/>
    <dbReference type="OrthoDB" id="6428524at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="544" mass="62412" checksum="65A29FB903DD1A56" modified="2020-12-02" version="1">MEAKRCFNCRRVSYNPEDFCLHLNQRQPLEEYISYNGLKALFGGQRPSVCADCVYDRLQNCQRCSRKVPLSLYNIEEWFKSTTDRVCLECMAIQATQVAFRNGLMLKDTLNQCFQCSTFKSIYSFLSICHFKQFDVVCRECHVHKDIQRYHIELNARYAQNLSLSPALTQVQVDLKAIDTLEKPVLSYARVLTDGSKLEQDETPTEQPDVLELNSSPKEAPSFFQTTMDVGICRMVLDAFKQSLYELEGKTRLELKILHQDPNFWQVVLRSKLIQMSQKFSSQATSRTSFQEAEIRSAYMGTYCCSHASLVQAAVKSGCFPPLSEFIQTANESKRALHVCCIGAGPGSEVLGLHEVLPKDTHWYLMDSCEQWSHSAQLLLRNIPGIKFNYGAFDITARFHPAHVFRKATLYAFVKFVSAIHFLKKSTTRFRELLRLTPAGSMFLFVDNAHHSVTRFIENLVFPDGVYEERKSCRENAFYALYTCYAELHPTEESMKSPYVAELVSLIKYWLDRSPLLDFHVNVFLLVKKAKPVVCKSNPVSEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IG41</accession>
    <name>A0A6S7IG41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066873</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008899">
        <property type="protein sequence ID" value="CAB4015919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IG41"/>
    <dbReference type="OrthoDB" id="1739706at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF37">
        <property type="entry name" value="OS05G0311600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="16"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="623" mass="70724" checksum="5E8D6F9624BA9676" modified="2020-12-02" version="1">MRNACGCPVTASFVSLNNDQKQWLFAVFNVSRFLCANGLAFRGSDESDIDTGDGLFLRAFSQLLFPLEEKWGKIHKNLPKNAKYTSHDIQNEVIEVLASLVKTKIAEDVRKAELFTIIADGTTDKNRKEIQGIVCRYLSSDGNVKERCINVKGIDDRSAKGIFKFIKEALVQFNISVDGLVSQSFDGASVMSGDYGGLQRLISDFCDRNVLYVHCFLHKIHLVVSFPMQNLDEVKEYFDTTAALYKFFKKSAVLESYNGTALKRLIETRWSGHFESTSHVHKNYGDLIQALMVASKNKKLSGEDRAQATGLLSLMEDNEDHVFVFITCMLMDVLKPIDIVVKQLQSPDENLISALHVVNAVKDDIKSKRENNTSNEKVKKMVDDFLESVRITSTDGVQVQRRPTRNTAVPSRFDDFLITDRIPSANNSRTNCQIFVECLDLLDAEFLRRFSEENIALWEAMLALSPSSDNYLDYDALIPLFEYAVNIPVIRDFYQKEKLSREDLEAECRIFSRVFKDKEWPKNAADKVDLSEVANIVIKEHQKGAPVLSSLYKVAITAGFTSMRVECVFSSLTRVDSPQRRSMKTEREANLAYLSFESEVLINDITFDDFYKAWNLKPRALSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7II12</accession>
    <name>A0A6S7II12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger 593</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044164</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010096">
        <property type="protein sequence ID" value="CAB4018634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7II12"/>
    <dbReference type="OrthoDB" id="24683at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051879">
        <property type="entry name" value="C2H2-ZF_Maturation_Protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46095">
        <property type="entry name" value="ZINC FINGER PROTEIN 593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46095:SF1">
        <property type="entry name" value="ZINC FINGER PROTEIN 593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="64" mass="7523" checksum="5339438F069B3054" modified="2020-12-02" version="1" fragment="single">MGRLRRKRMHKNIKDQKKKYRTRRRTKDIDQIHTDLEAGNSVKLSSQNDPDLPGSGQHYCLQCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IK11</accession>
    <name>A0A6S7IK11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Piccolo-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A023708</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009634">
        <property type="protein sequence ID" value="CAB4017633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IK11"/>
    <dbReference type="OrthoDB" id="10072397at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070382">
        <property type="term" value="C:exocytic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042043">
        <property type="term" value="F:neurexin family protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd08521">
        <property type="entry name" value="C2A_SLP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.150:FF:000006">
        <property type="entry name" value="Synaptotagmin-like 5, isoform CRA_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45716">
        <property type="entry name" value="BITESIZE, ISOFORM I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45716:SF2">
        <property type="entry name" value="BITESIZE, ISOFORM I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="93"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="401"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="112"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="138"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="403"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4017633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="420" mass="46240" checksum="2780A62E65482784" modified="2020-12-02" version="1">MDVPCPNEQASAGFYSPTGLDPNLVEIKPIRPPLDPLLAQTLSESPDDQLIRHHEYHSPHESKIAAAMRLSQEKLSNQLGTSHGAKTMTLAELAGSSPKKREQSSLFPTLNSAAPRSTSRSSVPSSSASPLNASRTSTPEVITEESSPLMDNSAGSLVRHSEFYKGSTSGIRRPSSEISFQAPRERGGSTLSDLIQQGNVDNDSLLGSDLSVNEGWMGSRESIYSNDGVYGNHDVSGEILLSYQYFKGSFKVKIFEARGLTAVDKNTSNPYVKVYLLPDQSRTGKRKTKMKHATLDPEFNQEMLYKISTADLVRRTLWISVWHYDRFGRNEFLGEVQIPLGDYQGSEVAPDWYPLVPTQSKASENEQGELVVALMYSPADKKRKSGQGAGKLYVKIIEGKNLPGKDADGLSDPFCKRYEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRA9</accession>
    <name>A0A6S7IRA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011631">
        <property type="protein sequence ID" value="CAB4021805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRA9"/>
    <dbReference type="OrthoDB" id="5989869at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19942" checksum="5BB45FBBAF5AB2E7" modified="2020-12-02" version="1" fragment="single">MTLRLTEEKAKKLMDLITKALQSPNNIQIREIARIIGHMVSSFPAVKYGPLYYRNLEHDKTSALKQSKGNYDGHMNISKNSERELNWWLHNVNTSFNTIEIPPVDVVVYSDASLQGWGAALGEQSTGAGWAQSEKNHINILELNAALFALKSFASEIKGKHVKIMIDNSSAVFIINNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IW93</accession>
    <name>A0A6S7IW93_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A044762</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012600">
        <property type="protein sequence ID" value="CAB4023635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IW93"/>
    <dbReference type="OrthoDB" id="5986544at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="23"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="203"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="29512" checksum="6A56AA0DE32396EF" modified="2020-12-02" version="1" fragment="single">MEKLGVISKVTEPTDWVSSLVVVEKPDGSIRICLDPKDLNHAIKRSHLQLPTTEDIISKMTGARHVSKLDASSGYWQTKLDEESSKLLSFNSPFGRYKFNRLPFGVSNAFEIFQLDIAEIIEGIEGAATAQDDIIVWGDTKEVHDQRLHEISAIIDMPVPQNKTELQRFLGMCNYLAKFIPDLASVTAPLRCLLEKDTPWHFEAEQENAVKRLKEMVTSAPVLKYFNPKDPIKVTSDSSKFGLGAVLEQQEEAIYSKPLIKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXQ7</accession>
    <name>A0A6S7IXQ7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012074">
        <property type="protein sequence ID" value="CAB4022646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXQ7"/>
    <dbReference type="OrthoDB" id="341259at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058056">
        <property type="entry name" value="WH_TANC1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24118">
        <property type="entry name" value="POTE ANKYRIN DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24118:SF99">
        <property type="entry name" value="POTE ANKYRIN DOMAIN FAMILY MEMBER 3C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25521">
        <property type="entry name" value="WHD_TANC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TANC1/2-like winged helix" evidence="1">
        <location>
            <begin position="15"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="509" mass="57973" checksum="2F4DF882BAB0AFE5" modified="2020-12-02" version="1">MQRAYEESDESVTGVVKCGFLPEIKMHDLNKVLELLSGYLVKDGSGKYYFSHSSVRDWLQDEESHFFCDVLNGHSIMANYNLKTLKVKYPLSENFVEYLSFHWEQSYPIAFLDLKLFSLRYLFHSSESGSSNVNVLISELGIKAIDLLHVAFRYNADGVPRLIKSKYMAMKVLDETDVLNEMTTKEKAEYLEVAIMSQSAKIVAKFLNSAYWIFSDSVILGLTWDNTALQLVPNEATPQLFFSSLGHGTFRDKILEFCVKKGLTADVCVPQFFKNTKGFDSSICWNEDVQEYFTKLKSGEKNVITLESLKEKPFYPEEAKVSEFTLEIIQKPLSEIERLLRDGKIYAEFKYAWHSVLSRKSLIIRHAAAVKMVDDCLKHGANSNNRGGPGVTALMLTREKLNDLFGDSPAVEQVVSLLLDHGAEVNQQDFYGRTALHYAFKCVDDTDPFLEEKLVRKQRVVKILIQHNANIYLKDSSGLSAINMAKRERHESWLKTDEASLTGTRSKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J2Y6</accession>
    <name>A0A6S7J2Y6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068931</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012472">
        <property type="protein sequence ID" value="CAB4023379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J2Y6"/>
    <dbReference type="OrthoDB" id="5985679at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029526">
        <property type="entry name" value="PGBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46599:SF2">
        <property type="entry name" value="PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13843">
        <property type="entry name" value="DDE_Tnp_1_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="397" mass="46516" checksum="4B8DE0EB88A83650" modified="2020-12-02" version="1">MPSKRFQILNKYFHISDPRQENPTDKLTKIRPLISKLENAFQDVYVPGKNISIDEGLIKFNGRLSFKQYMPKNPNKFGIKIWMLADSETYFVPRFQVYLGKQQNAENADENDAEEARGLGFKVVDFLGKPYYNTYRHFYFDNYFSSVPLLEHLLENKTYACSTLRHNRKYFPADLKKIKLKRGEMRTRQNENLVCLTWQDKRLVTILSTNVDPQPEVFGPLDERTGKRKAVPEEVREKPAVISLYNKYMNGVDVNDQYRSYYPVGAQSKKWWKYLAWFFVNISIVNGFILQNLQTDRRRRLKHLDFRLALARQLISTYNGYKKISSAPSGRKKDVPVGRNVKGHSLVKSSERKRACGMCSKAGRKRASGRTFESIYKCAQCNVNLCRERACFMEWHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8X7</accession>
    <name>A0A6S7J8X7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A032015</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014588">
        <property type="protein sequence ID" value="CAB4027077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8X7"/>
    <dbReference type="OrthoDB" id="76385at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13683">
        <property type="entry name" value="rve_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="58"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="221"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="476"/>
            <end position="571"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="645"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4027077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="645" mass="74317" checksum="0ABE1445D4C46DE8" modified="2020-12-02" version="1" fragment="single">MTHAHKGHQGIVKTKQALRTKVWGPRIDKDAEEFIKHCHACQSLGHGDPPPPLQQHKLPSKPWDRLHMDFCGPFPTGETLFVVIDSYSKFPEVEIMKSATASAVTEQDRIFAVHGFPTEIYSDNGPPFAKIQSSFVGLDNYAAQALINFVQSADSDYLCNVKTSKRDVVIPSGKQNDDDIGCIPDLKVTIKLSDETPVQKNYTAVPRPLYPEVKSYVEELLNKNFIRKSTSPYSSPVVCVRKMDQTLRFCIDYRELNKKSIPDRHPIPRIQETLDSLGGNSWFSVLDQGKAYHQGFMSVESQALTAFITPWGLYEWVRIPFGLCNAPAAFQRFMENCLDDLRDTIFIPYLDDVIVFSATFEDHVKHLRKEASNISWITAFTTNQDVLEEDMKHINSVSMNTISCGEIILAQRDDTEISKVIKWIESKPTSEKTSNESRYTRYLLYEWNKLELDKHGLLRRKSGLKNQIVLPKNSIEKLHHDQGGEFENHLFKQLEKLFDFGIGHSRTTPYHPQGNGQVERFNRTLLAMLRTLPETQKSHWKDHLQKMVHAYNCMRHESTGFSPFYLLFGRHPRLPIDMILNLESESTESLNYREYVNNWSEAMFEAYKFANEKSSQSRAKGKKLYDRRIRSSELRSEDRVLVRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGM7</accession>
    <name>A0A6S7JGM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">THAP domain-containing 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A026007</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016362">
        <property type="protein sequence ID" value="CAB4029721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGM7"/>
    <dbReference type="OrthoDB" id="5984406at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026516">
        <property type="entry name" value="THAP1/10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600">
        <property type="entry name" value="THAP DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46600:SF11">
        <property type="entry name" value="THAP DOMAIN-CONTAINING PROTEIN 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00692">
        <property type="entry name" value="DM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4029721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="260" mass="29382" checksum="4823E86C46A1D2C6" modified="2020-12-02" version="1">MAEPKHATKTTKNLGKYCVAGGPNNESCKNNSTTPGISMHEFPKPGNQLRNLWIKFVRRHRMADLQPSPYSCLCSSHFEPQCFHQRLGLGLEILRDASFISAQQQSEQACEGDISGVQLETSMEADTHTSDISRSACEECNKHKQRYIRLNDRYRKAKGVQQKLKSKVVQLEKANEALTEKLENQAQDLQQHVEQDEDMNAVDETIEESADYDGATLEPEWDPFGEEQINNAGIPSNQCSRNTVRVEARPRSTCTKLALW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JK39</accession>
    <name>A0A6S7JK39_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Retrovirus-related Pol poly from transposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A083358</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018720">
        <property type="protein sequence ID" value="CAB4032816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JK39"/>
    <dbReference type="OrthoDB" id="10064731at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000115">
        <property type="entry name" value="Polyprotein of retroviral origin, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4032816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="889" mass="101693" checksum="A77F80BB3ABC9465" modified="2020-12-02" version="1">MDATGGPVCYFIKNGVLMRKWRPPDVSADDEWAFRYQIIIPKSYQSEILSLAHDTPLSGHLGINKTLQKVTTHFYWPGVRKDVVQFCKTCHTCQIVGKPNQVIPKAPLKPIPAFEEPFSRVMIDCVGPLPKTRKGNQYLLTIMCVSTRFPEAIPLSNIKAKTIVQALTKFFTLFGLPKSIQSDQGSNFMSGLFQQVMQELGIKQFRSSAYHPESQGALERFHQTLKNMIRMYCQDTEKSWDEGIHLLLFAARDSVQESLGFTPFELVFGHTVRGPLKLLKEKLLVDDDSSLNLLEYVSNFRTKLTKACDLARENLKSAQKCMKEKYDKTTVTQSFQPGDKVLAFLPVPGTPLHARYFGPNLVEKKENDLNYVIVTPDRRKNKQLCHVNMLKSYYERKNGVQVVNVIDVANNNIEDTTELFDLSESTKLHNSDVLRDMDTKLSHLSESQRRDIEVLVQEYQCLFPDVPSRTDHIAHDVEINDAPPIKQHPYRLNPTKQKHLEAEIDQSSWSSPCLLVPKPDGSYRMCTDYRKLNNMTKADTYPIPRIDDCIDKTGTAKYVSKFDLLKGFWQIPLTKRAKEVSAFVTPKGLYQYKVMPFGMRNSPATFQRLRNNVIAEIEGCEGYIDDVIIYSDTWEEHLKIMRKFFTRLSDAKLTINLLKSEFGCGHVTYLGHIVGQGQVKPVEAKVEAISMFPQPASKKHVMRFLGMAGYYRKFCPNFSAITEPLTRLLQKNAKFHWTEQCQFAFEQLKAMLQRAPVLSAPDFSRPFKLAVDASDIAAGAILLQEDDDGIDHPVAYFSRKFNHHQRNYSTVEKECLALILALQHFDVYVSSAGVPIEVFSDHNPLVFIHRMKDKNQRLLRWSLILSEYNMHIQHIKGQDNLIADCLSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLS4</accession>
    <name>A0A6S7JLS4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000417</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019299">
        <property type="protein sequence ID" value="CAB4033496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLS4"/>
    <dbReference type="OrthoDB" id="5954387at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="442" mass="50898" checksum="37417CFE7C47DAFB" modified="2020-12-02" version="1">MPSENIDHHWNCWKEWFLTHVKNSIPMKVVTDTNSPPWIDGEVRHLLRKKYAALKRFRQSRTNARKQKLRTLSQSVKYLVRQKHRDYLEKVKDSFAENPKLFWRYHKSVRRHRVNNRPEIVFNGETAKTAAHKAELFNTYFSSVFTSPRSSTNLEAVTRSPPLRTELQLSDIVISVDEVTDCLKSLDTSKASGPDVFHTIGKNLDKNTQTDIVYLDFAKAFDSVDHSILLQKLKCYGVTGNLLGWFADYLNNRRQRVVVDGVASRWAPVTSGVPQGSILGPVLFVIFINDIPEVTDGTSPALFADDTKVYKDVRSVTDCEKLQQTLDKLDIWTQDNITFNASKCKVLSVTRKKDPIIYPYHLGRNDLSRVENKKENEIVSKANKQLGVLKRTCLSLTNVNIRRSLYLPLVKSQVSYATQVWSSNHHSQLNRRIERVQRRATK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLW3</accession>
    <name>A0A6S7JLW3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004438</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019281">
        <property type="protein sequence ID" value="CAB4033485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLW3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="383"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="387"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="494" mass="55845" checksum="7173344E1A338276" modified="2020-12-02" version="1">MSSSSKLQKFLVKRKDTGKVSRIEIEEDKQIFDLLELSRVSLKFDEDAMLCMYRDGEEKILTEAAYIREIVDPKVILMVKDKRIEEKEKEKCKEKKEATDKENMVNATKLKESITEKLDKRDSVNNSHDVFRKQFAQHAPSSSPAEHNLLDNMKQQIRSEGTTKELPIDASEDEEIRILTRKINSEGLEGFVYEIVPESYTDHNESSYYERSFSSEEERRFTQSKVNSTTNWSSWQTEAGFSGWGVSVSASAGHNTSTSEQEGRKTQSTEKTCIAVVTKTSFHQMKKFKVNVKLSERAIKDAKDIMYAPMLKKQQTIAKFINNYCSFVYSGQFTAGGWFRTVATARSNEAVEFAALEKEATERVEKYWSAGCSGYGVTAGGGRNWGSSNQTSSQQSQQNTKSSVQVLIRKESAPGNTSNENDLEMKIKEVKNCTIFPVVSAKKSHFIPIYEIVKSQAEAIGDKELANVSHILRLYMKGEAVGSTFYSHNAPFIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQP2</accession>
    <name>A0A6S7JQP2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pro-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040561</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018393">
        <property type="protein sequence ID" value="CAB4032424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQP2"/>
    <dbReference type="OrthoDB" id="5953917at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF4">
        <property type="entry name" value="PEPTIDASE S1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13975">
        <property type="entry name" value="gag-asp_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="186"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="193"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="913" mass="104795" checksum="203234414E3AA6FD" modified="2020-12-02" version="1">MEKLEVRRIQREEEWLLRKLEIEKEAKKQLQENTSQATATQSVKLQKYTITPFTGDFKDWTRFWNQFSVEVDGSSISEISKFNYLLELTKGKPREDILGWPHTSDSYIEAKRILLETYGKDIKVHKAIIQEIESLQSITDIHKTTSIHEFYNKLSRAVRTLTTMKKLDSEQSTVYTVMDKLRPKSTVEKEQSKLSTENTVRQSFEKNMSSSSNSTTLHPTVKAKVNDRVVRVMIDTGASTSYVCSDIITKLSLKPVRRERKCIEQLYGTVTKNVEIYRIHIQSMVVDDFELDIDCINAGKEVLTYLPNPKVKDLKKSSRPLQKLQLCDEETTDRQIPVHIILGAADYQRIRSAEQPILGENPDTDPGAEFTMLGWALYGKIVSMESSEKRLFLNSQSEFEKLCSVDVLGLAEKLEINTEFHEDFIEHLHQTEKGVYRSNLPWRPDHPTLPVNRVLAVARLRSTTRRLEKLGKLDEYHSVMEEQLREGILEPVPPKQTGEVWHSNVEELESISNETAKGDQDSNTKSYSESTTKILGVPWEKKTDVVRVSLEACQLTVSPLTKRKILAAINGVYDLLGWASPVMITGKILFSELCLRKVSWDQQVPDDIVRRWNQWAKTLRECTEIKVPRSVVNNKSQQISIHGFADASQLAVCAAVYVLATYNDGKTSQNLLVSKSRVAPKKVSIPRLELVAAHTLAKLLSRVNRALSSLDILKENQLWSDSSTVLYWLENRGTWSNYARNRVKAIHDLGNFTWHYVPTDQNPSDLGTRGVAPRKLGEFWLKGPAWLTDRSLWPEQPENTETKEASCETLPVKKEKVLLEKERGAKNERKEWVENILRKHKYWKLLRVTAYLLRFVNNCRKKEQRKGPLTTDEITAAENRWMKIAQEDEEVNCPFPLKKDDVGLWRCHGGVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTC1</accession>
    <name>A0A6S7JTC1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085292</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020467">
        <property type="protein sequence ID" value="CAB4034837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTC1"/>
    <dbReference type="OrthoDB" id="5990438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF435">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="22358" checksum="CE80B79776485CA8" modified="2020-12-02" version="1" fragment="single">LRTCRRQLVRSVTPLEVKLSDEGTEYQEDSPADKSKTIASCKSNSNGPKESKVSEVDLSDLTTEQQRQAREILCREADAFAQDDVDIGCINLQMKINLTDHEAVQKNYLSIPRPLYPEVKAYIEDLLNRNFMGKSRSPYSSSVGCVRKKDGGMRLCVEYRSLSKKTVPDRHPIPRIQETLDNLGGNCTIPLVYLLDCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JXL7</accession>
    <name>A0A6S7JXL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014401</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023366">
        <property type="protein sequence ID" value="CAB4037685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JXL7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="11869" checksum="DED6404EDAD9652A" modified="2020-12-02" version="1">MPRPDNLEQLGNSIPSHPTTSRASAPVCSTPPTTFTPAPNIIPNPNFDPKKAFSLGPSHTPSPPMCVSRILSDKFIELTKLIPENLDELLSDTTSFAIEEQKKVKLGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0T8</accession>
    <name>A0A6S7K0T8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Krueppel-like factor 11 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A026145</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022679">
        <property type="protein sequence ID" value="CAB4037048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0T8"/>
    <dbReference type="OrthoDB" id="6365676at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000018">
        <property type="entry name" value="Krueppel-like factor 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000926">
        <property type="entry name" value="Kruppel like factor 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000125">
        <property type="entry name" value="Putative zinc finger protein 143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23235:SF164">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23235">
        <property type="entry name" value="KRUEPPEL-LIKE TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043972064" evidence="8">
        <location>
            <begin position="21"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="25"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4037048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="380" mass="42025" checksum="99FDD2D3C91D0F34" modified="2020-12-02" version="1">MIRVIFARLVKFCIFRRLSSLTMDALPLSPPSTPTPSNRDSENETVTEQEESKVQAKTDRDITAVQSLLAMSQWSPPSPEHSILATNDPLFSLLDPIHPNNIQLSPDKVDISTPLLSQNVMTNPVGVFGLPTQSLVDFSKLLAGNRLTLPNTGNQGPIMIICPIAVPTSSASTATPTISTNIGERNIAPTFAENSPQKAPTESNANRKRNYVCTYENCEKTYFKSSHLKAHLRTHTGEKPFVCNWESCDRKFARSDELTRHRRTHTGEKKFECPLCRRRFMRSDHLTKHARRHLTAKKLPGWQVEMNKLNQVAAASMQLPSNLPRNDDCTLQPILPPVCPPMFSIPSPTSSLDNIMMNSSELGGLSPSSSVPLSTLSATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K6T3</accession>
    <name>A0A6S7K6T3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Doublecortin domain-containing 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043024</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027764">
        <property type="protein sequence ID" value="CAB4041105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K6T3"/>
    <dbReference type="OrthoDB" id="9999986at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030496">
        <property type="term" value="C:midbody"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902412">
        <property type="term" value="P:regulation of mitotic cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043188">
        <property type="entry name" value="DCDC1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46302">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46302:SF3">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15636" checksum="073D19DA81C1F1F0" modified="2020-12-02" version="1" fragment="single">NTTDPNRIWKFTPTGDICSESNPSLVLTWIANENHQVLEDEDKQRALFGVIENNATEENKEAIVESLSSMKDVYGGEKYSVAVLPKLPAKHPAIGTQRWAIKQESLSNIGQWKFSQITNPAWNRKALSWPVNQDGTLNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K8U0</accession>
    <name>A0A6S7K8U0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A011657</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the protein kinase superfamily. ADCK protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009377">
        <property type="protein sequence ID" value="CAB4017048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K8U0"/>
    <dbReference type="OrthoDB" id="201153at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13970">
        <property type="entry name" value="ABC1_ADCK3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004147">
        <property type="entry name" value="ABC1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034646">
        <property type="entry name" value="ADCK3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051409">
        <property type="entry name" value="Atypical_kinase_ADCK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43851">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43851:SF3">
        <property type="entry name" value="COENZYME Q8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03109">
        <property type="entry name" value="ABC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4017048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="383" mass="43891" checksum="D1995CC6568B3028" modified="2020-12-02" version="1">MILYIDKFKFIYQLTDNTMISPTLQRIFERVRDGADFMPSWQLEKVLNSELGSKWKTELVDFDMKPFAAASIGQVHQGILKDGKKVAIKIQYPGVDTSINSDIDNIVALLKLGNVLPPGLHMEQFIDVSRRELAWEVDYIREAKCAKRFSDCPSFRELLQNDNSFYVPEVIDSLSTKRVLTTEFVYGSSLDKNTKWDKKITNKICLDILRLCLRELFEFKFMQTDPNWSNFLYNPDSKQICLLDFGASREYPKKFVDTYIKIIHAASIGDRKTVVECSKILGFLTGYESKVMITAHADAVMILGEPFGSLADFDFGTQDTTARIQSLIPIMLRHRLTPPPEESYSLHRKMSGAFLLCSRLSAIIPCKELFDDIWANYKFTSVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9Z0</accession>
    <name>A0A6S7K9Z0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC107344993</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042416</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009482">
        <property type="protein sequence ID" value="CAB4017298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9Z0"/>
    <dbReference type="OrthoDB" id="5986609at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF6">
        <property type="entry name" value="DOUBLECORTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="255" mass="29322" checksum="38AD44C5759E960E" modified="2020-12-02" version="1">MVAQHHHHAKASVGNETTVILERKRAQLLIVRNLHIEAFEEEFDSLEKKTDCQKTSPLLKLYYPIIDSDGLLRIGGRLKRADLPYEERHPLILHGKHHVTSLIVKNCHEEAKHQDRHFTHGMVRSKGFWIVGGKRLVNRVIHPCLKFTARRTRRGHAYSKRWAVIFTCLSTRAIHIELIESMDASSFINALRRFMAIRGPVQQIRSDCGTNFKGAQNELESALKETDQKIVETYLNSPECEWIFNSPHASHRGGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KDB4</accession>
    <name>A0A6S7KDB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039878</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032284">
        <property type="protein sequence ID" value="CAB4043405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KDB4"/>
    <dbReference type="OrthoDB" id="5989491at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="28089" checksum="180364EEF8E6BF26" modified="2020-12-02" version="1" fragment="single">MADSNVNSSQISDSSQLEENEESRNSLRAIQLLQEATRLLSPQPNSLSSTTVNQVSETSNSPAPWPLSNSSPAPSNSSPAPGARHGDIVGNLRSLFSPYGTERFRSQSSAYQIAPKRTRRNGSSNSNYYKVKETWTHEFFCLAKCNQNRVPQRSEKNMLQQCGLGRKKICFNSNSNPAKLNEMLLSHFPKLANGGGFEILRSGGAKATDLVIIHPPPIGYSVPFLRDLSGLGQALAYVRPLQRNLDLTIQAIQPSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIV6</accession>
    <name>A0A6S7KIV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A089403</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033857">
        <property type="protein sequence ID" value="CAB4044038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIV6"/>
    <dbReference type="OrthoDB" id="1927454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052845">
        <property type="entry name" value="Axonemal_dynein_LC_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23052">
        <property type="entry name" value="AXONEMAL DYNEIN LIGHT CHAIN DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23052:SF1">
        <property type="entry name" value="AXONEMAL DYNEIN LIGHT CHAIN DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21031" checksum="B608A1F3627622CD" modified="2020-12-02" version="1" fragment="single">MYLTIRNIPSYHPRCNKLHSVVNGNEELLDPEWIRLADQVGNEWLENMKEIAILIGSSLKDGERQDEELKRNTVDFDQLCKAGKLWLTNMTNSVENEDGKFMLIVSDLHSTMLRWMITVLLRLAPDVEDCDLEEIGDQNPGGSFSRGLENIFKGDYDGDYDGGDDDGGGDGGDDDDGDDDGGDDVNGDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJH8</accession>
    <name>A0A6S7KJH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase PDZRN3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A037786</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037954">
        <property type="protein sequence ID" value="CAB4045167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJH8"/>
    <dbReference type="OrthoDB" id="5979347at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027370">
        <property type="entry name" value="Znf-RING_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13445">
        <property type="entry name" value="zf-RING_UBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="224"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="148"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4045167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="270" mass="30902" checksum="68809B21AA33E9B3" modified="2020-12-02" version="1" fragment="single">MAAHGYEDERFESPVSGRFHCSICLNVFNDPVMCRQNQHIFCRGCISKHLENYRTCPQCKDQLSLDQLCVVPRILTDYLDELRIRCEFVQRGCEEFVQLQYLKKHVEECRYAPVSCSNEGCQREVNRRDLTHHEFVECEERQLKCHHCERLSKDVDILKEKVTGMEEKFDTACANVYAAVEVKLDSFQKNFKEQQKNIDDSLSSLKRSNSSIKGNLKKLIKVMESLPKKSRVETDNDDSASDSSSSGPDSSSSTSTPSRATSVNIVPRAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KKV4</accession>
    <name>A0A6S7KKV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064947</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032499">
        <property type="protein sequence ID" value="CAB4043484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KKV4"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16315" checksum="A41509DAFBF0C48E" modified="2020-12-02" version="1" fragment="single">ELSKLKTNKATGQDGISVKLLKDTVCAFAPTLTKIFNLSLRCGSFPDIGKKGKVTSICKSGDPTSPNNYRPITILPTLRKLLERIVHRQIYNYLQEHKLLASEQFGFRSKLSTTVALAHFTEQVLVNLDNKKITGAVSIDLRKALDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KNS1</accession>
    <name>A0A6S7KNS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A078174</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032805">
        <property type="protein sequence ID" value="CAB4043641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KNS1"/>
    <dbReference type="OrthoDB" id="514777at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11928" checksum="E617044D35DFE374" modified="2020-12-02" version="1" fragment="single">MGAVDLLFLQCLKDLKQLKGEVLYVFLLHQNVEEGKAHVTSVAHFILTQPLLSFVISEAKMFKASVRDSMDQNGDREGHEQDDGGHEDGEEDKIPTIRIKLHCINP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L318</accession>
    <name>A0A6S7L318_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014446">
        <property type="protein sequence ID" value="CAB4026849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L318"/>
    <dbReference type="OrthoDB" id="5985125at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="319" mass="35390" checksum="356D4363E79E93B6" modified="2020-12-02" version="1">MGDKLSNDIPQSNVTPESYLSDVQNSVNQLTCFREITEPEILGLLQGLVASKASGIDGISAKILKIAAPSITPSIVSIFNQSIATGIFPSDWKVARVAPIHKTGAKHDMENYRPISVISIIAKIMKKLIHNQLYDYLIASNLLTNSQHGFRPCHSTTTALLDITNRWYQNMDVGQLNGVVFLDLKKAFDTVDHNILPKKLKIDGIKGMALCWLRSYLSDRIQYCQINGHLSDPLTVKTGIPQGSGLGPLLFLIYINDFPKCLRHTRPDMFADDTQIATSNSDINVILENLNTDLINVSTWMSANKLTLNNKKNGVHGYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L5E2</accession>
    <name>A0A6S7L5E2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sideroflexin-2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A072906</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the sideroflexin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020308">
        <property type="protein sequence ID" value="CAB4034663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L5E2"/>
    <dbReference type="OrthoDB" id="6608471at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015075">
        <property type="term" value="F:monoatomic ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140300">
        <property type="term" value="P:serine import into mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004686">
        <property type="entry name" value="Mtc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11153">
        <property type="entry name" value="SIDEROFLEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11153:SF14">
        <property type="entry name" value="SIDEROFLEXIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03820">
        <property type="entry name" value="SFXNs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4034663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="88" mass="10027" checksum="E9094B145D45F55C" modified="2020-12-02" version="1">MAAPGMLIIPIIMEKLEKYRWMQRIKVLHMPIQVLLCGVGLTFMVPAACSIFPQKCSMKVEHLEPQLRDKIRASQGPDVQTVYFNKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LG85</accession>
    <name>A0A6S7LG85_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Probable G- coupled receptor No18</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A079870</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022641">
        <property type="protein sequence ID" value="CAB4037013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LG85"/>
    <dbReference type="OrthoDB" id="5975708at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030425">
        <property type="term" value="C:dendrite"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045202">
        <property type="term" value="C:synapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004993">
        <property type="term" value="F:G protein-coupled serotonin receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030594">
        <property type="term" value="F:neurotransmitter receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007268">
        <property type="term" value="P:chemical synaptic transmission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007187">
        <property type="term" value="P:G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24247">
        <property type="entry name" value="5-HYDROXYTRYPTAMINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24247:SF202">
        <property type="entry name" value="5-HYDROXYTRYPTAMINE RECEPTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4037013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13894" checksum="FF15A6EF00EB3FD7" modified="2020-12-02" version="1" fragment="single">MTESAFVILVEVLLVIILVIVVLGNLFVIEAVCRHIRLRTIPNICITSLAIADLFVGLLNIPMYMYAVYDDAFEQKYLEKLNLVLNSLDMYFGVASILHLALISMERCYAITCPLRRRSLQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LQ31</accession>
    <name>A0A6S7LQ31_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A021429</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020022987">
        <property type="protein sequence ID" value="CAB4037359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LQ31"/>
    <dbReference type="OrthoDB" id="7470624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF6">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="15"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4037359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="44562" checksum="6475D04326154081" modified="2020-12-02" version="1">MQKLAYDIVKSHFHDTSSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVTATTGKAAYNIRGVTVHSLLKLPIGSRGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGSNDKVFGGKSLILTGDPGQLPPVADKPRYHAKPSNAVGEQGHQAYHKFDKVVKLTVNQREQDMTSEQVQFRDLLLRLRKGDSTVDDWKLLLTRQPSNVTNLCDFEDSTRLFYSNEQVANYNHEQLTKLEHPIAHINARHSSAFAKKISSDDMSGLEPVVFLAKGARTEIGFHVRQQLPLRLAWALTIHKSQGLKLPKAWIDIGKSERTAGVSYDAISSNSRVKSLASCVIEPMTYERLTSLKSSANLQYRLEEENRLDQLAQTTSSAVTIEFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRJ0</accession>
    <name>A0A6S7LRJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A069566</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025576">
        <property type="protein sequence ID" value="CAB4039569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRJ0"/>
    <dbReference type="OrthoDB" id="295078at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.750:FF:000003">
        <property type="entry name" value="GTPase activating protein (Evi5)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.270">
        <property type="entry name" value="putative rabgap domain of human tbc1 domain family member 14 like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.750">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000195">
        <property type="entry name" value="Rab-GAP-TBC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035969">
        <property type="entry name" value="Rab-GAP_TBC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050302">
        <property type="entry name" value="Rab_GAP_TBC_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47219">
        <property type="entry name" value="RAB GTPASE-ACTIVATING PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47219:SF22">
        <property type="entry name" value="RAB-GAP TBC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00566">
        <property type="entry name" value="RabGAP-TBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47923">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50086">
        <property type="entry name" value="TBC_RABGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0343">GTPase activation</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="45"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4039569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21903" checksum="B5FB69CDF4B75B7B" modified="2020-12-02" version="1" fragment="single">MEDNGEILSASHEDGLQARSNSFNELLYRLEQQNRRLENDDKAMLELSPGKNNNNNDTKLPSESAESTDSDISSVDGLADGLDTADDFDYASFQVWGEIIRDWEENMKRRPKFIRDLTHKGIPEKMRCIMWQYFTGAWESSLVGKYADLIQQQSACERVIKRDIARTFPEHPYFQQEDGQGQQGLYNVIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSB4</accession>
    <name>A0A6S7LSB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A086270</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HARBI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027413">
        <property type="protein sequence ID" value="CAB4040889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSB4"/>
    <dbReference type="OrthoDB" id="5987879at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045249">
        <property type="entry name" value="HARBI1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22930:SF269">
        <property type="entry name" value="NUCLEASE HARBI1-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4040889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19082" checksum="A0F34866B2FEFF8E" modified="2020-12-02" version="1" fragment="single">CFTLVDANYKFLYVDVGATGRAGDAGVFLDSSLKKALYTKTLRLEAPQNIEGITTKICYHIVGDDAFPLRKDIMKPYPHRSLDKPKKIFNYTLSRARRVGENAFGILANRFRVFLTTIKLHPDKVVDIILAACCLHNFLVEQNKNNYISVQDVEDVEHLNFMNGQWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9F2</accession>
    <name>A0A7D9D9F2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000288">
        <property type="protein sequence ID" value="CAB3980400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9F2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10068">
        <property type="entry name" value="BONE MARROW PROTEOGLYCAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10068:SF14">
        <property type="entry name" value="CELL WALL ADHESIN EAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="202"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="324" mass="33871" checksum="AEA74A967BDDF6A2" modified="2020-12-02" version="1" fragment="single">IPWISDPLDPSDPLDPSDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPPDPLDPSDPLDPSDPLDPSDPLDPSDPSDPSDPSDPLDPSDPLDPLDPSDPLDPSDPSDPLDPSDPLDPSDPSDPLDPSDPSDPSDPSDPSDPLDPSDPSDPLDPSDPSDPSDPFFFYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D9K5</accession>
    <name>A0A7D9D9K5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A027027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000294">
        <property type="protein sequence ID" value="CAB3980478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D9K5"/>
    <dbReference type="OrthoDB" id="6118683at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="436"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="455"/>
            <end position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="53940" checksum="717076CEE4FF7D0C" modified="2020-12-02" version="1">MIRDCIVFGVSDIRLKEQLLRESSELTLEKAASLCRAAEESVKQLKELWKQNVDPSEPEVHVVKKPTRGESLFDCNRCGTKHAVRSCPAFGKPCHKCKRKNHFARMCQMSRNSSVDEVSENTGEANTRNDPTLELNSLFIGTITSPTTSSAWFVSVGINGTQVRFKLDTGAEANVLPFNVYSSLEISTSLQKTDVVLTSYGNFKVKPEGRVFLRCVVNEVFEGLGSMDGEYHIVVDKTVKPVIHPPRKVNSLVMVEKCDASLRLCLDPCDLNKAIQREHHRIPTAEDIATRLSGKKLFSIVDEKDGFWQIHLDEESSHLCTFNTPFGRFRFTSLPFGVCSAPEVFQKKNEALFGDIDGVKVIFDDIIVAARDEKEHDEIMAKLSERAKAENVKFNPEKLQYKVKEVKYMGNIVSESGLKPDSEKVRAILDMPLPKSKQELRSITDPLDDGQKEDGQEEEDELLSIDVDNIDAEEGFNDSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DDK9</accession>
    <name>A0A7D9DDK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082741</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000579">
        <property type="protein sequence ID" value="CAB3983125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DDK9"/>
    <dbReference type="OrthoDB" id="6598476at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="91"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="19466" checksum="4B0F1468D94B2CD3" modified="2020-12-02" version="1">MEKSKELSGAQKRKQRKILWEKRESENSKIRKITSLFDRVSTSATASNEANTKGQMDTGDNDIGLVVSETEIESQECTECSSGSIRNFKSVKLSETAESPDSDDHIGHTMSKSLDESELSTNIPVADLRKCSELEDFDPCATCPSDRGDNDMGLVISETEIESQECTECSSGSIRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DDV6</accession>
    <name>A0A7D9DDV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Zinc finger 883-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A020838</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000528">
        <property type="protein sequence ID" value="CAB3982651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DDV6"/>
    <dbReference type="OrthoDB" id="6077919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000012">
        <property type="entry name" value="RB-associated KRAB zinc finger protein-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000303">
        <property type="entry name" value="Zinc finger protein 41"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24393:SF34">
        <property type="entry name" value="PR_SET DOMAIN 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24393">
        <property type="entry name" value="ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="181"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="187"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3982651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="238" mass="28416" checksum="8BCDA421BEF4B4D7" modified="2020-12-02" version="1">MADLENDEVNRQLCAITTDEMFECWSPETQEQILAEWDDWQEESEKSGLCCDECGKTFKRAGNLKRHKKTHSEKEYECSRCHKKFDRMDNLKRHLKTHSENEYECSRCDKKFDQMDNLNRHMKTHSEKEYECSKCHKKFDRKDNLTRHMEMHERRGAEREYTCDECGEVFRNIFPFQAHQREVHQVGRGKRTKTPTGRTKRQRTDEPKPPRPSTSVNEGASTSIVVSECMKFICLYRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEY8</accession>
    <name>A0A7D9DEY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Bromo adjacent homology domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A059003</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000702">
        <property type="protein sequence ID" value="CAB3984157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DEY8"/>
    <dbReference type="OrthoDB" id="1922186at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005677">
        <property type="term" value="C:chromatin silencing complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000976">
        <property type="term" value="F:transcription cis-regulatory region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031507">
        <property type="term" value="P:heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053032">
        <property type="entry name" value="BAH_domain-containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043151">
        <property type="entry name" value="BAH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46576">
        <property type="entry name" value="BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46576:SF1">
        <property type="entry name" value="BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13215" checksum="9640F7EE9A1440E0" modified="2020-12-02" version="1" fragment="single">NEILASRHKDDNSVACIVDKCYVLSYPEYCRHRAATKRSQDSRISSATPVPPVEATHTTREHIPSTCDPKLLFFCRQIYDYRMDICFLKPVAKPGTLFREPCFLKEFCFRINVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DHN6</accession>
    <name>A0A7D9DHN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041831</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000795">
        <property type="protein sequence ID" value="CAB3984869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DHN6"/>
    <dbReference type="OrthoDB" id="5977719at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40743">
        <property type="entry name" value="NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40743:SF1">
        <property type="entry name" value="POSSIBLE GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="27417" checksum="288080C91CEF3BED" modified="2020-12-02" version="1">MTEKPWNENQTERNKTRLMQRQEEVEETLQRNLDHPLVTAVHLLVNQPSAEQRLHELNLHNKHKIFLHHVKASPRYRDFFDYANDRLKNQVVIMMNMDIYIGEGFEKLNKTFLVTQNVSYVLTRSGRPEQRCNMGGKRGYCGTGYIGSHDAYIFVLTQRLKESILSELDYEMNVYGAENRLLWVLKNQMKKKLLNPCKYLKTYHNHCINIHGSVRPRIDEKGKSGWVPPSGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DRN5</accession>
    <name>A0A7D9DRN5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A031293</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001898">
        <property type="protein sequence ID" value="CAB3991670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DRN5"/>
    <dbReference type="OrthoDB" id="5985458at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="125"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="342"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3991670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="519" mass="58626" checksum="125A7165AA30ECE6" modified="2020-12-02" version="1">MSIATPCSPVLMGRDWLHKLRLNWKTIKLSKSSDPSHRNPGTTTQEKLKNLLDTHAEVFEDKLGTFKSAKARITLKEGSQPQFRKARQVPYSLRPKVEEEVKRLQSEGILSKVEWSDWATPIVPVPKQDGSVRICGDFKGTINPTLQAEQYPLPRIEDIFAHVAGGKTFSKIDLRQAYHQIELEEESKKYLTINTSVGLFQYNRLVLGITSAPAIWQRTMDQILEGTSGFSCILDDMIVTGKSNDLEEDLRRLHHHGLRANKSKCEFFKEKITFCGHDINSEGLHKITDQTAVMVNAPRPQSVAEVRSFLGLVNYYHKFLPNLATILHPLNQTLESNYKWNWTDQCEEAFCKVKAMIVSDLVLTHYDPNLPLQLACDASPVGIGAVLSHVMADGTERAISFASRSRSKAERNYAQIDKEALATVWGVKKFHNYLFRRNFTLLTDQEPLTSIFHPSKSLPAVTAARLQRYALLLAGFDYTIRYKNTKLHENADGLSRLPLNSETTEEEPDPSGPLLCHGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DUS4</accession>
    <name>A0A7D9DUS4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease 8-like 3, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002556">
        <property type="protein sequence ID" value="CAB3994868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DUS4"/>
    <dbReference type="OrthoDB" id="430051at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010666">
        <property type="entry name" value="Znf_GRF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06839">
        <property type="entry name" value="Zn_ribbon_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51999">
        <property type="entry name" value="ZF_GRF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="200" mass="23501" checksum="0B771F9A93CA8E0F" modified="2020-12-02" version="1">MECFHGKPAACSTTARGTFWFCGETPSCEFFCHDEDCYLFTRAMEACQNSGSNHPICPTHQRLAKLRVVKDKMKENYGRPFFTCSDRHDPCNFWQWGDIYESPRPRCKHGMVCTVRKVKKEGPTQNRLFYCCPQIDSCGFFEWKEIEPRVAKTGFVLFSDPLEYRYKNEDTEKHSLVLTLMLRKRMKNSLRNMNNCNKTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DY03</accession>
    <name>A0A7D9DY03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Interferon-inducible GTPase 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A070255</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class dynamin-like GTPase superfamily. IRG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002653">
        <property type="protein sequence ID" value="CAB3995383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DY03"/>
    <dbReference type="OrthoDB" id="422720at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000541">
        <property type="entry name" value="Immunity related GTPase M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030385">
        <property type="entry name" value="G_IRG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007743">
        <property type="entry name" value="Immunity-related_GTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051515">
        <property type="entry name" value="IRG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32341">
        <property type="entry name" value="INTERFERON-INDUCIBLE GTPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32341:SF10">
        <property type="entry name" value="INTERFERON-INDUCIBLE GTPASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05049">
        <property type="entry name" value="IIGP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51716">
        <property type="entry name" value="G_IRG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3995383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="32385" checksum="F37113AA9285CF65" modified="2020-12-02" version="1">MFAGDTQIATSSDDIKVITETLNRDLNNVANWLSANKLTLNSSKTEYMIIGSKKRLSQVTADPAISVGNLEIKRVEMTRSLGLMIDELADDDKNAAKTGVTETTMVPTFFVHPTNKNIRFWDLPGIGTTNFPDFPTFCEKVHIQNYDTFLIICAGRFTVNDLMLAKKVKSMSKSFFFIRTKIDQSIAGEQKKRNFDEDKVLKAIRDDCAKQLEGLNKGKIFLVSSWDRALWDFGRLEKAILDQLPSKQKESLAFSLRSKSRDVLKETIKILKGMCDKFFEFMAHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E5B4</accession>
    <name>A0A7D9E5B4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069437</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004104">
        <property type="protein sequence ID" value="CAB4001506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E5B4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="40256" checksum="4F293E4B4DE43D42" modified="2020-12-02" version="1">MTAEVYNAVLLTAGAVGISMASKKLLKEPLGTPENVKGMNGYAEEAHRHNLAMENLTAEREKYLEEVNDRRNRIAELKSELAEANKDINSTNKSLELVRRINELTHKAMPRRPQLSNHYKPSSEMEEYMAIFGLITGGVYRGMEWLEMVTPDEMARVGRKANTLEELEATVRKYVESRIKTKHTYDPVCSECGSKSIVIIDGADVCTQCGTSDRNGFTYYVSYNHNKDDYLKKKSCHNRVRWFERHLLEHVASGDRDTIREQFRSIVRCIQRLRLQRGRNIVRYKFYLLRIASMNNITLRNPPEDIKTKRIVDILENRLYGRVFPELGWKPINCKYYNNWKLNNKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9N1</accession>
    <name>A0A7D9E9N1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043445</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004799">
        <property type="protein sequence ID" value="CAB4004066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9N1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="60" mass="6419" checksum="976FB379BDD9E6D4" modified="2020-12-02" version="1">MAGISAVLQFDSGLKTQHSMMTLAKIPPNEYTVQAGITKDKLRLRGAARKGSGATEKEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EFD6</accession>
    <name>A0A7D9EFD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005624">
        <property type="protein sequence ID" value="CAB4006852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EFD6"/>
    <dbReference type="OrthoDB" id="5963582at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25913" checksum="79D374C5F47CC7BA" modified="2020-12-02" version="1">MAERLEFDIFTGKFRVRRDSHNQENSMFVTNMARDGFGAHFVTPHEKDKLEIHPTSYYEEKVLVETIHISCQSDTYKPGCNYGGVIIYQYDSKSEWRTANNTHCKSGYIVIQDTDSENVKKWMSKEPGVVHGAVYRNAFGESVKKANVVGEGFAIRKGKFAMCSGVFNNPQGSAFHDDRREMHELSEHCVRKVVEHWKTAGTLSASWFGRQRNFEVRKLLKDFKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EFI6</accession>
    <name>A0A7D9EFI6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010702</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006369">
        <property type="protein sequence ID" value="CAB4009188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EFI6"/>
    <dbReference type="OrthoDB" id="410381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="20237" checksum="368C002CB97461E8" modified="2020-12-02" version="1">MVNYKTYRNRCVSLIRDAKTTYYKTCVEDHKGDSKKLWQYLSDIITTNLKTAPSSLRNNSDNSTILDPEDMCEHFNNFFSTIVNQYVAVQQFSSNFDKLSEMVNSRINSDDAFSIPQLTEEEICSYLRNLDTHKATGLDGLSHKILKMSTYLIVPSLTKIFNKSLSSGMFPTKWKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ER28</accession>
    <name>A0A7D9ER28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">AGAP009518</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056060</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008018">
        <property type="protein sequence ID" value="CAB4013779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ER28"/>
    <dbReference type="OrthoDB" id="9448246at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="94" mass="10580" checksum="7C77129506AF0E8B" modified="2020-12-02" version="1">MNEYTGGPRILTKISSGDIKAKEGDLVNLLCSAQGEPPITFSWKKDQKPLESFTETAKKPYRSSLLVVTVKDQTSFGEYICHIRDRFQSTTHTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZK2</accession>
    <name>A0A7D9EZK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LIM domain and actin-binding 1 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A042375</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010294">
        <property type="protein sequence ID" value="CAB4019089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZK2"/>
    <dbReference type="OrthoDB" id="20799at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.110.10">
        <property type="entry name" value="Cysteine Rich Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001781">
        <property type="entry name" value="Znf_LIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00412">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00132">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50023">
        <property type="entry name" value="LIM_DOMAIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0440">LIM domain</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="4">
        <location>
            <begin position="35"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="70"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4019089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="35512" checksum="4DDE3C5305D844BF" modified="2020-12-02" version="1">MEANEIPGNLANQPPKPRRLPEVPMDQEPYDVTKAPRKPPRQRSRGQRCSTPDLQRRRSGSSSLHKRSRSLSESRSSTESRRLSVGFGDSGDNPLITQNGNLKHKNVSVDSQASLTTSVNKATPRKEPFSLPAYCGEDAIFNRRCTTCHQRIFPEGEHYLIAQSLLFHVTCFRCSICTTCCDVTDYCYVTEHEKFYCLRHYHEMVAAGIGIGDEGRVVNGTGPGAFAAVVGSRRKRKEIVKTLIELQNRRTKLAQIAFQLEEAMKMAKSEEEPFLWKHWFDVTYEKIMIARAVTELAYHGDGDVGGDDDGGGDGGGDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HEU7</accession>
    <name>A0A7D9HEU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A067442</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000333">
        <property type="protein sequence ID" value="CAB3980887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HEU7"/>
    <dbReference type="OrthoDB" id="6147468at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.210.20">
        <property type="entry name" value="THAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038441">
        <property type="entry name" value="THAP_Znf_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00692">
        <property type="entry name" value="DM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="154"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="237"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="289"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="160"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="298"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3980887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="537" mass="60549" checksum="177C3BC59A82D767" modified="2020-12-02" version="1">MNNIRDFKIGKAELLRPVYNVCILVRKKWTPSKLVHSSKTRNRRKIWIEFCKRKAFKPTANTKICSLHFDDDAYDPAHSPKFLKSIGCEDQTLVLLRKDAVPTLNKPLMETAETKQRKTTEERPRRKCVNDLVKDYEKPDCAACSLSSELEHFTDETDVESSNTPEDNNRPNTAEKSTNTVIIWNRSRKTQTEKTETRTFPTQTHLQVNTNCSLFEKSASLKYDKEVQTEGEVVSFQAQSDDEQTTAMPIPTEIPPPDDDIQGSQSEKNDCITTSDTILDEFVKNSSDEDFTSLTESSDSEGEANSESEDDLEQENTSINYRLSKDKPASKQIKIVIFEEAIINAFRNCLKCGEACTVSLERQIGSTCNIHVSCSNTTSHNFTWSTGILSTGLESAKVIRMFDALKIINIKKRGLSNILKSYVIPAVFHVWDREQKSNLANIKDDGKKVSIASDMRVDSLGHCGLLGSGSTLDLERKIVLDTQVIKSTEVKNSNAMELESLKRQISFLEKNDVEIGKLVTDRHMQVSALHGERKSSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HJE7</accession>
    <name>A0A7D9HJE7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Acetyltransferase component of pyruvate dehydrogenase complex</fullName>
            <ecNumber evidence="6">2.3.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A020861</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>N(6)-[(R)-dihydrolipoyl]-L-lysyl-[protein] + acetyl-CoA = N(6)-[(R)-S(8)-acetyldihydrolipoyl]-L-lysyl-[protein] + CoA</text>
            <dbReference type="Rhea" id="RHEA:17017"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:10478"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83111"/>
            <dbReference type="EC" id="2.3.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
        <text evidence="6">Binds 1 lipoyl cofactor covalently.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.12" evidence="6"/>
    <dbReference type="EMBL" id="CACRXK020001020">
        <property type="protein sequence ID" value="CAB3986480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HJE7"/>
    <dbReference type="OrthoDB" id="537444at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045254">
        <property type="term" value="C:pyruvate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004742">
        <property type="term" value="F:dihydrolipoyllysine-residue acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006086">
        <property type="term" value="P:pyruvate decarboxylation to acetyl-CoA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06849">
        <property type="entry name" value="lipoyl_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.100:FF:000010">
        <property type="entry name" value="Acetyltransferase component of pyruvate dehydrogenase complex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.559.10:FF:000003">
        <property type="entry name" value="Acetyltransferase component of pyruvate dehydrogenase complex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="entry name" value="Chloramphenicol acetyltransferase-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="entry name" value="E3-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045257">
        <property type="entry name" value="E2/Pdx1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006257">
        <property type="entry name" value="LAT1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01349">
        <property type="entry name" value="PDHac_trf_mito"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23151">
        <property type="entry name" value="DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23151:SF90">
        <property type="entry name" value="DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52777">
        <property type="entry name" value="CoA-dependent acyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="Single hybrid motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 6" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="8" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0809">Transit peptide</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="160"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="253"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="204"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3986480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="502" mass="54606" checksum="24ADCF2E68C53CBF" modified="2020-12-02" version="1">MLNSRRFIPVFVKRVRVLQTRRAFGRISVRTTAQAARTVQNILPRSSSKLCYTSRVQKQSRYFSNDALPSHIRVPLPALSPTMEAGTVASWLKEEGEKLEEGDVLAQIETDKATMEFETPDEGYLAKIVAPAGSKDVPVGKLVCIIVENEEDVAAFKDFKDDESSAPATQPAEAVSDPPPAPPVAAAPPTTPPPTTPPQGAMPQAPPPAMPPSPSGRVFASPLARKLAREKGINLPSLSGSGPEGRIIASDVQTGAPVTPERPVAPQVTPEGEFTDIPLSNVRKVIAKRLLESKQTIPHYYLSVDIQMDDILELRKELNELGKAEYKLSVNDFIIKASALSCKQIPEANSYWMNEFIRQNHNVDISVAVSTDSGLITPIVFSADKKGLKNINSDIASLAERARDNKLKPHEFQGGTFTVSNLGMYGIKNFAAVINPPQSCILAVGQTEKRIIPDDNTEQGFSQAMMLSVTLSCDHRVVDGAVGAQWLQHFKSYLEKPATLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HSY5</accession>
    <name>A0A7D9HSY5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Retrovirus-related Pol poly from transposon, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A039191</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002060">
        <property type="protein sequence ID" value="CAB3992477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HSY5"/>
    <dbReference type="OrthoDB" id="427924at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3992477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="30999" checksum="6747E549F5536878" modified="2020-12-02" version="1">MPFGLTNAPATIQRMMGKLLRGIKGCLVFLDDIIIFADTWEEHQHILGEVLSRIRSAGLKVKREKCQFRQASVKFLGHIISAGGTEPDPVKVQAVQNFPTPTCLLEADASDNGLGAVLSQKRGGEENVVAYASRTLTAAERNYSTTEKECLAIVWTVNYWRPYLLKKSFEVITDHQSLTWLQGLNAPKGDEFVITQRPGRNNGNTDTLSRFSQPLTTQVVDEGLDEEIRVGVAATYVCSTWTPGDIRTAKQEDPVIVQVIEQLSKTKGEAGSRKSGSKMMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZX5</accession>
    <name>A0A7D9HZX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A013230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002203">
        <property type="protein sequence ID" value="CAB3993173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZX5"/>
    <dbReference type="OrthoDB" id="9449337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF31">
        <property type="entry name" value="GOLGIN SUBFAMILY A MEMBER 6-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="36"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="183"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="286"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="358"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="447"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="614"/>
            <end position="635"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="669"/>
            <end position="736"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="770"/>
            <end position="798"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="834"/>
            <end position="898"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="965"/>
            <end position="1000"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3993173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1000" mass="114663" checksum="0325B47E9F8D5D53" modified="2020-12-02" version="1">MVSHVEDKVLHSEDKVLHPGNKVLFSEDKDEVLLSEDKVSHSEDKVAHFEDKVSHSAENVLHSDDKVPHTKDKAPHSEEKVSHSEEKVPHTEDKVAKSADKVCHSKNKVTHFEDKVLHSEVKVLYSEDKFLHSEDKVLRSEDKVLHSEDKILHSEVKVLYCEDKVLHSEDMVLHSEDKVLHSEDNVPHPEGKVFHSEDKVSHSEDKVSLTEDKVLHPEDKVPHSEDKIPHSEDMVSHVEDKVLHSEGKVLHPGDKVLLSEDKVSHSEVNVLHCEDNVPHTEDKVLHSEDKFPRTEDKVLHSEDKVPHTEDKVLHSKDKVPHSEDKVSHSEDKFFQHEDKFFQSEDKVSYFEDKVFHSEDKVSQSEENVPPTEGKVLHPEDKVLHSEDKIPHSQDMVSHFEDKVLHCEDKVLHPGDKFLLSEDKVSHSEVNVLHCEDNVPHTEDKFLHSEGKVPHTKDKVPHSEDKVSQSEDKDKVLHSEKKVLFSEDKFLHSEEKVLHSEDKLLHSEDKVLHSDVKVLYCEDKVLHSEDMVLHSEDKVLHSGDTVLYSEVKDKVLHSEDKVPHSEDKIPHSEDIVSNFEDKVVHSDGKVLHPEDKALLSEDKVLYSEDKVLHSEDKVSHSEAKVPHSEDKVSLSEDKVSQFEGMVLHSEDKVFYFVDKVLHSEDKVLHTEEKVLPSEDKVPHSEDKVSHSEDKVFYSEDKVLHSEEKVPHSGDKVHHSEDKVPHLEDKVLNSEDKDKVLHSEDKVLHSEDKVLYSEDKVLHSKDKVLHSEGKVLHSEVKVPHSQDKVLHSEDNVPHPEDKALHFEGKALHSEDKVLYSEDKVLHSKDKVLHSEGKVLHSEVKVPHSQDNVLHSEDNVPHPEDKVLHSEDKDKVPHTENKASQSDDKVSLSEDKVPHFEDKALHSGKKVLYSEDKVLHSEDKVFHSEDKVLHSEDKVLHSEVKVLHCEDKVLHSEDMVLHSEDKVLHSEEKVPHSEDKAFHSEDQVPHPEDKVLHFEDKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I6Q0</accession>
    <name>A0A7D9I6Q0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055355</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003213">
        <property type="protein sequence ID" value="CAB3997874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I6Q0"/>
    <dbReference type="OrthoDB" id="5980158at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="29992" checksum="163E7A883CA7BE90" modified="2020-12-02" version="1">MKLANQCLLLFLFGFVLESAFGCKKHCAADYGSQGLPGSSCAEILKQKCDDAKDGIYWIIIGQSKPFPVFCNMEAGGWTLVFKLIAGISGGPVKTWKMPFPTYEYSLAALKTNNDFKHHYKNRIVQNWSAFKPSEARVVLYKGGKEEVVLRFNAANSNNANWFSAANVLESPWQDILSEKKNYFTIGGPCWGTGCRDFHINNVYGNCPRDVGWLSVGDSAECKWENRFPAGVKLIYSKASTHVNYNTFTIVLKTYKNITYISIIFHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I704</accession>
    <name>A0A7D9I704_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="5">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A031376</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Peroxisome membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the pex2/pex10/pex12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020003512">
        <property type="protein sequence ID" value="CAB3999083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I704"/>
    <dbReference type="OrthoDB" id="6270329at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005778">
        <property type="term" value="C:peroxisomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016558">
        <property type="term" value="P:protein import into peroxisome matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16527">
        <property type="entry name" value="RING-HC_PEX10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025654">
        <property type="entry name" value="PEX2/10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006845">
        <property type="entry name" value="Pex_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23350">
        <property type="entry name" value="PEROXISOME ASSEMBLY PROTEIN 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23350:SF0">
        <property type="entry name" value="PEROXISOME BIOGENESIS FACTOR 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04757">
        <property type="entry name" value="Pex2_Pex12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="16" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-0576">Peroxisome</keyword>
    <keyword evidence="7" id="KW-0962">Peroxisome biogenesis</keyword>
    <keyword evidence="14" id="KW-0653">Protein transport</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="15" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <keyword evidence="12" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <keyword evidence="11" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RING-type" evidence="18">
        <location>
            <begin position="241"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004585"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB3999083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="296" mass="34681" checksum="90F17C8BB678C158" modified="2020-12-02" version="1">MPFKAGHSEIIEASQKDDEYKSFFRNSMGEFFRDVTETQSWIKWKEEIGLFADIIYFGITTLSGYQTLGEEYCSLVQVDNTGQNIPTKWQRTFMILTQVVIPYVSKKFVRRLEQTLQCSTLDSQSKIKNTILVFMPLLKQFINVVHRLHLMAFYFSSVHYDIAKRMSGIQYVLARGVVRNEYYNPTYRVLGWVTLLHLTVSMVQLVQQSIQVFPKIKDIVHSTREQDLNSSKHSAITEFKCTLCLEKLHDMTATACGHLFCWYCINEWCRNKAECPLCREDLQTQQLVYLHHFHPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I7I1</accession>
    <name>A0A7D9I7I1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030978</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004277">
        <property type="protein sequence ID" value="CAB4002171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I7I1"/>
    <dbReference type="OrthoDB" id="5975977at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="565" mass="64027" checksum="71E32F683DFC9EB8" modified="2020-12-02" version="1">MLVFNFCQTSLKGEHLRAATDYIRTVVRDAMNLRSKFRDVGNRETISRLEEVINSIDTSNVWHVKCYSLFTSKDKIQRLEKKCNKDEASAISTSSPRKTRAQTKQVDWDKCAFCQVHTNERLSSVMTFKMSEQIIEISKFDKILCTRFAGISDLIAAEDKYHLSCFSASKRSRDKTKSEMKDYDLALVWLSKELEYAADKGHVIRLDDAWERYTTLAEKAGNTLPSSFISRRATFKDKIMHMVGDIIQHVQSFEREPSERHILLFPKKYAKMVLSQLVTQGTADEEDDELTLPVYHQQDDFLSLVHVALMIRADVQETPGYMGLDIGIHDVGDCVPESLQLFLNLLFGGERLLDKETIEEKENEVRRKALAVAQDILYGVSNGKKWTPKHIGLGSTLHQVTRSKDLVKLFHKAGHSLSYDQILHLDTGLAERVLNTMDEKSETVIPPNLVQGNFVHFSADNIDILDETLDGKNTSHATQIAGWQHGAENSSLLDGVNPSKKRSLDIPESMDKIGTIVARKSNSVFIKAVKTTWYDQAEDKKECKQAAKATDLAFNMLRSEGVIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBC7</accession>
    <name>A0A7D9IBC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003796</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004135">
        <property type="protein sequence ID" value="CAB4001615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBC7"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="379" mass="42677" checksum="16239B614B3FC243" modified="2020-12-02" version="1" fragment="single">MIPNKILKVFAYELAPVITDIYNSSIIQGVFPMNLKRSIVVPIPKVSLPQSVEDDLRPISLTSLISKVMEGFTLTKLFAQIESKLDTKQFALPGKSTTHALTYLLHTILSSLENTSCSARLFFADFKKGFDLVDHNVIICELENLGVHPAIVRWIKAFLSDREQCVRIENSYSSWKKTNGGLPQGTKLGPLLFAVLVNSLLKDWPGRVKFVDDTTVLEIIPRCSPSFLPIIVDQISDYANERGMRLNPKKCKDMVITFLKYKLVENDIFIGGDVVETVSSFKLLDVWLTNNLSWDIHVDKILKKANSRIYALRLLKEAGLSPLNIVHIYCAVIRSQLEYASPVWSALPKTLSDLIESVQKRALKIAYPTLCYDEACITQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ICI3</accession>
    <name>A0A7D9ICI3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004882">
        <property type="protein sequence ID" value="CAB4004351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ICI3"/>
    <dbReference type="OrthoDB" id="7442523at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="14523" checksum="CBB4064A642F5B7E" modified="2020-12-02" version="1" fragment="single">TRKHPEPQPAKLGSVLFGPLNDEIPESVYSQINGEMFRQAALRTKRSGARMTKTLCTQYIDPTTIEALIASRLIPLDKGEGAVRPIGVGEVIRRISAKCVMSFAKKDVVEASGSLQLCAGQKSGSEAAIHAMNTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J0H3</accession>
    <name>A0A7D9J0H3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Low-density lipo receptor-related 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A027352</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010031">
        <property type="protein sequence ID" value="CAB4018495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J0H3"/>
    <dbReference type="OrthoDB" id="7726766at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039:SF28">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039">
        <property type="entry name" value="FIBRILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63825">
        <property type="entry name" value="YWTD domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 7" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4018495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="331" mass="37042" checksum="D75132F6B963BED6" modified="2020-12-02" version="1" fragment="single">MADYIDECARGYCDPNADCVNSVGSFYCTCRSGFTGNGLNCSETCEDEILFYSTSSEIISNSSVSIPTTDNNILGYDKYNRRLLYYDDTQNLYSVGLNGLNSTVLINKANIAEFAYDGERGVLYYLNSLTLKINSVNISSGEDVPVQALDSLSGIKGMEMDIKNRYLLIAKSSDPPIVRFDITSLATQDINFDGSAQTLSVDQDNEVVYWDNFIVSTGTYNLTRSSYTGETVPLNISYDAEIDLAQDYMYLYVLDKENNRIDKYNKRTWVEINVSNINAGSRRLIVAFDYDECCVGTYCPDMVNVSKCLNTPSSFECMCYEGYFLNGTICQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JAS1</accession>
    <name>A0A7D9JAS1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Fragile site-associated protein C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A043482</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013865">
        <property type="protein sequence ID" value="CAB4025863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JAS1"/>
    <dbReference type="OrthoDB" id="10051416at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098793">
        <property type="term" value="C:presynapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048488">
        <property type="term" value="P:synaptic vesicle endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033616">
        <property type="entry name" value="BLTP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056741">
        <property type="entry name" value="BLTP1_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047104">
        <property type="entry name" value="BLTP1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31640:SF1">
        <property type="entry name" value="BRIDGE-LIKE LIPID TRANSFER PROTEIN FAMILY MEMBER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31640">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN KIAA1109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25039">
        <property type="entry name" value="BLTP1_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20413">
        <property type="entry name" value="BLTP1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bridge-like lipid transfer protein family member 1 N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="Bridge-like lipid transfer protein family member 1 middle region" evidence="3">
        <location>
            <begin position="611"/>
            <end position="842"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="305"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="553"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="891"/>
            <end position="914"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="956"/>
            <end position="1031"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="305"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="324"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="553"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="898"/>
            <end position="914"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="972"/>
            <end position="986"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="992"/>
            <end position="1001"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4025863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="1127" mass="125918" checksum="BAC89E4A79DD289B" modified="2020-12-02" version="1" fragment="single">MFSAEDRPIDVETLEYAWLLELQLGTLSGKVTLPQLLTVSNWAELFAFHLLDEENGMKDPSPHKICQHGVLQSKCDKRPKINEDLDTGEDITSLCQTEDDFKYKIIRISVEEIDVSLIEASCCCNVKISPIRVASCNLHTDSTKTGVSVFVHKIDISQYVLLLAGNKLKNQVGQEEAGWLEAASLHAGPIISDICLEEDNNLDPTDQKEFLEKHDKKTQRLWFLWQHDKARGTSLLSEKDGRCGCVGGCSFFGKNVNGPVFFKLDYLDAGQEEKEGRLFGSPDGWQNIELDGDDDAFMENQSSPKTIQRHNSWAGRSQPPKFRSISSQRSARTFRSRGDASRSNISTYATFPIKAKEKVLSGTSAWSVPDNFQKAAISIGNERRGSPRRTSVEESQFDRQRLPSDASFYSCTSGLDSSLPSRPASIVSLDSFTSAVESSDQPLFEMQCEDFQKQFILLPSVLLSKYRSHLAQMHCEHWLENEYLTAQATRKFNLVQNLKAIDQIPRTSPKRLEFTPCYTGRYHTLLSRKITEDSDVSMPSVFAEDIERRPGLKRDVSLSENDSDKTPGKMGSLKKRRWKTEINNESSQSMSSSKHPAESLTSNKECVQLNRGTSIVRIEGFVNIMLSPLLLEALDRYSRSAAEQINSLHPCTILDKIHVKSLDVAQKKYKMDLPDKSLKKTESRQNIFISVPGVNVCFLQALTSERRVSTISLTTASSESELSDTMHANYHPNPSLSLLAVRLNGFSGQIIVHNQRKASLAKYMHEKMEDAREEHVTSNESVPQSPTVDTKKCDTENVGNKLAGNFNLEQIQLQFSRLCNKSDVENSHTTAIPPKCSKVDFIYSSRNIIQFSKALNVKNLRKEEIVIFVMLESGMDNISLKVGNCAKLKTGEKLKRQAPSTKKSGHNRSQSAPAQLLSKITQCDVTDAPRPSFQHTLHENYSEQMLESIVVEKQPGIPMSPLQPGIPKDDSASSITSSLSARSDSTGNLTDNESEGEDETDAQPLLARRSQETGRVGKPLTPSIATKEDSPKPAYLLHHQNDVVANFKCIWFNCASPSSVKPVPENYHLHNNLLTTGIPAVSSWMPGAEKLRATLARLQNDHRRRFYSVTSCIMALGLPEKNKMLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBY7</accession>
    <name>A0A7D9JBY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043927</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014166">
        <property type="protein sequence ID" value="CAB4026388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBY7"/>
    <dbReference type="OrthoDB" id="43547at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033228">
        <property type="entry name" value="SZT2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14918">
        <property type="entry name" value="KICSTOR COMPLEX PROTEIN SZT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14918:SF3">
        <property type="entry name" value="KICSTOR COMPLEX PROTEIN SZT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="344" mass="39372" checksum="950253F34ED0B236" modified="2020-12-02" version="1" fragment="single">PQSSCDSSELPTIQYVLYDPIRPPLLASDDKETSVDKSGSYMTTSARPAASFLFISRNVTQWRHNLQKVQDPCHMESDVETSHKDFYSSQQFESWKWNSNDDGGERSKDSSAAFSNCAPGFVSRQRLILINIKDKEILATTYNLSSEVNTQFSTRLTHLVNWNNARCHLVSCLFQQKMGLFHHSTFQELNKEVNPFCESVNDHHLFSLLKQTAPEKSSSSQKQQIPSVGKLLFEETLRDVVPPRPLQTTKHCTYRDPVKRHGAQFQEIRAIQIRKAVQNAELQKLFTSWLRRGGFNTGTGDNSINLLKRQSRLVHCCKTPFLVCDEWISSVEEKANLNVSKKEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHT1</accession>
    <name>A0A7D9JHT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zf-CCHC domain containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016408">
        <property type="protein sequence ID" value="CAB4029785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHT1"/>
    <dbReference type="OrthoDB" id="116216at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888:SF1">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888">
        <property type="entry name" value="ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="293" mass="32839" checksum="A2F76CDEE789E243" modified="2020-12-02" version="1">MGIFVLWLRKFELCSTANDWKDTDMLKRLPTLLSGKAFAVFERLAAEAKEDYKTLTKALTAAFGGDTTGKHLAMMAFRSRTRKPDEDIQVFAYNLEALLRRAVPKIENGDRDVLLQQQFIEGVPRELKMELLQRPSMSYEEMVAVAQQLDLVSQISSHQTGSQVNLASASDNLQTTTRDQSLVAQLMENVETLTRKVSELSVSVANVNATSARNSTRGRQGPCYQCGKMGHIANECRSTGNGSRQPNYRQRSAENYCFVCGQIGHFARECRFRYQSPVAGQPRQGNDQGPTHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JIR2</accession>
    <name>A0A7D9JIR2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017081">
        <property type="protein sequence ID" value="CAB4030709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JIR2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11935" checksum="7268D67128BC1582" modified="2020-12-02" version="1">MKLPGQERWSAGTCTQQVDSRSYIVKVGDNKYRRNHKQIAQSQEPPILEMPEVVEETNAPNHPRQATPAAEVNNKKTPDGASTHSPGLRRSARQHKTPSSQSDYVTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JJ61</accession>
    <name>A0A7D9JJ61_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A060082</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017289">
        <property type="protein sequence ID" value="CAB4031007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JJ61"/>
    <dbReference type="OrthoDB" id="5961068at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="31587" checksum="94D1C2ECC6B0BA06" modified="2020-12-02" version="1" fragment="single">MAFDKKGEFKPIRSKYLMVKAWPEYNKWQLLSEAVKKHTNHDRSFTLLSNEWTLVYPDGTEVLSIPGKDDVLFTLEGYKQELCKAYNRITLYLANPKDISTFEASRNVNQSDYEDEENMQDIQCSENGESYHFYLDTHHEVVTIPSSETAQASTIINDSPQHQDNMTPLTLDSQLHTLMEIFPGRDEESMRVAISSTSSLEEAIQLISVDIGGSLHSSYANLCMEDVENDDLIMSPECYFVTDETVYCTDKVLHMLLNNQAKKFVGDGEYTRMKVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JLC7</accession>
    <name>A0A7D9JLC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058112</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018252">
        <property type="protein sequence ID" value="CAB4032247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JLC7"/>
    <dbReference type="OrthoDB" id="6144466at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22744">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003323">
        <property type="entry name" value="OTU_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50802">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18692" checksum="C87EE96F77621E24" modified="2020-12-02" version="1">MTQHEKRLIDEHVQNLGKIRKVVPEDGHCMLHAFVLGLENSQYKLVELLKPMIKKEVMDNINFYTPFLNNGWEAKLDDYLRHKKYDASVVDLMYHILANITNSSVVVFYLQDNNVCELPKIHPRNGDSGCVIYVSRIGQHYDAVLDIESEKRVKFEGRFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JQN7</accession>
    <name>A0A7D9JQN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061896</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019441">
        <property type="protein sequence ID" value="CAB4033663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JQN7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="286" mass="30879" checksum="84F89CFC9B59AD36" modified="2020-12-02" version="1" fragment="single">MAKQNQFLLIFVYVIIVTCLGSPRNTKKSNIIGEAANFITSATSKISGSSVSSLGKTMASAAVGYYMSQVESGLSIVILNSMSTRYLVNQKLFLLNGKTVGPPVLIIPPGAKDQSEAKLLFLERCPQGTLCYELLSSTTQAKLKLVCLYFYASAGEKNKFSVTTSDDLNILKETSVKTVLETLTSDRTIGENMVLSPSGLQFIAIAQMTTGENARFFFEIRDNFNLIQSTALKRELVSALAVGLAVGAASALVSAAKKYMATKYGTILTLDNVSNNNDPFILYDPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JSA0</accession>
    <name>A0A7D9JSA0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018921</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021118">
        <property type="protein sequence ID" value="CAB4035506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JSA0"/>
    <dbReference type="OrthoDB" id="5988397at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="468" mass="53159" checksum="B0308345CC7A1A8D" modified="2020-12-02" version="1" fragment="single">KQEELTQKLVAENKKLKGKQAKLKRLQSKVRTADEDIQERIKKKKNSEKGFFTLSFTEKRLQSPTALNEKGNINGPERTARRKIQETSEVAMKIHGGTPSNMQPAYFGLFATLSNGASASTLTDMFYKSPTVMTKVIPNVVNEKVKAFDNSKTNFVRSVNVLYRNGLVSKEKYIISIRSALSMNNKENSNSKSHTEFMSNCNVPRILPYKELMYKIKGIDIGNLYDLNEQFCTGLGNDDHIEGKYRDLTELLLRLAQFYLKVNEHRLDKLIWYNNKQAGHFNVAIGGDGAPFGKADSALAWLVSFLNCVHRISSRNENFLLLGANCSEDCEAIRRYVLKLSQDIKEIEKKTYSVSVDGQLWNVSFSFDMFPNDMKYIAYLAGELSISATYFSPFANVKKADICDTKSAFGVEPSHKWKPWTYQARIKVASAVAKKKQELSHSSLKPTTFRNKGLGQNFHLCWVKRLTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JTV0</accession>
    <name>A0A7D9JTV0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SURP and G-patch domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072832</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021137">
        <property type="protein sequence ID" value="CAB4035531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JTV0"/>
    <dbReference type="OrthoDB" id="5984088at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd14279">
        <property type="entry name" value="CUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="572" mass="63737" checksum="C4EAC2FD8F3E7677" modified="2020-12-02" version="1">MKSAIESNRGVRGVATILCGPLTIPNPSPFPKWEGVSLINDIQFKTEEMKVWRAYDVGHGKSVPYSNFTQTKKTELPSLTKITDVPSTNLVFCEVMPRKCHVAKDKDMKTSADDNSSDTDEDMLFTCPEDGCVKTFQRFSSLRKHLDGGRHKYALERESFLDKAMLRYAENLGSGAASIVGQVEQIAEESKTGQKADASDVSKSMRKARNADGSLLFLSNEYLTSQQITSFFSRTAAKKSIQVTSASNLDLDDDDDLDDLVSAMAEKELQQMREEILNDISIQHPITYESYNICEMATASKLSKFSMAMLQEICKHYELDTSRIQWKIDHVAHQDDDDMLNDDGVPDIRMSIVLPQLKQIFPGHEDSQLQSALENANFNLTSATEIILGQGAVKLVEDGIDIPMKPIIYFEGQDDHKVPVHNQALRQTGSFKAIGRILAPAFLHNGPCLGGLSPAVKHYFTCKQGQDTTVNPPPLEIMDVPDVELQAMLEVLQSPRHESLPNSLVSNLVPYLIKAGIDIEGKLSSREIVVQGLLLFFVIEKRKLELDDISTGMLNAIRYPINLSYLLEEKSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JZM1</accession>
    <name>A0A7D9JZM1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025014">
        <property type="protein sequence ID" value="CAB4039154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JZM1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12758" checksum="803EB8A9BF215A55" modified="2020-12-02" version="1">MTSQRGELRRGDSLTKMTAQEFYESLQDECKEKAEKLTQELKMSADELSRRRSPRSQRHSELFRNVSSKMANHMKTDLENKIYKQLWEEANAAVFQNLSSRQLSEEGLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K1P2</accession>
    <name>A0A7D9K1P2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TBC1 domain family member 30-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006789</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024583">
        <property type="protein sequence ID" value="CAB4038789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K1P2"/>
    <dbReference type="OrthoDB" id="289721at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="25"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4038789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20721" checksum="EAE8ADB1D9AD8C3B" modified="2020-12-02" version="1" fragment="single">MESFIDITSGQKKLQKPISYGDNESVISDDSSSPKSIDSDYSFETTASSLEDEQGQYTSDESRASSRLSRQSSIVDGLLTEIYDRYHHGSRSGDSDNVTECSTTSFYSGSFELDERTQRWTRSQLNGKDLGEIRRVSDELSSYVTLLSGRLVRQLKRRDKNAYKLQRNFDILTAILQAVSLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K2H4</accession>
    <name>A0A7D9K2H4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056399</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025489">
        <property type="protein sequence ID" value="CAB4039509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K2H4"/>
    <dbReference type="OrthoDB" id="10535180at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1750.10">
        <property type="entry name" value="Hemolytic lectin CEL-III, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028988">
        <property type="entry name" value="CEL-III_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111265">
        <property type="entry name" value="Hemolytic lectin CEL-III, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="12118" checksum="697A0642016D7FC3" modified="2020-12-02" version="1" fragment="single">EWTESQESSEEITFTCEVYDNGQPFLGGCMWQLKLTTEQTTNDDELAWKPQIVRCTRGTTAPTCPPFTRCQDEACTMCEGTVFGKKKRKHSVKRSFWKMVSKTHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K910</accession>
    <name>A0A7D9K910_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077002</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031537">
        <property type="protein sequence ID" value="CAB4043112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K910"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="31930" checksum="F65A4C378ED15B38" modified="2020-12-02" version="1" fragment="single">MFAGFSSKNSQHSCVTFQGVGKENINVYSGRITRLEEENKCLKQEKKDVESEMWKTQEGLRDEIRRLEYEIKSTSKKMRDAETKYVNLAATPPKVQVRTVQVVSEEMKRKLEETAEQNRKQEYLLEQIKKEHSAKVAQHRKLEDVLEQTKMEHSSKVRESESEQFRLLAQMKTEHNSKVKELETEISSVKEKHRQEIDHILNEKQEEIEKVKSEAERTTGGLRKLYRSLQENCLRLMKESRDLKNHQQLLKLACLKFTTALKPTCREVHKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KGG1</accession>
    <name>A0A7D9KGG1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037045">
        <property type="protein sequence ID" value="CAB4044965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KGG1"/>
    <dbReference type="OrthoDB" id="5988402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11850" checksum="99D0C3A6F73F6765" modified="2020-12-02" version="1" fragment="single">MQRVQNAAASWPSFVTNRYCSGKDVLQLGWLPTLERTQLNLLKHTHRAIYNKASWPEYLTLEVYNPGRTPRSNAAPRLSIPLIKGTFQETTANLFNDLPPEVPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1S3</accession>
    <name>A0A7D9L1S3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011316">
        <property type="protein sequence ID" value="CAB4021198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1S3"/>
    <dbReference type="OrthoDB" id="8123403at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="485"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="485"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="523" mass="59948" checksum="2EC4F9E8A8B74DA0" modified="2020-12-02" version="1">MKVLFQELCQSKLGWDEPLSELLYHKWQSWCDELNKVGYIEIPRCYLSNSADGSISYQLHGFCDSSCVCYAAVVYLRVETEVDIRTSLVMSKTRVAPLSQTSIPRLELLSALILARLMAKVMSALQSVIDIDIIKCWTDSITALFWIQGKEKEWKTFVENRVNEIRSLVPVECWSHTPGRDNPADISSRRAKASQLQTSDTWFHGPSWLVCDEGEWPASKSLSQPSDECNQELKLNRGGLSTTSLANTQVNLTYLLDPKRVSRFHKLLRITAYVLRFINHIQRKPYSTGSPTTAEIKAAEIIWTKEAQRDMDIKQLERQLGLFKDENQVIRDDIEEAITPAHLIIGRRLLNLPDGVVREENFDGESGKEAVQRRATYVAKKIQHFWQRWKREYLVDIREFHRPKKGNISTSPVQVGDIASLRDESQLQRGLWSMGKVERLVTGRDGNVRGARVLRVKNGKRNIIDRPLQKLYPLEIRCANTEEDKVKPARGDEGKTETFERTTPKRAAAVIANDRIGQYFEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LF78</accession>
    <name>A0A7D9LF78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045380</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018720">
        <property type="protein sequence ID" value="CAB4032813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LF78"/>
    <dbReference type="OrthoDB" id="6600976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19330" checksum="FEDE407997C9AD1C" modified="2020-12-02" version="1">MVLRGLKKLRSSKEKFFSKLSNENISDTDYERACTVWNTFNMKTMRNYHDLYLNTDVLLLADVMENFRKVCKTNYGLDPMWYYTAPGLAWDVALKLTGVELDLISDPDMYLFIEKGIRGGISTITKSLLHRIRRYSDGCVVLGVCPLRQLLPCCPRGGTQLPITPGLAPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LK88</accession>
    <name>A0A7D9LK88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049210</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020089">
        <property type="protein sequence ID" value="CAB4034415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LK88"/>
    <dbReference type="OrthoDB" id="7923847at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051746">
        <property type="entry name" value="Kelch_domain_containing_8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="372" mass="42523" checksum="EF1EB71EC8DD8B2B" modified="2020-12-02" version="1">MNKRINEKVETIKNRHDEMKQEQHEVKKEIKDVKENLSKVNKDVDEVKVMMSQMLEKFNMLELLSKHPSPTQGMFNTPREDILIAAGWLRDAKHSAEIFSWAKNGWYEISQMNERHGGASSFIYNDQLFVVGGLTKTIETLNLNELPLKWMEFSGRLLDESYDCQIVVYQQRVIHIGGHNCVDDIKTSVISELQLTSRCRLKRLCQMPQPRVCHGAEAFEDKVLILGGKDNNGDVLDNVLEFDPKKNECKELPSLPHPIQRMATVRWRDQVVVLGGRDKDGEVLNDVFMYDCKTGKITALPSMLETRYNCCAVITGNTIVIMGGWNNDVWLSRSVECFTMGGSTWKYLPSMNDKRCGAVAELLPSTRKCVYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LP82</accession>
    <name>A0A7D9LP82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A088690</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020271">
        <property type="protein sequence ID" value="CAB4034617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LP82"/>
    <dbReference type="OrthoDB" id="6269447at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098998">
        <property type="term" value="C:extrinsic component of postsynaptic early endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098978">
        <property type="term" value="C:glutamatergic synapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098837">
        <property type="term" value="C:postsynaptic recycling endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098887">
        <property type="term" value="P:neurotransmitter receptor transport, endosome to postsynaptic membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905244">
        <property type="term" value="P:regulation of modification of synaptic structure"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0099152">
        <property type="term" value="P:regulation of neurotransmitter receptor transport, endosome to postsynaptic membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0099158">
        <property type="term" value="P:regulation of recycling endosome localization within postsynapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026204">
        <property type="entry name" value="GRIPAP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18978">
        <property type="entry name" value="GRIP-1 ASSOCIATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18978:SF1">
        <property type="entry name" value="GRIP1-ASSOCIATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="157"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="235"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="23"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="158"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="238"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="29310" checksum="42165E71B5088022" modified="2020-12-02" version="1" fragment="single">MADIREEDFTRMQAQIIELRTANYDTEVKYQRQNNELEQLREKHSQVEKELEKSNKIIQKSKNRKEYALLLEENEGLQHQLRDHEEDFKLQNKTLLEEVTRIEDENKKLLDDIKNLKSGKEGDSTSTHESELRRLKAENAVLQKSLKSTQALHEAELQKSNGKDNLQTPAVSREPDADGEIPDTLKTGGDAVTTTDNGIQGQQLTLNEILDEFAQQINLTFETFCNDFELQCKRSEGQEGESVDNDESDAKSGDTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LRX5</accession>
    <name>A0A7D9LRX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030858</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021001">
        <property type="protein sequence ID" value="CAB4035385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LRX5"/>
    <dbReference type="OrthoDB" id="5988199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="148"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="260" mass="29834" checksum="B09B2ADFF4F58A7E" modified="2020-12-02" version="1" fragment="single">RARIKDTFEFETRENGQQVITTAIHFDKFEAHCKPKKNLVVERHRFLTRDQNTGESVDQYVTELKTLAASCEWGDLKDDLICSRIVSGISSRVVRERLLKESELKLNKAVEICRADELSRQQMKLFGSEANHVNQVKRGGVNRVQNKSKSDKTQKAKKATEGKHEHKRNACGNCGLIHPKGQCLAYGKQCNKCKKMNHYARMCRSSKSVDLCRQEKSDEYLFLETVKVESVDRIRQSETEHVTLSLNNHDIRLKLDTGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M1A8</accession>
    <name>A0A7D9M1A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029003">
        <property type="protein sequence ID" value="CAB4041829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M1A8"/>
    <dbReference type="OrthoDB" id="5989453at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF4">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="38813" checksum="E0489FD09E4E4BDE" modified="2020-12-02" version="1">MENIHSTRLKEKILSRIPELHESKKGRDVVLTFKDELILFNVVKHKRRKANELDKLRHSPALETPFPLFTGLLIHANTRKKGLLNTFAHKGLSVSYKKVQDVQLNITKQLCKKYNGFVCPPSLKEEVFTTAAVDSIDHDPSSTTATKSFHGTSISIFQHLEKALEPNQIDLSVDFEDSSTKIELPESYTNLSPTKSKAAEYPLQTVNRENSSDVQPMDEMDDWLEHLMQMNGKDDDIKNRFSWSGFHSKKSAIRAIKTTSTLLPLLNESVNSTAMLRHTMGVVKQILLKINPQQPIVLTADQPVYAFGKQVQWMYPEFYGESNVVTMMGALHIGMAFLNTIGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2A8</accession>
    <name>A0A7D9M2A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sorbitol dehydrogenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A069245</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026822">
        <property type="protein sequence ID" value="CAB4040458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2A8"/>
    <dbReference type="OrthoDB" id="1879366at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050129">
        <property type="entry name" value="Zn_alcohol_dh"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43401">
        <property type="entry name" value="L-THREONINE 3-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43401:SF2">
        <property type="entry name" value="L-THREONINE 3-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0862">Zinc</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4040458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="36818" checksum="0A3D4DBF20936E8B" modified="2020-12-02" version="1" fragment="single">MAGKTMKALVKEKEGVSYKYMDYPVSGPDEGELLVRVTRTSICGSDLNLYSWNEVARTIAKVPFIPGHECVGEIIKVGAGCPDSFKIGQRVCCENHYFCGKCYQCLHGQENICQHLNQYGHGNGTVHGGCCQYTIIPARYAYVLRTDISDNAACLLEPFGVSHLAMEKLEPADESVLIQGCGPIGLMATGIAKAMGAKKIIVTDIVEQKLELAKKLGADILVNGKRQSLAEVVFRETDGYGVGRILEASGNADLLSNCFKLLRKGGVVVLVGLVKQAFHVEDFLKDILFKSLTIKTLHGRHIFSTWEKAEKMLHQRKVDIEAVISHTIPLSKFEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M2U6</accession>
    <name>A0A7D9M2U6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002332</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029157">
        <property type="protein sequence ID" value="CAB4041920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M2U6"/>
    <dbReference type="OrthoDB" id="6130266at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4041920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="174" mass="19587" checksum="62FE455327F8AEC1" modified="2020-12-02" version="1" fragment="single">SWKPVNTNTIAKVDEQSNRYQSEKHVSADEAGGGHYTNIPTKNRYSALSVDEANAEIVPKKPDVSTNLSSPEQRSRERKNAKQSDARHNENPKNNMSERATRKIAIVGDSMLKHLKGYKVSKENKVKIFTFPGSTTRDMFDPIKPVIRKKFDQVIIHVGTNNLREYESSAACAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FCU9</accession>
    <name>A0A6S7FCU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000012">
        <property type="protein sequence ID" value="CAB3976778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FCU9"/>
    <dbReference type="OrthoDB" id="8065733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3976778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="22873" checksum="3B40167E3FB6CD81" modified="2020-12-02" version="1">MSRSARVGELEIDVLIGADYLCNFQTGVTKRGRSGEPVAIETELGWVLSGPLRVQDIEGAELAQVNFVAQRMNDEDSLESNVTEAEEVEEDKVHEEFLDGISFTGSRYSVKLPWKESHDKLPDNYANSLGRMKNQLRRLKEPALLTEYDSIIREQVEQGIVEPVAALEKVDMMLHLKNVNQEHHLMTACMLGHPSIHYYIAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FHZ0</accession>
    <name>A0A6S7FHZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A007772</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000039">
        <property type="protein sequence ID" value="CAB3977252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FHZ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20670" checksum="5B3641FBD6117FFC" modified="2020-12-02" version="1">MVPDYLKDWPPNFVKHCLTTVEKVEEKDITCSNHEQGRFLVKSLRVKNWQFTNLPVSYRESVFITLDNDDLLMNRQANSIHTQSVNSSRAIEEPHSPNESPPFDQETPYSTPTKVPIPSEQPDSVVKLKKRFHEQLSGLKDVSFLVEDTEVLQEAITTRDLASATCHELKAFFLEVVLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FKN6</accession>
    <name>A0A6S7FKN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036843</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000242">
        <property type="protein sequence ID" value="CAB3979928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FKN6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18852" checksum="0B00E1A2A1D154AE" modified="2020-12-02" version="1">MVSTRTYYFETNTTLYMLKHVLRLYNAGSKRLFFYKYIHYRVDGSLKTVGILQFKIRYSPTALKRYLAGEGVVMNVLKPVNKPLVLTHMRIWVLQQYHRILDCEENGVFCFGGRQRSVVNAMQPYIDALMSSCEPVFSDKLPGAKKLWFYKYMLARAKTPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FMX4</accession>
    <name>A0A6S7FMX4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017901</name>
        <name evidence="2" type="ORF">PACLA_8A055956</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000038">
        <property type="protein sequence ID" value="CAB3977226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020000038">
        <property type="protein sequence ID" value="CAB3977227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FMX4"/>
    <dbReference type="OrthoDB" id="5986954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3977227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="387" mass="44343" checksum="7E5C9FF4F447C20B" modified="2020-12-02" version="1">MSAMQFLKNSRWITGSRFLWQPEDELIEPTPIKAIPLEDPEVKQSCFSTNVKETWSLDEQNTGECCGKDIPNANYVTKSSLLYRLKPFHDALGILRVGGRIKHADVPYDTKFPIILPWNSHVTVLVIRYYHKKVAHQVNALRLASDVTPKGGVKTFVMRQCILCMQNHPLASCQKFKEMKLKDRIDFVRKKELCFGCLGMGHFSNRCLARKKCDVCQLKHPTHGCNEDTTSSMILPVWLYHQEDPDHQIMVYALLDPASNGTFIKTETLNKLGRKGVDINLRLNTMHSSEIITTQKITGLKVEDLERTTQIELPMAVYCRSDIPSRRSEIPHPEMANKWDHLCELTTKLPRYQERIEIGLLIGSNCPKAIKPQDVIRMQLELFLVGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FPG3</accession>
    <name>A0A6S7FPG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Fanconi anemia group M -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A006190</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DEAD box helicase family. DEAH subfamily. FANCM sub-subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000393">
        <property type="protein sequence ID" value="CAB3981468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6513042at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000400">
        <property type="term" value="F:four-way junction DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045003">
        <property type="term" value="P:double-strand break repair via synthesis-dependent strand annealing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036297">
        <property type="term" value="P:interstrand cross-link repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18033">
        <property type="entry name" value="DEXDc_FANCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12091">
        <property type="entry name" value="FANCM_ID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18801">
        <property type="entry name" value="SF2_C_FANCM_Hef"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd20077">
        <property type="entry name" value="XPF_nuclease_FANCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000861">
        <property type="entry name" value="Fanconi anemia, complementation group M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1320.20">
        <property type="entry name" value="hef helicase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006166">
        <property type="entry name" value="ERCC4_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031879">
        <property type="entry name" value="FANCM-MHF-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039686">
        <property type="entry name" value="FANCM/Mph1-like_ID"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044749">
        <property type="entry name" value="FANCM_DEXDc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047418">
        <property type="entry name" value="XPF_nuclease_FANCM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14025">
        <property type="entry name" value="FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14025:SF20">
        <property type="entry name" value="FANCONI ANEMIA GROUP M PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02732">
        <property type="entry name" value="ERCC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16783">
        <property type="entry name" value="FANCM-MHF_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00891">
        <property type="entry name" value="ERCC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="RuvA domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="836"/>
            <end position="1016"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1069"/>
            <end position="1112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1130"/>
            <end position="1149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1434"/>
            <end position="1463"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1853"/>
            <end position="1911"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1923"/>
            <end position="1987"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="2058"/>
            <end position="2107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="2308"/>
            <end position="2449"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="27"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="855"/>
            <end position="864"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="867"/>
            <end position="887"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="918"/>
            <end position="927"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="971"/>
            <end position="986"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="1072"/>
            <end position="1089"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="1091"/>
            <end position="1103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="1440"/>
            <end position="1450"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="1878"/>
            <end position="1887"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="1961"/>
            <end position="1974"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="2079"/>
            <end position="2089"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="2319"/>
            <end position="2333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="2339"/>
            <end position="2362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="2365"/>
            <end position="2374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="2379"/>
            <end position="2415"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="2416"/>
            <end position="2446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3981468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="2792" mass="313444" checksum="5095B08A53D7E8DB" modified="2020-12-02" version="1">MNKCNRSSGQKTLFQTWNKQTKKPEKQNSTSLFETWGTSTTSTSAAHQEKREDRESLEDLITIGGDDDDELLAAVDQMEECENAKNNHDVCNLSFSAGTNDDGCDVIPGFDCSAGNSWIYPTNYPVRDYQFNIVQKALFHNTLVTLPTGLGKTFIAAVVMYNFYRWYPQGKIIFMAPTKPLVAQQIDACYNIMGIPRQDTAEMTGNMAPTKRENAWKEKRVFFLTPQVFQNDLSRGSCRADDVVCLVFDEAHKALGNHSYCQVVREVLGYTQNFRVLALSATPGDGIKAVQQVISNLLVSNIELRSEDSVDIKPYTHQRQVEKIVIKLGDELEFFKTKFLRVLTVVVSRLFGYQALWTRDAARVNKCMLLAAREQFRKKCAAGQQPRHQIGPIEGDFAVALSLYHGYDLLMQHGLLPFYNFIKGIVDGSKGTSRAKTELTRNPDFVGILDDLRDQIEPEQLNNNTNGSNVKPSFIGHPKLVKLKDIVLEHFRACKNTPHAGNTKGSRVMIFSQFRDSVQEITRMLSAYKPLVNVMSFIGQQSKGTTSKGLTQKEQLEVIRQFRNGGYNTLVATCVGEEGLDIGEVDLIVCFDASASPIRLVQRMGRTGRKRDGRIIVLVTEGKEEQIYQRSQRNKSNIHKTILESARTLDLYMENPRMIPKNIKPVCQKMFITVDAISPKNKRKSAKAARISTDGNIKKLLTACSRTGFLSSQELRYWNDNFKLPHHEAGLTSSKTTPIRPRGPQATGERYIQTELALSLTEWTAWQTPLQQVHFVNHSKRSRLFAEILDFCDFRRDCGDDDDSYDLEMQSFLNREDIMEPGEMEDAACVLENADKKKTKAQGGRKGDDVVVVNDSEDDGEDGSDNMMEKKDNDKTSKKDCSRKGKSTDFSLDSDDDGHDDITRKKNGRNNTNRAREGSSNMAGKSNESSRKRKSTDFGSDVDDDFEDVLVNAPEKTTKVDQNQPHCDPFLGRKPEKISPAKKQLEPSHSLAKKQSESSNFFRKNPSKCGHTLTNNQLESIRSLKKNQSESNLRIKNQSKCVTTEKNASDEPETAPCFIENHSEFSQERNDNVLGSDNDLSDLLDIPSSQRQRKIPRGQKPKGLKPDGVVSEILPDAPSLDTLLDLSASNAGEGQKDHSDFQEGESDNDFFPTMFTETPRSSKGKIYNNISKHIVQSNQIVLGKRKSFGEISDKECDIFGIKKGDISAKLSTSKKLENMGKQEVFEKPNNSISVDKSMFRRTSGGSVKVDGLQERESLGNALVRNRNVEAADKVTGGDDAARIASFNERTFEKEMFELEDKIQDGGLEHRTERDHLDKEGSPVFGSGLVCDTGSRKNDDVDFDFSQELANSFFEDGDNEICRALCDIQSPCLFDDGFESNTEQPSKLQGAIKRFSHGNLNSEVQNIDTKKSNFQTPNLFDVDVLENMSENDYTEKISKPQRANQHSSPKNENIDTKKHNVQTPRLFDDEEVENKDSEKRTMELHNRGKRLTPRSLYLEGDDLSAKKEDCGKNIVEKLRKPLLENNTDSKITNESIKFKSRVNESSLSRIRSFSFTKPDIDQSKSLKDMTSDSRDEHIHIPGEYAHDVVAPTPYRVKRRTSCFGKVDKTRSFRGESFSMKSVCSEKGESNEIKTCQNRRSMLKLKSKEMKENLKSSQGVLVDAETLTSSLFGGAANKEKATTRTDRTLEAIPSLSQNRKNNFTINVCPKLVEGIESSSNETKSDKPLTPLAKLSVKKNSLSAKNANKADFIQPQVAEPFYTSVGSSFQHGLTDEEIDIVCLTASTKSNSSFPCKERNSVCLQDEHGNKEHVDNDEILKEKSIFKSPPQADRKSVSGFITCGSNKNVSGAECEEDLRESVEDSPLVTKGKMRSNNKVLESDEEYGDESSDNNGEYGEERQVTNELEADFQDEASVVFTREVQEISDSDDQFDQPRKVKRKRKLPVHGQSKENKPKKRRPLLDDFLDDEAEVSEDEMNDTHGSSNDEDGLEEMEDSFIDDRSQLTQRSPLTAMKHKRKDKSANMMDIYRTSLLTPHRQQLRFQTPTFHRYKNRYKLVYDKNPPARNTFTSPTDDDNHYDVSMETEESDEDTMVEERDVADPPSVSPEESQIVLRKNRRGKKRVLAESFFNSPEAPDSEHQTKLCEPQTKLCEPQTKLCERETKLSEQNKSLGPTQGVCVKAKDTKNISAIYSKKSCSIAADNAIFKRPGAIFKCPGNTAPVSGNRRLNGTTEFSNGYAGDNENIDDILAVLNDCDDESLMMEMNALPSLASALEDSALGKIGDTENTSAIPLRTFSRKTADYSSNNSYRATINTDVRKPERTCGNTRGGNTNTNYDRNNETSSLSKKPNLSGSLQHNSNNRQLFGTRSPASSSSFNSNTLDRQQKSRNDSNDQHRNLKCNETEMSKAKNGDCVEKRSVTESNPSNVQQKSRIGLSSGQKFHSGSKTLNNIDGGVRTNVKQNLNSNNYTRFGDSVKLNDYYEIKCKPNETLSASRTANKQKDISPVFPPLSTITSAKDKTSYVHVLPEKTTGQVSSFEQTKLDTSKAETEISVNPAKVDSPALTAAQRDKNKLTILVGSKEVSNCQIVSFLRRKHNIKTVVSQITGCDYIVSTRMAVERKFVSDISNQSNYNKLIARIRELCDLYDRPCVVIEGDRVKNGETRVKCEVRSKYFDRILACLAQTHIKVLFSDGQESTSDILALLAQAEEKKNRAIIYPLPLSKDKEQIVKFLSSIPRTSYITAISLCYHNKTLQEIINSSAEELVKRVKTLSVKRANDILKFLQHGFSADMVNSGNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSZ4</accession>
    <name>A0A6S7FSZ4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">STK11-interacting protein C-terminal PH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030606</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000219">
        <property type="protein sequence ID" value="CAB3979682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSZ4"/>
    <dbReference type="OrthoDB" id="5977487at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057676">
        <property type="entry name" value="PH_S11IP_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25624">
        <property type="entry name" value="PH_S11IP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STK11-interacting protein C-terminal PH" evidence="1">
        <location>
            <begin position="54"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3979682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20940" checksum="815976BD5CAFC691" modified="2020-12-02" version="1">MYVPTAKSAKNDHSLVKTIITNHVCIIQDEGSDVSQDNSMEPTEPTEVNTTIKQYILAQWKDEEKSTPISIIITNTHIALAEENHQWPLPRLHDPPKFLSGPQFVLKKKQKIINITDVKLFTESPCEIEIEFRDEDTPGSIEDDCWLVVLQSENSLKVLLDAIKELWEDKFGIDLPVNICNQMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUH4</accession>
    <name>A0A6S7FUH4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040206</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000408">
        <property type="protein sequence ID" value="CAB3981597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUH4"/>
    <dbReference type="OrthoDB" id="6769832at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="23772" checksum="684860758EC1F286" modified="2020-12-02" version="1">MAIILTVLFSSLSPSKATGPDGIPAYLLKRYSKVIAPSLTVLFELSLQQGVFPSEWKSANVVPIPKKDSLYDIQHGFHCNRSYVTQLLNVFHDLGHALDSGNETDLLYLDFGKAFDSVSHSKLLFKLKSFGIADYLHNLKQCVVIEGVSSFLNIKSGVPQGSVIGPLLFILYVNDLPEVTKNSAVALVADDSYRAIQSPADRDLLQTDLDSMHNIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FW53</accession>
    <name>A0A6S7FW53_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045908</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000283">
        <property type="protein sequence ID" value="CAB3980352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FW53"/>
    <dbReference type="OrthoDB" id="5986462at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="27334" checksum="AFE357C617EB7B83" modified="2020-12-02" version="1">MLLHAADAVQQGDRKILLRMVDTDVLVLAVAVFHHLSSMRPEEQLEVWVAFGTGINLRYIPAHSIACNLGPERSKALPAFHAFTGCDTVSCFAGWGKKTAMEAWKACPEVTSAFLSLSCPLAQITDRNMELLQRFVILMYDRTSNKTKVNHARKALFSKKGKSLDLIPPTLAALYEHMKRTALQAGHCWGQCLVVRPQLPSPEEWGWVLTAGSPSGQPFQMSQSLVESLYDAGATKDVKEGVPVSRLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZE5</accession>
    <name>A0A6S7FZE5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000572">
        <property type="protein sequence ID" value="CAB3983083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZE5"/>
    <dbReference type="OrthoDB" id="6015349at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="371"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="500" mass="57482" checksum="202BA9EF167FDAF9" modified="2020-12-02" version="1">MAFVRFVAVLSVLFWSLYFRSGSKCTENQAQAKSNSFRSDKIDAYNNKFPQYSRICLDDVSAAYKWQWRSLQSLGIVTGITISDVHLDKSLRYDTKIREKILSKRQVWQPEGIKIPIYWQRITTHGYVYKRKWLNNRVSYYSNSSATFNTAVMSIDRSGDVHPHPGPIARTNIDNDHGESNGRIPDWNAFKSLKRRIKCAIRQAETDYFNKEILSNKNCRGAIWKTIRRAIPKSSSQQLTYTKDTVSLSNQFNVFFTCVGQQAATSSRKLAVEHGLQASESVLPVPYPEDELFYFRPVTCEEVNKVILSMPNNKAPGYDKVPVKVIKNCRPEISDTVTTLINLSFESNTFPREWKKAVVIPHLKEGDHEEADNNRPISLLPVLSKIAERLALIQFTEYLVQKQRLTNHQSENRKLHSTETISLLITDHIFRAMDEKKISAMVLIDLSKAFDRICHERLLQRLQNVGASSSSVDWFQSYLSDRYQVTRIGQSTSTPLLVKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G001</accession>
    <name>A0A6S7G001_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000961">
        <property type="protein sequence ID" value="CAB3986084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G001"/>
    <dbReference type="OrthoDB" id="5984710at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="476" mass="55250" checksum="D0AFD7A339DC64B7" modified="2020-12-02" version="1">MVDYHPALSALYGIFRELQHIPVSIPLKLTPEVWSEIPVLKRDTLPNNMDGNMVYELSFDHNRMASSKDEWRWQRYMSSTRSGFKGIRRLARCSGSYKCTNSLCSFHKQGRPNLTHFDKASACKFCGNSADFVPCSASKVWEFNDCCQSDYHHGYHTCPVIVKPDEKAVWDDIDCLTERLIDPYLPKNVKQKVRKELHPEGHSFEAVQLLKTKLDKKDPLYIFDMNDSRFHSDRPTFVFSTSQEKMLLALKMKRNSKFPLEKEYYHFDGKHGRVRGMKTLTASVFHPLLGKMVRLAVMHCKYEDSTNVALFWQLFNKALQAASQNPMTTFQPYGYMMDEGGAEWARLQRECGEQEVEVAKSCQFHYRQAVNREARKLNSSTSKFEFKKIANTMLIANSPSAYDKVYGKMVAFIKEKPTKRSFFKSWIDWWDERKQHVLNAFCSLPFARTTNLSECLHSSWETTREGKAVAESRVLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G005</accession>
    <name>A0A6S7G005_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A018275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000201">
        <property type="protein sequence ID" value="CAB3979471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G005"/>
    <dbReference type="OrthoDB" id="8041546at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3979471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="239" mass="26891" checksum="9139C80B4A41539E" modified="2020-12-02" version="1">MAQQDILLGSAVVRHDLIYEVPVVAMNNSDAPIKLYKGTTIGQLTAVQVESEREVTTRQAPVRTGPVNVDPVAVDLNNSCLTSQQKCQVINLLRDYRDVFANTDSEVGRTDRTKFKINTGTNLPVALKLRRTPLALRPEVDWQIKNMEERGVICKSSSSWSSPIPLVPQKDETYRFCADTLNDVTKTEIFPLPSIRECLDSLCGSIMFSTLDLHSGYWQIEIDHKDRHKTAFTTESGHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G1X6</accession>
    <name>A0A6S7G1X6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">mitogen-activated protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A009515</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.24"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.24"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.24" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020000245">
        <property type="protein sequence ID" value="CAB3979971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G1X6"/>
    <dbReference type="OrthoDB" id="192887at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004707">
        <property type="term" value="F:MAP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd07852">
        <property type="entry name" value="STKc_MAPK15-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000238">
        <property type="entry name" value="Mitogen-activated protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000166">
        <property type="entry name" value="Mitogen-activated protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003527">
        <property type="entry name" value="MAP_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050117">
        <property type="entry name" value="MAPK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24055">
        <property type="entry name" value="MITOGEN-ACTIVATED PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01351">
        <property type="entry name" value="MAPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="13"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="308"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="350"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="308"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="363"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="380"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="398"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="475"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="536"/>
            <end position="549"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3979971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="549" mass="61609" checksum="FBBF825C4BF056A9" modified="2020-12-02" version="1">MSADIEGHITEKYEIKKRLGKGAYGIVWKAVDRKTGEVVAVKKIFDAFRNQTDAQRTFREIYFLQEFGDHENIIKLLNVIKASNDKDIYLVFEYMDTDLHNVIRKGNILKDIHKRYVMYQLCKATHYLHSGNVIHRDQKPSNVLLDTECFLKICDFGLARSLSSVTLESGDPSLTDYVATRWYRAPEILLASPKYTKGVDMWSLGCILGEILLGKPLFPGTSTLNQIERIMAVIPPPSRQDIDSIQSSYGSSVIERMLNKPRKSLEDILPTAPIDGLDLLRRLLQFNPDKRPTAEEVLHHPYVSRFHNSDDEPTLDHEVHPPLSDDQQLSVDEYRKKLYEDILEKKSLLRKQRKTENDQTVENGEKSSSEEAGAKADEVPTTTKHSSKYTNGSLQKAWGKEGGEAHHTSSPQKVGFGRTTKSQPASHDKQPRASSVKVYSRKPAVEDDKAFPGASRAVPNRSRPISAQVKHATITRGTTQPQASGQQASGLSVTSARVIPGQRPSSTKAAYKPGRRQINNPAAGKESIKNFTQDHGTIDKSALDNLKRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GD89</accession>
    <name>A0A6S7GD89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine threonine- phosphatase 6 regulatory ankyrin repeat subunit B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A075055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000597">
        <property type="protein sequence ID" value="CAB3983290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GD89"/>
    <dbReference type="OrthoDB" id="10252328at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051059">
        <property type="term" value="F:NF-kappaB binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071356">
        <property type="term" value="P:cellular response to tumor necrosis factor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051070">
        <property type="entry name" value="NF-kappa-B_inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001496">
        <property type="entry name" value="SOCS_box"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46680">
        <property type="entry name" value="NF-KAPPA-B INHIBITOR ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46680:SF3">
        <property type="entry name" value="NF-KAPPA-B INHIBITOR CACTUS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50225">
        <property type="entry name" value="SOCS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3983290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="29843" checksum="A8664B0F4C4189B2" modified="2020-12-02" version="1">MPTKENCHKKVRFDLTDQSLECQLRFAAKYGSLHKINQLVRVQHADINAPNYNCHTPLIISILNNQIESVRLLCKFGADVNYTADKIHGYCPLHFAAEQDNGDIIKLLIEYGALLNAQTFTGCTPLHLSAMNGNLDATRWLCLNGVNVNISEFYNGYTPLHYAMVRGHKNIVRLLQEFNATLNDQHFQSHSLLTMCHKALWRYLYNTKTEPKILEHMCLHVIRKNFLQQNAYKNASRLPLPRCLIEKILLEEYTKLCES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDV6</accession>
    <name>A0A6S7GDV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079654</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001085">
        <property type="protein sequence ID" value="CAB3986876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDV6"/>
    <dbReference type="OrthoDB" id="5989324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="863" mass="92906" checksum="8F9544D79A2FF01B" modified="2020-12-02" version="1">MKKFNEQQFLQDLGTQTWEHVYFFADNPDTMWEIWKQLFLQVLDKHAPIQNKKTKSKKNPWITSHIKKLIIARDNLKRKAIITKLETDWDNYKKARNETNNLLRQTKKEYYSNKIATEKQDPKAAWKTINTLLGKQNQRTKVNELNLNGIKLTSPDEISEGFNTFFSNIGPNLAEEISTPGCHSKDFLDKTNSEFTAFQSVTVSHVCLLLRELSGSKATGLDKISSKIIKIAAPLISDSLTYIFNQAITLCTFPHEWKIARVIPLFKNGKRNLPGNYRPISVLKKAFDTVDHEILLQKLKLVGITGSAFLLLKSYLTGRTQRCEVNGSISGENDVKCGVPQGSILGPLFFLLYINDLPACLSKTKPRLFADDTNITAAGECLSDLEDAVNSDLEMLRKWLMANKLSLNVAKTEFQIIGTKQMLKKASVQQLKIHIQNIPIKQVFQCKTLGVTVDENLCWKSNTDNICKKISSGIYALKSIKEYVDQKTLVSVTFSVTVVAFSVNLNAEVGVVLEASVTVVYPELIGVVDVVLRAEVGVAAVFVTKVDVVVVSAPAIDVVFVPAVDAVVVVFGAEVAIVAVFVVEVSVVVIFTPEVAVTAVLAADIGIVVVVVFGPEVAVAVFIAELGVVVILSPEAGVPVVLAADVGNVFVVAVFVAEFGVVVMFAAEIGVSVVVVVVVVVVVVVVLGAEISVVAVFVAKLGVVVMFDPEVGVNVVLAADVGVRVVVLAAEIAVVTAFIAELGVVIMFAPEVGVTVVLAADVGVLVIFEVGVADVVVFGGEVAGVAVFVAELGVVVIFAPEFGVNVVLSADVPVVVDVVFGTEVGVVAVFAVSPVIVVIVFAAEVRAVVVFAAKGGVTVEVCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GET1</accession>
    <name>A0A6S7GET1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020022</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001249">
        <property type="protein sequence ID" value="CAB3987902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GET1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="13941" checksum="1868CD8A0F0A4289" modified="2020-12-02" version="1">MEESKRLEEKRLFLIDCFEKQNRHINEIKDKLLSEKNWEILCRRVEMEKKGFEFRLDLENDERENTRALRKVFGPDRYLEDGGYDEIEILICPNEIDNTEDEVENYINYGTLVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GG07</accession>
    <name>A0A6S7GG07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A018707</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000693">
        <property type="protein sequence ID" value="CAB3984071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GG07"/>
    <dbReference type="OrthoDB" id="10020990at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027805">
        <property type="entry name" value="Transposase_HTH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF133">
        <property type="entry name" value="SI:CH211-262I1.5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13613">
        <property type="entry name" value="HTH_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase Helix-turn-helix" evidence="4">
        <location>
            <begin position="217"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="DDE Tnp4" evidence="3">
        <location>
            <begin position="297"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3984071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="338" mass="39099" checksum="A127DE243B8C4D75" modified="2020-12-02" version="1">MPLGGQRIRLKPGSVPTKFIFTVKKPERKKPCYRETSTSTGARTRRKVVRKFNFDSNIENLETVSDAKSEQLVCSEGNPDLLESDDPVESNSNENELLTRELKLKEEEMSRLHEELQRKDREYNANIMELEALLNRKSNAINKLELPNRQKLFNVETVKNNNKLFRCYTGFENFEIFSMVLDFLGREAASHLDYRNNSNSTSDSRKYYMYKPGPSRTLSVENEFFMVLCRLKVGLLEDDFASRFGLGQSVVSQIINTWIRFMFFRFKELDVFPSKEVVKLHMPECFMKKYPSTSLIIDATEIYIEKPNNPVAQQLTFSSYKNTNTLKALTGIVPKGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GH52</accession>
    <name>A0A6S7GH52_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transcobalamin-like C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A001567</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001812">
        <property type="protein sequence ID" value="CAB3991248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GH52"/>
    <dbReference type="OrthoDB" id="5969136at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051588">
        <property type="entry name" value="Cobalamin_Transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027954">
        <property type="entry name" value="Transcobalamin-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10559:SF18">
        <property type="entry name" value="TRANSCOBALAMIN II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10559">
        <property type="entry name" value="TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14478">
        <property type="entry name" value="DUF4430"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcobalamin-like C-terminal" evidence="2">
        <location>
            <begin position="84"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="Transcobalamin-like C-terminal" evidence="2">
        <location>
            <begin position="222"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3991248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="39744" checksum="1508E5D44C2EA984" modified="2020-12-02" version="1">MSIANDIDQPRHKRSDEGIRENHSRTTFQLINAKKAIFYDNFHAACSEVDLEISVTVQLSFVEYSNSIKEDIIPAVDIATASNGTTAFEILTLAAKQNPCYRFQYKTFSFGRYITQICCVSENTTTQYHWFININDGPSPVGVDELKPSHGDIIRFEYRYINYNASNHHEKVIGDQSKTGFNQTDVEDTKPEVSVSVGLSFADHPSPNVIPFHEVDAASNTTAFELLQLAAKLNPCYNYRYKQFSFGRYITTICCVEQNTTSGFYWFVYINGKRSSVGVDLLKPKDGDTLTFQYEQWKLQNTNDTTLSATYSTMNAPVTTPRSTPTGKSAKTFSLWFNLYLLSAVAILSLQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GIC0</accession>
    <name>A0A6S7GIC0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001381">
        <property type="protein sequence ID" value="CAB3988786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GIC0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="21784" checksum="D6ED6750EC36F4C7" modified="2020-12-02" version="1">MASVLEASKKCTFKADTSAKATVRRSQLTLKEGELNRAVDYCKENNCRGYKAISNGICPNIKDARTINARLDGKVITGKEKEYCSILTDTEEEMLIKYIIGKSRAYQPQNRSEVSSMAVKLLKVRQHVNKKLQGGRRYKKLTSPAQLCIERNKLPQSFWTRFDAKVGNRLSRKREQYTSIQRAISCTEAIGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0H3</accession>
    <name>A0A6S7H0H3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Sodium-coupled neutral amino acid transporter 9 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">PACLA_8A083296</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="16">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Late endosome membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Lysosome membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the amino acid/polyamine transporter 2 family. SLC38A9 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002791">
        <property type="protein sequence ID" value="CAB3996072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0H3"/>
    <dbReference type="OrthoDB" id="294730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031902">
        <property type="term" value="C:late endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015179">
        <property type="term" value="F:L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950:SF244">
        <property type="entry name" value="NEUTRAL AMINO ACID TRANSPORTER 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0967">Endosome</keyword>
    <keyword evidence="12" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="13" id="KW-0458">Lysosome</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0915">Sodium</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="15">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00038442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CAB3996072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13232" checksum="CE6ADDB9F401E2CE" modified="2020-12-02" version="1">MLGTSLLTMPWAISQAGFACGIILMIFIGGLSFYTTKQIVNFASHYSSKDRETLEFSDICRTYLGRWGDWAAFAFSLCAIFGALIVFYVLMSNFLYNTGRFIHGEYAILFRQFQKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H497</accession>
    <name>A0A6S7H497_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066938</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003106">
        <property type="protein sequence ID" value="CAB3997469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H497"/>
    <dbReference type="OrthoDB" id="4097129at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="19282" checksum="1CAC13E4571A9724" modified="2020-12-02" version="1">MFSFLTANNFIEQKIQKGFTSNLSGTLEHTAQMTNIINQARIKQRSVVIILLGLKNAFGEVHHNLIQSVLDYHHIPKQINEIIKSLYTDFKTTIITAEFSTPFITVGRGVLQGDCLSPLLFKMCLNTFIQHIKADKYRQFGFMTKFLNPIHWFQFADDAAVISGQESEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HAA9</accession>
    <name>A0A6S7HAA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036178</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002174">
        <property type="protein sequence ID" value="CAB3993057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HAA9"/>
    <dbReference type="OrthoDB" id="5950457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="187" mass="20361" checksum="B8A697804AFBE3DA" modified="2020-12-02" version="1">MSVMGSGPSAMPKHCPQGFSQHLAVIDEDCEINYCTKTNFLSSQGLPVIKRPPFHRKPSRNSAIMFPLMIENNDTNKVYIRHEADNGNWIELTASMSMKMPLRKSEPTQGAVENLKLKMEGLEEIKSSQSAGDSSKDSGLSGGATAGITIGVTLGVGILVIALFALRRRRNTSVNADRSGYQTFQNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFK8</accession>
    <name>A0A6S7HFK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A031097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004220">
        <property type="protein sequence ID" value="CAB4001973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFK8"/>
    <dbReference type="OrthoDB" id="5947836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="479" mass="54255" checksum="911B43248C5BA3FF" modified="2020-12-02" version="1">MTKLFNYVIQNGVFPRDWKVAKVIPLHKKGPKNLLDNYRPISILPAISKAFESILYEQLHGYLSNASILSKCQFGFRRYHSTTTALLDSTNQWYSNMDKGLLNIVAFLDLKKAFDTIDHEILIEKLNMYGVKRHSLGLLESYITNRSQKCFINGTLSHSKPIKCGIPQGSILGLLFFLVYINDLPNCLKYCTPRMFADDTTLTVCGKSTHKISSALNHDLNNVNDWLMANKLCLNLSKTEYMLIGSRHSINNLVDNPCISVDGKLLNRVIVTESLGIHIDQFLSWDFYIEKLTKKISSGIGAISRLKPFVCRNTLISVYNALVQTYFDYCCEVWDPIGSVLSDKLQTLQNRAARIIMGYPNEHGCSEAALTALGWKTLKERRFESKARLMYKIIHGFAPTALTEIFSSASVVRSHDYNLRNSDMKLNLPFPKTEYLKKSISFNGVKLWNDLPIEVRNAESLGIFNSLLCATSLSRSTSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJA3</accession>
    <name>A0A6S7HJA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A057936</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004711">
        <property type="protein sequence ID" value="CAB4003737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJA3"/>
    <dbReference type="OrthoDB" id="10041188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027974">
        <property type="entry name" value="DUF4470"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024119">
        <property type="entry name" value="TF_DEAF-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10237:SF1">
        <property type="entry name" value="DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10237">
        <property type="entry name" value="DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG SUPPRESSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14737">
        <property type="entry name" value="DUF4470"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4003737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="550" mass="63594" checksum="36AF8F2A9034039B" modified="2020-12-02" version="1">MPKFSECWRCGNTVDAGIICELCGVAKYCSEKCQRNDVFRHEAECIPASILKTCKTCRKSGPNLKACTGCYQAFYCDAICQKNNWKRHKIDCEDVKETIKTLAQDILRELSPCCKYYYWGNTPAFDCLNLVENEGEDYSSALNVLFLVVGDLRNVALTCASLPDTYSNKLLFTINDKASCVLARLVVFLYMLIKGDSDIEKMITELWYSVSLSEETYKYLTNTLEELINIRSSEDLKLGTSGMIKIKEKHFKKFQDVWKKWLHLRVQGTDWIKKQRFEIMRKCEPTHYVNESFIKSIPKQHVSSAKKWKEDGAFRRTAMSMPAFAENPTLTGYDETSCDDSFSYAIQSESLPFFGWDYVQTKKLKNSSCLVTMFGDYIECILRSFKKKLSKQQISFQVVLCDCMDFKQHLETNTLYDRILTSNLMDYIILPSLLKLCSEVLNHSSTHALIITETLLWTDEFCPTDMSQAFKMKMLKVAKADVNHYPYSQNDHPASIQEYIDDSCDFYNYLRALFYAYRSREGMVTECNTSKRLKIPILKELGNSIIITQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HN41</accession>
    <name>A0A6S7HN41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A042053</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005486">
        <property type="protein sequence ID" value="CAB4006346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HN41"/>
    <dbReference type="OrthoDB" id="10641011at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="433"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="84"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="267"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="505"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="84"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="531"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="554"/>
            <end position="566"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4006346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="585" mass="63612" checksum="DA861CB01BA1EDF7" modified="2020-12-02" version="1">MSTTNPPNKTNFKYSTSALLQPTSSKLPSTSSYTVRNIRAAFSSYSHTPTKSSEMFISSTSVVSSFVFTTSSNFSFPTTLTSSTFHKVSNSSSTDSLTSSSRRSNSVPATSSINSSTAELSNTTSHFSLPSAMFSTYQGVHSSSTHLLSSPMEGNVTLTIHSSTLISSSPPRSSSFSSSTLFPSTLTLFSTSMVVTKTIGNTTITPSSRELSADHLSSFTKEIPSTSSVSAMFSTSQGVLSSSTNLLSSPMEGNSNLTIHSSTLIASPSPRSSSMTFVRPTPSQKQTLPTKSSEAKISSSTITKMAPSSAANVLNYIFLTFDGKLIVSPKSSYKAEDINFKELAGSIESILDKALQQVNEYIYSKILIIKPRDDESKFVCTFKVFLTKPSSETAATLQEKINKYNETNGFGEFTLHSVETSDASNQPCTEERLYMWAIIVIAALGVLCLLFLAAFIYAQRKLKKSRKGNHSSPNHAKNSDKRYSDFFPPVFDGNAESKNVPLQLTSVSSTESKKPLKFSDTVDTDSEQDDENGKKSDKSFSGEDEKEDNMLDVQEQSQSGNAKLQIQDTDDEDDQTKFSTFSRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNW8</accession>
    <name>A0A6S7HNW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A059733</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003067">
        <property type="protein sequence ID" value="CAB3997300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNW8"/>
    <dbReference type="OrthoDB" id="5988181at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.20">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014720">
        <property type="entry name" value="dsRBD_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46031">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46031:SF37">
        <property type="entry name" value="DRBM DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00035">
        <property type="entry name" value="dsrm"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00358">
        <property type="entry name" value="DSRM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54768">
        <property type="entry name" value="dsRNA-binding domain-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50137">
        <property type="entry name" value="DS_RBD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="449"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="577"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="51"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="3">
        <location>
            <begin position="111"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="3">
        <location>
            <begin position="186"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="3">
        <location>
            <begin position="230"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="240"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="3">
        <location>
            <begin position="295"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="455"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="592"/>
            <end position="601"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3997300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="670" mass="70856" checksum="43697BEFB76527CA" modified="2020-12-02" version="1">MPSSYGNDNTYGGHYATFNSGYDQPAPTYHSTGSYGAIGEPVKPAGIVPGQFSSPPQESNWQGYDNYGGNTQQYGMDNGYNTQMGYNEYSTQSNYQQDSVPPSYGFANNSGGTGGYRGRGGIQQGRGGFDGTDGYSRGGRGAGRGRGRGQYGGEGQIEGDNMGSGGGASGRGNRGRGRGQFESGNRGRGQFDGGNRGQFGGENRGRGGSRGRGYVSGENVSGGQFDKGRGQGYGGNRGRGKFEGGNRGRGDGVNRGRGRSDGGNRGRGQFGSTRGRGWVPEGSQGLGQDAPRGRGQVGARGRGGARGNGQTGIRGRGQDGGRGQRGGARGRGQYDATRGNGQASRGRGRGNGGISVLPGIKTIKPFKMSTADAQGFISYKNNLQEYAQKNHKPIPQYTCQKADIGYTATVSVDGKMFSCLQSQREKKDAEQCAAFQALKDLGYINPNDMFSPKLGTEKEKNKKRPSKDGDSAEPSAKVAKQEEAAPGPQLQSYKSKLNETVMKMRLDLPTYSTVRAAGGFLSTLVLNGQAYQGVNFFGTKKLAEQHVAEIVFNQLDSIKAETAIADDHVVLESPNAVLSTSDSEKEPSAIPSSPPKPPSAPKPKATKNIVQEYCQKNGMQIPIYNTIKDSGMFIATVTVNGVEYVGTPHIMKKTAEQNAAKKVCEQLGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HS91</accession>
    <name>A0A6S7HS91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005986">
        <property type="protein sequence ID" value="CAB4007996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HS91"/>
    <dbReference type="OrthoDB" id="5983457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17297" checksum="78F55FB08F4948BC" modified="2020-12-02" version="1">MAPPSAAQLTKSQVQQMRDWRIKYGESVPQNTVQNRSTKDNPDTLPINLYALAQPASEPLEFSKITENGTQTDTHHANTHNILHSTGDVVFLASYANCGPMMIYHLQENVSVSTKKARATIFEGDPFNPLIFTEEGVVKVNAKEIPGSQVETVCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I464</accession>
    <name>A0A6S7I464_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066492</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007122">
        <property type="protein sequence ID" value="CAB4011363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I464"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="170" mass="19892" checksum="B5D86D0503BD3DDD" modified="2020-12-02" version="1">MAINAKKTKDMWISFTDAIPEPPRLRIGNELIEMVNAFKLLGVSFQNNLKWNAHVEEITRKANKRLYHLRECRKSQLPAEVGIITYQSKIRPILEYASPVWAGLPNYLRDEIERVQSRSLRILGLEKDYLPPLNERREEATSREVDRFMNDPNHPCRSVLPKLINNRKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4A8</accession>
    <name>A0A6S7I4A8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tripartite motif-containing 45-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A078642</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004029">
        <property type="protein sequence ID" value="CAB4001212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4A8"/>
    <dbReference type="OrthoDB" id="342730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047153">
        <property type="entry name" value="TRIM45/56/19-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000315">
        <property type="entry name" value="Znf_B-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018957">
        <property type="entry name" value="Znf_C3HC4_RING-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462">
        <property type="entry name" value="BONUS, ISOFORM C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR25462:SF296">
        <property type="entry name" value="MEIOTIC P26, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00643">
        <property type="entry name" value="zf-B_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00097">
        <property type="entry name" value="zf-C3HC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00336">
        <property type="entry name" value="BBOX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57845">
        <property type="entry name" value="B-box zinc-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50119">
        <property type="entry name" value="ZF_BBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="556"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="232"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="557"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="5">
        <location>
            <begin position="569"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="580"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4001212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="580" mass="65552" checksum="788CEF3601F9E2A2" modified="2020-12-02" version="1" fragment="single">MARALETDRINQLEENLQCTVCLQVLKDPRTLPCCHSFCKVCLERIVQTCRGKAPHDQLKRRFPCPKCRAMFVLEPTKHVADMPKNHFICNMVKVAAVLDRGISVPCSHNCSYSVARCVTCEKFLCRKCLTAHNKYRANNGHSVLTMEVLSKPENRKKIIDKMYCNEHSGMILKVYCETCDQLICRDCMDFKHFKQGHSCVLVKDVANNYKELLASNNKGMEDALTEGNAFLQRLTLTTQQLNRDAQNAKNKIAQRKAFVAKKVIEMLNQKAESLCKKVDEIHKAKRANLDRQAEETKLYVENIKTSFQLSKKLVDQGTEEEIISSQKMMLDNANNLLTKREEYFKAPIPVAKLSYTSCAGREPINEEILSGLANSLGEVNEGNQDRGQAGNEKRAKKILLKQSSVISSPAIDQPEQTKQLDESLTIILLLLRYIMAYHYEVFQNLESVCKEISFSEVKLKHERNMKLTPREDVDPNKFSKAVDTFIDSYYRQYQKMLQQVIPMLPKDKMDVLSEARDKFSVVIDSAQNPDKITIYGEKDNVQGALKFLENKVGNLTTSTPSSSSKSKGGTGGSSSGGAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6T0</accession>
    <name>A0A6S7I6T0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083173</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004249">
        <property type="protein sequence ID" value="CAB4002072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6T0"/>
    <dbReference type="OrthoDB" id="10399470at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="212" mass="23944" checksum="75006CF3CA119580" modified="2020-12-02" version="1">MMAELTNSSCSSLTNSSCSSLWVRTACYLAVLYNIAVFAANFILYVNDRSSWQDDSNTEWVCWQWVDLAISGVSILAALLLYCALITGNHRLLQVFLSWTVFCIVLSILVLGFGFRELERGHILARCIGIVVSAYFADVVFSYYLKLKESGQVASRESQNRQSYTLEPIPPGYPGQSDMVNGGFYIEDETSNTELQNNNIRNVCLWYEDTKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I771</accession>
    <name>A0A6S7I771_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028326</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007917">
        <property type="protein sequence ID" value="CAB4013536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I771"/>
    <dbReference type="OrthoDB" id="5977502at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="360" mass="40345" checksum="E520CFD3F592C008" modified="2020-12-02" version="1">MKGTFEKGYLPNFSKEIFTISKQIPRDPRVYKLKDLDGEELKGTFYEKELKKVIKEDDVNASSDIFPDNKTTSYRVNLPQAISLSGEWEVGLNSINYPRTWYTLGNNFDTHMYTSDQSGLFSATIIDYGFYETMPELVKSVNKTLAKDVTDNVKLTFNVRTEKVTVHLKNKHQLVVTNKMSIVLGFGGKETKIVKTTTSPYAADLHGFMAIYVYCDIVQPQIVGNTSAKLLRSIPVQGKLGDVITKTFTNIQYVPVQTKSFEDAEIVLRNDTGDPVPFERGKPLASRLWSPDGLWNRGSFRTVVRAMMPMVKSGTKALGNIALKSDADFVGDVLAARNVKKAAKARTMEAANVVKRKEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IHC8</accession>
    <name>A0A6S7IHC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Kinesin light chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005154">
        <property type="protein sequence ID" value="CAB4005292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IHC8"/>
    <dbReference type="OrthoDB" id="5987302at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008782">
        <property type="term" value="F:adenosylhomocysteine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008930">
        <property type="term" value="F:methylthioadenosine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019284">
        <property type="term" value="P:L-methionine salvage from S-adenosylmethionine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="entry name" value="Nucleoside phosphorylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46832">
        <property type="entry name" value="5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46832:SF1">
        <property type="entry name" value="5'-METHYLTHIOADENOSINE_S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="Purine and uridine phosphorylases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nucleoside phosphorylase" evidence="1">
        <location>
            <begin position="279"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="567" mass="63967" checksum="0CE7F764C84C1A9D" modified="2020-12-02" version="1">MSMQPYSDEELNYFKFASIVLKEFPDALRSIFVDMWDTRVAPSSTVWDDSPLLRNILHNNEAPNTKIPTNNSFKEWDCTALFQATLYARTFALPDSTGKKKTLGEIYLKRRKPVPAPFHSAVRSSSGDANETIALAVDQLRLLRNTLCHTSSPQINKVTFDNYVRHAKDAFTALNFSPISLERIGNLKESDFPTKEVEKLNKEIKRQRNDSYLFLESEVKHEMSEMKYEMSEVKQKLNSIEGVLTQTKDATDQCAATSDSEFKYFNDVLLLTVDNTEFNEAQKILNNDEIPSKKDESDKNCCFGKIGRNKVTLLKVPYFGKTAASSSHDLLVYETIQELKPKAIVSLGVCDGVRKEAHFLGDVVVSSQVYFLEQQDDDLSNFDGTTYDCNLGLVHLFHRGKFAWVGPCENVVVPKVYVGQFTTGLQDDDDENRDSHKAGTIGIDTASKSVHATCRNSGVPWLSCKSIARWANDKCQDSTWCQFGAAVSASYVQHVLKRFYIPDEVQVFDKSVPKPCLPPMVPHFIGRQQECEEILRALTSTSARLVTVSGPPWFWQNFIGNCSRTPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IN27</accession>
    <name>A0A6S7IN27_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076039</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011020">
        <property type="protein sequence ID" value="CAB4020565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IN27"/>
    <dbReference type="OrthoDB" id="6761011at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF454">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="28869" checksum="935D888E2F9E1561" modified="2020-12-02" version="1" fragment="single">MCTDYRKVNNLTKSDNFPIPRMDDCVDKIGNAKYVSMFDLLKGLWQTPLSERAKEVSAFVTPRGLYQYKVMPFGMRNFPATFQHLINRIISQIDGCEGYIDDVIIFYNDTWEEHQEILRKFFKRLSEAKLTINLVKSDFSFQVFYYKYFPLQPPLNKNLHADFGHSYRGNQGLRRSPSAVVLLQLCEHRIGVNLHYEGRRSARNGTEYTSFENRHVRDCLSLLARKIISSFPVTAFLNEIIYVLQPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQM7</accession>
    <name>A0A6S7IQM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002012</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010689">
        <property type="protein sequence ID" value="CAB4019923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQM7"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="34442" checksum="AEA49A5E02946B2B" modified="2020-12-02" version="1" fragment="single">MAHHKGQRISKEVQNFKHFNERLFLEDLSSIPWEYANNFNDPNDSWFVWKSLFLEVLDRHAPILRKYIRTKRIPWITASIKQLMRERDFNKAMFNKCNSELHWEKFKTIRNKINAEIKKLKANYYNTKISECLLNKNIKKSWSLINNLLGKDSKSTIINEIRSDNNVFTDKVSIANQLNDYFVSIGPSLAIEIEKNERSFQRSENRDSNDWLDTTFRFSVISDEQVLNNLKQLVVSKSTGIDKIPARVLKISADIIAPSLTKIFNLSLRTGIFVTDWKLARVHGQCINLMTEVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRM2</accession>
    <name>A0A6S7IRM2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089682</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011719">
        <property type="protein sequence ID" value="CAB4021935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRM2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="97" mass="10932" checksum="4F2149397F50CF36" modified="2020-12-02" version="1" fragment="single">DYNEKCVQQKIENSFEGISDSGNKTLASDTTAAPSSKMYKSCKEMFNHNSSLPSERYELKLDDQSEKYSVYCRMEPLDNAECQGGGWTLVMKTAVDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IX71</accession>
    <name>A0A6S7IX71_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Acetylserotonin O-methyltransferase</fullName>
            <ecNumber evidence="5">2.1.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Hydroxyindole O-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A076171</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of a methyl group onto N-acetylserotonin, producing melatonin (N-acetyl-5-methoxytryptamine).</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.4" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020011957">
        <property type="protein sequence ID" value="CAB4022406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IX71"/>
    <dbReference type="OrthoDB" id="10267058at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017096">
        <property type="term" value="F:acetylserotonin O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000358">
        <property type="entry name" value="Acetylserotonin O-methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016461">
        <property type="entry name" value="COMT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001077">
        <property type="entry name" value="COMT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012967">
        <property type="entry name" value="COMT_dimerisation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43712:SF2">
        <property type="entry name" value="O-METHYLTRANSFERASE CICE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43712">
        <property type="entry name" value="PUTATIVE (AFU_ORTHOLOGUE AFUA_4G14580)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08100">
        <property type="entry name" value="Dimerisation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00891">
        <property type="entry name" value="Methyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005739">
        <property type="entry name" value="O-mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51683">
        <property type="entry name" value="SAM_OMT_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="O-methyltransferase dimerisation" evidence="9">
        <location>
            <begin position="54"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="O-methyltransferase C-terminal" evidence="8">
        <location>
            <begin position="158"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00037645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00039116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00040730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00043054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4022406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="336" mass="37110" checksum="67BE7E94D8BEFA98" modified="2020-12-02" version="1">MSLVNAILTNLPKNDNFSAQDESLGHAQSQNEEAQVPLSFFNKNGASFPMKLAELMVLHRATKALATACNIGVFDYLDSDETAKSATEIAEHCKASVNGMTRLLQACVSLDLLRSVVTEGVQRFELTQDSKRHLTMKSPEALRGEIACIDMEYNLTGNLEHAVREGTTQWPRTLGLPEGGNLFDFVYSNEMFTLQFLAGMHGVSNVASPILVRGIDLSGYTKACDLGGGTGAFAYHAVAQYPQMTMSILELPPVVKASPHFTPPNLPMSQRSRVQFIPGDFFKDDLPQAELYVMGRILHNWGEDLCDILLEKAYKALPPGKMIAFKVIELYLYRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXH0</accession>
    <name>A0A6S7IXH0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015581</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012017">
        <property type="protein sequence ID" value="CAB4022516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXH0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="51" mass="5870" checksum="A51B996C7A11AFA6" modified="2020-12-02" version="1" fragment="single">SGKPYINVYGNLERHDSRHSSYDHFSDSEQQLPEPEVPTGRSHPVDMDNDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IXN6</accession>
    <name>A0A6S7IXN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012906">
        <property type="protein sequence ID" value="CAB4024225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IXN6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="91" mass="10198" checksum="3649D4272B7FE51F" modified="2020-12-02" version="1">MTGEHEDKERGEWRRNRHGMIGESIGNERGIDGKRVGNRWGIRMGLTGNKWGMSRESMGKRIGNRQEMSGGINGGITGECPENKREIVEGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IYM3</accession>
    <name>A0A6S7IYM3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TNF receptor-associated factor 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A088291</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012321">
        <property type="protein sequence ID" value="CAB4023107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IYM3"/>
    <dbReference type="OrthoDB" id="5972186at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF94">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4023107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12696" checksum="051A0E698C47B0C5" modified="2020-12-02" version="1" fragment="single">TNGRTCPIDNQELKENELYPDNFAKREINQFTVKCRTVKHKKECPWTGPLQNIEEHLKICEFVEVPCPKGCNQNVERNVLEHHLKKACSKRTITCQNCKTEVQHKNYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J051</accession>
    <name>A0A6S7J051_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008800</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006938">
        <property type="protein sequence ID" value="CAB4010872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J051"/>
    <dbReference type="OrthoDB" id="410381at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="689" mass="79918" checksum="1653297C9F435143" modified="2020-12-02" version="1">MSDELEDFSFNKPDVTASSWLNHFESLHTKHLIGPEQINILQTLKTLEMEPTNNLLDEPISEYEIINAARKLKNNKSAYSDKIRNEMLKYSTNILLQGYKKLFNLILETGSFPDQWCEGLITPIFKSGDKTNPNNYRGICVTSCFSKFFCIILNDRLSNFSYQQSLIHPSQIGFQSGHRTADHIFTLKTLIDKQVEQNKGKIYACFVDFKKAFDSIWHEGLFLKLLENKIDGQFYSLIKSIYSNSKCAIKQNNIRTDFFTYSKGVRQGCILSPLLFNIYINEITTLFKNTNSDPFILPNGTELSCLLYADDLIILSKSKFGLQKCLDKLHSWSKKWLMEEYCYLGIKLNHNGNFSLAIKQLSEKALHALYSIRRRLNLHQLNPKSAIKIFDSIICPILLYNAEVWGVYIKNDFINWDKLPVEKVHLKFCKLYLGVGRKTSNIASRSELGKYPLIINVFKRIFKYVTHLNSLPETTISKQAFLISKDLFIKKSNSFYGKAMDIVKTLNCNRAIPDLDSLTTNLVESCVKDTKENYQRFWRHKLENSSKLTFYTSIKEDYELETYLTTITNSNQRKHLTQLRLSNHKLMIELGRYENIPREDRICKVCQAGEIETEHHFLTSCEAYSSLRENFLNNLESDPTNETDLNEHSLSVEIMKSTDKETVIKLSKFISLCFEKRSKYLEARNADSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J2C0</accession>
    <name>A0A6S7J2C0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transposon Ty3-I Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A082645</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007190">
        <property type="protein sequence ID" value="CAB4011562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J2C0"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000023">
        <property type="entry name" value="Pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="199"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4011562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="810" mass="91030" checksum="8660270C482C07DF" modified="2020-12-02" version="1">MADDTIGNMSQVSNIPIPEKFDGGNGPKQGDLWPKWIRRFERYRIASGLNNKSDAEQVSTLLYAMGECADDILKTLQIDEDKASYEEVKSALENHFSDRRNVLVERARFNRRVQRTGEPVDTFIQDLYKIAADCEYGTLKNELIRDRIIVGVVDDSLSDRLQSKPKLTLQEAVQIARQAEERKHNRDVVRGDATKSSDVYYVRNGAQTKGRYHKQNPRSQETKGPHTPPKKSGDKCNWCGHERHDRKVCPARSVTCNKCKKKGHYQAVCQSKPSFSKSVNEVNKSLGEDQVLFLGEINGESNDSWTAQIGVNGHNTKLNGHNTKFKLDTGASVCVLSDSVPWLEGITLEKPQQTLRGPGGSKLKVMGTFMATMKYRQSKVQELVYVIRNQPCSLLSKKVCVQLGLVKLNDVGEVIQSPPDFRKEFPGLFEGLGKLKTEHHITLCDDATPFCLYNPRKVPHPLIPKVEAELQSMLKQNVISPVTVPTEWCSGMVCVPKPNGKVRICVDLTQLNKAVKREIHPMPSVDESLSKLGQGKVFSKLDANSGFWQVPLDEQSRLLTTFITPFGRFCFNRLPFGICSAPEIFQRTMSGILKGLDGTICQMDDVLIGGKDQVQHDERVRAALRRVQDAGLTLNEKCEFSKESIKFLAHVIDDLGIHIDPDKTTAIAKFPTPKNVTELQRFLGMVNHVGKFVPRLADLNEPLRQLLHKDAVWRWEIAHQTAFLRIKEVLMSSEVLARYDPRKETIVAADASAIGVGAVLIQIQEDGDRRPVYYASRTLSETEKRYAVIEKEALAATWACERFSDYITGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5S8</accession>
    <name>A0A6S7J5S8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013535">
        <property type="protein sequence ID" value="CAB4025311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5S8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="67" mass="8252" checksum="A1726299229898B9" modified="2020-12-02" version="1" fragment="single">MKVRYGSRCLKLKLADNLQKSKTKLVKLRNRLKFLRRCRDNGFIPRRLRIKLSKDEIQVRNVYWKVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J778</accession>
    <name>A0A6S7J778_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Receptor-type tyrosine- phosphatase F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A023810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015066">
        <property type="protein sequence ID" value="CAB4027856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J778"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07679">
        <property type="entry name" value="I-set"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="90"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="187"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4027856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="22325" checksum="BF91B56D848F245D" modified="2020-12-02" version="1">MSSGDMKAKEGDLVNLLCSAQSELPINFSWKKYQKPMESFMEKEKPHRSSLLVVTVKDQASFGKYICHIRDQFQSTTHTISIQKDTGEKYLAGIIVLAILLVISFVIIAYFIYQNRRRKSSKANPENKSKDRNNSRDIYENPDNDDANYEQVENEESTYTALKRPGPGEEENDNHLYAHLNEGHTDSGPSSGNSSGGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J809</accession>
    <name>A0A6S7J809_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014357">
        <property type="protein sequence ID" value="CAB4026698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J809"/>
    <dbReference type="OrthoDB" id="10249365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016651">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.740:FF:000021">
        <property type="entry name" value="NADH:ubiquinone oxidoreductase core subunit S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015405">
        <property type="entry name" value="NDUFS1-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050123">
        <property type="entry name" value="Prok_molybdopt-oxidoreductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43105:SF13">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43105">
        <property type="entry name" value="RESPIRATORY NITRATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09326">
        <property type="entry name" value="NADH_dhqG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53706">
        <property type="entry name" value="Formate dehydrogenase/DMSO reductase, domains 1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00034078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4026698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="26753" checksum="808E799FA45E0321" modified="2020-12-02" version="1">MVIVGSSILQRADGASIYDLVFSLANKLKASQQVPSDWRTLNIMHRMASQVAALDIGYKPRLDLPSSLKFLYLLGADIGTVNKENLPKDCFIVYQGHHGDYGAHMADVILPGAAYTEKTATYVNTEGRAQQTRRAVSPPGLARDDWKIIRALSEICGDPLPYDTLNDIRSRMTEIAPNLTRYGDVEEANYFSLTKELLKGSKPSDKALLPFISNLEDFYMTDPISRASLTMAKCSKAVKTMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JDD8</accession>
    <name>A0A6S7JDD8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022728</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006669">
        <property type="protein sequence ID" value="CAB4010078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JDD8"/>
    <dbReference type="OrthoDB" id="5981348at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="458" mass="52575" checksum="518F345EEFFF1C97" modified="2020-12-02" version="1">MRPHYTKLALFSILLVTFVFVCWNIFLSYDTTILPVLQESVNAYGNVLLNNFAARHDDTITSSIQRAQQNPISISLFIRMSTKRKHLIRFYCNMLKTVVLFWPPSLGKMVIVLDQESEGDHRFAAQLGNQTREHFPSYIFDVRYEPLPRDGTVLDFPGKRNPPGYNRQLWSSFFIDLYTNDDIIAWLDTDSPFLLPVTMPTIMPNGKVKILGSTCTKDPSWVKSWAAVTEKAIGFPMVADFMTYFPAYIYRDTFTRCREHILKRFDTDNFEEAFKKFYHTGTGYICPVCVVISYAWYFEKDRYNWNIQTCGDVNTSNNGLPSGHKIQPEHVKDVLTQPQTAYHGPLKADDFYAKAIPITFCLSQAAAGRKPAMCEKHPSSEINYLLNLFKADMHSIRKNIPHPCTGNFTKSCLDILERHIEKIGGEIKTNSRRIEWEDFEKVDTLARVAGVTCPAHPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEB7</accession>
    <name>A0A6S7JEB7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Zinc finger MYM-type 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A056259</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015462">
        <property type="protein sequence ID" value="CAB4028404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEB7"/>
    <dbReference type="OrthoDB" id="5970457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042838">
        <property type="entry name" value="KIAA1958"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021893">
        <property type="entry name" value="ZMYM2-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963:SF2">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46963">
        <property type="entry name" value="SIMILAR TO RIKEN CDNA E130308A19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12012">
        <property type="entry name" value="DUF3504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0832">Ubl conjugation</keyword>
    <feature type="domain" description="ZMYM2-like/QRICH1 C-terminal" evidence="6">
        <location>
            <begin position="136"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="412"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="412"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4028404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="444" mass="50123" checksum="5F572116835B867B" modified="2020-12-02" version="1">MASRFVDAGSVDDFILEQENKSTAQKTQRDVKLLQLFLVNKNEERNIEDIPIGELNEYMSDFIISVRTKNGKEYEPSSLRSLLASFERHLKRKNYPASIINDLAFEKTRKTLESKQKQLKKQGKGNKPNASVALTTSELNTLYEKDLLGTRSPESLLNTLWLNNTMHFGLRGCKEHRDMCWGDVKLKQTADGEEFLEFNERQTKTRTGSDCRDVRKMAPKMFATDGSERDPVVVYKLYERKRPGKMNEDDSPFYLAVNNTLKKESLQTKEWFKAAPVGINKLNSLMKTMAQKAGINNERLRNHSGRKTMIQTLSENDIPPTHIAQLSGHKNLKSLESYSKVSSKQEMQMSKVLSGYTSGSAAKTSSDKTVNSPPTCSPISEAQQAMALFSGAVIKGGNFSININTVNQSPKLTLEQEPSQNSAKDEALSKWKRLKPLEDSDDEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLH1</accession>
    <name>A0A6S7JLH1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043096</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007312">
        <property type="protein sequence ID" value="CAB4011918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLH1"/>
    <dbReference type="OrthoDB" id="6021232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF3">
        <property type="entry name" value="MYCBP-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="462" mass="52724" checksum="13CC25ABB70D8DC0" modified="2020-12-02" version="1" fragment="single">MESEEESRYWEVHQELARRLDFAYTLMKMHQCDVDLLPGWTGFNMLLQGSNIPPLSKIRYLPIIDGSPSEYSTLLGDFHTTMSFLGAIGVLFRDAGLQDVLVESDIIGQGSVDGVMKGKRYNRSMHCHKVMSEVLQRLRFEAFLDCLDDEDSDQVVAVATGMLNNFQTDFFHEEINGESFLDIKETYQKFIEEESKENPTFAFWSSYLEIIQTLLCFVRAIREGDWDLHLSAMRSMLPWFFATDRVNYSRYGTAYWLEMTTLDDTHPGVINITLNRGAMQCWILTQSERSAISRECMKMAGADPCNSKRKDLDETQKAHHEKEVENVKTTLQNMVNPFEPGRTELVHLTSGLVATENVSTDPLKANHIGEERLESFITDRLFVPEPDIFATIPKVKLKTFSSMTKKVKVSSKSGADATLKSNRNLFARMLLLAQSREIDMKEVLSFCLGPFPLSLLTEMGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVW4</accession>
    <name>A0A6S7JVW4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Mab-21-like nucleotidyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A038870</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021424">
        <property type="protein sequence ID" value="CAB4035847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVW4"/>
    <dbReference type="OrthoDB" id="5988859at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1410.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046903">
        <property type="entry name" value="Mab-21-like_nuc_Trfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656">
        <property type="entry name" value="CELL FATE DETERMINING PROTEIN MAB21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10656:SF69">
        <property type="entry name" value="MAB-21-LIKE HHH_H2TH-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03281">
        <property type="entry name" value="Mab-21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mab-21-like nucleotidyltransferase" evidence="2">
        <location>
            <begin position="101"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="377" mass="43265" checksum="F378ABA9D17FEA52" modified="2020-12-02" version="1">MWIPAVGLRTGADYLTKNIGKFYGINIDNIPYVIQDALKEKLKSVPQIIIPETHFDSYFDAEPPFQLGEALLTGSLSEGLFLYYPQLPDMDFMCVLKNITLSQEDQATGCLLLREDTPSVYAFITSKEIQNLWSEFLDDTDNQVGKHRLSSKKLKEKLQENYQKNDSLLFPIVRNCKEELEEVTEGAAATVNKSKPDISFGHCMTDSAKAAFLLPLNKQVDVRMKFKQIKENLVHSIFYKMISSSDIVLSIFCEGWPPVAREWVTRERFWPDIYSDEKITQGGFHIVPKSSPDGDFRLSFSCAEIMLIKTLSPLQHKVMRAFKAVVKYHENSWGPNLKEILSSYYLKTIAFWHFEKTLQESWTEETLVHHLVALLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K2G0</accession>
    <name>A0A6S7K2G0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A006461</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022398">
        <property type="protein sequence ID" value="CAB4036774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K2G0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4036774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="723" mass="83599" checksum="FB76CD20FA827B87" modified="2020-12-02" version="1">MASSLPPFPPFNVEDDTTATGQRWIKWKKRFENVLLAMDIDDETCKRALLLHYAGSPPFDIFETLTDTGDEKDYKKAMDRLTEHFTPQRNVDYETYLFRQARQQPNEILDQFTTHLRQLASTCEFTSVEEEIKSRPIRIYVYAGKKTEKSSNVPEGLCAILCQKGDDGQWKMCQVANRALTDVETRYGQTELEAAAIKFACADALYKYLVGAPKFEIFTDCKPLKGAENIADYGSRHLSRRHDDVPMVKSVNELEEGLRTFVSEDNEYLSRMAKDDNDYQFLKEVIQRNLWKKHGKDPRVSRFLGVASDLSVVGEIILCKDKVIPPLSSRRRFVEKAHKIGHSGETRTLKLLQEKIWFPGIAKLCKEAVQNCQSCQVTHDRTYDEPLQSTPLPPGPWHTISVDFKGPFKDGTYALVRYDLYSRYPVVSYCRSTAFSCVKPILDSWLSTFRTVKELKSDRGPPFNGHEFSAYARERGFVHKPVKPRYPKGNGEAEKFMQNVKKMERIAKQERKKYRCLIEGMLNAYRATPHPATGKSPFELMFGRKMRLGVLPEISETPERDNHPKVRQNDALYKLKSKRYHDKRRNVRKSRIAVGDKILMKNKRTDPLSPIPGKVINIRGNAVTARFDDGKVFMRDKSHFKIVPERSYVEERERVRGEQTFQDSILNQSRIDQSTRDVLPDQVNRDEADQLMNSHKSSTNDRKQPIYVTRQGREVYLPDRFQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K3V5</accession>
    <name>A0A6S7K3V5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000050</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012043">
        <property type="protein sequence ID" value="CAB4022581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K3V5"/>
    <dbReference type="OrthoDB" id="411173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="216" mass="24990" checksum="BE34BC324AC0B17A" modified="2020-12-02" version="1" fragment="single">SGPDDLPYWFWKEFAFELAPTITNIFNTSLKLSKVPKMWKHANVLPVPKESILNSLNPLRPISLTDIIMRLFERSVFKTEIAHVTRHAIDSDQFAYKEGHNSIMALIKCQHTWLRWLEGDAKYVRVLSFDFRKAFDSVPHDILCEKLKKLPINPYVTNWLISFLEDRKQRVVVDGIETEYLNINRGVPQGTVLGPVLFSIMVNDIKTVNPINQLVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KFH8</accession>
    <name>A0A6S7KFH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A005774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010367">
        <property type="protein sequence ID" value="CAB4019238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KFH8"/>
    <dbReference type="OrthoDB" id="10253954at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12000" checksum="9D193DA17A6F0580" modified="2020-12-02" version="1">MVALKLKDGKKPTSSDSYENSELVTYAEARKLTNSKPYIAAVVTSSGVDGNMFILGDGRNTSNPTSRRRRSTSSDYYNGPLEPGTSYSIFKGLYSIARYGSCWLSHDRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KV87</accession>
    <name>A0A6S7KV87_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc finger 271-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A080174</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017897">
        <property type="protein sequence ID" value="CAB4031783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KV87"/>
    <dbReference type="OrthoDB" id="8117402at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000446">
        <property type="entry name" value="Zinc finger protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24379:SF121">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24379">
        <property type="entry name" value="KRAB AND ZINC FINGER DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4031783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="143" mass="16610" checksum="927BFF36C9C4DA5A" modified="2020-12-02" version="1">MRHRRRHTEEVPYECDVCKERFAKKSSLTHHKKQHLLCNTCSREIVQPQDLNEHFFVFEHDGKCSCSKCDKRCINFMKLVQHIARQHGNDGNYQCGLCQELGSTEPTGVGYVCCVCDVMFVVPRELEDHMATHDTMSAHNEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LD48</accession>
    <name>A0A6S7LD48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086314</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016874">
        <property type="protein sequence ID" value="CAB4030439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LD48"/>
    <dbReference type="OrthoDB" id="6625814at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="38249" checksum="C074EF28996081B1" modified="2020-12-02" version="1" fragment="single">MSADSDDELRACHKVIIPDCDLFEFCQSYREAVATPSIQDECPRSVLKQIVGMEEMKTLAIALARVIAAKPHSTDVERLISIYNILMSPARSGLNTDTFHYYIFIGFNLPPLASYDVRPAIRYWLADKKRKPSASSNGSDGTYLIKSRNSVGYELIPCLSAGTQIPESDCTGSGWTYIGELSSEQSNNNTGYDSAIWTAKGENQINFNSHFWSANVTEVCLTANRFGIQLPVKGPSLRSLFFENITLEIPIQQWIDGIKINISHLNFTNGCFKSGFNVGDPNSVRARLGVVSVVPHAGCSLSVKAIGVGIKVAGKDYGSVHGLYANTNNDISDVSYDDVAVFVRSRPDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LIL9</accession>
    <name>A0A6S7LIL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023293">
        <property type="protein sequence ID" value="CAB4037623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LIL9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="204" mass="22426" checksum="30C4818C35AF5A5B" modified="2020-12-02" version="1" fragment="single">MEETQRIQRSRKGHRARLTKILNKATTIMENDEAPNAMQITSLTATIEQLARKRTVLNELNEKLLAMVKDPDELEQEIMEAEDTECEINEKSAQISAFVLSCNTVKNPVISQVNAFQVITSPLQVNAPQVITSPQQVSAPQVITPSQQDNSPQTIPSQQVSESQPTASSTLEVNPLQTPPLNQEQSVTVNESEGVSSMNTSTNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRU0</accession>
    <name>A0A6S7LRU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016792</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029880">
        <property type="protein sequence ID" value="CAB4042312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRU0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4042312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="248" mass="28329" checksum="D6437DBCC7E62AE1" modified="2020-12-02" version="1" fragment="single">MADGRLFVSSDAELSDVEENTTKNVESKRANNINVVKYLNITEKGKLRLTGSFENLEILMNELLETQTKWSSPGGHCKLLEMDNFEMRWYSNNYSLIIKGEQDEVEEINSRLRIMANLADKETAFVSEGNGDREGDGVNTASTENSHIEINSHETSNYNKVLDSIRDLELCFVNKFDELLQEIRQSKTTEETISEDRNSLIKKNGKLKQEIDILSDQVNNYKCIVSDLHTKVKQLEDEQKSLITAIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LRV2</accession>
    <name>A0A6S7LRV2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057436</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026361">
        <property type="protein sequence ID" value="CAB4040149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LRV2"/>
    <dbReference type="OrthoDB" id="445826at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4040149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9728" checksum="581BFCD45469752A" modified="2020-12-02" version="1" fragment="single">ENLLSTSQHGFRPGHSTVTALLEITDRLYNHNTDTGELNGVVFLDLKKAFDTVNHQILLNKLNCYGITGTAHKWFASYLYPIAHSIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUT7</accession>
    <name>A0A6S7LUT7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084193</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035694">
        <property type="protein sequence ID" value="CAB4044653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUT7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="534"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="534" mass="59986" checksum="8249FA0C82F4429F" modified="2020-12-02" version="1" fragment="single">MEQQPNNPTTVSMAHSVPIRPMPEFNPDAELGASVATRWKNWVADFDMFLLASGVTDPKRQRALLLYQAGTRVREIFKQLPDTGEDKDYDIAKAKLLAHFEPQKNRRYEVYRFRKAVQEPRETLDQFHTRLRTLAQTCEFASPDFELEEQIIIGGASSKIRKRALRDPSFNLAAMLLEGRRDEQSTFQAKDIESTSPDSATSTFDEIDALYRPTGCRNCGGSFPHKGLCHAKGKQCRKCGKLNHFQSVCRSRPIAQPSGSIAQRDSTQNYHSNATQNLIRPLEHYNTGDSDDDYIYGIHSLDKSPRVNVTVDGHSFSTIVDTGATINVIDERTYKTLRGIFLQKTTMKAFAYNSTTPVPFLGKFTATVETRRKITAATFYVAQGSTSGNLLSLSTAQELDLVSLHLNNISKPLPQNPNKDPKLNDILERNAKVIDGLGKLKGQTVHLNIDPNANPKAQPQRRIPYHIRNKVKDAIITLEKDDIIERVPEDEPTPWVSPIVAVPKKDGGVRICVDMRQANEAIKRVRHPIPTVDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DLI1</accession>
    <name>A0A7D9DLI1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SCAN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A057799</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001282">
        <property type="protein sequence ID" value="CAB3988115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DLI1"/>
    <dbReference type="OrthoDB" id="2499658at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057560">
        <property type="entry name" value="Znf_SCAND3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23663">
        <property type="entry name" value="Znf_SCAND3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCAN" evidence="2">
        <location>
            <begin position="167"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="212"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="212"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="245"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3988115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="29756" checksum="4334E1F796E2D597" modified="2020-12-02" version="1">MEIDDHTQVTSQQNNTDNNAATYSTNQLEDGVPEHSKHKNETLSVIEIPEQPDENVIGQENDNPAISALVSMEIDDHTQVTSQQNNTDNNAATYSTNQLEDGVPEHSKHKNETLSVIEIPEQPDENVIEQENDNPAISALVSMEIDDHTQVTNITDNHCHVCFGEVSGAHKCISCLRAVHVFCGVGIGDEGYGQAVKCFKCQDTGHKQYDENVNSSSTSDNLFHLNASGSDPNLEEVSHSSSDEYVPETDDDEGKDSESEDDDEYAFQGTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DVS8</accession>
    <name>A0A7D9DVS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Zinc finger 396</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A055761</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the krueppel C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002452">
        <property type="protein sequence ID" value="CAB3994390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DVS8"/>
    <dbReference type="OrthoDB" id="6077919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:002104">
        <property type="entry name" value="Si:ch211-266d19.4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:001370">
        <property type="entry name" value="Zinc finger protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000185">
        <property type="entry name" value="zinc finger protein 319"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23235">
        <property type="entry name" value="KRUEPPEL-LIKE TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23235:SF120">
        <property type="entry name" value="KRUPPEL-LIKE FACTOR 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00096">
        <property type="entry name" value="zf-C2H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13465">
        <property type="entry name" value="zf-H2C2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <keyword evidence="7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="41"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="65"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="88"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3994390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="21651" checksum="7C713CF3DCB7A07E" modified="2020-12-02" version="1">MTNDVSTTSGGVIIQRRPSVIKAVPKQDETVVDERECDTIAVVGMDEVDDGLKSEQDGSESGEEEGVKTKRKREDSVEGSRKTKRKRVEVLEKNESKEDDDWKPIENKRHMCKECGMRFKKPSALVIHLRTHSGERPYACELCDKRFSISGNLRRHMFTHTGEKPYKCQACGRAFNNPSHLARHSKKIHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E5E2</accession>
    <name>A0A7D9E5E2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006231</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003875">
        <property type="protein sequence ID" value="CAB4000590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E5E2"/>
    <dbReference type="OrthoDB" id="5987979at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="80" mass="9197" checksum="0F716EBA2BA9168C" modified="2020-12-02" version="1" fragment="single">MTRSTSDLLTFGTAFGRYKFKRMPYGIHSASEIFHLEISKIIAGCEGAVNSQDNIIVWNFGEKPRKFMINAWRKSLQKPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E953</accession>
    <name>A0A7D9E953_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032874</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004951">
        <property type="protein sequence ID" value="CAB4004606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E953"/>
    <dbReference type="OrthoDB" id="6608798at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF26">
        <property type="entry name" value="ZINC FINGER MYM-TYPE PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="74"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="368" mass="41407" checksum="7BBBCE24DEFF7145" modified="2020-12-02" version="1">MPMNYSKLGKVPATKNHYVALCEAKDSSSKMVGVQHFVMKQVSPGINVSSTEVRKIMPPTKQTAPPLSSTVGTSSASVPTRSSSSLQPIKKKQTSLDKLFPKKRKFAEESEDEDVPQTTPFPKKRLGSSLVSEHPHSRSETSCFPNDIANYVNVNSLTDEQKYNVLCNVWVPSTNFPFPLVNGRRFRLDWMKLFPWLTYSQKLNGAFCINCVLFGSECTGTHNTSKLQRLCKTPFTTWQVAPTKFREHSERSPLHKAATARAAVFRSHMEQKSAPIDVMLENRKLHRGEQKTSETHHEVNCGNFIEILKYGAICAGKTLEELFKSTSKNMTYKSKTTQNEIIDICGDLITKKITDEIREATKRQIVAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9L8</accession>
    <name>A0A7D9E9L8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030494</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004230">
        <property type="protein sequence ID" value="CAB4002002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9L8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11076" checksum="39514465447B10F7" modified="2020-12-02" version="1" fragment="single">EFRQSETSSTQRVMLDSSMSVIKGNEWLDVTLLTALSVLGCDNVEEKYWLKRFAFSDAVLAVAPSYVNGAWTSPMMENDFVIAPKMLRVTAERVFNFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EEE7</accession>
    <name>A0A7D9EEE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A077521</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005533">
        <property type="protein sequence ID" value="CAB4006537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EEE7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4006537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="499" mass="55141" checksum="91E82457463111BA" modified="2020-12-02" version="1">MADSQELEPSTSTENPSNADRQNKPADRKAYFAKRNASKVCLNTSIERWKRLKEENDIKSDQEFADILLNLYEVSGHHSSIQMRAVETQTNDPDETMESLFGFDMGLIATSTPQNFGNNPSPLLSVPSNMSAVSSRRRLIPDSSPLGSPPRHTHDETLTASEVDSDSDSETLTAHGLSSVHVTQDLDQTYLELPDENDIFNITINGHDGDEIHQEHEDKGTAPHEYVSTVDVVTPEEAIKMEKCIVFTDTLMLLITSLHGSVCKRANCGHPLHYKKTYVGTCLVVSWGCNSGHVGGRWSAQPSCDKIRAGNLILASSLLLSGNLSKKLYIIPAINKFWEQHQKQLWKEKAGKEVVLSGDGRNDSPGHSAQYCTYSLADMDDQAILQMNVVDVREASGKSNNMERIGFERGMDALLTSTIVLKEVVTDGHLEIGALMNLLHTGQEINLLPWISTIIEVEEQQQQLMANQGMDACSASEHSDGAMFVFLHLSNTNTFLNLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EHW1</accession>
    <name>A0A7D9EHW1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A008238</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006486">
        <property type="protein sequence ID" value="CAB4009541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EHW1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4009541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="18976" checksum="AD7096FA0DF6D03C" modified="2020-12-02" version="1">MGAIVVIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVAVAVAVAVAVVAVAVAVAVAVAVVVAVAVAVAVAVAVAVAVVVVVVVVVVVVVVVVVVVVVVGFVVGFVVAVECFWFVVVVVVVVVVAVAVAVAVAVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVGRCYYYYYITLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EI95</accession>
    <name>A0A7D9EI95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006875">
        <property type="protein sequence ID" value="CAB4010707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EI95"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="17451" checksum="2F2CA40255FC2FB4" modified="2020-12-02" version="1">MEASGVKRFTGQGIEKTNDVLRRIYHLKSNKHDVCKDGLLTVKRMDDLQDRERRPRSYTRKNERYWNEEIKEDRRKGKRLSVISKETNQLDVDNLTDEQFGDKLKQLKCKSRIKCPKKPSQLLKDRIYAEENSIGDISIVLTHINDFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELM5</accession>
    <name>A0A7D9ELM5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Mutator-like transposase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030583</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007084">
        <property type="protein sequence ID" value="CAB4011246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELM5"/>
    <dbReference type="OrthoDB" id="5985305at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049012">
        <property type="entry name" value="Mutator_transp_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20700">
        <property type="entry name" value="Mutator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mutator-like transposase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="214" mass="24437" checksum="ACF797ED3E4D393E" modified="2020-12-02" version="1" fragment="single">FRQLIVKVNDEVCSSGILDVAVSFDGIWAKRGFTSLIGVFFVTSLETGEVLDYHVLSKSCQKCLHKKSQCQNNVDAFEEWKREREASGECDMNFTGSSPGMEAEGASVLWNRTLDKHNMRYKWMVCDGDSEQLWCKWQQDLASVTRTYKDDNCLLEAFFEVLKPTFVTLADSKLLERYIRGATQNPNQTLNSMVWIRCPNLSTDIMDSKLFGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EPI7</accession>
    <name>A0A7D9EPI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015041</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007422">
        <property type="protein sequence ID" value="CAB4012200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EPI7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15445" checksum="190B405776BF0FAF" modified="2020-12-02" version="1" fragment="single">HLLKQRKRAIQKSDSKSHARLQDQINKLIRENQLNAVKQENKNQKTGSKQWWSNVNSITGRNNRSRSVSAAFDPSEINVYFQSINSDPQYAAPEPVEIPDGTRVPSLSINTTLHLLQNLKRTASGPDDLPYWISLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HEF4</accession>
    <name>A0A7D9HEF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042028</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000306">
        <property type="protein sequence ID" value="CAB3980607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HEF4"/>
    <dbReference type="OrthoDB" id="10016194at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031747">
        <property type="entry name" value="TMEM232"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28651">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 232"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28651:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 232"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15877">
        <property type="entry name" value="TMEM232"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="415"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="468"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="423"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="475"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="568" mass="64588" checksum="4F8D6309CD488137" modified="2020-12-02" version="1" fragment="single">MPINRVPVVHKFGIISQTQRADLEKRIAKKAYLETRRKLDAQQPPEPRPLPFEVTEDFVYKFNDSGQDERKKLEDTAMKMLKRLKRLAGLRQAGEAYHVDLPRAWVDLALLAQCRSSKLEEACLEALIASLDQALVCEEHVLSLFYLAKSGVHWLKKDAGYQFVLRSNEILLLKMTRLVFIRLYCHYLLDQLKEYEDQRTSLGQYLKGFSEKAKSFNQFPGAYLSVRLISEAGRVICSSVTRSTKEESDENKWITMNTSTHDSMSEEGQKQENIVQKTLRDTEEQVIKVEVREEDEIKHAGLINGLSLPDNVSPSAETGNSIFLQCSLNVWHAVNHDSGLLNDALCDLLESATHLSEEQWLELVLAFHILADASCSNVRVLEVFQYFMSLDFSPVVIPVDRVSHLCENCYSSLPTSPDKKARNSTSFRDNVSKNESIAAGERNTTSSLVETLQEFVGLDLSPEQGTLEDMRKTQDSATHSSQPRRSGQEETIPIDSYSMAARPQRRHPRNRWPWELVYTFCECLTTVCMHGACSDVQKHSLLGMSESTLKKYKSGMKAKCGLIEFLQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HL33</accession>
    <name>A0A7D9HL33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Centromere V-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A072885</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001218">
        <property type="protein sequence ID" value="CAB3987697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HL33"/>
    <dbReference type="OrthoDB" id="2993351at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.150.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052355">
        <property type="entry name" value="CENP-V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28620:SF1">
        <property type="entry name" value="CENP-V_GFA DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28620">
        <property type="entry name" value="CENTROMERE PROTEIN V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04828">
        <property type="entry name" value="GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="Mss4-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3987697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="18048" checksum="CCAD78F787948A30" modified="2020-12-02" version="1">MSSFNLEALTVLVRRNVFKRMSSTEDLVLFHGGCHCGKIRFQVSTTPVVDVYNCNCSICRKKQNLHFVVPDDSFKLLQGEDNLTCYTFNQHKAKHLFCKTCGVQSFYKPRSNPNGYGVMPHCIDEDGPVLETNVKYFDGKNWEKSIVNSDILAKSEKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HLG4</accession>
    <name>A0A7D9HLG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052056</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000735">
        <property type="protein sequence ID" value="CAB3984408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HLG4"/>
    <dbReference type="OrthoDB" id="5983457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="16401" checksum="A69F412F9157220F" modified="2020-12-02" version="1">MAPPSAAQLTKSQVQQMRDWRMKYGQSVPQNTVRNMSTKDNLGTLPINLYALAQPASEPLEFSKITENGTQTDTHHGNTHNILHSTGDVVFLASYANCGRMMIYHLQENKKELSRSMRTKYLVLKWKPFAGDSNLELTENEFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTN6</accession>
    <name>A0A7D9HTN6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068499</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002081">
        <property type="protein sequence ID" value="CAB3992583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTN6"/>
    <dbReference type="OrthoDB" id="8195376at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="116" mass="13752" checksum="777B94EEFA614C4F" modified="2020-12-02" version="1">MDKLRQTPAELQFVPGDGDLSERWKRWIQTVNLYMDVCMKDASEKERCSAFLYIIGQDGRDIHNTFDFETSEVDKIKPLIQKFEDYCIPKQNTTIQRYKFNKRVQGETESVDQYVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTX6</accession>
    <name>A0A7D9HTX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057989</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001663">
        <property type="protein sequence ID" value="CAB3990458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTX6"/>
    <dbReference type="OrthoDB" id="3229882at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="176"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="371" mass="43194" checksum="99D1A4B44FA44A6D" modified="2020-12-02" version="1">MSYQCDVCKELEAREATGIGYICCVCDAEFEIATELEYHMRMHNNVLPHEENRLAKQREKRQQESVAERETRLKQQRETKRLKRQNETVEQRKQRLAKAQLVNYKANKSRCSGKNKPCPPSGSQKHHSNDNSNVRPNKVMQATACLVNTSELYREQGITFDQHWLSYFDVTTPNSDNENTKVDQTNLTSSEDEWSEDEAEIPAGVIDSMLTPTDFVDDTERQHIYTVLHLVKLGPASLFCSFSSAETKWKHLLRILGKLVDHKDYSDEQLDNLNWDEKCRLIQSDPVTCARHFDYQFNTFLKNFLMSEIAPLGNLKDWFYKVEYQQRGSPHIYIVIWLENAPVFGVDKDEDVVNFIDQIITCRKPDNDTEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I111</accession>
    <name>A0A7D9I111_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002595">
        <property type="protein sequence ID" value="CAB3995085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I111"/>
    <dbReference type="OrthoDB" id="8007085at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14789" checksum="64DE4D0C96D4BA6C" modified="2020-12-02" version="1">MEYVYFPLEKALLENFQSYPDSVKDSVDTLEISLNIDGIPLFKSSQSSLWPVLCGIMNLTPVRIFPIALTYGKSKPKNLDFLHDTVRDLNMVLKQGLSCGSKVLKVSLRTLPGFYKRMIFDRSFGRSSNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IDW8</accession>
    <name>A0A7D9IDW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A003665</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004630">
        <property type="protein sequence ID" value="CAB4003438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IDW8"/>
    <dbReference type="OrthoDB" id="10007484at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006928">
        <property type="entry name" value="Herpes_teg_USP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04843">
        <property type="entry name" value="Herpes_teg_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase C76" evidence="2">
        <location>
            <begin position="47"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="DUF6570" evidence="4">
        <location>
            <begin position="563"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="domain" description="Helitron helicase-like" evidence="3">
        <location>
            <begin position="875"/>
            <end position="1000"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="240"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="296"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="240"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="253"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="308"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="331"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="354"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="377"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="408"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="441"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="471"/>
            <end position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4003438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1059" mass="122943" checksum="7CF40A50DD401204" modified="2020-12-02" version="1">MWYTQMVSYDVYVPLLLRLANDVEENPGPINIYDIVDHSFTVRADFNQGNISMFGINAGKQCVAMSIYAIVYNEIKSVNIWDTPLMNMLLVNANNLYAIISQHIQKDFLLLTDVPEILSINNDTFNLEYSDSFSGALWMEYNNEPYVTLEHAFHEVFDAGNYKACLLTIRANTVAVLMPFPDVFKVFDSHSRDMHGMPAAMGYSVLVSIEGIQNLIHFFHNTNSCKGVKCHRNISLSNSLDNTENDTTSNNHEQQRKQQETVVERENRLEKLREKQREKRQQESVVEWENRLAKQRERRKQAKQQETVSERENRLAKRGEKRKQTKQQETITERENRLAKRGEKRKQAKQQESITERENRLAKRGEKRKQAKQQETITERENRLAKRGEKRKQAKQQETITERENRLAKLRQKRKQAKQQETVSERENRLQNQRKARRLKRQNETVEQREQRLAKVRANYKENKSRHSTKNKQSPPSGCQGPNNDNNISHNSVSQLIHKFHKSVSTGPLYICSCCDQLSYKPSVCPAERLRLSNPNSTKHLQGIKSVDNIEWLCLTCDKHLKKGKVPPSAITNGMKFPTKPDFFDLNELECRLIAPRLAFQKIMQAPRGRQLKITGNVVNVPADICNTFNMLPRLPQDTGTIKVQLKRRLQYKSSALSLNVRPNKVMQAAAWLVNTSELYQEQGITFDQHWLSYFDVTTPNSDNENITVVDQTNLTSEDEWSEDEAEIPAGVTDSMLTPTDFVDDTERQHIYNVAPGEGSRPLSIFRDQYSEELAYPGIFLGQKRPDEKHRLTRVHYSEICKSELRRSDRRAAMCIENIFFKTKKMQMKLLLGQSQLAIRKCKMGNRTLTAGELKTPEGLTNLICHDEGYKFLRALRGSPPYFEKAKKDLFAMIRQLGPASLFCSFSSAETKWNHLLRILGKLVDHKDYSDEQLDNLNWDEKCRLIQSDPVTCARHFDYQFNTFLKDFLMSEIAPLGKLKDWFYRVEYQQRGSPHIHMLIWLENAPVFGVDKDEDVVNFIDQIITCRKPDNNDTELFDLVNRQTHGHSHTCRKNSKKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IEK4</accession>
    <name>A0A7D9IEK4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A001003</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004749">
        <property type="protein sequence ID" value="CAB4003876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IEK4"/>
    <dbReference type="OrthoDB" id="2133778at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888:SF13">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46888">
        <property type="entry name" value="ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="127"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="154"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="200"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="229"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="260"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="297"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="343"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="472"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="3">
        <location>
            <begin position="1029"/>
            <end position="1085"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="532"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="586"/>
            <end position="762"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="879"/>
            <end position="977"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1081"/>
            <end position="1189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="586"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="609"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="662"/>
            <end position="678"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="693"/>
            <end position="707"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="719"/>
            <end position="756"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="881"/>
            <end position="905"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="919"/>
            <end position="929"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1128"/>
            <end position="1156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1168"/>
            <end position="1182"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4003876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1189" mass="132059" checksum="F8A1DF31A481E048" modified="2020-12-02" version="1" fragment="single">MMEFSRQRSRDTAASFRGTLFKTIKSVLLTPVVLASIFGIAANKIFNEELPRGLDEPLETLSNAFGAAALFYLGLSVVGKIRTKVGMIIMVPLSLGVAKVVILPLIIRGLCTSFNVGGDKMQEDWSTFGFLYGTIPPAPPTVIYAAAFGIQEDMVAFGLVMSTMFSAPVMFSSSKMSTVRNMNSTNIEYRNLLADTRNDISFVAIAIACWVIMVLFLSRRYKSPPHSYTICLVLSQLLLCFSFVLTKSDSFINCCKGLEVFLVTTFLFATHCWTALLAFALASLRCSGSERPSRNKLAMYIIGWGLPACFSGIVVLILKSDFEDYSTSEKDFFHFFNEKKTYLAFWVTFQFISIPVCVGYLVRLYRSDRFCKCEIMTNHEDKSEEETLLLSKSISGKCHRCKDANNCATPIETRSVANHTRQSTDVEDLDAIYSLVNYTDQNSDREKLGYQNSKLGLDKYYEGEQHQIGRHVIVIVSQVLLMIVCIFYCMWILVGDAENSGIFLEVQLLVSIILSAQILVVFAAFERERNLPRERPKDSRTTPPQSAPAGKAREILSQPPAEPPANHDTVKELIPNGYELVPEAHRQKPRNTEKTDHKTHAQPAQVKEQLSDRRRPPEKTKKEHKNLRELTPTEEPKRRANPEVRTPTNEQKPDSFTAAARPADDPAPTHKTTPEKKPQPNNSDNRHTPARKYPHDNRGKHDPRAPRDTTNPSRRRPPQNFQPNKTNPQNQTKPTGTVPTPDNNTTSAPDSNNASDTQEDPTKVKANADPIMKVFEPFVNAASVSPLNNPTQRTPVQVLRDTGASQSLILTNTPPPSAESYSGNNVLIKGVHSSDYSSVPLHNIRLHPDPGDVSIGTIDTPPLDGIQLLLGNDLAGEKATANPTATKKPCSTSISDATEQETPNLYPSCAVTRAMVKQQEPENNKRDDLDSSYDLSDTFPTQPPDSGPKTTQNTKNDATDTKSPPTPNPTHEQNNDPEIAILIQQAFDEKEISDQAMGHPIKNDILMRKWRPPDVSVDDERPARHQTAIPKPHREEVLRPAHETPLSGHPGINKTYEKITRHFYWPGVRKTVAEFRKTCHTRQAAGKPNQLTPKAPLKPIPASEEPPSRTTTDRAGPLPKTKRGKQHPPTTTRAPTRSPEATPPRNTKAKTTAEAPTKPPTPAGPPKSIQSDQGPNPTSGLFQQIMHEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IH16</accession>
    <name>A0A7D9IH16_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Multidrug resistance-associated 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A008124</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005318">
        <property type="protein sequence ID" value="CAB4005803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IH16"/>
    <dbReference type="OrthoDB" id="5987170at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF456">
        <property type="entry name" value="MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4005803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="29957" checksum="411D53A285A1666C" modified="2020-12-02" version="1" fragment="single">MFRTILRAPIYFFDTNPVGRVLNRFSKDLGLMDDMLPLAFFDAFQLTVFGLAILLISVLSQPYIAVVVVPIIGVFVWLRQYFVKSSREIKRIEALSRSPLYSHISATLQGLATIRASEEQNQFHEMYNKYQDCNTSASYYYLAANRWLGYRLDIICAILMTFVAFAPFIAYETGLVRKEQITFQETNLRILQGCPRHWCCWHHLIPCIERTSNAKTLQRNEGYKGLTIKRIGDKPEQPRTCGARLFGQLVLSFYQMVSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJ24</accession>
    <name>A0A7D9IJ24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A002357</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005748">
        <property type="protein sequence ID" value="CAB4007276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJ24"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4007276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="54" mass="5867" checksum="304B8B5DBBFBE788" modified="2020-12-02" version="1">MGDTIIAIGGNSENERHQSVAVKTVEYLVLGENTWKKLPPMHCERSGATACLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJA7</accession>
    <name>A0A7D9IJA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004543</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006061">
        <property type="protein sequence ID" value="CAB4008225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJA7"/>
    <dbReference type="OrthoDB" id="188035at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4008225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="18730" checksum="F0C48AAEEFA0744D" modified="2020-12-02" version="1">MFWVKISQATAKGDLQKFSPWMVVAVTALGTAVITSFLVFTFIFASLLRLPKKSILAVTVLSSARNSSIAIAVIENLPDSVGDKDLMFFPIIFVYLAMVVIINSFGYFMTIKKEENDIEQDKDTLEDKVDSADKLTLVENSSVEQITSYNIPNTLNCITLSTVQWCTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IL74</accession>
    <name>A0A7D9IL74_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ubiquitinyl hydrolase 1</fullName>
            <ecNumber evidence="3">3.4.19.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A030904</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9 10">
            <text>Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).</text>
            <dbReference type="EC" id="3.4.19.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase C19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.12" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020006469">
        <property type="protein sequence ID" value="CAB4009495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020006469">
        <property type="protein sequence ID" value="CAB4009496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IL74"/>
    <dbReference type="OrthoDB" id="27652at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050164">
        <property type="entry name" value="Peptidase_C19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001394">
        <property type="entry name" value="Peptidase_C19_UCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028889">
        <property type="entry name" value="USP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018200">
        <property type="entry name" value="USP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006:SF733">
        <property type="entry name" value="RE52890P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00443">
        <property type="entry name" value="UCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00973">
        <property type="entry name" value="USP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50235">
        <property type="entry name" value="USP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="USP" evidence="6">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4009496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14692" checksum="25382E633F8D9FCE" modified="2020-12-02" version="1">MRVKKLPKILALHLKRFKYMEHLHRYTKLSYRVVFPLELRLFNTSDDACNPHRLYDLVAVVVHCGSGPNRGHYISIVKSHDFWLLFDDDLVEKIEPQTFEEFYGLTIGGHKSSDSGYILFYESKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ILG3</accession>
    <name>A0A7D9ILG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Angiopoietin-related 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000341</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007158">
        <property type="protein sequence ID" value="CAB4011467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ILG3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57414">
        <property type="entry name" value="Hairpin loop containing domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="148"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="167"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="262" mass="29821" checksum="F30CBBBCF6513783" modified="2020-12-02" version="1" fragment="single">MHWGIMNMLNQFKSLALYLHFCTSGKYSVLLLLFWLLHIIKCQGINAADFCFDGNREDHRLNFPHILKRLQAKSRIECILLCFNEDVCCRSINYKKNSLSVEKGNCELLHVTPAEEPGLLEEHPGYDHYVLLQPNRDSTKLNCPDLPCLNGGRCVGGCGNKSSFCNCSRSYAGKYCDKICVDALRFRGNNIIEYGIFVRPSQPLNYFSACSWIKTTEDSDKAILSYAYEFDGTEVSNGLLIFLNPYLRIYFKPVGADPIIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPK2</accession>
    <name>A0A7D9IPK2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A083524</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006949">
        <property type="protein sequence ID" value="CAB4010902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPK2"/>
    <dbReference type="OrthoDB" id="5983646at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="280"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="205"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="698" mass="79693" checksum="1C8B442B122C5C24" modified="2020-12-02" version="1">MWAYLDTGSARNFVSRDAAKMLNLKPKRHEPREIVTLNGITNQSMPIYEIVINALDGGAREKIEVTGSKLPDFTTVRRPHIPELKLKHEHTKDKTFYYTENRKCQIHLIIGDNTFSRIRTETVCKGEQGDPIVEETSFGWVIHGGDDYTDDQCMFTRETSDCERLYSLDVLGVEDTGDTNSEILNEFTEKITRKEDGRYEVSFPWISGKRPSDTNEQQSRKRLQNVDRKLDKNPELKREYNNIISEQLSQGVVEVALDTPTGDRVYYMPHKPVVRQNATTTKVRMIFDASAKPNASAESINDCMYTGPPLQPHLWDILVRARLMQNLILADIQKAFLQIEVKEEDRDSFRFLYNVNGMEKHLRFTRVPFGAEASPFVLGATLQHHLGNQSPEHQDTVDALKKNTYVDNLIYGGEDLSSLVKFKDESSRILESGKFPVQKWESNVEFLESNDMPNHTKFLGHMWDKREETLEITVPDYPEGDPVTKRSILSHLGSMYDPLGIISPTLAEGKRIYRNVCDEKKCWNAEVSPQSKYQWLKWTKQLRNVKVPRSINKSIKRMKAVQLHVFADSSTLACCSVAIAVVESNTGVVKGLLASKSRISKRDTSIPRLELVSGHMAANMARNLCNALRGWPIKSVIIWMDSLVALFWINNPGKAWKVFVANRVKQMADITEEVNIVWKYCPTNMNLADLRSRSASID</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IS08</accession>
    <name>A0A7D9IS08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075053</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007335">
        <property type="protein sequence ID" value="CAB4011985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IS08"/>
    <dbReference type="OrthoDB" id="1930928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22758">
        <property type="entry name" value="OTU_232R-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003323">
        <property type="entry name" value="OTU_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050704">
        <property type="entry name" value="Peptidase_C85-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12419">
        <property type="entry name" value="OTU DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12419:SF11">
        <property type="entry name" value="OTU DOMAIN-CONTAINING PROTEIN DDB_G0284757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02338">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50802">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="719" mass="82767" checksum="4E235D785E812622" modified="2020-12-02" version="1">MGKRVTLDDIPPELKDLRPLELRLISQRIPFMKLVGLPRGGQKAIHGSAVNVLCKLQQVTSLLPRLPNSAEVVAVKLKRKLAYKGHYMYECVRLKRVMDALRWLQENNQLYNDINVCEDWETYWQEDDADLWNAMTRACEEQSIVDQAIENSDTATGSLNECHPEDITNNLKIKDVPGDGNCFFHAVSFCLRAAGIQVISGPDIRAALIQYFQTTDEKRHYMVFLEFDDTTFTNSLSTEEQQLQEFEVYVNRLRNGEWADNLAVQGVVDMLNVNVRVINTITPNWIHQIQPRQQTTDNTITLGQMGELHYVALENVEETIRNESRFEEATNQIEDEEDIIAYEQTSKLRGIPYDTLLQDEQQLVNDDSTYSIAPEENQTPCAFLMDEKFEELANPSKYPYGRGGLSTKRQRKITARKYFNQRLLHKDGRFASDIDYLLAAQYTVEAKQVRDDMQITLRQTRGQSFQNRTVNAGLVKSSDNLQAMIRTDTAFKFLKNVRGSPAYWKTVLLDLLAMVRQLGMPTWFLTLSAADMQWPEVIQSIAHQYGKVLTADDVKNLPWLEKCKWLRSNPVTASRQFKHRLDQFFKEFIGGKANPIGELQDYMIRIEFQARGSPHAHTILWIKDAPELDVNTDEEVISFIDKYQTCVIPDEENTDLRNLVLSLQKHVHSSTCRKRGSCRFRFPHPPSGKTLIARPPDESDPTILQNVLKTNQEVLRKVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J4F3</accession>
    <name>A0A7D9J4F3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053924</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011577">
        <property type="protein sequence ID" value="CAB4021703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J4F3"/>
    <dbReference type="OrthoDB" id="6148142at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="22958" checksum="3BB05849051FF8E4" modified="2020-12-02" version="1" fragment="single">MSPDCYICSQCARDTKSPRKFSRENAMIPSPVPTELQNLTQVEEMLIARALPIMRVYIKLGGQRGYLDHCVNLPQNVKELATSLPRYPRDLSVIIVKGKDNSFRDVAVTREKVHNALLWLFQHNPHYAELEINEDALNFLPENGIPTDIMTVETENEIISNDDVMSDLGPPTENPSEDIVYNNSTDMNSFLPVGEQQEQEIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J6J5</accession>
    <name>A0A7D9J6J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063952</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012245">
        <property type="protein sequence ID" value="CAB4022967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J6J5"/>
    <dbReference type="OrthoDB" id="10058156at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30439" checksum="3060E917F2102029" modified="2020-12-02" version="1" fragment="single">MNAISNAGITLNPDKCTFGVPEIGFWGLRIGSDGVRPDPAKVEALDHMTPPQSKEELTSFLCMMQSNSDFIPNFAQLAAKLRELTKKHARFVWNTEYQTAYEVLIARFKQNTLLQYFEMSTQTFLFTDAHQTGLGAMLAQGDSIENARPVAIASRTTNAAEQRYPQIDLEALAIDFALRRFRQYIVGSPTKIQVITDHQPLCSIFNGKRQGSIRTERIKLRHQDIRFTVTYQRGKINQSDYLSRHAKPIEKLTREERQEADDLNNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPD4</accession>
    <name>A0A7D9JPD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019692">
        <property type="protein sequence ID" value="CAB4033954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPD4"/>
    <dbReference type="OrthoDB" id="10025386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="16658" checksum="CE2581B9B8824C4D" modified="2020-12-02" version="1" fragment="single">LMLKNIIKDAPRMTSKWPPTANEIRNEGVEKFVPYQLFNLIAVCIGATEEPSLTFYADVDDDTRNKILSIGQDIIYLASKGKKQTPKSLSLGLTIRHLTGSSQQGVYKIGRRNASNSRETCMMQIRTGASGEGAKFKSKQTIDAKLEDTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPP4</accession>
    <name>A0A7D9JPP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019845">
        <property type="protein sequence ID" value="CAB4034127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPP4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="19299" checksum="F311B4A82C387B79" modified="2020-12-02" version="1">MRLFRFELVETFLLAGIEISKIYIMRPFLEKYARHRLTGASHMKDIIPSVLEKEREKIKAEIQNVQEVPMIFDGTARLGEALAIVIRYVQENFKPTQRLICLEVPAKPLKGSELAQRLMSCLAVNHNFGPNMVLATMRDGAAVNGAAIRQLSFFYPNIFLCYLFFSYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JQ99</accession>
    <name>A0A7D9JQ99_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004902</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020083">
        <property type="protein sequence ID" value="CAB4034407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JQ99"/>
    <dbReference type="OrthoDB" id="5982747at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="325"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="339"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="370"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="394"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="492" mass="55568" checksum="5EA8A62AADB3E0C0" modified="2020-12-02" version="1" fragment="single">MTPNIDVINTKVDGVYVVEYRRLEDLKLFVETTLQIEGTWSSPGGYLKAFSEDPESVLIRYYTDTKSLLFQGDRGKKIKNFLIGKIASISQPGGDKHSSRSSEQNSTSIHDDSIVLVNSPSQTLSERHDEDEYALNLSEFESVNTISVDTSSQTYEIESTEYHSTRASRECNCACSQSSKDIEILKSTITKLQSSIDSFEIILKDHDSVLSMYNRAADMNDKYLKEINESKQHIVYLEQKLLETSQERDSLQLATRLIAQDKYCHHHTRQNEVAETAARKNDNVWQKVHNTNNNGVYHNKQTKQLTRTDIGTANRFELLINEDGNNSCCEPEQEHNHKSSQARNTQSTHDPSDHSQLDSNDDQSAQHVRSPQQTSTSSSLSKQTPNRGLNGKQGGKRHNGDRKNQKSGHSSRKVTIVGDSMLKNLKGYRMSKENKVKISTFPGSTTRDMYDYIKPVLRKKPDQVIIHVGTNSLRESESPTSCAEEIVELAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JU65</accession>
    <name>A0A7D9JU65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086953</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021615">
        <property type="protein sequence ID" value="CAB4036013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JU65"/>
    <dbReference type="OrthoDB" id="6431014at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11525" checksum="8A30B309CB275D5D" modified="2020-12-02" version="1" fragment="single">MSEEKAILARFRAVRGGNRAVITKLINETRTIFEDEQPNRGRLTTITDLLKEKTRLVKDLDEKIINSCEVSDIANEIEEADELNSRILDVQREIKELLND</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JV48</accession>
    <name>A0A7D9JV48_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080119</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021244">
        <property type="protein sequence ID" value="CAB4035648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JV48"/>
    <dbReference type="OrthoDB" id="6772952at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="221"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="28202" checksum="5B80EEFB98233541" modified="2020-12-02" version="1" fragment="single">MVHAIRKSTDCTRYKRQERKRALLLYYIGESTLNIFETLPETGTEDDYDEACQALNEHFKPRKNTSFEIFKFRKTNHLVDETLDQYHVRLVQKAKYCEFSNLDTEIKAQIELGTNSKQLRRYAFRKPKLTLAELLDYGQTLETVEEDASGIEQNMNETPMKDIHAVRRNPAATTPKKICFFCGLSWPHVNVCPAKGKTCNHCHKQNHFARCCKSKISAGQRENKLPQKSNERRSQVKQIDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JYF8</accession>
    <name>A0A7D9JYF8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">Branchpoint-bridging protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">PACLA_8A082008</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="18">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16">Necessary for the ATP-dependent first step of spliceosome assembly. Binds to the intron branch point sequence (BPS) 5'-UACUAAC-3' of the pre-mRNA. May act as transcription repressor.</text>
    </comment>
    <comment type="function">
        <text evidence="17">Necessary for the splicing of pre-mRNA. Has a role in the recognition of the branch site (5'-UACUAAC-3'), the pyrimidine tract and the 3'-splice site at the 3'-end of introns.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 17">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 17">Belongs to the BBP/SF1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023004">
        <property type="protein sequence ID" value="CAB4037373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JYF8"/>
    <dbReference type="OrthoDB" id="10021397at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045131">
        <property type="term" value="F:pre-mRNA branch point binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048024">
        <property type="term" value="P:regulation of mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22382">
        <property type="entry name" value="KH-I_SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1370.10:FF:000016">
        <property type="entry name" value="Putative splicing factor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="entry name" value="K Homology domain, type 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045071">
        <property type="entry name" value="BBP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055256">
        <property type="entry name" value="KH_1_KHDC4/BBP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11208">
        <property type="entry name" value="RNA-BINDING PROTEIN RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11208:SF45">
        <property type="entry name" value="SPLICING FACTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22675">
        <property type="entry name" value="KH-I_KHDC4-BBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50084">
        <property type="entry name" value="KH_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0007">Acetylation</keyword>
    <keyword evidence="6 17" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 17" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="14 17" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="15 17" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0678">Repressor</keyword>
    <keyword evidence="10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 17" id="KW-0747">Spliceosome</keyword>
    <keyword evidence="13" id="KW-0804">Transcription</keyword>
    <keyword evidence="12" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="9 17" id="KW-0862">Zinc</keyword>
    <keyword evidence="8 17" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00055181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU367126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CAB4037373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="22187" checksum="0EE27C669CCC29DA" modified="2020-12-02" version="1">MVPPATRIQEKVFIPQDDHPHVNFIGLLIGPRGNTLKKTEKDTNCKIMIRGKGSVKDGKGRKDGQLLPGEDEILHALITGQNHESVKKCVDLIKTIIKQGVDAPEGENSLKKLQLRELAALNGTLRDEEIVRCRNCGSSEHKHWECPEQPNFTATLTCTKCGSSGHIAMDCTVTQQEITNILSAPPIQDSAKMDSEVGQNDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KC36</accession>
    <name>A0A7D9KC36_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022883</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034105">
        <property type="protein sequence ID" value="CAB4044151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KC36"/>
    <dbReference type="OrthoDB" id="7763192at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="144" mass="15844" checksum="5CF7DB2212F76ADF" modified="2020-12-02" version="1" fragment="single">SYLTNRTQMCSVNGALSSTKLVTCGIPQGSILGPLLFLIYINDLPNSLEYSSTRMFADDTTLTVSDKSIQDVEVSINHELTNVKQWLSANRLSLNLVKTEYLLIGSRDNINNLLGAPNDFVGDTPIKKVEEAKALGVHIDEFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KHA4</accession>
    <name>A0A7D9KHA4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052843</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034976">
        <property type="protein sequence ID" value="CAB4044444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KHA4"/>
    <dbReference type="OrthoDB" id="425619at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="313" mass="35571" checksum="0495E859ED4750CC" modified="2020-12-02" version="1">MTTVEELTGIVKGLADVVKSQLTNQHDAQEANRQHIEALAKTVADLATNSPSSSHVDTLKLPQVVLPRYTGKPDEQLDRFLDQLTTLLKSSGVPAKHWTTYLKQQVQQDLRAYDFVVFAEEECKHALGEDPANITIEQYETYFNLVKASLVKKRGKPKDERIRELLQVYYNLQQSKAEPVSTFAHRFCDIQHELEKCIPGIHYTGTNDDIELRHAFLIKLRPEIGKALMSRDAKYSSLSEVIEAANRFEQSFPPLPLLSAEYVDPFREDKAMLKPKSCYNCNQPGHFKRNCPALYNPGTNQERKQTFCGNTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KLC4</accession>
    <name>A0A7D9KLC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serine threonine- kinase OSR1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A014883</name>
        <name evidence="4" type="ORF">PACLA_8A045006</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014024">
        <property type="protein sequence ID" value="CAB4026121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020044319">
        <property type="protein sequence ID" value="CAB4046005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KLC4"/>
    <dbReference type="OrthoDB" id="8693905at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902554">
        <property type="term" value="C:serine/threonine protein kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043539">
        <property type="term" value="F:protein serine/threonine kinase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006611">
        <property type="term" value="P:protein export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047173">
        <property type="entry name" value="STRAD_A/B-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48014">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE FRAY2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48014:SF21">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE FRAY2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4026121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4046005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="6859" checksum="4CFAA53E2295C345" modified="2020-12-02" version="1" fragment="single">MATSSNASLKKWPNTSNDYDLQEVIGYGATAVVQAALCKPQNERVAVKRIDLEKCGASIDEMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L0X3</accession>
    <name>A0A7D9L0X3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012562">
        <property type="protein sequence ID" value="CAB4023566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L0X3"/>
    <dbReference type="OrthoDB" id="6580598at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45913">
        <property type="entry name" value="EPM2A-INTERACTING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45913:SF19">
        <property type="entry name" value="LOW QUALITY PROTEIN: ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 5-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="25011" checksum="BF7C742DFF0ADFAD" modified="2020-12-02" version="1">MATGKVQTYLDSYIEVGFTSINDHGVEKPQCVICGEVFAASSMKRNILQRHLNLKHPAFSNRSKDYFERKAVAMKASHLDQTGHVQQIQEKLLEASFHVAYRIAKAKKPHTIAKNLIMPCTKDIVRLLIGEDAVKKISGLPVSDNTIQRRIQAMSENIETQLVTQMTQSPMLAIALDESTDVASLSQLVVWVRYIHDDDFKDDLMLCKPLELTTKGGRCVQNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L686</accession>
    <name>A0A7D9L686_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A014848</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014241">
        <property type="protein sequence ID" value="CAB4026517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L686"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="2">
        <location>
            <begin position="29"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4026517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="78" mass="8919" checksum="1A5EBACC01E960C6" modified="2020-12-02" version="1" fragment="single">IDECKNPSLYLCHSGFECVNTLSSYECVCNGRITNGKCEDEGYTRYRLNLRLKEEYTNALSNNASQEFKAIETRIINA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L9L3</accession>
    <name>A0A7D9L9L3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A022399</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020016430">
        <property type="protein sequence ID" value="CAB4029811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L9L3"/>
    <dbReference type="OrthoDB" id="5976830at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="46"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="116"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="264"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="46"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="128"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="147"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="287"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="306"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4029811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1050" mass="120538" checksum="014E69ACAC4DF021" modified="2020-12-02" version="1">MATNFDMNDMTVEQLMALGEILDDSDYEESFEDEVERISEDKFYRVAPKDKGKDPFEGERQFIDEGDRSTDPKRPRRRPLNEKGERGIMPTWKYSERQKAKALLVEEAYQSLLSRGVEGLPPTMGGRWRTDDPQVNAEMKRLENLRNPKRPRGRPPKAKADGAVKAPRGRPPKAKVAGKPEAKVPKPPKAKVSKTPEAKVPKRRGRPPKAKVAEILKPKVRRQTVAEKFISQNRIKLSIPADSVITQVGPSKFTVTVDLSRKPTRKAPEVPKGVAPWKPVPKPRTVIPKERPVPKPRTIPRERPIPKPRTKKPVPPPKLRKPVKVTKEVGEQPVVVAPKEHEIDPFGTYLEKPSYRKIETAANGAAVTYSITPNYMDPLDQMTASRQVVRGILVKELKRMGGLKYTETIKVRMSKEIGNDKTKKDSIYFKSKTGTATNFEGIESTAAQNQLTILSRIETFQNLGSNWIILNIESHYVNIAMYKPLKGSSYMKLPADISNPKCGLINMQNNDNKCFMWSHLRHVRPRARRATTITRQDREFAKNLDYEGIDFPVKISDIDKIEKKNSISISVFGYKGKKQFYPIRNSKTKYDEHMELLLLGHNEGGNHYVLIKDVNRMLFSVSGNSNKKHFCLYCLHSCVSEESLEKHRETCIEVNGTQATKLPSEGTKIKFKNHRNSMPAPFVIYADFESILVPEERKLDSEDPEDKSTTELYQTHKACSFGLKTVCHYDDQYSGEYISHVGEDATVVFLKTVLKESIKCREMVNKIFKKKMEITPEQEAEFWMTRNCSICGNDLGDDRVRDHDHVTGLYRGAAHNMCNLKYRITWKVPVVFHNLRGYDSHLIMQEIGKFKMNINVVPNNMEKYISFSLGKSLVFIDSIQFMASSLEALVSNLSPEDFKIVGQRWQGEDFDLVRQKGIFPYEYLDDIGKLDTEGLPSKDKFYSSLYESEVKEEDYQRALKVWDHFKMKTMRDYHDLYLETDVLLLADVFENFRRTCLENYKLDPAHYISAPSLSWDAFLKQSGEEIELVSDMDMFQFFEKGMRELRPTCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LGN8</accession>
    <name>A0A7D9LGN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Dopamine receptor 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A038403</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016878">
        <property type="protein sequence ID" value="CAB4030445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LGN8"/>
    <dbReference type="OrthoDB" id="9445642at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24248">
        <property type="entry name" value="ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4030445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="128" mass="14645" checksum="74FEC834A82E23BD" modified="2020-12-02" version="1" fragment="single">SSFAVVLFNNTSGMDDHTNRTVTERYLQLITEFYSFVDQLNLADLKIILIFVAICTILGNTLVFVEIWRERSLHQPNKYFIACLAVADLLTGSIVAPLRAYRGSLDVESRRTMSIDLCRFMVWIDTFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LIH6</accession>
    <name>A0A7D9LIH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A030239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019372">
        <property type="protein sequence ID" value="CAB4033576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LIH6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="996"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="996" mass="113261" checksum="15380D509CC5A600" modified="2020-12-02" version="1" fragment="single">GKIVYHGRDIPGTNIENFLQYALLPYNSHIPEPRGLNLFTKGLVEVGVNKDLIKNEYLLTKMAKEEHEMPQSESDVESKSGEENRESDKSDNESEYDDNEDDDNEDDGEPERLACNHCGEETGHIVYLMKCPRCSWKDFYWGKDAQCMICDEQSPLLFSHVIGFCEVCSYARMTPEAREDYERFILSDRPKYIPMKPEKLANLSPEDKQEYENSLKITKTPRRYALRTRSFRPREKIRVQICCTLIYACTRKATRLILRYTPALKNNPYLSIGIHLVMQIRITLIPLITYTPPNDLATHNNATFAKFKTCLLIQITDDSVKNIYVSKIRLYINFDNNFAMRGTQTVQHTKSFNPLHAMTDILYRHLYKSSYDVITPPHSSSLLLTPPHSSSLLLTPPHSSSLLLTSPHSSSLLLTPPHSSSLLLTPPHSSTTLHHLHHRKKGARTASILLLTAKFDGSSTSISGNDGIEAIVNLIPKLVFVMLVLGRNMHSKALVGVMYRSIRMLSTAKWLESLESLLSQLTVTWDGMLILTEDMNIDMLQAENSLTKQYQCMVDVFGLHQVIEKPTRVTKSSKTLIDHLITNFPQRISDTGIIPCSMDHFDHDGIYASINVRVPRFEARHKYIRDIKSLNESLFIEDFSTLPLSVIAYTDDPDEQLESLNSLFVECLERHAPLRRVRVTRPPSPWMKSANIQTLQKERDHLRHKAHKSDACNGVWTAFRLVRNNLKSAIRSVRKAFIEKALSSNKSRDIWRVIHRILKPNPKPLRVDPDELNTHFATTTERTLEASAVSLSDLTSLTDNLPEQSFRKGHSTTSVLLGIRDDIRHAMNKGEITLMVLADFSKAFDTICFKSTIEKFYKLGFSKTFLKWLLSYLSVADLTTGETSMNKTLTKLSNWSQGSNLALNPTKTKCMLFTTSQMSTYHSLSSRFLQLAVEGKVVERVKSTKLLGVHLKENLKWDAHVKHLASTCYALKADLAVALLMTRLTFGIKKAITKSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LLM4</accession>
    <name>A0A7D9LLM4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A063317</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021383">
        <property type="protein sequence ID" value="CAB4035805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LLM4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031640">
        <property type="term" value="P:killing of cells of another organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16902">
        <property type="entry name" value="pesticin_lyz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.530.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023347">
        <property type="entry name" value="Lysozyme_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031922">
        <property type="entry name" value="Pesticin_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16754">
        <property type="entry name" value="Pesticin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="Lysozyme-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0929">Antimicrobial</keyword>
    <keyword evidence="2" id="KW-0081">Bacteriolytic enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4035805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="257" mass="28757" checksum="05843A4B9C8875DC" modified="2020-12-02" version="1">MLVRYSILLVFVLGTVYAQTNNCETEYKPADYKCKRRVPTDCKVEQLDCPTSWKSGIPEGSETSAPMIYQKFLNCHEGFTLCGYVPIHRRSGEVLGQSGVTIGAGVDLGSKSRASFASLSSTLVDKLEPYFGLKRNLAACAVIERPLRLTLEEANILTDAVKNDVVTEVSNRYNRNKDENALPFASLPRGIRTAIVSVWCQFGSPSAYPKFWGFVTKNEWNNAIKELRNFYKNPNKQAKGDLKRRNDEADIIEAALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LN91</accession>
    <name>A0A7D9LN91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATP-dependent DNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A043118</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021419">
        <property type="protein sequence ID" value="CAB4035844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LN91"/>
    <dbReference type="OrthoDB" id="6161017at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710">
        <property type="entry name" value="DNA HELICASE RECQ FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13710:SF153">
        <property type="entry name" value="RECQ-LIKE DNA HELICASE BLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4035844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="84" mass="9270" checksum="318661E2E5F19EC6" modified="2020-12-02" version="1">MQSKAYQENVCAIVVDEAHCILEWSKDFRVDYGNLAVLCATFSSVRVVAMTATANKNDRESIKKSLGLKTCAEVVGNPDRTNIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LVF1</accession>
    <name>A0A7D9LVF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041027</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024907">
        <property type="protein sequence ID" value="CAB4039067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LVF1"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16090" checksum="E03A7C2F5B784BAA" modified="2020-12-02" version="1" fragment="single">IGSGTIIAVKNSLCSNQFDLVQELSDFEVVLVEVTNLYNSRKILLVCCYRQSNDRGFLKNFEQILSRLNTNDHYTVIFLGDFNYPAIRLIEESGFSNSVSGEDNDFVNVLMDNYIYQLVEVPTRGDKILVLVLTYTPFGVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FLN3</accession>
    <name>A0A6S7FLN3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Adenosine receptor A2b-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A074230</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000088">
        <property type="protein sequence ID" value="CAB3978082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FLN3"/>
    <dbReference type="OrthoDB" id="5976103at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246:SF27">
        <property type="entry name" value="ADENOSINE RECEPTOR, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246">
        <property type="entry name" value="OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3978082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="36481" checksum="AF2C72A76C329CE8" modified="2020-12-02" version="1">MATYKNVEEYNHSHLCFNIYVDIEHRTFGHLVSDITVCALDLALMLIAVVANILAIAAYRRTSVLQTPSNYLLMILSAMDILLALTVQPLFFIWKILELANRFSCEVYLGTVLLINFLGAVSFLITSFLISLERYCSVFYPLLHRKNANKRFFKLALLVISMTWLAFLLAMFIGKHHRVYFSVAASVVALCLVGTILCYRNIFREMSRRCGGERIVSVESITDERRQVGRFKREKAILMNMVFIVGAMTLLYAPIGGCVVYAILIGRDWLYMNFFVPWAYLLVFTNNAIHPFLYGWRSRGMRQSINGVIRSVFEETDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FS33</accession>
    <name>A0A6S7FS33_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041679</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000129">
        <property type="protein sequence ID" value="CAB3978626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FS33"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="402" mass="46442" checksum="79A180511206EB48" modified="2020-12-02" version="1">MSRYDRYCENLFHQLKSHDRNSIDIYHAGYVFNNVCAYVSRSIDGGRCYMRVVYLNHRCLIRESLLDLSYNYQDRSGHYEIQFCFPDFYGGLCGIFHEECYEAVRQLNREAAMCSIEQIAVNIAERCPGVIVSQDLIKRQVEYYKSGGLVLLELDHRGRAVADEINDAIVVQLPCDTVLDDEPLSVLQTIASDYKFFDFYLRVGREQGIQLAGGRLWPTIIVDGVMRTIPSFYIYLIAVTKCDNGDRYITIGVVHWLFGIYAKLDIDYRIYPETFKAKRLSVTPIYLPTVTFNSTEFNIDYGNDRDYDDEGRRSLTINEARDYVSGTVDTLITYINENYQTDCLSLATDFEKEHGIAVSKRLAQILIYHQKLVHIVQDWVIKNCGCTRNDQICHCVCILVVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUE9</accession>
    <name>A0A6S7FUE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039604</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000589">
        <property type="protein sequence ID" value="CAB3983215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUE9"/>
    <dbReference type="OrthoDB" id="5987709at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2590">
        <property type="entry name" value="BEN domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018379">
        <property type="entry name" value="BEN_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10523">
        <property type="entry name" value="BEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01025">
        <property type="entry name" value="BEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51457">
        <property type="entry name" value="BEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="175"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3983215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="428" mass="47149" checksum="7E1885E0E8D6E185" modified="2020-12-02" version="1">MKYVLVQWSSGNIKSSILTENYVRDKSMLYDYTKEGIISFVTVQRGDVSTVKNKGKLGRIACVSDDRKLLEEHQNLLLADESEFLIEDDVGSMSLSRSKRPRLDNGVDGQDESVPGLKRKVSKLVEELSVEKSKGQELQKLNQTLQKSLPQLLRYAMQSSKVITQLRTCPNCKESYGNTEAGTPTIESEPTTQDEPTTQDEPSTTDTMNTLPTISSITSEAITQYTSPLNTPVSRTISHTSMSMVASPSIVSVHSNAGSPPSTPDADLAMTLPAMSTSEADSILPKISSAESLKIVPFCNSPEDNNNLLSPRPETSTSLTRPIPLEVTYASTYRKMTLALLCHLFDKEVLKVSSVTGMCSPGRVKRQALDKDIVQYIIDNVQRRFPDVTPKAIKATMAQKCKYLRLPKKKSVGKNADDEANELTVTTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZM0</accession>
    <name>A0A6S7FZM0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein LOC109581930</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058288</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000432">
        <property type="protein sequence ID" value="CAB3981829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZM0"/>
    <dbReference type="OrthoDB" id="6152038at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="28189" checksum="905801BB529AF06E" modified="2020-12-02" version="1">MKKRVCRHHCKCCGINFETSERFSIHLASRAHFMQGLQTPADDIQLVSDNNITLFVDAEGFQDRSLVPDTTEQNLVGLESPSDEENPMDMDGFSDTSDAEVDGKISLTTCRNQEHAYFPFPAEIFFLLYSYAHNISRPKTCTDLEFLWMISEKIGVDVPSLNSILNFTIEGVDKMLQPQKLAIPEKVKSLARYPEETDDYVYEMNQGIKWLNDKEFQTSSITLEGKHYYINDIVQFSHNGDLFMES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G0W6</accession>
    <name>A0A6S7G0W6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Uracil phosphoribosyltransferase homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A018865</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UPRTase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000493">
        <property type="protein sequence ID" value="CAB3982369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G0W6"/>
    <dbReference type="OrthoDB" id="106623at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2020:FF:000026">
        <property type="entry name" value="Uracil phosphoribosyltransferase homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14681">
        <property type="entry name" value="UPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphoribosyltransferase" evidence="9">
        <location>
            <begin position="68"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00044193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF14681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3982369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29771" checksum="C94CA4D448ECDAD7" modified="2020-12-02" version="1">MHESMMAVNGHNLENNTCSNIEEDEELVLNKVRKKLYAGCQDCPLNGSVELIPQFEDFGPRLIRIRMNDQIRELQTVLRDPKTGRGDFVFYADRLIRLVVEEGLNQLPYEEITVTTPTGGTYHGLKFKKGNCGVSIMRSGEAMEKGLRDCCRSIRIGKILIQSETALSKPQVYYAKFPFDVEKRQILLMYPLLNTGATIIEAVKVLEEHGVQEENIIFLNLFATPHGVRNILNQFKQLRILTSEVSQDIILNFGRKYFGTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G610</accession>
    <name>A0A6S7G610_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Arylsulfatase B-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A071941</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the sulfatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000731">
        <property type="protein sequence ID" value="CAB3984377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G610"/>
    <dbReference type="OrthoDB" id="408574at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16029">
        <property type="entry name" value="4-S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.720.10:FF:000007">
        <property type="entry name" value="Arylsulfatase family, member J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047115">
        <property type="entry name" value="ARSB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024607">
        <property type="entry name" value="Sulfatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10342">
        <property type="entry name" value="ARYLSULFATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10342:SF274">
        <property type="entry name" value="ARYLSULFATASE B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00523">
        <property type="entry name" value="SULFATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00149">
        <property type="entry name" value="SULFATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5044005970" evidence="8">
        <location>
            <begin position="20"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="536"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="550"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3984377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="564" mass="63587" checksum="99B699D5CA429FF7" modified="2020-12-02" version="1">MKINLLISLLFNLVYVARGNSKPNILFIFADDYGFNDVGYHGSEIKTPVLDKLANEGVILEKYYVQPICTPTRSTMLTGRYQIHTGLQHGVLRPAQPNSLPLDETTIADKLSESGYKTHMVGKWHNGYYKKECMPTYRGFDSYFGYLNGAEDYYTHVLSGGFPDLLPFSLWSGYDLRRNETVSTKEKGEYSTFLFAKEAQNVITNHDSSSPLFLYLAFQAVHAPLQVPQQYIQQYEGVIKDKNRRTYAGMVSAMDEAIGNVTKTLQEKGLWNNTVLIFSTDNGGQVYDGGNNWPLRGWKGSLWEGGVRGVGFVNSPLLTKPRRVSHEMIHVSDWFPTLVKLAGGDLNGTKPLDGFNVWETINTDEPSPRTELLHNIDPVKTPWYCKRASHGYQWCPQAALRVGDWKLLTGCPGDSRWIPPPNSSLNLNEENYLNNDNKKLFLFNIAQDPEERHELSSQYPEKVKELLLRLEEYNSTAVPVRYPNPDLAANPALHHGVWSPWVISEHADITAYGSTITFAQTRLLISQIPQKKSSTTVYLPSSVTEKDQGYSKSISATRQPPSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7C6</accession>
    <name>A0A6S7G7C6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">HEXIM1, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A021749</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HEXIM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000393">
        <property type="protein sequence ID" value="CAB3981471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G7C6"/>
    <dbReference type="OrthoDB" id="5979777at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097322">
        <property type="term" value="F:7SK snRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004861">
        <property type="term" value="F:cyclin-dependent protein serine/threonine kinase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000122">
        <property type="term" value="P:negative regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2910">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024872">
        <property type="entry name" value="HEXIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13469">
        <property type="entry name" value="HEXAMETHYLENE BISACETAMIDE INDUCIBLE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13469:SF8">
        <property type="entry name" value="HEXIM P-TEFB COMPLEX SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15313">
        <property type="entry name" value="HEXIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02094">
        <property type="entry name" value="HEXIMFAMILY"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0678">Repressor</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3981471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="24345" checksum="6A6806B8770A5E47" modified="2020-12-02" version="1">MHFTSLTCFKMSETCLGEDSRVSKRKKTRRGRRWRLEEKRKFINEYMKQRKHRVAPSNTTQFLMEDREKVEPILNLSPSSSVSTDNESREENDFEIYAELDNFNEQFFLKDFETTYRQLHRDNLYSLSKIELLEKVKYLESHRDSLEKERQLCCNSTSGINNSLKEPIGDMSDSLKSEFLQLQKENDSLRQENISLKQSTANDMC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G7I8</accession>
    <name>A0A6S7G7I8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dystrophin isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011576</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000821">
        <property type="protein sequence ID" value="CAB3985049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5973307at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00176">
        <property type="entry name" value="SPEC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.60">
        <property type="match status" value="30"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018159">
        <property type="entry name" value="Spectrin/alpha-actinin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002017">
        <property type="entry name" value="Spectrin_repeat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11915">
        <property type="entry name" value="SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00435">
        <property type="entry name" value="Spectrin"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00033">
        <property type="entry name" value="CH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00150">
        <property type="entry name" value="SPEC"/>
        <property type="match status" value="32"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46966">
        <property type="entry name" value="Spectrin repeat"/>
        <property type="match status" value="29"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="4715" mass="551314" checksum="BAB43C79F7CEAC59" modified="2020-12-02" version="1">[encoded data, 4715 characters]</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G9Z7</accession>
    <name>A0A6S7G9Z7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086979</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001381">
        <property type="protein sequence ID" value="CAB3988788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G9Z7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="394" mass="44761" checksum="C28FB2CD411BA2A1" modified="2020-12-02" version="1">MADLWEVGNPVSSLIKRLIKRANRFHTMFGSGHGHEKYKGMTDALNLKVLETVTFATTRFFSLSFDQWKKIYESYKGLIQTYRRCREDCDDDEDETRYQVRGEDLAVDFCGMLDILQPVVSLMIRAQVLAKHWQEINAGRLGNNEDEQEPGTFQSLSVPNITKEFYNMFDLEKAFTHLCNFTVKNRKLIMSREHKIEWEIDGVEEFNSFFKVVCNLPHVRSSDSLLMLLPQNSVIVFKRLKDTLENIVWFGLGNRVDLFVDLKGNSVPEFKESHLVSIIALDSESLDQVFSLEFALGVVVKAKLQEDNLIASFYNNNIIFESLGKEMCISLDVALAAGGCEAIVEGFYGVVTAHKKSGGQGNDVLVERAIVDWSIPDPIICPKTMTEIGNLYPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GCL4</accession>
    <name>A0A6S7GCL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003009</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001800">
        <property type="protein sequence ID" value="CAB3991164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GCL4"/>
    <dbReference type="OrthoDB" id="6602337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="613" mass="71519" checksum="0ECA9B43E5968BB2" modified="2020-12-02" version="1" fragment="single">YKQFIVLMHFKCFQRENIVPTTIDRFGLSLLQNLAMGVNKRMPREFTSGQRCIKDVTYRFGQFVREILNNPALVQGERQSGVVPCVIHGLSGATKLLKLETYKELSSLNSGSSDKLSVSFDVKYNCLFFTLLAQKMRENNITKDTRKNSRMSCMQSNVLKYVCCIVIDEAKKRQLRRANRQRGDETALIGELVELPSINGDNLNSNYNSVCSCESTNDDYLDETELLDLLPFLNYLVEQGSDHEDLFISKHIQEAKIKYRKNIRFRSLRVSREFDVLSLPCGGAFHKDELILIGLPSIRFRSLRVSIYVKIYLARFTKRGVRESVRLKRIAQCVKLTVTLLNAILFKESNTQSSNTQIKNFLQFPYCSWIDELYCDRIMHKEHRQNFEILHLADRIFSIWTSRRQDLKRISLKFPSKWKHFGSTSKCFPKSSRSLPKTKSTFQTFRNEVKEVREKMLESLAKFQKHGSGWRFRRVETLEIYIGKFQLLKGKGHMPLPKSIEKKKAIITMKNNDDECFKWAVTRALNLTEQNPERISKALIEHARELDWEGIEFPTPLNNIKKFEENNNIGINVFSADESQKARKRTNQWKKEQKIHLQSLSQRIRFGLRLSEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLF3</accession>
    <name>A0A6S7GLF3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Kinesin-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A020171</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. KIN-14 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002058">
        <property type="protein sequence ID" value="CAB3992465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLF3"/>
    <dbReference type="OrthoDB" id="3176171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090307">
        <property type="term" value="P:mitotic spindle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd01366">
        <property type="entry name" value="KISc_C_terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.850.10:FF:000065">
        <property type="entry name" value="Kinesin-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027640">
        <property type="entry name" value="Kinesin-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019821">
        <property type="entry name" value="Kinesin_motor_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47972">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KLP-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47972:SF45">
        <property type="entry name" value="PROTEIN CLARET SEGREGATIONAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00225">
        <property type="entry name" value="Kinesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00380">
        <property type="entry name" value="KINESINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00129">
        <property type="entry name" value="KISc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00411">
        <property type="entry name" value="KINESIN_MOTOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 12" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="4 11" id="KW-0493">Microtubule</keyword>
    <keyword evidence="8 10 11" id="KW-0505">Motor protein</keyword>
    <keyword evidence="5 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="24"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="12">
        <location>
            <begin position="124"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="24"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="13">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="380"/>
            <end position="387"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3992465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="641" mass="72214" checksum="1E2A9F95E5058C4E" modified="2020-12-02" version="1">MNSKENASSKLKQPIVVRRATLATCQQRNNEAPSTVNTRASSISKRNKAPSHVKRPPAATQSTQQRSLKRQNSNTENMAPAAKVRKGETAIVGKKKGAPKRAAWDYKGRMEDMEQYLSKMKGVQQESIQRIETLESQKNKLQGNVVIKEKEKEEASALSKELQSRLEEKSIAERELREEVEREREEKDRIDREREEYKFELELARNEVKTLKQRISTMTTEILSVNTELDATKVAYKKANNEIERQSSLISELQSTIECNRKTIEDIEAKLRDEETIRRKLHNAVQELKGNIRVYCRVRPSLPSEEDAPLTKIDFENDTDVVLHNGNESISGTKRQASKLPFTFDKVFPPVSTQETVFTEISQLVQSVLDGYNVCIFAYGQTGSGKTFTMEGDLDERETWGMIPRALEQVFYTCESLTGSKGWKYDMEASFLEIYNETIRDLLATGDATTKHEIKQVVTNNGKQANDVFVTNLKTVSVKSTDQVSSLLHKAYENRAVAATNCNERSSRSHSVFRLKLTGNNEITKEQCQGTLSLVDLAGSERLSQSGSTGARLKETQNINKSLSNLGIVFNALANKDSHVPYRNSKLTYLLQNSIGGNSKSLMFVNISPREDSLQETLSSLRFATKVNTCNIGTAQKVKKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTK3</accession>
    <name>A0A6S7GTK3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">WD repeat-containing protein 35</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">PACLA_8A085975</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="19">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">As a component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors (GPCRs), it is involved in ciliogenesis and ciliary protein trafficking. May promote CASP3 activation and TNF-stimulated apoptosis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Component of the IFT complex A (IFT-A) complex. IFT-A complex is divided into a core subcomplex composed of IFT122:IFT140:WDR19 which is associated with TULP3 and a peripheral subcomplex composed of IFT43:WDR35:TTC21B. Interacts directy with IFT122, ITF43 and TTC21B. Interacts with IFT43. Interacts with CFAP61.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
            <location evidence="3">Cytoskeleton</location>
            <location evidence="3">Cilium axoneme</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Cilium basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
            <location evidence="2">Microtubule organizing center</location>
            <location evidence="2">Centrosome</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002608">
        <property type="protein sequence ID" value="CAB3995142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CACRXK020002608">
        <property type="protein sequence ID" value="CAB3995143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GTK3"/>
    <dbReference type="OrthoDB" id="10260567at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005813">
        <property type="term" value="C:centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030991">
        <property type="term" value="C:intraciliary transport particle A"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097730">
        <property type="term" value="C:non-motile cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035721">
        <property type="term" value="P:intraciliary retrograde transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905515">
        <property type="term" value="P:non-motile cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061512">
        <property type="term" value="P:protein localization to cilium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.470:FF:000004">
        <property type="entry name" value="WD repeat-containing protein 35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000187">
        <property type="entry name" value="WD repeat-containing protein 35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056158">
        <property type="entry name" value="Beta-prop_IFT121_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056159">
        <property type="entry name" value="Beta-prop_IFT121_TULP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039857">
        <property type="entry name" value="Ift122/121"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057979">
        <property type="entry name" value="TPR_IFT121"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057361">
        <property type="entry name" value="TPR_WDR35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017233">
        <property type="entry name" value="WDR35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056170">
        <property type="entry name" value="Znf_IFT121-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12764:SF5">
        <property type="entry name" value="LD29485P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12764">
        <property type="entry name" value="WD REPEAT DOMAIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23390">
        <property type="entry name" value="Beta-prop_WDR35_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24797">
        <property type="entry name" value="Beta-prop_WDR35_TULP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25768">
        <property type="entry name" value="TPR_IFT121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25170">
        <property type="entry name" value="TPR_WDR35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23145">
        <property type="entry name" value="Zf_2nd_IFT121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037536">
        <property type="entry name" value="WD_repeat_p35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69322">
        <property type="entry name" value="Tricorn protease domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0970">Cilium biogenesis/degradation</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 14" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="IFT121/TULP4 N-terminal" evidence="17">
        <location>
            <begin position="1"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="14">
        <location>
            <begin position="68"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="IFT121 second beta-propeller" evidence="16">
        <location>
            <begin position="337"/>
            <end position="657"/>
        </location>
    </feature>
    <feature type="domain" description="IFT121-like TPR repeats" evidence="18">
        <location>
            <begin position="1011"/>
            <end position="1110"/>
        </location>
    </feature>
    <feature type="domain" description="IFT121-like zinc finger" evidence="15">
        <location>
            <begin position="1140"/>
            <end position="1181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00058990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00062232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00070596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF23145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF23390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF24797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF25768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CAB3995143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1182" mass="134114" checksum="03C2EF9D98166A11" modified="2020-12-02" version="1">MFIYLSKKIAIPNNTKLQCLSWNTGQGYVACGGEDGLLKLLKLEIQQDKNSKVKGLAAPSNLSMNQTLEGHSGTVQVVTWNNYHQKLTSSDQYGLIIVWILYKGAWYEEMINNRNKSVVKDMKWNAEGQKICIVYEDGAVIVGSVDGNRIWGKEIKLQLSSVEWSSDGKNILFGTTSGEVHVYDSQGNYCTKIVIHCLTNVTGAATIVGVVWYHGKEGYVQQNCPVLAICFDNGRMQIMKNEMDDTPVLVDTGMTVHRIEWNTTGSILAVAGSQRLAQQDRDVNVVQFYNPFGEHLRTLKVPGKELTACSWEGGGLRIALAVDSFIYFAIIRPDYKWGYLANSVVYAFTKPDRVEHCVMFWDTKNQEHYLKYVRNLISITACGDHCILATKSIETNNQYVLVLCNAIGTPLDSKYIDIEPLFVTMSKTFVFAASQQAFISWQYRSPKKLTALDLTNSTFRKENATREKMFHIDDVPSGAGEGIKDLKKAFQPTRDPICCMSATDKTLLIARESGTLHRYSLPKHALEMKYVLNCRPHKISLNSNSSRVAIIDISGVLNFFDLDSKRTDESGNQQPGELLKFERKDVWDMKWASDNSELFSMMEKTRMYVFRNLDPEEPILSSGYICQFSDLEIKSVLLDEIMKDPENPTKDSIIELEVKSLRDARDLLEKVTIEDAHQFIEDNSHPRLWRLLAEAALERLSLDMADKAFVRCQDYHGIKFVKRLAKLDNDLKRQAEVCAYFQRFDEAEKLYIDMDRRDLAVDLRMKLGDCFRVVQLLKTGDGAGEDALLEQAWNSIGDYCADRMRWQQAVTYYQQGQNQEKLVECYYMLEDYEGLENIVNTLPENHHLLADIGALFQNIGLSEKAVAAFLKCNRVKEAIDCCVQLNQWDQAIQLAKQHNIKEVDSLLAKYASHLMEKNKTLEAIELYRKASHFVAAAKLLFKTAKETAEPINNPLRAKKLYVLAALLVEKYHEHVKQTSLKSGKSTKEATTALAGLLEDDIASSEDSQIVDNAWRGAEAYHFLILAQRQLYSGYVDAAMKTALHLRDYEDILDPVVIYSLLALVASNNRCFGTCSKAFIKLESLESIPQEKRDAYEELAIEVFTKNSPKDARTNSVECTSCEAPIPDSSKRCPRCETQFPTCIVTGRPLMDYQFWMCSTCKHRAYEQEIRTLVTCPLCHTVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GZK0</accession>
    <name>A0A6S7GZK0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076349</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001718">
        <property type="protein sequence ID" value="CAB3990737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GZK0"/>
    <dbReference type="OrthoDB" id="10036512at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33053">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19172" checksum="B02E12A7E20A1096" modified="2020-12-02" version="1">MDSLLALLKKSGHPNLPSSARTLLGTTRSIFVKVKSGMDYVYLPLAAELLKHFKRHPPNIVDHIDSLEISLNVDGLPLFKSCNKTLWPVLCAIVNVKPVVAFPVVLAYGKSKPKDLEFLEDVIRDLGDVLENGLQDGNRVLPVSLRCVVCDAPARALVKDTKLCSGYFGCDKCAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H6S4</accession>
    <name>A0A6S7H6S4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038028</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003832">
        <property type="protein sequence ID" value="CAB4000414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H6S4"/>
    <dbReference type="OrthoDB" id="60033at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013587">
        <property type="entry name" value="Nitrate/nitrite_sensing"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08376">
        <property type="entry name" value="NIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="416" mass="48304" checksum="13AA4194452E6133" modified="2020-12-02" version="1">MNISPSYQASSNAEHPNSVITKKDRQYQLAKLFIIALVSIATVTLTIIDVIQTAKSFGKKEELTYKIQGSIDTALVIHNLQTERGMTALQFGFQQLHYEEQRLKLRNIRRKTNESIVILEKSEDTKLSMLTGGTMSFWYALEDFRTKIDHEKTNVIECLQTYRKWIIRLISTLAEYTESENLEDYANVVYAYEMVILSKEEAGMERALGGLKFTQGKNFSTINTTWYNEKRALAENYLETGFLFSSELKNIHTSLFANTSHWIKKIDKKRKVLSGGVYQKFSDDEAYAWFELMTKYINMMLELQVRIAVVIETKLKEEISQSKYQLVIRSLLLCFTLIVVPCIIISLARVQKSFYEYTLSLFDKVGLEQARTDFLMRENSRHVDSKFNLCKCKQNHLKNQQTKRLLSILFGEYSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNV1</accession>
    <name>A0A6S7HNV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A061657</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005036">
        <property type="protein sequence ID" value="CAB4004890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNV1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="52"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="13562" checksum="E2827DE388D9315D" modified="2020-12-02" version="1" fragment="single">MPPIRRSKRVATPTGPQNSVQGQPVAARPALRSRTARGMSRSALSRGADSLPSTSPAATTIASPASIVSQPSLSAELISTLVSSVTTAVTQQLSALLPTTAATPIVPHEEGASSSTHAENLVNDAIASTHSSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HQC8</accession>
    <name>A0A6S7HQC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003173">
        <property type="protein sequence ID" value="CAB3997740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HQC8"/>
    <dbReference type="OrthoDB" id="6114255at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="79" mass="9026" checksum="FFEB3D9CE9B84FD9" modified="2020-12-02" version="1" fragment="single">MVVRIDKCSTFGIKKVLSKSAKYLPKLLINKDLIPTIKIGESFEHLGRHFNMTNQKHKSKLISLIDELMSEIALKPLHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HR14</accession>
    <name>A0A6S7HR14_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068723</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005566">
        <property type="protein sequence ID" value="CAB4006657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HR14"/>
    <dbReference type="OrthoDB" id="2357358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424">
        <property type="entry name" value="PROTEIN CBG23806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31424:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="517"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="517" mass="59579" checksum="3B886CBF395D4208" modified="2020-12-02" version="1" fragment="single">MSDIVKIFDLQKVENHVQVVNPNQCLNYVGKQCVSSEQVVFTVRIPYITLRYWYTCKAKDGLLNKINCSWIEILNYYLNQISGYKIRENCERIEGRLRRLCCQVAAKYVGANGTTFRKLNLNVVNISVRAGEFQTMAELASKLKQEQAKNEQMCKENEILKSRCEELYSQMRDAQKAEKDAHQNLQQATANIDILQTENLELYTYIENIGQDVNFDNKSKKITSKDINIDDPGFKLKIKLSGDGAKMSKLTNFVVISFAVLNKDDDVMASRGNHSIAIIKGQESYELLQTSCAAIFKQVNVLVKEKKISINEKDIPLEMFLAGDYKNVLKYIFITMSQEYYWSDHIVRSLKEIKECAKKQEYSCEHMPLVNIPLENVILDELHLMLRITDKLTKNLIEAALEWDKKDNLNKAPSKRSNQHMEDLLEAIRSCGLSFQVWEKTNGDGSGSGMYDFTSLMGSAKKLLLKKLPDKLNWVIMPDTEEAVIKLWKDFDQLYTLLGKKNLSDEDIQKYFLKDDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2Q4</accession>
    <name>A0A6S7I2Q4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004209</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007091">
        <property type="protein sequence ID" value="CAB4011267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2Q4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="363"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="431"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="367"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="377"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="397"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="442"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="463" mass="50804" checksum="60201F2DAD913A00" modified="2020-12-02" version="1">MAEFEYHEDFNCDEAEEETVQELLKFGIYGEETTLDGMVDTVEKNLNDTKARVAELKTLFGDEENTGNHRGAVPSKTEVNMNDVNISENEDTTSVNDSPHDIGGEISDTGNKDLDLPKVEISTSHAMPGTIGEPSNETTVDVSLQTLEASHHDDTGGEHKPDVPSNTYIPTMLVHGGNEATVDVSLPISTEPHNKEVQILSDVESKHQSVPDDSSKDSEVETVLVSDKGGEIKSSDSNSENKLPLTLILVDAHGVENQSSDVEVWKDGCPLPSSGPTCSEQQTTDDVHSSGAEAISTQVSTAGCLPECEEPCSGCVNIESVMSSEQVSHAPSTSIIEDGTKIAGKERLPQYQVEDDKTVVIGSSMPKNEDQQENGKCKPKKKNKGKQKAKVHKKEKRSKDEKVEKTNSKKFHRRLLSLFCCCFKRQERNDQNNEMKQSTTENKTHCEDTSQRHSSFITIDLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3Z9</accession>
    <name>A0A6S7I3Z9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">H(+) Cl(-) exchange transporter 3, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A074933</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004097">
        <property type="protein sequence ID" value="CAB4001481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3Z9"/>
    <dbReference type="OrthoDB" id="10063284at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005769">
        <property type="term" value="C:early endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3080.10">
        <property type="entry name" value="Clc chloride channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="ClC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45711">
        <property type="entry name" value="CHLORIDE CHANNEL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45711:SF6">
        <property type="entry name" value="CHLORIDE CHANNEL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00762">
        <property type="entry name" value="CLCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="Clc chloride channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0868">Chloride</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4001481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="40905" checksum="1357E85D5CDCBF05" modified="2020-12-02" version="1">MSGCSTACKRSSRRKLESMLLLPVHCYAHTLNLVLSDSASVDVQVISLFNDLEALYVLFSKTQRIHDLFEAVQLEENLKVLSLKRLNTVLWHSRELCLKVLLSRYDCILSVLETVALDSLIDGNPRKTSIGLLKQIQTKQFLATAYLFREIFASTGPLSRYLQRVDVDFGKALGMVESAIDELNELRKQPELIIRYVEQKHDSPSIKTMLGGFIIHGYFGLWTLIVKSLGMMLAVAAGLSLGKEGPLVHVACCCGNVFAKLFPKYRKNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPMKTLWRSFFCAMVAAVTLKYMNPYGTGKLVLFYVKYTTPWKVFELVPFTLLGVFGVSFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I5J5</accession>
    <name>A0A6S7I5J5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A004188</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007036">
        <property type="protein sequence ID" value="CAB4011130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I5J5"/>
    <dbReference type="OrthoDB" id="8251209at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029415">
        <property type="entry name" value="Lines_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032794">
        <property type="entry name" value="LINES_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024875">
        <property type="entry name" value="Protein_Lines"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16057:SF1">
        <property type="entry name" value="PROTEIN LINES HOMOLOG 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16057">
        <property type="entry name" value="WINS1, 2 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14695">
        <property type="entry name" value="LINES_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14694">
        <property type="entry name" value="LINES_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein Lines N-terminal" evidence="2">
        <location>
            <begin position="376"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="domain" description="Protein Lines C-terminal" evidence="3">
        <location>
            <begin position="777"/>
            <end position="812"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="689"/>
            <end position="709"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="697"/>
            <end position="707"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4011130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="819" mass="92740" checksum="FD51139FB25D507F" modified="2020-12-02" version="1">MAEKFEQNLFLQEINQAIKSDKCFKLLLESSTDLTELLFLQKFTDYCENVHKKLEKYELQKPETNVLHKYERNISIRDDIVCNLDILWNICRAGLKPCVCPTFLKLFKIICKENGCLFRVLRNCLNCHDHFIAFQSYKVLCEVCKCFPNSVMWVQFEKLLNMSLSDGSENCSKWLPVYTAEIIKCLFIHKDSSESHKTLCCCMLDEGHSDRTCAKEIRSALCCHWLKLTYHFLARLSTVLKAENSVVGDVSVSKFDPFQQILITMLSYGKLFIESFDLLLANQNMNVHAENVIKQTTENSSLNVDCEKMDLQIGETSKSAKRARICGNENLSNSELHSCQMCQNAIFKDDYMNQSVYGGEVRCTHDYKLKVFLEKIVIQLVEIDHKKCLLHFSRTVFQFLNDFVSAISERCVSREKTNFVHEGTLWTAGVCSVLVESGSRLLGSIPQVMGEVHFGGKDHSGKQETLDVCSHSYDEVSLRKVLLLVLKLMLVTLRTQNDSSRIIESWLNFVTEVSHPELQSVAVWLVQLFSEQDDELIYLLFSLLQLYQELFCGKSLQPVPSWANRLRNSLNPHDFFTEFLTSINYDHSLLLDFLISNETHFLSYFHNYLRHLANDWHGFIENVERRQVLSKEERLQPSGTVQVPKGDGSEFSCCSTKQFCGTVKPFSADGGDHDDGCGDDVYGGFGGDGSVIRNGGGDDDGGDDGDDVGGGFYDGHEIGYIESGDGGFDDGNEFGDNDDGNGVYDDSDGCDEIADDSDDNDGDGRVVLSNMNKIQQTLTCLIRLRYAIERMSSKGLFPYPVAALVKVMKYIETLYEGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIR9</accession>
    <name>A0A6S7IIR9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009090">
        <property type="protein sequence ID" value="CAB4016370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIR9"/>
    <dbReference type="OrthoDB" id="410104at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47027">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47027:SF20">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN WITH RNA-DIRECTED DNA POLYMERASE DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="351" mass="39170" checksum="87C2A487DD604484" modified="2020-12-02" version="1">MHFTATFGPRPCNPAQLLEELSSFVPLTEPNNSLFDAPSPDELATKLRSICNSAPGQDRLEYCHLRLLDPKCEILRLLDPKCEMHVPAAWKSATTILIHKKEDTSDASNFRPITLMSCLYKLLMAVLSKRMTSFTIQNDLLSNEQKSAHPSEGCYEHDFLLESIVNDARRQPCPPSPLMFEMPLAASHMMPSSPPSPTWVSLSHLHWSFHRSSHPLGKTQPIPIHSGVKQGCPLSAILFNLSMELILHKCNAQAQELPCGSLQHHGQSVSILTYADDLVILARNKASLQSLLNVVSSAADVLHLRFRPDKCTSLSLNKHGPWIQSNALLVQGEPIPDLQRENHYRYLGIPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IM19</accession>
    <name>A0A6S7IM19_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Toxin Bro</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049212</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004687">
        <property type="protein sequence ID" value="CAB4003648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IM19"/>
    <dbReference type="OrthoDB" id="7468926at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003497">
        <property type="entry name" value="BRO_N_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180:SF2">
        <property type="entry name" value="BRO FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36180">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02498">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01040">
        <property type="entry name" value="Bro-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51750">
        <property type="entry name" value="BRO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="390" mass="44599" checksum="F0166A0DB2AB304D" modified="2020-12-02" version="1">MEKLFRNRDLNVSVRTVESEGKVLFYAKDVAESLGYSNPRKAIRNHVWGLNKVLLGNISGEQRVPVLGTLRNCHPHTVLLKEPGVYQLIFNSRLPIAEDFQDWVFREVLPSIRKTGTYSLPDRRSLRYNQMILLNETDLHHTVVSYIRDNYPEAVIIPGLGEYQDTSSKRCDAWKKGYKGGQPDIIIENPMGKYKGFAIEFKSPKGTGVASEKQVLWFHKLMKIGYMVMVSDDLVKTCIRINEYFSLKKVAKKVTVNNTQCAVRLYKPRFSSDKTQLNLRYLTSRMEDKPEQTQVVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAEPRESPSNNSMITYIGVAIALISLMLAYKTHQRETKELEPEFIPKTVEVTRKADASKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPL1</accession>
    <name>A0A6S7IPL1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071241</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010582">
        <property type="protein sequence ID" value="CAB4019687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPL1"/>
    <dbReference type="OrthoDB" id="5977627at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21301:SF10">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="19515" checksum="07474074C44C33B1" modified="2020-12-02" version="1" fragment="single">MSKFEKFGSTLCPEIENIVPVTPPRENLSAFTDFYLKPLSQALPSFIKDTAHLLQKISELNDTGPFPDGTLLVSWHVVAIFPNIDNDLGLLAVTQALNSRPNQFPSTESCIVEAVKICLAHNNSSFGKEHYLQIHGTAMGPKNACSYADLAIGIIDERAKLNLIYGGVTGTIFSISGHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IS55</accession>
    <name>A0A6S7IS55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011062">
        <property type="protein sequence ID" value="CAB4020657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IS55"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19406" checksum="4091CCECCDD978A2" modified="2020-12-02" version="1">MVTNVCIDIIFVMEGIIALMVVMNGIGTAQVQPVHQFNLRQQQHGLFVNIGNSDVIMVTNVCIDIIFVMEGIIALMVVMNGIGTAQVQPVHQFNLRQQQHGLFVNIGNSDVIMVTNVCIDIIFVMEGIIALMVVMNGIGTAQVQAVHQFNLRQQLRNVSERLHLLIVGSSPLPQCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ITT2</accession>
    <name>A0A6S7ITT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011263">
        <property type="protein sequence ID" value="CAB4021093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ITT2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004245">
        <property type="entry name" value="DUF229"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974:SF39">
        <property type="entry name" value="E2F TRANSCRIPTION FACTOR CC-MB DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10974">
        <property type="entry name" value="FI08016P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02995">
        <property type="entry name" value="DUF229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="437" mass="48827" checksum="7CB8B33AE272AAB6" modified="2020-12-02" version="1">MAAQHKTTLTILLSDHGSKTTDYAIRTVHGLKEIYKPFMFMIVPRQAAKVLGNERMGNLIRNQKRLVALEDLNLALDDVVRGFGEGKEENIAGNIRNGAEVNEDDKMDFGNAAGSKNGNGLFGNISANRNCSELQLSADAVCLCEGEDVDAIMDSFFLDFLASIAVGGLNNRIQSQYTSEALNNDNINNEMALSKNVDKETKGKNGMPEDVEDANVLPNKKQRLGGYGNCLRYILKRVERLRRKVIGEERITTFNVVVNTVPAIDKRDEIFEMTLGHHLTNKNGIKLLKVTRLSRYSLFKSCADAKVHLDLCTCDNNSQTDPKNYMWELLGHYMFAQPSNIDKLEFPCLYLITTRRQRFLKSGNGRDAVLAYEIISACDKIFNVTLSDTSLVRQPFILSRALPFSLMVYPNAAHHVISAFCGLPDGEFVASFKIHML</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IVS4</accession>
    <name>A0A6S7IVS4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Band 7 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A004724</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the band 7/mec-2 family. Flotillin subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011657">
        <property type="protein sequence ID" value="CAB4021846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IVS4"/>
    <dbReference type="OrthoDB" id="6080404at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031410">
        <property type="term" value="C:cytoplasmic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016600">
        <property type="term" value="C:flotillin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002020">
        <property type="term" value="F:protease binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901890">
        <property type="term" value="P:positive regulation of cell junction assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000049">
        <property type="term" value="P:positive regulation of cell-cell adhesion mediated by cadherin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045807">
        <property type="term" value="P:positive regulation of endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070528">
        <property type="term" value="P:protein kinase C signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072659">
        <property type="term" value="P:protein localization to plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002090">
        <property type="term" value="P:regulation of receptor internalization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03399">
        <property type="entry name" value="SPFH_flotillin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="entry name" value="Band 7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027705">
        <property type="entry name" value="Flotillin_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13806:SF46">
        <property type="entry name" value="FLOTILLIN-1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13806">
        <property type="entry name" value="FLOTILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="Band 7/SPFH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Band 7" evidence="5">
        <location>
            <begin position="11"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU366054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4021846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="31272" checksum="B92545772BF1B761" modified="2020-12-02" version="1" fragment="single">MPLFFATCGPDQVMAISGCGYKPYRIIQGGRAIIMPCFQKVQKMPLNVFTLNVQSPKAYTHHGVPVIVSGIAQVKINSQNEDMLRQACELFMGKKAEEIRNIALETMEGHQRAILARMTVEEIYRDRKKFAKSVFEVASADLLTMGISVIMSFAFVVVVVIVVVVVVVVVAAVAAVAAAVVAAVAVAAAVVVVVAVVVVVVAVAVVVAVAAVVVVVVPAVVVVAAVVAAVVAVAAVVVAVVVADVVADVAAVVVVAAVVAAVVAVAAVAVVVAAVVAAVVVVAVVVAVVAVVVVVAVVVAVVAVVVAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWP3</accession>
    <name>A0A6S7IWP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012697">
        <property type="protein sequence ID" value="CAB4023815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWP3"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="136" mass="15580" checksum="836AAFA48A2383B4" modified="2020-12-02" version="1">MKRHFAVHGVPELLMTDNGTQFVSEEFKLFAKDWSFKQVTSSPTYPQSNGLAENAVKQAKKLLEKSKRDGSDLILGLLNLRNTPRDDSLGSPAQRLMSRRTRTVPPMSNKLLKPNVIPCKQVSQRIRRKRKQQKTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1K7</accession>
    <name>A0A6S7J1K7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A061606</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012603">
        <property type="protein sequence ID" value="CAB4023641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1K7"/>
    <dbReference type="OrthoDB" id="62528at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010441">
        <property type="entry name" value="CH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054517">
        <property type="entry name" value="SPEF2_D5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052634">
        <property type="entry name" value="Sperm_flagellar-bone_growth"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14919">
        <property type="entry name" value="KPL2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14919:SF0">
        <property type="entry name" value="SPERM FLAGELLAR PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06294">
        <property type="entry name" value="CH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22946">
        <property type="entry name" value="SPEF2_D5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CH-like" evidence="1">
        <location>
            <begin position="2"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="CPC1/SPEF2" evidence="2">
        <location>
            <begin position="327"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="572"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="572" mass="67221" checksum="BF1B5EA499E1B5E5" modified="2020-12-02" version="1" fragment="single">KENVSKLFSSGYLFGEILFKYGLQDDFSSFSKGRTADSKLNNFTRIESVVKLLEIPYDTNVAKSIMNENHGAATKLLYQLFIALGRKAKKNLTGVAMETMRPSAPVKLETIESAIHKERLKQLVPRQVDVNFETLVERYQSKQKLQEEMAVKAKQEEEMKVRKYQQDLRQRGLEKSRLTRDKQNEVMQKIRDAQVRIPKPPESKKSTKTKQEIRKEVEIQEVKDHISSFEESMRTNLPPQSSVHLDSEFEAKQDVDLESRVLRKPLQPIALKTAGDDYVSKVKKRLNEDAVARKEREKRRRRVLIEQLKAHEAQEEQRREEMLVKRLMRQSQQEKRIAVQLMQIRHEKQVIKENRIFREKQYTERRLKDFEDALNREAEMCRLAQIEYRDQIQKAEDERRELLEERRKAKYEKHYDICQQILSDIVDFSCKIGEYRELTEGDVPEKLFREWKGYFDAALPLYSYEILTEDEIERSKELLVEEERNKLTDESDFIEYRGAVGEWAPSDEALDVAQIPPKDNPILGHIIQKLFNIIYPPEPPPPTPEFPPFPVKACFLGKFFSGKTTAVQRLIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J1M0</accession>
    <name>A0A6S7J1M0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012738">
        <property type="protein sequence ID" value="CAB4023894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J1M0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="16871" checksum="2C2484D646A1EE73" modified="2020-12-02" version="1">MSDTELGPSETPEEPKADEEVKQKLVLIELNRRKRASKRSTTKARHHLEKLIVEKAEVDIQELEHRVETLWQILEDTQVIMDEMSAYFMEQKDFESHKLVMQESNELEGNKTAPNTGGEAETEVTDNQGVSTSVTGDEGELDIADDVTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JA23</accession>
    <name>A0A6S7JA23_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016104</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013855">
        <property type="protein sequence ID" value="CAB4025850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JA23"/>
    <dbReference type="OrthoDB" id="3230070at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="302" mass="34239" checksum="09DF7E9AFE2A262D" modified="2020-12-02" version="1">MRYRNPDFDAVVLHPRVLKVAANGLRTRQGKSPLDLSKPFDSVDHSILLKKLSNIGVSDEDLNWFESYITDRKQFVRVGSSVSEVFPITHGVPQGVKLSSLLSCIYINDLSRVPQASELESFVDDSKIFMSFPIEDIASAKTKIEEVLKLVATWFFENKLLINPEKTKLLLIIGTRQLLGKLLEGTSITFLGEEITPTTNAKDLGLTLDSYLTYDYHIKNVVSSCMAKLINRVKDSFDRNSLRLIINALVMSKLYYCSTVWSNTSATNIKKLRAVQNFACRKRYDQLIPALRAIRWLAVEEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JN83</accession>
    <name>A0A6S7JN83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009824">
        <property type="protein sequence ID" value="CAB4018042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JN83"/>
    <dbReference type="OrthoDB" id="5841748at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046450">
        <property type="entry name" value="PA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039373">
        <property type="entry name" value="Peptidase_M28B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10404">
        <property type="entry name" value="N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10404:SF46">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52025">
        <property type="entry name" value="PA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="225" mass="25775" checksum="72FB20A0AA36535E" modified="2020-12-02" version="1" fragment="single">MPWKRRKSYTKMELEKYQYSIEYTLCCFITFSSDYIRPFPVFKGILLAILIGFLLGYFIPKCDEDNQNWMPQSNASKNYEADLLAVLDSKAIENISRTFSSVPHLAASPRDVEMAGIIERLWKQYGFEVELPTYEVLLSYPKKNTSNKVQIINQTGHTTFETTDLLDGDGVPSFLGYSGSGTVWGDLVYVNYGIQDDFKVLRNYSISLNNSIAIIRYGRIFRGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JND8</accession>
    <name>A0A6S7JND8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081681</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arrestin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019814">
        <property type="protein sequence ID" value="CAB4034096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JND8"/>
    <dbReference type="OrthoDB" id="2333384at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.640">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014752">
        <property type="entry name" value="Arrestin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011021">
        <property type="entry name" value="Arrestin-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011022">
        <property type="entry name" value="Arrestin_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050357">
        <property type="entry name" value="Arrestin_domain-protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11188">
        <property type="entry name" value="ARRESTIN DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11188:SF17">
        <property type="entry name" value="FI21816P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02752">
        <property type="entry name" value="Arrestin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00339">
        <property type="entry name" value="Arrestin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01017">
        <property type="entry name" value="Arrestin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4034096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="358" mass="40644" checksum="C653F10E8A515886" modified="2020-12-02" version="1">MDVKPEVEIKFEDQPAIFHVGKEAIKGDVGISITKLMKTQMIKVEFKGVCQVNWKKRGVSDEKCKSVEHFNIEDKLLTPRSEYNDLFLRPGVHRFPFVFQLPPAMPPTFAATDGKIEYFARVVVHYRDDGSMVSNEVCAEAPLVMKKSIGNFPQKFLQCAKLKQQLTLPKFLSRPTTIDVEAKIPKRVYHRGEIIRLTCDYRILHGSVSSVSGIYAVLMQGFSVIKASGREKTKTREILRAPPFQGNGEGTQWSDTYMNIPEDISLTVQGCGGVMIFYFIQVRARKSKERIDIPIVIIDRDESKSINPGSKRRERRLSLTGTTVAVPNVFQTFNALNRQDPMRASTTSIDSLQLYYRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPJ0</accession>
    <name>A0A6S7JPJ0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Mutator-like transposase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A020303</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018081">
        <property type="protein sequence ID" value="CAB4032044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPJ0"/>
    <dbReference type="OrthoDB" id="5983687at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049012">
        <property type="entry name" value="Mutator_transp_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20700">
        <property type="entry name" value="Mutator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mutator-like transposase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="207"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="207"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="217"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="27634" checksum="E1A2DE0BF0A8CC4E" modified="2020-12-02" version="1">MGSRLRSLKKRLGKTHLSDGKGIGGKGRLTDKVIDNLQVYYGKAIRNNTHSIEDMENAVLAIFHHTRSTDANPDHNLCPKGETSWCGYQRDLAKNTNEYSHSHPLPEAVSDSILPVFTDLSKSQLLSSCLHGGTQNQNEAFNALIWQRATKETHSSLPTVELATFLAVGIFNNGAKAILDVLENLGIKPGCQTKKCLKKIDYDRLRHSTRKSSDKQKNKRKKIRQRKKGYIDNLSEKEGTKYEAGAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYI7</accession>
    <name>A0A6S7JYI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A055524</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022561">
        <property type="protein sequence ID" value="CAB4036927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYI7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="55" mass="6345" checksum="04C91374DE170CE9" modified="2020-12-02" version="1" fragment="single">EISAAAKLKEEKRKELNRFRGKHRRLDNKVGSLVKAIEDLNDIQNELVQPDSTDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1G8</accession>
    <name>A0A6S7K1G8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 ubiquitin- ligase PDZRN3 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010291</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021136">
        <property type="protein sequence ID" value="CAB4035530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1G8"/>
    <dbReference type="OrthoDB" id="1630758at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="155" mass="18116" checksum="520C665078DD3724" modified="2020-12-02" version="1" fragment="single">MAYRMENGEQGYDDRVLKVECPECRERLTAETLKDPPRFLKNTLSELKIKCDYNERGCPGYVQLGNLQSHVERCDFAPVACGHEGCEMMVNKKDKVAHERELCLFRMNSQVWKAIKASQDEIKLKILKMYRNVTDCQTEIKVHIKEVEIKQDDMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K389</accession>
    <name>A0A6S7K389_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054741</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025905">
        <property type="protein sequence ID" value="CAB4039815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K389"/>
    <dbReference type="OrthoDB" id="2686689at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6306" checksum="0343EC6566AEB55A" modified="2020-12-02" version="1" fragment="single">AESFSQITNDELDNLIKAILTITPQSGLGLIRGALRSRGLLVRQRHRVIAALQRLDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K4X0</accession>
    <name>A0A6S7K4X0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047487</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025475">
        <property type="protein sequence ID" value="CAB4039497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K4X0"/>
    <dbReference type="OrthoDB" id="6158912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14464" checksum="507B2395285387F3" modified="2020-12-02" version="1" fragment="single">NDVELNPGPVISSEHLEHCSSVVNNRSNTIATERKTFRCLSWNTRSLFSLHRTSDGDMISNNSSLQDFVYSEQIDIGFLTETWLSDKHFDAEILRQDYNVFRVDRKCKTGGGVLIATKESSFTETKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBH8</accession>
    <name>A0A6S7KBH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029439</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009711">
        <property type="protein sequence ID" value="CAB4017798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBH8"/>
    <dbReference type="OrthoDB" id="10605741at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="14"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="119"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="175"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="198"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="249"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="30181" checksum="FB29154C42B853F4" modified="2020-12-02" version="1">MSASVSKSRSPVERSYSSASSTTSSRRSGRRKRKRMKHTVMPLKKRTGRHEVPCDVHRVSNLDHEEMEQSACFWVAKNIDNPSERSFKEDVFVNKDQDSSDDEMSYLEESRQSQTSGEFSHEVRTETHTDAKYISEEKRFDDEKENNAKNANEDGERDDANYSEEKTFYGVRKGKMQDGDDVKRVSPIPLPRNRSRVSSFSDDGHSGFSSEGMHVGWTSDVGVSSGPEYSAMTDEDSGGEGGHKKTRRGSKEFDGYRKKSVEKSGNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KC96</accession>
    <name>A0A6S7KC96_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020030045">
        <property type="protein sequence ID" value="CAB4042397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KC96"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="138" mass="14744" checksum="3EE23D7AB37082E8" modified="2020-12-02" version="1" fragment="single">MNKNQQPIPTLVSPVQSDGKLTYPYADVTPPPENTAAQTKPPADSSANVQSTGAQPEQPAQEGVPEESSDIGTRPYGQPSPYGQRSPYGQYGAGNQRPGQYQGYGAQGQQGAYGGYPGTQHRYPGTQQRYPANHHGQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEH2</accession>
    <name>A0A6S7KEH2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A020437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029777">
        <property type="protein sequence ID" value="CAB4042258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEH2"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="218" mass="24350" checksum="5EB49D74A6100E21" modified="2020-12-02" version="1" fragment="single">RISTAETKNDQESQSPRIKADNPDDITSMFNSYFASVFDSDDSLREETSHELETPVLFEIILTVEEVQAVLQTLDVTKATGPANVPARLLKETAPVISTSLCTLFNKSLSEGALPEDWKIANIIPVYKKGEKEYTENYRPNSLLSIVSKVLERCVFSNIREQLYQVIKTSQHGFNRGKSCVTNLLEVFNYIGSILDVGGQVDAVYLDMSIGLFKNQVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEP5</accession>
    <name>A0A6S7KEP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Quinone oxidoreductase PIG3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A089580</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029944">
        <property type="protein sequence ID" value="CAB4042348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEP5"/>
    <dbReference type="OrthoDB" id="3509362at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003960">
        <property type="term" value="F:quinone reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48106:SF18">
        <property type="entry name" value="QUINONE OXIDOREDUCTASE PIG3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48106">
        <property type="entry name" value="QUINONE OXIDOREDUCTASE PIG3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4042348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="17970" checksum="7BD921855428031D" modified="2020-12-02" version="1" fragment="single">MPVPANLALSDAAAIPEVWLTAYQLLHLLAGVKSRECVLVHAAGSGVGTAAIQLAKLAGARALATAGSQEKLDMAEKMGAEGTANYKNEDFSEMVLKKTNGAGANIILDCVGSSFVDKNLASIATDGRWILYGLLGGANVEGRFLGALLRKRISLIATTLRSRSLEVSKSDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KNQ4</accession>
    <name>A0A6S7KNQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032785">
        <property type="protein sequence ID" value="CAB4043631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KNQ4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4043631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="118" mass="13494" checksum="D9D3191C6D759619" modified="2020-12-02" version="1">MALEKGQVFIEEGLRDMTIEDLQEFSNIFASEFNNSDIHDRVLCFQIIENETKVVDSEDEYESRCESETGSNLHVLSGDVFSTEYEDQPVEVKDNSCEMTSIDGNMFLNYKLMAIMGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L7A5</accession>
    <name>A0A6S7L7A5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine- kinase ppk4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069554</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020650">
        <property type="protein sequence ID" value="CAB4035043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L7A5"/>
    <dbReference type="OrthoDB" id="63989at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990604">
        <property type="term" value="C:IRE1-TRAF2-ASK1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070059">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036498">
        <property type="term" value="P:IRE1-mediated unfolded protein response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045133">
        <property type="entry name" value="IRE1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954:SF28">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954">
        <property type="entry name" value="IRE1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="256" mass="29276" checksum="3F42D7D63161B159" modified="2020-12-02" version="1">MGTSVYVAILEDGSEVAVKRMLIESCQDAAENEKNILSLTNTEKSPFIVSYRHFLKDITFVYLLVDLCEETLDEHVHSQNIEHLRIHGRRMINEMLTGLKFLHDQGILHRDLKPSNILVDVDGHMRLADFGISRVLNEDETTFNTDAKGTERWMAVEVMESIDKIGEGRFKKKSDIQSAGMITFFILTKGEHPFGSTRYECMTNIRDGNPVNLNILDDLDGREFVARLISHKIDDRPYAHIALLYPFMDIIHQGNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LPH8</accession>
    <name>A0A6S7LPH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026007">
        <property type="protein sequence ID" value="CAB4039892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LPH8"/>
    <dbReference type="OrthoDB" id="426210at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="133" mass="14382" checksum="DF0BB3D5C5BB6089" modified="2020-12-02" version="1" fragment="single">MGSNGLDPDSARSASCPRDIAELFNDHFSSIVSGSDKTAQTDNPSSPTDSNLSELILSPDDVLAALLSLDTNKATGPDEIPPRILKECAHQIAPSLYLLFNQSLRHGSLPEEWKLANIIPIHKKGDISNVENY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LR24</accession>
    <name>A0A6S7LR24_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A065922</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024779">
        <property type="protein sequence ID" value="CAB4038949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LR24"/>
    <dbReference type="OrthoDB" id="6772952at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="13556" checksum="D13F377576F39AEB" modified="2020-12-02" version="1" fragment="single">MATSLLEFASFDAENRENIEIRWQRWFMRFENLLIAHDIKDKKRKRALLLYYIGESTLNIFETLPETGTEDDYEEACQALNEHFKPRKNTSFELFKFRKTNQLVDETLDQYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVF5</accession>
    <name>A0A6S7LVF5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phospholipid scramblase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A088144</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">May mediate accelerated ATP-independent bidirectional transbilayer migration of phospholipids upon binding calcium ions that results in a loss of phospholipid asymmetry in the plasma membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phospholipid scramblase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038242">
        <property type="protein sequence ID" value="CAB4045229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVF5"/>
    <dbReference type="OrthoDB" id="5964717at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017128">
        <property type="term" value="F:phospholipid scramblase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005552">
        <property type="entry name" value="Scramblase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03803">
        <property type="entry name" value="Scramblase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0106">Calcium</keyword>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4045229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13876" checksum="A23AB69CE4306674" modified="2020-12-02" version="1" fragment="single">MHTNNSFSEDAQPAIVRAICSTNRPFFMSVFDKTSKNKILEFERLMKCCSPILFPSSRATIVVRDRRAQILGFVKHAARETCVSWFGPSEYYEVADDKGNVEFIVQGPGGCVFECRRPSVFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVP1</accession>
    <name>A0A6S7LVP1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012976</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039834">
        <property type="protein sequence ID" value="CAB4045499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVP1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14134" checksum="E327D069626E9C5E" modified="2020-12-02" version="1" fragment="single">TRFLTLHEDKVPDVEDKVPDAEDKVPDVEDKVPDADGKILDCEDKVRDVEDKVPDAEDKDKVPDVEDKVPDVEDKVPDVEDKVSDAEDKVPDVEDKVADVEDKVADVEDKVADVEDKVADVEDKVPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVX1</accession>
    <name>A0A6S7LVX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Tf2-8 poly, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016793</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020046909">
        <property type="protein sequence ID" value="CAB4046173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVX1"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38681:SF1">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38681">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="228" mass="25466" checksum="0822D513AF9056F2" modified="2020-12-02" version="1">MSVQGEGIGAVACAKNLVDWIAMFGVPKSVISDRGPQFSSSLWEEVGKILGFKSNLSTAYHPQTNGKVERMHRSLKNALRSRLDGRNDWLCELPWAILGLRNRPNTDSQLSPSELVFGGKVRLPGQPTLPISKIQPATFAEKLKNAVANQDKPTTQWHLAQNSNFNVPQVLKKCEMVLLREERKLSSLRPKYCGPFKVLNRNAKTITIGLPTGEEKVSIDRVKPYFDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D652</accession>
    <name>A0A7D9D652_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A062665</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endosome membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Late endosome membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Lysosome membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
            <orientation evidence="3">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the CDIP1/LITAF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000043">
        <property type="protein sequence ID" value="CAB3977348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D652"/>
    <dbReference type="OrthoDB" id="5599753at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031902">
        <property type="term" value="C:late endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006629">
        <property type="entry name" value="LITAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037519">
        <property type="entry name" value="LITAF_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23292:SF6">
        <property type="entry name" value="FI16602P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23292">
        <property type="entry name" value="LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10601">
        <property type="entry name" value="zf-LITAF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00714">
        <property type="entry name" value="LITAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51837">
        <property type="entry name" value="LITAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3977348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="16486" checksum="C1A6B2733EC4D579" modified="2020-12-02" version="1">MEPQQQPPPYSAGTSAPYPSKAGGPPMQAGHAPMQPGYQANSGYRAANPGYPSGANPAITTTTTRTVVQQQPPVMISPCYMYGELPVSMQCPTCHTQIVTATEFAPGALSWLACCGLAAVGCVLGCCFIPFCVDEMKDVTHTCPNCKVILGIYRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DBA1</accession>
    <name>A0A7D9DBA1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Cytidine and dCMP deaminase domain-containing protein 1</fullName>
            <ecNumber evidence="2">3.5.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Cytidine deaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A069970</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>2'-deoxycytidine + H2O + H(+) = 2'-deoxyuridine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13433"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15698"/>
            <dbReference type="ChEBI" id="CHEBI:16450"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>cytidine + H2O + H(+) = uridine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16069"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16704"/>
            <dbReference type="ChEBI" id="CHEBI:17562"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.5" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020000348">
        <property type="protein sequence ID" value="CAB3981057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DBA1"/>
    <dbReference type="OrthoDB" id="6710946at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004132">
        <property type="term" value="F:dCMP deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015517">
        <property type="entry name" value="dCMP_deaminase-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11086:SF14">
        <property type="entry name" value="CYTIDINE AND DCMP DEAMINASE DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11086">
        <property type="entry name" value="DEOXYCYTIDYLATE DEAMINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="Cytidine deaminase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="12">
        <location>
            <begin position="76"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="12">
        <location>
            <begin position="360"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="320"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="413"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="529"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="415"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="541"/>
            <end position="550"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00040574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00041919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00049558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3981057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="550" mass="62434" checksum="B439BFFF1975A345" modified="2020-12-02" version="1">MIYSSLLYFVYNVRPINCLLTLSQPPLPTAGFALHYIILNLNNMASSAKRPRTQSPEDENKGNQKGLYAKSYSRVSKHNLYMIIALWMEDFVDAKAPKDHRKVGAVLVLPNDVIFAADCSRLDGVHAVARLLMKHCDKAKGCKMFMSRKPCPICAKLLVQSKVERVLFLPREPEYYRSPKVIKPDADEKAREEINNINDDNNTQMKQVDNMFTASVIAQTRFVLQVEKQVLADSVVKSGKTLAEIEKQIKKDKGKLMKTYDFKPEWIGSIEIIKKNLPWPAFDEDVQAEVLKYFDNVMEWMARAIALPSRELNFEPAIKKTETTDGRDDDDAIDPVKNPTHAKQANHNTFDPVKNHTHAEQARHFMSIARFLAQRTDDPTTGVGAVIVSREMEILSFGWNGFPLKALYGEFPRASSKDDKSSKTEKPVGSDKSGEKKEPVKKKYPYVIHAEQNALLFRNNKNIKDAILFVTRTPCDECAPLIFMQGIETFVVDDDVFARDATQKGALKYEEFTRKIKTDKSGKFVCFQTREPEADPGPSKGRKDLFNPDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFJ0</accession>
    <name>A0A7D9DFJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Synaptotagmin-2, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039471</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000753">
        <property type="protein sequence ID" value="CAB3984554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFJ0"/>
    <dbReference type="OrthoDB" id="67700at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070382">
        <property type="term" value="C:exocytic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098793">
        <property type="term" value="C:presynapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005544">
        <property type="term" value="F:calcium-dependent phospholipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030276">
        <property type="term" value="F:clathrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001786">
        <property type="term" value="F:phosphatidylserine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000149">
        <property type="term" value="F:SNARE binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048791">
        <property type="term" value="P:calcium ion-regulated exocytosis of neurotransmitter"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048488">
        <property type="term" value="P:synaptic vesicle endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00276">
        <property type="entry name" value="C2B_Synaptotagmin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10024">
        <property type="entry name" value="SYNAPTOTAGMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10024:SF227">
        <property type="entry name" value="SYNAPTOTAGMIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="381" mass="43737" checksum="076211B13AD98276" modified="2020-12-02" version="1">MHAKFGNTREQVKGLFYQNNTRKKLNGSLNAKQNLPRGHFWHFWSHFVRICGGAMQMVSYVPRTAPSSTAEQRGQCVQPGIGGDVELARELRDGTLDFEYTLEPNVPLGKVQLSILYEIEVRKLNVLLLQAKGVVCQTQRNSANLYAKVLLTKDTEGTKLTSDRCTKIQRMIPEPQFHEEFSFCVNEREIGYATIQVCLYEIDAFSKSHALGQVCIDMKDVDITQRMTGWFDLYEEEEEKRPTSGDLLLSLNYFPTAGRLTVVIMRARDLKIEHKTGAWGVFVKVVFLYNHKRVSKKKTVVVRKTENPIYNEAFVFKVPKEAMAYSSFKILVVNRTSYGRDEALGDITIGPQEYKDGLLHWNKMLMELRKPVAMWHPIIMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DJG2</accession>
    <name>A0A7D9DJG2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tetratricopeptide repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031684</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000979">
        <property type="protein sequence ID" value="CAB3986210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DJG2"/>
    <dbReference type="OrthoDB" id="771227at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041664">
        <property type="entry name" value="AAA_16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orc1-like AAA ATPase" evidence="1">
        <location>
            <begin position="90"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="882" mass="99534" checksum="402BCA769BD1118A" modified="2020-12-02" version="1">MIWRNFGRRTLLHLIRSSRHCRTATSQSEVKKLYMRNVFKDNPSAKYYLLTVVAVTAGTTYYVYNNQKKKKFILNVLPAAPNHYTISHYDEIAKLKSLLERGKTGRLHEVHISGPPGSGKTQIARLLAESLNETRKESFQFKIWPKDEVTTTLLAQSKESLLASLKQLASKLGCEQDEVKLESHDLEQQLDVFSQAVKEKLKHKPCWVLVVDNHDESRPLRKWLPDSDWGNGYVIHTLNSQNISVSENECQYTHFSVNQLTSEFAIQIFSGITSESTDDLESQREQLEYLLNLLQYNPLSVACAAIYYKYKVQQNRNYTHENLCTDIDQTVKQLQEIDPGSNKLQIIQSSSVTLATKALGECSPELLHVFDFLGSCSVNNPIPVSLFSHHLKTSTYHVQMKPEETAEQIVPTEDTSLSMNATFEQEHNLWSFRGIVDRAVKIYQRIKLEVDAIRGLFGYGDAALGAQSKSISDGLEVIRSCPLFIISNEPMADIEIVTVHPIVHNVLRQVFMNVTIPLLEQQHLLLAERKHQHKSYFGRMRSFDPQSSIAEYRRGLGDIASLKVDKGVGEENFGSEKARSYVNNIHHNKDGDDSPSQTQSQYTFAHLQEHLSRVVNSLSNHYRIAGGDGNVLVARTMLLPHLEALLQERSLTAASRAQVYRTMANIHFEVFGDYATGMQLLNKAYAVTKERYGEDSLEIAGILTEQAELCNTTEKLGQSKLLLERAVEIYQKNIKTSQTNKQPFQYGKALVTLGVTCSSLGDTSRSKDLLEKGLMELQNAAPDDPHARENKWFAAEISSAVTNLGHAYLSLGKINQGRKLLELALIGHQNVHGDTHHEVIRTLTTLSIAHAMQGNSQESKRLRNEAGKIKKKLDMKAPLFLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DMU0</accession>
    <name>A0A7D9DMU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A002050</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001358">
        <property type="protein sequence ID" value="CAB3988647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DMU0"/>
    <dbReference type="OrthoDB" id="5804959at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00033">
        <property type="entry name" value="CCP"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="CDD" id="cd00190">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.10:FF:000054">
        <property type="entry name" value="Complement C1r subcomponent"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.70.10">
        <property type="entry name" value="Complement Module, domain 1"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035976">
        <property type="entry name" value="Sushi/SCR/CCP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000436">
        <property type="entry name" value="Sushi_SCR_CCP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46393:SF7">
        <property type="entry name" value="COMPLEMENT C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46393">
        <property type="entry name" value="SUSHI DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00084">
        <property type="entry name" value="Sushi"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00032">
        <property type="entry name" value="CCP"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57535">
        <property type="entry name" value="Complement control module/SCR domain"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50923">
        <property type="entry name" value="SUSHI"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 8" id="KW-0768">Sushi</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3988647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="929" mass="104919" checksum="D40FBB4CB2407D27" modified="2020-12-02" version="1">MTGWHAEQWNFQNNEKTMEHFDYSECGTSSFKPIHSRARIVGGKIANEGDWPWAVRILIGDKHACGGTLINQEFVLTAAHCFGVDKTDLHHVKVSLQDRNHSCLALHIHHDYNARNYRNDIALIKIPKLKHFTRNQQAICLPREISMANIVKDGNEMYAVGWGRTTPIKPKEFSSVLHLSNDLKQVKLPFKANKFCEDNVKNKTAKELKWMKDIWYFNSTTQFCAGDITGQQDTCHGDSGGPTMVFHTHPVSGKRRWFQVGIVSWGYGCAQKGEVGFYTKVSAYVDWISQIAQLSSTNRNRTHTMIFKYKEKCSDPSGNTNANVIGKEFYHGKEVEFVCPRDSILVPARSKNLTCQDGQWRGTIPSCKASCPSLTQLSDGYKSSRSRTHGSSVQFRCSYGNKLVGSARVVCNDGRWSNQMPKCLAMCNRIRSTGNGWVYGRGNLEGDKLSFRCRTDYILDGEQFIKCTGNRRWNATKPTCRAPCRKLNARAHSRITKGGFRHKEDIKFQCNPDYYLHGSNVLTCSDGTWNGALPTCLEKCSDPSGNTNANVIGKEFFHGKKVEFVCPRDSILVPASSRRLTCQNGQWRGTIPSCKASCPSLPQLSDGSKSSRSQTHGSSVQFHCSHGHKLVGSARVVCNDGRWSNQMPKCLAICNTIRSIGNGWVYGRGNLEGDKLSFRCRTDYILDGEQFIKCTGNRRWNATKPTCRAPCRKLNARAHSRITKGGFRHNEDMKFECDPDYYLHGRNVLTCSGGTWNGAPPTCLAPCRRFGVQPFRGGYIRRDGYRHNEEVTFGCRDPLVIDGQVTLRCNDGTWNSRLPTCGDPCRKLPPPRNGVIITNGYKHKETLTFGCDQGFQIQALVYTNAPSFSLYDFVSRNLFANFGVQRRRINIRCTKSYKLMQQSIHTLAKISCEVKRRFLQKWVNASFQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSF5</accession>
    <name>A0A7D9DSF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A029269</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001913">
        <property type="protein sequence ID" value="CAB3991768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSF5"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="173" mass="20065" checksum="F68E98A6B8BD22AE" modified="2020-12-02" version="1">MHSDDKFFITTKIKKLLRKRDNAYKQGRMQKFRKLRNRVASEITKAKRHYYVMNIGRLNTNGDARMWWKKVWKLTGKKKPSINLSEQGSDSKLEDSDAANMINTFFADLTNDFPEIQSRWSSYGHSDVLLTVTPESVAKKLLSIQSHKAPGPNDPYLKIIKMFAHSFAIPLLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DVR3</accession>
    <name>A0A7D9DVR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049812</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002346">
        <property type="protein sequence ID" value="CAB3993879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DVR3"/>
    <dbReference type="OrthoDB" id="6003429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="30551" checksum="9CEDD35BEC46B533" modified="2020-12-02" version="1">MADSSNFVSSTKFHQNIPKIWNAKEICNHIASSNLSYDSKRIKWIGTFDILQKFVECDLKLDGKWSSPGGCSKKFTCYNLDISITWYPKKLNTLVFHGEESSGLVDALINVCAEAISEDDGLSNNVCVSAIHSSIATINPAVDEPEQMSNHCIKDFEQTDNHQKVSIEHDFKLGCQCRILAADLEGVKLDIAIMCRDIETKFLAAFNSRDSDSEQISELKHELLKEKEKCSQLEADISILVRGRNREINELKNTITCLENKLKSSDVINESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DWK2</accession>
    <name>A0A7D9DWK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A036533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002193">
        <property type="protein sequence ID" value="CAB3993140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DWK2"/>
    <dbReference type="OrthoDB" id="5983457at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17355" checksum="C51E2CD33823134E" modified="2020-12-02" version="1">MAPPPAAQLTKSHVQQMRDWRMKYSQSVLQNTVRNMSTKDNPGTLPINLYAQAQPASEPLEFSKITENGTQIDTHHANTHNLLHSTGDVVFLASYANSGRMMIYQLQENVSVSTKKARATIFEGDPFNPLIFTEEGVVKVNAKEIPGSPVETVCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DZI7</accession>
    <name>A0A7D9DZI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012249</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002989">
        <property type="protein sequence ID" value="CAB3996967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DZI7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="127"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3996967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="455" mass="52351" checksum="FADE23FA4C32EA0B" modified="2020-12-02" version="1">MDDFQSKQLANPRNSRRTCLVTYSQADLNKFPSRESFGQMLEEQFNTGTGKAKVSHWACCLEEHQDKGVHYHVSLKLTAPKKWLKIKNDIIKKHNVTVHFSDNHDNYIAAYRYVCKTDDHVVHSIGHPDLSEVGSPKTKNSTKAYRESRKRAHKLGEEKDTMPCKQKSSRPKRLTNVEVSDFLVKHKIKRDTELFAVAKVRKDQGQMDMANFILSKSSSVLNELIDKTWKMQTANEDLQRKKKSRMEILCERLSEDCSPGCDKLWLECAIEVLRNNKIHPFVYAAAIRDLLINGRGKFRNLMIIGPANCGKTFMFKPLSSIYNVFSKPANDKYAWVGADSAEVIVLQDFRWSHEMIPWSDLLLLLEGETVKLPAPKNQFFSDVVIEKDTPIFATSKSRIAYAGKFHSSDERETEMMAIRWKVIEFKHQIPESEQKQVSQCVRCFSELALLGEEDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E120</accession>
    <name>A0A7D9E120_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019057</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002823">
        <property type="protein sequence ID" value="CAB3996218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E120"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="16851" checksum="82A43A3923E0B7AB" modified="2020-12-02" version="1">MSDINESYEEILKRMGCDMIFKPGDSMLEDATFYFDFARAMASSLKKHYPWKAMNEWRNRNGGMKEWQSGVWVDNCESFNYLHYCDNVTLELKDEQKLKDDREKKRRMRRAILTFVQAVVENIQNQTILVLLYKDTYFFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E168</accession>
    <name>A0A7D9E168_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A026737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003514">
        <property type="protein sequence ID" value="CAB3999096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E168"/>
    <dbReference type="OrthoDB" id="6021232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF3">
        <property type="entry name" value="MYCBP-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="335" mass="38465" checksum="04CC6C4782B5073E" modified="2020-12-02" version="1">MRQWRLCFSSFLDSLSDEELEHFDSAITVKDEYPESQEFVGLFDKYQHFCLMMRKEDPTFELWSSFLDMMSLLLVFVRATRESDWSVHVAVLRLMMPWYFAYDRTNYSRYLPAYWMEMVNLPESHPSVYHELSQVGAWTVQRHSNHAFASIARDQSIEETLNRDCKTPGGIKGITLNRGAVQRWILAQPERAAISRECEVMAGYHKVERASKELDQTRIRKLEESIMSVISTVKSMINPFENTTGELVAISSGAVAIDAVKDDLLKAEAKGESAAMEFIKERLLVGSNATQTDFHDPIKQQKLKTFADNCTSKKKTSKEIIKDSKVFFARLLVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9Z9</accession>
    <name>A0A7D9E9Z9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A045002</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004861">
        <property type="protein sequence ID" value="CAB4004300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9Z9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="44"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4004300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="102" mass="11504" checksum="C516D841CC04B314" modified="2020-12-02" version="1">MRSSVHFNARRAARSLLLKDNHLEQSRSENDDEIDDGFYEGFESPPGTSQSTSGTSYPPKQETAVLVKMFQYFYRHSAKRIPVNIPSNYARSGHISDLPGPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGZ0</accession>
    <name>A0A7D9EGZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A088299</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006755">
        <property type="protein sequence ID" value="CAB4010340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGZ0"/>
    <dbReference type="OrthoDB" id="9049579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051022">
        <property type="entry name" value="Notch_Cell-Fate_Det"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24049">
        <property type="entry name" value="CRUMBS FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13385">
        <property type="entry name" value="Laminin_G_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="68"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="4">
        <location>
            <begin position="106"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4010340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="29552" checksum="E19968C29416F431" modified="2020-12-02" version="1" fragment="single">PSTLSTQPHTQNDPESPDSTTEHENGLGFVTYKSVYINQFLDPCVSNPCTNAESCVKDVQLGYRCQNCHSQYHGPKCEEHVDPCSSNPCQNGGKCISTMTSWRCVCPFPFHHTVCTRITRAYQFDLNGTADYPYASVPDKKYNRFTLNFLFKTAEQNASYLIHYAPDKSSQTERLSVWRVGNTFFVELWKDYVYTFTFPLSYPVNDKNWHTVTIVLESNAELRFYLDGVTRESPKLTKGNPGSSLYVLRAGTLYIGYFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGZ2</accession>
    <name>A0A7D9EGZ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A013305</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006056">
        <property type="protein sequence ID" value="CAB4008208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGZ2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019894">
        <property type="term" value="F:kinesin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007030">
        <property type="term" value="P:Golgi organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032418">
        <property type="term" value="P:lysosome localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032880">
        <property type="term" value="P:regulation of protein localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053015">
        <property type="entry name" value="PH_domain-containing_M2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057288">
        <property type="entry name" value="PH_PLEKHM2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46556">
        <property type="entry name" value="PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46556:SF1">
        <property type="entry name" value="PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23142">
        <property type="entry name" value="PH_PLEKHM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4008208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="596" mass="67214" checksum="98C56B791F3F4A17" modified="2020-12-02" version="1">MQSFPDREQNDINNRDVTTPPETENHGTILADEGVLDQTDDMRDHLEYDIIGIDDTDGGTGSKMLMSEGSYLDSVDWLSIKKPTLSENGTASHKGRSNCGDSFDEFCHNNDRKSTDSNDIINESTISLVEAELADDTLPKVNHNPVPAPQGFSLAEYEGIVLAGFPRRPGLSETLGTTSDIILKQPAIEKLSLSIFENKDEKFHRFVKGFTGFHYGQLHEVLLLLTNKAVYFLRQQTDVGFTIEHSINFQELKHIEIGVNCQHLAFVAKNEKYSFSTANEAVTRSLVSDISSLVLRGLSSSAQLTRLISSTAVQGQQAIKKWLRRQALQDQTLDMEVLCFSLVHWMCFSGPGSELDTVRYQIVKEGYLDCKSKYLGMVSHWETNYFALTGRGLFHYARQGDKEPKMIYELNASNCGGCRRVSDEQQKYAFEIISDDGQSVVILSTSTEDQTSDWITKLCQIVAGSSEFLYTTLCPAARALPCCAAVTKQHIVTFHAHINGDYRFLSSFFIQDITQILVDNEVRNYCILKFESDHEGMWFFSFATEYELSKFERVVAEAWKDNLQADLQFYIIGEGPTRQRARDMSQYNQTMLHGTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HEK2</accession>
    <name>A0A7D9HEK2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011709</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000308">
        <property type="protein sequence ID" value="CAB3980630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HEK2"/>
    <dbReference type="OrthoDB" id="3199698at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="183" mass="20698" checksum="142B38760C42DC62" modified="2020-12-02" version="1">MAEATDINTQSNVTNNASLEHLSGNISDEEALLFSLSLTDNNAEEIEREMDLAIADIQECTTGFLCVDCNEICKSKGGLTLHRRKKHVDGVFYSASSTEPGEPKPAKRDWNKLAKENLSCKSLCDLVEETKAELTQNNLYPEEFVKEIKDSPQFTCSEKDDLYKEIIKLFKDYAKERQPRKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HHM7</accession>
    <name>A0A7D9HHM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endoplasmic reticulum resident 29-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A068520</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000534">
        <property type="protein sequence ID" value="CAB3982702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HHM7"/>
    <dbReference type="OrthoDB" id="417262at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005788">
        <property type="term" value="C:endoplasmic reticulum lumen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00238">
        <property type="entry name" value="ERp29c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.30.10:FF:000133">
        <property type="entry name" value="Endoplasmic reticulum resident protein 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1150.12">
        <property type="entry name" value="Endoplasmic reticulum resident protein 29, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016855">
        <property type="entry name" value="ERp29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011679">
        <property type="entry name" value="ERp29_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036356">
        <property type="entry name" value="ERp29_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012883">
        <property type="entry name" value="ERp29_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12211">
        <property type="entry name" value="ENDOPLASMIC RETICULUM PROTEIN ERP29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12211:SF0">
        <property type="entry name" value="ENDOPLASMIC RETICULUM RESIDENT PROTEIN 29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07749">
        <property type="entry name" value="ERp29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07912">
        <property type="entry name" value="ERp29_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47933">
        <property type="entry name" value="ERP29 C domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28439" checksum="CF239656876A665E" modified="2020-12-02" version="1">MESLQSFYILVLLGNIFPSAVIAARGVVPLDSLTFDKVIRNHKVVLVKFDKQYAYGEKEDEFKKFAEQAATQSDLLVAEVGVSEYGEKENDDLRERFGVSKDDYPVFKLFKQGQKEAIDYTQSVTSEDLARFVRLESGLWLGKPNTLESFDKLVVEFLKADQDKYDDFIAKAEEAMNVVEEKDQLTAKMYVSTMKKIKEKGVEFVSSETARVNKLLNEKVSDAKKAMFKSRLDILASFTDYLKKDKDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HIL2</accession>
    <name>A0A7D9HIL2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integrase recombinase xerD-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064953</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000915">
        <property type="protein sequence ID" value="CAB3985742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HIL2"/>
    <dbReference type="OrthoDB" id="5988579at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1191" mass="136849" checksum="9848AB939A84E319" modified="2020-12-02" version="1">MSKKSASALRRLEAHNESPKNPESSSRHRQSRRESRSRDRSSRGSSRHSNENEEERMPNWAKQLLDAHKESDQRLQTLETEIKAKGKQTSKKRERSPLPEFKFKRNKIQYDLNKSVLEKIETALDVSDDEERGAALNEGKELLIQRNKHIKLAEKYGWETVDCYIEEPLASDSDDDKKIRRAIKESKALKDEKRKIARVVVKPQSAHSRLGPSVSYQRNFSDINSRQSYGQSYGQNEDISPAFADLPSPTTSPVVRVSLNEENCSNADSYNVYNVEFLTNHSLQLNNCVFVAPKQPSSGVKGRLKENIAFWEQIKASNWVLRVIREGYALPLIDIPEKRMLDNHRSAIKCAEFVNSEINKLLHCGCIKEVSSDSVYIVSPLSVASHNGKDRLILDLRYLNSFLRVLRFQYEDLRTFRDIFSPGDWFFKFDYKSGYHHVDIYPEHCRYLAFSWGKGVNQRYFVFTVLPFGLATAPLVFTKIQRALLKHWRSQGIRIFTYLDDGIGGHSSIQQARLVSNRVRSDVDQSGFIWHPDKSCWEPTQCDEVLGFIVNLAEGYFRVPERRITKLNKLLDNIKSRNFNTTAFEIAKLTGTIISMGLALGPIARLWTRGLYRNLMSTASWSESVQLDNEAIKEVAFWSDSFEECHGQKIWLSDPQPEILTYSDASDIGWGGYCVQVKGQIAKGAWTLEESMQSSTWRELRGTYLVLLSYAEQLQGREIRHRTDNRNVETVLQIGSSSKLIHDIVIAIYKLCRQWAIRLYPEWVPRELNKEADYLSRQMDQDDYMLNPTYFAALDILWGPHTVDRFSSFKTRQIPRFCSRWLNPCTEGVDAFTTSWKGENNWIFPPPFLIPKVISHMHNNCEDGSSRKVPITRTLHDPELNALASDIPKIILRDRAPQTVKKYANAFHKWKSWAKSKGLQVLPATGYEFALYLASLIKNAKSMATIYAAVYGISWAHQKMAMVSPTEHPLIKQMIEGSKRIIGTAPINRKQPLGVEHVKKLVNKFGVGDLSNLQITCLVALGFSGFLRWDDLSRLRKEDFSFQEDCMRVFLHKRKNDQYREGSWILIARTSNLTCPVQLMEKFFRRGGHRPSDFVFRKISHTTTGMKLRKEQMTYSRARELFSKQLKGIGLDPSLYGLHSLRSGGTTEAAAWGISDRLIQRHGGWRSEVSMNMYIKETKNALLRVSKSLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNA7</accession>
    <name>A0A7D9HNA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040613</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000929">
        <property type="protein sequence ID" value="CAB3985828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNA7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15925" checksum="F0C3F57EACCAF6C5" modified="2020-12-02" version="1">MRKRAHVTEPFEQHDSGFMEPMQMFKTFPHNDTFVDNRVFTLNANPAETTSDVYTFVHHKQDYAWKTKEIFFNNQVVNTISTQENELAYIDHLLCEVPSGYLPEKEVNLAIHDTPGHFDSIVHLNDATEDTLVKKVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNH8</accession>
    <name>A0A7D9HNH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase core domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063382</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001125">
        <property type="protein sequence ID" value="CAB3987138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNH8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="244" mass="28597" checksum="004A2E6D3F0B5CA7" modified="2020-12-02" version="1">MKDAVSNILEQFNNRFSKYPKFAQFDQGTEFYNKDVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWKYFYSASTYKWLDVLQDLTDNYNSSVNRSIKTTPDSVNDSNWTEVWKTLFSHNLGKPSEPKFAVGESVRISKYKSVFTKGYEANFTEELFTVTEVYRGHPNTYTIKDSADEPIIGRFYEQELYSAEGREPDFRIEKVLRRRTVKGKKMALVKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQ72</accession>
    <name>A0A7D9HQ72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin- ligase NRDP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A052299</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001143">
        <property type="protein sequence ID" value="CAB3987245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQ72"/>
    <dbReference type="OrthoDB" id="7923847at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051746">
        <property type="entry name" value="Kelch_domain_containing_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46260:SF3">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24681">
        <property type="entry name" value="Kelch_KLHDC2_KLHL20_DRC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00504">
        <property type="entry name" value="Ubox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3987245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="530" mass="59009" checksum="1C9F1D3F8DD21219" modified="2020-12-02" version="1">MASAEHGYEDERFNHSVSAHFHCGICYNVLKEPVTCQRNEHYYCRACITEHLKNSPTCPTCQEGLSPETITQAPRILRNCLDELSIRCDNSDRGCQEIVQLAQLQDHVDVCGFAPVVCPNEGCLVKVNRQDLAGHQQALCQFRKCCDCSELKKVVHEINANTNDVNNQMKDLKSLKDINESLVAVKEEVSKTREDTNQVLHRLEALEEQVRATKETQEAMKEAQSSNNSGETYQPQNILVAGGRRTDFGEMKLVEIFNLSGMSWSPLQQMNESRVGASVFMSNGEITVAGGNTNHGPTETLTKISISQDMKSASWSEVAIRLPTMLYGHTSVLYDGTLAHIGGCNKNKNVSKSIYRENVVRAPGYGFLPYSMPDPRCFHGTEAFDDKAFIFGGQSSAERNSCLDSVISLGLKERQTKQLASLPYPVSEMATVRWGDNVILIGGADQYGKPLATVVIYNIKTERWHILPSMNEKRKACSAVVVQDMIIVMGGRTQNNTCLCSVECFTFKNYSWQNFPAMITARERAVAVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HSW6</accession>
    <name>A0A7D9HSW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc finger MYM-type 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A025489</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002052">
        <property type="protein sequence ID" value="CAB3992437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HSW6"/>
    <dbReference type="OrthoDB" id="6145258at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021893">
        <property type="entry name" value="ZMYM2-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF12">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12012">
        <property type="entry name" value="DUF3504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0832">Ubl conjugation</keyword>
    <feature type="domain" description="ZMYM2-like/QRICH1 C-terminal" evidence="5">
        <location>
            <begin position="21"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3992437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="242" mass="27208" checksum="69EBDB609A2160CB" modified="2020-12-02" version="1">MKCSAQNNVGIRPKQAEVIPVEVERGLWEQGFLAINDPESLLRTVFYLIGLNFGLRAGSEHRLLSMSSFSFHSDNRGKEYLLYSEGVSKTFQGGLKHRKVAPRTGKAYANVECADKCIVNIVKHYISRCPKEGLRKAFCLKPLQNYERKQIWFSSVPIGHNKLQGMVKCIMEKAGVNGHFTNHSLRATAVSRLFREGVDDKLIKGVTGHRSEALDCYKRGAACKCLENRARYRVREGCNGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HW04</accession>
    <name>A0A7D9HW04_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013478</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002212">
        <property type="protein sequence ID" value="CAB3993228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HW04"/>
    <dbReference type="OrthoDB" id="5986514at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="16119" checksum="2C42AB840D92C430" modified="2020-12-02" version="1">MSSSDTHQTSRTSTNDETTRWTLAETFIRFCGPLPTGDYLLVVIDEYSRYPEVEIPKSTSAKATIPKFDKILSTHGIPIEIKTDNGPPFNSQEFKEFLEELGFSHRKITPLWPKANAEAERFMRTLSKAIITAHTEQLNWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I039</accession>
    <name>A0A7D9I039_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A063924</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002378">
        <property type="protein sequence ID" value="CAB3994034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I039"/>
    <dbReference type="OrthoDB" id="6003429at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="285"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="178"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="302"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="351"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3994034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="479" mass="54161" checksum="7016200E71CB5B96" modified="2020-12-02" version="1">MPGNHFSFFEDIQEQSTLITSTPFKQSNLLKIGEELVWKGPYESLKLFVKSDLGIDGQWKSTGGEVKKFTSKSYTLKWHGKTKQKLVVIQDDENESLQEKLVKSATLGNFKGHYVGQRSETIGNKNTLEGVQKSTLLSNDDKDKDKNKAENQTVAVNFPTEVPLAENDLKFTNSVYCCREVVSQLKRIEGDIQQLKNRTDSYEGKENSRPCKFNTCESEKANLRNNLEEANNIIKDLRAKVEYLENEKVNLATALALQQKDYQACLNNLNQPNNITAEMSNNFETVQKTKSSDRKQQADIIPSSSHMLNIENRYQTLSDTLDNESQTESTVPHNLSKRYETKPVNNQEESTGEHQNRQQNPKTREIGSDIIVIGDSIIKNIQPRKLSRKKVHKYTFPGKTAEEIEKEINFDSLKAIPSHVIVHAGTNNLPLESASECAQKIEKLAAKVKSQFPYSKIGLSGLTARRDVAMSEKIDEVNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I0Y5</accession>
    <name>A0A7D9I0Y5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">HEG-like 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A046430</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002548">
        <property type="protein sequence ID" value="CAB3994834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I0Y5"/>
    <dbReference type="OrthoDB" id="5956155at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="575"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="582"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3994834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="685" mass="77501" checksum="FC4A0959FEBD44C8" modified="2020-12-02" version="1" fragment="single">PQTSSQSESNEQSSSSSKQPEPKGRFGRVLNFKQYYEKKTGTGRQFPSTKAKKGKGKGTEVEAKSRNQEVVIFIGIMKWSEEYLKLKPMRGKRLALKVCKEDPYKVLCEKALEKWKAYNPDLYSENHTYVLLLDSGKEAIFLPGPTKEFFSLGRYQEEIGKDFKRITMYLCTSDDFLHSERADRESPMENEDSDSAQEFNIQPKRLKEDCFNCEVVDWDLTEFDDTADLINNDEAFAIELQRQLQGESSSQNSFQTSVTHNLLDQTVSITNDTSDSNQLEGTSGISTPHDYSTITDVVQALEKSVNKEKQFFITVRRRTPLPRVLNLWRYEAKKQGVHHELRIKFLEEDGIDSGALTREFFTDVVPAIGDMLFPNGTPVDSTHHVQNGNFRTSGEIVASSLANGGPPPCFMDEKAFQSLIHPEMNALDMDSEDCMTATEKQVIDSVKINVNLHRDSVLEHGYTGPVDEKHIDDIVRSMKVSLVNKRLLYLREFKEGLSLFGLSTILDDYPQVCEPLFVQNRLENVDATYLFSLMQPVFSPVGSSRRQLEETLMDNFQDLLMALDGGEISGYTTPPVWNDSENQGEEVAEAEAESTEETSADLSSAGVMKWLTGQKHRQLNGEKIKIQAKFDHECLIRNPAHSLCFPLVGACGRVITFPVSHMKNYQTFKDVFLLGFCNGQDFAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I8U8</accession>
    <name>A0A7D9I8U8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Inhibitor of growth 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A073698</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ING family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004041">
        <property type="protein sequence ID" value="CAB4001245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I8U8"/>
    <dbReference type="OrthoDB" id="5411773at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028651">
        <property type="entry name" value="ING_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059153">
        <property type="entry name" value="NSD_PHD-1st"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10333">
        <property type="entry name" value="INHIBITOR OF GROWTH PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23011">
        <property type="entry name" value="PHD-1st_NSD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="200"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="210"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4001245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="221" mass="24284" checksum="FF8DDEFCDB3AA73B" modified="2020-12-02" version="1">MLLQGGKQGQNKQPLQDVRRKPALRSTTSSPKMCCVCRQGEFGKMIGCDNPICTVKWFHMECVGLSSAPDGDWICTICKGVDMFCLCGQGEYGDMIACDNPTCPVEWFHMGCVGLSSIPDGDWICTFCKADMADIKQWCICGIFKNVVSKADLTHKTLCLFCANSSLWDISPINARRGDGHRFLSPVMLLHNAAAHANEGRPASPVLSHPDIERMMPHPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I9K1</accession>
    <name>A0A7D9I9K1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035328</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004159">
        <property type="protein sequence ID" value="CAB4001714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I9K1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4001714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="299" mass="34599" checksum="EECCC1501BE1ECF9" modified="2020-12-02" version="1" fragment="single">LISVFSDWYDRGYVSADMIVDETNPRSSSVQDIDRIEQTLIRYYVVLKPDAYLKNLIEKVESVTKRMRWKANFFLKGSTTQNQSNLFGLSSNKSPPSIPLLKPFEDDLIKLIENLQFNKKIRKRITHFKNRPEKSDSNSPILDGNLDQLAMLACCSSPHVVKRALDALLNEMFLSISDSTRIRCGNILQAEKILRASFQQYMKVDHFKAKSHRMTTYAWLITLVLLKCSKQDFIEIQPEMREFDRILDALQNDRNTADEILFDTVLMLPGKVLNELFSRVEKKTQENRYASASKGVKTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IA07</accession>
    <name>A0A7D9IA07_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Fibrillin-2-like isoform X48</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A074841</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004421">
        <property type="protein sequence ID" value="CAB4002688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IA07"/>
    <dbReference type="OrthoDB" id="5983152at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008201">
        <property type="term" value="F:heparin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048513">
        <property type="term" value="P:animal organ development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048731">
        <property type="term" value="P:system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000202">
        <property type="entry name" value="Multiple epidermal growth factor-like domains 8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000653">
        <property type="entry name" value="Putative Fibrillin-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051586">
        <property type="entry name" value="PKC-binding_NELL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24042:SF5">
        <property type="entry name" value="EGF-LIKE CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24042">
        <property type="entry name" value="NEL HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 11" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4002688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="295" mass="31578" checksum="F07EFB578AD8B9B7" modified="2020-12-02" version="1" fragment="single">IDECVDRSHDCHYNATCTDTDGSFICSCNSGFSGNGTYCQDVDECALGTDNCHDNATCNNTDGSFECSCNEGYSGNGTICENIDECVDRSHVCHYNATCTDTDGSFICSCNSGFSGNGIYCEDVDECAFGTDNCHDNAICNNIDGSFECSCNDGYSGNGISCENIDECLDRSHDCHYNATCTDTDGSFNCSCNSGFSGNGTYCQDVDECACGTDNCRDNATCNNTDGSFECICSDGYSWNGTRCENIDECVDRSHDCHSNATCTDTDGSFICSCNSGFSGNGTYCQGWFQNTCIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IA79</accession>
    <name>A0A7D9IA79_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Low-density lipo receptor-related 6 isoform X3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A027249</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endomembrane system</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004796">
        <property type="protein sequence ID" value="CAB4004058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IA79"/>
    <dbReference type="OrthoDB" id="72419at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00112">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.400.10:FF:000034">
        <property type="entry name" value="Low-density lipoprotein receptor-related protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.400.10">
        <property type="entry name" value="Low-density Lipoprotein Receptor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036055">
        <property type="entry name" value="LDL_receptor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050685">
        <property type="entry name" value="LDLR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023415">
        <property type="entry name" value="LDLR_class-A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002172">
        <property type="entry name" value="LDrepeatLR_classA_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24270">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24270:SF62">
        <property type="entry name" value="LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00057">
        <property type="entry name" value="Ldl_recept_a"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00261">
        <property type="entry name" value="LDLRECEPTOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00192">
        <property type="entry name" value="LDLa"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57424">
        <property type="entry name" value="LDL receptor-like module"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01209">
        <property type="entry name" value="LDLRA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50068">
        <property type="entry name" value="LDLRA_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8 10" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="375"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="375"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="45"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="64"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="82"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="89"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="10">
        <location>
            <begin position="126"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4004058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="419" mass="46072" checksum="71FD6D29150CF7A0" modified="2020-12-02" version="1" fragment="single">NHPCIKNNSGCSHVCYVSHGQAVCSCPKYLNLGDNKRTCEFPPTCGPNNFRCKNSECVHIAWRCDGAFECPDGSDEENCPPCKENEFQCDNKQCVPKRDQCDGVPRCNDDSDSCDTTCDKEDNFVCSDDKCIPAIWKCDGVGDCSDRSDEDPRLCGNATEAATPNISGGESSHRDKIVIVFTCAAAIIFVLIVLYFFKRAKLKQDSPYYIQTRTTCHESSFTGDSDGTQCYPKGLITLNASISLSSNPTDTGDTFYNRDDLTGQSQSAIGQTYHRSLTNPPPSPVTDRSHFTSISGKYYNTPSPSTCELHMYHRPVMPNYTTPVTTDAESSVSKYINYKRKQTSSAYSSVSDEDYELGEEDLYAPPPTICTNYFSEGLQGTNYFSDDENPPPSPSSEVGFIQEPDPPPPSPVTDSPSVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJ59</accession>
    <name>A0A7D9IJ59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Leucine-rich repeat-containing 58</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028896</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007232">
        <property type="protein sequence ID" value="CAB4011677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJ59"/>
    <dbReference type="OrthoDB" id="1053178at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050216">
        <property type="entry name" value="LRR_domain-containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48051">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48051:SF53">
        <property type="entry name" value="LEUCINE RICH REPEAT CONTAINING 58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00364">
        <property type="entry name" value="LRR_BAC"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="1">
        <location>
            <begin position="168"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="352" mass="39919" checksum="00EB8C10B6F48FF5" modified="2020-12-02" version="1">MDVNRLKKTEDMLDLSCKGIDVFPTISRLRVQPYMFTHLYLSGNCMKFITDDEISYFPNLITLDLSSNLLECLPCGLCKLTKLKTLLVRNNVLCELPKCMSSSQSLEILNISGNKLEQFPVQVLQLLQLKQLHLGGNRIHNIPKEITQLTSLEYLYLGGNKLTQLPVEMGKLTNLKSLNLCDNQITLLPKELAKLHQLESLSLHNNNLTVLPIAIVKLKNLQAISVRGNPLVIRFVRSQSSSLPSLQELAGKTIKNNRIPYSRQNLPAFLVKYLDSARKCVNPMCRGVFFDSCVRHIKFVDFCGKYRLPFEQFLCSPHDNEQWEDLASCSSTSSDDDDSNVEPSWMKKILLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IJG6</accession>
    <name>A0A7D9IJG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A066177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007312">
        <property type="protein sequence ID" value="CAB4011916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IJG6"/>
    <dbReference type="OrthoDB" id="6103199at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="20076" checksum="24E155D14D8E027E" modified="2020-12-02" version="1">MAEMSLGDSPSCLIHFEGKSGELCKLTTYTLVKIKEYCNKWVNLDGELKEIASKLVNVVRQWPDIEPELMPTGTGDLYYHKECYVRFCDKSKVARAKTRTSKIKEKSCATEKGKQSDQDNEQGEHLQPMRSSARIAPIISGTASVERRTAHVMPELCIIGKRKDAYIMDRVGTVSFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IKL7</accession>
    <name>A0A7D9IKL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A063794</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006058">
        <property type="protein sequence ID" value="CAB4008219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IKL7"/>
    <dbReference type="OrthoDB" id="5981100at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="424"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="507"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="424"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4008219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="550" mass="63082" checksum="1D8FB4C695920460" modified="2020-12-02" version="1" fragment="single">EGHPVIYASRSLTNAEQHYAQIEKELLAIVFACERFNQFIYGTQVTVHSDHKPLEAIIAKPLSQAPPRIQRLLIRLQKYHPTVKYVPGKFLFIADTLSRAYLPEEGEQQELNEDIEVMVHSMVTAIPASPEKMAELKEETANDETLQQLKQQMVQGWPDRKHEIPQNLATYWNIRHELSEAEGLIFKDHQLVIPTAMRSNMLNLIHESHLGIEKCKARARAILFWPGMSKDIYEKVSKCATCATYRRRNQKEPMIAHPIPERPWQKLGTDLCECKGKNYLVVVDYYSKFIETALLPNKTAGTVIRHLKSIFARHGIPEELVSDNMPFNNKEFDEFAKEWRFKQTTSSPTYAQSNGMSEKAVQTVKRILKKADDPYVGLMEYRNTPVTGMTYSPSQLLMSRTTRTKIPISKELLLPAVPINAQQQLEQRQNQQKQNYDKSTKPLPPLEIGENIHLRQDSIWAPATVSGLAPAPRSYIVTTSDGQQYRRNRRDLLKTNIPPSTIIEQTEDVGEEQPTIIPQPPDLDLQNPPNQGRPMRTTALPIKYRDYVMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IMF6</accession>
    <name>A0A7D9IMF6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051822</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007674">
        <property type="protein sequence ID" value="CAB4012896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IMF6"/>
    <dbReference type="OrthoDB" id="5984638at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="10125" checksum="7E2F1148CCD5D9AB" modified="2020-12-02" version="1" fragment="single">EGIKTHALLDTGAGSSYASTKIINALKKRPKEVKTKRIEMMPPQSTTRIEICSANLKSLDHKFDMNVELSNVDKPELMMVKNPHYAKLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9INI1</accession>
    <name>A0A7D9INI1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A075205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006570">
        <property type="protein sequence ID" value="CAB4009775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9INI1"/>
    <dbReference type="OrthoDB" id="5960337at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="16583" checksum="8A02D23BFC6706A8" modified="2020-12-02" version="1" fragment="single">MSLLFFLLACVSLRYSNAWFGGNDCTDQSDCVSCTNHKTWSGANCCWCPKDMACHAQGSLVNKCSRTENIVNLDDCDKIVHAKYDKNLAHKMIYLCALAYSDDVAKYIPKASEVDTFHLVKQVTKPCSGGALCSGFVAVSHAEKAIAIVFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IPP5</accession>
    <name>A0A7D9IPP5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integrator complex subunit 6 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063766</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008840">
        <property type="protein sequence ID" value="CAB4015775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IPP5"/>
    <dbReference type="OrthoDB" id="9449012at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032039">
        <property type="term" value="C:integrator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034472">
        <property type="term" value="P:snRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051113">
        <property type="entry name" value="Integrator_subunit6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12957">
        <property type="entry name" value="DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12957:SF2">
        <property type="entry name" value="INTEGRATOR COMPLEX SUBUNIT 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="150"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="191" mass="20474" checksum="D95B9F1F77E5BAC1" modified="2020-12-02" version="1">METPSSPESGACTDNLIFKGRNPFYLDPAMVICITDGGKLTSSDGVNQTLQLPIDPSTPGYDLTKEPFRWDQRLFSLLLKFPGSPHGFDKQAGVIADVANEYLITPMCEVTGGRSYIITTPKSLSNILDSLVQKFQMGVVINFEKIGGPDKPAEGTANATSGTANQAVETENEGKPNHLNNVVKPANDLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IW46</accession>
    <name>A0A7D9IW46_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008339">
        <property type="protein sequence ID" value="CAB4014518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IW46"/>
    <dbReference type="OrthoDB" id="5989324at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="722"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="754"/>
            <end position="765"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4014518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="983" mass="110881" checksum="D61297840114D614" modified="2020-12-02" version="1">MSRRTKNSMSTLSEADVENFVAELSSTDNDKEHVCPTEMSDHKSEDDSETSQRKLNEHMVNVIDETEGKAEAEVNTKRLNSDVYKSYEEEIAKIMTIINHMKSKHDEDNRNAIARELASGAKIKTLQDVNNTMAAEIAYLNHTVSELTTDNGNIKIILDIKQNEWVKVSGKPSTPKENEKKLPSTKTLNSFEVLVDENDENISSSELASTEKSKDNINSQILDYRSTNNSKFQNLKTNQKSQAHGHINKKKNQVLSQKDRLKRKAIITNLEIYWLNYKTARNKVNIQLKNAKKDYYSTKIAGQKHNPKEAWKTINNILGRQSKPTVVNELKVGENILTNTQDIAEGFKDYFSNIGPDLASKIDSTNFNYETYVENAKSEFAAFQPVTVQNVYQLLHCLSSNKATGVDKISCKIIKIAAPVISDSLTYIFNQAITLSIFPDEWKTARVIPLYKNGQRNMPGNYRPISVLPTISKIMERILYDQLYDYFTKFGHLSDCQFGFRKFHSTTTALLDCTNEWYMNLDRKKFNLVILIDLKKAFDTVDHQILLKKLELYGVKGQALSFVQSYISNRKQKCQIQNSLSSEKLIKCGVPQGSILGPLFFLLYINDLPQCLYKTKPRLFADDTNLTASGDSITDLEAAVNSDLENLRKWLIANKLSLNVAKTEFMLIGSKHMIRSISDLQLNVKIENESVKQVHESITLGVTIDQHLSWKSNTENICKKITSESSKSASDDNGDGSGMLTGPINDPSRELSKSLGNESLITPESSKTKSDIKDDGSILLIGDSIIKNIHPRKLSRRKVNKHSFPGKTAEEIISEVKNIKSDSPSHIILHAGTNNLPVDNPSVCIKKIESLVMNINKKFPNSTIGISSIMLRRDLNLGEQVTKVNDGLQVFCTKNAFKFIDNWNLDSSCLNGSLLHLNAKGSAYLVANFIKFLRGNTPFVPTTSPKQRRNQDFLNKTARLSFLEDILSMMLSPLRPNNRSRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IWG5</accession>
    <name>A0A7D9IWG5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053831</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008642">
        <property type="protein sequence ID" value="CAB4015249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IWG5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15651" checksum="4CC321AC779B5640" modified="2020-12-02" version="1" fragment="single">MEHLKLSENFNAWSSSWVANRRLRKSSAYRQCQNKLLQDEINAKHARIRILSAQVTTTHANLASLVSTLDFIHLKNISDRENSKKLNQHQRVQDRKLFRLNAEQKHSNTIDPNAVVFNFSNRLITDKEKEILSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IZ52</accession>
    <name>A0A7D9IZ52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nuclear factor interleukin-3-regulated</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085258</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009209">
        <property type="protein sequence ID" value="CAB4016659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IZ52"/>
    <dbReference type="OrthoDB" id="10659016at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004827">
        <property type="entry name" value="bZIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046347">
        <property type="entry name" value="bZIP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07716">
        <property type="entry name" value="bZIP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57959">
        <property type="entry name" value="Leucine zipper domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50217">
        <property type="entry name" value="BZIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="265" mass="31307" checksum="1397A4601955EC3D" modified="2020-12-02" version="1">MENYTLFDDFHSNQRNIYPECRTDCFMTPELPEFDLLDAMLHESYFGMEHVNDKYMDSLISAFEDEFIYENRYHVKHPAINYLDISKENSNLLGENFQGFREKNKEFNTNLPNLLFPVSHSQQYLQSKEITLALLATSLDKENISENLKRGLGVEEDKMIPFPNNDMTNNTESQYRLSKQCVLEAEGNKLQTAKRSLKRVHEGRKGERYWKQRMKNNAAAKKSRVAKKNRFVLMEKRIKELEIENAEKKEYLRTLEQKVLERGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J2B7</accession>
    <name>A0A7D9J2B7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062564</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010632">
        <property type="protein sequence ID" value="CAB4019802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J2B7"/>
    <dbReference type="OrthoDB" id="2717295at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="23822" checksum="0788F6F9B571E304" modified="2020-12-02" version="1" fragment="single">MVYMLLSRINERKASGLDNIPNKLIKIAAEIISPSLIEIFARSISTGIFPSEWKTVRVSPIFEKGKKNDPNNYRQISVVPAVAKIFEKVIFEQVYNYLNTNHLLTHCQSGLSSLHSTLTALLKDTSNWSVNTDSGLLNGVIFIDLKKAFDTIDHDILLRKLQIYGVDQSSLKWFQSYLSGRSQKCNENGCLSSSVPVAYGVPQGSNLEPLLFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J2Z6</accession>
    <name>A0A7D9J2Z6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011144">
        <property type="protein sequence ID" value="CAB4020824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J2Z6"/>
    <dbReference type="OrthoDB" id="416454at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="215" mass="24747" checksum="587115826B0552CB" modified="2020-12-02" version="1">MGENLAPVTEVKDLGMLLDSHLTYDKHIQALSSSCISKLRQIGRVKHNFDQSTLVTIIDTLVMSKINYCSTVWSNTSDGNIKKIQLIKNCAARLITGVHKYDHISPTLNALGWLSIKEHLLYRDALLTFKCMNDKAPQYLCDNFEPRNRIHNRDTRRNGDLDIPKYRTSIGQRSFKYRGTKIWNGLDTELKSISDLNNFKTKLKTILIEKRFPSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J659</accession>
    <name>A0A7D9J659_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transposon Ty3-G Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A040550</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012071">
        <property type="protein sequence ID" value="CAB4022642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J659"/>
    <dbReference type="OrthoDB" id="5988588at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF8">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4022642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="589" mass="67613" checksum="C7557263179F353D" modified="2020-12-02" version="1">MLVREKPDVRIRISSRTLNKAVRKPVYTIPTIEEKLPFLTSAKVFTVVDVSEAFHNIELDYEPSLLTTFKGPNIRDRYKRMPFVISSGPEEYQRRQQEFLEGLDGVINIADDICVLGRGDTKEEANIDHDKNLIALLDKCKEQDLRLTVKKMQFKSTTVTFMGHKLTDQGICPDPGKVSAAREMPRPLDKVGVQHSQEKAFNAAKDLIASSTNLRYYDVKLPVTLQVDASDEAIGGVLIQEEKPVCFTSHTLTDTEKRYAQIEKECLAIMTSMKKWHQYLFGKHDIIVQTDHQPLETTFKKPLGKASRRLQRMMLQLQQYNFEVVYKRGKELYVADTSLQAALKENCAVELESEMVFRVELEQMGLKRAMMSDCTLNRMKEETRKDQTLKCLLETTHPVIVPTVLRKEMLEKIHKSHQVADNSIRRAREALFWSGMSANIRQMSEARGNCAQFQTEQPREPMKSHEIFKLLWSRISLDLCQLSGKNYLVMVDHYSDFIELDHLKNTTANSVIKVMKKNFARHGIPSECVSDNGPQFDSSEYRSFAREYGFTPVKSSPYYSQGNGKAESALKVAKNILKNRTTKILTWNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8S3</accession>
    <name>A0A7D9J8S3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Potassium sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A021459</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013118">
        <property type="protein sequence ID" value="CAB4024589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8S3"/>
    <dbReference type="OrthoDB" id="421226at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098855">
        <property type="term" value="C:HCN channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005249">
        <property type="term" value="F:voltage-gated potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003254">
        <property type="term" value="P:regulation of membrane depolarization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035725">
        <property type="term" value="P:sodium ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051413">
        <property type="entry name" value="K/Na_HCN_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45689">
        <property type="entry name" value="I[[H]] CHANNEL, ISOFORM E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45689:SF5">
        <property type="entry name" value="I[[H]] CHANNEL, ISOFORM E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="cAMP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="91" mass="10214" checksum="09A4083EB5F7CD07" modified="2020-12-02" version="1" fragment="single">KVLNDGSYFGEICLLTNARRIATVIATSTCDTFVLSTSDFHDVLEDYPEMRAQMEKVAEERLNYIKKYHNRKGSVSPLMGSISESAGHQQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JBL2</accession>
    <name>A0A7D9JBL2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">COP9 signalosome complex subunit 6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A037936</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the peptidase M67A family. CSN6 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014198">
        <property type="protein sequence ID" value="CAB4026437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JBL2"/>
    <dbReference type="OrthoDB" id="1378at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008180">
        <property type="term" value="C:COP9 signalosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000338">
        <property type="term" value="P:protein deneddylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08063">
        <property type="entry name" value="MPN_CSN6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024969">
        <property type="entry name" value="EIF3F/CSN6-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000555">
        <property type="entry name" value="JAMM/MPN+_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033859">
        <property type="entry name" value="MPN_CSN6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10540:SF8">
        <property type="entry name" value="COP9 SIGNALOSOME COMPLEX SUBUNIT 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10540">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01398">
        <property type="entry name" value="JAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13012">
        <property type="entry name" value="MitMem_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0736">Signalosome</keyword>
    <feature type="domain" description="JAB1/MPN/MOV34 metalloenzyme" evidence="4">
        <location>
            <begin position="2"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="EIF3F/CSN6-like C-terminal" evidence="5">
        <location>
            <begin position="115"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU367006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4026437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="25312" checksum="04A34626C62C8473" modified="2020-12-02" version="1" fragment="single">MEILNSFELQYDIIDSDVIINTDYYHAKAEQFSQVFKDLDFLGWYTTGNTANETDLKVHQQMCHINESPVLLKLNPIAGRSNELPINMYESVIDVEDGKTRMLFIELPFTLATEEAERIGVDHVAKISSTGIVEGSASEHLLSIYNSIKMLHSRVKIIMEYTKAVQRGELQSNHEIMRDILSLTQRLPVMTTEMFKGDFFNLPLQSNNVTVVLYFIKILSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPU0</accession>
    <name>A0A7D9JPU0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A020703</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019305">
        <property type="protein sequence ID" value="CAB4033502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPU0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="106" mass="11899" checksum="9EC8803EF6AD9C83" modified="2020-12-02" version="1">MGELKAVKYSEGMEKELLVENKLLRKDLRNLVGYITPYIPLIGILSAGIIVGKHVVIAKENVTFKYQSQKLRNHIALAQPAADDRHLPSFPHAPGYPIWNTIPKDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JQ62</accession>
    <name>A0A7D9JQ62_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A057575</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020053">
        <property type="protein sequence ID" value="CAB4034363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JQ62"/>
    <dbReference type="OrthoDB" id="4369127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="148"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26802" checksum="A9C9DE90D73DBFD1" modified="2020-12-02" version="1" fragment="single">MESCLEGLRDEICLPYLDDVIDFSKTFDEHVEHLRTVIRRLRDHGVKIKPKKCNLFRREVHCLGRVVSEYGYKMDPTQIQAVLSLKNKQPKTVGEVRHLLGLLGYYRRYIQDFSRVAKPLFDLLQRSNEPSNNKSKTPQVPSSQSVSWTDEHSSILDQLVTRVTSAPILAYPDYNEPFVLHTDASQEGLGAVLYQEQNSEMRVIGYGSRSLTPAEKNYYLHSGKLEFLALKWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KIM8</accession>
    <name>A0A7D9KIM8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048755</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039492">
        <property type="protein sequence ID" value="CAB4045441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KIM8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="87" mass="9659" checksum="3CB1004906A07E66" modified="2020-12-02" version="1" fragment="single">SLNLEPNYLVDKTFFHVGCGPCGMTNDAMVEVFAALSLFVGIQNLMTHLDTGLYFNVLEMVCAVGRYDKCLHYYTEEKVNDNSGNGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L472</accession>
    <name>A0A7D9L472_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Neurogenic locus Notch -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A069475</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014334">
        <property type="protein sequence ID" value="CAB4026667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L472"/>
    <dbReference type="OrthoDB" id="5965914at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049883">
        <property type="entry name" value="NOTCH1_EGF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039:SF58">
        <property type="entry name" value="EGF-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24039">
        <property type="entry name" value="FIBRILLIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07645">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00010">
        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01187">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 5" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="5">
        <location>
            <begin position="154"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4026667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="207" mass="23720" checksum="CF8236CEBF29EEFF" modified="2020-12-02" version="1" fragment="single">MNIVFVVMFTLRILVLFLQLHLATAEESIYVDYESNPDHPFPVIRWDVPSLKTNIIAQSRELTYQFCGLACAEHRFCVAFNYQQQSEWNEWNCQLTNTTDHKFNNNASKKERVWTFIKDNADRRQVASCRGEVNECHNGGTMIWDPVKPFNCLCEKGYEGEICEKDIDECSHALANECDINANCTNTPGSYNCQCHVGWTGNGKVCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L806</accession>
    <name>A0A7D9L806_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Xanthine dehydrogenase oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A023121</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the xanthine dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013719">
        <property type="protein sequence ID" value="CAB4025639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L806"/>
    <dbReference type="OrthoDB" id="8300278at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.390.50:FF:000003">
        <property type="entry name" value="Aldehyde oxidase1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.30:FF:000012">
        <property type="entry name" value="Xanthine dehydrogenase/oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.120">
        <property type="entry name" value="[2Fe-2S]-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.50">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.50">
        <property type="entry name" value="CO dehydrogenase flavoprotein, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="entry name" value="Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444:SF3">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="2Fe-2S ferredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="CO dehydrogenase flavoprotein C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="CO dehydrogenase ISP C-domain like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="CO dehydrogenase molybdoprotein N-domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="FAD-binding/transporter-associated domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="7" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="596"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00034078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4025639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="596" mass="64783" checksum="EA033EF0F153588A" modified="2020-12-02" version="1" fragment="single">MFHADHDEHVIIDYPRMMGSPVAAINVEVNGVTYSISNTSAKTSLNEWLRSQPGLKGTKVTCQEGGCGSCVVALTKQDLVTGKEKTIAVNSCLFPLFAADGFKITTTEGIGSSRSGYHPIQERIAEHNGSQCGYCTPGMVMNMYSLLSENVQPTKQEIEDSFDGNLCRCTGFRPILDAMKSFAKDEKPIDIEDLQGCQGKGNCCSETRTCHGCCFNMEQLAGPQWYKPSSLTDLYTILNDHSSDSVRLVAGNTGTGVYKNDGDFNVYINISDIPELNVVQVTDSALQLGAALSLNTVIRELSSNSKKSKSFDVLATHIKKIANVPVRNIGCWAGNLMLVHNHREFPSDMFTIMSAVGATLTIGSVDASTKSYSLEEFLSVDMKSKVILSINVPFSAEDEVVKTFKIMPRHQNAHAYVNAGFRVSKDSSYTVQGTPSLVFGGVKLSPMRASETEKYLAGKSLLDSATLKGCLSALDEEIVPESSPLTTSVEYRKSLAIGLFYKFYLALLGDKANERVRSAALPYVRPISSGQQSYDTTASDYPLTEPMTKITAKLQASGEAQYTDDIPKRQGEVYGAFVTTTKGNCKIANIDTSEAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LCT3</accession>
    <name>A0A7D9LCT3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016877">
        <property type="protein sequence ID" value="CAB4030443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LCT3"/>
    <dbReference type="OrthoDB" id="5989126at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4030443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="66" mass="7496" checksum="E4710ECD29D40C5C" modified="2020-12-02" version="1" fragment="single">MNEDLLSCKREAVAMTQMEQPPLDGNSKKKGYIKLTKELWDAKGYNDFGFSSQNLLDQAARLEKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LE34</accession>
    <name>A0A7D9LE34_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Multidrug resistance-associated 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A036084</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017281">
        <property type="protein sequence ID" value="CAB4030992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LE34"/>
    <dbReference type="OrthoDB" id="5988430at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF456">
        <property type="entry name" value="MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4030992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="24374" checksum="55BBE5C5A3D79092" modified="2020-12-02" version="1">MSQASMGYTDTGQIINLVTNDVQKPEEAVLFSLFLIPAPILLVVTSYLCWREIGYSFLPGIGVLFLLPALQTWLGRFYASFRAKTAVLRDKRIKVMNEVICGMRVIKMYAWEHPFAKLVGKIRRKEVQKVRNTLRLNAVNAMFYLATIPLVSAAMFIPYVLTGHTLSSEKMFTVVSIISSVNVVTSVFVPRSIISLRESGVSLERIRVCVLYVSCGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LHA2</accession>
    <name>A0A7D9LHA2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sel1 repeat family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085586</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018274">
        <property type="protein sequence ID" value="CAB4032268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LHA2"/>
    <dbReference type="OrthoDB" id="2384430at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052945">
        <property type="entry name" value="Mitotic_Regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43628">
        <property type="entry name" value="ACTIVATOR OF C KINASE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43628:SF1">
        <property type="entry name" value="CHITIN SYNTHASE REGULATORY FACTOR 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08238">
        <property type="entry name" value="Sel1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81901">
        <property type="entry name" value="HCP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4032268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="28369" checksum="4890059CB77270E6" modified="2020-12-02" version="1" fragment="single">MEEPKKIAKTKPRSMFAGQKEFNQAQLLEFVHHDYETARRFYEKACKAGHPMAQYQYGLWFADVKGERIKPDEIKARKLFEASAENGHGIAQVALAQMYETGRGGLKQDESMALYWYKEAVKNPSSIARENISNIYNKIAFMYMEGVGTMKDVNKALKWFKKAEMDSNLSQTVQSLLETLAKVNPGAPRQREADRRWGVMSDYVDKLPQDEKPKTFGSWTKVMKKCGYGVHEEFVLKTNENTPCNFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LV64</accession>
    <name>A0A7D9LV64_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061873</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026122">
        <property type="protein sequence ID" value="CAB4039969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LV64"/>
    <dbReference type="OrthoDB" id="6016580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="268" mass="30019" checksum="8E3176C21BA0ECC5" modified="2020-12-02" version="1" fragment="single">IFTASINTGIFPYEWKASRVTLVFKSGTRNNPGNYRPISIIPCVAKIFEKIIFDQLHGYLDSNNLLNKCQSGFRPFHSTLTALLEATSDWSMNIDNGLINGVVFIDLKKAFDTIDHQIILQKLKNYGIDENSLTWFHSYLTDRTQKCRVNGQLSDSVPVACGVPQGSSLGPLLFLIYINDLPNCLDHTTARMFADDTSISYASDSAKELQNVINTELKGLSDWLTTNKLSLNIVKTEFMVVGSRQRIKTLNTEIDIEINGNMVNQVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MAA9</accession>
    <name>A0A7D9MAA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ras-related Rab-1A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A049874</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035238">
        <property type="protein sequence ID" value="CAB4044514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MAA9"/>
    <dbReference type="OrthoDB" id="9989112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00154">
        <property type="entry name" value="Rab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000586">
        <property type="entry name" value="Rab family GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050227">
        <property type="entry name" value="Rab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47977">
        <property type="entry name" value="RAS-RELATED PROTEIN RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00176">
        <property type="entry name" value="RAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51420">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4044514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="214" mass="24014" checksum="5E63BD545016679F" modified="2020-12-02" version="1">MDQNQNCHKNNEFLFKVLIIGDVAVGKSSIMKRFAENVFDRKYGSTIGVDFKTKKLKLGGKAVKLQIWDTAGHERFRSITSAFYRGAHGIVLVYDVTRMETFTNIPKWLQELDLQDYNCTVKILFGNKSDLSSERDVPRETAFKYADSNNMFLFETSAKTGNSVNEAFEHLVSRMLVAFHEAESTATKPILSGDLSTCILSEQEKIIAGSGCSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FFP3</accession>
    <name>A0A6S7FFP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Homeobox Nkx</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A013361</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000099">
        <property type="protein sequence ID" value="CAB3978254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FFP3"/>
    <dbReference type="OrthoDB" id="6159439at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017970">
        <property type="entry name" value="Homeobox_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050394">
        <property type="entry name" value="Homeobox_NK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24340">
        <property type="entry name" value="HOMEOBOX PROTEIN NKX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24340:SF82">
        <property type="entry name" value="HOMEOBOX PROTEIN VND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00027">
        <property type="entry name" value="HOMEOBOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 5 6" id="KW-0371">Homeobox</keyword>
    <keyword evidence="4 5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="DNA-binding region" description="Homeobox" evidence="5">
        <location>
            <begin position="108"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="47"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="84"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3978254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="222" mass="25429" checksum="D2B34300217A9333" modified="2020-12-02" version="1">MEASRKKSSSTTFSINSILQEEKRSKMNEELTTVTYIHDFGGITAQNHKRLPEPVQNTTPQNCVTIGESSQTSFSSHGLIPNEGPNTGKSASTPSSKDATTNSSTKSKPKRRVLFTRAQVFELERRFRVQKYLSAVEREQLARITNLTPTQIKVWYQNHRYKNKKQNVQESTKTQQLWDLYEYGRNRQMLEQMFPCATTPHVTPSINLAAMNYGTHITRLQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSC3</accession>
    <name>A0A6S7FSC3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000153">
        <property type="protein sequence ID" value="CAB3978939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSC3"/>
    <dbReference type="OrthoDB" id="10389160at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.29.30">
        <property type="entry name" value="Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011993">
        <property type="entry name" value="PH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001849">
        <property type="entry name" value="PH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00169">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00233">
        <property type="entry name" value="PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50729">
        <property type="entry name" value="PH domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50003">
        <property type="entry name" value="PH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="150"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="150"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25691" checksum="9B332908C6956D7C" modified="2020-12-02" version="1">MVSEQVSDYSDLTAGQYEGKVLKREKNYKWQPYWCVLYGRQLTFYDDSQKSHVAGRIEIQPGSRCDKGQPKSKIPCLSELLHRDFTKLKKYSLKLKTKKGTHVFTYENVKEQTRWQMAMNNASQINASGVRLSWIPTPFSMVNSPEAVQNKRLSLSRTPRDCNSNNARTSEDVEISLENRSTPKSKVKSKHDDTHNLIPESDSEMTDGHAYTNPSLQKEVVTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FSZ3</accession>
    <name>A0A6S7FSZ3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000588</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000534">
        <property type="protein sequence ID" value="CAB3982708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FSZ3"/>
    <dbReference type="OrthoDB" id="10056446at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52266">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="160"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="190"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="347" mass="38320" checksum="40DFC3B8F2EFA820" modified="2020-12-02" version="1">MAVSLCTNIKVIGEQLHWGGTLNDLKEFVSNELKLSGGWTSPDGEVKLFTSDTANVSLKWHGKTTKSITLFGDSIETNNLILEPERDSLITALKLQQQDIEQNRTTTQKRLAEWKTTSAPKNKDNQASATLNLHKSFDTLDDELDEGNGEQHPSIINLDISQQSDPDHQPTEDNNTSTGSNNGGTLTGHITDRRNQNKEKSQEAKQNIVIIGYSIVKHIFPTNLSEKKVQKFTYLGKTASEINNKLNTIESNLTPCHVVVHAGTNNIPSQSVDECINDIEELIVGVKEKFPNSKIGISGITTRQDIDSTSKVNEVNEKIKAISLKHSVKFIDNSSLDETSLNSSKLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FTG4</accession>
    <name>A0A6S7FTG4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A048359</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000549">
        <property type="protein sequence ID" value="CAB3982878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FTG4"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3982878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="283" mass="32117" checksum="F60EA3C683BBA7FC" modified="2020-12-02" version="1">MFGFRKGHATSSVLLRARDDVLKAMKKGEITLIAFADFSKAFDTVDFAVIIKKLHAIGFSHSSLNWILNYLTGRKQLVQVNDSQSELADVLFGVPQGSILGPMLFNLYVNDLQNDFTCRCFQYANDTTVYRSCTPKNLSQCVQEMNDNIQTLETWVTESNLLLNENKTKQMLISTRQMSRTHNLGDITPPLTIKNISLERVEHFKLLVTWLSEDLKWSHHVKELVSSCYGVLSTLRKIRNMTPQHTKKLSAESLVLSKLNFNDVVCYPLPAYLCKCVISDAVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FVY2</accession>
    <name>A0A6S7FVY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A045510</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000724">
        <property type="protein sequence ID" value="CAB3984334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FVY2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.90.10">
        <property type="entry name" value="Cystine-knot cytokines"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029034">
        <property type="entry name" value="Cystine-knot_cytokine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006208">
        <property type="entry name" value="Glyco_hormone_CN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00007">
        <property type="entry name" value="Cys_knot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3984334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12721" checksum="9934282BF220C489" modified="2020-12-02" version="1">MEIRVFNGVYLICALVLLASPVRIDAQRKACRVQNLERTVKRNDGCQMKFIVQACRGTCNSEEVHLERSPFVLRQCNCCKSAGNITTQDITFTCSSGNVNLTVPSVTKCACLSCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWM4</accession>
    <name>A0A6S7FWM4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RBR-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="4">2.3.2.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A044456</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-N(6)-ubiquitinyl-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the RBR family. RNF19 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.31" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020000139">
        <property type="protein sequence ID" value="CAB3978750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWM4"/>
    <dbReference type="OrthoDB" id="1431934at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20338">
        <property type="entry name" value="BRcat_RBR_RNF19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd20355">
        <property type="entry name" value="Rcat_RBR_RNF19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16629">
        <property type="entry name" value="RING-HC_RBR_RNF19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.1750:FF:000001">
        <property type="entry name" value="RBR-type E3 ubiquitin transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.25.20:FF:000004">
        <property type="entry name" value="RBR-type E3 ubiquitin transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000424">
        <property type="entry name" value="RBR-type E3 ubiquitin transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031127">
        <property type="entry name" value="E3_UB_ligase_RBR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002867">
        <property type="entry name" value="IBR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044066">
        <property type="entry name" value="TRIAD_supradom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11685">
        <property type="entry name" value="RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01485">
        <property type="entry name" value="IBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22191">
        <property type="entry name" value="IBR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00647">
        <property type="entry name" value="IBR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51873">
        <property type="entry name" value="TRIAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="17" id="KW-0436">Ligase</keyword>
    <keyword evidence="13 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 16" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="11" id="KW-0862">Zinc</keyword>
    <keyword evidence="9" id="KW-0863">Zinc-finger</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="291"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="344"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="406"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="445"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="500"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="15">
        <location>
            <begin position="8"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="15">
        <location>
            <begin position="39"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="15">
        <location>
            <begin position="417"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="15">
        <location>
            <begin position="456"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="15">
        <location>
            <begin position="500"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="15">
        <location>
            <begin position="525"/>
            <end position="538"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00061087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB3978750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="566" mass="61336" checksum="2A0D5E7C3C9EBA5C" modified="2020-12-02" version="1">MSDTQKQATDESPKNVETPKKHGRFRSSMRSVFGRSGKSKNDDSSQSKTSKDANSSQSRKSSSEAVCVCPVCYVVKPQSLFPDISTCEHRTCGDCLRQYMTIEINESRVNLTCPECAERFHPNDIKYVLNDEVLMNKYSEFTLRRTLVSDPDCRWCPAPDCGYAVIAAGCASCPKLTCEREKCKTEFCYHCKQIWHPNLTCDMARQRRASNIRSLPMNDSKSLSGEDMKPCPRCGAFIIKLDDGTCNHMTCAVCGAEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQMGTLIGAPLGIALAAGVVLPAMVIGIPVYVGRQMHEKYNRPYHTKKKRNIAIISGVTLSILVSPMLAALTVGVGVPIALGYIYGVVPISLCRSGGCASVTTKNGRGVNLEFDSDGDMVTNPNERSGAMEASSAAEENIDGVVTVVATVNTRAPDTESGKQPSVSLSQECSSLASSNIEPSGREDSGSMIPGPRSCAVSIASSIENLNITDHTPSPSLTGISSETAEHDRVSTSSIPSSKTSSDSSLKKVVQLKVASESRAHDAEQPTVVAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FYS7</accession>
    <name>A0A6S7FYS7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">pantothenate kinase</fullName>
            <ecNumber evidence="4">2.7.1.33</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A057987</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-pantothenate + ATP = (R)-4'-phosphopantothenate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16373"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29032"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 1/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the type II pantothenate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.33" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020000792">
        <property type="protein sequence ID" value="CAB3984838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FYS7"/>
    <dbReference type="OrthoDB" id="275583at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004594">
        <property type="term" value="F:pantothenate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd24122">
        <property type="entry name" value="ASKHA_NBD_PanK-II_Pank1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.40:FF:000025">
        <property type="entry name" value="pantothenate kinase 2, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.510">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004567">
        <property type="entry name" value="Type_II_PanK"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00555">
        <property type="entry name" value="panK_eukar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12280:SF30">
        <property type="entry name" value="FUMBLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12280">
        <property type="entry name" value="PANTOTHENATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03630">
        <property type="entry name" value="Fumble"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00060870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3984838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="393" mass="43476" checksum="6C3D5297481D08CC" modified="2020-12-02" version="1">MQMADGVDSTRASWSIQENELIPKTDLKLQGKTLPWVGIDIGGTLSKVAYFEYYENGDNIKYLGNNHTAVQDFIKSTHQYGSDGERDARLELKDVQLGSRKGNLHFIRFPTSRMDAFFELAEEMRAKELLQKKVYATGGGAYKFDNNFKEVLDLQLVKCDELHCLIQGIHFIDANFIGECYYLKFSNDSAEPEKVTYDFQSACPYPFIVVNVGSGVSILAVRSSSEFERITGSALGGGTFVGLSCLLTGCDTFEEALELAAKGDNKTVDKLVKDIYGGDYTRFGLPGDVVASSFGSMILQEKRDNVRKEDLACATLMMITNNIGSIARMCAINEGIDRVIFAGNFLRKNNLSMSMLARAMDFWSKGTMKAIFLEHEGYCGAVGALLESLSDVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G033</accession>
    <name>A0A6S7G033_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A014508</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000217">
        <property type="protein sequence ID" value="CAB3979660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G033"/>
    <dbReference type="OrthoDB" id="186871at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001939">
        <property type="term" value="C:female pronucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042585">
        <property type="term" value="C:germinal vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001940">
        <property type="term" value="C:male pronucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044727">
        <property type="term" value="P:epigenetic programing of male pronucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010736">
        <property type="entry name" value="SHIPPO-rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35678">
        <property type="entry name" value="PROTEIN STPG4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35678:SF1">
        <property type="entry name" value="PROTEIN STPG4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07004">
        <property type="entry name" value="SHIPPO-rpt"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="75"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="222"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="80"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3979660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="349" mass="38579" checksum="01836DE65F75425D" modified="2020-12-02" version="1">MATDSVQLQNSRGRFVGGNSLGNLHRGHGTVAASSSIPSKYQTIVVDNSERKGFLSRAKRFQELVAVNENPGPGTYKGYEQSNHEISPSYSKRGTGTFASKMTRFNKEQRAFAQPGPGEYEPLKPPVKSDFNKANVTSNFHLPIAMPSDERKQLQAPAPNSYKISKATGKVAHDNNVSACAAFKSNSKRQSFITSKTAANLPSPCQYNVKEELLHKSSTGASASFKSTTERKMTCTPDLGPGPGSYNPYNTRKEKRKGYKFQRQHYLSISAPAFALPEVEPAPGPGHYNLVNYEGEGKRYMSSSMFVSTTSRWNPTWEAETEVPGPTSYRPRRVGKQSFIYNPSRKWIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GEN4</accession>
    <name>A0A6S7GEN4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A042899</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endosome membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Late endosome membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Lysosome membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
            <orientation evidence="3">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the CDIP1/LITAF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001138">
        <property type="protein sequence ID" value="CAB3987226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GEN4"/>
    <dbReference type="OrthoDB" id="5599753at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031902">
        <property type="term" value="C:late endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006629">
        <property type="entry name" value="LITAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037519">
        <property type="entry name" value="LITAF_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23292:SF6">
        <property type="entry name" value="FI16602P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23292">
        <property type="entry name" value="LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10601">
        <property type="entry name" value="zf-LITAF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00714">
        <property type="entry name" value="LITAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51837">
        <property type="entry name" value="LITAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="126"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="39"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="8">
        <location>
            <begin position="53"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3987226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="18287" checksum="23AC5F76702AFB1B" modified="2020-12-02" version="1">MAQPPPYNQPGYPPQPTNPPAYPGDQKAGYPPQPGYPPQGGAYPPQGGAYPPQGGPPPQPGYPAQPGYPVQPSHAGHHTTTTTVIATQPGPVIVTGVAFGEIPVSMTCPRCQAQIVTSTIYQDGSFAWLMAAILCFIGCWPCCLIPFCMDGCKDVTHHCPNCRSHLGTYRRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GH98</accession>
    <name>A0A6S7GH98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019553</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001823">
        <property type="protein sequence ID" value="CAB3991298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GH98"/>
    <dbReference type="OrthoDB" id="7698392at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19226" checksum="5D564B3066CF3693" modified="2020-12-02" version="1">MGVNIEFNDQHPSQYAAKVRHFNMSETAIIGNEINKLLSKGVIIPSIHELGEFISSIFLRLKKDGSYRMILNLKSFNEFVKHRHFKMDTLDAAVKMMKPNCYMASIDLTDAYYMVPVHAADQKFLKFEFLGRLYQYTCLPNGLSSAPRLFTKLLKPVYSTLHTVWAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GK64</accession>
    <name>A0A6S7GK64_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009642</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001516">
        <property type="protein sequence ID" value="CAB3989596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GK64"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="107"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="228" mass="28295" checksum="40411C679F891FAA" modified="2020-12-02" version="1">MERENYLEDLQQRKPKTLSEQDIEHLIETSPPSDDEYQPDGYRKRDYRGGYQQRRDTHAPFRPEIPEPRGPTGGKRRYRERFNDRDVEHQDCWSYDEVNYDDDRFYGRRFAGDTGRYQNSERGNLKYERDSYTDQDKFPSHDERHRYETDLSNDSRFDSYPRKDGTFHREERRHEVDRRRRVDHRDAGRYRHPHYDGSYEEPANYRERDDRNNSRMHNRNPSRDYRWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GM08</accession>
    <name>A0A6S7GM08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001655">
        <property type="protein sequence ID" value="CAB3990426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GM08"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="9929" checksum="30250213574D5119" modified="2020-12-02" version="1" fragment="single">MSHLPDNFVGFYHTESNETVGTGETGDESLPTKLDPIEHGPLTYVAGYVVSKLFQTNKRKAGKTNEELHLLLQGMKSSDQSSSFISARTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GP21</accession>
    <name>A0A6S7GP21_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A084865</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001895">
        <property type="protein sequence ID" value="CAB3991659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GP21"/>
    <dbReference type="OrthoDB" id="5971203at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035992">
        <property type="entry name" value="Ricin_B-like_lectins"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50370">
        <property type="entry name" value="Ricin B-like lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50231">
        <property type="entry name" value="RICIN_B_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="722"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="722" mass="83004" checksum="9A05A9AC3C9E2A59" modified="2020-12-02" version="1" fragment="single">SVSNYLLNKESNPNLELLAEQGIEPKVSVSVNYFSPFNECFYTPFTLKVQSVEYIKSINCVYIDYCAIFGTQNTMSHCSGVLHACDTPACVRVVDWNYYDSQQIFRTHVYKNRKAASSIPSSWLGLKNNPSITISMVIRPLHASGICRLSLTYKKYLMDFLYLQRGMESRPCCEILYIRCTHTIVFLLLICTSILFTLTQVVLLFITFTFTRVQIQSNLGTTEHGLAVYLLECKSTDPLDRWIWTDHEQLSHLRMGSCLSRKVDGTVQLQFCDSRVKSQKWYCDKDKLVSRYDNSVLHLRSDQAVALTTIQSSTENDTVRLYSNKKSVCSEKGGSPLVLRQMLWNKHKSFFVCDLNSRSEETVNHCMYTKDDGNTWQVIWIHKKPQIKQSKFYKYHAYMIYTNKRMLLATLIVTNKRKGIIIVHSSVNNLCSTSAQRNLRRLWSPERIFKSKAVMLSIQGRDLNNGRKSREMIHLWSFLGMPEWGASSAGIHRYVTGRWNLVLSWSKLGTRYARPGSCKQILAFGQSSGDGIYTIYPAHPLLGIQAYCDMTRDGGSWTLLVTAKTPYWDISQVFENTPKEPSTSKDHSILKHADDIKTQSGEECFEYRLEAKEFGQYGGIWRAPKSYTFLARNNSQTDVQLVKKFGNWEYNFTTIEKRMPWICQEDYCGGILTSSAHNPYYYGSILSGHSYKGLPYGLPAPWMREEQASPGIIWYWMREGGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GRN8</accession>
    <name>A0A6S7GRN8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039201</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001142">
        <property type="protein sequence ID" value="CAB3987240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GRN8"/>
    <dbReference type="OrthoDB" id="6515504at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF7">
        <property type="entry name" value="THAP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11450" checksum="A36135A91A7A45F4" modified="2020-12-02" version="1">MKASIWKTVMGESIILCGDGRNDSPGFSAKYCVYVLMEQFVNDNVIVDIEVVDKRKTGGVSTNMEVCGLKKLLERPLLVRLLCQKLRQMLPRQLPYWLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GU29</accession>
    <name>A0A6S7GU29_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Transmembrane protein 231</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A056815</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Transmembrane component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for ciliogenesis and sonic hedgehog/SHH signaling.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell projection</location>
            <location evidence="1">Cilium membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TMEM231 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001496">
        <property type="protein sequence ID" value="CAB3989487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GU29"/>
    <dbReference type="OrthoDB" id="426438at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060170">
        <property type="term" value="C:ciliary membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035869">
        <property type="term" value="C:ciliary transition zone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032880">
        <property type="term" value="P:regulation of protein localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019306">
        <property type="entry name" value="TMEM231"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14605">
        <property type="entry name" value="CHST5 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14605:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 231"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10149">
        <property type="entry name" value="TM231"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00024803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB3989487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="36202" checksum="FEAC75431EDAC130" modified="2020-12-02" version="1">MVMYEIHSHPVLQKYKAHICSRASVFQLFIAIFTVLFPLLVAYASQGFWLKEASYKEQPEVHFKHQYVVFLQGLTSDSYVAYSTYQNFNNLVNDKLRIPVTKSYEEDTNRDGKNDVLHFTLEMPLSSKESIYTAQLLLIFEYKLQRFSTLLMESMAYIHHTSGIPGAQFITTGELRLKQKYLLRHSGRTTTYNQPVIDSTSVLAKAYDFAKIFDNYFKRNVTTEYASGYPVWKSGRNTEATFTLKATIHYPEERIFYRPGFWQLIKHAWIQYLAVLVIFLALFSRIKRFVFENQIVMTVPQKIRTEHLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWA7</accession>
    <name>A0A6S7GWA7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077988</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002828">
        <property type="protein sequence ID" value="CAB3996243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWA7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="252" mass="28156" checksum="61C56990F124B268" modified="2020-12-02" version="1">MASGLDDQYNSVEWQTFPHLESSVSNGTYERWCMGVHLLAISPESYDILVKALEANVEVPKMETVTERLLQEERKMKERSGSETNDEMKAMFANRQSKGKGPKCYHCGTFGYIKRNCRELNTLKHDGDKSEFNVGIDNKHKANTAAKSRRTGSSSDSDEVGLMVNHAFSSVNGRTNTRIVVSGATCHMCNDVSQFLKLHNLEKPEDVTLGDGHVVITTGRGVVKTEIESPNGQKRKSCVLQDAFKFQAYRIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXH5</accession>
    <name>A0A6S7GXH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A027894</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002936">
        <property type="protein sequence ID" value="CAB3996743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXH5"/>
    <dbReference type="OrthoDB" id="5944918at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36191">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36191:SF4">
        <property type="entry name" value="VWFD DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3996743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="16658" checksum="639789EF5FA07E80" modified="2020-12-02" version="1" fragment="single">HPPFPKQDIISSHSVEHPVEIICAFLCSNEPKCVGFNFRTRNTDENCQLTNSTKENSKTKNGSWTLLRVAAPKECFEYTWLNESNRNAKYLPRLYHCDSSLSTGWYRFGGGAGIKLSIKCYNGARCGTTAHGWMSGAHPTIAEGKVSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H1S9</accession>
    <name>A0A6S7H1S9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A034619</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002896">
        <property type="protein sequence ID" value="CAB3996559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H1S9"/>
    <dbReference type="OrthoDB" id="5829916at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052304">
        <property type="entry name" value="PTTG1IP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15191:SF3">
        <property type="entry name" value="PITUITARY TUMOR-TRANSFORMING GENE PROTEIN-BINDING FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15191">
        <property type="entry name" value="PROTEIN CBG20567"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5044005974" evidence="3">
        <location>
            <begin position="19"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="86"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3996559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="20128" checksum="31BCDD86C27647B1" modified="2020-12-02" version="1">MNFYQTLWIFVVVFFVLAEYNFQHVEGSSCASRNSSCGDCVGLKGNCYWCKNKKMCGKFIKSDGKNQANCKGSDMYYKQCYVSGNLLIIIIPCVVGGLLIIIGCCIYCCCCRKCCSKKKGLFDKEDKKLKKERNERKQVQDHRKAERQARNEEIRMKYGLKPASGDSRYQRLDQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4B3</accession>
    <name>A0A6S7H4B3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042826</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003515">
        <property type="protein sequence ID" value="CAB3999099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4B3"/>
    <dbReference type="OrthoDB" id="6021176at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="156" mass="17425" checksum="A1EA0668E02AD808" modified="2020-12-02" version="1" fragment="single">NATLCSNSLTIEDNGKQIFNGSIVESLVLLLEAISIVLVVLQNIRTNILKATQSSQSKKKKKVLPPAQKELSDAYQLFAESLCSVVSGIHDDLSNKQVLNLAEDLTTLDINELYKLTDSSLLTEIWEKMQTSYKTSVQEITDVYKLKLDYLKTLCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H7M1</accession>
    <name>A0A6S7H7M1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Major facilitator superfamily associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A013402</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. MFSD6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003457">
        <property type="protein sequence ID" value="CAB3998870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H7M1"/>
    <dbReference type="OrthoDB" id="5989317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd17335">
        <property type="entry name" value="MFS_MFSD6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051717">
        <property type="entry name" value="MFS_MFSD6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172:SF2">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16172">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 6-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Major facilitator superfamily associated" evidence="6">
        <location>
            <begin position="32"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3998870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="578" mass="64158" checksum="6487D5AE410E24F2" modified="2020-12-02" version="1">MDGHNAVSQEGSDEELPAENSRCSKINVKLLPYKSFYFLFFSAVGSLFPYLAIFYKQLRLSARQTGVLIGIRPVLQLVSTSSWGIIADKSDKSKCIFLISLVGWLCANFSLSLVKHKADIGPCRDNGSLTVFDNALGVAAAGPFLRNETFKADAEKALMGMRINRHRIKRRNLTGPLNQKRSHSMESNRTWNNIISKIKSTFKNGMTERKIDELEQSSIGHSPWSLHAILNLKTSNNTEISQNNDGIFIILLIISIVGTLIAAPAIPLADTATLHVLGDRKDYYGKQRQWGAIGWGISSFLVGSVVSTVQEKSKCNVPNHVNYQPCFYAFAGLMILAFIPALFIRFEDRNLPTANLTRSLRTLIKFDSIVFLLTIHQFGNSWGLVQTFLLWHLQDLGGTQFLFSIVTAVQCLSEVVSYHIAGYAITKLGYYRVLYLGLFFSSLRFIFYGVIKNPWLVVPIEIFHGVSTTLIWALAVSFIGLNTGVATTMQGILSGIHWGLGFGGGAIFGGILVNAIGSKYTFLGYGIFSLINLLGFMLTRNLRRCVQPTEESQSLLDQEEIELNSVETENSPIADDLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H8G5</accession>
    <name>A0A6S7H8G5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A061718</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003551">
        <property type="protein sequence ID" value="CAB3999267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H8G5"/>
    <dbReference type="OrthoDB" id="7735550at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00087">
        <property type="entry name" value="FReD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.215.10">
        <property type="entry name" value="Gamma Fibrinogen, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036056">
        <property type="entry name" value="Fibrinogen-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014716">
        <property type="entry name" value="Fibrinogen_a/b/g_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002181">
        <property type="entry name" value="Fibrinogen_a/b/g_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050373">
        <property type="entry name" value="Fibrinogen_C-term_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040941">
        <property type="entry name" value="GGGWT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143:SF424">
        <property type="entry name" value="FIBRINOGEN C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19143">
        <property type="entry name" value="FIBRINOGEN/TENASCIN/ANGIOPOEITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00147">
        <property type="entry name" value="Fibrinogen_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00186">
        <property type="entry name" value="FBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56496">
        <property type="entry name" value="Fibrinogen C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51406">
        <property type="entry name" value="FIBRINOGEN_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3999267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="199" mass="22464" checksum="680CFF75179BE86E" modified="2020-12-02" version="1" fragment="single">LKDGLKFPVDYSCSCIKVAEKGCANFYESGERKDGVYTIDADGFGAFQVWCDMQTVGGWTVFQRRQDGSVNFHLNWSEYKVGFGNLSGEFWLGLDNIHRLTKYNQSVLRVDLMDIDGSKGYAQYMSFSVASESESYKLNVGNFSGNAGDSLSYHNGMMFTTKDRDNDKRENDNCATNRKGAWWFNNCARSNLNALETQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HAQ4</accession>
    <name>A0A6S7HAQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A016995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002203">
        <property type="protein sequence ID" value="CAB3993177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HAQ4"/>
    <dbReference type="OrthoDB" id="10534314at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="129" mass="14667" checksum="B6022B7D38783F4E" modified="2020-12-02" version="1" fragment="single">KLPLLEDNLIAFGTDGEKALYNQFRKKFKIAVHVRCIGHFRENCKTHLKGVSLKNQNKILNDIFGKNIEDTYYGGLIDCESEDIFTATLNSSIDAWHAIVPDRFIAWFRTVIPEILSSMLAPVREKAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HFR5</accession>
    <name>A0A6S7HFR5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A052951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004546">
        <property type="protein sequence ID" value="CAB4003129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HFR5"/>
    <dbReference type="OrthoDB" id="7312725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4003129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="11327" checksum="A3D5E8A52A9513FB" modified="2020-12-02" version="1">MVKRSVTCESCIDALVEKDPNNTKFNSLVRQKNHGGLIEASASVYQIFQSTKQCVVRMLHSTGGNLPASSKIVSAISSVVLEEAVKKNSFSSLHDHMFDSSPDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNG8</accession>
    <name>A0A6S7HNG8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon X-element</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073110</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003037">
        <property type="protein sequence ID" value="CAB3997160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HNG8"/>
    <dbReference type="OrthoDB" id="5981116at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3997160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="269" mass="31565" checksum="7E38F521CFA290F6" modified="2020-12-02" version="1">MGFNLGFPDQEHFRDELLNDQHGLPVVICSYPVTEQRFVLLLGNGLNLGMFLRFLAETSTTDEKNHVNRIVLSAEFVHDVLRSMDTEYDRECAKVLLSADKSRSDLDELGIKPDTAVKAVKHERKHKISRELENINALIPKKKDHWPKKRIEDLEEKKILHEERLAEIEVIKKRESKYGKQQFKQGVKRIADKIVEENRTKRRKLGQGASRKVDSDDEEFIVKCIKDKATAHGRRHDSVLYLNHRMKTKDFRDKVNYHRDRVRKEPNTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HYU9</accession>
    <name>A0A6S7HYU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007189">
        <property type="protein sequence ID" value="CAB4011555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HYU9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="27963" checksum="90B52DF834D2E925" modified="2020-12-02" version="1">MESLATGEVIQSLLKKTTIPLCWDDPKYASTVTSVLSGSFDSKGKKTKGRGKEVPLTNVILAANFEMDDDLRVRRLLGRKLVEGYEDYLEETVEGYEDYLEENFLPYVRKIILQGSNPVKEQTSGFDEFIECFGKSLINTTVPDEELRECMKNNVPTRHHGNVMHIILPNLLAIMKRRVGPRASFNLTKLRKAISEQEGASVDHSSCFGGAQRKCVKIPREVVNNDVIALIDKAFGDEPEDTNGMMMMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZ50</accession>
    <name>A0A6S7HZ50_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003278">
        <property type="protein sequence ID" value="CAB3998137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZ50"/>
    <dbReference type="OrthoDB" id="5983179at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="151"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="154"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="194"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="35144" checksum="93933DE1270B0D45" modified="2020-12-02" version="1" fragment="single">MAPFHPATSGQAERFVQSFKHAMKCEKQSASQLKTNMPKFLLAYRNTPHSTTGESPSVLFLGRPLRTRLDLVKPDLQRKVMNRQIDQAGRKGHSPTRQLSIGQTVMARNYSGKDKWLPGIVRAQTGPLSYEIKVGPNRIWRRHIDQLRASSVKVNDRSDDTAEPHPELGETGQDIAPAEEIVAEPDIELDTNPPVVQQQEAGRATTGSEQRYPTRSHQPPERSALSTVLYRCMSYDKGSDNKRQISMRETGFILIFNVKDSYSMVAEHYGTVVSMGNCMLPPNCSSLSKLPPSFANREIEFAQSTHWNGILKGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4I5</accession>
    <name>A0A6S7I4I5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Tubulin monoglycylase TTLL3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A011960</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006893">
        <property type="protein sequence ID" value="CAB4010760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4I5"/>
    <dbReference type="OrthoDB" id="202825at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015630">
        <property type="term" value="C:microtubule cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070736">
        <property type="term" value="F:protein-glycine ligase activity, initiating"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004344">
        <property type="entry name" value="TTL/TTLL_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051437">
        <property type="entry name" value="TTLL_monoglycylase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45870">
        <property type="entry name" value="TUBULIN MONOGLYCYLASE TTLL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45870:SF2">
        <property type="entry name" value="TUBULIN MONOGLYCYLASE TTLL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03133">
        <property type="entry name" value="TTL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="135"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="259"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="143"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="275"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4010760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="354" mass="40255" checksum="EB1DA3BFC93B9D96" modified="2020-12-02" version="1">MLTEDYKPWLIEINSSPAMGASTVVTRKLCANVIEDTMKVVLDRREDRNCDTGRFELAFKQPFVDAPPYIGINLAVNGKAIFSQNLPFRRQPSANRIERLARPREKYPPKCNEYDTMNPDNDTERVENCTAKCEENTTNAKSDTSKAEDDAEKAENDESKAKDMTAILKLKENNLTLNYDEKTGASESLLSNMTKSRNLILNTYKNDLQRRWKSVQVLDSERISEPGKPAQLRTLSMDPSSIKPKGKKTFENKFLKTKNQGKAKKLKISREEHANNNAGHVNKNSSHKRSSHVNKDNDHVDNVRSAPRVITIPEVGTPRTILRYTDKRYGRNKTVAIDMGPEKKFRKNAEVVIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I7L1</accession>
    <name>A0A6S7I7L1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Superoxide dismutase [Cu-Zn] 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A030986</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007630">
        <property type="protein sequence ID" value="CAB4012783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I7L1"/>
    <dbReference type="OrthoDB" id="159229at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006801">
        <property type="term" value="P:superoxide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.200">
        <property type="entry name" value="Superoxide dismutase, copper/zinc binding domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053257">
        <property type="entry name" value="Cu-only_SOD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036423">
        <property type="entry name" value="SOD-like_Cu/Zn_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001424">
        <property type="entry name" value="SOD_Cu_Zn_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20910">
        <property type="entry name" value="AGAP001623-PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20910:SF1">
        <property type="entry name" value="SUPEROXIDE DISMUTASE COPPER_ZINC BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00080">
        <property type="entry name" value="Sod_Cu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49329">
        <property type="entry name" value="Cu,Zn superoxide dismutase-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Superoxide dismutase copper/zinc binding" evidence="1">
        <location>
            <begin position="321"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4012783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="740" mass="81619" checksum="2133351B93312B38" modified="2020-12-02" version="1">MHFVQECTAIVFLVFTITYVPAVSSAYLRAVFDMSDIRGEIRFTEGANGHTRISPNLEGITSNLSWKIHKYPVVYRGNHMHTCQDFYTGGMFDPTGKSSGENYTTRCNDGMKNMCAIGDLSGKHGHLNSSNVSLLDPNLPLNGSNSIFGRSVVLYLDGSTPWACALIDYDDVITAVTTFRGANSGVTGTVRLRQPRGSTTLDTSVEIDLFYSNDATKGSYNWTLEIADNSLPEDGRPSFEGNHCKIATTRVISNHVNIPLAREGPFSERLHFSVNDLPLTGSMSVVGKTLVLKHNGNPTICGSIYEVVPIEAEALFNVDGVSGSFHFKQDSELAPTVVTADIEGLGSKANTYHVHVYRVLDDAMQRRQNAHGMCSNSHVAGHWKPYGTTSASPGTGTVDKYEVGDLSGKYGIIGAKDTLSLVQKDYNLPLFGGNSILFRSMVLHYNNGSRWVCSNINPKNAEFRFKVKAEFIGPDFNGDIIMEQASFVKTHAASHITTFFLNLNYMNNSNVETLSHKWHVHDQDIVKDQMSPMDERCNSAKGHYNPYKVSLEANYSSTCGPKNLLRCELGDTSSKVGKYNIGGGKNRFTESENYFAGLNTILGRSIVVHAKDSGGHRVGCANMKLISKSFVRKELIFKKTTPAHELSQLLATALKINHWRVNHNTAAITDYKMKCQKTSFLLIDSTSSNLGNDFEELKKDWPDNLEKFKPVSEDECSHGFNLQATSLVLAVGLLLTRLMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I9A0</accession>
    <name>A0A6S7I9A0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A047787</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008026">
        <property type="protein sequence ID" value="CAB4013797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I9A0"/>
    <dbReference type="OrthoDB" id="8906575at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4013797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="495" mass="57910" checksum="9D20C4B89E4E3085" modified="2020-12-02" version="1">MPHSLSFSTWNIHGLSHNVLGDKTKIKDFTDNIMKTDFMFLTETWSDKEISIPDFKAFVSDPTTPRTDRPSRMSGGVTLLVKLKYEKYVSIEEKSKNYIWCKVSKDLFNNNRDLFLCGAYIPPEKSSYFDQKIFDELENDVINFLSKGNTILLGDFNGRTSTLNDFVSKDGNNYTNDLSDDSLQPKNRLNFDNTKNNHGLQLINICKNTDMRILNGRTKGDSLGRPTFHGNNGISTVDYIICDQETFQNVNYFVVKPPTYLSDNSQIVTWIDLEKTLLDSEKNRSKPEQTPLHKLQLQFDWSENSKRNFRQTLKSPEIQRKLDQFLQSTFTNDEKGVNECVTEFQNIITHAAKKSLKIRKKKTRRKINNVENKKWFDKECRFKRHELRKIANQKHRDPTNLAIREAYHTALKSYKETLERKRTKFQNDMLIELEKAAEDNPNSFWKTFRNASDEINNANSDNTPKGDDWFNHFSKLHCKHKLTKEHEKIVENLQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ICY0</accession>
    <name>A0A6S7ICY0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A053592</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004763">
        <property type="protein sequence ID" value="CAB4003922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ICY0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="17"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="124"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="86"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="149"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="169"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4003922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="21928" checksum="5FA9E69BD09F5BB2" modified="2020-12-02" version="1" fragment="single">IVLDNFRNPDVSYVVDFLSTHVVATILLALLFLSKIYLIRKYKNYTQRNDGASSATAITLTDLRQSPFHLNPPVHLKRETQVETTVLRLKAKNFQLEEENRNLNAKLVVFENKLARESKISTQIVSTNGETESSRDGNGFSDKCHRKSSASAESIASSEHAVFTREDNSGSLINENTESAGKQETSLAVPQQNSVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IDX9</accession>
    <name>A0A6S7IDX9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Multiple RNA-binding domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A032184</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009397">
        <property type="protein sequence ID" value="CAB4017084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IDX9"/>
    <dbReference type="OrthoDB" id="1879688at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.610">
        <property type="entry name" value="LOTUS domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041966">
        <property type="entry name" value="LOTUS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025605">
        <property type="entry name" value="OST-HTH/LOTUS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050374">
        <property type="entry name" value="RRT5_SRSF_SR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23003:SF3">
        <property type="entry name" value="FI21236P1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23003">
        <property type="entry name" value="RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12872">
        <property type="entry name" value="OST-HTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51644">
        <property type="entry name" value="HTH_OST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="201"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="203"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="236"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="490" mass="53673" checksum="DA6E0DF16134594C" modified="2020-12-02" version="1" fragment="single">MSKAEKVSNDVKSFLRSVLISSKGVKESRVEKDYYELSGEKLLWKNYGFKSLNEFLNAMPDVCVLQYSAKDRENRVYAVHLKGTYMSSHAKKNAKVASTTISPTKEANVPENGRLVEKHGESFKITLSNSQGGEEIDDLLPNKYGLYQVYVVKLPEKCTENDLKDCFSAYGNAVEYQIVRSSIGRKIGFVRYALKSEASRALTEGKKNPPKIHGVELEVGKPKKKSNSLDASSNATSNSEPSEGSLSSTPSSPIKHPFVHEISTKHTSATHEPPPKFLSNSQLSGPVPLLSTHPTVKAPPISQGLLPLNNPPPCLPENPQHNANVPLSVQVPTSPKCTTVVTATTGNNGPWKLSPNSPTKTLLSIHPASQTRPLDNKQLTEAVTTSAKTAEKKFVKLLTYGAVVSGYDSKVSEARLRQEFQSVRNIERLEYQPHYSIAWFKNESAAIQAVSEMTGKFINGCILLVKPFTGSSPVLDEAKPANVAREEKLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IE65</accession>
    <name>A0A6S7IE65_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A008045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008828">
        <property type="protein sequence ID" value="CAB4015747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IE65"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4015747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="55" mass="6848" checksum="5953621E428C8A71" modified="2020-12-02" version="1" fragment="single">LWKPRRISSQMKQYNADMSHCQYMFSKGKKRQWSHIKILKDSPRQYEYILQLIMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IEL8</accession>
    <name>A0A6S7IEL8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009516">
        <property type="protein sequence ID" value="CAB4017364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IEL8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="343" mass="39349" checksum="72A43DF9CB598D7F" modified="2020-12-02" version="1" fragment="single">MTSGRACCCSQIFGLLILLVICILQNVEYSDYCNLIDHPGLVNISFHQTGKELRNSKLLPYNQNRMFTTTKLLHDIELNPEPNNYSTSDSRTTKINVKIAHLNVRSLKCREHYVLVKETILTNKFDIFTISETWLDNSVTDVEFEVPGYKLYRVDRENKKGGAKSHSDLITNDQINKNPNNTNNIWKAIRLCIPNKSSSQMIFSKDDKTLRTNECGYRRDPQELIKFARKKERLTQHQSGNKKWHSTKTSVIQTTDAILNAIDKKKLTATVFLDMSKAYLSNRKQVVKIHSTKSELLPVRNCETVKDLGVTLDLLLSYDEHINCVKHQVILLTLPVVSLAEHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGY8</accession>
    <name>A0A6S7IGY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine threonine- kinase endoribonuclease ire-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009107">
        <property type="protein sequence ID" value="CAB4016413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGY8"/>
    <dbReference type="OrthoDB" id="63989at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990604">
        <property type="term" value="C:IRE1-TRAF2-ASK1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070059">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036498">
        <property type="term" value="P:IRE1-mediated unfolded protein response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045133">
        <property type="entry name" value="IRE1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954:SF28">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13954">
        <property type="entry name" value="IRE1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="274" mass="31353" checksum="772D1FB8821BCAC4" modified="2020-12-02" version="1">MGTSVYVGILEDGSEVAVKKMLIETCEDAAENEKEILSLIEAKKSPYIVSYRLLLKDSIFFYLIADLCENTLNDHVSSQSIENLKEDGPRMVKEILTGLTFLHDQRILHRDLKPSNILVDVECHMRLADFGISRVLNEDETTLYTDAKGTQGWMSTEVLEAIDRACKCRYKKKSDVQVTGMITFFILTKGEHPFGASHQRMTNIKEGNPMNLEHLVDLCARKFVLSLISHDIKDRPYAHEALRHSFMDKIKLRDAISMPRIISWDSWLKLKECS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ILL7</accession>
    <name>A0A6S7ILL7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038889</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010746">
        <property type="protein sequence ID" value="CAB4020035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ILL7"/>
    <dbReference type="OrthoDB" id="6016580at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="438" mass="50212" checksum="06752A47C5341A01" modified="2020-12-02" version="1">MAKSTGLDKISTKLIKQAGDTITESLLEVFNRSLRTGIFPDDWKFAKVTPIYKSENKTLCENYRPISVISNIAKIFEKLVCRQLNTFLDNNNIIVKNQSGFRRNHSTETSLLQSTEMWLKAMDQGQINGVIFLDLKKAFDTIDHQILLSKLQAYGIRDHTLKWFQSYLDQRKQICMLNNCKSDIETIRCGVPQGSNLGPLLFLIYINDLPNCLETTHSNLFADDTILSCQGHLSIDIEYKLNKDLVNAQKWLSANKLTLNNEKTKYMIIGSRQRLKNLDHVPKISINGHQIERVYKKEALAMEMFEKLPNGGCIARSVVNLAFPLSDRDYLVYISPPYETNDWFGKKAFAIFLLDATHPSRPAGADGIVRATNGGNFYIAVQDEEEPGHKCETLMLATNNYNGWFPKRNEWLVAKNAPNFFYHLRQRVVEGYKEYFNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPB8</accession>
    <name>A0A6S7IPB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026371</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010207">
        <property type="protein sequence ID" value="CAB4018879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPB8"/>
    <dbReference type="OrthoDB" id="5962257at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="263" mass="30159" checksum="319F394153DE7344" modified="2020-12-02" version="1">MSEPQEESLRVDNTPENILQEGGSEEEPPAKKSKASEQKEDSPYPFAKLRSIRIFSEREINGQDAEMTRVYWTFWNTTAEELCSDGAYNDWGKRDLKLYIDAAWVIHKTKLQESRETEVQEGIRELQDRYGSSELPVKLRTEDENVTELLAQLQDSTANLTELNVELSKSRGKFFNLKQRPTSTSYTQEIKDDEIRKMTKTISEKEKNLYGGMADVKKDQDSIKKALTRLGNIIEKTKRNCQPLPSDILDQGLQTVEATIITT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IRK8</accession>
    <name>A0A6S7IRK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RING finger and CHY zinc finger domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A015474</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011718">
        <property type="protein sequence ID" value="CAB4021934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IRK8"/>
    <dbReference type="OrthoDB" id="411372at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042981">
        <property type="term" value="P:regulation of apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.533.10">
        <property type="entry name" value="Death Domain, Fas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011029">
        <property type="entry name" value="DEATH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001875">
        <property type="entry name" value="DED_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008913">
        <property type="entry name" value="Znf_CHY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037274">
        <property type="entry name" value="Znf_CHY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017921">
        <property type="entry name" value="Znf_CTCHY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037275">
        <property type="entry name" value="Znf_CTCHY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21319">
        <property type="entry name" value="RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21319:SF53">
        <property type="entry name" value="RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05495">
        <property type="entry name" value="zf-CHY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161219">
        <property type="entry name" value="CHY zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47986">
        <property type="entry name" value="DEATH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161245">
        <property type="entry name" value="Zinc hairpin stack"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50168">
        <property type="entry name" value="DED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51266">
        <property type="entry name" value="ZF_CHY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51270">
        <property type="entry name" value="ZF_CTCHY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="272"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="327"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="490"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="567"/>
            <end position="662"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="197"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="272"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="300"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="329"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="508"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="529"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="619"/>
            <end position="651"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4021934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="860" mass="97525" checksum="7DA0F9A588B36569" modified="2020-12-02" version="1">MEVYLLPFGPASDHMNLLVICETARQKCYVILTLSGGRNVLVYSIVQDIKFQNFQIESLRNYTRIKTVCILEYWFNPVGCAPDNFGINCSHLIVMNINTAIIFINQIQALLSSTNFKSDVCKRDQATQTFDGNNEFETCPDGLNCETEKNNRMLMEENVAVKQQLLEKDELIKEMKSQFACEKRKFLKMKYEYSIEKKNISEKNKSLENKLEQLKDIYGNLQKEYKDTLLDFGRLSVESDSKTNLGEKSETFQKLFSPKLSASLVVNMAGNSSSHFSPRSSINSAVQSNSVQSEDEKKPLPALSLPSPSGEQSVGASRELVELNACQGDHQSNGSGAQNHNQCSNVRPNNKKIDVSLDSPPFPTEVHERSNAQPLGLLNEPSSSVNAHVYNVYRLLLLTISDRLLYSDVFKLKEWAKEKFSVESYLCPSKVILQLDQKGVINASDLGQLRVFFESITRFDLVYLIDEFYNGDYDKLRKLINQHKSINNSQEREANLNRVHSSRVLPPDNNTPRSPLRSNTVDRVGNVETFEQPSTADENNGVSIVRNCQRTENVQQSNVAGRNVATISGNRFSTHENSKDVPDDDAVNHTKGKRGHKNKESTNDVTVTTRKINGKKTPNAEQPSSQRRPESNQPSSHGSQNRPAQYNGSSQRHPDDHFHGPRNGDIQDNWLCNHYKRRCLVKFECCNKYWPCHRCHNNESTCGRMKLKSRDTTMVKCVECGKEQQFGENGQFCVSCNTQFANFYCGLCKHLTGNDDHPYHCDKCGICRIHGDRSFHCDVCGICLDVQLRGNHKCRPDSAHDECGICLEDAFTGCQILPCSHKVHKECANRMIRNGITRCPICRKSFAHKLERRPVGRRQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IUW6</accession>
    <name>A0A6S7IUW6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Active breakpoint cluster region-related -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011572">
        <property type="protein sequence ID" value="CAB4021697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IUW6"/>
    <dbReference type="OrthoDB" id="2155291at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00160">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.900.10">
        <property type="entry name" value="Dbl homology (DH) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037769">
        <property type="entry name" value="Abr/Bcr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035899">
        <property type="entry name" value="DBL_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000219">
        <property type="entry name" value="DH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23182">
        <property type="entry name" value="BREAKPOINT CLUSTER REGION PROTEIN BCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23182:SF1">
        <property type="entry name" value="RHO GTPASE ACTIVATING PROTEIN AT 1A, ISOFORM E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00621">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00325">
        <property type="entry name" value="RhoGEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48065">
        <property type="entry name" value="DBL homology domain (DH-domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50010">
        <property type="entry name" value="DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="423"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="228"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="263"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="304"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="435"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="706"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4021697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="706" mass="79354" checksum="4F5668BCD8053D9A" modified="2020-12-02" version="1" fragment="single">MDTDIIGETKQKFSIAWKDHFASRELPSLDFLNDSDQAYQQFRHSIAVINDCFASVKVEVFIVKFLQTYILSEGKCAADLKLGFNVGEIIADLESIFPGKTHVDGSGNETDVTNRSLGETTAKSTHSSEGNEGNSIDKTSTSDSAKPTVKRDLRDKSNAIESQNSVKHDNEQSMSVSEAKPNDKFDKSANKTEDETKLSSPPTKERPSAEMDAQIVNNEKITIFTPIPDEHIENKSDETKNESSSTPDSSPVKVISGKLNDTGLDSSLGKQSCNMVHVESTPQNGTDDLQSSGNELDNADGTFTEETFSSDSCSNSPDPVHGNVFLQDGVHGSDDILNIMPFSARSTSFYSVDPSLESSNFGTAEHIYEDIDKYRTNTDEEYVGETRRHLSQSEVMLKKTFSVGALSKPKDSISDDVFISQGANSPKVDEKQDRNSSPGALSLPENSTNVHKRSSSDAGVSYHIQQHRERRARRRKELGFQIIDQQGVSIADGRSKNIQSVLEQAVDDEHKLHMRKWVVAGLVDSERGYLEALEKLTKPMKPIKASLTTSSPICTVFEFHRIYDKVEELYKIHGHFLSEIEERVSNWNLKQIIGDLFTVLMDQFPIYQHYIRNNKAAMETIEKCKISETFKNIFTQEITLLSTQEIATYESLFRKPLERIARYILAMDDLIKYTPEEHPDYEMLQSFMKRAQEFLEKNYSQQPEVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IV56</accession>
    <name>A0A6S7IV56_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Nucleoporin seh1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A025916</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Lysosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus envelope</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the WD repeat SEC13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011218">
        <property type="protein sequence ID" value="CAB4021000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IV56"/>
    <dbReference type="OrthoDB" id="364224at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005764">
        <property type="term" value="C:lysosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031080">
        <property type="term" value="C:nuclear pore outer ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035859">
        <property type="term" value="C:Seh1-associated complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034198">
        <property type="term" value="P:cellular response to amino acid starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904263">
        <property type="term" value="P:positive regulation of TORC1 signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037363">
        <property type="entry name" value="Sec13/Seh1_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11024">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11024:SF3">
        <property type="entry name" value="NUCLEOPORIN SEH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0458">Lysosome</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <keyword evidence="5" id="KW-0853">WD repeat</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4021000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19426" checksum="485CCE49D4E1FF3B" modified="2020-12-02" version="1" fragment="single">HEIKCKLSCSCISWNPSRNHAPMIAVGSDDASLSSGGKVQIQEYNEASRKWQRVETLNAITEPVHDVEFAPNLGRSYHLLGIACNDVKIATLEPLGKEITSSARFAVNMVAQFKEHSKVWRVQWNVTGTILASSGDDGSVRLWKANYLDNWKCIAVLKGDGNPAEILGSSVPSGLMST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J049</accession>
    <name>A0A6S7J049_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A000958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012465">
        <property type="protein sequence ID" value="CAB4023363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J049"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22437" checksum="BB1DDC19338A99F8" modified="2020-12-02" version="1">MEISSAAIESMPCKDLQAGRSEVDVPTESPLELGSANEKQQTSLDNFFSSISSIHDRSSLDYIADRIGEKVSERLKENTVLSQKQATAAADTSTCTSEARNLTDFLHDEQEFEMIGENDMWVLRCKMCYSYLSNPVASSALKHRPTGESLATGITFSLDEYSKHCQGNCAEWRRLKHRMLAHLSGSSKTHQNSSQYMKEQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J3Y1</accession>
    <name>A0A6S7J3Y1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Zinc finger 106-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A055381</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013435">
        <property type="protein sequence ID" value="CAB4025138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="10002522at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017124">
        <property type="term" value="F:SH3 domain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018391">
        <property type="entry name" value="PQQ_b-propeller_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042622">
        <property type="entry name" value="Znf106"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14435">
        <property type="entry name" value="ZINC FINGER PROTEIN 106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14435:SF2">
        <property type="entry name" value="ZINC FINGER PROTEIN 106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00564">
        <property type="entry name" value="PQQ"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043568491" evidence="3">
        <location>
            <begin position="19"/>
            <end position="1662"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="24"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="120"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="248"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="304"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="425"/>
            <end position="684"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="701"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="845"/>
            <end position="881"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1039"/>
            <end position="1202"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="999"/>
            <end position="1026"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="26"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="39"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="53"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="67"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="122"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="315"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="345"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="394"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="451"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="496"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="513"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="533"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="608"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="626"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="653"/>
            <end position="677"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="770"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="855"/>
            <end position="866"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1059"/>
            <end position="1111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1130"/>
            <end position="1156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1170"/>
            <end position="1188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4025138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1662" mass="182815" checksum="86D7BB2EB85EA1D3" modified="2020-12-02" version="1">MIRSGILAKVFYLFVVHSLTEDQAMSRKKATRRKVKATDSYSRHSPNSSTMDHAQKSSEEYLPHASSFHSQQDVSVDSTAPQAIQLRSLMPAHWNEQNHSGSTLSSAVKVKTEPNVGLEHQACSNESNRQHTPTSKQDNTSTFKPAKIKRERLSLDSSVSVRSTHQFPTMDLGSHLEQSLSSFKPGPDLTWSQLLEAKNLPKVHIPERLQSNAGIKMEGPDSGSGMVLCSTDDDTDNLPLALRVGKKSTVGKSNTVSAKEKASLTGSSNRFSKNHDGSSGVLDLSKKAIPPEIRRVLASKYGVAKRHEEGHSGSVVPNLNKSRSRFTQSSKKAGVIDSEDEGNNRSETASSSQKLKASSDMPKSKSVSPTEYPGSIPLPAKVLNRRRFSSSTYEGRRSTPSFDHREAVGDKLQSRGLVDLGCHYVNHLKDSPPPGRNSRSPYEESVGPTDLGREDSTILDKGVMREAKSMRQSPFDDRNAGSSFAKGLPQGVRRSSFASDSSETSRSLNLRGETLHHEGAKKLNDARSLHVTGRNSKSPVDSRNSEETMVDLGPSTSRFGHRRDSFHSIRSSSRSPLDDLTASGSGPMIDLNTSTNQLRVPQMRGGRSPFSSSHSSETPNHSQQRNTKERMIELGSDKPLRDYHNNAKHPNESSKYTLPRSSSRSPIRTERSTNTPPNIKEPMIELGSGKQFHGYLENAKHAISRSSSRSPVRTDKHSGTYSPNEPMIELGSGKHDDQTNTKHAAQRSRSRSPMSTDLASKSDHPEAMIQLSSTVQQRSRSRSPASGASGEAMIELSSTNPLHERRGAPRMKPLDAMIDLNSMENPASPLSPGFGALPFSSFPSQVYRPPNRPRYPYKSKHYRGRPQRGTSPALGSPGFSPRLPFGPHFNYPPNQRYRMPGAPMIELGSLGKSSEFQGMVSSRSSEMPGRSGTIPKRRHSMDYQSLGEPTKKARVTVPDQRLEVKPGGSGVRLNVSDLLLLEREEQKYIQDLSLVQSQLTEIRFKMQRMQQDLDKLQSSEMEIKQRIDLVRGKRVQILKDAQGHHESQRTSTALGDSDMSTRKDKEGDIGTRRGNDGDMGKRRDNNGDIITRSDNEGDIGTRRNNGDKGTQDDNDVAAYNGDNLGFHSKRTGDAKESAPESNRKGSRDFPEGKNSEFRGSYNAEGSSFEQTRDMRKNSSEKNSDKNNERISSYAGSGSKYRNLADDRNLAPLELVLRDAGYPSNMSDPPRPILSTNVPTVQHYPITSSGNDRSYHTTFKPGRSHWEKSSPGTPQEKLSTEIETFESSNGSTITLNSDGTLVLHKNAAETSQVARKCSNPTILQEACVDFDAKKTEYRGITSDQSKQFLGCLEITSTTDEPLASEDDGPKEVLAEKERECLASKLRCDQDRISSTVPSLEIEQDDSNTGSAGEMNFIGHTDAVCCILPYKRKLFSASADRTVKAFDMKTGECIKTFKGHELAVNCLQISGLGDKTDRLFTGANDHSVRAYNIKSGACTHKFAFGGRVMCLHVAFGKLFVGLSSGFVAVIDLKTNECIDQFNCHEPSRISCLSSATEGQRSLLATGSFDSTITIRDESSGLLLRHIKDHKLTVLCMQVVENILYSGSADTVVQSHNINTGELVRSYTGHTMSVSGLQALGGVLITSSLDRIIRCFDIKVRVSLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAV9</accession>
    <name>A0A6S7JAV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073316</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014745">
        <property type="protein sequence ID" value="CAB4027341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAV9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="33984" checksum="E9CFCC011E163EA7" modified="2020-12-02" version="1">MNKIVSTNRLGVELSHTRSNSLFMKINKDRDCTDSWPTTSELKVIAAKELYEDNTEILSESTPTQSNCNTNGKEVFGIRPKKRTMSMFIMTSHTETPAEVLPIKGFTCEILTQLQAYIQQQIVKVSKIEENDQVTSSTDNTSCLILEIIKQALAWWAASFTTQTVLGEKCLKKKEIPSLLSNNCNNRASELAEHLLELGINIQNRTIDDVADKLRELVVNEWQGEFQEDYAHFFRSNDQVHDGVAFMQESEKYLSKECDTSATPAFLACYNAGGSHYNAIILDEIDLTKRPIHQHQRTAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JBS0</accession>
    <name>A0A6S7JBS0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022815</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008347">
        <property type="protein sequence ID" value="CAB4014542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JBS0"/>
    <dbReference type="OrthoDB" id="6432957at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043736396" evidence="2">
        <location>
            <begin position="20"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4014542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="105" mass="11719" checksum="D092168B8D06BE7D" modified="2020-12-02" version="1">MNSLVGILLLVLFTTAVFAKYHRKKFHKDDPPRCEGDRDSPCFQCLYSCMFCVETWGKHQYDGHACAMGCRSSNGENKDKDCSKHMKTGGSSHGARSYSSFNALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JEW7</accession>
    <name>A0A6S7JEW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A000607</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017131">
        <property type="protein sequence ID" value="CAB4030776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JEW7"/>
    <dbReference type="OrthoDB" id="5983725at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000781">
        <property type="term" value="C:chromosome, telomeric region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031509">
        <property type="term" value="P:subtelomeric heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013136">
        <property type="entry name" value="WSTF_Acf1_Cbp146"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32075">
        <property type="entry name" value="ISWI CHROMATIN-REMODELING COMPLEX SUBUNIT YPL216W-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32075:SF6">
        <property type="entry name" value="ISWI CHROMATIN-REMODELING COMPLEX SUBUNIT YPL216W-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10537">
        <property type="entry name" value="WAC_Acf1_DNA_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51136">
        <property type="entry name" value="WAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="224" mass="25557" checksum="4FBFCBFC0D278A00" modified="2020-12-02" version="1">MPLLKKKIYNLTPSPKNLKASEELFVIPETKECFRSYDEYIAKVFLYSSQNWSCQYTGKSGLTYNDALSSEMEALKQLKTFPNHFKEPVLKCVHKAKGNMKEVTDKCMKFLTTHYCLQEDVVIVNTKSRKKSPGVIIEVLKNVDVDADEKENGGVNPAGTQVSRWKYSVQLTGSDVVLKDLLPDEIKRKTKLPSKGLLKMFIKHKAERLPVDGKDIWLLKVNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIV1</accession>
    <name>A0A6S7JIV1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A062710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007118">
        <property type="protein sequence ID" value="CAB4011348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIV1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="175"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="247"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="436"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="175"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="247"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="282"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="305"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="340"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="354"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="377"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="447"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="527" mass="60040" checksum="1E668E2B28F4FB3C" modified="2020-12-02" version="1">MSNLELDRYIVFIANIPDEVTMNCFLFQIKEGQLPVKYGEFKVLHGNSPLRLNEKVLQNVHSGAESFNQITRFEKKMKYIRNKDATENLDISNKNENETSSYTVGNRVQHVTSVSVEREKTKNRYTQEHTTGITKKLDKDNHTPTPDRPSPRHPGFTGYGSQDIKQKINTTASNGCTIQTNQRDPEQNNQSNRGRVTEQSTSATRNGLKLSSTPHSSWQPQDNKTTTPTTSDRGEKNENFQTILKNTQKQQEHQGTTPKTNKQASERNSNFPTASQGMQKQWTDKEKTPTTSDRDAKYYNYPTTPEDRKGQREHQCSRSYEYQTTPKDKQKQRHLKETTPKSSESGKLASTSQKQREQHIDGVGKKDRYPNTRRTTEGAQHLQSPSVKYKGSDGRAMNVIVNQPLGFGGSGSLKRKSGDYDNVKGHIELPQRKSSRLNSDYIPPSHDTPEVIHERSSIPSGTFKPPEVRHKIKQTGEISDIETTRSSWTRWYNSVCCRMSKLTRNEPEVEEIGLNKVEDNDGTKVYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JMF1</accession>
    <name>A0A6S7JMF1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007842</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019542">
        <property type="protein sequence ID" value="CAB4033776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JMF1"/>
    <dbReference type="OrthoDB" id="5972840at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="32072" checksum="765C8601584034D8" modified="2020-12-02" version="1" fragment="single">DAYCFQRLPAWAYEDKTEILATDSAGNVYKWKFNSGNATSHAAWQAFHSHIDTAAASVKNASPWNPVVLKGNSISINQDSFMYRTQGSTKSVLLDDDNCDCISTLNIGGSLCGAGAGKGNDYGVDNLYDPTCGVPKPSNGLRLYYRTENEMSFTAYGMEWTAFWWWTKDATWPKTENDVLGYEYGHSKEYDVYCFQRLPKWAVEDFTHLLAVDTAGNTYIWKFSSSNPTAHAAWQALHDHQITLATKIQNNRAWNPQVKKGIKPKKDQDSFQDQDSLRCKIILTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JMS3</accession>
    <name>A0A6S7JMS3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A049554</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009682">
        <property type="protein sequence ID" value="CAB4017721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JMS3"/>
    <dbReference type="OrthoDB" id="5957838at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="44"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="146"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="44"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4017721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="185" mass="21173" checksum="2112BCB96256F72B" modified="2020-12-02" version="1">MALKLKRRGRWVQVRDYLDEKFGIKVNFSDHHNTYYSSYKYVTKEDSNPEHSDSHPDLQNAPRTEQAIAGKKRKGRKSSGSASSQKQRKRRRDRALTVYDVSQIIQQRKISKRIELVCLAVQQKREGNTALAEFIANKGENAVDDALAVAKEFEEAEKKLARMQKSRVHLLTEAKEEGKCVAGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JNU7</accession>
    <name>A0A6S7JNU7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase from mobile element jockey</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A049022</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018547">
        <property type="protein sequence ID" value="CAB4032611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JNU7"/>
    <dbReference type="OrthoDB" id="5986287at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="10"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="264"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="412" mass="47334" checksum="AFBA479FCB4FB742" modified="2020-12-02" version="1">MLLPAKHPIIDLIVRDVHHRVKHNGIRDTLTTTRERFWILRGREVVKRILKKCVVCRKAEDDPPFTNVGLDFAGPLLVRPDKEAQSSIESLLKVYVLLFTCASTRGVHLELTPSLSVSSFLQAFRRFGSRRGLPSLLVSDNAKTYKSASKEIRNLSRAEEVWRYLSNNRITWQFIVEKAPWWGCFWPLKKVIGRASLTYEELSTLVVEIEGLINSRPLTYVFDDDETCTSPLCPSHLIYGRRITTVPNSQHYEVISTYQSLTKRARHHRNLIQQFTKQWRTEYLLGLREQSRLMAKNNKTGNISISDIVILRNDKTSRCFWKLAKVEQLLHGEDNLVRAAVVKVLGGKIDKAQLLRRSISHLIPIEVKHPLSEVKNKSEATISEPPVSLNTRPRRMAAVIGELKRAEQLKHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JVX0</accession>
    <name>A0A6S7JVX0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">UBX domain-containing 7-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022634">
        <property type="protein sequence ID" value="CAB4037006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JVX0"/>
    <dbReference type="OrthoDB" id="270602at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02958">
        <property type="entry name" value="UAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006577">
        <property type="entry name" value="UAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050730">
        <property type="entry name" value="UBX_domain-protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23322">
        <property type="entry name" value="FAS-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23322:SF6">
        <property type="entry name" value="UBX DOMAIN-CONTAINING PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13899">
        <property type="entry name" value="Thioredoxin_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00594">
        <property type="entry name" value="UAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="154" mass="18102" checksum="9C25E16C68884A5D" modified="2020-12-02" version="1" fragment="single">TRGVLVEGPYSRVSRPKRRGNQSVFDAFRDFQAEAREQEQQLRGKVGKAKRKTLKDLFKPPLDIMHKGTFETAKVAGEQERKWLIVNIQDSKEFKCQQLNRDVWSNEAVRNIMAEHFILWQVYHDSDDGDRYIQFYHVTKFPHLAVLDPRTGIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYU9</accession>
    <name>A0A6S7JYU9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A013771</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020985">
        <property type="protein sequence ID" value="CAB4035374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYU9"/>
    <dbReference type="OrthoDB" id="5990422at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015630">
        <property type="term" value="C:microtubule cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026657">
        <property type="entry name" value="DDA3/GTSE-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032768">
        <property type="entry name" value="GTSE1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21584">
        <property type="entry name" value="DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21584:SF9">
        <property type="entry name" value="G2 AND S PHASE-EXPRESSED PROTEIN 1 N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15259">
        <property type="entry name" value="GTSE1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="122"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="285"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="156"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="203"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="285"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="310"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="332"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="365"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="421"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="452"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4035374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="480" mass="52671" checksum="10980DDF1C0333FE" modified="2020-12-02" version="1" fragment="single">MEEIHRDLSSDFLDNEKFDFDLAFSPNINQINEPQDADDEEVFFGPVGFTEQCLATRTKTLQDENNIKPLSPLTGEQVVEIFKEATKVALRLEKLSSTQSTDSTSNSSKSSLSSSILKLSSAGSESPSWLTGKLSSGSSQGTSLNQFELEFDKENTQPLSMSNENFSSDKNKHTASANKSEQIAPDMFEKERIVNYTDGKIEQNGNFDKGSTSSSPSKNEKHVVLGEQLISENTTKSKTDQNGDTCKANIQQLPTEENLNVAKNKHCATLSYKQINAEKVLKREVTEQKEQEGMKEIKSNKIPMARARPRGPGLPRPGLRNSRLPKSKNTEKSQSAFNSPIRSTGSSKKRDVAMKNADAVPLEKPNSQTDRPSTEKSGTSNSSNSKLQKSVPVKLPQDASKISSRSAKTLAKRKIFNSSESLDKFGTKDCKSKLPVSGSQIPGPRSRRRRSSSLSSLDSIQSSASSQTSQDDNASSKLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9T1</accession>
    <name>A0A6S7K9T1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase from transposon BS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013307">
        <property type="protein sequence ID" value="CAB4024923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9T1"/>
    <dbReference type="OrthoDB" id="5869280at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="341" mass="38685" checksum="DD502361270810BA" modified="2020-12-02" version="1">MADEAEIVKNSGKYKASRVKNHSKNDTCVWDRLKDFPGQHFVNENGQLRCNACSEIISIKKSSIEKHIQSKKHVNGIASIAKSKKENQTILECLKKQDIRDRASGSTLPEDMRLFRFELVETFLLAGIEISKIDIMRPFREKYARHRLTGASHMKDIIPSVLEKEREKIKAEIQTIMPNFFGKRELANQCALTVIHDGGEKFSVQFHTIVRAFKVARLCCPVQVQQLKPDPAALEEFSNFPFVNDNTIANLANELPDYLAAVDGVTLGNEDEKVTWWAAQRETLPHWSALVKKLLLIQPSSAAAERVFSLLNSMSSQQGNSLEDYIEASVMVRYNSTQRKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KCQ4</accession>
    <name>A0A6S7KCQ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A012942</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027684">
        <property type="protein sequence ID" value="CAB4041041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KCQ4"/>
    <dbReference type="OrthoDB" id="6125049at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000004">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="574"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="678"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="583"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="681"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="708"/>
            <end position="722"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="723"/>
            <end position="732"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4041041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="732" mass="84978" checksum="E5F295E7D6103F8A" modified="2020-12-02" version="1">MTLESVLQRANEKNLRFNGDKCEFDKPSITFYGHVFSKQGISPCPKKIEAIKSLKPPANVSELRSYLGMITYCGRFIQDLATLTAPLRKLTKKDIKYEWKESQQRAFDTLQERLNEKTTLSYFDPSKDTKLIVDASPTGLAAILIQNTPSQNDETVVAYGSRALTEVEQRYSQTEREALAIVFGCEHFRLFLYGIHFTIYTDHKPLVSIFQNPNSHCPARLERWRLRLQSYNFQIHYRPGHDNPSDYMSRHPMNTTSMTSQDSENSEYYIQFIAESTTPKAMTLQQIREATQNDPTLQHAAHIIQKNLWHTLDTTTFSKDTDIDIRELKLLRNIKDELTVSNDKNIILRDTRIVIPKSLRADAIRLAHVGHQGIVKTKSLMREKVWFPLIDSLVKSAIDSCIPCQATGRPKPPQPLLMREIPKENFDTVYIDFLGPLPSGETLFVLIDGRSRYPVTKIMKKTDAPHLIPCLDEIFATFGLPKKVISDNGPPFQSKEIKKFMDDNGIQHKTITPLWPQANESETFMKPLMKAIRTAHLQKQNWRRTMQEFLLNYRATPHTTTQVAPATLMFGRNTRTRLPQTDTKTDKNALDHSVEQRDKEQRQRMKEYADRRRQSKTTTMNIGDYVLVRQQKHNKFTPNFDPKPLRIITVKGTMITAERPGFAITRNQSFFKPIKTTGLSSEDEEEMEDSDEHEEQRDIGDNENNNNHNRDEQQNLERQYPRRERRRPNYYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KIU1</accession>
    <name>A0A6S7KIU1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A037048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033803">
        <property type="protein sequence ID" value="CAB4044018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KIU1"/>
    <dbReference type="OrthoDB" id="6004676at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13617" checksum="D7DA03AF08A75496" modified="2020-12-02" version="1" fragment="single">TTLDAIDQETGVPTESSKHTRASVHGTVKEMIRILLKKEPFKYTSGRTLVSFPNVKKTPLEAVDVIALNKWLTNHKKSLSKDLFATVSNDESNEDGDTDTETLIPAILIVMMMTICKWYNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KUS9</accession>
    <name>A0A6S7KUS9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">JMY/WHAMM middle domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A043117</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012851">
        <property type="protein sequence ID" value="CAB4024119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KUS9"/>
    <dbReference type="OrthoDB" id="6284683at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071933">
        <property type="term" value="F:Arp2/3 complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034314">
        <property type="term" value="P:Arp2/3 complex-mediated actin nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031738">
        <property type="entry name" value="JMY/WHAMM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23330">
        <property type="entry name" value="P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23330:SF10">
        <property type="entry name" value="WH2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15871">
        <property type="entry name" value="JMY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="JMY/WHAMM middle" evidence="3">
        <location>
            <begin position="48"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="373"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="413"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="457"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF15871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4024119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="613" mass="70141" checksum="574CB973D222B902" modified="2020-12-02" version="1">MAYVPPELCKKMEEYFKDAFNMCGWKLFSSVFFGEPVYDDDYTISSLELQRQHFVKGIEQLLQEFQQHLVGKRKASNTDQLSEWYDALWDCLAKVTDAEGKLLAFDCEPYEELRDIAQRERSECASMFNQQSMTASTFQDNAQNFSQWEDQYIESVKKINEFRIAHFKISLPRLQQMFQLLRDDSEKFTNDNKNRTVATKLYQLEKKSFQNEIEMLNCTNQLKILERDKIRRDALALDEDLTMPQRLNEKEVQVYEKQCEILATSFDIQDKNEKLVRLDLQKMASEVTGEELERLKGNLNKSLTTISRKKAILRNKTKICEGEIKKLTRQGKEKQEQYVTHHAVQMKLEKRREQDEKKKEVRLEERQKALLRLKEYKKKNPKAKDVKPPRYQAPSVRKQEEKMKNTPNLDTNASARPTTATSTPLAKPVLRKDESPKENGSIGSNNTSSPPGAVYAPPQPPGTICPPPPPPPPGAVCPPPPPPPPPPPGILPPPSFSAVAITGQRRNKSPAGQASSLSQQTLDLDALKIARCRLKKQDNTTPAVNNNQKGFPSGNELTRAIQNVKLRRVVSQEKPAELSPDGAEFLKKALERMNKFTNLSFDDDQGDEDEQEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L2H5</accession>
    <name>A0A6S7L2H5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="16">Endonuclease V</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A011919</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Endoribonuclease that specifically cleaves inosine-containing RNAs: cleaves RNA at the second phosphodiester bond 3' to inosine. Active against both single-stranded and double-stranded RNAs. Has strong preference for single-stranded RNAs (ssRNAs) toward double-stranded RNAs (dsRNAs). Cleaves mRNAs and tRNAs containing inosine. Also able to cleave structure-specific dsRNA substrates containing the specific sites 5'-IIUI-3' and 5'-UIUU-3'. Inosine is present in a number of RNAs following editing; the function of inosine-specific endoribonuclease is still unclear: it could either play a regulatory role in edited RNAs, or be involved in antiviral response by removing the hyperedited long viral dsRNA genome that has undergone A-to-I editing. Binds branched DNA structures.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="15">Monomer. Interacts with PABPC1; the interaction is RNA-dependent and stimulates ENDOV activity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Stress granule</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Nucleus</location>
            <location evidence="3">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the endonuclease V family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018548">
        <property type="protein sequence ID" value="CAB4032612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L2H5"/>
    <dbReference type="OrthoDB" id="20018at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010494">
        <property type="term" value="C:cytoplasmic stress granule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016891">
        <property type="term" value="F:RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003727">
        <property type="term" value="F:single-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06559">
        <property type="entry name" value="Endonuclease_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.2170.10:FF:000002">
        <property type="entry name" value="Endonuclease V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2170.10">
        <property type="entry name" value="archaeoglobus fulgidus dsm 4304 superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007581">
        <property type="entry name" value="Endonuclease-V"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28511">
        <property type="entry name" value="ENDONUCLEASE V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28511:SF1">
        <property type="entry name" value="ENDONUCLEASE V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04493">
        <property type="entry name" value="Endonuclease_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 17" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00056032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00061268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00061971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00071695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4032612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="278" mass="31458" checksum="0EA1AEF790ADC031" modified="2020-12-02" version="1">MVLVYISPSSIREQCELKKKLIKEDALTWFDKDSNNEENILLNYVGGVDISFVKGDDKHACSALVILSYPELEVVYEDYEFVHLTSPYIPEFLAFREASFLDDLITKLRKNNPELLPKVIFVDGNGVLHPRGFGVASHLGVISDMCTIGVGKTLFHVDGLEKNSEHMEKINQLHKAGDFFLLVGDSGTTWGAAFRSTDTSKNPVYVSIGHKISLETALKICKLCCKHRVPEPIRQADIRSREFLRQHYETMVTKCCTDEEHCGSEGVAKSWWDWCLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D5N6</accession>
    <name>A0A7D9D5N6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">ADP-ribosylation factor 5B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A042582</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the small GTPase superfamily. Arf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000023">
        <property type="protein sequence ID" value="CAB3976988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D5N6"/>
    <dbReference type="OrthoDB" id="2011769at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:003500">
        <property type="entry name" value="ADP-ribosylation factor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024156">
        <property type="entry name" value="Small_GTPase_ARF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006689">
        <property type="entry name" value="Small_GTPase_ARF/SAR"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11711">
        <property type="entry name" value="ADP RIBOSYLATION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00025">
        <property type="entry name" value="Arf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00328">
        <property type="entry name" value="SAR1GTPBP"/>
    </dbReference>
    <dbReference type="SMART" id="SM00177">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51417">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="8" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9 11 13" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="10" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0519">Myristate</keyword>
    <keyword evidence="5 11 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="24"/>
            <end position="31"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB3976988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13586" checksum="E045DB30FE819403" modified="2020-12-02" version="1" fragment="single">MGFLFSKLCSLIFSSEEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVWKNMHFLMWDIGGQDALRSSWDTYYANTEFVIIVIDSTDRERLAVIKEEIYKMLADEYYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D802</accession>
    <name>A0A7D9D802_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cysteine-rich 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A015511</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000087">
        <property type="protein sequence ID" value="CAB3978073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D802"/>
    <dbReference type="OrthoDB" id="25654at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008630">
        <property type="term" value="P:intrinsic apoptotic signaling pathway in response to DNA damage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.110.10:FF:000025">
        <property type="entry name" value="Cysteine-rich protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.110.10">
        <property type="entry name" value="Cysteine Rich Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001781">
        <property type="entry name" value="Znf_LIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46074:SF3">
        <property type="entry name" value="CYSTEINE-RICH PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46074">
        <property type="entry name" value="CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00412">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00132">
        <property type="entry name" value="LIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00478">
        <property type="entry name" value="LIM_DOMAIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50023">
        <property type="entry name" value="LIM_DOMAIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0440">LIM domain</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3978073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8383" checksum="EFF1F11DCDF807BF" modified="2020-12-02" version="1">MPKCPKCNKEVYFAEKVQSLGKDWHRPCLKCEKCGKTLSSGGHAEHEGKPYCNKPCYAAMFGPGGFGRGGTESHKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAC6</accession>
    <name>A0A7D9DAC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Domain containing isoform 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BtpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000327">
        <property type="protein sequence ID" value="CAB3980817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAC6"/>
    <dbReference type="OrthoDB" id="10045006at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005137">
        <property type="entry name" value="BtpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00259">
        <property type="entry name" value="thylakoid_BtpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21381:SF3">
        <property type="entry name" value="SGC REGION PROTEIN SGCQ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21381">
        <property type="entry name" value="ZGC:162297"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03437">
        <property type="entry name" value="BtpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005956">
        <property type="entry name" value="BtpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3980817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="29631" checksum="7825BD77D3422B34" modified="2020-12-02" version="1">MATGNAISKFSHLFGRRSAVVIGMIHVDALPGTPKHSQSVSDIIAKACQEASIYKQAAVDGIMIENMHDTPYLNQNVGPEITATMTAVCYEVKRTVPNIPCGVQILASANKQALAVAKASGLDFIRAEGFVFSHVADEGLMNSCAGELLRYRKSICAENVLVFTDIKKKHSSHAITSDVNLLETAKAAEFFLSDGVIITGTATGDPANHHDMLEVKKSVDLPVLIGSGVTSENVNQYIQASGLIIGSYFKEGGHWSGPVDLSRVKSFMAKIERLRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DCB0</accession>
    <name>A0A7D9DCB0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposable element P transposase-like RNase H domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A055214</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000485">
        <property type="protein sequence ID" value="CAB3982275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DCB0"/>
    <dbReference type="OrthoDB" id="5972980at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="1">
        <location>
            <begin position="123"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="179" mass="20822" checksum="184F48FE3EC38048" modified="2020-12-02" version="1">MSEPVKSKAPLTTTSKSRLVATVQKKRLVCKELESRLTDLEKEIAKNSISVDENLEKDIFSILADRSDEDVSPHMKFFWEQQRKLLQTPTFGRRYHPHLIQYCLSIHAKSPAAYQELRESWFYQRYVVISFDEMKIQSKLVFNKFTNELIGFVDLGEEELNTSSFGSHELATHALVFFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DFM7</accession>
    <name>A0A7D9DFM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A022682</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000765">
        <property type="protein sequence ID" value="CAB3984634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DFM7"/>
    <dbReference type="OrthoDB" id="5984733at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023779">
        <property type="entry name" value="Chromodomain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00598">
        <property type="entry name" value="CHROMO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3984634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="360" mass="43094" checksum="801D4684AFA3F4A8" modified="2020-12-02" version="1">MAEKYLSQLYYNPEHPASFGGVDSIYRVVKEEGKHQISRNRIRSWLKKQDTYTLHRPVRFHFKRNRVLVGGFDEQWEADLVIMDSLSKQNNGYNYLLTVIDVLSKYAWVEPIKTKTGESLVQAFGKIIKKGRKPEKLHTDKGTEFTNRKFQKFLKENNIRFFTTHNETKASIVERFNRTLKGKMWKYFTAKNTVKYIDIIQKLVKSYNHSRHRSIGMKPADVNKDNEGFVWQKLYGEEPHKSIYYKFNIGDQVRISKARRTFKKGYLPNWTEEVFTITKRVPRRPPVYRIVDHDSDEVEGVFYEEELQKVTKTQDDFYRVEKVIRSRMRNKRKEYFVKWLGYPEKFNSWVPAENVKDINK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DH73</accession>
    <name>A0A7D9DH73_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000901">
        <property type="protein sequence ID" value="CAB3985676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DH73"/>
    <dbReference type="OrthoDB" id="5982475at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="987" mass="113538" checksum="D9DEF3FC67C9E90B" modified="2020-12-02" version="1">MNNDTPLFGSPNNLHPSLLNNHDQTHYTNEIGLNCYLLNARSICNKLDEFQALVFGENLDVVAVTETWLKPDIYDGEILPGNQYTIYRRDRADGRRGGDLLLCNHPDDVSDLSITQDIFDSDHFGISFRILTKVSRLSQIKRVIYNFKNANFDGLREALCDISWDDCFLDSDNINNSLEKWMKLFYSIVDQFVQKKCVSNINRSPWVDREIVLLLKKKNTLRRKAKSRDTVYLWAKFRRLRAEIKKLIKHKKKAYISNLGQDLKSNPKRFWSYYKALNKTNRISNTISYGNITATDSISKANIFNTFFHSTFNACDNSIYITVSHPLNDSMSVPCLSNITLDSEDVLKALHSLDIHKASCGIPSKLLKECSNAIATPLTRLFNESLSTGEFPSQWKDANLVPIHKTGRKSQATNYRGISLLEQLSKIFEKGVYNVVFEFFSNKITTSQHGFYPRRSCATQLTQVVHLLAQSMDNKQQVDLVYLDFAKAFDRVPHSKLICKLHLLGIRDPLLSWFRSYLYKRRHRVVIGGFASEWLPVTSGVPQGSVLGPLLFLLYINDMPEVISQGSYLPLFADDSKCFRVIFNASDQDRLQEDLNALYDWSIKWGMEFNVEKCKVLRVVRTRTIYDRQYALGSSHLSVVQSEKDLGVWISDTLNWNIHTDNIVAKAQKMLGLLYRTLKDIDDNSVKRLLYFTWVRPTLEYASPVWSPYKKRNINKIEKTMLSEKCFWKMYVQKHFDLGIKSDLSNEGPMAQWSGPVWTANGKVEPQSDGTWECLFSEDEEDDDDIYLIRPFPSMWNCRVFHPYGLDPFSGDVRSLQGFSRSLEILTYMRSEASRLGMHSESTWDEDHEICAVIFPWDKQELPTTLELLNGVFHFHPEIYNHYADLSPEGYSTLNENMLIFHIPQDVGLIHDCAIRPCLNSIFGVSAPKTDEPWRLRDSRAFYEWLQPIMCPSFTAYVGDDVFSPMALYMLTQLAPGWVGGALTSGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIX6</accession>
    <name>A0A7D9DIX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A054599</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000935">
        <property type="protein sequence ID" value="CAB3985890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIX6"/>
    <dbReference type="OrthoDB" id="1683831at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043379">
        <property type="entry name" value="ANKAR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46464">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46464:SF1">
        <property type="entry name" value="ANKYRIN AND ARMADILLO REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3985890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="18768" checksum="8A055BDC14888438" modified="2020-12-02" version="1">MLDNEQVCRSAAVALGYLSFNGSGGREMLMICRNTPGLYSALEQNLGSGKMCMEFVDSWRRAVNVGLPSKSLEINGGPPVPRRLPVGERLRRPMTTQSLPMCRREIVRREKKLGVRSCASAPVIASSFRTTNTRPKSQHFREGSSEKTKILRLRPSVENKMKSSLASAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DIY9</accession>
    <name>A0A7D9DIY9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A085997</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001002">
        <property type="protein sequence ID" value="CAB3986338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DIY9"/>
    <dbReference type="OrthoDB" id="10243531at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="31973" checksum="F1248AB591B9C9C9" modified="2020-12-02" version="1">MEMPTQMCLPVKSCKAVKCCCGKVCKGARGLKMHQRSCRVIDDLEDELQQQMTEALNDDNHEDNTDPVNPEISPLNTQENFPDLKRGIKLPKSPLQLSTANDFFKLTFLNHSITPDDLNNNINTMVTVVYNYFSGNFGHVDNNSSVEFERKYQTFSTKDLKKALKKLKLENGSILEIKFVAKKLRILLNKSNNTELHNSDSHASADIDHDNLIGKNFWGYVKKFFKKNTSSLPSFNLAQCTSYFTKTFSAISPNKTFNIPSWILKFASPQTPFKLDPPTYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DKW9</accession>
    <name>A0A7D9DKW9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Organic cation transporter -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A057725</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000907">
        <property type="protein sequence ID" value="CAB3985711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DKW9"/>
    <dbReference type="OrthoDB" id="5990185at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24064">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 22 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="116"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="135"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3985711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="15739" checksum="15591F353EB70196" modified="2020-12-02" version="1">MAIAFIASAISVAIPTNESSASVGGRVTAAIIAKFFITFSFDGVYLWCAELFPTVVRSTAFGTSSAAGRLGSFSASYIIWLIRFHAALPYSIMGAICLQAAVLGLFLPETKGTPTLETMDDMNKDEEGPGVVLLKSKDDMNENDKTEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DRW0</accession>
    <name>A0A7D9DRW0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009326</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002073">
        <property type="protein sequence ID" value="CAB3992549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DRW0"/>
    <dbReference type="OrthoDB" id="410104at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="21848" checksum="FFA9BA25A619C100" modified="2020-12-02" version="1">MHPRNDIDLESLWLSLENTNPCTWWREIKTLGGLSSQDCWYHQLLSEVNPTCSELAESYNNFLVAGLTSHFQPLDHKFHNDTGELMEVPDRCLVDTGKVYSTLRHIKVTKSPGPDNIPNKILKTFAFELAPVVTDIYNASMVQGNFPQQLKCAFVIPIPKVSPPGSIEDNLRPISLTSQTGKAGDGRFYVGFVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DS88</accession>
    <name>A0A7D9DS88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Echinoderm microtubule-associated -like 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A022079</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WD repeat EMAP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002034">
        <property type="protein sequence ID" value="CAB3992368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DS88"/>
    <dbReference type="OrthoDB" id="47802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000040">
        <property type="entry name" value="echinoderm microtubule-associated protein-like 6 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000044">
        <property type="entry name" value="echinoderm microtubule-associated protein-like 6 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055442">
        <property type="entry name" value="Beta-prop_EML-like_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055439">
        <property type="entry name" value="Beta-prop_EML_1st"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005108">
        <property type="entry name" value="HELP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050630">
        <property type="entry name" value="WD_repeat_EMAP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13720:SF33">
        <property type="entry name" value="HELP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13720">
        <property type="entry name" value="WD-40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23409">
        <property type="entry name" value="Beta-prop_EML"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23414">
        <property type="entry name" value="Beta-prop_EML_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03451">
        <property type="entry name" value="HELP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="EML-like first beta-propeller" evidence="4">
        <location>
            <begin position="53"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="EML-like second beta-propeller" evidence="5">
        <location>
            <begin position="327"/>
            <end position="553"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006489"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3992368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="576" mass="63841" checksum="145C16ABC0086F2E" modified="2020-12-02" version="1">MSDRTAPKSQLRLEWVYGYRGHQCRNNLYFTSSKEVVYFVAGVGVVYNVKGNSQRFFLGHNDDIISLALHPEKQLVATGQVGKDPYICVWDAKNCQTVSILKDGHQRGIASLAFNNAGTHLASVGLEDYHLICIWDWKKGRLLASAKGHSDRIFDLHFNPNVDNQLVCCGVKHIKFWKWQGNSLNPQKGIFGKGGEIQTMLCLAFGTNGTTYAGTLSGDIYKWEKNSLTGTVQGHEGAVFTIYKSEDGFASGSKDGSVILWDGDFKPITKIDLLNSVIGYKGLSVRSVCWVADKILVGTNNSEIYEVLASNKESPRTLVQGHAEGELWALAVHPKKAMFATGSDDQSIRLWSLSDRTLLARVDLEQKIRSLAFHPDGSQLAAGLSDGSFMVLKARDLSEVLHTKDRSEVIHELKYSPDGAYLAVGSNDNFVDIYATSQRYKKVGECKGSSSFITHLDWSDDSKYIQTNSGAAERLFYKIPAGKRVTNKEEIKAISWSTWTGVLGTEVNGIWEKYTDTNDINATDTSFPNNTLVSGDDFGLVKLFRFPCIKKGMGMFCIAMTRPAPSPDVLHQHIIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DX95</accession>
    <name>A0A7D9DX95_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A085946</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002570">
        <property type="protein sequence ID" value="CAB3994946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DX95"/>
    <dbReference type="OrthoDB" id="5978836at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="37"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3994946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="294" mass="33568" checksum="096862E49CD71A5A" modified="2020-12-02" version="1">MIISGVTDQEHLDNLEEVLSRLSEHGLRANIGPLQKLKNYSQIDKEASLALVWGVKKFHTYIFARHFTLRTDHKPLTAIFSPTKAIPATTAARVQRYALFLSGFDYEIEHRSSTQHCNADGLSRLPLATTEDEENQSVDPVEAFHVSQFSMLPVTWQQVRKATQRDSTLAQVYEHVMKGWHENKDPNLRAQPFYSRRNKLTMHQGCIMWGSRVVTPTKLRSEVLQVLHESHVCVVRMKALARSYVWSSGIDLEIERMQWLPAAPYHPATNGLAERFIQTTKQSLTSMKEDLGST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E0X2</accession>
    <name>A0A7D9E0X2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A006266</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003494">
        <property type="protein sequence ID" value="CAB3999019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E0X2"/>
    <dbReference type="OrthoDB" id="10561661at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="318"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="351"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3999019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="362" mass="39886" checksum="9D7B48D94040C759" modified="2020-12-02" version="1" fragment="single">MFIYIDVVLWFIVENCRESTSSSNNRIQEVLNKTEVRAFSTPAYNLSAACSSVLLLTSDGGATALTLAVGAGDDDEVTTSADIEKLVAATVAKTLPLALSSVLAAGGLKSLGIIIPTQSIEPAATDQVQTQPGPSREDRFYTTESKVELSDDLRELTTQGFSKSLSKKTWQGLLENYPPLEGTESILHVPTMEAGMREEIRKMHGYLKTKDVFAFDDALAEKQGAFLLTARPIIAALIALDHLSEEEEGPDPDLVKGMLEDALVLLGNANVRLNSWRQRRFSEYLTEVGKRTLKEEIPSDQHLFPDRFHDRIKDEHNHTATNKSMISKPHDKALSSARFIPSRQPFRGRSAATSRGNGSRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EFN1</accession>
    <name>A0A7D9EFN1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BTB POZ domain-containing 6 isoform X4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042839</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006145">
        <property type="protein sequence ID" value="CAB4008510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EFN1"/>
    <dbReference type="OrthoDB" id="45365at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022008">
        <property type="term" value="P:neurogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774:SF3">
        <property type="entry name" value="BTB (POZ) DOMAIN-CONTAINING 2B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45774">
        <property type="entry name" value="BTB/POZ DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00875">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="354"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="360"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4008510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="373" mass="42812" checksum="52EB33A54D0348F9" modified="2020-12-02" version="1">MAFAQNDDVIVHCESKPPQSDVKQSAHSVDWQSTKKSVSERNSHMFNNSDMSDICFTWEGSDKILYAHKYVLGTSSAVFHAMFYGDLAEKNSVVHLSDTDEKSLEEFLRFLYTDECNLTTDNIISVLYLSKKYIVPSLTEKCVNNLKCSIEAENVMSILEQATHFDESKLEMSCWKFIESNTKQAVVSTDFDNISQKTLASLLSRNDLDIVEVELFRAVLKWSDFQCSKKDMESDFQCSKKDMESDFQCSKKDIEATRESRRSVIGDAIYDLRFLAMNEKEFAQNVATSGLLTAEEMIPIYNKFNGIDSPDLKWKLSEKRSINNKIGSSDVHPLFQKYKCHEKGFYDYVCRKPEEESGRKSKNKTKKYTATRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EIR7</accession>
    <name>A0A7D9EIR7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A021199</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020007132">
        <property type="protein sequence ID" value="CAB4011401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="7694336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF5">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 6" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6570" evidence="5">
        <location>
            <begin position="100"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Helitron helicase-like" evidence="4">
        <location>
            <begin position="309"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="3">
        <location>
            <begin position="942"/>
            <end position="1137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="10"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="40"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF20209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4011401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1398" mass="159085" checksum="A2C133C9012A283B" modified="2020-12-02" version="1">MRLQKVCECKKRKQSGETESEKRIRLQEASETRQGKRSQKTNSKTQITYQKQNLSAELIRTYRKQKCANRVSQPQHEISQQDYLNMFDITQNGSIEEQSWAKENSMIPSSVPYELQNLTQIEEMLIARALPIMRIYIKPGGQRGYTGHCINLPQNVAELAISLPRYPKDLAVIIIKVKDLMTVETEDDIVSDDNCSPDVGPPTDNPSEDIVYNDPTEMSSFLPVSEQQQLEAVRNQLSENEPMPWPSVENEPINEYQVSYLATMAFPTLFPDGKGDPTNQGLLRDVPLHEQIKHLLKFGEIIDGEAHLTIDELREMAANNNANASKVSRYVGNIAGTNAYWTRVREELKAIITSVGAPTLFFTFSSADMHWPELHALFKADTDNELGNSTSEERRQNVINNPHVVDCFFTQRLESFVKYWLYDTLGAKWHWFRYEYQGSIHCHGTAKVNNDPGLCQLTQSALKGFLAQKFKDENDCSDTTELDQDIEAGQKAADTVCQYVDWLLSTVNPNAPEEDMWIRPETHPCQRRHSDIPEHEEQSDYVDLLNMVQRHTRCSTSYCPFDNCPKTKLEFEKIHTSGDNEHYRAKIVTKRNDSRLNNHQHLQLQGWRANCDIQVVIDHYACVEYLTKYAAKGEPRSPILKQAFNSIVQNVDSNTDPRRVIKKVAMKSLGERDYAAQETMHHLLSLKLHSSSFKVMPVSLNGSRRVRDTASIDEGESCTDYSLLDVYANREQYDSSQNIINMNFVQFATTYKVVNNELTKLPENVIPRIFPTYSPNPKGPNFGHYCKYQLLRYKPWRATQNNAWGDQDPTDEVLINCWHEFLQTAYGQSNVPDWFDKLQAVIQSQESEDEPSEEQETTREEWMILSDLNTPFDNSEQTPESTYDWHLDRANYSEQQIHEMPTWIKTNKEEYTIDEQYDVVDINHFSDMQKLAYNIVKSHFDDTSSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVAATTGKAAFNIRGVTVHSLLKLPIGARGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGYNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQVQFRDLLLRLRKGDSTVDDWKLPLTRQPSNVTNLCDFGDSTRLFYSNEQVANYNHGQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVIDIIYQNNHQPPDLPIVVIVEFVNYRGPVFNENQPLCIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVGISRVKSLASCVVEPMTYERLTSLKSSANLQYRLEEENRLDQLAQATSSAFRSTNFCTEFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELF9</accession>
    <name>A0A7D9ELF9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Arp2/3 complex 41 kDa subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">p41-ARC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A007186</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the WD repeat ARPC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007821">
        <property type="protein sequence ID" value="CAB4013271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELF9"/>
    <dbReference type="OrthoDB" id="406844at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005885">
        <property type="term" value="C:Arp2/3 protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034314">
        <property type="term" value="P:Arp2/3 complex-mediated actin nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017383">
        <property type="entry name" value="ARPC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10709">
        <property type="entry name" value="ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10709:SF2">
        <property type="entry name" value="ACTIN-RELATED PROTEIN 2_3 COMPLEX SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0853">WD repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="153"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006260"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00041244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00041789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4013271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="213" mass="23326" checksum="D435785EEF47EEBE" modified="2020-12-02" version="1">MVLVWKVIHISFFRVFSGHIKEVDGKPPKETQWGEKPSFGTCLAEFSNGRGGWVHDVSFSAAGDKLAWVGHDSSISVVAAANQAQIYTIKGEFLPLITCTWITSNSVVAAGHDYVPFLFSVDDAGQLTFNQKLDVAKKKESETMSAMAKFRTMDKEASTGDSGKGVNTTHQNSITQISIHTGDKRSTSKFASAGVDGRFVIWDVKVRLSNLYM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ERP9</accession>
    <name>A0A7D9ERP9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pentraxin (PTX) domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A005849</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008803">
        <property type="protein sequence ID" value="CAB4015677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ERP9"/>
    <dbReference type="OrthoDB" id="10411617at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051360">
        <property type="entry name" value="Neuronal_Pentraxin_Related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001759">
        <property type="entry name" value="PTX_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277:SF125">
        <property type="entry name" value="B6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19277">
        <property type="entry name" value="PENTRAXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00354">
        <property type="entry name" value="Pentaxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00159">
        <property type="entry name" value="PTX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pentraxin (PTX)" evidence="6">
        <location>
            <begin position="169"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4015677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="39988" checksum="B3CDB75E20CF3E8D" modified="2020-12-02" version="1">MGEENPSTNSLRKEEHIYLDVIHVASRPQSKRSLCPTAASDESLQQPTVENVATKKMSKKSGNVANCVLIAAVIFLSAVCCALCALYVIERRHSAMLESEKSRAKGVTASTPSTDCTRVSSVPADESLDCAAMESELERRKAVYNKKCSTETSEVETDRNQEQNIDTTPKDCMNKSLQFQSSSDRLTSQSTVTMKSATVCFWCKTSPGVLHYVKYKEPNHGKGFEIVEKKSSTQSTTGTNWHSFCWILSTGEEFKKLYKDGKLVSKREINRETGIRGGGTWELGLRLDTPGGQTAGADAKPKQYGEITSVNVWNRILRKKELMEIMASCLSKYQGNVKSWQEFKSAVQGNVKLVKSTCCKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ETK3</accession>
    <name>A0A7D9ETK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A012899</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the DONSON family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009110">
        <property type="protein sequence ID" value="CAB4016421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ETK3"/>
    <dbReference type="OrthoDB" id="534063at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033260">
        <property type="term" value="P:nuclear DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024861">
        <property type="entry name" value="Donson"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12972">
        <property type="entry name" value="DOWNSTREAM NEIGHBOR OF SON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12972:SF0">
        <property type="entry name" value="PROTEIN DOWNSTREAM NEIGHBOR OF SON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02064">
        <property type="entry name" value="DONSON"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4016421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="365" mass="40624" checksum="1AE048BB219CE189" modified="2020-12-02" version="1">MLGKQEARGLCKFVQHQDPNSDDDSTCFQQNIMYWIHPILPWLSLFPRLTSDMKLTSKVPNVAENQDIADALQASWCQSFRSLFNLLRCGNCDYFYLCSAQFTVLFRAAMIGGVASTSAYVTPTTKGIREGFDKEGISYTLPVLDLPTSVSNDNSDDEHVENDPLKDDVDDNTCWLESMGVAKETLPQLQQSKINQQRVKLRNIDHHSSSLAVVTGSHTQALFNYLLNNKTLISKTGSHAGIPPTLLAPVAFDGATLKSLNAKHGMVNLKQGKSLEKKYSLDITGPILPGNFSKLCQLFESTQQHQFSAVMKNLQATAPFNVLPPDMQAQDQSDDENFLKQPSNLGTTNLTFIKCDDELYTWETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HCE9</accession>
    <name>A0A7D9HCE9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A007488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000363">
        <property type="protein sequence ID" value="CAB3981201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HCE9"/>
    <dbReference type="OrthoDB" id="10038899at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3981201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="125" mass="14704" checksum="C21D24FF6F9B9F6A" modified="2020-12-02" version="1" fragment="single">IKAEEEFFDFLERFKCRAVVKKENITTIMIEIGQQELMQKPHLMVATWQPVLQTLKKYPPFQTLSALEVSYEDTKPTTKKILQLLDANPNSDAERDAFRFLQRYIRGLDNSQPLQFLRFTTSLSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HJZ4</accession>
    <name>A0A7D9HJZ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Xanthine dehydrogenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000716">
        <property type="protein sequence ID" value="CAB3984283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HJZ4"/>
    <dbReference type="OrthoDB" id="8300278at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.365.10">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_MoCoBD1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046867">
        <property type="entry name" value="AldOxase/xan_DH_MoCoBD2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444:SF3">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="MoCoBD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20256">
        <property type="entry name" value="MoCoBD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="Molybdenum cofactor-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="935" mass="106370" checksum="8ADF93BFC1885E48" modified="2020-12-02" version="1">MNRPVRLRMNFKTNMEMIGKRFPYLAKYKVGVTSEGLLKAVDLTYYTACGNATTDSLLAYFSVMMDNAYYCENWKYRGVPCKTNTAANAFVRSPGTLPATFVIETVMNHVAKALNKSPDKIREINFYKKGQTTFYHQPLPYCNISKIWQDLKQSSEAEKRRTAIQVFNKQNRWRKRGMSIVPLRKGVTYPAGLRFTAYVAIFRKDGTVCITHGGVEIGQGIDTKVCQVAAHILGYGLTVDQISIRPATSFLNPNGNATERSITSELCCEAVINCCNMLKERISLIAKDMPQATWGEIIDKCYGLGVDLSAKYMMLPKAGQPCNYNIYAATCTEVEIDVLTGETEILRTDILFDCGKSVNPEIDIGQVEGAFVMGLGYWLTEQAIYDPSSGLELTSGTWDYHPPFSKDIPIDFRVSLLKDAPNPLGILGSKAFDSVPHDKLIVKLHQFGITGRLLHWYSDYLMGRKQRVVVDGVSSSYLDVTSGVPQGSIVGPLLFLVYVNDLPDAAKYSKVPMFADDSKCYRVIETSHDTQLLQSDLQSLCNWSSTSELKFNLKKCIGIRFSRKRLIESPEYSLNQEPITLKPSQKNLGIIISNNLKWSPQITSIVSKANQMLGFLRRNCIHLTDTKCRRSLYLALVRAHLCYGSELWAPQSTSKDLLRIESVQRRASKYILQDYHSSYTDRLKFLNLLPISYWYEIKDIICFYKIKSGLYDLNPEDYIDYPTHHLTRFSSTNCYRPNLCRTAYFRSSFFNRIGVGIMREVVAHEDELKRCNNLKSIRGLASKIPEIQEEVIGSINSTKGLMSSMIQRLKLKDHHFETHDPASEAEIDSLWENVLKIDNSLTKETRTKKDIKTKEELKLFLESHCKVRQYMFSILKCGKSTCNVCKAPRLPEEIFSKMSTICQILCQQERNTNSLTNCMGRWKLQRNTCHLQGFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HQT1</accession>
    <name>A0A7D9HQT1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A028826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001334">
        <property type="protein sequence ID" value="CAB3988504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HQT1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="63" mass="7770" checksum="D166261BD6ABB262" modified="2020-12-02" version="1">MRRYEEKDTNEQLDHDEHEEDEDYNEVDIEHDNEEANDVNVEPPMARPERERQPPAWLRDYET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I1Q3</accession>
    <name>A0A7D9I1Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003267">
        <property type="protein sequence ID" value="CAB3998107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I1Q3"/>
    <dbReference type="OrthoDB" id="5990379at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="176" mass="19897" checksum="7F54395307B2F2D4" modified="2020-12-02" version="1">MDEAYSIAQDKIKEKGIKAKRSYDRWVRSSVLEPGDRMLVRNLTERGGPGKLRPFWGNDIYVVVNRKGPESPVYETKRENVQDEEASSDEDFSDVVMVSPPRETRSAQSRNPLPTDEAVPDNSDNLAVDDNLETLELQTPTETEETLDLSGEQSNLNPVHDIPTIPVVENPRPQRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IB11</accession>
    <name>A0A7D9IB11_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MCM10 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005139">
        <property type="protein sequence ID" value="CAB4005243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IB11"/>
    <dbReference type="OrthoDB" id="273123at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043596">
        <property type="term" value="C:nuclear replication fork"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003688">
        <property type="term" value="F:DNA replication origin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040184">
        <property type="entry name" value="Mcm10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015411">
        <property type="entry name" value="Rep_factor_Mcm10_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056791">
        <property type="entry name" value="Znf_Mcm10_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13454">
        <property type="entry name" value="PROTEIN MCM10 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13454:SF11">
        <property type="entry name" value="PROTEIN MCM10 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09332">
        <property type="entry name" value="Mcm10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24863">
        <property type="entry name" value="zf-CCCH_Mcm10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01280">
        <property type="entry name" value="Mcm10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="43111" checksum="A1CF9C5EBCD0EB20" modified="2020-12-02" version="1">MAANHSIAPSVLNNLYVSAFYALDSSCLLRQIYVAELESHSVKPSTVPLNLGEGGHFKKLKKPRGTSKDIKDFLTVAYTGAYALFLGTSIMVENSSSGIEKKHLLAVSTELVNILTRLYLQLVAWGFPIPKTNEKVDKEHLRKRLRHLIKVFLKDKQVRALVPPFIGRETLLLKWGLNIEYISCLSEFMSKLRIANTMTPVPVIPKKIHSTKVQFPILGRHFHWQMDSVWIPQKAELEQEQTYFTQREKKEEMETKMLSTKEMKVKVVQCLQCKYVAEKATVKCKEENHTLQSLQVMKKFFSCRDCSERTVAYGQRYPTRECRKCGAKNWEKCGMWKEKSGPKLGGETLMVRGLEYAKFLNSLQTPKTNGILPKYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9INZ1</accession>
    <name>A0A7D9INZ1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017925</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007136">
        <property type="protein sequence ID" value="CAB4011411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9INZ1"/>
    <dbReference type="OrthoDB" id="6135341at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="196" mass="22241" checksum="9821ABFDE9EEA097" modified="2020-12-02" version="1" fragment="single">MATSNRSSVALPESFSDGDIEFWLRKYELCSEANEWKEDIMLKRLPTLQCGKAFAVFERLEGEQKASFKNVREALVAAFRGDATGMHIAMMEFRKRERKPEEDIQVFAYNLESLLRRAMPKLGANERDILLKQQFIEGINPALKKELLQQPKISYGETVSAAQQLDLAIKFSSNDSVSHINQTTASSTASRYQPES</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IS43</accession>
    <name>A0A7D9IS43_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biogenesis of lysosome-related organelles complex 1 subunit 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A051158</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BLOC1S1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007526">
        <property type="protein sequence ID" value="CAB4012481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IS43"/>
    <dbReference type="OrthoDB" id="20018at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031083">
        <property type="term" value="C:BLOC-1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016197">
        <property type="term" value="P:endosomal transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009395">
        <property type="entry name" value="BLOC1S1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13073:SF0">
        <property type="entry name" value="BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13073">
        <property type="entry name" value="BLOC-1 COMPLEX SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06320">
        <property type="entry name" value="GCN5L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4012481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="122" mass="13915" checksum="FB6A1FA05A7E2F82" modified="2020-12-02" version="1">MLSRAQKEHHAQKQRIREQQELKRREAFESANAVVDKLVSTLNDGVEDVYQNQKKLEAESKQLQAHAAQFSKQTIQWLQLTEGFNRALKELGDVENWSQVIEAEMTTIAGALEYAYKGDVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IV70</accession>
    <name>A0A7D9IV70_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006049</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009287">
        <property type="protein sequence ID" value="CAB4016856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IV70"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="93" mass="10149" checksum="54101BBCDEF343CC" modified="2020-12-02" version="1">MTEGEGNLSQQCAVSLLQEATRMIREYDVSSAQVANPNVISQSKSHPSTSPGDTAVNTSNSERVLGNFRNLFGLYGHTGRRCRSKFLNTDVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J215</accession>
    <name>A0A7D9J215_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10 11">U6 snRNA-associated Sm-like protein LSm1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">LSM1</name>
        <name evidence="12" type="ORF">PACLA_8A040434</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.</text>
    </comment>
    <comment type="function">
        <text evidence="11">Probably involved with other LSm subunits in the general process of degradation of mRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Interacts with SLBP; interaction with SLBP occurs when histone mRNA is being rapidly degraded during the S phase. LSm subunits form a heteromer with a donut shape.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
            <location evidence="11">P-body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the snRNP Sm proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010297">
        <property type="protein sequence ID" value="CAB4019098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J215"/>
    <dbReference type="OrthoDB" id="422364at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990726">
        <property type="term" value="C:Lsm1-7-Pat1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000932">
        <property type="term" value="C:P-body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000290">
        <property type="term" value="P:deadenylation-dependent decapping of nuclear-transcribed mRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01728">
        <property type="entry name" value="LSm1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.100:FF:000021">
        <property type="entry name" value="U6 snRNA-associated Sm-like protein LSm1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034104">
        <property type="entry name" value="Lsm1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044642">
        <property type="entry name" value="PTHR15588"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047575">
        <property type="entry name" value="Sm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001163">
        <property type="entry name" value="Sm_dom_euk/arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15588">
        <property type="entry name" value="LSM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15588:SF8">
        <property type="entry name" value="U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01423">
        <property type="entry name" value="LSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00651">
        <property type="entry name" value="Sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="Sm-like ribonucleoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52002">
        <property type="entry name" value="SM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 11" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 11" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00056858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00062159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00067756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU365047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4019098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="139" mass="15527" checksum="5663553E43117AFB" modified="2020-12-02" version="1">MSFLPGTASLIKEINKELVVVLRDGRTLIGRLKSIDQYANLLLQNAIERIHVGQKYGDIHRGVFLIRGENVVLLGEFDRAADEKSNLVKVGVDEILDAQRSEQIAKDQHEKAVVKARLQLGMHVNLPDSYVGSKDYFGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J3C3</accession>
    <name>A0A7D9J3C3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">porphobilinogen synthase</fullName>
            <ecNumber evidence="3">4.2.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Porphobilinogen synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A076524</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>2 5-aminolevulinate = porphobilinogen + 2 H2O + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="4.2.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homooctamer; active form. Homohexamer; low activity form.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the ALAD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.24" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020011215">
        <property type="protein sequence ID" value="CAB4020989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J3C3"/>
    <dbReference type="OrthoDB" id="1530at2759"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004655">
        <property type="term" value="F:porphobilinogen synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001731">
        <property type="entry name" value="ALAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458">
        <property type="entry name" value="DELTA-AMINOLEVULINIC ACID DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458:SF0">
        <property type="entry name" value="DELTA-AMINOLEVULINIC ACID DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00490">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00144">
        <property type="entry name" value="DALDHYDRTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01004">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00032837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4020989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26024" checksum="5AACE3D0FBED4B6A" modified="2020-12-02" version="1">MEGKLHSGFHHKLLREWQCINTDINPANLIYPIFITDEENSLEPIKSLPGQYRIGTERLAEFLQPLINKGLRSVLLFGVPTKFEKDYGGSSATDPKSPVLVGIQKLRSLFPDLLILCDVCLCAYTDNGHCGILNEDGSLNSARSNHRLAEVAVAYAKAGCHVVAPSDMNDGRIGMIKQKLSENSLDTKVEEFSFCHSVTDEPDTTRVEKRGSQEMLIKQLQEIRLNEDLLLKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J7N4</accession>
    <name>A0A7D9J7N4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012617">
        <property type="protein sequence ID" value="CAB4023664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J7N4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="55" mass="6229" checksum="3163D1A1547D7F56" modified="2020-12-02" version="1">MEGEENASEPRQILEKDGFPLEIISKMEDAKFVYHGMEDKESKLNSAGIKTNELT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JEK4</accession>
    <name>A0A7D9JEK4_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Deoxyribonuclease TATDN1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A044918</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Deoxyribonuclease which catalyzes (in vitro) the decatenation of kinetoplast DNA, which are circular DNA catenated to each other, producing linear DNA molecules. Plays an important role in chromosomal segregation and cell cycle progression during eye development probably via its DNA decatenation activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. TatD-type hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015137">
        <property type="protein sequence ID" value="CAB4027932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JEK4"/>
    <dbReference type="OrthoDB" id="413993at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008310">
        <property type="term" value="F:single-stranded DNA 3'-5' DNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050891">
        <property type="entry name" value="TatD-type_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10060:SF15">
        <property type="entry name" value="DEOXYRIBONUCLEASE TATDN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10060">
        <property type="entry name" value="TATD FAMILY DEOXYRIBONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00039767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00045223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4027932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="141" mass="15811" checksum="71E23377B93F3AB5" modified="2020-12-02" version="1">MEVITRHRNHLPQVIIHCFTGNKEEIKAYVDMGFYIGITGFICKEPRSRQIREAIKDGTLPLDKIIIETDAPYMVPSLPLSQLDETSRMLLMRCREGRNEPCTLPVIAKTIAKCMGREAKEVARVTTANAARVFGLSAPPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHA3</accession>
    <name>A0A7D9JHA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A050359</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015855">
        <property type="protein sequence ID" value="CAB4028974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHA3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="168" mass="19042" checksum="7D93A571115F3DC2" modified="2020-12-02" version="1">MEANPDTPDPVQLEIDPANENGYIAEDIVQDTVQENPEVVHDVQDHTNDTQANVSEENMHGDRNPENIIPDPEVQTDGNRVVRRRQPPQRFTYYGPGNPAYISPVYGEKVEQYLPVHNDYTNQPFHLPHPPPPVFHWNSPIPPPYGIPPVIPQFWTPSYPPAPGTFPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JHA5</accession>
    <name>A0A7D9JHA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NAD-dependent deacetylase sirtuin-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A006453</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>N(6)-hexadecanoyl-L-lysyl-[protein] + NAD(+) + H2O = 2''-O-hexadecanoyl-ADP-D-ribose + nicotinamide + L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:70563"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:14175"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:138936"/>
            <dbReference type="ChEBI" id="CHEBI:189673"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="5">
            <dbReference type="Rhea" id="RHEA:70564"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>N(6)-tetradecanoyl-L-lysyl-[protein] + NAD(+) + H2O = 2''-O-tetradecanoyl-ADP-D-ribose + nicotinamide + L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:70567"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:15437"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:141129"/>
            <dbReference type="ChEBI" id="CHEBI:189674"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="6">
            <dbReference type="Rhea" id="RHEA:70568"/>
        </physiologicalReaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016461">
        <property type="protein sequence ID" value="CAB4029859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JHA5"/>
    <dbReference type="OrthoDB" id="420264at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017136">
        <property type="term" value="F:histone deacetylase activity, NAD-dependent"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1220">
        <property type="entry name" value="TPP-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050134">
        <property type="entry name" value="NAD-dep_sirtuin_deacylases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003000">
        <property type="entry name" value="Sirtuin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11085:SF6">
        <property type="entry name" value="NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11085">
        <property type="entry name" value="NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02146">
        <property type="entry name" value="SIR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00048378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00048905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB4029859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="279" mass="31186" checksum="92F0E3FF3240A655" modified="2020-12-02" version="1" fragment="single">MSSEENKNEGSAEDSTAGATGESDEKSSSDDLPSFLQGLLARLGISKPGDTEQEPEHEQVLEEVTFEGIAKYIQTEKCRRIVTMAGAGISTAAGIPDFRSPGSGLYDNLQQYNLPYPEAIFEIGFFHSNPEPFFKLSKELYPGNFKPTTSHYFIRLLHEKGLLLRHYTQNIDTLERLAGVPGEQLVEAHGTFYTAHCLKCRKMYTQDWIKNEILADNLPTCEKDNCDGVVKPDIVFFGESLPERFSSCVSKALKYREETTGHSVRPNFVRLERGAASEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMD9</accession>
    <name>A0A7D9JMD9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol poly from transposon opus</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A049042</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018086">
        <property type="protein sequence ID" value="CAB4032052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMD9"/>
    <dbReference type="OrthoDB" id="6141573at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="74"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4032052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="873" mass="96607" checksum="5A85DB646843C145" modified="2020-12-02" version="1">MGPVQPPQQKGRMHQYARGQLEQLQTKFDELEQTGVFQRPEDLNVVAEYLNPSFLVKKKSGGFRLVTAFSDVGRYSKPQPSLMPDVDSTLRKIACWRYIIVSDLSQSFYQIPLAKSSLKYCGVATPFKGVRIYTRCAMGMPGSETALEELMCRVLGDLLQNGCVAKIADDLYCGGNTPTELLSNWRKVLTALDKCDLRLATKKTIISPVSTTILGWIWSHGSIRASPHHIAALSSCTPPKTVRDLRAFIGPYKMLSRVIEGSASILAPSRVLPPTTNQAALWFGLSPLQPPSTTLKKHFHPTSPFAKTRKHQVTWLPCEVEALSIASAIKHFAPYIIQSKFQTCVLTDSKPCVQSFEKLCRGQFSASPRVTTFLSTASRYQISLRHLSGSANLPSDFASRNAPPCDDPRCQICSFISKAEDSVVRPISVHDVLSGAVTLPFTTRSAWLQTQQECPDLRRAHSHLKQGTRPSKKSTNIKDVKRYLNVASLSRDGLVVVRKEEPFSPSRECIIVPRPVIDGLLTALHVKLNHPSRHQLKQVVLRYFYALDLDKALDRCSQSCHICASLQKIPNCLIEQSTSDPPDAVGLSFAADVMKRNKQLILVVRETTTSFTTSCIIENERHDTLRASLIFLCLELRPISGPCAVIRVDPAPGFASLSNDEELRRHKITVEIGRVKNVNKNPVAEKCIAELGDELLRVFPEGGAVSPVTLAIATASLNTRIRDRGLLMGRGVMYASLLVPNSDPRHIASSYQSAFLSPTISLLHLQVLVSTNLTSTLQLLNPSLPVHLESRKSYPFHPTTMIVFYPHLTPLVSLVLITNIPRLTLIKLMSSLLVFLAPASHPPPPLHPKIHLPLDVPVANAILPFTCKTLLHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPT5</accession>
    <name>A0A7D9JPT5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A044770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019464">
        <property type="protein sequence ID" value="CAB4033687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPT5"/>
    <dbReference type="OrthoDB" id="5987243at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4033687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="334" mass="37111" checksum="0C02170108CD9970" modified="2020-12-02" version="1" fragment="single">AGVSSLDCYIQNVSMVKTTPSKKRYFNCTLQAKDDPVKAVCYSPDKHSELQTVAKTRSPIKLQNFKKTDSSKDIVITKFTKITPLSKADVGFSFEENMTVKSADAVAQVVSVSGVKKITLPQSNDTTKLSKQELVIRDTTASIRVVLWGKYVNAVQPKVTYLFKHLRVKGTKFEKYLNTPKTDPFILEECEEFQQPLVEVDDEIITSSTINATILGIQDATSINACVSCHRPVIQKGNSSPLGVCQSCHLTQPLSKCSVQWTLKVRVLTTALPSNKLLLTMSHDTVEDLMLFINPILNLATISEDELVISILEAEKVIQFTYDNFNKVTAIELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KBY4</accession>
    <name>A0A7D9KBY4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A046610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033980">
        <property type="protein sequence ID" value="CAB4044107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KBY4"/>
    <dbReference type="OrthoDB" id="5987622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF4">
        <property type="entry name" value="PEPTIDASE S1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="463" mass="52755" checksum="8738F64C99F3218A" modified="2020-12-02" version="1">MQETMKTVKHLKDFDTFSAIQDLVVRLPPYYSKKWLQSAKAVELVKGKYDFNDLVNFVQKAAKDATHPVFSHEVLLSKRKELLKDKKQEDKNSYHKRKFGSFNTSKYNESSGHSDKNINELMCPACRKPHKLDNCDIFLKKSVKERSELAKSKGLCFLCLCHGHMARNCKESIRCQTCKKPHATLLHFESKESKNGNKKENEESSKEKPKVANRVVVCHSNDCNEVTTSSLILPVWICHKDNPEKKIMTYAVLDDQSDTCFVTDSVCDQLEIEAPETVIELGTMHAVEDIRTQKISGLIVSSEDKSVDVPLPKDYSRENIPARRDQIPRVEMAINWSHLSPIANEIPEYRDDLGIGLLIGNNCVEAIKPRDVIPGKPQDPYAIRTVFGWGLIGVTNPVDHRECQSDGTRIHCHRVTTKDITTQSTGSTFVEQTQVKEVLNPHEVLKMFEQDFSEKKREKPMSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KJ74</accession>
    <name>A0A7D9KJ74_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082346</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020036031">
        <property type="protein sequence ID" value="CAB4044747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KJ74"/>
    <dbReference type="OrthoDB" id="6781885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4044747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18303" checksum="B38AB2FEE153FC9B" modified="2020-12-02" version="1" fragment="single">HHSKLESYVDDSKILLSFTVANVDCLKQQLEEDLYLIANSCSENELLINTGKTKYMLIGTRQNLQQLPVDMTINFLNETITPVSFAKDLGMTIDSYLTYDQHITNLVSSCMNSLCQINRVKKCFDKEALTLIVSALVMNKMFYCSTVWSNTSSNNIKKLQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L015</accession>
    <name>A0A7D9L015_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleotide-binding oligomerization domain-containing 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A079575</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012798">
        <property type="protein sequence ID" value="CAB4024010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="6424437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008042">
        <property type="entry name" value="Retrotrans_Pao"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05380">
        <property type="entry name" value="Peptidase_A17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="301"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="97"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="301"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="315"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1609"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4024010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1609" mass="185530" checksum="0D648192E7E11396" modified="2020-12-02" version="1" fragment="single">DRVEYSKMGEVYGPKHSDEPDEAENRLQELKYQKARAKTAFTKARNQLLNLLDEEECPNRKQIREIRRKLNEKQEQAFAAIDALACEYSSRTDRSALRKTTEEIEKLEMEFTDAQNRVQVYFDNTLDDSSSCISQSTHRITNRQQKLNRTRLATNYLSGEALKTVEKLGHSAIAYEAAKERLDRKYGGTRRQVALYLEELENFKAIRPGNSKDLEEFVDILDVAVINLQENGRHEELGNGSLYLKLQKKLTEPMICEYHRWIFEKKKAESVLSLRDWVIQESEFQTIAAETVKETVKEMESNQRENCERLPRNGRSISQATQTLPTTEGEYSTEVNERSLTTRVDSKISQRQEFLAMRTVPVILTNGNRRMTVNALLDDASTKTYINADVAAELGLHGNPQRTNVNVLNGQIETFLTMPVEFKLESLDGKVNTTMEAYTTEKVTGDMKVVNWNQYATKWSHLKDIEFPVSASKPFVDILIGLDYADLHYSVKDVRGQVNEPIARLTPLGWTCIGVPQDDQLCQLTNFNRTYFTRKDHKLDEVDAVLRKFWENENVVSIESGPWQKEDHLALQKVEQSLKYENGRYQVAIPWKRSEPTVSNNYGMAFRRLQNTEKRLKRNIELAGVYSDIIEHYIQKEYIRKVEETEKRPLEAWYLPHFPVLRPDKPTTKTRIVFDASAKHDGISLNDEIYQGPKLQRDLFNILIRFREHPVALICDIAEMYLRIEVAPQDRKYQRFLWRSMDEDKIPDEYEFNRVVFGINSSPFQAHEHDAQADEDSFTFNGLSYKNDLPPTKRNFLKKMASLFDPMGFLAPFIIQAKIILQEIWTRGLDWDDEIHDNDLVSKAETWFKQLDNLAKVKIPRCLRLGKEEQVLSFSLHTFVDASQEAYGAVVYAKVVYYSGKQSCRLIAAKTKVAPLKATSIPRLELMAAVLGARLTNSIIDVLRVKPDHVTYWSDSMNVLWWIRNPSRKFQVFIANRVAEIQTLSNPNQWRHIPSEENPADLVTRGVTLSKLVSMNYWWKGPSFLVQDESVWPINRIQIQESENEERKNYRNEERTRINKNKENPERTMTAICASPWRLQPSMFSSWQRLIRIRAWVNRFISNCKLTASCRTKLIDGKHIGECSECKRRNAKAATQIMAPLPNIRLKKSMRAFCYTAVDYAGPFFTTQGRGRRRQKRYLCLFTCLSCRAIHLEIAFSMDTNSFLNAFYRMANRRGLPQEIVSDNGTNFVGAEKELRQLVEQLDKNKIVASTASKGIKWHFNPPHAPHFGGVFETMIKSAKKAIYAILGSADITDEELLSAFTGAEALINSRPLTYQSANLKDNLPLTPNHFLHGQIGGQFAPESVDETDYNSRKRWRRVQELVRHFWHRWLKEWLPTLNRRKKWQQLQKNVKEGDVVLVISSDSPRGHWPLGRIVSVHPGKDGHIRVVKVRVGNTTLTRPITKICPLECELDQGRGECSEIKLKDNFDFEPAINSKSVVVFCKLFCFSVAITKLSYMAIKPTNTTSYTIRGLIGVLNKPNLLDNPPVPLNFETEGRCISFVGTTCNKIVGTRCFNAPEIFLNITYIISSRIGNASQRSRTASHDSYTLITVHIRESPRQIFINIVQYQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L1Z3</accession>
    <name>A0A7D9L1Z3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Serine/threonine-protein phosphatase</fullName>
            <ecNumber evidence="5">3.1.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A003385</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:47004"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PPP phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.16" evidence="5"/>
    <dbReference type="EMBL" id="CACRXK020013528">
        <property type="protein sequence ID" value="CAB4025297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L1Z3"/>
    <dbReference type="OrthoDB" id="1930084at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047129">
        <property type="entry name" value="PPA2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006186">
        <property type="entry name" value="Ser/Thr-sp_prot-phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45619">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00114">
        <property type="entry name" value="STPHPHTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00156">
        <property type="entry name" value="PP2Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00125">
        <property type="entry name" value="SER_THR_PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0464">Manganese</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4025297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="20486" checksum="5CF06D8D1376FE63" modified="2020-12-02" version="1" fragment="single">MVDSTCSDLDRQIEKLRRCELITENEVKQLCGKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFKVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLKKYGSVSVWRYCTEIFDYLSLSAIIDNRIFCVHGGLSPSITTLDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2I1</accession>
    <name>A0A7D9L2I1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A082360</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012848">
        <property type="protein sequence ID" value="CAB4024114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2I1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="180" mass="20784" checksum="189B06AD1BF627AF" modified="2020-12-02" version="1">MSARVQSNFMVRHNKIPFHVLTNDDEFESRSKDTRDAPRPKNVVDRLVGNLRKQRRYTPDNEFKHQRLTASASVEGEENFTGATQKMPQIPERSSSIENIGGLVVQNEYLDFKPPSEVYMGRRRSKSDSDLLVSCEIFARRRAAICEEMERSILMENGVTLRKCRKNLVLNQILENLSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LB78</accession>
    <name>A0A7D9LB78_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014544">
        <property type="protein sequence ID" value="CAB4027011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LB78"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="12204" checksum="773531E0FC01C148" modified="2020-12-02" version="1">MKEVMAQVICSVGVILQLRDDFTGHQEDELFNEAVHFTEELIIDVQPRDQTNYALLLHSTMKHIQHEENSTSDDQFNGNGNKVSMIEVISGNCCRTERTHRSVDSIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LEX6</accession>
    <name>A0A7D9LEX6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A058081</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020018590">
        <property type="protein sequence ID" value="CAB4032670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LEX6"/>
    <dbReference type="OrthoDB" id="416437at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF6">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24403" checksum="B8A5A22427FDED06" modified="2020-12-02" version="1">MIINSVAGTGKSYPIAAVREKDKCVITATTGKASFNISGVTIHSLLKLPVNYKYQKELSGQSLAMLQDRLASIEYILIDEYSMLGQKSFGWIDRRCRQATGLHEQIFGGKSIILIGDPGQLPPVCDKLLYHNKPSNSIAEQGYYAYQMFDKAIVLTVNKRVGGNSSDQQKFRDSLFRLRNGDSSEDDWKLLLTRQPSEVMQIIIIVMATSLCTCKGASVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LN38</accession>
    <name>A0A7D9LN38_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A068545</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Microtubule organizing center</location>
            <location evidence="1">Centrosome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ODF2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019301">
        <property type="protein sequence ID" value="CAB4033497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LN38"/>
    <dbReference type="OrthoDB" id="413404at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005813">
        <property type="term" value="C:centrosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902017">
        <property type="term" value="P:regulation of cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026099">
        <property type="entry name" value="Odf2-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23162:SF10">
        <property type="entry name" value="FI13205P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23162">
        <property type="entry name" value="OUTER DENSE FIBER OF SPERM TAILS 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4033497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="236" mass="27996" checksum="E9C473787732B247" modified="2020-12-02" version="1" fragment="single">MSKERHSVHKDFQVLVSSWYRPPNSDINIFNDYESFLQNCETIDKSQREKDALKKAARLQKDRAADIEKNVDSLKQRLDQELTEAKLNEDVWKDKEIKLKKEKTSYEARINKLKSRVEELEQIIEHTENTAKTNKEALNTKLQTRIQEINSLRAENERLKIEVEGFEERLKAEEERHFAKINCSNEEIDQFKGKIEDYEKALDENRSKTRCLQEEAQTLQDKVVQLENELSRNKIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LPW2</accession>
    <name>A0A7D9LPW2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Histamine H2 receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A065102</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023154">
        <property type="protein sequence ID" value="CAB4037487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LPW2"/>
    <dbReference type="OrthoDB" id="5976507at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246:SF27">
        <property type="entry name" value="ADENOSINE RECEPTOR, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24246">
        <property type="entry name" value="OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 10" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 10 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="58"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="140"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="163"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="227"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="306"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="317"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4037487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="40580" checksum="CE9108211A4F7195" modified="2020-12-02" version="1">MSSLNANQKRCLGVWPNEEISYTNASMSGFLSLITIPGNLLVLIVVFKNPNGKMRTPFNWFILNLALADLLVGMIVEPLSVVVHAREGLGYPLKYHVYLQPVYFTSCTASVFSLGMLTIDRYIAITSPMQYRATLSNKRAAISSLAIWIISTSLPFLQQEIGFLWYFFVFGNASVLVTFFVLLFAFVRVHLTLRAQIKELESIQGRSEENQARNNALRTEARITKTFMFMLLAFIFCYTPSLIMIYLMNLCTVCSCQAIHWFRDLSYVFIVLNSSVNPFLYAWRLPNFREAIKALFKRSTSQQLTAAANRSPLPAAQRNNGTTAMTNVSSESNGATPAQPKKDDVPGAKVNEVAICVEERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LUU2</accession>
    <name>A0A7D9LUU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011593</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022568">
        <property type="protein sequence ID" value="CAB4036939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LUU2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="67" mass="7998" checksum="BBF1D0066C1E323C" modified="2020-12-02" version="1" fragment="single">MKQKREHAWQRWKTEYVHSLMEHHRVIKGENACPEVGEMMLVVGEEKNRAEWKRGKVVELIKGKDNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LZR3</accession>
    <name>A0A7D9LZR3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028650">
        <property type="protein sequence ID" value="CAB4041641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LZR3"/>
    <dbReference type="OrthoDB" id="10068564at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="85" mass="9804" checksum="39DCCE5A442B8B9B" modified="2020-12-02" version="1">MKEYADTAAKAKPHSFQVGDTVLVRQKHVNKLSSPYNKHPYAIVKIKGSMITYGKKRNQLHNKKQLAVQENHYHHTSTRSCSRPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNB7</accession>
    <name>A0A6S7FNB7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000108">
        <property type="protein sequence ID" value="CAB3978383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNB7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="28604" checksum="F2B0694D15D0C3C7" modified="2020-12-02" version="1">MEELKEKYPNYEEMDIETLDSELPHLDKDLRESETTEETQDINEEINYIQELRRKILSKDLTREQLAEKFPDLSNLSYDNLMDRGDRLLNEIILPNLDEDSFKEKSEELRYVRMLSNDYQRQSNLNKLLNLRDKVKKRDLIKWNDRRRLQRLRLWVRENAGILSAVLISSSAVIIGLVASTRNIMWKVGDTTEKLDKRISELVNHQIELPPVFQKIADGVELAADNIWIIIVCAAAVLLYKFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FNF4</accession>
    <name>A0A6S7FNF4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A063069</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000124">
        <property type="protein sequence ID" value="CAB3978552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FNF4"/>
    <dbReference type="OrthoDB" id="5978522at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="56"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="136"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="56"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="106"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3978552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="217" mass="25573" checksum="5702D1262E6C8D88" modified="2020-12-02" version="1">MPRDQRAVRERFNKLMGEFRSKTRAELNASGISPDPPTEIEILLEEISDIMLNTVHTDKNKHEKDKRAKALSVRDAAMHTWGKSKERLGSSEDESDGSSEESNKTKQTKRRKQRKRKSSGDAFEYLRMRSEQSMLVQQQEMELRKQQAMLEQQKFDAREKKQQQKQDELISQQQKMNQLLENQQKQFNLQQQQQQMQMQMQMQMQAAMLAVLEKVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FWW0</accession>
    <name>A0A6S7FWW0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gastrula zinc finger</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000772">
        <property type="protein sequence ID" value="CAB3984674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FWW0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1800.10">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038563">
        <property type="entry name" value="Endonuclease_7_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511">
        <property type="entry name" value="PROTEIN CBG23764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31511:SF12">
        <property type="entry name" value="RHO TERMINATION FACTOR N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="His-Me finger endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="115"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="141"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="263"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="314"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1034" mass="118974" checksum="0C8565843D4B2D94" modified="2020-12-02" version="1" fragment="single">MATNFDLNDLTVEQLMAFSEIIDDSDSSDIDDKVEEIFADKFYRVAPKDKGKDPFEGQRQFIDEADRSMDPKKPRRLPLNYKGRRGIMPTWKYSERQKAKALLVEEAYQSLLSRGVEGLPPTMGGRWRTDDPQVNAEIKRLENERNPKRPRGRPPKPKSNTEVKVPRGRPVKSKVDAEVVIPKKRGRPPKPKSDAEAKVPKRRGRPPKSKVVETLKPKVKRQTVAERFISQNRIKLSVPANSVITPTGPGKFTIHVDLNKKPTRKAPEVPEGVVPWKPTPKPRERPIPKPRTVLPRERPIPKPRTIFPRERPVPKPRTRKPAPPPKLRKPVKLSKEVKEQPAVVTPEEHEIDPFGTYLEKPSHRKIETAANGAAVTYSITPHFMDPLDQMTASRQVVRGILVNELKRMGGLKYTETIKVRMSKEIGNNKTKKDSIYFKSKTGTATNFEDIESTAAQNQLTILARIETFQNLGSNWIILNIESHYVNIAMYKPLKGSSYMKLPADIINPKCGLINMKNNDNKCFMWSHVRHVRPKARRATTITRQDMEFAENLDYEGIDFPVKISDIDKIERKNSMSISVFGYKGKKQFYPIRNSKTKYDEHMELLLLGDGNGNNHYVLIKDINRMLYSVSGYEHKKHFCLHCLHSCKSEELLEKHRETCIEVNGTQATKLPKEGTKIKFKNHRNSMPAPFVIYADFESILVPEEKKVDSENSEDKSSTDLYQTHKACSFGLKTVCHYDDKYSGEYISYVGEDATQVFLKTVLKESIKCREMVNKIFKKKMVITPEQEAEFWMTRNCSICGNDLGDDRVRDHDHVTGMFRGAAHNMCNLKYRITWKVPVVFHNLRGYDSHLIMQEIGKFKMNINVVPNNMEKYISFSLGKNLVFIDSIQFMASSLEALVSNLSPEDFKIVGKRWKGEDFNLVTQKGVFPYEFLDNISKLNVEGLPSKDKFYSTLYESEVKEEDYQRAQKVWDHFGMKTMRDYHDLYLETDVLLLADVFENFRRTCLENYKLDPAHYISAPSLSWDAFLKQSGDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FZC0</accession>
    <name>A0A6S7FZC0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DDE Tnp4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A064342</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000364">
        <property type="protein sequence ID" value="CAB3981226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FZC0"/>
    <dbReference type="OrthoDB" id="5966657at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080:SF133">
        <property type="entry name" value="SI:CH211-262I1.5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23080">
        <property type="entry name" value="THAP DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE Tnp4" evidence="3">
        <location>
            <begin position="6"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3981226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="181" mass="20310" checksum="FE19F4A95868978A" modified="2020-12-02" version="1">MTRVILDCTEIEVQRASNCDLQSMNFSSYKNCATVKGLVGITPDGIGCFFSDLMPGSTSDNEITLASGVLNKVESGRGVMTDRGFTIQDNYAEKGLHHFAPPMLEGNQMSVADCTKTFDIAHFRIHVERFIGRMRNWHILSQIWPMNQYDLILNPTWKVIGFLVNMSPPVGPKINDHEVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G1X9</accession>
    <name>A0A6S7G1X9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A022007</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000936">
        <property type="protein sequence ID" value="CAB3985908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G1X9"/>
    <dbReference type="OrthoDB" id="5982456at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3985908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="29909" checksum="C4912E3277DD4D1D" modified="2020-12-02" version="1">MADNEALALCEEILNLSSPPKPTRIIQIENTTVQRTDIVQNTSSLPVLAGEVAVAQKNQVLRLEKRVEFLGKLQVEHREVLRLRREAEKHVQAVLRKSNLLQDDIETCQKNCESLRKELNVLVANTEALKGDICVEENELAKEKRGYEVYQEKMTKHKELSEIAESSDAVNVNITNNMKYYEMLNKEKKSLVESNDIPKLLSGEIKEICMAELFTLDESISELKQNLKIKFQSTDEKEKQVRFKKDVELLQVMQNSIIGII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G687</accession>
    <name>A0A6S7G687_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A085525</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000358">
        <property type="protein sequence ID" value="CAB3981161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G687"/>
    <dbReference type="OrthoDB" id="5987862at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031037">
        <property type="term" value="P:myosin II filament disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903013">
        <property type="term" value="P:response to differentiation-inducing factor 1"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04515">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992:SF2">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3981161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="134" mass="15329" checksum="70D8639ECF0A7AE3" modified="2020-12-02" version="1">MTLASEAPVEYGHVLSYTKVYFGRLYGDLEGEFQKYVNNTGEVYGESEVTHNAEAFCHYTYERSEHQLMVVDIQGVDHNLFDPEVASSTLFYANDKTIFFCCGNLSTDAIDMFNLIKAVHVCNKFCHMLKLKEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6C3</accession>
    <name>A0A6S7G6C3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Vesicle transport protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A010990</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Membrane</location>
            <topology evidence="2 9">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the SFT2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000677">
        <property type="protein sequence ID" value="CAB3983936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6C3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007305">
        <property type="entry name" value="Vesicle_transpt_Got1/SFT2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011691">
        <property type="entry name" value="Vesicle_transpt_SFT2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23137:SF6">
        <property type="entry name" value="VESICLE TRANSPORT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23137">
        <property type="entry name" value="VESICLE TRANSPORT PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04178">
        <property type="entry name" value="Got1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="67"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3983936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="163" mass="18048" checksum="C8AD89206A905DF5" modified="2020-12-02" version="1">MAPSTVQKLKAAVTGQPNDESSLITEISDATTLSWSTRIKGFIICFVVGVGLTLLGIVMLFQNNYKLFAVFYTFGNLTALASSFFLTGPLKQLKNMFKEKRFIATIVMLVCLVLTLCAALWWKNNGLAILFAILQYFAMAWYCLSYIPFARNAVKGCINSCLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDH9</accession>
    <name>A0A6S7GDH9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A024358</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001855">
        <property type="protein sequence ID" value="CAB3991464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDH9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="29"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="109"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="161"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="29"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="58"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="109"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="127"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="146"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3991464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="26234" checksum="963CA12DF525D159" modified="2020-12-02" version="1" fragment="single">MRRSRNGTYEPPDYDKAYFEYYSNSVGTSDRNFNSESSISKNVSRYNKGSHRSAIDPMSTQSNIGNSSIIQPPSQQTRWSSETMTSNEKEHYKRALNEIYDAVKLRTQRLDTESGSDSDTHSEEKQSSQNASSSPKTGSEGEPLKARRNQPRKKRLSETELQEIYQELRGISQKLKDETRELQTWEKELQEREALLNDHENIAVTQQENVSETLEDEVQRRCTIIDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GF17</accession>
    <name>A0A6S7GF17_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A038588</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001683">
        <property type="protein sequence ID" value="CAB3990578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GF17"/>
    <dbReference type="OrthoDB" id="5988938at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="325" mass="37433" checksum="A8126059D84E549F" modified="2020-12-02" version="1">MLKPVRVLAGLGNPPNKWTNQQTESLNTIIKEEAGNQVTDQATIHEILEERIFSQQENEYIKAVFNMGNTKVFKAPTSCSEKHPSMIPRKKLSVSIQDSGVVGVPSTMLTQIWNSAEVILSTQSIIDVGKVYENLGNLPKYLKSYNKKSDKASKIIFGNIPIRAGEKPREKKKRKGSNNVELHPIVEEVRRNDIDLDFPKPLNFTEIYHNKNNFDVVFTKDYRNISKCESCKIEFPTGGIVCIPQDIAILHMERYYYPKKDAAANIRMEATWKKEVARYYCMKKNCILQRHPYFWKGMLKIENDVRERLKEGHTKLLNDAFHLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GF47</accession>
    <name>A0A6S7GF47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019002</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001004">
        <property type="protein sequence ID" value="CAB3986347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GF47"/>
    <dbReference type="OrthoDB" id="5979290at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3986347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="584" mass="67331" checksum="9A397F0AFBB7ED62" modified="2020-12-02" version="1">MQSILKEDLGLLKAGYEESKKAYEKKLGASNVKENTLFALAWDVVEYETLSKQNLSFQSDILPIVLRLQNSEQLDGNIAKFFTEMRKGLLPYCKGVFGKQREAASHVFSFMISEEQRNIKPYAIPVRFLTYSSITDKTVRDLKRQLVDEMRKLDMLSVGFVTDGEFNSLRTMGAERPLSIIELIAIARKHAKSDRVQDIKKYLTPVVKEGVVLPELGHEAVPLEDVQWLHEFMKNGGKSETLGDVLKSLMATYHYKKLIQTYESAGVDFRNHIYNPECDQNSGEFFHEREDHNHLLKRITNCLRSGEIPNIRLQYFRDALNDPSTGLTKSALTGVNKQSVPDCERMFSVGMIDFMQKNGHANEMAFLTLVHNWHKASDGRGIDEDTRHLYNKQMLNWVLDDWMPWHRDNYDFSTIDVNRRIKGIQGLTREIIIGLTTNIESQELRRCEYQSRDLVPEHPRASSTDDVEGLVGMLHDMFGPVFDHKTLLDQMQKVFNEFAKRMDPQLPYYYWTSYKERYHSDPLPHFNEPSTDGKERLDGVKISRRADPGVFVSNRAQLPQKNSLTVRATFHRAPESLPELAVDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GGB7</accession>
    <name>A0A6S7GGB7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001772">
        <property type="protein sequence ID" value="CAB3991008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GGB7"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="22200" checksum="C1BC51EE5BA06343" modified="2020-12-02" version="1">MIVRRNIPTLLPDPFPFIKRRTWLKILGITLQDLPSKWDLHFDEMLKKASARMYIMRVCKYYGFPIKQLDMLFNTLIMPIITYGIELWEGAYFNKYISQIDKFINRAHRNGYISEKLNIKEISIKRDKKLWDKVIHNKDNALQELLPDKLNRHLRPRGHEFELPLVRTERFKSSFVNRCLFNFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLL1</accession>
    <name>A0A6S7GLL1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Counting factor associated D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A008567</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002043">
        <property type="protein sequence ID" value="CAB3992403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLL1"/>
    <dbReference type="OrthoDB" id="65740at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02248">
        <property type="entry name" value="Peptidase_C1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.70.10:FF:000332">
        <property type="entry name" value="Cathepsin L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025661">
        <property type="entry name" value="Pept_asp_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000169">
        <property type="entry name" value="Pept_cys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025660">
        <property type="entry name" value="Pept_his_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013128">
        <property type="entry name" value="Peptidase_C1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000668">
        <property type="entry name" value="Peptidase_C1A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039417">
        <property type="entry name" value="Peptidase_C1A_papain-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013201">
        <property type="entry name" value="Prot_inhib_I29"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12411">
        <property type="entry name" value="CYSTEINE PROTEASE FAMILY C1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08246">
        <property type="entry name" value="Inhibitor_I29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00112">
        <property type="entry name" value="Peptidase_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00705">
        <property type="entry name" value="PAPAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00848">
        <property type="entry name" value="Inhibitor_I29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00645">
        <property type="entry name" value="Pept_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00640">
        <property type="entry name" value="THIOL_PROTEASE_ASN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00139">
        <property type="entry name" value="THIOL_PROTEASE_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00639">
        <property type="entry name" value="THIOL_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0788">Thiol protease</keyword>
    <keyword evidence="5" id="KW-0865">Zymogen</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3992403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="660" mass="76890" checksum="58C798A1BE77AAB9" modified="2020-12-02" version="1">MAYNICNVYNYMNEDVSVTVYISLSYTKIEGFFKSASSYLPLSLASQREAKLESKFNKVPAKLSDLQFYSSYHVKGFLRLMTSDLHEPIEVWYSKEHNQSRIDYYGGDVKTYQDGQLSLFLKIIPKYDSITKTHTIGCWKKRKRRGGKIGPQSVLPTSWSWPFKGKLDDFKHIGDEKIDGKLCMKWRFEHNMMGRNNVYTFWLEERHPPVPVRYEMVGYDTLLTSYYDKYVIDYTSFEKWEYEKAIFDIPEIPGDSGCWNASAELQGEEGEYFMNPIAEFIAPHDGDDPVEKEFHRYKEVHGKKYDDKEHLERRHIFRHNARFINSINRKNLTFKLKPNSFTDMTEGEYNLHKGSLPDYPVELRKKKRRPMLYITEKYKPRRKSPTIPDQLDWREYGAVSKPRGQGTCGGCWAFAAIGAIESANFIKTGKLVQLSEQQMVDCTWKVKGVWKGNGNHGCHGGMAWKALFWAKTNTIATSESYGPYRGQEGYCKTENITAGAKIYGFRRVKKHSAKSLRRAIAYHGPAAVAINSHLMTLKFYSHGVLDDEQCANSTDHAVLVVGYGKENGVNYWLVKNSWSTLWGDGGYMKIKEDKCGILKKPVIVLNKHIKSYPWHKKSKWKKGFNKRHKKSKRKRKYKKKSKKGCHKKHKRKHVRKHRHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNC4</accession>
    <name>A0A6S7GNC4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SH3KBP1-binding 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A040664</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002200">
        <property type="protein sequence ID" value="CAB3993163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNC4"/>
    <dbReference type="OrthoDB" id="2414723at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18316">
        <property type="entry name" value="BTB_POZ_KCTD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043136">
        <property type="entry name" value="B30.2/SPRY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499:SF136">
        <property type="entry name" value="GH08630P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="347" mass="39394" checksum="9D55550B446039D1" modified="2020-12-02" version="1">MSSEDILAKFDELVKRFKEEFNEIIQGERAKMKAEVEQYNAEKQRMKPFEVSDDDIILLNVGGQKFTSTRSTLCQVEGSLLAIMFSGRWERGLKRDEDGAVFFDFNPQYFGYILDYLRMKKIASSENSAEFPKVPRDEVKNFNTLVEYLGLSDEIVVPVEETVEIVPTEIVPSEKFNLHSPEITLQEDGKVAVLTSKAAFRYAIGENIYQQGIVRLKLKLESFQNNDWMFVGIAKGDGLQEGYYFSCGWPGSYGWALGTTGQVWKEGNITRDNSLKNLTKAGDTVELVLDCDAAKLSLNLPTGEQFHINLPKSQGQTWRLNLYQSFLIPIVKIDLVNWAQIFGETIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNG0</accession>
    <name>A0A6S7GNG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A005631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001277">
        <property type="protein sequence ID" value="CAB3988077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNG0"/>
    <dbReference type="OrthoDB" id="8197232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3988077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="243" mass="27616" checksum="7DE90E462EF5A4A5" modified="2020-12-02" version="1" fragment="single">ASGLDQISAKVLKIAAPSIAPSLTLIFNQSIRTGIFPSDWKVARVTPIYKSGEKFCMSNYRPISVISIVARIMEKLIHNQIYEYLIKENLLANSQHDFRPNHSTLTVLLDITNRWYQNMDIGQLNGVIFLDLKKEFDTVNYDILLSKLAIYGIRGSALRWLNSYLTGRIQYCQVNAHLSDPLYVTTGIPQGSALGPLLFLIYINDLPNCLEHTKVNKLCLPTIPKLKRQVMMLIQLLRNLIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQ20</accession>
    <name>A0A6S7GQ20_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enzymatic poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A041898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002402">
        <property type="protein sequence ID" value="CAB3994148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQ20"/>
    <dbReference type="OrthoDB" id="7701645at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09275">
        <property type="entry name" value="RNase_HI_RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47823">
        <property type="entry name" value="lambda integrase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3994148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1202" mass="135191" checksum="DEBF323F1566590D" modified="2020-12-02" version="1">MSKASVSSVSICAEQSSRPIDPPVSDLDLDSTIDENFDQSAVNRAILMSLNRLNENFTSFTEQYQEDDVEIDSQPTDDHVENPENVDIQADIDSLIQSGGQVDRVSADITNANANEAEILQYEQQLDLNVDVKGPAISQKIGDLVNKLRLQRVSQDQAKAIAKRHNTPENVQLCLPKCEPSIWNEIPGKARVTDIKFQSTQAALLGSINCQLEATNSLLSANVSKDVLNSCLDGLTLAMTANYELNQRRRDAIRPQFKAEFAKGLCSTTSPADEFLFGGDTAKRVKEMAEFNKHKVCKGTTRIFRMCPSTSESKQPKAHSQLITSDPEILDNIEHCHIEFIADPSKYSIPGHQYFNVHQHDIISKEVDKLLQLGVISKSMHAAGECISPIFVVPKPDGSYRLIFNFKRCNQAVLYRHFKMDTLAAILSLVTPGAYMASIDLKHAYYTIPIADEQRKFLKFVWNEQLYEFCVLPMGLTSSPRIFTKVMKPVLATLRQKGHINSGFIDDFYFQGQEFSDCAVNVSDSVRLFISLGLHVHPDKCALIPSQELLILGFLINSLLMIVKLPLEKKVKLRDLCLQALRGNKLTIQFVASVIGTLISALPGVEFGRLHYRNLERDKINALARNNGNYRAFMHLSEAAKQELQWWTTHVMHASRRLRHPVISYIFQTDASDLGWGVTCTTNPQLQSQGLWTSEQRTLHINVRELYVVFICLTIFGMEKSDVHIKFELDNMTAVSYINHMGGCRSSACDTVARKIWAWCISHNIWVTANYIPGPSNVVADSLSRKHLSDHEWQLNTDIFHKLSKKFPKFSIDLFASLLNRQSHSEMSGENLSRPSRRGFTGPCMAHTNMVPSSSTDAHSAAKAVVVDPSSGLIETPIRQGSQHARKTEVDGMSLVRQHYQNQGFSDHITGVLLDSWRTSTQKQYASYLKKWNLFCRERKILAHSPTLNQVLEFLYTQLHLSYSSINSARSALSCFLSIGNFPVGKHPIVCRFLKGAFERKPPANKHHAIWDVQTVLAYLKTFTPNSGLSLKELSHKLTMLLALVTIQRKQTLIHLNINNGCMIQSDVQFVFVLDKHIKQSRPNYSVPPVIVPRYNLDSDVCPYLCLEAYLEKTKHLRQSVNLLVATIKPHRAIGSQTLARWIKIVLAGAGIDITLFKPHSTRHAAATAAYAADLPVDEILQRAGWSNATTFRRFYYKGVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWW8</accession>
    <name>A0A6S7GWW8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Venom 302-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A011994</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001422">
        <property type="protein sequence ID" value="CAB3989040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GWW8"/>
    <dbReference type="OrthoDB" id="6368040at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005520">
        <property type="term" value="F:insulin-like growth factor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001558">
        <property type="term" value="P:regulation of cell growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009966">
        <property type="term" value="P:regulation of signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000867">
        <property type="entry name" value="IGFBP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011390">
        <property type="entry name" value="IGFBP_rP_mac25"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14186:SF20">
        <property type="entry name" value="CYSTEINE-RICH MOTOR NEURON 1 PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14186">
        <property type="entry name" value="INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00219">
        <property type="entry name" value="IGFBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00121">
        <property type="entry name" value="IB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51323">
        <property type="entry name" value="IGFBP_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="IGFBP N-terminal" evidence="5">
        <location>
            <begin position="18"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3989040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="10369" checksum="BD434FC914EEA3A1" modified="2020-12-02" version="1" fragment="single">MKTTFLIALGISVIVATTQAVCPKCDSGKIKCTPIHKLDCKGGLAPDPCMCCAVCAKIKGESCGGPFNITGKCDCGLKCLKSPKDIENMGEFNANGLCVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBK4</accession>
    <name>A0A6S7HBK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Threonine synthase-like 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003844">
        <property type="protein sequence ID" value="CAB4000463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBK4"/>
    <dbReference type="OrthoDB" id="5203861at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43515">
        <property type="entry name" value="THREONINE SYNTHASE-LIKE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43515:SF1">
        <property type="entry name" value="THREONINE SYNTHASE-LIKE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4000463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24695" checksum="D1C8E3F1063CFA1F" modified="2020-12-02" version="1">MGIPFHTLICASNTNNVLTDFFTTGKYDLRGRHLEMSISPSIDILKSSNLERFLYHVTKDGALVSKLFQQLATEKYFEISEDLRQKMATYIEPGWASEAECKTTIKTCFDQNHYLLDPHTAVGLNVALKRPPSARKLLLSSTAHYSKFGKDVLLALGLKPISDSPCELFKQLEGLKIQPVMNESLKNAMGKHEIQNGVCSNDLNAVKEKIEIFLKELKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HJG6</accession>
    <name>A0A6S7HJG6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025830</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005011">
        <property type="protein sequence ID" value="CAB4004826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HJG6"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4004826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="285" mass="32035" checksum="4DDA570EFAEC548A" modified="2020-12-02" version="1">MFLTGNFGTIFICTSELYPTMMRNVGVGAGIFWARIGGIAAPQILLLDLKSLVERNNQELSKLSTWFKTNKLSLNVKKTKCIIFCARNKPLNQYRNNLNIIIDGQEIEQVASINFLGVQIDEHLDWKVHIDKVSMKMAKSIGLINKIKSYVSVSTRRTLYCSLVLPYIQYCNIVWANCYHTYLDRILKLQKRAVRIIAGAGFRDHTKPLFSLFKLLNGNYTADAVPFIIFGGLVLLSGSLALLLPETLNVKLPETLEEVGKFEMPQEGQGKMSIVIGNENIELGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HLG9</accession>
    <name>A0A6S7HLG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064262</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005415">
        <property type="protein sequence ID" value="CAB4006124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HLG9"/>
    <dbReference type="OrthoDB" id="5978317at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="320" mass="37451" checksum="9AA5290F71E327BB" modified="2020-12-02" version="1" fragment="single">MPDWVVAKYFDPEAERHRLAIHDYQQTEIRQMRCMDNTKLVDSLKLPLKSYNDLLIAFSHMLSNGLEDYLTHFAAPFPGDWPMQFFMRQLVYNTASVSLPMVCKNIVPMIGPLHVSLNSREWVLLNFHPIFADLYSFLFGAKAKLAKKPKPWRISLLLEVIYGGWTLVRDSIMSVFSNCKDIEFLTLINLIDNYVPLVLSIYSIVFKCSNYDLYCKSLFRCWIMLMVFCRKHYDKALLVALSTLKFWDDNTHPMHQIVQQFLAAFDEYPVENFHSVVLRARTNETDTAEQIREKAKKIDACKKELHEFQSSFVPPQEIQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HUP3</accession>
    <name>A0A6S7HUP3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">T-complex 1 subunit eta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A028294</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the TCP-1 chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006608">
        <property type="protein sequence ID" value="CAB4009895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HUP3"/>
    <dbReference type="OrthoDB" id="1935484at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005832">
        <property type="term" value="C:chaperonin-containing T-complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.560.10:FF:000017">
        <property type="entry name" value="T-complex protein 1 subunit eta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.260.10:FF:000022">
        <property type="entry name" value="T-complex protein 1 subunit eta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="entry name" value="GroEL-like equatorial domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="entry name" value="TCP-1-like chaperonin intermediate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017998">
        <property type="entry name" value="Chaperone_TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11353">
        <property type="entry name" value="CHAPERONIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00304">
        <property type="entry name" value="TCOMPLEXTCP1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="GroEL apical domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="GroEL equatorial domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 8" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00049360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4009895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="25435" checksum="3E3ED9AAB675B953" modified="2020-12-02" version="1">MFCAGRVAEEDLKRTMKACGGSIQTSANSLTPDVLGTCELFEEVQVGGERYNMFKGCPQARTCTIIMRGGAEQFMDETERSLHDAIMIVRRAIKNDAVVAGGGAIELELSKFLREYSRGIAGKEQLLIAAMAKALEVIPRQLCDNAGFDATNILNKLRQKHAQGGMWYGVDVTHEDIADNYEACVWEPAIVRINALTAATEAACLILSIDETVKNPKANREDPSALPGQGKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HW81</accession>
    <name>A0A6S7HW81_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Eva-1 homolog C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006802">
        <property type="protein sequence ID" value="CAB4010485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HW81"/>
    <dbReference type="OrthoDB" id="1100386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000922">
        <property type="entry name" value="Lectin_gal-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043159">
        <property type="entry name" value="Lectin_gal-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46780">
        <property type="entry name" value="PROTEIN EVA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02140">
        <property type="entry name" value="SUEL_Lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50228">
        <property type="entry name" value="SUEL_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11038" checksum="732EA2660B4F2A9B" modified="2020-12-02" version="1" fragment="single">LVTCHGNMIKNANCPKDQYMVIRNASYRGLSAIKTCGLSDDYSCEVDVTCLVKKQCDGQRECKITVDDNLFSGDLCPALTKYLYFEYQCIDTPTPYLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I585</accession>
    <name>A0A6S7I585_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A051012</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007280">
        <property type="protein sequence ID" value="CAB4011833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I585"/>
    <dbReference type="OrthoDB" id="10072101at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="381"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="533"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="609"/>
            <end position="686"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="286"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="396"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="636"/>
            <end position="659"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4011833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="686" mass="79232" checksum="E9E80A78CFB3E20A" modified="2020-12-02" version="1">MTYFHTELILFLFLSYRKDRARHEQLARERLAALKAKRAEKEAAIIVSNEDEQRYAIEAKLQNEQDKEKDILSQEALELQQGGVVAVHEAILKEVEKKHSIEIKMLSELLDVSESDADAVAAASYLNNKQRVEKMADLYRDFKEWKTATVRASKNAGSEFNSKEEKDENVLRAADRQMKLMRILKDGIVLKVLNVKEELTGKNIPEPNLKDELGVMLVANLQEKQNTESRAVENILAEKEVAVLNLIKDEQRRIRQECIVDNLAAVILQKDQEETLEGNSDVSKAENENEKQFAEMEAELEVERQRRFLTGASEAEINAALSELRRQQEAKKQALNATLEHQRNLAKAKLEARRRRRDDKQYEEDIATSLLMMAEQESSLVREKTMIQRSKQGESLQERLARRREERAKRKAQEELERNTEESKDEIEQDENDRPKAASAGRVVERTEKLKGRKSSLPEGFSMKREKTVVDVEVSEDKKKEIVGSLLREHTQFGVGIERERKRQEDILMERRLRKKSHVVQAAATIVGLGERQKTMVEQKRKEERERQLTLVRDRISRVRHERTMTMKEPKSDSKGFDHMLTQEEAEGLNAEEKMKLIAAKMEQKFKVEERRVSTTLQSPPILPSYSGVDDEDMASIDRRKSIRLDEKGKEKKLKERLAARKKAKRGERLSEDVEQTGDDPSSSTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IBX5</accession>
    <name>A0A6S7IBX5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019844</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007945">
        <property type="protein sequence ID" value="CAB4013610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IBX5"/>
    <dbReference type="OrthoDB" id="10020375at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018:SF3">
        <property type="entry name" value="MYCBP-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="622" mass="69930" checksum="382E642E3FA8BC64" modified="2020-12-02" version="1">MGPVKHRGDVSAQDTLTAVVSNGEPNSSTVDECPVGNVSIDSVTNTAEMVAITPEDDVHLTTISPIADASGIPSMKSISLDYFLWLVNRLSKRTVDENSFVPGFTAIRSSLTNLNFHDTTKILTPILPYPATTYDAIFTTMINFQDALKQKGDTYGGLWADEGVYRIAKEIQLLKPDKFSNIFLGLGGFHMEKVVFACLGAYLEPSGIFSVLVETECYGTDTINGVISGSHYSRARTAHSMINEIIMSLMLEAFQAEYPEKSVLFEDLLIDCQSEEMTTDYSNTIKEQSKDIEEDFQNFMKEKSRQSQSFAYWFTYVFELFPIARDLTNSMRSGDWILYLSAVERATSLFFFFGRTNYSRWTPLFLQDCCQLKDKFPLLYSSYMDGGFVVNTPRTGSGVRFDQALEQSYNRPAKVSGGIIGFTRKKDAVALWGIIKHKKDEYVHLLKMQDNVDGELSVHHNFNQSSAKKIKELMQEIQNYLLKVCSPFLDLETFKNVLTGEIVSKVDVSKLLCCTKMGGGAFAEFVENRLRDKKVSIHSTISKIKYSSPHVSTHSASKTDIKDKTIKALMFIEYGRHCGFPAEELLVHEITRSAFFLVDKDGYVKKSVKSQLATEILSYAQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IGD6</accession>
    <name>A0A6S7IGD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015123</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009243">
        <property type="protein sequence ID" value="CAB4016756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IGD6"/>
    <dbReference type="OrthoDB" id="5992265at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="177"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="191"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="229" mass="25845" checksum="AE976FC0A4922035" modified="2020-12-02" version="1">MNENIFQFRVQGQKRPNIIEIELVLITKSKYSECSSMLLLIRWESAYDCRSENCLDYDNKEYIPLLDRFLLSGVTVNDTVYLRRDDCCKEDENQGTISYSLPTADVHTASGPVIIHGPDLINGYQDDDFFLGVITNVHNKQGTIVLVNDEPGIYYCKLSYNGIELVSSSVNIVTNTPNQNKETSHNHAKEFSNSIATGESSTKLESHKKYPASVSITFSSEMWQTGYTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IQ52</accession>
    <name>A0A6S7IQ52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Tf2-6 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010643">
        <property type="protein sequence ID" value="CAB4019827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IQ52"/>
    <dbReference type="OrthoDB" id="8024815at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF7">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="270"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="274"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4019827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="344" mass="39595" checksum="5B78B9C2724A2082" modified="2020-12-02" version="1">MVTAIPASPEKMAELKEETANDETLQQLKQRMVQGWPDRKHEIPQNLATYWNIRHELSEAEDSKTTKKCKARARAILFWPGMSKDIYEKVSKCATCATYRRRNQKEPMIAHPNDTIPERPWQKLGTDLCECKGKNYLAVVDYYSKFIETALLPNKTAGTVIRHLKSIFARHGIPKELVSDNMPFNSKEFDEFAKQWRFKQTTSSPTYTQSNGMSEKAVQTVKRILKKADDPYVGLMEYRNTPVTGMTYSPSQLLMSRTTRTKIPISKELLLPHSSSLNNDRTSRSRTTTNQPNHYHHLKLEKTSTYARTVSGYQPPYLDWPLPQDRISSQHQMDNSTDGTVVTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IS83</accession>
    <name>A0A6S7IS83_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Twitchin-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089627</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010628">
        <property type="protein sequence ID" value="CAB4019790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IS83"/>
    <dbReference type="OrthoDB" id="6107607at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="Fibronectin type III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="297" mass="33004" checksum="E6D7201FB451327A" modified="2020-12-02" version="1" fragment="single">MANRVYENGSLLIDNPYCAEQVPHENFTCVASSFLGVDTQSHAFSIGALMTFPFEIILVNASQFGNRAGVVAKFESVFKDGTDSLSLRSMNVTFVNVTSGMVRFVLTWLEQRLKQKNYIVTINTKDHVNTAQLARDVRNKLKENEVDVAYFFIDAKPGPATDLSVKNVAKKEITFSWTKPDYFTVDYYQIQTNDGGGSNWDNRAQAPGDKTSFVLKGLVSGTKYLIRMESVNNKGTGIPSEHVQAKTDDDDSVSVVIIVVVVILVVLVLIAVVLGVLYYRHKPTRDDLVVITMDDNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IWB4</accession>
    <name>A0A6S7IWB4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A053944</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006567">
        <property type="protein sequence ID" value="CAB4009771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IWB4"/>
    <dbReference type="OrthoDB" id="5988188at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004244">
        <property type="entry name" value="Transposase_22"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11505">
        <property type="entry name" value="L1 TRANSPOSABLE ELEMENT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4009771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="198" mass="23153" checksum="E1457C33AFCA380B" modified="2020-12-02" version="1">MPVTRQTTYQPDEFRADMKEAIQSELHQFFKSSYFKTILSEAVNTLIEQSVQQATFPLIKRIEALEAELTKVTIKANENEQYSRKYNLRIIGLVETDGEDCVQKVVQFVDEKLHLNILKEEIDRAHRLGPKISTQSRPLIVKFKSYGTKAAICKRRKDLKGTQFYINEDLTKYNVNLFKYAREHNTHIKSVWTTDGKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J278</accession>
    <name>A0A6S7J278_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Microfibrillar-associated 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A034393</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MFAP1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012348">
        <property type="protein sequence ID" value="CAB4023159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J278"/>
    <dbReference type="OrthoDB" id="1111734at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033194">
        <property type="entry name" value="MFAP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009730">
        <property type="entry name" value="MFAP1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15327">
        <property type="entry name" value="MICROFIBRIL-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06991">
        <property type="entry name" value="MFAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Micro-fibrillar-associated protein 1 C-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="140" mass="16712" checksum="491247C821A26BFC" modified="2020-12-02" version="1">MEKERIEAERLHNMTEEERLFELRNNPKVVVNKMPKGKYKFLQKYYHRGAFFLNEDDQVYRRDITNPTLEDHFDKTVLPKVMQVKNFGRSGRTKYTHLVDQDTTSFESPWAQESTLNLKFQATHSAATKQVFEKPSKQRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J2A1</accession>
    <name>A0A6S7J2A1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tectonin 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A079676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013023">
        <property type="protein sequence ID" value="CAB4024417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J2A1"/>
    <dbReference type="OrthoDB" id="6007874at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006624">
        <property type="entry name" value="Beta-propeller_rpt_TECPR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19193">
        <property type="entry name" value="Tectonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00706">
        <property type="entry name" value="TECPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="139"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4024417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="261" mass="28619" checksum="9DC021CA3535806A" modified="2020-12-02" version="1">MKRICLNRVLFLFCVCILGCHEAHAICGGEKEQRFIKISQDGLAEVNPFNRTTVASNVLCSFDCASRLPCWSFVYLKQATTENCLLSRDANGGSSSEDSETFIGTTKRPNIDEAVCDHDKCQRGSKCIACSSDSYECECPPWASGRLCQNLNPDYNQSLLPWKRGRGYGIVTVDIAFNIAWCTTSDHKIFINVNGRDGTWVNVGGRLSQISIGESGVWGVYTTGAIYYRGGKTASNPSGTVWYLNIGLLIKITSGPPGKQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J5N8</accession>
    <name>A0A6S7J5N8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014695">
        <property type="protein sequence ID" value="CAB4027256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J5N8"/>
    <dbReference type="OrthoDB" id="6015684at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4027256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="24047" checksum="12DC753038814AA6" modified="2020-12-02" version="1">MYVDDVLDSSETIESAQNLRRQLSDLLGLAGFRLRKWSSNEPSVVASIPESDRLSAVEINKEEPSKTKTLGVLWDPERDVFTFRVEPPDAKIIFLSVLDKHAPIREKRVKNIPNIPWLTNAIKKQIRERDRLKFLAVKYNSENYWTAYKTSRNHITSTLREAKTAYYKAQFESVKHDPKKAWKTVNKILNRKQECREIYCIHTQNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J8M2</accession>
    <name>A0A6S7J8M2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tigger transposable element-derived 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A026210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007957">
        <property type="protein sequence ID" value="CAB4013632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J8M2"/>
    <dbReference type="OrthoDB" id="6115549at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050863">
        <property type="entry name" value="CenT-Element_Derived"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004875">
        <property type="entry name" value="DDE_SF_endonuclease_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19303:SF74">
        <property type="entry name" value="POGO TRANSPOSABLE ELEMENT WITH KRAB DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19303">
        <property type="entry name" value="TRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03184">
        <property type="entry name" value="DDE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE-1" evidence="2">
        <location>
            <begin position="24"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="179"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="267"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="293"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4013632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="382" mass="42560" checksum="161D2ECD6FCB1279" modified="2020-12-02" version="1">MMIFKRKRNRPELVDHAPAGTIGRCSPNGWIDADLFLDYLKHFVTFTKCSKDSPVLLILDGHKTHTKILSTIEYARDNGVVILSLPPHTSHKLQPLDRSFFKPLKSAFNAACSTWMRNHPGRRITVDKLGELFNAAYLKAATIENAVSGFRCTGIVPLNKEILPSSDFLEDPRVVGTPSDETLSSLANTANQSPSHEEASSSEAQTRESFPATEETTLMPPVSSEPRNSSPTQDEPPAVDHVSFSMIMKLPTLTEKKKSKRSEESRIVTSSPYKQSLVENIAEQNKKSKRKLSAKEKKSKKAEDQLPKAKKAKTDNKKSAKAKNVNMDIEEDSQCPMCDGFWTESLPGEDCVQCCKCEKWLHEDCCCSVTPTTVICDICYDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JAS1</accession>
    <name>A0A6S7JAS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transient receptor potential cation channel subfamily M member 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A030039</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014990">
        <property type="protein sequence ID" value="CAB4027738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JAS1"/>
    <dbReference type="OrthoDB" id="5987862at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031037">
        <property type="term" value="P:myosin II filament disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903013">
        <property type="term" value="P:response to differentiation-inducing factor 1"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04515">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992:SF2">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4027738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="290" mass="32804" checksum="203716A4AC3C431F" modified="2020-12-02" version="1" fragment="single">PPKKAKRRAMSLPSPKKSSSKHDNSSKYPKSLSVKDMLHLGKALPKKESTIISIFQFNFKHMRWSSVPIKAEFMIEELPFATGGFREAFKATSITAGFEETTWVVKKYLTTAVDVIRETNETEQTHAQKSVQMHYLAKNFASQLNEKIVKDGITDFGETFSYKKVFMGKTDDGEYVTIEEYIDGDFVKYINNDGDICEDGDICDKAQAFAHFTYEKSEGKLIVLDIQGAGYNLYDPEIASLHLLGDEGNYMFCTGNLSETAITSFFGIHECNKFCRLLCLKLRPKKTNAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JGL9</accession>
    <name>A0A6S7JGL9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A027421</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016725">
        <property type="protein sequence ID" value="CAB4030227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JGL9"/>
    <dbReference type="OrthoDB" id="7759031at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000003">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000026">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="5" id="KW-0229">DNA integration</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4030227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="683" mass="76940" checksum="9C757CC2481F0695" modified="2020-12-02" version="1" fragment="single">MAKVLDLPKLQPFTLGETSTISQRWRKWIKSFEYYIAASGINDKKQQRAILLHLAGPEVQDIFETLEDTGNDLDTAIAKLTSYFEPQKNIPFERHNFRQTTQLQGETIEQLAIRLKHQVKFCEYGNPNDMIRDQIIEHCSSSRLRRRLLREPELTLEKTVEIGRRSNIVCYCCGNAGHRAKDPRCPAEGMSCNKCHKLGHFARVCRQLKPTNKPEFQNPTSKNKNEIYKQNTGSHGEIRYVYGAPHPATGKSLSDDEYVFELGATGKMPHATVQIGNFPVDLIVDSGATVNVLDNEIFAKIKANSPITLSKTNLKLFPYGSSTPLSIQEHENFHPIQNTCNGDNLFMQTLVTKYPQVFNGIGKFKDLQLHLHFDESVPPVAQAPRRIPFHIRKAVQTKLDELETLGIIEPVKGPSPWVSPLVAVPKPNGDIRVCVDMRQANSAIIRERHPIPTIEETLQELQGATVFSKLDLRSGYHQIELHPESRPITTFATQKGLYQYTRLMFGVSSAPEVYQHIIQQILQGLPGVRNISDDIIVFGKTKDEHDQNLNNVIQRLQESGLTLNKDKCLFGVSNLTFFGHEVSASGVSPDTKKVEAIREARVPTNAAEVRSFLGLATYCSRFIPNFATVADPLRLLTRKSTPWQWNSIHQNAFDTLKNLLTGNTVMAHYDPSAPTHLRVDASP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JQ89</accession>
    <name>A0A6S7JQ89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001963</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017538">
        <property type="protein sequence ID" value="CAB4031330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JQ89"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="123" mass="14625" checksum="6F9091B9971E622B" modified="2020-12-02" version="1">MATITSKECAVHFVGSKYEQLKSFSSKTFEKLITLRKRWTNLSNNVGDVCRNSHKIISENYENQFTQISNEGEKESFANGYYFHLECYRKVANVSKLEKSEWNPKNEIHDQHHCIRERYRKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JY98</accession>
    <name>A0A6S7JY98_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A011056</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011201">
        <property type="protein sequence ID" value="CAB4020951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JY98"/>
    <dbReference type="OrthoDB" id="9990035at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4020951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="57" mass="6668" checksum="C1793F41E72AB179" modified="2020-12-02" version="1" fragment="single">MECYKEACCRSINYKKTSTFQNEPNCEILHNVVHNSSENALMKTSSFDYVYLLDPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JYA8</accession>
    <name>A0A6S7JYA8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A047073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022465">
        <property type="protein sequence ID" value="CAB4036837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JYA8"/>
    <dbReference type="OrthoDB" id="5953030at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="494" mass="56347" checksum="CC24576DB4DB88C1" modified="2020-12-02" version="1">MTRPPAPWMQSCVIQELKIKRDTLRAEAHATNTAKSWNAFRQVRNRIKSDIGKAKRRFVTKSLLSKRPKEVWRVIHRILNPSHKTIQADPGKLNQFFITTSHRTLGSKSDADAVGNFTRHVQSLQEHTTQGHTFNLQQVTVREVEREVDRLRNDTSTGVDRIPAKFLKLEKQDIAGPLTHIINTCIRNSFFPETWETPRVSPIPKVNQSSCDSDFRPISILPAMSTVFERLVLNQLVKYIDDQALLCSTISRFRKGHSNSTITVLLGIRDALIQASKKGEVTLMVCADYAKAFDTVEFKTVLMKMHNLGFSKDFLLWMINYLSNRKQFVQIDDKQSSLATVQFGVPQGSILGPVIFNLYVADLQDKLQCLRFQYADDTTFLIDSKPSDLHLCANEVNGAISRLREYSEGCNLALNLSKTKWMLISTLQMSRIHKLDERLLAIMCDDTPLERISCTELLGVYIDQHLAWGDQVNNLLSSCYGILKVLRRLKRLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K0L0</accession>
    <name>A0A6S7K0L0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">UMOD/GP2/OIT3-like D8C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A029636</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023405">
        <property type="protein sequence ID" value="CAB4037727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K0L0"/>
    <dbReference type="OrthoDB" id="5963120at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057774">
        <property type="entry name" value="D8C_UMOD/GP2/OIT3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36191">
        <property type="entry name" value="ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36191:SF4">
        <property type="entry name" value="VWFD DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23283">
        <property type="entry name" value="D8C_UMOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="UMOD/GP2/OIT3-like D8C" evidence="3">
        <location>
            <begin position="70"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4037727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="16622" checksum="57A9FA92D2647F03" modified="2020-12-02" version="1">MDLKLVEVEKNNPKLLSNRQECSSYTLLDNQDRNIKYTGGSSDLCDDGISSGWYRFGGAAGSQLSTICVPRKDTSKRKCHTDAVSWLNGAHPSVSDGKVTREVCFSWDGNCCRWNKNIEVINCGLFYIYKLVSSPVCSGRYCGTDVCILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1X0</accession>
    <name>A0A6S7K1X0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A035222</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008755">
        <property type="protein sequence ID" value="CAB4015538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1X0"/>
    <dbReference type="OrthoDB" id="6049633at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00057">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.260:FF:000002">
        <property type="entry name" value="Coagulation factor VIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543:SF325">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00231">
        <property type="entry name" value="FA58C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="159" mass="18661" checksum="9D7D8327C7FDA7AE" modified="2020-12-02" version="1" fragment="single">MHYLVNACKDPKALGMQSGKIPDSRITASSEWHTYWGPRFGRLHWNKCWISRPLDTNQWLQIDFKYKATVTEILTQGRPQTSKDQWVRSYTIAYSDDGMNFETYKVYKGQDKVFSGNTDRNSVVRHELSPVLVARFIRIQPKSWKLHISMRAEFRGCVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K1Z2</accession>
    <name>A0A6S7K1Z2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023096">
        <property type="protein sequence ID" value="CAB4037448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K1Z2"/>
    <dbReference type="OrthoDB" id="10622929at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="121"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="186" mass="21676" checksum="B311F41C9D412AD7" modified="2020-12-02" version="1">MQKLTILFNAPNVFKTEMKTFYNHHLLYTGSYPVENSFYLIWFQDEDKYSIVEKKNIVEKEVNLREMLTVKGAKGRWTGRLMFVGSKGDCQTRLTNYETMLSPATEDKYRDDGESENGMEGQKENEKQEGSQKKKRKTSALQSDSEPEEDANLSPKKTMAQDVENEMLKVKNLLKKKVRKLLQFLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K7R0</accession>
    <name>A0A6S7K7R0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A083016</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023598">
        <property type="protein sequence ID" value="CAB4037910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K7R0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="107"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="129"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="18605" checksum="35B99881F87F9CB2" modified="2020-12-02" version="1">MGTQRRRTKPETEATAMNTKARQMLHPKNLKRTQHPAVTSRLGSVLLRRTQLKIYNIQSGGLLKIIMPRPARRKREKEKELAETAKRMRKLTSFFNSAPTKEVDFGSNSTQPSTTETPPTCSSHHSDSESNFNDPGPTSSSEIQVAQPTELSTPTASDNLASDNHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9B8</accession>
    <name>A0A6S7K9B8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Gamma-tubulin complex component</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A088890</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Cytoplasm</location>
            <location evidence="1 6">Cytoskeleton</location>
            <location evidence="1 6">Microtubule organizing center</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the TUBGCP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026185">
        <property type="protein sequence ID" value="CAB4040031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9B8"/>
    <dbReference type="OrthoDB" id="78652at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000930">
        <property type="term" value="C:gamma-tubulin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000922">
        <property type="term" value="C:spindle pole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043015">
        <property type="term" value="F:gamma-tubulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051011">
        <property type="term" value="F:microtubule minus-end binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031122">
        <property type="term" value="P:cytoplasmic microtubule organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051321">
        <property type="term" value="P:meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007020">
        <property type="term" value="P:microtubule nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000278">
        <property type="term" value="P:mitotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051225">
        <property type="term" value="P:spindle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1900">
        <property type="entry name" value="Gamma-tubulin complex, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007259">
        <property type="entry name" value="GCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040457">
        <property type="entry name" value="GCP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042241">
        <property type="entry name" value="GCP_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19302">
        <property type="entry name" value="GAMMA TUBULIN COMPLEX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19302:SF27">
        <property type="entry name" value="GAMMA-TUBULIN COMPLEX COMPONENT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04130">
        <property type="entry name" value="GCP_C_terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="4 6" id="KW-0493">Microtubule</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4040031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="88" mass="10601" checksum="9EBDA96B90B12658" modified="2020-12-02" version="1" fragment="single">MELQNVWTMYKGRRAAQKGISKDIWLLRMEMTFLVDNLQYYLQVDVLETQYSILLEKINSTRDFETLRLAHDQFITTLHAQSFLLMRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K9E7</accession>
    <name>A0A6S7K9E7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Poly(U)-binding-splicing factor half pint, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A057724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020026594">
        <property type="protein sequence ID" value="CAB4040298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K9E7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053300">
        <property type="entry name" value="Homeobox-like_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45795">
        <property type="entry name" value="EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45795:SF1">
        <property type="entry name" value="MACRO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4040298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="275" mass="30297" checksum="11CCDC454E7AAD06" modified="2020-12-02" version="1" fragment="single">KYFQIFVDEFFVVSMVSRASMVSRVSRVSMVSMVSRVSMVSRVSRVSMVSRVSRVSMVSRVSRVSRVSMVSMVSRVSKVSRVSRVSKVSRVSRVSMVSRVSVVSRVSKVSMVSMVSRVSMVSRVSMVSRVSRVSMVSRVSKVSMVSKVSMVSRVSMVSRVSMVSRVSMVSMVSMVSRVSKVSMVSKVSMVSRVSMVSKVSMVSRVSMVSNVSRVSRVSKVSRVSMVSRVSMVSRVSKVSRVSMVSRVSKVSRVSRVSRVSMVSMVSRVSRVSMVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KB06</accession>
    <name>A0A6S7KB06_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A009530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009630">
        <property type="protein sequence ID" value="CAB4017628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KB06"/>
    <dbReference type="OrthoDB" id="5988189at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47018">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="93"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="22111" checksum="2EE9351498078D2E" modified="2020-12-02" version="1">MMAFSWSHCIICQKDTSEEVRCPLRSRGADKSDPRSVYNSFLQNVSGFRDSLDVILPVCLTLPLELNVDALIEKEAAWHKSCHLHFSKSKLNKAKEKATRKRKQDQAKPEQEKPTKIRILSSSIKKNCKENCILCDQTCTGPLHNVTTSTNDENLHRMITELEDNTLLPKISGVDLIAAEAKYHMKCITNLQEVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KN72</accession>
    <name>A0A6S7KN72_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lipoxygenase homology domain-containing 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A082369</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020033189">
        <property type="protein sequence ID" value="CAB4043790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KN72"/>
    <dbReference type="OrthoDB" id="5950867at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01756">
        <property type="entry name" value="PLAT_repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.180.10">
        <property type="entry name" value="Catalase core domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052970">
        <property type="entry name" value="Inner_ear_hair_cell_LOXHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45901:SF3">
        <property type="entry name" value="LIPOXYGENASE HOMOLOGY DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45901">
        <property type="entry name" value="PROTEIN CBG12474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01477">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00308">
        <property type="entry name" value="LH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="177"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="189"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4043790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="23025" checksum="C3842AB161E59AAF" modified="2020-12-02" version="1" fragment="single">HDGIDRKQGWFLLEILVKNTRNKKVWTFPCFQWLSLFESDCQIKRQLQANSGTSKPVKTVYEVTVETGDIRGAGTDAKVYMTLFGSKGTTPKVLLSNRDNDNFERGKTDRFKIKSTHLGALRKMIVEHDNTGFGPGWYLYKVTVIELVKGTVTYFPCDQWLDKDEGDGQIRRQLMAAKKSTDTRKGNRHYSSSMSIRSVEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KU88</accession>
    <name>A0A6S7KU88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc finger MYM-type 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A006008</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017650">
        <property type="protein sequence ID" value="CAB4031463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KU88"/>
    <dbReference type="OrthoDB" id="5962488at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="entry name" value="Intergrase catalytic core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021893">
        <property type="entry name" value="ZMYM2-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12012">
        <property type="entry name" value="DUF3504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="DNA breaking-rejoining enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0832">Ubl conjugation</keyword>
    <feature type="domain" description="ZMYM2-like/QRICH1 C-terminal" evidence="5">
        <location>
            <begin position="24"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4031463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="232" mass="26519" checksum="38D806BDD69FA906" modified="2020-12-02" version="1">MKATHREGESLAENRTRREKEAVTGDEEGLLWSKGLLEDKTAQSLVYTIYFYIGKIFGLRACEHRQLRLSNFVIENNKICYRENISKTFHGGLKDLKKKPRIVTRYCHEDEESVHEPCLVQMFKQYISLVNELNSIVPFLMKEAGLAIKTAHCLRVTTATNLFCAGHQEKLIRERTGHVSSALFTYEKPSNDQAMTVSKYVGPSVSKIVSLVDNCFKPPSKPKEDEKFQISD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KW50</accession>
    <name>A0A6S7KW50_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071053</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039124">
        <property type="protein sequence ID" value="CAB4045381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KW50"/>
    <dbReference type="OrthoDB" id="4369127at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="130" mass="14424" checksum="83A789279B90A4E9" modified="2020-12-02" version="1">MAYVGWVELKFQVQDSANGVSVPFLVTQENLELPLVGFNVIEHMINSGTLQENDILTSFVGINTHNAVTLLDLVKEINHGELCLVKTPKKDPVIPRGIPKVAKIRCRLSRAQTKIRGRSSPNPAHSRDSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LJF5</accession>
    <name>A0A6S7LJF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A049183</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023615">
        <property type="protein sequence ID" value="CAB4037923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LJF5"/>
    <dbReference type="OrthoDB" id="73997at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030488">
        <property type="term" value="P:tRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019442">
        <property type="entry name" value="THADA/TRM732_DUF2428"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051954">
        <property type="entry name" value="tRNA_methyltransferase_THADA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14387">
        <property type="entry name" value="THADA/DEATH RECEPTOR INTERACTING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14387:SF7">
        <property type="entry name" value="THYROID ADENOMA-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10350">
        <property type="entry name" value="DUF2428"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="280" mass="31575" checksum="4824010956903780" modified="2020-12-02" version="1" fragment="single">MLQVCYDVTDVVSPVVTNSSPEGNICDNDNDENDEVLDHFAPKAQILLVCCWRAMKEVSLLLGEITKRAPVKEKDQSYGLLSFEQFEEIGQLFTKILLTSKHRGAYELAHEGFVKLCHMLWRCEQGEIQRLPGVFLTKLLNDISSDNPTPWLCGTRRSAGLPFFFKAIVTTEPNTTGKCYFKSVMKELLKTAAKPVNTQDTNKDTTLPQVHARNILRALYKETKLGEDVFPYVADGVHVAVEGFLSEIWAVRNSSTLLFSALMNRIFGPQSVQEEKRRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LN38</accession>
    <name>A0A6S7LN38_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020873">
        <property type="protein sequence ID" value="CAB4035259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LN38"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4035259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="121" mass="13841" checksum="712904E41973DA3F" modified="2020-12-02" version="1" fragment="single">MNPSIIGRVLANDKERMLRIFSRFVFIPYKKLQTKEGSLKKSLALQAAMKEVMAQVIRSVGVILQLRDDFTGRQEDELFNEHIQQEENATSDVQFNGNGNKDLMIEVIEEVLTKVTEDPQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LPC7</accession>
    <name>A0A6S7LPC7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064398</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022072">
        <property type="protein sequence ID" value="CAB4036469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LPC7"/>
    <dbReference type="OrthoDB" id="412006at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4036469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="184" mass="20731" checksum="57C548602F3D8B33" modified="2020-12-02" version="1" fragment="single">MFPNKILKTFAFELAPVISDIFNSSMTQGTFPKALKRSIVVPVPKVSPPKSIEDDLRPIYLTSQVAKVMEDCTLDNFFPEVVNKLDTKQYALPKKSTTHALVYLLHSILVALERGSCTARLFFADFKKGFDLVDHNVIIKELTLLSTHPSIIRWIKAFLCDREQCVRVGTSMSSWKKTNGGLPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LR59</accession>
    <name>A0A6S7LR59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004767</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028528">
        <property type="protein sequence ID" value="CAB4041572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LR59"/>
    <dbReference type="OrthoDB" id="5987050at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="15141" checksum="C8275728F7A56E03" modified="2020-12-02" version="1">MINFSFEKLWEEMETNIPFVMEILNAITGVEGCKAKQDLRAKYGFLYSILMNVRWHELSLIQRLNTLCLIEGGCSKQLQHRLNKLGVCLSHSRRTTLLTLLGGHFLDKTVEKLIRVGRLFVVREITGTKEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LS66</accession>
    <name>A0A6S7LS66_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A079478</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029507">
        <property type="protein sequence ID" value="CAB4042123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LS66"/>
    <dbReference type="OrthoDB" id="370281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051068">
        <property type="entry name" value="MFS_Domain-Containing_Protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23510">
        <property type="entry name" value="INNER MEMBRANE TRANSPORT PROTEIN YAJR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4042123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="281" mass="31815" checksum="1CEE33938926CE59" modified="2020-12-02" version="1">MGKHGWIMKLTALRFFLGGIENYIIAPTAWYYVRSFGQSKFFLALVLISFNIGAIIAGPLFGFLTDRFGNPRLITGLDGGLAILLGQIALQIDEESRGKSFLFFESVYCLGSAISPGIGSFISFRINILGWDINEGNSPGIVLAIIWLLFLIFSLFIPGTMWVETGTRIEELNFNISAYEDEKRSSEYDQDGGQRLSEDYSSEKKPRIMWDSRMFCLLFLIFTNMGFSSTSTFYAPILALDYLHLKLIHTKLIFLNCTIFTLLVFTCFHMLKNENSLQLPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D7K1</accession>
    <name>A0A7D9D7K1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A053918</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000162">
        <property type="protein sequence ID" value="CAB3979040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D7K1"/>
    <dbReference type="OrthoDB" id="407616at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000001">
        <property type="entry name" value="semaphorin-5A isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.100.10:FF:000007">
        <property type="entry name" value="Thrombospondin 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.100.10">
        <property type="entry name" value="Thrombospondin type-1 (TSP1) repeat"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052065">
        <property type="entry name" value="Compl_asym_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036383">
        <property type="entry name" value="TSP1_rpt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22906:SF54">
        <property type="entry name" value="IG-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22906">
        <property type="entry name" value="PROPERDIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00090">
        <property type="entry name" value="TSP_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01705">
        <property type="entry name" value="TSP1REPEAT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00209">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82895">
        <property type="entry name" value="TSP-1 type 1 repeat"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="184"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="224"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3979040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="25131" checksum="37B023F1EF959E62" modified="2020-12-02" version="1">MQQFYPHRKRMLTIQKRGTGVLLTWCFIMVAALYVIYVAGRHVLTVDGGYSEWSDFTACSAKCGGGAKTRTRSCTNPIPNYFGQNCSRFGVAIETLECNTQPCPIDGVFGVWGEFGPCTVTCGDGTHTRERKCDNPAPQHGGAQCLGANKETTKCQEKPCPVNGGYSDWNTWSACSVSCGSGERTRSRECNKPQPQHGGKNCEEQGFGSAKENEQCTETPCPAANTTTSAVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9D8D5</accession>
    <name>A0A7D9D8D5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078520</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000157">
        <property type="protein sequence ID" value="CAB3978982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9D8D5"/>
    <dbReference type="OrthoDB" id="5988707at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3978982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="29496" checksum="9011361CD0E827DC" modified="2020-12-02" version="1">MQIELNKIFKCMALCKQVDTEYFKDRFHGYCFSTKASGLGRLNNIVSKRCFIKPSSFGEILRSKHRRKLNLGKPCGEYSLKIWDSLGQTLDKSLQILQNRAACVITGAHFSTSSSKLLKELGWMNIQEMREENTPNEKEEVENKIKSLLRDKELDSETEKIEIERAHRLGRNRNGTKPRPIVVKFLRFQDKEMIKRNAYKFKDIGVGISDQFPKEIQEERKKLYPVFKDARSKGHKAFLVKDKLFINGQIYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DII4</accession>
    <name>A0A7D9DII4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-I Gag-Pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073919</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001012">
        <property type="protein sequence ID" value="CAB3986413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DII4"/>
    <dbReference type="OrthoDB" id="6368171at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13094" checksum="FFF24C809F47BAB3" modified="2020-12-02" version="1">MASSTCGHCYGYPHPQDQDEGLSSSSTYRSLPHPPTPVTQPHRRIPFHLRKKLDFELDKLERQGIIEPVDGLTPWVSPLVVTPKPKNPDEIRLCIDMRQPNRAILRERLLTPDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DQI7</accession>
    <name>A0A7D9DQI7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein TMEM132 C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A051600</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001820">
        <property type="protein sequence ID" value="CAB3991287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DQI7"/>
    <dbReference type="OrthoDB" id="5984912at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031436">
        <property type="entry name" value="TMEM132_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15706">
        <property type="entry name" value="TMEM132_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043837319" description="Transmembrane protein TMEM132 C-terminal domain-containing protein" evidence="3">
        <location>
            <begin position="27"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="459"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="domain" description="Transmembrane protein TMEM132 C-terminal" evidence="4">
        <location>
            <begin position="445"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="518"/>
            <end position="543"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF15706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3991287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="580" mass="65096" checksum="C8B61DB60A2422C5" modified="2020-12-02" version="1">MHETRKRIFHVWICVIPSLLVATAAGNTERTHSDQPVNHTRGNSPVSEFRTHMLRAISMLSVSRQCTILTAILEDSGENPSGVMKEFMGTVPYQHLPCVPMTSPSGSPVNMSALRRATDHYVTRLFNNLPHAFQCKIISDVTFASPGDVTKETLAETMSTISKKLKFELEDMTENCADTKNPREIITNTRVQIGVRIRKAMPLEAWLQRFREILPSIYLSYVSKSGRVGEFVSGWTKNEQGAKIPVIPTNQFLVKMQDEPITDARVALVSFSLFSRTKSGDYRLISGDEVAASFDAIDRSVLNSYIQAEVIGWRLHGKRDNARFEGMRKRKSKPSSLEIFRLQNSFPKYLVKFFKSMTSNGRCYILRQISSHVQKHLLVVEKHYHVSGLLPKKYYCSRAAKYDSTPKTKRPRPLASVWDRLDKFIQTISKPTPTTSTTILPGRNSTVIRETRPFNSMEIVMFALLCFLCLLIMVFVANCVVFTFKTKQLSSKYTANFQMQQVVFGDVGGTKDCGIKTGEGPPGKLTLTDNPQPEPSMFTGGQSSGNHQWRLLSMTSEGGATVCSDVISLSDDELERVSSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DSN9</accession>
    <name>A0A7D9DSN9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Neuroguidin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A061542</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SAS10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002034">
        <property type="protein sequence ID" value="CAB3992367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DSN9"/>
    <dbReference type="OrthoDB" id="203440at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007146">
        <property type="entry name" value="Sas10/Utp3/C1D"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13237:SF9">
        <property type="entry name" value="NEUROGUIDIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13237">
        <property type="entry name" value="SOMETHING ABOUT SILENCING PROTEIN 10-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04000">
        <property type="entry name" value="Sas10_Utp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="202"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="202"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3992367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="259" mass="29846" checksum="52196AD92FFC9E59" modified="2020-12-02" version="1">MANSEERTEVLAKDVPEIVALLSDLNEKLSDANKRVTSLIEKVDNNTMSTEKGVSFLEMKFHLLLSYLIDLVHYMLLKSHGKSIEDSPTIDRLVELRTVMEKIRPIDQKLKYQIDKLIKIATTGLVGQENDPLRFKPRPDNLVSKLEEAEDGGDEEKKPGIYVPPKVAAMPYDEDKVSRRRKLEETARRKALSSSLLKELRDEYSEAPEELKEGELFDRRKEKEIDDDKHQRRYEEENLVRLMSKKHGKVGGVENPRSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DU13</accession>
    <name>A0A7D9DU13_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A070807</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002375">
        <property type="protein sequence ID" value="CAB3994022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DU13"/>
    <dbReference type="OrthoDB" id="2435398at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3994022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="27477" checksum="70C0E7FC70D73E0A" modified="2020-12-02" version="1">MSGQSDLQLTIDEDARTLLALDTTKATGPDGIPSRLLKETARQIAPSLTQIFNKSLSCGELPDEWKLANIVPVHKKGEKSQLTNRKQRVTVLRATSSARPVLSGVPQGSILGPILFLLYPNDLLDAAEQSKIASFADDTKLFKKIDSTTDAISLQCDLSNLENWSISSGLVFDQGKCKCQCITGKKNPTKHEYKINNKSLNIFDEQHMLIAKQLNGQDENQTVNYVKSNCDQVVNYEGEQKLFFRKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DY59</accession>
    <name>A0A7D9DY59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A078549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002676">
        <property type="protein sequence ID" value="CAB3995508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DY59"/>
    <dbReference type="OrthoDB" id="6159389at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3995508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="272" mass="30689" checksum="7C9B7B049F3833BA" modified="2020-12-02" version="1">MACVNKSFWLWIKSFLSGRTQQVKINQTLSSIEGCPAGVPQGSALSPTLFNIHVDDLNTSVPEDLEVSTYKYADDCTQSECIMKGECSNMQKVLDSVQNWSSANRMKLNAKKTKDMWICFGKSIPQPPNLYIGDVMIERVNSFKLLGVSCQSNMKWNSHIKEITRQGNRRLCHLRQCRKAHLPTEVGLATYCTIIRPLLEYAAPVWGGLPHYLVNDLERIQRRSLRIICLPVGTLPPLSERRDKLINSSRNGGNYSGRKPSLSPLCPYRTEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8J1</accession>
    <name>A0A7D9E8J1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A013482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004057">
        <property type="protein sequence ID" value="CAB4001329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E8J1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="227"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="232"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4001329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28101" checksum="E99D89E07A1C852D" modified="2020-12-02" version="1" fragment="single">CFTQSGCIPKAFAYVPSFAQIFQLTHTTKSPRDEHSKHNPVDQTVNFFDKRSKEPSCPKLTAVHSELSDSVWNDLQYDLIWENVVDYTYSLCSTNSEHQQKCFELYTKAKRKSSKKTQPVLINDHAVNGFLSNVKNILLKYEYLVDDKGNGEISTKHEKLGSCSKHDCSKSTRRNDGPCCSNQSAKNDTEISRVFEQLEVCGDLLTIAEKAIDLKLEAPDHEGLSIRSNIDASEKSMMEEPSTKVRALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGH3</accession>
    <name>A0A7D9EGH3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Multicopper oxidase, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A009568</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multicopper oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005596">
        <property type="protein sequence ID" value="CAB4006768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGH3"/>
    <dbReference type="OrthoDB" id="2121828at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF394">
        <property type="entry name" value="FI03373P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0186">Copper</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4006768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="195" mass="21918" checksum="BFB6F890179EF33A" modified="2020-12-02" version="1">MHESDALPLARGQLTFAATFILGMQSYKTSGVSLKSTHFTKSFMLEEAKRRSFYSDMWILLLLAVPCLAVLPTDPPPERCFAEAATKYITCQPVFGRPAACYCTGKEPACYIKMILSKIQIKTKTKIKTLFLINGSYPGPTIIIRHRGIVAIDVYNTMNEDTSIHFHGMRQKNVPWIDGVGNITQYPVQAYGKFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EN28</accession>
    <name>A0A7D9EN28_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072382</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008227">
        <property type="protein sequence ID" value="CAB4014273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EN28"/>
    <dbReference type="OrthoDB" id="7444419at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954:SF3">
        <property type="entry name" value="PROTEIN CBG08539"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22954">
        <property type="entry name" value="RETROVIRAL PROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="93"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="293"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="104"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="295"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4014273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="40927" checksum="6F4C6FE01139C768" modified="2020-12-02" version="1" fragment="single">MAHAYKKNEHEKCDDKSKLAPHVVKLTLYKKTLEDKLVVFQQQDNAILELGGDDVELEIEQADILRENMQSTILEIENTSTEITQSNESANIVIENSPTPPTPQNSSTPPTPQNNQTETLNLKKFRGDITTWSTFWDTFESVIDKNPSLSDIDKFNYLNSNSLLENTAADAISGLTLTSGNYNEAIIILKKRFGNKQLAINKHMDILLNLDPVTSVQNLKELRSLYDTVESHIRALKSLDIPSQLYGNLLCSMLMNKLPQDLRILINRDIKNDNWDLDRLLELLEAEVEARERATSNSSAGSSNLHRNPHPSYKEDNYRLAQSYRRGAPQSVVLIAKVHTPLIVVKLSQMSHPERTFYEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ERH7</accession>
    <name>A0A7D9ERH7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A076545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007917">
        <property type="protein sequence ID" value="CAB4013537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ERH7"/>
    <dbReference type="OrthoDB" id="5976606at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="21115" checksum="9D8893DE46828AAF" modified="2020-12-02" version="1">MRRHFKRNRVIVGGIDQQWQMDLADMQSMQKFNDGYRYLLVCIDVFSKYAWVVPLKNKTGPTLVEAFKVILSSGRKHEKIMTDQGTEFLNKHFRALMKEEEIELYNTYNETKASIVERLIRTLKTKMWRYFTPRKTMRYVDMLPDLVYSYNHSVHRSIKTKPAEVTVENESKSVAHSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ERI6</accession>
    <name>A0A7D9ERI6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A032609</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007924">
        <property type="protein sequence ID" value="CAB4013557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ERI6"/>
    <dbReference type="OrthoDB" id="2371919at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd03714">
        <property type="entry name" value="RT_DIRS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052055">
        <property type="entry name" value="Hepadnavirus_pol/RT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33050:SF7">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="483" mass="54571" checksum="EC2C258BD9D1E78F" modified="2020-12-02" version="1">MVSLAQEEFSQICLDQVLNNGSKQDLRLQRLSGKHLEQATPFFVGRPSGDSTDLMGADKDSTSRPFACSVPEGPCSTGGTETEAVAHFQDLQIPRLTSHSTNKEIQTRLFTQRYVFRTFSGQFDSKYTSNGALKVFHPRMGNDHTGPLDPAGHPGLPDRTCNSSSATVITQCTEAFFNTRDCVGARGKRIVDEAGNSSSTIPKGRIYKFYLCGTQERWGNCPVVNLKPLNQFLGYKHFKMEGIHMLRDLLKKGDFLVKIDLKDAYLTVPIWKNHQKYLRFLWKDTMLEFACLPFGLATAPRVFTKLMKPVVGALRQRGIRLIIYLDDILIMAESHDLASHHAALTLNLLEGLGFIVNYQKSQLLPCQEMEFLGFLIDSNAMILQLPGEKLRKIRRKCQKLLDQTTISVRELSKFLGLLTSSIQAIFPVPIHSSLQTYEAQVALDQPAREEILWWRDHLHAWNGRALFQDPVELIIETDASRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ESV4</accession>
    <name>A0A7D9ESV4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ral GTPase-activating subunit alpha-1-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A081076</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008782">
        <property type="protein sequence ID" value="CAB4015609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ESV4"/>
    <dbReference type="OrthoDB" id="6021142at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051056">
        <property type="term" value="P:regulation of small GTPase mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.11210:FF:000001">
        <property type="entry name" value="Ral GTPase-activating protein subunit alpha-1 isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11210">
        <property type="entry name" value="Rap/Ran-GAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035974">
        <property type="entry name" value="Rap/Ran-GAP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000331">
        <property type="entry name" value="Rap/Ran_GAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027107">
        <property type="entry name" value="Tuberin/Ral-act_asu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10063:SF11">
        <property type="entry name" value="RHO GTPASE-ACTIVATING PROTEIN CG5521-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10063">
        <property type="entry name" value="TUBERIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02145">
        <property type="entry name" value="Rap_GAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111347">
        <property type="entry name" value="Rap/Ran-GAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50085">
        <property type="entry name" value="RAPGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="268"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="277"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4015609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="298" mass="33042" checksum="FD36619F8076A844" modified="2020-12-02" version="1">MSVTLVRFGGFSKVKVELSTHTGFMGGLDKNQSTGTTAVYYANSTVEVMFHVATRMPVSSDEGGFIKKVRHLGNDEIWIVWSEHSRDFRHGIVNAEFGDVVIVIYPLQNHLFRIQMLKKGDIPYFGPLFDGAIVDRRVLPPLVRMTAVNASRAKRSLIPGMQTYYEERASCISNIVTHHKETTVFEDFTGQVFCPVPRKTEENNQVFSISSHLRQQASGGESPAAKREGYSTLPSSKTIAKTIAVEKELAISGTLSLPEGLHKVVQSDSTFSAPKLGGKKMSFRRKLTPSTTKEENAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EZK3</accession>
    <name>A0A7D9EZK3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat 28</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045267</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010693">
        <property type="protein sequence ID" value="CAB4019928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EZK3"/>
    <dbReference type="OrthoDB" id="5954753at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098">
        <property type="entry name" value="RAPSYN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10098:SF108">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="845" mass="95412" checksum="B112F7B89BA27EBC" modified="2020-12-02" version="1" fragment="single">RSALGLAAEADSNTISELQILLNTYRRGLARLLQGKCCYHLIQSEYMEVYYYANELKNVATNLSNTEFSQDAKSLLSKKFVKDMNLGVKSDLLKTHSDIVQDNLQFIEQLTSNELAIQEYMLLRQLFGVHMLHCDFQFCLDLSNQLLKIAISVQDRERTIDMLAESANLYLVLGKHQLSYDVMKEMQALKINDCRTQCVVVCNFSVVELLLGLKSESLQHAQNCLGLALQTGDQGYIACAYGNIGLAFEYMGKYDEAIEPYKRCLQIGQEVSDDRVTNNGLCNLGRAYQGLGDIEKAKYYFKKAIETPRPPQAYWCDTEEFRFSGDYLLAKLFLEEKNLDEARKQFTKVIQRCEMLRKRIQDSPMKITFNDTQRKPFQYLQHVMLEEGKKLEALVVAEKGRGRDFFDKIEGEFCTQLNFEEVLLDMIKSRSIAVLFISTLEEVGKLCLWFISSEGKLLKQCSIPYTECYDVFTKFCVALYRTQGRHEIEFRGTTEDECSLIDKAFELIKRDTSDHENSDANSTKLDTMGETTTNARTFFSKNRSREQANVCREEPLSSEENDTLSDLIDTLSELILSPFRKELLEKLVNTRTTNDMPRLLIIPQGTTFNIPFAALKLNGNPLCNHVTIVEAFSLNSFAYFTTESEKRATTGNFENALIVGNPTHDLPGAEKEAKSIAKVLGVTPLVKDQATKEAVMGQLPSARLIHFACHGETDGKGLALACDSRTSYYDCHLTAKDVESMALDADLVVLGACHTARGKINSEGVVGLARAFQIAGARSVVTALWAIPDGATEYFMEQFYDNLRRGQPIADAIRTTQVTMLERQDFNDVINWGSFKVFGANAKIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HFL3</accession>
    <name>A0A7D9HFL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TGF-beta-activated kinase 1 and MAP3K7-binding 3 isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A064588</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000303">
        <property type="protein sequence ID" value="CAB3980572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HFL3"/>
    <dbReference type="OrthoDB" id="6367910at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.380">
        <property type="entry name" value="Zn-finger domain of Sec23/24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036443">
        <property type="entry name" value="Znf_RanBP2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46253:SF1">
        <property type="entry name" value="TAB2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46253">
        <property type="entry name" value="TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00547">
        <property type="entry name" value="ZnF_RBZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90209">
        <property type="entry name" value="Ran binding protein zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01358">
        <property type="entry name" value="ZF_RANBP2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50199">
        <property type="entry name" value="ZF_RANBP2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="53"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="463"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="434"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="87"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3980572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="594" mass="65505" checksum="46F500427549A880" modified="2020-12-02" version="1">MSLTPESQASKSRLQLEEYRGKFPEIPEQDLLQIVQKYASDPESCQKILEQESKKCLYGSSPTPDPPSPLKVRSRTDGVSPFDLPRSNSTGSAGSSHSSGRSTPVNVIPTPYVVPPRYPVATTAGQVVTPVHTGGLPPGTVCINGNYYQLVPSTGHVPGMPTNNPQNTSPSASVANHTSPNTGYPIYSTNGYFTTDSGRNTPKNPPISTVAPQGVGPGMSIPTGYFSPASQTQGYSTSYPVAGLFDPRYHTLPGNIPLPMISTPNMPTSSNVRPLCSTSPANRQEAATLMTDERRHLNISPNRMGVHSGQFDTRFQTNPAGNSSRQNLEPLYISTSPGMNSPEILRRLNRSGGSPEELQKALGALGVVNRQPVANDDYLRACFSHQQKRFQKLQKEYSIEKERLDIVIKDITERDGALYDMKYIVEPNPTDEQLARLSEENEKLKRTIDEISKNIDRLENGQAFLPPADPRIHDTQRLPSSPRHGRETIDRSNSVPCLRPEKGRVPPPPLSRPLSEHDIQDHLLHVNKDNVHYQIKPSHDTTLPGWDFINPTNPDPIPPANYDDDETQWSCSRCTFLNHESLTVCEICSSSRHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HM91</accession>
    <name>A0A7D9HM91_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A027848</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000692">
        <property type="protein sequence ID" value="CAB3984064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HM91"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="206"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="248"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="94"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="277"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="170"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="277"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="297"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3984064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="318" mass="35994" checksum="F8F09145B23BBE19" modified="2020-12-02" version="1">MKYALFEFVNEKACEIGETQWITREDPETFQNINWDVEKEIIVAWPTEFSKVSKKIVKGSIDPLKVSTTTCVARVLKFSDDYESIRQHMTRYIETGSIATPSHGRGQRTSQKTSRYDDSNEESEQERSPKRQKRQQHSRNDSTSDAAIQALKAKYNFHNNKVLCASQSQSAETEDNNTTNDDQIKELKKENHDLQQEIKKTKKLHICMALLTTSKVLFFFLILLPMILPNFAFFLLNEAMFCKLTISIFLKLALSAIPSLPGIVTDLRKQVEKLKDGNSSSISSSSGSLHNSPLSAGTLSRSPSLKESANSDDESDVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HNP9</accession>
    <name>A0A7D9HNP9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Tf2-9 poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A068453</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001517">
        <property type="protein sequence ID" value="CAB3989597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HNP9"/>
    <dbReference type="OrthoDB" id="5986604at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000003">
        <property type="entry name" value="Protein CBG25708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF14">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="689"/>
            <end position="712"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="726"/>
            <end position="760"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="742"/>
            <end position="754"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="774" mass="87306" checksum="84EA33C91C9EC875" modified="2020-12-02" version="1">MGLFQYNRLVFGITSAPAIWQRTMDQILEGTSGISCILDDMIVTGKSDAEHMANLEEVLRRLHHHGLRANKSKCEFFKEKITFCGHDINSEGLHKTTDKTAAMVNAPRPQSVAEVRSFLGLVNYYHKFLPNLATILHPLNQMLESNYQWNWTDQCEEAFCKVKAMIVSDLVLTHYDPNLPLQLACDASPVGIGAVLSHVMTHGTERPIAFASRSLSKAERNYAQIDKEALATVWGVKKFHNYLFGRNFTLLTDHEPLTSIFHPSTSLPVVTAARLQRYALFLAGFDYTIRYKNTKLHGNADGLSRLPLHSETTEGEPDPVGLFYATQFEPLPVTAEQVKRETQRDPLLVKVHELVMKGWSTPQDEAIKPFYQQKDELTVHCGVLMLGHRAVIPAKLRNQVLTELHEGHLGIVKMKSLARSYIWWPKIDKDIEHLAKSCPGCQLQQNEAGKVPLHPWEWPTTPWQRIHLDFAGPFLGRMFLIIVDAHSKWPEVEIMPSTTSTQTIDRLRTIFARYGVPAQVVTDNGPQFTSAEFQLFLKTNGIKHITTAPFHPATNGQAERFVQSFKHAMKCDKQSASQLKTNMAKFLLAYRNTPHSTTGRGPLRTRLDLVKPDLQRKVMNRQIDQAGRKGHSPTRQLSIGQTVMARNYSGKDKSLPGIVRAQTGPLSYEIKVGPNRIWRRHIDQLRASSVKVNDQSDDTAEPHPELGETGQNIAPAEEIVAEPDIELATNPPVVQQEAGRATTGSEQRYPTRSHQPPERWGLNCLIRKLFKKTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZN8</accession>
    <name>A0A7D9HZN8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Aminomethyltransferase</fullName>
            <ecNumber evidence="4 12">2.1.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 12">Glycine cleavage system T protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">PACLA_8A042372</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="15">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">The glycine cleavage system catalyzes the degradation of glycine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 12">
            <text>N(6)-[(R)-S(8)-aminomethyldihydrolipoyl]-L-lysyl-[protein] + (6S)-5,6,7,8-tetrahydrofolate = N(6)-[(R)-dihydrolipoyl]-L-lysyl-[protein] + (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16945"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:10492"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83143"/>
            <dbReference type="EC" id="2.1.2.10"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3 12">The glycine cleavage system is composed of four proteins: P, T, L and H.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 12">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the GcvT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.10" evidence="4 12"/>
    <dbReference type="EMBL" id="CACRXK020002930">
        <property type="protein sequence ID" value="CAB3996704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZN8"/>
    <dbReference type="OrthoDB" id="10263536at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005960">
        <property type="term" value="C:glycine cleavage complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004047">
        <property type="term" value="F:aminomethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006546">
        <property type="term" value="P:glycine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.110:FF:000002">
        <property type="entry name" value="Aminomethyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.1400:FF:000001">
        <property type="entry name" value="Aminomethyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.1250.10:FF:000002">
        <property type="entry name" value="Aminomethyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.110">
        <property type="entry name" value="Aminomethyltransferase beta-barrel domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1400">
        <property type="entry name" value="Aminomethyltransferase beta-barrel domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1250.10">
        <property type="entry name" value="Aminomethyltransferase fragment"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="entry name" value="Probable tRNA modification gtpase trme, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006223">
        <property type="entry name" value="GcvT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028896">
        <property type="entry name" value="GcvT/YgfZ/DmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GcvT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCVT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00528">
        <property type="entry name" value="gcvT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001567">
        <property type="entry name" value="PRK00389.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757">
        <property type="entry name" value="AMINOMETHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757:SF2">
        <property type="entry name" value="AMINOMETHYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006487">
        <property type="entry name" value="GcvT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="Aminomethyltransferase beta-barrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103025">
        <property type="entry name" value="Folate-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 12" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="8 12" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 12" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="GCVT N-terminal" evidence="13">
        <location>
            <begin position="48"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="Aminomethyltransferase C-terminal" evidence="14">
        <location>
            <begin position="329"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006487-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CAB3996704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="417" mass="45579" checksum="68797370D4A93CA8" modified="2020-12-02" version="1">MRVLSASFKRSFCKGKAGFGSAFRAVSASSSCAGYATNAKDDLKRTVLYDFHVNQGAKMVPFCGWSMPVQYKDGVLNSHHHTRSHTSIFDVSHMLQFKLHGKDRVKCLESLVVADIEGLNEHQGMLSVFTNEQGGIRDDLIINKLPNELYVVSNAGCADKVTQLMKEKCAAVKEEMDVTLEILDYRSLIALQGPEAVQALQGGMKENLNDLYFMNGLTTDVFDIADVRVTRCGYTGEDGFELSVHSKDVEKLCETLLSSKVVDVRMAGLAPRDSLRLEAGLCLYGNDIDETTTPVEATLLWTIGKRRRANADFPGADIILKQISEKPSRKRVGIISSGPPARAGAAILDADGNEIGKVTSGCPSPCLPKQNIAMGYVQTKHAKNGSALQLQVHKKLVQATVTKMPFVPTTYYLPKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9I827</accession>
    <name>A0A7D9I827_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cytochrome c oxidase subunit IV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A005330</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion inner membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome c oxidase IV family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003695">
        <property type="protein sequence ID" value="CAB3999882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9I827"/>
    <dbReference type="OrthoDB" id="186013at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045277">
        <property type="term" value="C:respiratory chain complex IV"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006123">
        <property type="term" value="P:mitochondrial electron transport, cytochrome c to oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.442.10">
        <property type="entry name" value="Cytochrome c oxidase subunit IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004203">
        <property type="entry name" value="Cyt_c_oxidase_su4_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036639">
        <property type="entry name" value="Cyt_c_oxidase_su4_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10707:SF10">
        <property type="entry name" value="CYTOCHROME C OXIDASE SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10707">
        <property type="entry name" value="CYTOCHROME C OXIDASE SUBUNIT IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02936">
        <property type="entry name" value="COX4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81406">
        <property type="entry name" value="Mitochondrial cytochrome c oxidase subunit IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="4" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3999882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16494" checksum="471C7A074ACF4D16" modified="2020-12-02" version="1">MSASRFLLRTGLLSKFTRRAFATEVAISPVPKLEHYSPVEMERNDIAEALVEKAKKPWTELSKEDKIAIYRASFPYTIEAMAEEESHTKGIVGAVSIMLAISITFFLFLKKFVSAEAPRTINEEWAQATVEKLKKNRANPITGVSSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IBU5</accession>
    <name>A0A7D9IBU5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A026317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004567">
        <property type="protein sequence ID" value="CAB4003213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IBU5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4003213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15728" checksum="2D8D49D470F68554" modified="2020-12-02" version="1">MQQTISQLSQTNKHFEEEQSSLVTAIKIIQNDFNQQAISRKKSGEAREETGGGIDDNMWKKSKSKHQSKRPTSLLSNSGENSKRKTGDIKLKNQYETLTTKILNLQVHHLISNLTRNETISSKVQQKEPMFEDKKRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IE63</accession>
    <name>A0A7D9IE63_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein LOC113672371</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A017652</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005226">
        <property type="protein sequence ID" value="CAB4005526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IE63"/>
    <dbReference type="OrthoDB" id="5946254at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38564">
        <property type="entry name" value="SI:CH73-250A16.5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38564:SF2">
        <property type="entry name" value="WU:FC46H12 PRECURSOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="164" mass="18290" checksum="97361ADBE7DFE01E" modified="2020-12-02" version="1">MKSVVFMVVLHLVFFFIQTSECSLHASCKIDWSFGINCTTVNTKIVSQIKNWTSDENCKKYGGEKCLYTLISSTATEIKATHETPAHHYVDDLSFSFTTPSQGNCAVHGYSTSETWYAVLDDGTNYCNLHNLITGSSLDKAPGYKEVTDNSECTQYTSANCDKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IMY2</accession>
    <name>A0A7D9IMY2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073804</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006887">
        <property type="protein sequence ID" value="CAB4010740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IMY2"/>
    <dbReference type="OrthoDB" id="10068084at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4010740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="300" mass="34152" checksum="622D8243893A3A05" modified="2020-12-02" version="1">MDLEELQLQLEKVLCEVSKDILIKLAVFLKLDEVKYQGKSKLSITRLLEREIEEQVAQIEDENQCCVFLKKIQLIEITDKEAPPKEIGNKELEVLKQQLDNMEKDHQNQVEALKSKMEESELKATATSVSKPTTNDLKSVLRREFKINGQIGEPGQKDKLTFVSLVRQIESASSKGYSETEVIDGEKSATELYQQLTTIVQSPEESPQSFLIRALDLHQKVLFASKEAGVKITYDESLVQGLFLHSLETGLHHEAVRTKLRPFLQQPDITDELLIEQMNIIVSTETERQKKFGTASQARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IXB3</accession>
    <name>A0A7D9IXB3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A081069</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010312">
        <property type="protein sequence ID" value="CAB4019136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IXB3"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043927137" evidence="2">
        <location>
            <begin position="21"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4019136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="169" mass="18308" checksum="FE6143FCDF1C10A6" modified="2020-12-02" version="1" fragment="single">MKLETTVLLGLVVCFAVVNGVHHASPEYDGQYTPEPPTPKEEAGPVEEESGGHEAKPGEETGGEAGEENGGKGGEETGGEETGGEMAKKPPKEHPEGMMGGDTDAENHKGYCHWDIGVWMKPGVSRRCGCMRCMCKKGGVWDCNYHFAYCPYFYCGNLIYNPHTQLCCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J4I9</accession>
    <name>A0A7D9J4I9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089559</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011596">
        <property type="protein sequence ID" value="CAB4021747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J4I9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4021747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="177" mass="20325" checksum="5005FF0F6AF605A5" modified="2020-12-02" version="1" fragment="single">MTEESCSNTAAEEQSDLYRDLNDNCSSASTLDTFEPTVSAVQSEDRSMKASLKGSKNTRNTFVTAGYINHMHIGITKEQQHSGLTLPVVENEDQESWIKNETGKDKSWLKSQEAKEECRSCEVHVAKRKKDKEKKRELTQKCDNLQKKYDDSREKCDDLLRKRISDIQEMNTLQKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J5A7</accession>
    <name>A0A7D9J5A7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012658</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011835">
        <property type="protein sequence ID" value="CAB4022159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J5A7"/>
    <dbReference type="OrthoDB" id="5983390at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4022159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="47996" checksum="C2D01FE0394A91CF" modified="2020-12-02" version="1">MWKHANVLSVPKESILNSLNQLRPISLTDIIMRLFERSVFKTEIAHVTRHAIDSDQFASKEGHNSIMALIKCQHTWLRWLEGDAKYVRVLSFDFRKAFDSVPHDILCEKLKKLPINPYVINWLISFLEDRKQRVVVDGIETEYLNINRGVPQGTVLGPVLFSIMVNDIKTVNPINQLVKFADDMTLEVPGMKTEIHPKPKWTVYKHGLKITRMSLNMEKTYEMIVRRNIPTLLPDPFPFIKRRTWLKILGITLQDLPSKWDLHFDEMLKKASARMYIMRVCKYYGFQIKQLDMLFNTLIMPIITYGIELWEGAYFNKYISQIDKFINRAHRNGYISEKLNIKEISIKRDKKLWDKVIHNKDNVLQELLPDKLNRHLRPRGHEFELPLVRTERFKSSFVNRCLFNFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J7R0</accession>
    <name>A0A7D9J7R0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044009</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012641">
        <property type="protein sequence ID" value="CAB4023721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J7R0"/>
    <dbReference type="OrthoDB" id="10045556at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="156"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="318"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="212"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="318"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="347"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="41069" checksum="B1A82E30D885FCF9" modified="2020-12-02" version="1">MEVWSPANVKLQVALERVQRRATRWILKSKVGEMSYEDRLKTLNLLPLTYDREIRDLVLVYKCIFGHTDLNIEHFVSFIHHNRTRTQNPSLMLKSPYCRTSTFQGSFFKRIVKTWNNVGKIASPEKFASLTIFKSFLHVTYTALVNILVNRPPTTAQRTTYNAGRPRSVPKSSHRTKKVKSNKSESHLVNPVWRPFGKSLSQVRHEIHSGKKTYTTKSGSNLRQDQDCGISDKMPRLPSSAHSLEPWITEQDLEPWIGIPADPNCFVILPSGFHPDANCLPPLQSHEDSLLERPVQEIKKYVPPKILHNYNYMDKVPDAEDKVPGAEDKVPGAEDKVPAAEDLVPGGEDKVPGGEDKVSGGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J8B9</accession>
    <name>A0A7D9J8B9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083324</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012908">
        <property type="protein sequence ID" value="CAB4024229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J8B9"/>
    <dbReference type="OrthoDB" id="7382669at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="209" mass="23402" checksum="6378D16D3EBBC63A" modified="2020-12-02" version="1" fragment="single">MDKGLFTGVVMIDLRKAFDVVDHALLLRKLEICGLDFNTLKWFQSYLDGRSQKVCIDGMLSKPLLIESGVPQGSILGPALFLIFINDLPLALANNIGLYADDSTLYASGSTLPEVEEKLKPDLIDVSTWVKDNKMKLHQSKTKYSIICSCQKLANSLSQSLNLTFDGEPITQVKSERVLGVYIDNHLTWSTHIEKLHQKLLKRKAVLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JF32</accession>
    <name>A0A7D9JF32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015452">
        <property type="protein sequence ID" value="CAB4028390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JF32"/>
    <dbReference type="OrthoDB" id="5987910at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12948" checksum="6349AF73222F59CB" modified="2020-12-02" version="1" fragment="single">MSLVEGHQTTYKDVLSHTVLITALFNSEAIPKTRFARFLEKALFVLVLLGLSFIAILAVFARSGIDTWIQFSLYIVPLFSMICGHLIFTSDSFKEILSRRIEQNGTNETEFGIST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JFK9</accession>
    <name>A0A7D9JFK9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063779</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015651">
        <property type="protein sequence ID" value="CAB4028689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JFK9"/>
    <dbReference type="OrthoDB" id="10065625at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1186"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4028689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1186" mass="134843" checksum="7F1D3966A523C64A" modified="2020-12-02" version="1" fragment="single">MVLPSYKKNLFFFIKKSLVIVKNLLKKSRERYFSNLGQSWYLNPKRFWNLFKVKSQTSTIPQSVSWTVGNDTKVANNTTTIANMFNNYSSVSIAPQEDLQSNNATTTDINDTISSGSPTQSIDQLSVTESDVLRTLKSLDPDKALGPDEIPGRIPKVTANQIAPSLTRLFNKSLQIGVVPDEWKLANVVPVFKKGEKDRVENYRPVSLLSCFTPGKSCTTQLIQVIDTIGKLLDQGEQIDVVYLDMSKAFDKVNHTKMIDKLRSFRFNGGLLSWFQSYLRHRRQKVTVLGSTSTSTPVTSGLFLCILLAGDVAINPGPTITSNRISDLKSNPLNALYLNARSLKAFVSSDNDHLSKVCKITLLQNLVCSGTYDFICICETWLNETVLSSELLPGYSIFRRDRVEKIGGGVLVAVKSNIHATRRMDLERENVELVVVEFAMESNKTALLNPESSCIILIGDFNLPAIDWSLDQPTPATNGGQLEESFCDLVADSFLQQFISGSTHIDGNKLDLLLCNCPEIIKNVSSLPPEQLTFPTDHNIIEFEVQHSFRRANPITRTVFGYRRGNFDELRSYLTRKSCETISSDDINECWSQWKEWFLNAVQKYIPVKKVKDKNSPPWIDGEVRYHIRKKYAALKKYRKTRTDYRKRKLREISQTIKYLVRTKHRDYLLKIKVSFRSNPKLFWSYHKAIFHHRSTQNAVISHNGIVAKTPTEKAELFNSYFSSVFQPSTTNEATNSRNSRLPTDSQLSEITLDVEEVVNSLLNLNVSKASGPDGIPARLLKECSHQIAPSLCTLYNHSLRSGHIPSEWKSADVTPVHKKNSKEPAVNYRPISLLPIISKTLERCIYWRFYDHVVNLISPPQHGFLRNRSCVTQLLSAFHSIGQDLDKNTQTDVLYLDFAKAFDSVDHNILLDKLRWYGVTRSVLDWFADYLNGRTQRVVVDGVASAWSSVTSGVPQGSILGPVLLIVFINDLPDIIHNGTEIALFADDTKIHRHIISTRDCESLQHSLVKLDLWSMENNLFFNASKCKVLTVTRKKTPIIYEYTLGTEKLTRVDHEKDLGITTTTKLSWKLHINTIVAKANKMLGILKRTCTSITDRRASKWILMNREMPYKERLSSLNLLPLSYDREMKDLTFFYKALFGFINVNLSNYVSFVSHGRTRLSLSSEYILQNPLYKTTTFQSSYYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JGY8</accession>
    <name>A0A7D9JGY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058521</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016297">
        <property type="protein sequence ID" value="CAB4029620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JGY8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4029620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="14307" checksum="1EA38B89CA29A457" modified="2020-12-02" version="1">MKRMRTVADSDSATSESDVENSYNTDNEVETDSASESDSDNVDDTSSEPTALDLENVLTELYRLIGNNKKQSKWDKSRIKNIPILQPKSSRKRTKSSTKSAKNVDNTEMNDGSMDWLKLETKTKHNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JNQ2</accession>
    <name>A0A7D9JNQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Poly [ADP-ribose] polymerase 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A065186</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019383">
        <property type="protein sequence ID" value="CAB4033587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JNQ2"/>
    <dbReference type="OrthoDB" id="6133115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010629">
        <property type="term" value="P:negative regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052056">
        <property type="entry name" value="Mono-ARTD/PARP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012317">
        <property type="entry name" value="Poly(ADP-ribose)pol_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453">
        <property type="entry name" value="PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453:SF67">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00644">
        <property type="entry name" value="PARP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51059">
        <property type="entry name" value="PARP_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4033587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12859" checksum="24DC7C03AC7FF61A" modified="2020-12-02" version="1" fragment="single">EVSVPEYWEPQPRDSNGKELVSHLVCLDPNKPNHKEEYKKISDHFLQTANQKILQIERVQNPSLFKQYIIKKQSLDEKNGSNEKILFHGTKGDKIKEINESGLNRNYAGIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRC8</accession>
    <name>A0A7D9JRC8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beclin-1 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A079888</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the beclin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019936">
        <property type="protein sequence ID" value="CAB4034222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRC8"/>
    <dbReference type="OrthoDB" id="5980172at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000407">
        <property type="term" value="C:phagophore assembly site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034271">
        <property type="term" value="C:phosphatidylinositol 3-kinase complex, class III, type I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034272">
        <property type="term" value="C:phosphatidylinositol 3-kinase complex, class III, type II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043548">
        <property type="term" value="F:phosphatidylinositol 3-kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030674">
        <property type="term" value="F:protein-macromolecule adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000045">
        <property type="term" value="P:autophagosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006995">
        <property type="term" value="P:cellular response to nitrogen starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045324">
        <property type="term" value="P:late endosome to vacuole transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000423">
        <property type="term" value="P:mitophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.418.40:FF:000001">
        <property type="entry name" value="beclin-1 isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.40">
        <property type="entry name" value="Autophagy protein 6/Beclin 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007243">
        <property type="entry name" value="Atg6/Beclin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038274">
        <property type="entry name" value="Atg6/Beclin_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040455">
        <property type="entry name" value="Atg6_BARA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12768">
        <property type="entry name" value="BECLIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12768:SF4">
        <property type="entry name" value="BECLIN-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04111">
        <property type="entry name" value="APG6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4034222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="190" mass="22315" checksum="DDC2CF6BE536C853" modified="2020-12-02" version="1">MQLDKLKKTNVFNSTFNIWYKGHFGTINNFRLGRLPSVPVDWSEINAAWGQTVLLLHALARKMNLKFKRYRLVPFGNHSYLESLEDKSKELPLYASGGFRFFWDTKFDHAMVAFLDCLQEFKEEVEKVDKRFCLPYRMENGKIYDSSGTGGSYSIKIQFNSEEHWTKALKFMLTNLKWGLAWLNAQFSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JVB6</accession>
    <name>A0A7D9JVB6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080414</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022652">
        <property type="protein sequence ID" value="CAB4037027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JVB6"/>
    <dbReference type="OrthoDB" id="10037236at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="191"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="661"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4037027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="661" mass="75149" checksum="B55AEB79255E605A" modified="2020-12-02" version="1" fragment="single">MAAMYELPKRLIYFLVLLIVCVSFYPAKDGYVDKRSHPWNIGISVALNLTKIEIVDAPMRPTKTSIAKSAVPFDVKLVRSIKLVTQFAAVNVLIVCNDIDLNPGPANETLVCTACLKPIGKNQPRAECLRCKSVNHLKCLESSFDINRTCKQCFVGMNGNINNDNDDYCSQVTTEMNDIFRGSGVKIVHQNIRSLLPKIDELRLLISSVQSKIDLFTLSETWLTDDVADSEVSIEGYTFHRRDRGSKEKGGGLGIYVRNDLSVSRRFDLEQSNIESLWVEVNFPHSRGFLVGTFYQPPESSRYYNDAFMDHFEDSAEKAISNNKEVILLGDFNCNLAKGSLNGNGKRLTSTLRSLGFCQLIKEVTRITAWSATLLDLIATNNERFISKSGVLNACLSDHDLVYCIRKMNSSRQTENVELYSHIQTNVDSFLYSHPEALVLITGDFNFRSTGLNANHLKRIAGLTQIVKVATRADVTLDWCLTNSKVDNIYESIQLPPIGTSDHYTILMKAQPSPSKPDNSHIWKRDLRDSRIRPFGRYITTFDWSPILDIHDCDTKYEKFNDTMTVMIEKFFPLERIKVRKCDKPWMTSSIKSAIGRRQKALHESGKNSDIYKYWRNRVQSCIKVARKIYYMRSVEKLKNSNPARWWKEVKAIGGLSSKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JWS1</accession>
    <name>A0A7D9JWS1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A054219</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023470">
        <property type="protein sequence ID" value="CAB4037793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JWS1"/>
    <dbReference type="OrthoDB" id="6783145at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="197" mass="23018" checksum="B417F92462D132D7" modified="2020-12-02" version="1" fragment="single">MVDAAYLAKQHSEITEYDIAYIRKWGGYRRVTHIIDCEGYSTPRSKTFLREVSIWCRQTGAILTYHIYMPDKRLFYEKHASVRYQIDNIHRLPITRCSDGRDIGMPGKYYPYDAVIANLRQIFMHADLIGYKGGTIERDLLSCLGYTGMNIELLECPCYEELLTKYGVTSHTCGRHLTGYKYHCSMHEVELFGRYLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K1V8</accession>
    <name>A0A7D9K1V8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A089072</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025098">
        <property type="protein sequence ID" value="CAB4039228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K1V8"/>
    <dbReference type="OrthoDB" id="5577209at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052586">
        <property type="entry name" value="ASCC2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21494:SF0">
        <property type="entry name" value="ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21494">
        <property type="entry name" value="ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="262" mass="31121" checksum="3E63C7443DDA5032" modified="2020-12-02" version="1" fragment="single">MRLLCQSHSRFWNHVIFNKSINICLDSFLKSSPRSYDVWKFLPDKILNLQKEIHRNIFMVYLRIATHKESKKDFFTPETFGEILYENFLFDIPKIMDLCSLYGGENCKNNSLLTKMLENVFKRQPKYIDDLRETIPSICETLDKIKDELGVSREDSNPVKVGEDRHSELPLAILNDFIVYLHDITQTLISFLHILPFVCQYFFKDGFVQRIAGFYEEMMTVFDQRYRRMKTERTFLNRVKFGLIKICRFIIDAHCLVPLMNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KCV7</accession>
    <name>A0A7D9KCV7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retinoblastoma 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A033389</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032454">
        <property type="protein sequence ID" value="CAB4043467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KCV7"/>
    <dbReference type="OrthoDB" id="844594at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000134">
        <property type="term" value="P:negative regulation of G1/S transition of mitotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002720">
        <property type="entry name" value="RB_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028309">
        <property type="entry name" value="RB_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13742:SF17">
        <property type="entry name" value="RE32990P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13742">
        <property type="entry name" value="RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01858">
        <property type="entry name" value="RB_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retinoblastoma-associated protein A-box" evidence="1">
        <location>
            <begin position="145"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="194" mass="22325" checksum="8D3640D7B78EED4B" modified="2020-12-02" version="1" fragment="single">MVTQHTKDMVNPEFIDAVVKYTSQKESKSATNVSCILGYLCDNFDGLPVEAKQIREHHWKPYVEKLFNRKILKGAEKSFTGLLELNNFEANGKNVSRDYEEYVLLSGDFDERVFLSENAEVEIGTPLKMNQLEVDVTSRRNFEVWHLQSLLARLKSVPSEGLVAIFKECKANLQEDIEKRVNELGEQFSVKYTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KJG9</accession>
    <name>A0A7D9KJG9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A046218</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043543">
        <property type="protein sequence ID" value="CAB4045939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KJG9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="135" mass="15073" checksum="EBE7C378C535FDBA" modified="2020-12-02" version="1" fragment="single">SSNTTTTINRSDSDASEGKANEQEMCSHKQNEGDYIINCKDCSKLSVEVAEIKLDLALLFLKVNTVEAPATCECNRLRNENQLLKQEIKLFKETLHGMELSKSPINIAIDNMNNQPTITDNDSVILIDIEESEVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KZ70</accession>
    <name>A0A7D9KZ70_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Syntaxin-binding 5-like, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A076880</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WD repeat L(2)GL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011887">
        <property type="protein sequence ID" value="CAB4022256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KZ70"/>
    <dbReference type="OrthoDB" id="19944at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031201">
        <property type="term" value="C:SNARE complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045159">
        <property type="term" value="F:myosin II binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019905">
        <property type="term" value="F:syntaxin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006893">
        <property type="term" value="P:Golgi to plasma membrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013577">
        <property type="entry name" value="LLGL2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10241">
        <property type="entry name" value="LETHAL 2 GIANT LARVAE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10241:SF25">
        <property type="entry name" value="TOMOSYN, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08366">
        <property type="entry name" value="LLGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lethal giant larvae homologue 2" evidence="3">
        <location>
            <begin position="149"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4022256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="237" mass="26421" checksum="D4B5CD59CC46153D" modified="2020-12-02" version="1" fragment="single">ISSVSISFQSKWIYLGTKAGNVHVVNIESFQLSGYTIHWNKAIERSQKEHPGPLYEICENPQDANKLLLGYETGLIVLWDLKSKVVDQRFQSPQKSLRSVAWYSDGKQFVSSHQDGSLSVWNIKNPQRPLEMFTPHSNGRSRGDSTKATACSPITKVCLVRDSCFLFSGGLHYGSKCKGLTIMEGKTKKLLHTKPVVDFVSITDTPWESDEVDAVGIIVLLQTELIVYDLSNSAVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KZX6</accession>
    <name>A0A7D9KZX6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A086370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012366">
        <property type="protein sequence ID" value="CAB4023198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KZX6"/>
    <dbReference type="OrthoDB" id="5948582at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4023198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="131" mass="14107" checksum="F2C3407B254F83E8" modified="2020-12-02" version="1">MPGLYPLNGKVHNLKPGEDMKMDVENEGVPSHASEVIVYAKIRTGWVQGKDEDGELVLSVTGPNGKIERRLFCHVYEQSAWAYNSENISLPVEPGACATGSKGKEITATLEVGAQGGGIIASIQMVGYRVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2N8</accession>
    <name>A0A7D9L2N8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TNF receptor-associated factor 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A010521</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012696">
        <property type="protein sequence ID" value="CAB4023811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2N8"/>
    <dbReference type="OrthoDB" id="5972186at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031663">
        <property type="term" value="P:lipopolysaccharide-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000179">
        <property type="entry name" value="TNF receptor-associated factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018957">
        <property type="entry name" value="Znf_C3HC4_RING-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF152">
        <property type="entry name" value="TNF RECEPTOR-ASSOCIATED FACTOR 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00097">
        <property type="entry name" value="zf-C3HC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00504">
        <property type="entry name" value="Ubox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="46"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="476" mass="54121" checksum="AF2C9EA290998D1E" modified="2020-12-02" version="1" fragment="single">MAYRNLANDIADMVNEQNEAYVAVAGSSNLPENPSSVPDNSGIRPNSSNSHGNNQANNEANSNNAEDVERLDGHDEIFDPAVSADYECPICMMVLRNPVQTTCGHRFCRGCITRHVATNGRTCPIDNQELGENELYPDNFAKREINQFPVKCRTVKNNKECPWTGPLLNIERHLEFREVDIRQKRCCISHQYCAIQFYRDGSSMICCLSSCYYSNYWLWVMHTPSQSSSESSSRLPLSLDSCGKFVHPTHWHILSHWLFAFYKIGEGALIIGVVSLFHITACVHKRSSYFALENMAKIKDNNTTSVSELFITILTFRTNDQRFIRLQLKSLGQSRLKERKGKAYSTRNRLDPCFLHNKIHTRTPWKATRQSKAKQFEGRNGFNRKAGHVNRIKNSLISSTTIEVYLLNSNRVNMKIFKLLNNNIVANQVKAFPKISKETSYRTVTDIYLTQPEFCGKVPLSQNHRHLLRGGGGEGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L402</accession>
    <name>A0A7D9L402_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A014393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013754">
        <property type="protein sequence ID" value="CAB4025682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L402"/>
    <dbReference type="OrthoDB" id="10062362at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33053">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4025682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="656" mass="74029" checksum="F3C81EE959E21E89" modified="2020-12-02" version="1">MKPSRAQYRRKWVAAARTLQNTNHHDPNMDNHPTVDQHPNVDFDQLIELPLNPEFPDNSDPDNSDPEIDEEQCEPSRKRLCGAANGSLHDEGDISVAGNECSSDSEDDLNDESLHAELASWANEFKHNAMDSLLALLKNSGHPNLPNSARTLLGTTRSISVQVKSGIDYVYLPLAAELLKHFKRHPPNIVNHIDSLEISLNVDGLPLFKSCNKTLWPVLCAIVNVKPVVVFPVVLAYGKSKPKDLEFLEDVIRDLGDILENGLQDGNRVLPVSLRCVVCDAPARALVKGTKLCSGYFGCDKCAQKGMWVGRVVYPLIRDIDLRSDYSFREQVNEAHHLSVSPFCTLPIDMIKKFPIDYMHQLCLGVTRKLILIWIRGSREVKLSAGQVEEISNRLTGLKPFVPSFFARKPRGMAEIDRWKATEYRQFLVYTGQIVLSGILRPDLYDHFLCLSVASSILICPRLALLHRPYAKQLMEYFVEQGKVLYGNEFQVYNVHSMIHLADEVQEYGSLDACSAFPFENYMQKLKRLVRSGKNPIAQIAKRLSESYGAIPQSREAVISLKKPDNCFILSDSSCCEVLDKSNHPDDGEDKYLCRVYERTEALFDRPCDSRLIRVHKGNPRWTTMKVVSAQSLNKNAMKVDLGPNKIVFMTILHSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LI47</accession>
    <name>A0A7D9LI47_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A026278</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019862">
        <property type="protein sequence ID" value="CAB4034148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LI47"/>
    <dbReference type="OrthoDB" id="5972980at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00980">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4034148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="736" mass="84974" checksum="1A986977B6608A04" modified="2020-12-02" version="1">MPNCAFYNCFHSRRYKNVSLFQIPVPRNSDSEFTFHRKEEARNGWINAILRTRQLDANLKTQIENNNIHICESHFKEEYIENFSKRKSLQTGSIPTENLPVKSFDHLSTSFTSAPRKEPAPRHVSQETTIIYASLDKFDAYLKKAGRYPYFQGWNWFKEGNNTVIEFKESEYLIAKISVRVESTLNYTVLVYGWALPNDHPIYVSNERSLQCCNFKTLCNEIVSLGICKGTLFPLKSSKSVKTQLVPLLPNDSSPQYRTVEYCRALSCRVLVSSILSDSKQLQCESCSRESNSNVGNFNVASVKCKTPLSCLSKEQLIATVKDTRVNLKEAKLKCAQLERRVQRMENEIKHHGIRIETGLEKELTSIITNTSLEATPHMKLVWEQQKKALNQQSNFGNRWHPHFIRFCLSIYSKSPIVYQELRDSGTMQLPSSRTLRSYRNNFKPGAGYLPENIKSLISRTKGFLDKDRWIVVMFDEMKIKCNLVFDKHSGRLIGFVDLGDPDINYSTFDKIEPATHVLAFYVRGINTKLQFMLGYFFTRDVVSYQLMPLFWRGVAILQLKENLNVICAVSDGASPNRKFYQLHIYIGEKLNNQKVVYKTKNLFAPGKWIWFFADAPHLLKTARNCLLNSGSGLKSRCMWNNDQFLLWNYISDLYYSDLELGLHQLPKLTIEHIMLTSYSKMRVNLAAQGKSQMGRKQQSILEITDIFLLQFVLMLSKQATLRANVIGQSLFQNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LI88</accession>
    <name>A0A7D9LI88_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">EGF-like repeat and discoidin I-like domain-containing 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A052409</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017273">
        <property type="protein sequence ID" value="CAB4030983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LI88"/>
    <dbReference type="OrthoDB" id="10046852at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24543">
        <property type="entry name" value="MULTICOPPER OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="1">
        <location>
            <begin position="74"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="145" mass="15953" checksum="FE086AC752E2F147" modified="2020-12-02" version="1" fragment="single">VFLRDAEANTTVNYTFPLILVVNSIRVTPLSWNGTKPAMRLEFMGCYEDTDVCDNNNGTCNDLFTTYNFFNCTCADGYSGRYCETECLDARPLGMSGGQIKDDQITASSTYNIQGVAPAGRLNASAVRRSGGWVAAENDGKQWFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LN59</accession>
    <name>A0A7D9LN59_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Eukaryotic translation initiation factor 4E-binding 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A013886</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eIF4E-binding protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021645">
        <property type="protein sequence ID" value="CAB4036045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LN59"/>
    <dbReference type="OrthoDB" id="19729at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008190">
        <property type="term" value="F:eukaryotic initiation factor 4E binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045947">
        <property type="term" value="P:negative regulation of translational initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008606">
        <property type="entry name" value="EIF4EBP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12669">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12669:SF12">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05456">
        <property type="entry name" value="eIF_4EBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-0652">Protein synthesis inhibitor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0810">Translation regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="47"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4036045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="76" mass="8509" checksum="35E12632CD9CCA73" modified="2020-12-02" version="1">MFPTGTRIIYERKFLMELRNSPLARTPPSNLPVIPGITCDSKVKPQETIPEEHSPGVEEAKATSGVEDHTQFQMDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LP60</accession>
    <name>A0A7D9LP60_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056818</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022716">
        <property type="protein sequence ID" value="CAB4037086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LP60"/>
    <dbReference type="OrthoDB" id="6064907at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4037086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="253" mass="29598" checksum="A24B94C588AD64BF" modified="2020-12-02" version="1">MPRERLTTERVLAEFERVIQSNRHFHLNDSVDVNVVHVEMPHGGRKTKRAEINLEKHLMKKRSIIRIRNNDQLCLARALVVAKAKIDNDPKYTSIVDHRRAMQTRLARELRQKAAVPLGPCGLDEVKQFQTYLSDYQINIVSTDHQNALIYVGPNQEKKIYLYLYDNHYNVITKMPGFFERSYYCHICKKAYDHREDNLCPNACPYCRFPDCPVESWVHCNDCNRMFKSQACFDRHKQSSGKSICATMVECSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LT55</accession>
    <name>A0A7D9LT55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A069645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024880">
        <property type="protein sequence ID" value="CAB4039038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LT55"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="114"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="162"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="26595" checksum="0BA95FF6222BCE06" modified="2020-12-02" version="1" fragment="single">MASGVSSNVVRCKLECRPEVSVCDHRVGVVILPEGAVDVQDAVQGNVCVEGSEHHLVAEGNCFHRGWKADKFSDRWKAQETVELTEHPVPGGGARATEDESALGLESGALSEENVGSGVGLKGRGNSANQAHLSDSSIQRTWKFIQNQADLRVTSLEQPINDVSQEQDSRLSGVVSTEATPRLSRSSKDFASKGGATTPPLIGGHKVNLQRVLPTVRGLLREQLLPVVGMAATVRRTESDFVASNKVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LX82</accession>
    <name>A0A7D9LX82_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flavin-containing monooxygenase</fullName>
            <ecNumber evidence="4">1.-.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A014780</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the FMO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.-.-.-" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020025995">
        <property type="protein sequence ID" value="CAB4039879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LX82"/>
    <dbReference type="OrthoDB" id="9700078at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004499">
        <property type="term" value="F:N,N-dimethylaniline monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020946">
        <property type="entry name" value="Flavin_mOase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00743">
        <property type="entry name" value="FMO-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0274">FAD</keyword>
    <keyword evidence="1 4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4 5" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4039879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="98" mass="11124" checksum="D19F8ABC78346960" modified="2020-12-02" version="1">MNELGEMIGAKPNLWSIFKEDPKLAYQVFFGTAIPTQYRLQGPNTWKDARKHIMSFQEQYLCPLSTRKCAPSAESNSHSVLVFIFVIVFAIVAIMLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M6R8</accession>
    <name>A0A7D9M6R8_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">QRICH1-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044221</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032681">
        <property type="protein sequence ID" value="CAB4043582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M6R8"/>
    <dbReference type="OrthoDB" id="5988622at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052787">
        <property type="entry name" value="MAVS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057926">
        <property type="entry name" value="QRICH1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21446:SF13">
        <property type="entry name" value="DUF3504 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25561">
        <property type="entry name" value="QRICH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="QRICH1-like" evidence="1">
        <location>
            <begin position="34"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="171" mass="20261" checksum="E4AB0639AFA7BC06" modified="2020-12-02" version="1" fragment="single">MASSYKKRRFRDPQSVERSIDNVRNAIPQTTRYKNRWGVRIFEDWQSGRENKAVMCESNPFSLDLQNLQNLETELCSMTARTLNFWLIKFVQEVCDKDGKPWPYPGRTVYQIICSLKRHLDKNGRAEANMLNANNHWSTFRRVLDSEMKATHREGESRTRREKEAITDDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MB10</accession>
    <name>A0A7D9MB10_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon ty3-i gap-pol poly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A012514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020038424">
        <property type="protein sequence ID" value="CAB4045259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MB10"/>
    <dbReference type="OrthoDB" id="3341596at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="105"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="123"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="150" mass="16986" checksum="3AD8C9B11ACBAEB6" modified="2020-12-02" version="1" fragment="single">MEKTFTLSQVLDYGRALARTDQQTKEIIKKDISDGNEEYTNQLQQDHRRPRTTSKYSSSSSKKRFKCGLGFPHKDNQKCPAVGKECYKCHKRGHFARVCKTTRGGTSSFQRVNKVDERHSLTHKSTSNSSSDSDSGSEQYVHSSTSTTKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FGL0</accession>
    <name>A0A6S7FGL0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">SAFB-like transcription modulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A042598</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000129">
        <property type="protein sequence ID" value="CAB3978614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FGL0"/>
    <dbReference type="OrthoDB" id="5975115at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050684">
        <property type="term" value="P:regulation of mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.720.30">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051738">
        <property type="entry name" value="SAF_Modulators"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003034">
        <property type="entry name" value="SAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036361">
        <property type="entry name" value="SAP_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15683:SF8">
        <property type="entry name" value="SCAFFOLD ATTACHMENT FACTOR B, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15683">
        <property type="entry name" value="SCAFFOLD ATTACHMENT FACTOR B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02037">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00513">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68906">
        <property type="entry name" value="SAP domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50800">
        <property type="entry name" value="SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="172"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="118"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="186"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="206"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB3978614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="31014" checksum="9EF6CC837892F530" modified="2020-12-02" version="1">MANVNGKKLNQLRVVNLRSELDKRSLDKSGLKAALVERLEQSLLDETVKLSDSTNVQDEVSETDVKSKSNKNQTCSCELMAADLEGVKLDIVILQQQIKASASYNLNTIKDLNSEVEITRLQQELAGEKKASEKLKTNIESLEDRATKAEAERDSLRLALTILMQDKMTKVSENIDEQSQNPWRNVESKSKYPTKQDESKKHDGQSAKQSDGNSIMDNERLPQINTRYYKSRTRVTKKVPKCRAHSQKHNVHELTLKKRVNPRRPHVMWRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FXV6</accession>
    <name>A0A6S7FXV6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A037803</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000739">
        <property type="protein sequence ID" value="CAB3984438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FXV6"/>
    <dbReference type="OrthoDB" id="851134at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF467">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24620" checksum="57D356ABABB5C2F0" modified="2020-12-02" version="1">MIGSLIYAMTCTRPDLSWIVSKLSQTLSNPRTGDLIAAKHVLRYLKGTVDYGLCFKKSDADLQLTAYSDSDWASCLEDRRSTTGYCCTLTEGGPLISWKSRKQPTLAISTCEAEYVALANTAQECLYLTQLLNGMYKKVHKSMKVSVDNQGAIALSKNPVNRQRSKHIDIKYHFGREMYVKGMIDIVYCPTQDMVADILTKPPTKCKLDNFKSIVFGCCN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G205</accession>
    <name>A0A6S7G205_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A031436</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000546">
        <property type="protein sequence ID" value="CAB3982849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G205"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="80"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="16460" checksum="718A0ABCEC78BF0B" modified="2020-12-02" version="1">MIGSENPPLNENGKRRGYIKVMKELCDEQGYEYLSLSCQNLRDQAARLEKTMGDTIVINSGNGIKVNVETRTTEGSLNYGSSSGSQHKSSSGSQHDIQFDDIIDNAIEDQYKDTMRSLRSTSANSQEGITINISFPEHEITEKPAIING</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G2S6</accession>
    <name>A0A6S7G2S6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000761">
        <property type="protein sequence ID" value="CAB3984613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G2S6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="11490" checksum="6A3903346B6448FD" modified="2020-12-02" version="1">MLKSQEFISFFAELGSSLQVPDHLSEGLERNAKNLILDLDDQTCHGWKEDGKVIWDSVAYPDDVSEMLIDREEESDEFDFERNSYIGDDIDDDMEDDEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G6Y3</accession>
    <name>A0A6S7G6Y3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033677</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001219">
        <property type="protein sequence ID" value="CAB3987708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G6Y3"/>
    <dbReference type="OrthoDB" id="3261222at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="160" mass="18448" checksum="36EE64EB085F7545" modified="2020-12-02" version="1">MYDEWLKNMDEGKITGLVSLDIKKAFDSINHHILMLKMKDQFGIRENELNWFTSSLTDRQQVCCVNDHISSWKSIESGVPQGSILGPLMFLSYINDLPQYLKFTTPGLYADDTQIFASSDNYDELVELLNSDLKNISRWLSDNKLQHHTTKTKLMLIGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GG90</accession>
    <name>A0A6S7GG90_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001244">
        <property type="protein sequence ID" value="CAB3987856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GG90"/>
    <dbReference type="OrthoDB" id="7484295at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1820">
        <property type="entry name" value="L1 transposable element, RRM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="214" mass="24389" checksum="7DECE0F4648E6304" modified="2020-12-02" version="1">MDKKLAKLPRVCNDKPVNLSDSEAEKSLNFLGNQVDDMSRFREFAEKEFKQLNKRLEGVAKKSDKLSDAIDDIQKYSYQYNVKLLGVPECNERETAATSTELCVRLFNGMGVEVKAHDIDIAHRVPHRNAFATGPKPIVCKFVRRVVKDEVIRQRKEASKVKSEALGLSSDASLCNVLVMEHLTPKAQNLLAEAKRFSKQHNFKFCWVKTLKYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GJH5</accession>
    <name>A0A6S7GJH5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A041198</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002287">
        <property type="protein sequence ID" value="CAB3993574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GJH5"/>
    <dbReference type="OrthoDB" id="5865523at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="100"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="172"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="103"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="154"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3993574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="310" mass="35207" checksum="E76A9FE9E5BFF61D" modified="2020-12-02" version="1">MSRGSAAEAQVVSGDQTTETADDETPNKEELEIAWRIASRKTSKSKFTKIRNRIISLLEDASASCLLKADARVTQLDQWLDKLFDEALEVKSAVARYLDNHSSSRNSSVRSSKKSATVKSKISKSTDKQQSARISRRREERKSIRKKTAASGKSKPDNYRDTVDWVESQQNIRATTNERSQLNSNSDSVEKEIRQLEEEIKTIRAARQAVSDLQMPVMTNRQTNVELSRSTRADEGNSNKLSNHLERIHLPTFSGDKTKFEEWKARFTVCVDKTDASTMHKLIRLRSLLRGEAEELLEDLGWESSDYYSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLG0</accession>
    <name>A0A6S7GLG0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A014190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001613">
        <property type="protein sequence ID" value="CAB3990166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLG0"/>
    <dbReference type="OrthoDB" id="2441813at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3990166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="124" mass="14299" checksum="78C1D445E1DE096A" modified="2020-12-02" version="1">MKESNVKQTVEPLKSNTSLLGSSKERLVATVQKQRIVCKELEGRIAELEKEIERNSIPIDETMEKDILAILADGGDEVNPHVNVFWKQQRKLLSMPKFGRRYHPRIIRFCLSVHAKSPAAYRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GNE6</accession>
    <name>A0A6S7GNE6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A081868</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001778">
        <property type="protein sequence ID" value="CAB3991036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GNE6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3991036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="132" mass="14784" checksum="2B41E8C498E74DD6" modified="2020-12-02" version="1">MVVRIKSLFIISYSLVDTLFPPWDTTEMMQPMDAIPGIPEEVPEEDNLAVKAGDNVKSLQGLTAEVAHENLALLNAKVDQLIETVKQLKLTSSTHADVNQFPRQSNLPQFQNSNEWKDIKNIIDLTEAVPEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GPA9</accession>
    <name>A0A6S7GPA9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A064032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002274">
        <property type="protein sequence ID" value="CAB3993513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GPA9"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3993513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1016" mass="122456" checksum="BFED3546DEC37B4E" modified="2020-12-02" version="1">MGRGFNSRLLYRVVFFSFCLIFACFYHGGGSEYDMRDDKTEPNKLKDEFEGKPFNVDVSLEQDERVSNLAENDKQIDGRKARKKTDLSKMNYFRETAKRETFASNTTRHLRNRREIDAILESPTECANFTFTIKYEDNYRVWNNFSMMYRSRMYRYNEYRVTDDGLQVCNSSDTLIKQRWRDLIAREKEVLAFKYLKYGDQYNVLQNFSLFYNNNTYDYREYQFGSEALEICDSNDSRTRTIWRTRNSWEKINRYKCHGSVKKIYARYYSVTKQFTVYLAPSTQYFTRNDYGLQDGRLTLCEEKLRPTSTEYTKEDLLMCNDSIINIKYDDEYKVRTDFSILYKNKVYDYTEYRVLNDAIKICNSTDNYVRNIWELRNDWVKATMHLKSCNKPNRSFSLPREYYTVNKQFTLYFVAMSQYFTRNGYGVKDGKLHICQEKFKPVSTEYTQEDLLMCNDSIINIKYDDEYKVRNDFSILYKNKVHDYTEYRVLNDAIKICNSTDKYVQNIWELRNDWVKATMHLKSCNKTNRSFSLPRQYYTVNKQFTLYFVATSQYFTRNGYGVEDGKPYICQEKLRPASTEYTQEDLLMCNDSIINIKYDEEYKVRTDFSILYKNKVYNYTEYRVLNDSIKICNSTDNYVGNIWKVRNKWVKETMHQKTCNKPIRTTWLYRKYYTVNKQFTVYSGGDGGYLTRNDYWVEDGRLTICKENYRPISSEYTQEDLLMCNDSIINIKYDDEYKVRTDFSILYKNKVYNYTEYRVLNDSIRICNSTDNYVGNIWKVRNKWVKKTMHQKTCNKPIRTTWLYRKYYTVNKQFTVYSGGDGGYLTRNDYWVEDGRLTICKENYRPISSEYTQEDLLMCNDSIINIKYDDEYKVRTDFSILYKNKVYNYTEYRVLNDSIRICNSTDNYVGNIWKVRNKWVKKTIHLKTCNEPIRTFWPYQEYYTVNKQFTVYLAPTSQYLTRNDYGVEDAQLYICDEKLRTMSTEYTQEDILMCNDSIISIKYDEEYKVRTDFST</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQJ6</accession>
    <name>A0A6S7GQJ6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A033374</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001992">
        <property type="protein sequence ID" value="CAB3992162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQJ6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3992162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="56" mass="6167" checksum="2EE69919258FD536" modified="2020-12-02" version="1">MTVSAPVKDNYDSGVGNIEKWTESKRMTLNLAKTWEMIVSGKSANPPPMAGIERKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GTP9</accession>
    <name>A0A6S7GTP9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A010684</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CACRXK020001255">
        <property type="protein sequence ID" value="CAB3987941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5871067at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.960.10">
        <property type="entry name" value="VSR Endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004868">
        <property type="entry name" value="DNA-dir_DNA_pol_B_mt/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568">
        <property type="entry name" value="DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33568:SF3">
        <property type="entry name" value="DNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03175">
        <property type="entry name" value="DNA_pol_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB3987941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1466" mass="170122" checksum="F57E79B16513DEEE" modified="2020-12-02" version="1">MPRERLTTERVLAEFERVIQSNRHFHLNESVDVNIVHVEMPHGGKHTKRAEINLEKHLMKKRSIIRIRNNDQLCLARALVVAKAKIDNDPQYTSIVDHRRAMQVRLARELHQNAAVPLGPCGLDEVKQFQTYLSSYQINIVSKDHQNALIYTGPDQEKRIYLYLHDNHYDVITKMPGFFERSYYCHTCKKAYDHREDHLCPNACQCCRFPDCPIESWVHCSDCNRMFKSQACFDRHKQSSGKSICATMIKCPDCHRLIKRGPRDPEKHHCGMTKCLICKEYTRPGDHRCYMQPVEKRNEGLSDSDDSSEHPEDDVTEGGYDQMLFFDFECRQENGNHEPNLCVIQNEAGDEWYLRENGVKYDVIVRGAKVLSLSVDMFKIKFIDSLNFIPMRLADFPKTFGIDELAKGYFPHLFNKKENENYVGPIPPTPYYNPNGMSPAAKEKFLDWHRNLKDNEYVFNFKEEILAYCRSDVDILRRCCLEFRELFRNVTDIDPFEKCLTIASACNLVYRTNYLEENTIAIIPPRGYCPENVQSLLAQKWLSYTAERNEIDIQHNRNGGEKRVGRYLLDGYHEETHTAYEVHGCFWHGCINCYTRDTMNPVKGKTMHDLRQTTAEKTEYLKNQGYNVVEVWECGIKRELADDEDMRHYFDNYDGVDSLEPRDALYGGRTNASRLYHECEDDEKIRYVDFTSLYPFFSRIDEINVLDAGLFVRSSEPEKTFYMEWLMKQDAYTLHRPMRRHFKRNRVIVGGIDQQWQMDLADMQSMQKFNDGYRYLLVCIDVFSKYAWVVPLKNKTGPTLVEAFKVILASGRKPEKIMTDQGYPGKFNSWIVGDTSGVETTILVPKSLFKQVDVFLKGKQVTQATGTYAYRAYLETLLNYGPSAKDSQLTAALYYKDTAGKMDVADPTVAGGNGNAGLRARYVFSKASGTVEMTGPIFSNIFMSERLLLSYVDLKVILNRSSDEFCLMASEDDADFRVKLTDAYLKIRKVKINPSISVAHEIALKKGPAIYPIRRVECKSFIVPAGNPSLRKDNLFNGLVPKTVVFGMVESDAFNGALKKNPYNFQHFSVSSIGITVNGEEMPFKPLQLSYGTAPKYIEAFTTLFSATSCLRRSRDILTDSKRVTAKSFMNLFARYHSIKRRQDTARTDFCVYINSVIIRHGLLLIKICIRCTTDAAHRTSYVVIFSSIDTNKDLSGEPNGEELSVYEKYHNQNIKRNQLHMINSGLDKYRSEDTDATCYDGTFKHPLTGNARRYVLGDRFHNAANPQKSPLCDYHDINLLRQSNMIKTRYQECENNRKNTRRPRSSCIQEFGTHFFYNYLMDYFQNEDIVKRQRQLDKYRSEDTDATCYDGTFKHPLTGNARRYVLGDRFHNAANPQKSPLCDYHDINLLRQSNMIKTRYQECENNRKNTRRPRSSCIQEFGTHFFYNYLMDYFQNEDIVKRQRQLVSANLKPNQELKRDNVLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GWV8</accession>
    <name>A0A6S7GWV8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Pre-mRNA-processing-splicing factor 8, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A045449</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002478">
        <property type="protein sequence ID" value="CAB3994506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="1931567at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071013">
        <property type="term" value="C:catalytic step 2 spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000974">
        <property type="term" value="C:Prp19 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005682">
        <property type="term" value="C:U5 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097157">
        <property type="term" value="F:pre-mRNA intronic binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030619">
        <property type="term" value="F:U1 snRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030620">
        <property type="term" value="F:U2 snRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030623">
        <property type="term" value="F:U5 snRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017070">
        <property type="term" value="F:U6 snRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045292">
        <property type="term" value="P:mRNA cis splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000393">
        <property type="term" value="P:spliceosomal conformational changes to generate catalytic conformation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000244">
        <property type="term" value="P:spliceosomal tri-snRNP complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd08056">
        <property type="entry name" value="MPN_PRP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd13838">
        <property type="entry name" value="RNase_H_like_Prp8_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.80.40:FF:000001">
        <property type="entry name" value="Pre-mRNA-processing-splicing factor 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.230:FF:000001">
        <property type="entry name" value="Pre-mRNA-processing-splicing factor 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.43.40:FF:000001">
        <property type="entry name" value="Pre-mRNA-processing-splicing factor 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.140.10:FF:000002">
        <property type="entry name" value="Pre-mRNA-processing-splicing factor 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.1570.40:FF:000001">
        <property type="entry name" value="Pre-mRNA-processing-splicing factor 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.80.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1570.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.40">
        <property type="entry name" value="Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000555">
        <property type="entry name" value="JAMM/MPN+_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037518">
        <property type="entry name" value="MPN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012592">
        <property type="entry name" value="PROCN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012984">
        <property type="entry name" value="PROCT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027652">
        <property type="entry name" value="PRP8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021983">
        <property type="entry name" value="PRP8_domainIV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043173">
        <property type="entry name" value="Prp8_domainIV_fingers"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043172">
        <property type="entry name" value="Prp8_domainIV_palm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019581">
        <property type="entry name" value="Prp8_U5-snRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042516">
        <property type="entry name" value="Prp8_U5-snRNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019580">
        <property type="entry name" value="Prp8_U6-snRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019582">
        <property type="entry name" value="RRM_spliceosomal_PrP8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11140">
        <property type="entry name" value="PRE-MRNA SPLICING FACTOR PRP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11140:SF0">
        <property type="entry name" value="PRE-MRNA-PROCESSING-SPLICING FACTOR 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01398">
        <property type="entry name" value="JAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08083">
        <property type="entry name" value="PROCN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08084">
        <property type="entry name" value="PROCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12134">
        <property type="entry name" value="PRP8_domainIV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10598">
        <property type="entry name" value="RRM_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10597">
        <property type="entry name" value="U5_2-snRNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10596">
        <property type="entry name" value="U6-snRNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00232">
        <property type="entry name" value="JAB_MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50249">
        <property type="entry name" value="MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="5" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0747">Spliceosome</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1717"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3994506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1717" mass="199680" checksum="CE433DF98FB19D1B" modified="2020-12-02" version="1" fragment="single">GPVGKGPGCGFWAPGWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHYDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELALIEQAYDNPHEALSRIKRHLLTQRAFKEIGIEFMDLYSHLIPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWVKPADTEPPPLLVYKWCQGINNLQDVWETGEGECNVMMEAQFEKLYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLMLGLQRASEMAGPPQMPNDFLTYQDVQTEVSHPIRLYSRYVDRLHVFFRFTAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDMKNRLPRSVTTLEWENSFVSVYSKDNPNLLFDMSGFECRILPKCRTSFEEFTHRDGVWNLQNEVTKERTAQCFLRVDNDSLQKFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSQQTDAGITHFRSGMSHDEDQLIPNLYRYVQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSKPSLLADSRDIMDSTTTQKYWLDIQLRWGDYDSHDIERYTRAKYLDYTTDNMSIYPSPTGVLIGLDLAYNLHSAFGNWFPGVKPLLQQAMAKIMKANPALYVLRERVRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKLGDMILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNPDRTKVILKPDKTTVTEPHHIWSTLTDEEWVSVEVALKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATTTRTTNIHGDEIIVSTTSNYETQTFASKTEWRVRAISATNLHLRTNHIYVSSDDIKETGFTYILPKNVLKKFIVIADLRTQISGYMYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPNMLPQHDYLKEMEPLGWIHTQPNELPQLSPQDVTTHAKIMADNPTWDGEKTVIITCSFTPGSCSLTAYKLTPSGYEWGRNNKDTGNNPRGYLPSHYEKVQMLLSDRFLGFFMVPAQGSWNFNFMGVRHSPSMRYELMLSNPKEFYHEVHRPSHFLNFSTLEESEMVGTDREDAFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXK4</accession>
    <name>A0A6S7GXK4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aggrecan core</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A024593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003262">
        <property type="protein sequence ID" value="CAB3998084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXK4"/>
    <dbReference type="OrthoDB" id="5987336at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12522" checksum="2DF985F48223C83F" modified="2020-12-02" version="1" fragment="single">DHCAHKPCNSKEKCISGDSYECKCLNGYFGQEKTCSDILENEPLTSRQNLSEWLPQESRGNWSVCWRATRDGWDVKNFHSRCDKKKPTLTLVKVGVSIFGGYATESWDGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GY41</accession>
    <name>A0A6S7GY41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A012312</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001459">
        <property type="protein sequence ID" value="CAB3989291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GY41"/>
    <dbReference type="OrthoDB" id="6629592at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14341">
        <property type="entry name" value="UBA_MELK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048637">
        <property type="entry name" value="MELK_UBA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21594">
        <property type="entry name" value="UBA_MELK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="224"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="Maternal embryonic leucine zipper kinase UBA" evidence="3">
        <location>
            <begin position="674"/>
            <end position="714"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="787"/>
            <end position="845"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3989291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="845" mass="96888" checksum="B38644000D6AB467" modified="2020-12-02" version="1">MFTYSRNYLLSLRGFWKHIKITGANVSLPQISPSVWTVIRSYGLLGSVRGSRGGKKRCLNRVYSIPILENRYRTIFVRQNSGVNVSNLLNIQSRTICSVQPTVPPDNTPRINNRSKLKIAHLNVRSIKNRDHFLQTKFIVQENEYDIFAVSESWLNSTVRNADIEIEGYSLSRLDRLNKAGGGVCVYTRASLKVKILKDLTGISPSGFHQLWLQIQHKKIRSFLLCVTYRPPDSPVSHFVDEFTDAYTQALTHGKEVVVGDLNCDLLKCSPESDAFYNLCSILNLSQLVTLPTRVTPTTSSLIDVIMTSNTTIIKETRVIETHVSDHHLIDTCVNMKLPKPPVIYTTSRSYKKYQPKHLENDLVQISWQDILCTDDVNDKVDQFNRVFLAVLDKHAPLKTTKLKYRSMPFIDQNVKELMSKRDKMYKIARQTGVLRDWNQYTMMRDDVKRKLRESERKYVNKELEKNHSSNAMWKVIRKCIPRKEMTKPVYTKDKKLLAEEFNEYFTTVGRRTANQSENLGTEHNLFQLQLSQNAVSGIFDEFKFYAVTSEEIRQIVNHFSPNKAPGWDKITVNLIKDSLTFILPIITDLVNSSLLTSVFPTAWKRSEVTPVLKEGDYQVADNNRPISLLPVLSKTDPKQRLTVKQLFMHPWLNKGYANPVNSKARVKKDEPDSEVIKELALFYGVSPSTMTSLVKEYQFDDLTATYFLLCKKKSHGEPLKFTNSCIKAQRRKRKDMLALEKKISESRENIENEIYHDNPPSILVDDEDDVFSADLRDFRKPRACTLPPEFMGTPPINEMPSATRTSPPRTFLTPSLPKKEQPVPSSASNYEIGMGKPLSPETKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H0Z7</accession>
    <name>A0A6S7H0Z7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">28S ribosomal S18c, mitochondrial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A083170</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bS18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001640">
        <property type="protein sequence ID" value="CAB3990320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H0Z7"/>
    <dbReference type="OrthoDB" id="10066799at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005763">
        <property type="term" value="C:mitochondrial small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070181">
        <property type="term" value="F:small ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032543">
        <property type="term" value="P:mitochondrial translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.640.10">
        <property type="entry name" value="Ribosomal protein S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001648">
        <property type="entry name" value="Ribosomal_bS18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036870">
        <property type="entry name" value="Ribosomal_bS18_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00165">
        <property type="entry name" value="S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13479">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13479:SF40">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN BS18M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01084">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46911">
        <property type="entry name" value="Ribosomal protein S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3990320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="151" mass="17784" checksum="2AD0BD2AED7A82AA" modified="2020-12-02" version="1">MVVVHNLFSCFFVRSQSQLFSHNAFVIPLYRNLTLSSSVCGKYHYVKKKRRLKEERRSRLDVRLEKMDPEDRPTGCLLCPKHGDISINYKNVRLLSQFVSPHTGRIYSKVATGLCQLKQNEIKRAIRRARSLGYMPYTMKYLAFHQDPRLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H3W2</accession>
    <name>A0A6S7H3W2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Glutaredoxin-2, mitochondrial</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A031951</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Glutathione-dependent oxidoreductase that facilitates the maintenance of mitochondrial redox homeostasis upon induction of apoptosis by oxidative stress. Involved in response to hydrogen peroxide and regulation of apoptosis caused by oxidative stress. Acts as a very efficient catalyst of monothiol reactions because of its high affinity for protein glutathione-mixed disulfides. Can receive electrons not only from glutathione (GSH), but also from thioredoxin reductase supporting both monothiol and dithiol reactions. Efficiently catalyzes both glutathionylation and deglutathionylation of mitochondrial complex I, which in turn regulates the superoxide production by the complex. Overexpression decreases the susceptibility to apoptosis and prevents loss of cardiolipin and cytochrome c release.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer; active form. Homodimer; inactive form. The homodimer is probably linked by 1 2Fe-2S cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutaredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001876">
        <property type="protein sequence ID" value="CAB3991567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H3W2"/>
    <dbReference type="OrthoDB" id="418495at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015038">
        <property type="term" value="F:glutathione disulfide oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034599">
        <property type="term" value="P:cellular response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03419">
        <property type="entry name" value="GRX_GRXh_1_2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.30.10:FF:000026">
        <property type="entry name" value="Glutaredoxin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011899">
        <property type="entry name" value="Glutaredoxin_euk/vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014025">
        <property type="entry name" value="Glutaredoxin_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02180">
        <property type="entry name" value="GRX_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45694">
        <property type="entry name" value="GLUTAREDOXIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45694:SF18">
        <property type="entry name" value="GLUTAREDOXIN-1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00160">
        <property type="entry name" value="GLUTAREDOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51354">
        <property type="entry name" value="GLUTAREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0318">Glutathionylation</keyword>
    <keyword evidence="3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutaredoxin" evidence="9">
        <location>
            <begin position="567"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="360"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="148"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="360"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="392"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00037470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00038558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00039819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB3991567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="655" mass="73489" checksum="8D32E675DE2A15E0" modified="2020-12-02" version="1">MSSTEMFSQQKGSIPSKFDQYQRSQSQTTEDEPPNYYSKYVSNPPLFPASSKNNKLTRSMQAFIKEEKQNISMKEERDMLQTFINLLKDYTKEVDSSFTNFKSDMETTLQAIVKNMQDGSQRIDDKVLNLKQELVSIIEAKGKDKHEKRELNENISEQSGTIKVLETKAGILEKQLDEMKNKESAYIDQKSKFQELEQKYLQCINQWNANQALCLGNTPPSSQHTDPFCGYQIPPLHHNKADPGTYKTFPNGGPSSGYGYNPWQTGQTNDYYNPARNNPLPPDPVVYQKLPVHPMVNPTLPIHPMVNPNLPYANNSTVTCTPNPSYSIILATQAGSTSTTSHLGTQNSMSCQVPSRANQLYSTPNKSTPVSSHCSKVRNTGSPTPRSCGLKVSRRNSKRPKQSPMAMVKPQVRKPPPLLDDEIFVVDVIDPPETSWSMESLLDMDDKNPIPSKPANSAKYTPQSEPFIRNTHSDVTKKWCRQEDTVKRKRTSVSMLGVSSDDSEVQEIANLLREQSRHFSKRTKSANDGTSTQSPYYAEFKMGASSSNANKEQIKTWVNEEISSNLVVIFSKTYCPYCSKAKNAFQAAGLDKYTVHELDKRDDGDTILDVLRDMTGARTVPRVFIDKKFVGGGSEVEALQQKGELRSMLEACGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H3W8</accession>
    <name>A0A6S7H3W8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Extracellular calcium-sensing receptor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A069097</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003820">
        <property type="protein sequence ID" value="CAB4000365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H3W8"/>
    <dbReference type="OrthoDB" id="6021048at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.50.30:FF:000004">
        <property type="entry name" value="Taste receptor type 1 member 3-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.50.30">
        <property type="entry name" value="GPCR, family 3, nine cysteines domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001828">
        <property type="entry name" value="ANF_lig-bd_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000337">
        <property type="entry name" value="GPCR_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011500">
        <property type="entry name" value="GPCR_3_9-Cys_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038550">
        <property type="entry name" value="GPCR_3_9-Cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017978">
        <property type="entry name" value="GPCR_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050726">
        <property type="entry name" value="mGluR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24060">
        <property type="entry name" value="METABOTROPIC GLUTAMATE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00003">
        <property type="entry name" value="7tm_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01094">
        <property type="entry name" value="ANF_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07562">
        <property type="entry name" value="NCD3G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00248">
        <property type="entry name" value="GPCRMGR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57184">
        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50259">
        <property type="entry name" value="G_PROTEIN_RECEP_F3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="10" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="590"/>
            <end position="616"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="628"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="658"/>
            <end position="677"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="698"/>
            <end position="722"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="751"/>
            <end position="769"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="781"/>
            <end position="802"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="808"/>
            <end position="831"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="847"/>
            <end position="905"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="855"/>
            <end position="868"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="893"/>
            <end position="905"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4000365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="905" mass="100284" checksum="4E176BB8F4166323" modified="2020-12-02" version="1">MKSIVAKMFSAKQRIPKATFPRCLSLTLCTFVLLLNNIASSQDSTLYQDGDFVIEALLPITRGDGDLLDTYAIASEVVRVTIDQINNNSKLLTNVTLGYDIVNDKLDLHLIMKRAIGIVSKYRPGSICRQDEEFCTADQYLGPFIDKRVGAVIGPATSSSSVPSASLLGLYNIPQIGYSASSSILSDKSRFKSFLRTIPSDKYQAEAIASFVNKFDWNYVFFLGSDDEYGRQGLASFKMAARKLKVCTADDVNIPFQRPSDATKQTTKIIEKMKSMPRVGVAVLFMFEQQASQVLQEAEKQGLRNMTWILSDAIGPTIVNYDINADLLHGSFGVDFVYAKIPEFEEYLLSITVEKAASNPWMLKLLEKSLNCNSKAMPGKRQCRKDEKLDNNTLNLANRWSRLISIINSINAVAYGLDNLLKCNGRLANGLCPNTSFPLSGKDLYAYIQNASFTSPIGEQVSFDKSGDLDTKKYTFRNVLLDREKRTLEFKTVANWSSLQPDRPSFLENVDLTWNDGKIPSATCSQVCQPGQKQVGQSDCCWACHPCPRGKISNTTGATECYACPAGWYANDGQTECLKTSIDYVESSDAFSIVIISISTIGLVAVVIVASLFFYVKDTPLIQDSAPILLALLLLSTALGFLYSIFQVSLYRTDGVCRLLGGLLQFVLLMLASTLLAKTKTCDSHLKKFASHYIKPAAEYVALIFVGALLLFQLLLMGVWFLTDTPFVRYLESSQAVHIRECNSSWEAGRFIATGFPLLVLFFATVFAFKERDDRKNHHEAKYISFCTISICILLIAFFPTYRFAQGMTTSIVIATTTLVGALAICGCIILPKVYILVIQPERNVPEEERERSHNTVSSAHTAGSQHQPVFAEPGEELRPPNDVEFMSSASSAHEKDVVKDVPIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H4G0</accession>
    <name>A0A6S7H4G0_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">small monomeric GTPase</fullName>
            <ecNumber evidence="3">3.6.5.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">PACLA_8A038477</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="20">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>GTP + H2O = GDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="14">
            <dbReference type="Rhea" id="RHEA:19670"/>
        </physiologicalReaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="13">Golgi apparatus</location>
            <location evidence="13">Golgi stack membrane</location>
            <topology evidence="13">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 19">Belongs to the small GTPase superfamily. SAR1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.2" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020003611">
        <property type="protein sequence ID" value="CAB3999534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H4G0"/>
    <dbReference type="OrthoDB" id="15478at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032580">
        <property type="term" value="C:Golgi cisterna membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003925">
        <property type="term" value="F:G protein activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00879">
        <property type="entry name" value="Sar1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000161">
        <property type="entry name" value="Small COPII coat GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006689">
        <property type="entry name" value="Small_GTPase_ARF/SAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006687">
        <property type="entry name" value="Small_GTPase_SAR1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45684">
        <property type="entry name" value="RE74312P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00025">
        <property type="entry name" value="Arf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00328">
        <property type="entry name" value="SAR1GTPBP"/>
    </dbReference>
    <dbReference type="SMART" id="SM00177">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00178">
        <property type="entry name" value="SAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51417">
        <property type="entry name" value="ARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51422">
        <property type="entry name" value="SAR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 19" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="8 19" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="10 19" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="11 17" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 19" id="KW-0653">Protein transport</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 19" id="KW-0813">Transport</keyword>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="27"/>
            <end position="34"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="129"/>
            <end position="132"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00037843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00047660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR606687-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR606687-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR606689-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="RuleBase" id="RU003926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="CAB3999534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="192" mass="21778" checksum="1CBF03098F4C4AB3" modified="2020-12-02" version="1">MWLWDYLTGMLNYLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRMAQHVPTLHPTSEELSMGGMRFTTFDLGGHKQARRIWKDYFPAVNGIVFIVDTADVNRLPESKAELDSLLADEQLSHCPVLILGNKIDIPGAAGEEYIRQYFGLYGQTTGQAPQNVKESNQRPMELFMCSVLKRQGYGEGFRWLAQFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HBU3</accession>
    <name>A0A6S7HBU3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">SH3 domain-binding 5 homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A035711</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SH3BP5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002242">
        <property type="protein sequence ID" value="CAB3993341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HBU3"/>
    <dbReference type="OrthoDB" id="446789at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
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    <dbReference type="GO" id="GO:0004860">
        <property type="term" value="F:protein kinase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007940">
        <property type="entry name" value="SH3BP5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19423">
        <property type="entry name" value="SH3 DOMAIN-BINDING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19423:SF1">
        <property type="entry name" value="SH3 DOMAIN-BINDING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05276">
        <property type="entry name" value="SH3BP5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="296"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="81"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="162"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="300"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="310"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3993341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="344" mass="38859" checksum="A8BB058165E91AEC" modified="2020-12-02" version="1">MDNKSNKSSSDEDDEGLDPRIQGQLDRLNGFCTAVNHLEMELNEAQQLYRQVLSSASEQLKHKHKKLGKCVDRARPFYLANRDARQAFKQLQEAASDFERANEKYNSAKGKVAESEKKMMNDGRVFDGALQELLNHATVEVMEAAKLKRESSDSHQRVSLHFQATQKKVKELNRNLKGAILKSRGYFELTAALNRQLDQYKQRIFSVENGLRMAKQEYASALHALEQISDDIHRRREKNKLDEALASMPREDGVGAESDDDMKKIEAENRYHGDLILGETVDGLDRNEKSDFRSTHILSDGDEDIDSDHDDIIDGKISSRGERPSVSGSEGNNGEDAFSDIDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCD3</accession>
    <name>A0A6S7HCD3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A032676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003887">
        <property type="protein sequence ID" value="CAB4000650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCD3"/>
    <dbReference type="OrthoDB" id="10537893at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="291"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="312" mass="34714" checksum="02F4111913DD4F8F" modified="2020-12-02" version="1">MAYTELQGLFTSVLDTDFLMSFDVVITESSSENQSVSLEIFYELPSPSYLSSGEVLLSPLVVVGNMSEEETELRLTFPFLRDLPEDADFMAKWIRFYGGSSGDDVPMWQDIRTAEELDAFMVEIQQNYAKLHTQQNVSFCIVGSRDEPAVLYDYGTELEGEAYGDYTYTYEEYAAYYGTYDTANYGENYYTENNDGESNVTENNVAENNVAENNTADNFVTENVGASADSSDSPGTNVTLASASAALEKALQSPIPRPALGLPAPDVPTTQRPARPHPSPFDNVPLEKETKKKLKVKKVWKSSKSKKKDKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HD25</accession>
    <name>A0A6S7HD25_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072827</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CACRXK020003958">
        <property type="protein sequence ID" value="CAB4000910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5983013at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046700">
        <property type="entry name" value="DUF6570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051055">
        <property type="entry name" value="PIF1_helicase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47642:SF8">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20209">
        <property type="entry name" value="DUF6570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 2" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1978"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4000910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1978" mass="229185" checksum="8A54875ED124E8A1" modified="2020-12-02" version="1" fragment="single">MSVKASVEKYRQSNADKVKEIFKTSSKRYRQTNHEKVKDIFKTAATKYKKANPQKFRNVSTKATEKYRKANPEKFKDVSTKATEKYRKANPEKFKEVSSKATEKYRKANPEKFKDIYTKATAKYKKANPENFKKVSTKATEKYRKANPEKFKEISRKATAKYRMHNHEKVKHLFIKATVKYRKAKPEKSTDVIIKANTKYKQLNTDKVKLLANKAKAKYRKLNVNKVKESAKKASIKYKQTHPERYKQSQTTWNLKRKMLDAVLSETDKTVNEGKRPKFNSHASTDIDMPKLIRVFHSNISTGPEYVCTCCNQLWYKSSVTKSNISLYKLCSEEMLNTCLTGVKSVDNNEWICSTCHSNLKVGKIPTCAKANKMTFPEKPEALKNLTPLEERLISPRIPFMQVRELPSGGQLSIHGNVVNVPADVNSTVTVLPRPINESQTIPIKLKRRLSYKHHYQFQNVRPTKVLEAARYLVQTSDIFKNEGIQVLDNYPTDPVTSHQEWSEFVDEVKDKTETLGNLSNNLNTQDQENLETRTCDISIDNDTDDEWCEETERPSGVMDTLLQEPDITQHGDRIISFAPGEGNRPLGLFIDKDSEFLSFPTIYCGKRRPDNSERLVPVHYSTICKWELRSKDRRVAQCVPNIFYKLKKLQIKQIQGSASLSLRKCKTKGKTYTAGDLKSERSVNKLINLDEGFRVLRNLRGSPPYFERCKKDLFAMIRQLGNPTWFCSFSAAETRWIHLIKILGRLIDNKDYTDDQVKAMTWQKKSELIQKDPVTCARNFEHMVQLLIHDFIKSSVHPIGEVVDFFYRVEFQQRGSPHIHGLFWIKNAPEYGKDSNDDITTFVDSYISYKANSDEIDLVNLQRHRHSKTCKKNGHNACRFNFPLPPMPRTMILEPLPETDLDENVADKLKKDLGRIRSLLDSIKADETMNFFEFLERLDLSEKQYLKAIRLSLKHDTLLLKRSPTEIRINCYNANLLKAWQANMDIQFVLDPYACAVYILSYITKGQRGMSKLLRKACEEAKEGNKDIVNKVRHIGNKFLNAVEISAQEAVYLVLQMPLRRSSREFQFINTSDPNERTFLVKSMDKIKELPDHSLDIESDNVIKRYQRRPRQLQNWCLADFVAWFNCKNEINEQQTIKQSADPKLLTDDFLTENDFNDNVDDDVSEKDEILHEGDEYEMRGGIILVKRNKPRIIRSVRFNKNKDPENYCREQIMLYTPWRNEKKDLLKDFQTYHDRFEDVKDIIEKNRKQYENHSEILDQAVQDIESDEFGNVVAANAQYRDEQDKDIGSKESELFGCFDPGKNKQHIEYDLINDIGIYPRTNDDEELVIKRLKDDDFRKLVQSLNMEQKEFFYHVLNSVKTGNLPLRLFLSGGAGVGKSTVTNALYEALMRYLNAQPENDPDDVSCIKVAPTGKAAFNIRGNTLHSAFKIPANRGFKYCTLDRDRLNTIRSHLQRMQVIFIDEISMVGSGMFNFLDLRLQQIMGTKEPFGGLSIITVGDLFQLKPVFDHWIFENSSEGYNTLATNLWQQFFQMFELSQVMRQREDKDFAEILNRIREGEHTEDDIEVLKERILKLNSEHPDYPITSTHLFSTNMAVDQHNHEIFHKSANEKVDVKAIDIVLGDLSDDLKERVKKQIPNDPSKTMGLYSVCSILMGAKYDLTTNVSVVDGMTNGAECIIKKIDYRVPGSSRPSIIWVLFQEQHIGNDYRKEYSHLYNQTVEKNWVPIIEVTRQFRKHQLQLLRRQFPLRPSAAKTIHRCQGDTLNEAVVDLPSSKREHMHYVALSRLRTISGLHILNLNENKITVSKKVQEEMTRLRENALLDSHLPFLYKDTSGTFKILFQNVRSLHLHFPDVASDYNAKAAEINIFVETALCSNDNNDLYEIPSFQLFRNDIMLHGTRTPYGTAVYVKQNVHLLSEPLRCNYNDVEITLIRINQPVQNLHLVGIYRSKSKGPFACFTIYKNARIDIGIKTNTNNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HGI7</accession>
    <name>A0A6S7HGI7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Serine arginine-rich splicing factor 6-like isoform X1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A015730</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the splicing factor SR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005085">
        <property type="protein sequence ID" value="CAB4005065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HGI7"/>
    <dbReference type="OrthoDB" id="1099063at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12337">
        <property type="entry name" value="RRM1_SRSF4_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12339">
        <property type="entry name" value="RRM2_SRSF1_4_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000028">
        <property type="entry name" value="Putative serine/arginine-rich splicing factor 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050374">
        <property type="entry name" value="RRT5_SRSF_SR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23003">
        <property type="entry name" value="RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23003:SF51">
        <property type="entry name" value="SERINE-ARGININE PROTEIN 55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="7" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="73"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="194"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="9">
        <location>
            <begin position="85"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="206"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="245"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4005065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="267" mass="29929" checksum="4EE2839088CD08D7" modified="2020-12-02" version="1">MSRDRERGSRVFIGRLPHRADKRDIEKFFKGYGRIQDIHLKLGYAFIEFEDSRDADDAVHDLNNKDLLGDRVTVEHARPSRSGGYRSGGGGGGGGGYDRGRRDYGGRSGGGGGFTFRDKYGSPYNTEWRVVVENLSTRAGWQDLKDYMRQVGDVTFSQCHKDRAGEGVVEFSCEDDMKRAIRKLDGTELMGKRLKLTESKGTVPGGRRRSRSRSPKRSRSPRRSPSRSPKRSKSASRSPRRDSRSPSPNRGSPRRSASPQKRDGDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HNC1</accession>
    <name>A0A6S7HNC1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="23">Adhesion G -coupled receptor L3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="23" type="ORF">PACLA_8A069396</name>
    </gene>
    <organism evidence="23 24">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="23" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="23">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the G-protein coupled receptor 2 family. Adhesion G-protein coupled receptor (ADGR) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="23">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005340">
        <property type="protein sequence ID" value="CAB4005879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="5989160at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15040">
        <property type="entry name" value="7tmB2_Adhesion"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1070.10:FF:000058">
        <property type="entry name" value="Adhesion G protein-coupled receptor F5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000038">
        <property type="entry name" value="Fibrillin 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.220.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.320">
        <property type="entry name" value="6-Phosphogluconate Dehydrogenase, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1240.10">
        <property type="entry name" value="GPCR, family 2, extracellular hormone receptor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032471">
        <property type="entry name" value="AGRL2-4_GAIN_subdom_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000152">
        <property type="entry name" value="EGF-type_Asp/Asn_hydroxyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018097">
        <property type="entry name" value="EGF_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057244">
        <property type="entry name" value="GAIN_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046338">
        <property type="entry name" value="GAIN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017981">
        <property type="entry name" value="GPCR_2-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036445">
        <property type="entry name" value="GPCR_2_extracell_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001879">
        <property type="entry name" value="GPCR_2_extracellular_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000832">
        <property type="entry name" value="GPCR_2_secretin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000203">
        <property type="entry name" value="GPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009030">
        <property type="entry name" value="Growth_fac_rcpt_cys_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013098">
        <property type="entry name" value="Ig_I-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011">
        <property type="entry name" value="ADHESION G-PROTEIN COUPLED RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12011:SF347">
        <property type="entry name" value="FI21270P1-RELATED"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="7tm_2"/>
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        <property type="entry name" value="I-set"/>
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        <property type="entry name" value="GPCRSECRETIN"/>
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        <property type="match status" value="8"/>
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        <property type="match status" value="2"/>
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        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="Growth factor receptor domain"/>
        <property type="match status" value="3"/>
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        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="ASX_HYDROXYL"/>
        <property type="match status" value="8"/>
    </dbReference>
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        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="7"/>
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    </dbReference>
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        <property type="entry name" value="IG_LIKE"/>
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    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4 15" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="9" id="KW-0297">G-protein coupled receptor</keyword>
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    <keyword evidence="12 23" id="KW-0675">Receptor</keyword>
    <keyword evidence="24" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
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    <keyword evidence="14" id="KW-0807">Transducer</keyword>
    <keyword evidence="5 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="899"/>
            <end position="922"/>
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    <feature type="transmembrane region" description="Helical" evidence="17">
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            <begin position="1116"/>
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            <begin position="516"/>
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            <begin position="734"/>
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            <begin position="1246"/>
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        <location>
            <position position="1445"/>
        </location>
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        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
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    </evidence>
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    </evidence>
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    </evidence>
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    </evidence>
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    </evidence>
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        <source>
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    </evidence>
    <sequence length="1445" mass="157420" checksum="B51609564595A060" modified="2020-12-02" version="1" fragment="single">MNIRAIHVMTTPLVRLTMKVLLTVNVMLGILEMDLIVQVNINECLINPCHPNATCTDNEGSFVCECNVGFSGNGFNCSNINECSTNPCHPNATCTDNEGSFVCECNVGYSGNGFNCSNINECLINPCHPNATCTDNEGSFVCECNVGFSGSGFNCSNINECSTNPCHPNATCTDNEGSFVCECNVGFSGNGFNCSNINECSTNPCHPNATCTDNEGSFVCECNVGYSGNGFNCSNINECSSKPCHPDATCTDNEGSFVCECNVGYNGTGFKCSNINECSQGNPCHRNATCTDNEGSFDCDCNLGYSGNGFNCSNIDECLLYPCHANASCTDNDGSFECRCRIGFSGDGFSCTAFTDVQMDVQYSGYAGGMLEITCTVTGPSLPSFEWRKNNMILSLSTRVKIENNDKVSKLFVRKTAKPDSGNYYCIASKGEDTINSSVPVEVKLIPVVAVFPLSVSATEGDTIMLTCKISVGDEENIEVMWYNSKQSGSVGQTRKLDLSSIELSDGDQRYKAEYWCFAKNSDGPGRSQNVTVYIISRDFNEFCLEDNGSGYTWEKTPVGTSVIKNCPVGTIGTVTRFCKSNDGRQPVWGDVNLSNCRSRVVINLVDKISRLDEGFESENISDILGETEKVTEDGKLYEKDVENIVYILEKTKKRTKTQNDRQNFIRSSSNIVSQKRKDVWKNIPARNDLAKQIISGTDLNAKNYISQSAETGKVVSYSTPNIAVRGIRLPTVKPTEFEPKDISLLDTGGQGVIVPDVVTNEIDLATVVQYSSIKDILSEIQLKETVDSTIGSTESLTIRSTIVSFTTEPQLKNKSVSEPFKIVLQNNLTGYEDPRRTCAFFEPDKNNSILSSEGCTLNEAESSVESVTCDCDHNTAFAVMMDVSGVQLTESERKILEMISTVGCSISLVGIVLTILMQALFWKQVKSLRAKILVSLCVAIGFTDVFAILEGVAKDSSQNSCKAVAALLHFFVLSAFGWMLCEGILLYFLLIRVFEGVRGKHWKIFNFIGWGIPLLIVVVSLGTTQGEGYGTESSCWLSVGSKVIWAFVGPAVFVILANIFVFVMILRTMKNFHTVEQQTSIAKVKTGVKTAMAIFPILGLTWVFGLMTFNRETVVFRYLFAVFNSAQGLFIFLFHCVLNKQMREVVHDSITKRSSLSSSFGTKRVGRSMNSSSLPSKTGDSDINPEMVEKNAMSSKSECGAHNLNISVAEEANEHEENEETRHSSPNASVRSEHSLGRNNDAVEMDSKGYHSGESENSSSADRHSDNEDAHLNGKILLHLKSRYGSTGLDGPMGDIGPPGIAGIPGLQGEPGDPGFCPVEICDAIQEARFLESRVEALENLFKQHVLHSDVKPTESPLMALHITSDILLTKGNFSNGKIGIPSNVKVNIALKNAAPLIATSQHGGKFLVNSTVRLLDRSKVAEMQKSAIARTPVLDGVSMTEQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTW4</accession>
    <name>A0A6S7HTW4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005964">
        <property type="protein sequence ID" value="CAB4007937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="OrthoDB" id="10265867at2759"/>
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        <property type="component" value="Unassembled WGS sequence"/>
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    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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    <dbReference type="GO" id="GO:0030833">
        <property type="term" value="P:regulation of actin filament polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="Cytoplasmic_FMR1-int"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12195">
        <property type="entry name" value="CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="FragX_IP"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="FMR1_interacting"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01698">
        <property type="entry name" value="CYTOFMRPINTP"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4007937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="470" mass="53857" checksum="88C547D2B57F5D81" modified="2020-12-02" version="1">MFINNYSVKCVVVFQELENLLDVVHQTHKLLSNYMTLIPFDAMLKEVNHCVSAPYGRTTLHVFWELNFDFLPNYCYNSATNRFVKTPLSFVEEVQRENPPKAAHHYFFGTKAQNAAFNSINALYNNFVGPAHFESMTRLLGYQGIAVVIEELLKVIKSLVQGQLKQYIVELIQGLPKKCGLPRYEYGSKAVLEYYHAHLEPLVQYSYLRTDVFQAFREIGNGVLFIILIEQSMSIDEVLDLLQAAPFQGIIPRPYLQEGEKLESKMKKLEQQYAPFQVVSLISRFGTKEQLNIAHEGELLTKERLCCGLSLVEVMLKRVQSFLHDEVWQTSVPLNGVMTVEECKDFHSLWSAILFIICQPIGQNEISVEQLFGEGLYWAGCAFVVLLNQQKRFEALDFCSHIVKVYDVDPRDETVGGVSLKRLVEKARNVKVLNQQIFSSLNKYLKSTEGSLEQVRCFQPPIHQPYVSSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HZA5</accession>
    <name>A0A6S7HZA5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A004704</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003287">
        <property type="protein sequence ID" value="CAB3998167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HZA5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043411460" evidence="2">
        <location>
            <begin position="23"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="217"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="329"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="427"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="480"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="220"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="336"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="353"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="427"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="443"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="522"/>
            <end position="549"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3998167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="822" mass="92937" checksum="81CA3ED45DD8F727" modified="2020-12-02" version="1">MPSFSRYIVLLIFVQVFASVLADEKHFGKSDSTPQSEKATNSHDGLQKIESEERLGYLYINYEATKKPTKKVVYNTTQNITAFVEESEKPLLIVNGNTQGYIKSNESSFKNKVEENELSHVRLSNFTDRIPKTDKRLLTISRQEQTADSTMLNVHQPDTARIEPKRGHVLNKFQTSFQKAGTQERNKERYMKNGQTGIQIKQGIKKTERAKLGKWVDGLTKGEQRTRTGEDSRKNGRESYEKSRESAWENIEQTGGKVELDRAGSEWRKNERNEIRNVESDRESALESIEKSRKGEWKNIEEERKAVESSGEVERIGSEWNKGETTHIGTVQKNGEINEGRVEKSRMGKWRKKGGEGKMIDSKGEMDRIESELGKGETNEFRIEQSDGETAKERIEKSRLGEWRKIGVRRKAVIGVEELSGIESELRKGEKSEFRIRQSNRKTASDKIEKSRKGVLGERRKAVERIKELGGIDVELDKDEKNEFRTEQSNGKIENEDEWRNMIGSTEEQKQIDGDLSEGENSELRIGESNREKTAAKVGESDHRIEGKNRQYRTRYVGGKGQVDQGGGDETEYGRIGMVNEGQHALAGAKEEVLNGIEGITKPGSQSWEGTEGQDKTGQRWMEKMREGGRRVLGVHGKNQGGILEKQGELWIEANIGQLQGLRKQGVNGVGTQGGRMVLGELNERIMGEQRMIDRVDKGELRIGAANMGELKERLEKQESDSAKGTTEMAKEGVFRGKAVGGRVIKGMMTEQRRMNRDREGEGTILRKQERKAGMTVGINEYKGRSGKEIKNEQIVAESGIKERKTGWDKLLGVEGGGRDEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I191</accession>
    <name>A0A6S7I191_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A053425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006859">
        <property type="protein sequence ID" value="CAB4010649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I191"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4010649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="235" mass="26649" checksum="A5821B8676835133" modified="2020-12-02" version="1">MKESTDTHTDREKSELERTNRCETISDQTSSAEQGEYSGITVKISDHSSRKRRTVHQLSDEDISAHEKKRNYDLEASVQSLVLQQKETTSDTEKQQDDLKQNQTSPQRHSHRPRLSNTCTSPKKGLLQRQQGQETEEETKQATCQTKAKADIKSSSSSEIATTGKQSNPALENLLQTLLKYSSLFQKDEDGDTILHLAIVHKNINLTFATILAMVRRKKENDKGINIQNKLLQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6E8</accession>
    <name>A0A6S7I6E8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A083333</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007586">
        <property type="protein sequence ID" value="CAB4012647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6E8"/>
    <dbReference type="OrthoDB" id="5986226at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4012647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23402" checksum="2E16C0A64D24D567" modified="2020-12-02" version="1" fragment="single">MRECAFIRHVRESTKLLDDGRIEVRMPWKPEHTNLPNNRSVAFERMVSKENFGDKPAPDLAINAINLLADRAQVEFSKTARILKDNTHVDDVAGWETSPEKVKKVVDGIHTILGKGKFAIKTWHSNSPEIDQDGNENPVSLLGHQWNKKADSIALKSETVCTDLSYRTKRKDVGVVSQLWDLLGLMAPLTIRFRIDLQNLYEWDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I7W1</accession>
    <name>A0A6S7I7W1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A041616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020008485">
        <property type="protein sequence ID" value="CAB4014875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I7W1"/>
    <dbReference type="OrthoDB" id="5985722at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041320">
        <property type="entry name" value="CxC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040521">
        <property type="entry name" value="KDZ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33096:SF1">
        <property type="entry name" value="CXC1-LIKE CYSTEINE CLUSTER ASSOCIATED WITH KDZ TRANSPOSASES DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33096">
        <property type="entry name" value="CXC2 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18802">
        <property type="entry name" value="CxC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18758">
        <property type="entry name" value="KDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4014875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="322" mass="36566" checksum="224BFA277B000C73" modified="2020-12-02" version="1">MVLFCPCEEDAVTLVKLQLWPGSAKRPQVAFHSKLMMLAEMLLLECHVSLKKFCDTLGLEKSNMLPTWKNDRQDILSSVELAIPVFHSYGHKSLCQIGNSPRRKSAFGLTDSEGIERLWAYLRGFSAITKEMIPGRRVDVLTDGLLHYAQHRINQFGPSLLAKVKRAKELLETTKLQLDEIFSKLQVPLDASLIERWTDEEKSLLLSRNRLPGCLDFDDVKDPESSIYQDFKVVADEQVPFSIKRTVIDLHHLTERCKEELGLVNIEIASIAEFSTDNLQAESEMQDLLCDSDSEDDIDEDVFEIGISDDDAEDDDDMLLDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IIL3</accession>
    <name>A0A6S7IIL3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084131</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GOLGA6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009574">
        <property type="protein sequence ID" value="CAB4017506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IIL3"/>
    <dbReference type="OrthoDB" id="76453at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026737">
        <property type="entry name" value="GOLGA6L"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143">
        <property type="entry name" value="TRICHOHYALIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23143:SF23">
        <property type="entry name" value="ZINC FINGER PROTEIN 729-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4017506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="722" mass="83239" checksum="CA9CC7B156340813" modified="2020-12-02" version="1">MVLHIEDQVLLSEDKVLHAEDKVLHPEDKVLNTEDKVIHSEDKTRFLTLTTSYLTEDEVPQFEDKFIQSEDKVLYSENKALHSEDKFPHTVDKVAHSEDKVLHSADKDKVLHAEDKVFHPEDKVPHFEDKVILNSEDKVLHSEDKVSHTVDKVPHFEDKVLHSDDKALHSVDKVLHSEDKVLHSADKVHHSEDKVPHSEDKDKVLHSADKVPHSEDKVLHYQDKVPHSEDMVLHSEDKVLHSEDKVLYSEVKVLQSDDKVSHTVDNVAHIEVKVLHSEDKVLHSEDKVLHSADKVPHFEDKVLHSEDKVLQSEDQIPHFEDKDKVLHSADKVPHYEDMVLHYEDKVLLSEDKVLHGEDEVFHPEDNVPHTEDKVLNSEDKVLHSEDKGLHSADKVPHSEDKVVHYQDNDLHSEDKFLHPEDMVPHTVGKVPHFEDKVLHSEDKVFQSEVKVLQFEDKVSHTVDKVPHFEFKVLHSEDKVLHSEDKVLHSADKVPHSEDKVLHSENKVLQFEDKVPHYEDKVVHYQDNDLHSEDKFLHPEDMVPHTVGKVPHFDDKVRYSEDKVLHSEVKVLQSEDKVSHTVDKVPHFEVKVLHSEDKVLHSEDKVLHSADKVPHFEDKVLHSEDKVLQCEDKVPHFEDKDKVLHSADKVPHTEDKVLHSEDKVLHSEDKVLISQDKVLQSEDKVPHTVDKVPHFEVKVLHSEDKVLHSEDKGSSLCGQGSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IL52</accession>
    <name>A0A6S7IL52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016263</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009850">
        <property type="protein sequence ID" value="CAB4018093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IL52"/>
    <dbReference type="OrthoDB" id="5952815at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057456">
        <property type="entry name" value="Znf_C17orf113"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880:SF5">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46880">
        <property type="entry name" value="RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25431">
        <property type="entry name" value="zf-C17orf113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4018093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="250" mass="28614" checksum="653F93F0AB34CA8C" modified="2020-12-02" version="1" fragment="single">MLKYLIKTTKTPDDDTGNGLDDDMANDDNNDDIVVPVVRNAKKDRREKRSAEVKRKYESEKRCRKFSANWKKSFPWVKLSDDKSKMFCDICMLYPTLCDKDSKFVKGGCGNLHIKSLQTHDKSAAHQKCVRHNKAKNSTPGSTPAETMIQKMNEKEFEKMQVLFRIAHSLAKKGRPFEDFPWSLDLHEAAHNISLGHTYRNSKQCHNFISFIAEAERMKLATDLACVPFYSVMTDGTTDSSISEAEIMYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IY68</accession>
    <name>A0A6S7IY68_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A051259</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011634">
        <property type="protein sequence ID" value="CAB4021809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IY68"/>
    <dbReference type="OrthoDB" id="5988509at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043501396" evidence="3">
        <location>
            <begin position="21"/>
            <end position="877"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="799"/>
            <end position="847"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="689"/>
            <end position="751"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4021809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="877" mass="98791" checksum="1300B2AF95D3C309" modified="2020-12-02" version="1">MTLCILQPALCSTVIHIVLTADLQEIFRSNRHTMTTTHSSYIVTRDFENAHRAAICYTHVRFGRRRLSNLVRMGSPIKSLSLREDADGSVCLHKKVKTGIYKSVSDFGFGILYMVKFEGPLNNISGYVFEVNKSLGETQISKKCFISCQNLDSAKKFKNTLNQALADCGGVFWEDIRDSQLQSLLKDMTREYFINGGKAKKAVTVVGRQGILKPGSKRQPENDVYVFNESLQFNWEGEIIDTNDREYMWMDSYLCPSEDKDLFVSNAELKIDVPDSPVFFSWNNFLDSALPVLNVNYYQSLMMLAGSIACFHYPYSIQIADACPAPTAIGPPGSGKSTTIHLVSKMLGCNVESQATCEVIQSLISKTTVPLCWDDPTYPSSVKSLLTGSFDSKGKRTKGRGKEIPLTNVVLAVNFELDDDIRCFERIVPVVYSAPFAPEDPTKYRQAKDHLEEQTNTGCLPWIIKLGGKLVNNKNLVDQQIAYFREKDPALPPRVHKLYGLYKAIVIEIISEYNAGDFGTTPPSISSEEFEEYLDKIFLPYVRKVILPSSSALKPMKQLQDVSEFFQCLKESLKDVTGLDKELQKCVRPYVLTTTKDGYAMHMILPDVLAILKNRTADTPAAFNLRKLRKSIENCEGTSVDHSGFFEGVQRRCVKIPRSMLDEDLLELIDKACGKDGHEGGNEDRNDGCRNTNEIIDNLKKNLNASEEHNCSLISDKKKLEDDLSSEKIKFARAEERIINLEKDFAQREKQWKVKEKELCDTIRKLRPQPQLERSVHDTSCESIVATSFATVVCNEDTYQPTPSSMGEKRSLDDSGISLDDNEEVAKTPKAFADGQKKKRRSNEIDRLKDSLHKGIVEGTRSEQRIIETSSVENKSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J0E3</accession>
    <name>A0A6S7J0E3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF5641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A033403</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012597">
        <property type="protein sequence ID" value="CAB4023627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J0E3"/>
    <dbReference type="OrthoDB" id="5984724at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040676">
        <property type="entry name" value="DUF5641"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18701">
        <property type="entry name" value="DUF5641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5641" evidence="2">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4023627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="108" mass="12347" checksum="0D2DC60BD50B924E" modified="2020-12-02" version="1">MVILRNDNSRRTFWKLAKVEMLLPSSDGTVRSAKVMVNGESGKRITLRRPIQYLIPLEVQASATDDSRVQSRADQQNTEIKDNDQLQRRTPRRKAAVVGEIVRRQLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J732</accession>
    <name>A0A6S7J732_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PREDICTED: uncharacterized protein LOC107327085</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A027133</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013819">
        <property type="protein sequence ID" value="CAB4025774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J732"/>
    <dbReference type="OrthoDB" id="5948939at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.10">
        <property type="entry name" value="Hect, E3 ligase catalytic domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000569">
        <property type="entry name" value="HECT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035983">
        <property type="entry name" value="Hect_E3_ubiquitin_ligase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56204">
        <property type="entry name" value="Hect, E3 ligase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50237">
        <property type="entry name" value="HECT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0833">Ubl conjugation pathway</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4025774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="371" mass="40475" checksum="82F528E3A96959BE" modified="2020-12-02" version="1">MASECSFSTAINLLRQATDILSASSTKINSDATSTVTPNNSNQSSDQPRLTNRPNRCVSNQTSTQVVQHSQQPVAGPSQSAASSYSNELCASTSNREQAVLSNFRILFVTTVVQLASGGGFEILRSGSNNCLILIPVPSLGYSVPYLRDHSGLGQALAYIHPLQARLDLSPAEVDQAPKVNCLQCGEEFLLTNIQSHHELCGIPNQVEIESAEDSIVEIEEVMFPNKDVPEINASLEGSGGDLEEAVAGLLSPKEATSNEGLAPSIKCLLNDYQNQRTMDHSALLLHIDRNNIWKHALIFYKSKSSVELKRPLSISFDGSNECGIDAGALKQEFFEILLRVINEDLFEGKETQRIPGRGWEKANFLKIMEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JCF5</accession>
    <name>A0A6S7JCF5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A042312</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014326">
        <property type="protein sequence ID" value="CAB4026650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JCF5"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4026650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="565" mass="64837" checksum="9694D3FB5164C811" modified="2020-12-02" version="1" fragment="single">DASPVGLGAVLAQTQENGKDRCIAYASRSLTPVEARYSQTEKEALAAVWGCERFHLYLVGTQFDLITDHNPLEVIYSPKSKPPLRIERWLLRLQQYKFNIKYRPGSSNPADVLSRQPLFTNYKSSTIAEKYVNFIQSHSVPKSLTLDEIRIATLNDPELQRVTSAVKEDRWNKTDSCLSPYRNQHEQLTSLRSRVLSIAHEGHQGIVKTKMLVRSKVWWPGIDKQVEQMVKECVPCQAAVHQSPKCQPPLNMTKLPPHPWHTLNADFCGPILNGEKLLVVIDAYSRYPEVEVMQSTTTTVVISKLQRIFARHGYPEELIIDNGPPFNAVEFTEYLAAHGVHHRRITPYWPQANGEAERFMKTVTKAIRTAHSEGKRWQSELDLFLLNYRSTPHSTTHISPAELLFNRSIRNKLPSFSSLQHNDGPVEHHVVRDKEEKEKMKVHADRRNNAKESQLKVGDYVLMQVPKDNKLSMPFNPKPFKVIEIKGNMVTARNTERTVTRNVSCFKCLTNYKNASEEDQNDEEDDFDDGIVENQQPTIVEEQQQDLPDLQQRYQKETTCKEIGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JHA3</accession>
    <name>A0A6S7JHA3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A008478</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020015447">
        <property type="protein sequence ID" value="CAB4028380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JHA3"/>
    <dbReference type="OrthoDB" id="7701249at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34239:SF2">
        <property type="entry name" value="TRANSPOSABLE ELEMENT P TRANSPOSASE_THAP9 CONSERVED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="300"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="316"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4028380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="362" mass="40679" checksum="BC592FA661D1E408" modified="2020-12-02" version="1">MAAKNREIEEGIMPSDHEENDLLAEVDDEPMSVDLKAVPKVLTDLSKAITSMSSSMLNMEQSIKRMNSTQVETSDSEEQPAKKRKRRNEQENEADSDDSDGENLLRETEPPADSATEGESGVPCARLEHDALLSEISQDFDKEEDSTKLNEAKIKEKMEKYPRPANCEKLIAPRVNAEIWDKLDQKAKHHDLRASAIQKSIAKVGSILAVSTDKLVQMRHKSLLEVDTLVKMNTDVLALLGHTMCELSMRRRDAIKPNLHKDYGSLCASQVPVTSFLFGDNLQTRLNDIRASNKISKTTVQERFGQAKSRGRFSIGGSNLNNNTGSDNRQRKGNPFLSKGRQWKQHPPKPPFLPRKNSQTRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIV2</accession>
    <name>A0A6S7JIV2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009175">
        <property type="protein sequence ID" value="CAB4016581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIV2"/>
    <dbReference type="OrthoDB" id="2273864at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="359"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="491"/>
            <end position="551"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="370"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="506"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="551" mass="63374" checksum="4417674920A3E778" modified="2020-12-02" version="1" fragment="single">NQKGSIRTDRIKLRHQDVRYEVVYQEGKLNKVDFTSRKAKPLQMMTNEEREEAEELNNLLYMLHTTPVMDSIGIGNIAIHTKMDETLTELAKIIQNDRKWIPKTLHPKVRRFEQLIPEITIAGNGVMFKGERIILPESLQDTAIQLAHRGSLMGQSGIERRLRYHFFFHDMHPKVKQFVESCKECNIFSDKKTSEPIKAHEVPRKCWETIAVDLFGPMPSSKHVVVVQDLASRFPAAKLVASTKASHVLPAMDEIYNSYGNPEHQLSDNGPPFNSEAMEAFAQKRDIHLKKIPPLHPSANPVETFMKPLGKTMKIAHYNKSSEKEALNHLLMNYRDTPHPATGIPPAAMLFKESSKSAFPRRSVPAEQVEEARGKDKAMKQDRQDQVNASKYKIPSEFQIGDDVMLRNYRKSSKFDPVFLPENCEIVECSDDDRFLTIERKRDGTIFKRHPDDVKCYYGPHDTVMERGVISDEAIENGEWHRWFEQCRPKVDDSYESGNQDEEDKQETNHVEPGHENGGEVSSANDCPGSCIPRRPQRLRRPNPRYIDYEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JIY7</accession>
    <name>A0A6S7JIY7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A069819</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017368">
        <property type="protein sequence ID" value="CAB4031117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JIY7"/>
    <dbReference type="OrthoDB" id="5986182at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="376" mass="43147" checksum="E7C639DE562D588C" modified="2020-12-02" version="1" fragment="single">WCLVNVKALAYTCSQLHPVGSSDHNAILIKPYLHRKQKHNNSRQWKRDLRDSRVRSFGQWITNYDWLEVFETSDSALKLEKFIETILLMVDSFFPIMLTRIRQSDKPWMTSSLKIAVNKRQNALHKHGKSSEVYKFWRGKVQCDVKAAPIIQLKNTHPSRWWREIKTLGGLSSQDCWYNQLLSEVNPTWSELAESYNNFLVGLTSHFQPLDHNDTGELMEVPDRFLVDTGKVYSTLRHIKVTKSPGPDDIPNKILKTFAFELALVVTDIYNASMVQGNFPQQLKRAFVIPIPKVSPPGSIEDDLRPISLTSQIGKVMEGFTLDSLLGEVSSKLDTKQFAMPRKSTTQALVYLLHLIHAGLDVGHCYARLFFADFRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJ82</accession>
    <name>A0A6S7JJ82_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A025197</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009240">
        <property type="protein sequence ID" value="CAB4016742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJ82"/>
    <dbReference type="OrthoDB" id="423732at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="114" mass="13369" checksum="73AC993D31F322B7" modified="2020-12-02" version="1">MFADDTKCHRAVRNLQDKEVLQSDLNNITNWCQDWRTDLNKSKCGVRQFTRCLQPTINQYTLVDIPVKPLTCEKDRGISITKDLKWNQNVQDISSKANKMLGRFCQENNVRHSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JK45</accession>
    <name>A0A6S7JK45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAT dimerization domain-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A039596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017389">
        <property type="protein sequence ID" value="CAB4031151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JK45"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF14">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="109" mass="12299" checksum="313CB0B3F16EBE44" modified="2020-12-02" version="1">MDESNPRAKTAANVVDKMFQDGLCDLLPVLYEAATILASIPATFCTAERSFSGLRRVKTYLRSTMGEERLNSIAVINIERAYANRTIKNDMVKIIDTFGRRNGRDSYFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLD0</accession>
    <name>A0A6S7JLD0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">52 kDa repressor of the inhibitor of the kinase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040589</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017265">
        <property type="protein sequence ID" value="CAB4030964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLD0"/>
    <dbReference type="OrthoDB" id="6602887at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052958">
        <property type="entry name" value="IFN-induced_PKR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289">
        <property type="entry name" value="52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46289:SF14">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="86"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4030964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="446" mass="50323" checksum="1340CF700D1D3DC9" modified="2020-12-02" version="1">MSGSNNGLQKKVSDAYPNAVYVHCRSHVLNLALAGACTGIDSVRDLFDNVAKITSFLGDGAKRKEMFKQNAATEANDELTALLTESGNDDNEEEEDEDENDDDHGLHKSNKAILRGAKKKTVPKLCPTRWSSRVETLSALMAKYSSVMETLEQIAAQSKGEPRHNAQSYIRLMETPQFIVALVVVQFILSFTAAVTKILQAKECNLGDAYEEVNGAKECIRASRADDSWIKLWGKIQSIGTALGIEITKPRTAVNQRHRPNAGNANQTSEDYYRINVYYPFIDRVVEEIETRFKVQHKGLIAAQSLVPVYLDRLTDLNKKDLKEFFGKYLTFCEENRLDSEIVRWKRKFADVPLKQKPKTACDAAVKCDATFYPVINKILTIFLTIPVGSVCCERSFSALRRLKLWTRASMNQERLSGLAMLMIHRDSLCIPRPEDVYARKANWRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JM12</accession>
    <name>A0A6S7JM12_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A079086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017428">
        <property type="protein sequence ID" value="CAB4031194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JM12"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="20758" checksum="9332F8F544A56562" modified="2020-12-02" version="1">MSIRESSGQVAKRGLQNVVDPYHWQQMDWEFTIRKYEMSIRESSGQVAKRGLQNVVDPYHWQQMDWEFTIRKYEMSIRESSGQVAKRGLQNVVDPYHWQQMDWEFTIRKYEMSIRESSGQVAKRGLQNVVDPYHWQQMDWEFTIRKYEMSIRESSGQVAKRGLQNVVDLYHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JT13</accession>
    <name>A0A6S7JT13_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020021421">
        <property type="protein sequence ID" value="CAB4035845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JT13"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="143"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4035845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="208" mass="23745" checksum="3067096F0F59BF80" modified="2020-12-02" version="1" fragment="single">MLHDLSRYLLSKISWDFTVSDIPKTWICETLDSIATKYIRKWLELPVSATLSNVLLPQNKFGLNIILPSTKFIQCQTVSRSALKYSPNVDINNLWAVTSTNKNVQYDIYKDTKDVLKAVRKENEQRLQNHLISQGSFFSSIMNHSTSTFNSLWSSVQSKLPKNIFNFTIRYINNTLPTRKNLSKWGLSSTSDCSFCSSPETLLHVIAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JTC6</accession>
    <name>A0A6S7JTC6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A039945</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010446">
        <property type="protein sequence ID" value="CAB4019421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JTC6"/>
    <dbReference type="OrthoDB" id="536372at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031410">
        <property type="term" value="C:cytoplasmic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001764">
        <property type="term" value="P:neuron migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029865">
        <property type="entry name" value="KIAA0319-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013980">
        <property type="entry name" value="MANSC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011106">
        <property type="entry name" value="MANSC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46182">
        <property type="entry name" value="FI19480P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46182:SF2">
        <property type="entry name" value="FI19480P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23597">
        <property type="entry name" value="KIAA0319_N"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00765">
        <property type="entry name" value="MANEC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50986">
        <property type="entry name" value="MANSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4019421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="539" mass="59414" checksum="56646B8C68AA5234" modified="2020-12-02" version="1" fragment="single">MPRGGFSTDYVEHVGTVRGVKECVRSCCGSRDCDMAFMLANHCYRISCSREPKKCEPTKARGKNKFVSKLVKLTRKPIDDALSLAFHMKSHKDELQCTHSPISTNVTLRGGANAGKFSNLGEVESMHMCTALCCAKPTCDLAFMIGETCVAVECVNEEMCQTVRARPTGFSPKISYIRRREINKNVKKAKIASTHIPEPTYTQHVHTKPNPLPTTHFTYVSDRTSCTVTLATPNITLRHGLDGENAKLLGKVDSMEECIAMSCNNIGGNTAFLLGERCYVVQCPPRKFCDTIPLGRKGVTSVMAYLQKPRSRLDYDGIDDKTANDMRNTLCSGKRILKNHAIHGGLKAGNFTEISAIDSIENCTVLCCREKRCEIAMMLNGVCFVGNCWNKENCKPVRLPSKAGVVSHLGFKIPLEDETLQEKHVVTAPNTHKIVSYRLPAPTILKTSTCSAEKIFHNVTLIGGMKAANITSLGKASTMQECIGMSCDYGQGDLVLMLGKDCYTVKCVNERVCQTVPAQPSKFYSRVAYLKWGSTINET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JU08</accession>
    <name>A0A6S7JU08_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol poly from transposon 412, partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A013678</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007998">
        <property type="protein sequence ID" value="CAB4013728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JU08"/>
    <dbReference type="OrthoDB" id="3227343at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="203" mass="23747" checksum="5F5A48D34A78D71C" modified="2020-12-02" version="1">MFGIEKRRTTAYHPQTDVLCRRFNGILKSLLRIRVNKEKNDWDEQLLHALLADRVCTQSSTGATPFEMLYGREVRLPFGMDQEKLVSSPTHGPAKYVEELKKRQDILRKLVTKRIEKAQEKQKRSYDLRYGAQQNKRFDMGDSVLLKNFRARGLDEKHTGPYIIVNIRENDCEIESLESRKRKVVHANNLRRFVVETVAIIFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K682</accession>
    <name>A0A6S7K682_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066134</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020027690">
        <property type="protein sequence ID" value="CAB4041046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K682"/>
    <dbReference type="OrthoDB" id="5985425at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010420">
        <property type="term" value="F:polyprenyldihydroxybenzoate methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43464:SF23">
        <property type="entry name" value="JUVENILE HORMONE ACID O-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43464">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="228" mass="25117" checksum="E3C6E629326ACCE7" modified="2020-12-02" version="1">MHTMATFDGYTHVDKLMEKALKEGTTKEELKEAYVAWSKTYEKDMCINHSYSGPAVAAEQLAQQMKEFGYTDDTRILDLGCGTGLVGDELVNRGYKNIDGVDLMPEMLEVAKAKGIYGLLQQGSMGSPECKDLGIGANQYDVAICVGTFTLAHVKSEGLDDLVHVVKPGGLVAFGIRERALDAPQSGYREKMDQLCKEGKWKFVAKHHEAVYLTGDGAGAWYFVYQIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K793</accession>
    <name>A0A6S7K793_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009213">
        <property type="protein sequence ID" value="CAB4016678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K793"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4016678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="111" mass="12770" checksum="7B28C3E1C8ADB416" modified="2020-12-02" version="1">MEPLATEDEARVYAEQVTLEEQQQQELMRRFSGEVSLDSWCKCSFCSLNHVVNMEECRCCTEMEEFMQKVSSYSPDNSEQGNCVTEHSGFDEVCLKQWVLEVAGISLKNKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KBU6</accession>
    <name>A0A6S7KBU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025375">
        <property type="protein sequence ID" value="CAB4039430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KBU6"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4039430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12773" checksum="9D16926E5716B65E" modified="2020-12-02" version="1" fragment="single">LTNYCSRYIPDYSSLTFQIRQLTKKNVTFHWDHSHEKAFQSLKNAITTSPVLAHYNLTAETKVVVDASPWALGAVLLQKQADDNYRPIAYGSRSLTDVEQKYCHIEKEGLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KHE7</accession>
    <name>A0A6S7KHE7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A022936</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020029774">
        <property type="protein sequence ID" value="CAB4042254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KHE7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="520"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="520"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4042254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="749" mass="86783" checksum="7063AEAA09BFBF45" modified="2020-12-02" version="1" fragment="single">DKVPQAEDKVPHAEYKEKVPHADDNVPHADDKIPHAEDKVPDAEDRVPHAEYKFPHAEDKVPLAEDKVLHAEDKVAHGADKVAHAGDKVPHAEDKVPHAEDKVPQAEDKVSHAEYKDNVPHADDNVPHADDKIPHAEDKVPDADDKVSHADNKIPHTEVKVLHAEDKVLHAADKVLHAEDKVAHPEDQVPQADDKVSHADNKIPHTEVKVLHAEDKVLHAADKVPHAEDKVPHADDKVPHADDKIPHAEDNVFHASDRFFTLKARYLALRTRFLTPRTRFFTLRTSFLKRRTRLFTLRTRLLTPRTRFLTLTIRFLTLIIRSLTLRTRFLTLRTRFLNAEYKIPTLTLRTRFLTLRTSFLPRRTRFITPRTRYLTPRRTLLAPRTRFLTLRTRFLTLRTRLLTLTNRFLKLTIRFLTLIIRSLTLRTRLLTLRTSFLPRRTRFITPRTRYLTPRRTLLAPRTRFLTLRTRFLTLRTRSLKLGTRFLTQRTRFLTLRTRLFTPRTRFMTLRIKVPYADDKVPHAEDKVPHAEDKVPQAGHKVPHTADKIPHAEDKAFHAEDKVHDAEDKVPHAEYKDNVPHADDNVPHADDKIPQAENKVPDVKVAHPEDQGPQGDDKVSHADNKIPHTEVKVLHAEDKVVHAEDKVSHADNKIPHTEVKVLHAEDKVVHAEDKVPHAEDKVHHAEDKVPHADDKIPRFLTLRTRFFTLRTRFLTLRPRFITLKIRFLTLMIRFLTLRTMFSTLRTGSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KKZ0</accession>
    <name>A0A6S7KKZ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A063180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031449">
        <property type="protein sequence ID" value="CAB4043071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KKZ0"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="188"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="190"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="215"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="254"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="454" mass="49145" checksum="A76623CDEB156FED" modified="2020-12-02" version="1">MPPKKADERVLFDKFENLNERLDSLVKTAESKSETGCQPTTAKILATAIQRLYKEHEESYNDWVLSTSISEEKFLSTKKTFNRLAMKCDNILVNLQIAAGSVDLVEVTTKTDKPRLPKIEFRPFESGKGNPKLWFEQLEVVLKTMAVSSQDQKFALCGRSGEGKRKWHPSKRVDGCRLISPSSPIVAPVNPVPSSPQLPKPLSSLVTPSVRASCDPSTHPSSLVTPSSRASSHPSVTPPSHAPQAMPSSPSIHQVTPPSQTPQATPSSLNPIVDPSSVVSVTAPEGFLSPFQAGKFMVDSGSPVTIVPVLDVSQPSVDSGLRDASGNTIRTYGKRLVNVPIDGRIVPFQALCCNVVRPILGRDFFKGPGKDLLLDLSQDKIVNRINGYRGSSIASNDNDSVCALAGNSLNPLAIPFRTTSSLEAARKEAKRLVQTFVETQGPDDGFSPSLFRAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KPX5</accession>
    <name>A0A6S7KPX5_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Metalloendopeptidase</fullName>
            <ecNumber evidence="8">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A082444</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7 8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7 8">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="8"/>
    <dbReference type="EMBL" id="CACRXK020015866">
        <property type="protein sequence ID" value="CAB4028992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KPX5"/>
    <dbReference type="OrthoDB" id="10063818at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04280">
        <property type="entry name" value="ZnMc_astacin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034035">
        <property type="entry name" value="Astacin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001506">
        <property type="entry name" value="Peptidase_M12A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000884">
        <property type="entry name" value="TSP1_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10127">
        <property type="entry name" value="DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10127:SF780">
        <property type="entry name" value="METALLOENDOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01400">
        <property type="entry name" value="Astacin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00480">
        <property type="entry name" value="ASTACIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51864">
        <property type="entry name" value="ASTACIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50092">
        <property type="entry name" value="TSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3 7 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1 7 8" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7 8" id="KW-0862">Zinc</keyword>
    <feature type="active site" evidence="7">
        <location>
            <position position="671"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="670"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="674"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="680"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4028992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="862" mass="99218" checksum="FFB28015FFEE2F92" modified="2020-12-02" version="1">MVPDMETTSFEYSTKNIPLPSEDDYRAKLIELTEQLCRRMRWRALFYLNPEKCNSGTKDTFGFNSNRTPPPIAEMAKFEKRMTNMIANVKFKKVNCPFQTDKTTNYYKMDSPSYNKLLEKNITKTYKKITPDTVSSINNEAKDIATKLDLADRINITAEPKSEIGKVSKQLLDRINQKVIAHQYSFIAFDVVDFYPSISIDLLNAALDFASNYDDITDDERNIILHAKKSCLYNSREHWGKKTSSNLFDVTMGSYDGAESCELVGSFLLHQITQKHGENFGLYRDDGLGVIKATPRKIKIIKKDICSIFNNYDLKITIEANKKIVDFLDVTLNLSTQKYQPFTKPNNMPFYVHNKSNHPPKILDNIPAAINKRLSEISSDEDSFQRAVPLYQEALTKSGYQHKLKYQQPPTSQNTINSRSRNITWYNPPFSKNVATNIGQTFLKILDEEFPADHILHKIFNRNTVKISYSCMSNFKQNIDGHNKSKLSHRAIKTPDEKKCNCQKSSECPMSKNCLAKSVIYQATVKTSDMRPTQTYVGLTENEFKTRYTNHKASFNNYEKRNSTELSKYIWNLKNNNISYPIRWKILKRAKSYSNASKRCNLCIWEKYFIICKPDIATLNRRNELVSTCRHKRTRAGSVRCSSQVGKSYREGAQEVSLGPGCNYAGTVIHELMHALGFWHEQSRPDRDEYVEIFWENIKKGKDGNFKKYSHGLVDILGTNYDFESVMHYRGKSFSKNGQATIRAIKNPERTLGQRLKLSDVDVIKIDALYDCKDSGSGVWSLWSELSPCLSTCYKHRQRFCSSSDRAKDCPRADKFGIQTEFVKCSDKECYGKIDEYLFSINRWSVETFSNVDSDGQAALIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSN5</accession>
    <name>A0A6S7LSN5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A035544</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028251">
        <property type="protein sequence ID" value="CAB4041399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSN5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4041399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="161" mass="18184" checksum="C78CFC637A6FEADA" modified="2020-12-02" version="1" fragment="single">GLLPTPNTPKIHSPNPEDYVKCSYYPIPVQAVNIIESFNIRCQPTWDINVATKYVKFKAEWDLCGQVYTSVNVDVFPKSVLGSLATYNLDQPFWNTSFTGKKLCLKLEWKVPSQHSRINVSNSSIYNQNSTDFALNSSTNSPSSFSTPYRVAIIKVIKRTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LV53</accession>
    <name>A0A6S7LV53_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A058888</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020037790">
        <property type="protein sequence ID" value="CAB4045143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LV53"/>
    <dbReference type="OrthoDB" id="5989151at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395:SF22">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33395">
        <property type="entry name" value="TRANSCRIPTASE, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4045143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12436" checksum="3BFED61DFA6A6EDA" modified="2020-12-02" version="1" fragment="single">TITETEVFKLLTTLKTSKATGHDRISAKLLKDSADVITETLTQIFNKSVLLGKFPDDMKVAIISPIYKTGSKTETTNYRSLSVLSVVAKIFEKMISQLSNYLETNGVIVKQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LVK8</accession>
    <name>A0A6S7LVK8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072988</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020049357">
        <property type="protein sequence ID" value="CAB4046292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LVK8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4046292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="74" mass="8068" checksum="27967AA652516EE5" modified="2020-12-02" version="1">MLVADPLELFDGEVPELRAQVLLNRLRQLAEHQVPLDVVGRQAVEQRRDAGAEHGEGFASAEALPVEALVASLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DEB8</accession>
    <name>A0A7D9DEB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038866</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000536">
        <property type="protein sequence ID" value="CAB3982734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DEB8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="111"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="132"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3982734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="309" mass="34804" checksum="84A1C85D992BDF7E" modified="2020-12-02" version="1">MVKPSQSGKSHNYPSGRKSYSTSRAGVGGRKKKKSTTPSAPTYFDILLQTQTQSRCNYNTDDENDASSIAKTKLKATSETERTINSNMSSSANIDPNIEEYGHVDHYAAVQAPSSSSESSAEDNRLFDSNTDDTSSSHISMTSTIHGSSDNVAQETFERKETLDFREFKLEKYVKAFPCLYYHSVEKGYKCKTCELFPPLGTTSGQSRLKFGQEAVKNLTDHRTRYLRGHEKSHKHQNAITQYKGSDLQEQVLGEYLKYANSHKIATDLFPNSVGQFIKVVSDWMRKETMSDVKNCSDFTLLVGEYRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGX7</accession>
    <name>A0A7D9DGX7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A045404</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000749">
        <property type="protein sequence ID" value="CAB3984515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGX7"/>
    <dbReference type="OrthoDB" id="6379928at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3984515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="374" mass="41700" checksum="50E5C7CCE534B012" modified="2020-12-02" version="1">MVPTTTKIKPYNSPTIPVIGIAKCAVTFGSTSIPVDWHIIDTPCEPVLAGQSAVQLGIIQFDPQAEVYQPVQMIQCSKKEALEDILKKYPQNFEGLGKLKNHQVKLHVHPSVKPVASPARPVPYHLKERIRTEIDKMVAQDVIEEHPPTEPAPWVSNAVIAPKSDGAIRMTLDARNVNKAIQASNLPIPRQEDIKAKLSGAKVFSKMDFKSAFWQLELHPDSRYLTVFHANDKLYRYKRLTMGVKPAQGELNMALQPLFAHIPQAHLIHDDLIVATETDAEHHSAITAVMQAITNAGITLNPSKCTFGATEIEFWGLRIGSTGVRPDPAKVEALKHITPPRSKEEFSLYDAVQCRFHSKLRTTRGQTERTDQEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E2B8</accession>
    <name>A0A7D9E2B8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ragulator complex LAMTOR2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A011480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GAMAD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003469">
        <property type="protein sequence ID" value="CAB3998921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E2B8"/>
    <dbReference type="OrthoDB" id="271745at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060090">
        <property type="term" value="F:molecular adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032008">
        <property type="term" value="P:positive regulation of TOR signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.450.30:FF:000004">
        <property type="entry name" value="ragulator complex protein LAMTOR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.30">
        <property type="entry name" value="Dynein light chain 2a, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037587">
        <property type="entry name" value="LAMTOR2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004942">
        <property type="entry name" value="Roadblock/LAMTOR2_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13323">
        <property type="entry name" value="LATE ENDOSOMAL/LYSOSOMAL MP1 INTERACTING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03259">
        <property type="entry name" value="Robl_LC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00960">
        <property type="entry name" value="Robl_LC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103196">
        <property type="entry name" value="Roadblock/LC7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3998921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="127" mass="13489" checksum="D152F8E8DCAFD845" modified="2020-12-02" version="1">MLKPKVLTELLAQETTGGIMSTILLKSNGSLLAFAGSGDKEARVTAAIASSIWTAYHSNIKQSFHTESLNFVLMDCDDGKVAITSISDLLLCLHSKKSVGLGLLKTKTLALAKYLEGPLSELDHAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E6C7</accession>
    <name>A0A7D9E6C7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Amino acid transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A056358</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004467">
        <property type="protein sequence ID" value="CAB4002848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E6C7"/>
    <dbReference type="OrthoDB" id="5877963at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="entry name" value="Sodium:dicarboxylate symporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050746">
        <property type="entry name" value="DAACS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958:SF63">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11958">
        <property type="entry name" value="SODIUM/DICARBOXYLATE SYMPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="Proton glutamate symport protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0769">Symport</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4002848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="178" mass="19450" checksum="A892716780A7167E" modified="2020-12-02" version="1">MDIFIWPDESLHLIYSIPTVFCFGISGVVYSDIFCAEYYEYSGNIPSEYLRISTNITNIPASIPSLSSSIATLAAPPVPASTPLAVHGLVLPIIGIPKADIGLIVAIDWFVDRFATPVSIWANCIACVIIEHYSREDLQPLKDVTTPREETCTTVGNDANSDVTIDVAEEEEVKTEIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8M0</accession>
    <name>A0A7D9E8M0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A073120</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004617">
        <property type="protein sequence ID" value="CAB4003388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E8M0"/>
    <dbReference type="OrthoDB" id="5981708at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="200"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="269"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="31"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="204"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="279"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4003388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="355" mass="41560" checksum="82B87BA35EA49BAF" modified="2020-12-02" version="1">MMEKRVSKLSITTDDLERRENLAKRFNRTATNRLKQQHEQFRENHDHVENEINQEMKKLQGDLRGIREIGNYDVRNSTHEMNGQANDSSIGTKRKRTKFTLFQKKSKSNSRRKFNRDEGGRRVQFHPENSSQVISVENYKTAGTDLFNLARNEKQPRITKTRDIYTQHDVTSGKHGVRFDEHGISGHAGRSVGRETQLVGQKTRIYEHEKPDGHERRVSENETRSDKHETLPRITKSATQDTKSCELYVHEARNLARKRLLRENGQLIGEHGISENETDSSTQNEQEATSNEEIESYMYVPPDGRKRTVYLLPPLEELLQEARKARYLRMPKRLMNYEDDPERELSVDEIFNKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9U7</accession>
    <name>A0A7D9E9U7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">DNA repair RAD50-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">PACLA_8A007998</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="14">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Chromosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the SMC family. RAD50 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004615">
        <property type="protein sequence ID" value="CAB4003385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9U7"/>
    <dbReference type="OrthoDB" id="6021015at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000794">
        <property type="term" value="C:condensed nuclear chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030870">
        <property type="term" value="C:Mre11 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003691">
        <property type="term" value="F:double-stranded telomeric DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051880">
        <property type="term" value="F:G-quadruplex DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043047">
        <property type="term" value="F:single-stranded telomeric DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070192">
        <property type="term" value="P:chromosome organization involved in meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006302">
        <property type="term" value="P:double-strand break repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000722">
        <property type="term" value="P:telomere maintenance via recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007004">
        <property type="term" value="P:telomere maintenance via telomerase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000947">
        <property type="entry name" value="DNA repair protein RAD50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18867:SF12">
        <property type="entry name" value="DNA REPAIR PROTEIN RAD50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18867">
        <property type="entry name" value="RAD50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13558">
        <property type="entry name" value="SbcC_Walker_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0158">Chromosome</keyword>
    <keyword evidence="10" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00049360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CAB4003385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="251" mass="29053" checksum="E4A5B8C79193885D" modified="2020-12-02" version="1">MKRLEEYRKQKATCEGMQTGYEREIQRFQKDLEGSLFKDAESKHRKKLIEIKTTELANDDLDKYYKALDRAIMKFHSIKMAEINKIVKEYWTNTYKGSDIDTIEIRSDEDPENSSITSRRSYNYKVVMIKGDVALDMRGRCSAGQKVLASLIIRLALAETFCLNCGVLTLDEPTTNLDEENIESLAHQLASIVQTRNPQKNFQLVVITHDEHFVDLLSQADFVEYYYRVAKDERGISRIYKQSTSGVELNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EGH6</accession>
    <name>A0A7D9EGH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine threonine- kinase HT1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A064917</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006480">
        <property type="protein sequence ID" value="CAB4009523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EGH6"/>
    <dbReference type="OrthoDB" id="5974690at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00180">
        <property type="entry name" value="PKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051681">
        <property type="entry name" value="Ser/Thr_Kinases-Pseudokinases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44329">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="319"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="356"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="363"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="379" mass="42532" checksum="3C615950BE70F4A1" modified="2020-12-02" version="1">MEKANNEISQFQKKRRMRNCRKKRRRQERALANRMVNEEVLAQKVNAAVKEQKALAEKYLPSGKTFLKKQTNFDVLMDTAATGNASLTKMSTASVKQIRPCELLPLEVNNSATIPVGSGTYGDCFLKTFKRFGITVVEKKLTTSDLKAVMNEAQYMNTLTHASIPYLLGVQIEEKPFSLVMQFVGDENLESVTIHKLLHQTIPKHLLLSANEWISVLLDIAEALFHVHIKGFLHCDVKSNNVLVTEKKGFLIDFGKACLISRPKARKYTSFYNHIATEVLRGQPESASSDVFSFGVIIYTIGKKLPNACLESLGRHCKDAKPASRPTMPEGKKRITGFTPKHGTHKQILTRLTSHGNQVTARTDQHQTTAEEHRAATRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EH69</accession>
    <name>A0A7D9EH69_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Tetratricopeptide repeat 39C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A063297</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006277">
        <property type="protein sequence ID" value="CAB4008930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EH69"/>
    <dbReference type="OrthoDB" id="2154985at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000173">
        <property type="entry name" value="Neurogenic locus notch protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001881">
        <property type="entry name" value="EGF-like_Ca-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019412">
        <property type="entry name" value="IML2/TPR_39"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31859">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31859:SF1">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 39C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00008">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10300">
        <property type="entry name" value="Iml2-TPR_39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00179">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="1 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="598"/>
            <end position="607"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="651"/>
            <end position="660"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="739"/>
            <end position="748"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="778"/>
            <end position="787"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="819"/>
            <end position="828"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4008930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="877" mass="98300" checksum="1178AFB65C345414" modified="2020-12-02" version="1">MGSMFAEEDYIMVRCSVEILLNNGCLAARKYLVDKRNKSSLLNSASSFVEFLSSLLTLDETHIDEAISCLKETQRYCITQRNILKQEKCSADDLRLLMNEIFSTDAELYMAILSILKQGLKDYVKGAFLIRKSWKQYKRNYDKILKIGGPFLNLNGNSEYQLCHLHENNPEVLSNVEQETVNSDVSSCSCYNVETKTVSSHALHEVQAAIAFGYGLFNLVVSLTPPKVLQLVQFFGFHGNQELGLSCLKYVCASQNVKAELSRLGLLWYHAIIRPMYAFDDNDVECGLEEASQLLQGLQENLLLSPVALYFEGLLFRCKGNFSDATRSLNLALEKPLAYKEMIMFCDYEIGWCHLLEMQWDLAIQAFIKVKDVTRWSQCFYVYLIGVLHGVQGNTNEAVIYFRYVPSLVKRKTPLAVFLIRKATCCVQAPPNDAESLVLLLEIIYLWECLPTCSSVTLSCLLQGLEKTVKDDFVALKLFLTAYVLHRLGRLTQAIECYKEAMTAGENIVGDKHVLPFAAYELGIISAKISQFDKGQEFLRKAKETCSGYDFENRLKLKIDIAMKKMEERAKKELVTSDSSGNNGVCVNLDEKTYDCRCSPKYTGPNCESGCSKFFLIQLQQFLLARLRCVPNPCKHGGVCFESRQTFRCVCRKMFTGKDCSKRVVIHDKCTPNPCKYNGVCRTSEDGKRAFCKCPTYKFKAPFCVDNPCSAKPCRNNATCFNVSVSLLTQNDRSYGCRCAIGFTGSKCEIKLPDPCLRNPCRNGGVCKPSKGVAVCHCKSGYVRPYCLRPPPGVSKCYPNPCLYAGECVEKGGGYHCKCKKHFTGTHCQILMDDCKDCNSKFAHCFRGKCVCKPGYVGDGKTCVPALSGKCSACAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EKL4</accession>
    <name>A0A7D9EKL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A072638</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007257">
        <property type="protein sequence ID" value="CAB4011754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EKL4"/>
    <dbReference type="OrthoDB" id="6021232at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704:SF9">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46704">
        <property type="entry name" value="CXC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="206" mass="23740" checksum="C61B30C54AE940BE" modified="2020-12-02" version="1">MQNNEIGEEHHFEPQNDAKKKDLAFPLCRYLGKGITLPNWTRFNTKLIYKRDIPTQSKIGYLPIIDASSTELSTVKEILNQSEKIADKLNLKYMCLVFDDAIYAKVQQIRWKEEGYLSRFIVRLGDFHMAMSYCGAISKRFKDAGLKDILIESEIVAVGSINGVMSGKHYNRSVRSHKVVYEALVRLLFQRYLESLSADKKMKLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ELU6</accession>
    <name>A0A7D9ELU6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Norphogenetic</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A019071</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006760">
        <property type="protein sequence ID" value="CAB4010355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ELU6"/>
    <dbReference type="OrthoDB" id="5994219at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014883">
        <property type="entry name" value="VRR_NUC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08774">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4010355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="246" mass="27867" checksum="AA69259EEA05D46F" modified="2020-12-02" version="1">MILINETDLHNVIVSYIRDNYPKAIILPGLSEYQDTVSKRCDAWKKGYKGGQPDLIIENPMGKYKGFAIEFKSPKGTGVISENQDIWFRKLRGIGYMTMVSDDLVQTCIRINEYFSLKKTVRKVAVRNSTCDVKTYRPRFNSDKPEQIQAQVTSEKKKDPKRVAAGKRLAAISKIAKERKKKLAEPKEPSSNDSMITYIGVAIALVSLVLAFKSHQRETREPEPKHATETVEITREADASKLDSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H6K6</accession>
    <name>A0A7D9H6K6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A051584</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000015">
        <property type="protein sequence ID" value="CAB3976818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H6K6"/>
    <dbReference type="OrthoDB" id="2192888at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3976818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="107" mass="11857" checksum="7D283C59B35038FD" modified="2020-12-02" version="1" fragment="single">MVKIRKVKKKNWAKRQSCSSNPSIKSHRDAARRGFRHECQAGSSLTVEALAKHNDNIDDEDIVLDDAETTGRSMATVSISGLTDCSNPTFSGVLKRFWQSPGANHQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9H8T9</accession>
    <name>A0A7D9H8T9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized transposon-derived</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A019185</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000054">
        <property type="protein sequence ID" value="CAB3977555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9H8T9"/>
    <dbReference type="OrthoDB" id="5968624at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585:SF1">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46585">
        <property type="entry name" value="INTEGRASE CORE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3977555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="23330" checksum="53A42BFB0ECB41D9" modified="2020-12-02" version="1">MKDAVSNCLEQFKNHFGKYPKFVQFDQGTEFYNKEVKSLLNKHNIEFFSTYSDKKAAVVERFNRTLKALMWNGSTSTVPAYINGKPSEPKFVVGESVRISKYKSVFTKGYEANFTEELFIVTEVCLGHPNTYTIKDSAGEPIIGRFYEQELYSAEGREPNFRIEKLLRRRTVKGKKMALIKWLGYDDKFNSWIPAGDIKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HD32</accession>
    <name>A0A7D9HD32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A043333</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000305">
        <property type="protein sequence ID" value="CAB3980603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HD32"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="113" mass="12273" checksum="FCD7FA9AD3916DDB" modified="2020-12-02" version="1">MTFVGDVGSTLTEGMREDKTVSAKKEIMIIRNTQFVANIEESVKVRGVDKGTGCLKRRVPGVVTEGVDNGLQMARVDCFTLETVMAFVLVLCAKNAIYSSARSDAVEGWVVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HDN7</accession>
    <name>A0A7D9HDN7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A034932</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000193">
        <property type="protein sequence ID" value="CAB3979392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HDN7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3979392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="205" mass="23474" checksum="F867DAAAF97BEF80" modified="2020-12-02" version="1">MEGLFLTIVLSIVIPLLILLIWFFVIFILVKKCVFNKRHPSENGDTVPCRFHDCAGETTAISDCPDEPILSNQERSSDVHEHYERGSFAANQTLQLPLYSTLPRNASRPFSSDCSRDDRRTNSRHGYRLCPRNYSPFSQDTSLNQSETMQELSMYCDRYIADAHYDPPPPYNSRENVREHSQLTRTVSGREAVSLSSAYGCETWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HF35</accession>
    <name>A0A7D9HF35_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Prefoldin subunit 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A065117</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prefoldin subunit alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000415">
        <property type="protein sequence ID" value="CAB3981660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HF35"/>
    <dbReference type="OrthoDB" id="10267474at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016272">
        <property type="term" value="C:prefoldin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990113">
        <property type="term" value="P:RNA polymerase I assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990114">
        <property type="term" value="P:RNA polymerase II core complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990115">
        <property type="term" value="P:RNA polymerase III assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd23157">
        <property type="entry name" value="Prefoldin_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.370:FF:000004">
        <property type="entry name" value="Probable prefoldin subunit 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011599">
        <property type="entry name" value="PFD_alpha_archaea"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009053">
        <property type="entry name" value="Prefoldin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004127">
        <property type="entry name" value="Prefoldin_subunit_alpha"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00293">
        <property type="entry name" value="prefoldin subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12674">
        <property type="entry name" value="PREFOLDIN SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12674:SF2">
        <property type="entry name" value="PREFOLDIN SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02996">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46579">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB3981660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="158" mass="17377" checksum="5EA60CBDFDAA3125" modified="2020-12-02" version="1">MASTSAAGPQSVELSQLPLPQLDSLKAQLDEEIRILSESISHLKIAQQKFVDSKEAVKKLREKKGTEVLVPLSASLYVPGQLESTDNVLVDIGTGYFASKSLEGAEKYFLRKIEFLTKQIEKVQPGLIEKHRIRQAIIDTMSAKVRGQMSSQLPAAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HPK1</accession>
    <name>A0A7D9HPK1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001534">
        <property type="protein sequence ID" value="CAB3989682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HPK1"/>
    <dbReference type="OrthoDB" id="10057281at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035082">
        <property type="term" value="P:axoneme assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027968">
        <property type="entry name" value="JHY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14726">
        <property type="entry name" value="JHY PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14726:SF1">
        <property type="entry name" value="JHY PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15261">
        <property type="entry name" value="JHY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="372"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="449"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="391"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="449"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3989682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="469" mass="52794" checksum="0CC479B6FFD3BFD8" modified="2020-12-02" version="1">MAELVMDPNNVYIENVNEELLRDSLESSVERCNNVSISTMRTNETDSHKTSKEHSYVSSHNDLAKVHSAVDKEPKTGTKKHVMKRKPKNMIELNKMNIIKKGQAVSSYSKMHQKKLGRIAPIEKNGNSQPETSGPNNAAIEFHKQLVLDGILTDKDEFNNFGSYENNMALSGLHTLIERDEYSLESTRSNETNMSHFGKGYFVEAEPSMPDNGYKFEFVDSRKTNLAFSSPEDGKISHEHQLPPVRTFATSVQSAPADIQYSDLSYEKSFRSSSLHALLKPGESYAGLNNSMTSLASTKSIAEHGDSMTYSGIYANGKQNSRNNYKPYTLGDYKRLKKQSKPGGLGPDIKSEEHQQKAKKAIRQKAYSVAVKQRNTSETCHSSKKKRTATTKEVSVQKQEANARREKALEYAKTIPKPITSKNQNVWKVPSKAEEEPQTLLAILQQRHENEKKAVDDMRKDLQAKLTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HTE1</accession>
    <name>A0A7D9HTE1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A004754</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001649">
        <property type="protein sequence ID" value="CAB3990384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HTE1"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF4">
        <property type="entry name" value="PEPTIDASE S1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="346" mass="39941" checksum="34F7C42AB8DE88C1" modified="2020-12-02" version="1" fragment="single">MDKDKVKNIRRAAKGTLTRAFIACKNLIDAQRPVVEVKEACDVVKNAYNGLEVKHEEFTMVLDDTQYDEAEEWMQACNSEYMKFSMMYNDYLNANVAEKENDDVVNQAINEDGNNANVDGENDENNSVNDDQESLDMHEPAEDELSSVTKNVKLSSPFAMKHEKPKLPKFDGDVRQYFIFKSDFQHAVEAHCSERDTLTILRSCLNAQPAKLIEGISSDLKTAWKYLDQNYGNPRVVSDTVTSDLEKFKIIQPGEDYRFCELVNLVRRSYNILKEVKRKQDIDNTHVISLIERKMTKDDLRVWSRHINSRKLEPSMENLLEWMEEEMTARIRSCATIRKNTGTRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HWQ2</accession>
    <name>A0A7D9HWQ2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ankyrin repeat-containing</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A038296</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001710">
        <property type="protein sequence ID" value="CAB3990701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HWQ2"/>
    <dbReference type="OrthoDB" id="194358at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050776">
        <property type="entry name" value="Ank_Repeat/CDKN_Inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24201:SF15">
        <property type="entry name" value="ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12874">
        <property type="entry name" value="zf-met"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="C2H2-type" evidence="4">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="230"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="241"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3990701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="361" mass="39655" checksum="31FB1D016DC157CC" modified="2020-12-02" version="1">MSFSNSLLPCTRCCGQYECVCCAKRTFPNSYALIKHLRKSFAHKEKNESFWCALCEESFQSKVGYILHLKQKRIHKYDLHQAACCGRFQDVGHLIHTEDADVTGASHKVKPANSPRQLGMTPMHCAAFMGYSRCLKVMLSWPDGNPNIPDELGQTPVHLAARRGRASSLRLLLDSGGNLGKRDKNGENPIRLANDDDDCMDVILGYQISAMIAKYRLKEVKAKKSMDFGESGITEADDDSSGSGSSLSETGEYSQNCVGDSSKDDDETVEGAVCPEKITISSRFTATLPFTASIDDNDLSSPQMLPTDKMVESQHGETNSKGNLTTMCSGLKHDDETGKELDGTKNIITKVQDIKNVYAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9HZD4</accession>
    <name>A0A7D9HZD4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcium-responsive transcription factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A082267</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003109">
        <property type="protein sequence ID" value="CAB3997484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9HZD4"/>
    <dbReference type="OrthoDB" id="5981231at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029309">
        <property type="entry name" value="CaRF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47456">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47456:SF1">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15299">
        <property type="entry name" value="ALS2CR8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="315"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="315"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3997484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="400" mass="46483" checksum="C5CDE716C7E26AA9" modified="2020-12-02" version="1">MAGDYKPHFDVQITPNCGYVYSREQAEQVVREFETRTTSKYSCYKSRSSFGRTDLCKSKHRVRWEDGNKDACTRMGFDGVPFIILDSKILDCQHGVDRHNYRKTKAQSDAHRDHDFKKRRFRVQGTKKFGCEAKINMCEVIKFPQFAIPIEIDSRKRRDVAAAKLKEALQENANLGERRIYMYLPTPADHTTHLNGEATGMSQPVDERIVKKIRILVGEGVNNVREMGRHIRQYVKNELFLGQELPPCTNRRFHPKQVDIRNHMYLATIESRFSKFDQENVSAKTGDWEKKYAEDNFFYRPYQEGCITVRTTSAAEDKKEKNVNDKSENVNDDNAKRENEDEAKEGNDDQAKEEDDMAIGLQEHVNLEKSLLFVHQSAWQRRLHCLPLRFSSRASLGKMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ID52</accession>
    <name>A0A7D9ID52_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA transposase THAP9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A020258</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004797">
        <property type="protein sequence ID" value="CAB4004060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ID52"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006612">
        <property type="entry name" value="THAP_Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05485">
        <property type="entry name" value="THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50950">
        <property type="entry name" value="ZF_THAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4004060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="77" mass="8950" checksum="33C79DCAAD3094BB" modified="2020-12-02" version="1" fragment="single">MPRANCSIFGCGTNRRHTGVGIFRIPSGNDERSKAIRDEWIRIITKYCVVDANFRKQIESGNVYVCERHFKKEEIEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IHD7</accession>
    <name>A0A7D9IHD7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">M-phase phospho 8-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A072782</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006273">
        <property type="protein sequence ID" value="CAB4008923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IHD7"/>
    <dbReference type="OrthoDB" id="5987469at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00024">
        <property type="entry name" value="CD_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023779">
        <property type="entry name" value="Chromodomain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051219">
        <property type="entry name" value="Heterochromatin_chromo-domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22812">
        <property type="entry name" value="CHROMOBOX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00598">
        <property type="entry name" value="CHROMO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4008923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="117" mass="13933" checksum="8FA3DE9301A7AD6E" modified="2020-12-02" version="1">MAVHFYRELNNLSTADFLVENRKKRGKFYQAERIISRRTRKRKVEYLVKWSGYSSLDNSWEPEENLNAFALSHIDCLQGCGELEPQNPQGYWWENCVNAKVSNRKTFYQLQKTTIFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IIG1</accession>
    <name>A0A7D9IIG1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Myosin heavy fast skeletal muscle</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">PACLA_8A087374</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="17">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The aspartyl protease (PR) mediates the proteolytic cleavages of the Gag and Gag-Pol polyproteins after assembly of the VLP.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006757">
        <property type="protein sequence ID" value="CAB4010346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IIG1"/>
    <dbReference type="OrthoDB" id="6373930at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="15" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-1188">Viral release from host cell</keyword>
    <keyword evidence="14" id="KW-0917">Virion maturation</keyword>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="222"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="16">
        <location>
            <begin position="233"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CAB4010346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="649" mass="72273" checksum="ABBA5039D0491632" modified="2020-12-02" version="1">MATATNPTGYGPRRGLLFNGDESKYELWEVKFLAQMRLQKLHDVFVPGDKEPDASRNGDAFAELHYQGKSKPRVISLYTELTTLKKTDSESILDYVIQAETAATALRNADEAVSDMLLIAMVLKGLPSNFNTFSAIVVQRDKQMTFAEFKVALRSYEESEKSRNGNSETGENIMAMKNGERFDGVCFKCGKKGHKKSECWSKSGKNGNEKWCSRCRNKTHDTKECRSNMGRNDSVKKAEDQGRTKTENSEHTFTFKVSDSSGCGKSYSNNLLVDTGATSHIVNDKSKFISFDEDFDPNAHIIELADGSKAKVVTGKGVAKVKLYDVNGSSHDLILNNALYVPSYQQDIFSVNAAIEEGASISLDKHSKSFKSSDGAVFNIEQVGRLFYLNGISSSKNNAGTILEWHRILGHCNFSDIYKLENVVDGMKITSHKEVECKTCTQGKIREIGHLIREPMPPFDLVHSDLAGPISPGGKDGFNYALSFVDDYSGVIMIYFLKHKSDTGEATKQFLADIAPLGKVKCIRSDNGGEFIGQKFKSLLRENTIKHEACAPYSPHQNGTAERAWLSLFNMARCLLLEAKLPKMLWTYAVMASAYIRNRCFNDRLGKTPYEALTGIKPNLNNMYVFGAVCYAYVQGSKKLEPRIRTGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9IN69</accession>
    <name>A0A7D9IN69_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DZIP3-like HEPN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A073999</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007223">
        <property type="protein sequence ID" value="CAB4011656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9IN69"/>
    <dbReference type="OrthoDB" id="8062037at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041249">
        <property type="entry name" value="HEPN_DZIP3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18738">
        <property type="entry name" value="HEPN_DZIP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DZIP3-like HEPN" evidence="1">
        <location>
            <begin position="37"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4011656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="115" mass="12722" checksum="1D69CC0A1CD940C6" modified="2020-12-02" version="1">MASNDPQKRANFLRFSTLLVDKGTEALRMCFDAILPPANLRAVLNANKELLQASSLTRQMDLLFPPSGNRTDSKTFDIKLLSFLLRNICASLSPPALGWDTEPLATDCIVKKQIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9ITP0</accession>
    <name>A0A7D9ITP0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Plasma kallikrein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A062039</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S1 family. CLIP subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010039">
        <property type="protein sequence ID" value="CAB4018512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9ITP0"/>
    <dbReference type="OrthoDB" id="5974294at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00190">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.10:FF:000002">
        <property type="entry name" value="Transmembrane protease serine"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033116">
        <property type="entry name" value="TRYPSIN_SER"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24252">
        <property type="entry name" value="ACROSIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24252:SF7">
        <property type="entry name" value="HYALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00135">
        <property type="entry name" value="TRYPSIN_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4018512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="175" mass="19301" checksum="5FE5F07190C675E5" modified="2020-12-02" version="1">MRVKEGHEQDISIARNGITVHPQYNTRTTDYDIAVIRLSRSVQFTQRIKPVCFNRGIDFTGQRCYITGWGRLQSGGSTPKVLQEAQVPIVTPQECKKAYGSSLITDKMLCAGYSQGGIDTCEGDSGGPLVCQHSDRSWYLTGVTSWGRGCASAGYYGVYAYVAKLYPWVKQVTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J192</accession>
    <name>A0A7D9J192_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Poly [ADP-ribose] polymerase 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A042122</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010116">
        <property type="protein sequence ID" value="CAB4018671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J192"/>
    <dbReference type="OrthoDB" id="5982475at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036930">
        <property type="entry name" value="WGR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008893">
        <property type="entry name" value="WGR_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142921">
        <property type="entry name" value="WGR domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51977">
        <property type="entry name" value="WGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4018671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="371" mass="43579" checksum="AC2B27988B6F4F62" modified="2020-12-02" version="1">MSQAEAEKSFKKKFQEKTKNSWDERQQFTPVKGKYSLVIEKTDSSESSKVTESQKPKFPDVFVLQGVQLPVEVLHAIFLRLSVRDNLRYMQVCKAWKTLLSDKYFWKMYTQRHFDLGIKSDLSNEGPLAEWSGKSFIWEEELEHDHTWFCYFAEDRKDCDIYVMRPFPSIWNCRVVHPYGLDPLSGDARSLQGFSRSLEILTYMRSEAARLEMQSGNQCSLNEGLNDICAVIFPWDKKELPTPLELQKEIFNFHPQVYEYYPNNPEKNVGDLREDKIYFHVRSSDDDDEDDDEHDFEIKCLNSIFGMSYPTEDEQWMYEDSRKFYEWLQSIMCPSVFIYVGEEKFNPVGIFLLTHLAPGWVGGAMTAATWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9J5F8</accession>
    <name>A0A7D9J5F8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">---NA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A039257</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011922">
        <property type="protein sequence ID" value="CAB4022332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9J5F8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.533.10">
        <property type="entry name" value="Death Domain, Fas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011029">
        <property type="entry name" value="DEATH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000488">
        <property type="entry name" value="Death_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00531">
        <property type="entry name" value="Death"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47986">
        <property type="entry name" value="DEATH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50017">
        <property type="entry name" value="DEATH_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="93"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4022332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="354" mass="38596" checksum="7E48904DF134E952" modified="2020-12-02" version="1">MLQCQQCQSATCFTHQIVMGICKKDKPDTSRCTGCQKGYVMNTGATACVVDKQQKTTESDLSTVTTKGPTPSNKTDGETGLSVPKTGLSVVEIIVIVICSVVLIVVIIGLCLYCNSRNSRHIQRGKIDEESSSANTSTTLLNETKNEGNRTIILQEEDHHIGLFLSDGIHVKETTAGFVDSSQSNNAGNDVSGTVVGYTPPLNNFVANNGRAMPPASLMQNRRPEHALMQNNSQPESLILQRAPAAVTPNYLQVNDPHLTRFGGLSFQTYDEICVTFDAGPPGKDWRALAGWLVLKVEVVDQIGMKEDKTNQVIKTWAVKTKNTVARFVQILEEEKHGMTYLADKIKAELNIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JCI9</accession>
    <name>A0A7D9JCI9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A056667</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014219">
        <property type="protein sequence ID" value="CAB4026471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JCI9"/>
    <dbReference type="OrthoDB" id="6775763at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510:SF3">
        <property type="entry name" value="ENDO_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47510">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="282" mass="32215" checksum="1E86ADE18D1D51D1" modified="2020-12-02" version="1">MPVRLSKVLMYYRSALCMPLMIQIRKLISLNSLFRDCLDQHAPLQRTKISRPPAPWMKNCDIAQLQKDCQVLRVMSTTNNIDELSRSRYRDARNELKCKIKTAKRDFYQRAFSSKKPKEAWTIIHRILNPNPKPLRVDPDELNTHFASRSERVTGTTPEPTENLWAFIDTLPGDPVSALRLREVSYREVLSEIKSLRSGCSCGPDGIPVKYIKMVAEQLGLPLTHIINNCISKQLFPSPWKTARLCAIPKAEKITSKQRPPSYIHSSNLIQDLRTSGSSTNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JK32</accession>
    <name>A0A7D9JK32_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A080893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017377">
        <property type="protein sequence ID" value="CAB4031134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JK32"/>
    <dbReference type="OrthoDB" id="5984753at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="18780" checksum="8CD5C145AE4118C9" modified="2020-12-02" version="1">MDGLSLNDALEKGPCLMNSLFDVLIGWRQNEVAFAGDVSKMFNQIAVHPDNQKYHRFLWRDGETDREPDVYQWVRLSFGDKPAPDLAINAINLLADRAQVEFPEAARILKDHTYVDDVAGSEISPEKVKKVVDGIDTILGKGKFVTLPSKRGIATAQRLIKMVTRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JLP4</accession>
    <name>A0A7D9JLP4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A076251</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MSOX/MTOX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018084">
        <property type="protein sequence ID" value="CAB4032050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JLP4"/>
    <dbReference type="OrthoDB" id="5046242at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.9.10">
        <property type="entry name" value="D-Amino Acid Oxidase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045170">
        <property type="entry name" value="MTOX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10961:SF7">
        <property type="entry name" value="FAD DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10961">
        <property type="entry name" value="PEROXISOMAL SARCOSINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4032050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="430" mass="48756" checksum="5A47E3331C10C11F" modified="2020-12-02" version="1">MGLTSAYECPVKEGKKVLFLERFSEFANVHSSSVGYSRQFRVSYSEKNLSDLALKTYVMWENLKKEMNDDSLVQLTGCLWFGDASVESSEGNIDLAIQNLKALGEIEGKDYRVLEGKEAIMNSTEFAFISRAVVEIDNPEALFTVKGGTINVPGLVYHYVEALKIPNAMLINNARVTKIDYSNEEYVEVKVVVDGNEETYRGNKIILTSGAYVNEVFCTVHPPVDFRINLIIYLWCSTYFAEKHKPLPSGTDLATWPIWYFFGPKPKDDSTEASKDHNDYYGFPSEPERPQYLRVAPACTSQKEFDFMLFPPEINKRPLDKNALKFTSNFVDKFMPDLDPSLKEKEESTCVAGFAQLNENVHEKDEGAGFVIDFLLPESKLIVVFTGGWAMKFVPMIGKILTDLAIRGKNRVPRPHRANEYQTRSIGRRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JMB5</accession>
    <name>A0A7D9JMB5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Rhamnose-binding lectin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A084606</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020018277">
        <property type="protein sequence ID" value="CAB4032273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JMB5"/>
    <dbReference type="OrthoDB" id="1100386at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22823">
        <property type="entry name" value="Gal_Rha_Lectin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.740">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000922">
        <property type="entry name" value="Lectin_gal-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043159">
        <property type="entry name" value="Lectin_gal-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46780">
        <property type="entry name" value="PROTEIN EVA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02140">
        <property type="entry name" value="SUEL_Lectin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50228">
        <property type="entry name" value="SUEL_LECTIN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5043870827" evidence="2">
        <location>
            <begin position="17"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="236"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="332"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="238"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="334"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4032273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="453" mass="48982" checksum="3E4C9AFCB22D86EE" modified="2020-12-02" version="1" fragment="single">MLGVILAAGIIHLLQGEVGCTGLAGPNQIDLESEKAITVCTSQKRSLTCGSPGSSIAITDVFWGRQSRDICPSDDGDEHVDCGAAKETPGIVRGMCQGKAACQLEAKHKLLQNPESRHCPGVNKYLKVSYTCVPDAKEVTVCDGEETTLKCPASFKTFINSVFWGRQSVSVCPADNGISMCTGASESLNMLRKKCDGSEKCDITASFNQVQNGAENCPGTQKYLIVNYSCKPAGAKVEEDDKDNDDDDDDSDDKLTKPPGIKGEKVQLTNTENNRLGMGGLKALEKVNTLIKQSDGYSPNIIRSGGKLTDDQEKAIERMIIGGLENTQKKNVDVQGTTRTSIPKSHKAKAGGDMNKQIVELAKLVDEATSRINYKKAAVARPQTKANNQQSVVGTMAPNRTVKRLNVPRPVMPKIKSRAPMMNKVNTAPVQRANVPKQNAKRNFIYGKIMPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JPE3</accession>
    <name>A0A7D9JPE3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Retrovirus-related Pol poly from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A021980</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019703">
        <property type="protein sequence ID" value="CAB4033966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JPE3"/>
    <dbReference type="OrthoDB" id="413361at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GAG-pre-integrase" evidence="11">
        <location>
            <begin position="53"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="12">
        <location>
            <begin position="264"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="326"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="326"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF13976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB4033966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="406" mass="46263" checksum="6E2D548B5D00788A" modified="2020-12-02" version="1">MVLRNVLYVPNYEVNLFSVNRSVRFGHKFVFNKSEAKLTLNHGPQVNLTEDSGLFYLKITFQRSSACHSTTYNTNKASIKGGINLWHQRLGHLNKDDVKRTIGCKDNLKEVCETCALGKQSSKPVPKETQNKSQKVLELVYSDILGPFEVPSLSGSRYAITFIDEYSKHSIVKFMSKKSQAFENLKKTPQQNGVAERFNRTVVEMGRSLLIQAKLPKCYWVRALSTAAHIRNLTVTANSNQGKSLFELFTGKPPRRNQLRVFGCTAYVMKRKINMKKLDSRSVKAKFIGYDDKSTAYILQEFDSKKVIKARNVIFKENEIQSFSARETMSPDNPNLVSPNMDFEDDRSNDEATKIPVQARVGENDKTPVVQNPHQVEENPEEDEVALPRESRNRRPPGTIWITLHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JR55</accession>
    <name>A0A7D9JR55_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Ras RAS2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">PACLA_8A053565</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="10">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the small GTPase superfamily. Ras family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020539">
        <property type="protein sequence ID" value="CAB4034923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JR55"/>
    <dbReference type="OrthoDB" id="5976022at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000080">
        <property type="entry name" value="Ras-like GTPase Ras1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020849">
        <property type="entry name" value="Small_GTPase_Ras-type"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24070">
        <property type="entry name" value="RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51420">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="8" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0488">Methylation</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0636">Prenylation</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CAB4034923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="172" mass="19547" checksum="63DCD81B8DF70EC3" modified="2020-12-02" version="1">MSKEKDTERQYKLVVVGGGGVGKSALTIQFIQSHFVSDYDPTIEDSYRKQCVIDERVAHLDILDTAGQEEFSAMREQYMRSGEGFLLVFSLTDRASFDEINKFYNQILRVKDRAEFPMIIVGNKSDLERERVVSSGEGNETGRQLKIPYIEASAKTRTNVDAAFHDLVRAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JRJ0</accession>
    <name>A0A7D9JRJ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PREDICTED: uncharacterized protein K02A2.6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A023516</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019822">
        <property type="protein sequence ID" value="CAB4034105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JRJ0"/>
    <dbReference type="OrthoDB" id="775972at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000063">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF11">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="147" mass="16712" checksum="3218149DF6A7F246" modified="2020-12-02" version="1">MPEGPWEVLHTDFYGPLPIGEYLLVVIDRYSRFPVVEIVRSTKASTMIPKLDKIFATHGLPTVIKSDNGPPYNSQEYRRYLEALGIRPEFSTPYWPQGNAEAERFMQPLGKALKTAQIQGCPWQQELNRFSLQYRTAPHSTTGVSPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9JY41</accession>
    <name>A0A7D9JY41_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Poly [ADP-ribose] polymerase 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A052786</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020022806">
        <property type="protein sequence ID" value="CAB4037178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9JY41"/>
    <dbReference type="OrthoDB" id="406099at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010629">
        <property type="term" value="P:negative regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01439">
        <property type="entry name" value="TCCD_inducible_PARP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.228.10:FF:000008">
        <property type="entry name" value="Poly [ADP-ribose] polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.720.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052056">
        <property type="entry name" value="Mono-ARTD/PARP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057049">
        <property type="entry name" value="PARP14_KH_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012317">
        <property type="entry name" value="Poly(ADP-ribose)pol_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004170">
        <property type="entry name" value="WWE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037197">
        <property type="entry name" value="WWE_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453">
        <property type="entry name" value="PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14453:SF67">
        <property type="entry name" value="POLY [ADP-RIBOSE] POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23254">
        <property type="entry name" value="KH_PARP14_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00644">
        <property type="entry name" value="PARP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02825">
        <property type="entry name" value="WWE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117839">
        <property type="entry name" value="WWE domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51059">
        <property type="entry name" value="PARP_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4037178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="366" mass="42514" checksum="24DC16C5AA5E1D2A" modified="2020-12-02" version="1">MIKEELKQVEQSHLERTIKLWQKFDERQLAEILEVQDLYCVRIECEPAIGFIRISGLAKNVPNALREIHRIIHDLDATVREVQWFYYETNANFVIPEKYADSMSAKIERAYKNDPSGSVVVGEEMKVEIDFKTMTERCLDPTENEKMKVYRRPCEAFPFPPNWEFQPIDCSTGKELEVHRFTIDQQSQEFDQIHGMFKASMSMSMALANAEIVKIEKIQNPGLHQIYEEQKKKMSNGGNEMRLFHGTAKTAVENINTTGFNRANCEKTAVKFGKGVYFAKQAWYSVRNIYSVPDEKGLQYMYIARVLVGKYTKGKEGLIMPPPIDAENNQIVRYDSVVDNVINPLMFVIFFDYQSYPEYLITFKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9K0L6</accession>
    <name>A0A7D9K0L6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A010786</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020024812">
        <property type="protein sequence ID" value="CAB4038975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9K0L6"/>
    <dbReference type="OrthoDB" id="382863at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053347">
        <property type="entry name" value="Axonemal_MT_stabilizer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37404">
        <property type="entry name" value="HCG1796489"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37404:SF1">
        <property type="entry name" value="HCG1796489"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="233" mass="26877" checksum="7E5067AA6A3C1213" modified="2020-12-02" version="1" fragment="single">MPFFQRSTLAPLPPSVSKGLHQPSPYVTTTGSTHDHKFHESPLLQPGYKKAPSSWKVQYVEDSISTLKVKPWRRPLTMGNQSSEMKDKYKGEPEVTLETRFNERFQPPKLHDHHVNGPSKDLVRSTQNVEASGRVYYPKDRGVLSYHGDMYLTTTQRDHRRFNKQELGEYAKKDYATFWECEEYPKAWGHGSKENPLPPHSVPRSDRPMRDETVFPTATTIPRLPKSLKPVPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9KYM7</accession>
    <name>A0A7D9KYM7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A038598</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011839">
        <property type="protein sequence ID" value="CAB4022166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9KYM7"/>
    <dbReference type="OrthoDB" id="65445at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4022166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="201" mass="22765" checksum="15464EC2EF9CCB96" modified="2020-12-02" version="1">MARMDLNKLKEKYNLREPERGDLDDTTIVWRSGKPDYAKANLAFLKGKTQNHKADVGFQNPQERAMLMLSGNSEYNVPADIEMQMFGDDQRSGSLATESNNKLPNSTNDNKDNDGKVNYETTPLSINGNSSIHEISIVETNKESSKENYKPWDQLIVSNNQRHNQNSLQQTNLISPQGFDQVEPNCDSNQCSTNRIHNICK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L2U6</accession>
    <name>A0A7D9L2U6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Large ribosomal subunit protein uL14m</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">39S ribosomal protein L14, mitochondrial</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">PACLA_8A085657</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="9">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the universal ribosomal protein uL14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020011945">
        <property type="protein sequence ID" value="CAB4022377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L2U6"/>
    <dbReference type="OrthoDB" id="274765at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00337">
        <property type="entry name" value="Ribosomal_uL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.150.20:FF:000018">
        <property type="entry name" value="Ribosomal protein L14, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.150.20">
        <property type="entry name" value="Ribosomal protein L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01367">
        <property type="entry name" value="Ribosomal_uL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000218">
        <property type="entry name" value="Ribosomal_uL14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036853">
        <property type="entry name" value="Ribosomal_uL14_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21037">
        <property type="entry name" value="39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21037:SF3">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL14M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00238">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01374">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50193">
        <property type="entry name" value="Ribosomal protein L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0809">Transit peptide</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00040118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00042938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CAB4022377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="166" mass="18444" checksum="EBB2FD3722AC4B45" modified="2020-12-02" version="1">MATCQGASCFGMIFSSLNYGFYRRLIPQSCNILGGGFSKQGMLNSSRSITLLTKFNVVDNSKQGQRTKRYKKAYAIGFFKNNKRQTADIGDVIKVAVRGQTCNALIVGSRKPKGNNMVPRYDNNNVVLLDENLAPLGTRIRGPIPNILRKQRDKYSKVLAIASKFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L3M0</accession>
    <name>A0A7D9L3M0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A073645</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013289">
        <property type="protein sequence ID" value="CAB4024888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L3M0"/>
    <dbReference type="OrthoDB" id="5984802at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006580">
        <property type="entry name" value="Znf_TTF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF21">
        <property type="entry name" value="DUF4371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00597">
        <property type="entry name" value="ZnF_TTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4024888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="455" mass="52130" checksum="248CF188812BA029" modified="2020-12-02" version="1" fragment="single">MAEASVPQDLSSYEYEPSCPLPSGREARDHVISKGPCQPRDINFPLDNRNRKFLVSWYEKFPWLEYSVSLDKAFCFVCRVFNAQTSSRSEPTFIKTGFSNWKKSEVFAKHEKSDCHKHSLQAHRHWKSQKPIHHQIDEENERQESYRQQNVKKNRTVIGKIIDVVRLLGKLNLPFRGHREDKNSLNKGVFKEFLEHIAKSDSLIEDHLRNSAENAKYTSPEIQNQLIKVVGSAILDEIIRRVKGAEMYAIIADETPDLSKTEQLTVLVRYVWNGVIEERLLAVEPMEETTAEALFHTIREKLQQCGIEFSNMRGQCYDGASNVSGIHTGLQARIKEISPSAIYTHCYAHVLNLVIVDTMNDEGKKKREYVLKKLSDTRWACRADSITAIYHTLEAAIATLKEIRENEKKAHIAAEAKGLFQNVCDFEFVLALEVLKKVLLLSKGVSDKLQSEDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9L3Q3</accession>
    <name>A0A7D9L3Q3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A002737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020013432">
        <property type="protein sequence ID" value="CAB4025134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9L3Q3"/>
    <dbReference type="OrthoDB" id="5973657at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751:SF42">
        <property type="entry name" value="PROTEIN CBG10204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31751">
        <property type="entry name" value="SI:CH211-108C17.2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4025134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="505" mass="56887" checksum="12B64070CEDC754E" modified="2020-12-02" version="1">MERSTKATKSTQTFLTGESLSKLLMPKKPIMISPCSQTDAIDTDAERLVPNCGKMTHDCLNVVVDVIELPKQPEAIEFENSDAVQQSVGESDCENSSYEEFMATSDYDSELDEDSKEHDEPIMLTSTKSIKDQLKFIICEESIVKTFSVCMECGNQCSLFIRSRVGSCCVICIACTSSAAHNISWSTGPLMNRLPALNLLIASSIRSTGMECNKTLRFMESLNILCFKRRELSNIQSGYVIPAVFNVWKLKQQKLLIGIKNKSIIKASDMRVDSPGHSGLLRAGSTHDVERNVVLDTQCGSGHSSCKESLKRQLTYLEEANNKVKKLVTDRHVQVSAYMANEKPAIDHKYDVWHVAKGAKKKLLKATKNRNLRPSNLGWGLFCSNMQFNENSKGDQAKTKQGDDRWFVVYPKAFKGEKPIARQVKECPTFSYIQEIQLESLELRQKYRTLKKAKLHAMEVRPKEPMSFVEKYQSGNQPESKAPIDARRHSRFPQPAYPEGESDII</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LCQ5</accession>
    <name>A0A7D9LCQ5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Synaptotagmin-7-like isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062041</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017592">
        <property type="protein sequence ID" value="CAB4031395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LCQ5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030424">
        <property type="term" value="C:axon"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070382">
        <property type="term" value="C:exocytic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098793">
        <property type="term" value="C:presynapse"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005544">
        <property type="term" value="F:calcium-dependent phospholipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030276">
        <property type="term" value="F:clathrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001786">
        <property type="term" value="F:phosphatidylserine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000149">
        <property type="term" value="F:SNARE binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048791">
        <property type="term" value="P:calcium ion-regulated exocytosis of neurotransmitter"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006906">
        <property type="term" value="P:vesicle fusion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10024:SF369">
        <property type="entry name" value="FI18813P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10024">
        <property type="entry name" value="SYNAPTOTAGMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4031395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="292" mass="32725" checksum="1366A00B0D7AEFD2" modified="2020-12-02" version="1">MSSDVALTALTVALSVATLLACLVLAVIFYILRRKRHNKLTVTKPLLKTTPIPMSSGLLKLRTDYSERFYSDSEDSGAVINRWNGHHTDDSIGDDLSDCEYTGRRSSSILSVSSSDNWLLSSYEDAANEIRTPGSSASNSPNISARLCFLNLSVKYNFHQESLDVVIINITGPPKQKSGSKGLFIIAQLFVTNENGEDEDFNTMNKTEVKNYSSNVLFNEEFKFEALQSYQLQAISIRLSLCSHDRFSRVQRLGEFIVNLNEVTFDPAQPLVLQRRLSQVRSEIITYIYVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LRU2</accession>
    <name>A0A7D9LRU2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A010296</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025215">
        <property type="protein sequence ID" value="CAB4039325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LRU2"/>
    <dbReference type="OrthoDB" id="5972212at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027806">
        <property type="entry name" value="HARBI1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34615:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13359">
        <property type="entry name" value="DDE_Tnp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4039325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="314" mass="35682" checksum="BEA148C182B24E5A" modified="2020-12-02" version="1">MQLQYMTNDECRSDFRVDLADLAVLAEALRIPEKFVCPNRTVATGMEGLCVALRRFAYPCRFSDMIPRFGRSVSELCLIASEVTDHIYNTHGYLLTDLNQPWLHPDRLQEYANAVHDAGGALENCWGFVDGTVRPICRPGENQRVMYNGHKRIHAIKFQSVVAPNGLIANLYGPIEGKRHDAGMLRMSGLLDQLDQHCNTPLGDPLCIYGDPAYPLRRHLQKPYQHPNLDERQLEFNRSMSSVRVSVEWVFGDIINYFKFMDFKKNLKIGLSAVGKMYSVCALLRNALTCLYGSTTSSYFGVDPPTLQEYYQLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9LUK6</accession>
    <name>A0A7D9LUK6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A074061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020025380">
        <property type="protein sequence ID" value="CAB4039433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9LUK6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4039433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="58" mass="6720" checksum="2E2D1DAC107C8536" modified="2020-12-02" version="1" fragment="single">MTIKKAWKTVNKILNRKQECREINCNHTQNGQISCPNELAEHFNNYFTDIGPKIATTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M440</accession>
    <name>A0A7D9M440_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A015670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020031716">
        <property type="protein sequence ID" value="CAB4043177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M440"/>
    <dbReference type="OrthoDB" id="5967537at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="457"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="457"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="481" mass="53053" checksum="520C35C4CBF60C62" modified="2020-12-02" version="1">MAERTDNPSYSIMTINMNGPSAGVGTAKGRRDFLSRIFKLYPSDIVFCQETCPGFKELMPAPKNFEVVKKGKEAAVIWSTKHFSGSQDGIKTTNKQIRTKLEEIRKENEDAGDLISRIAMVKLTPTPRQETTKSILAVSFHGPHNKFKGPQADEKKKKFFKSLLKFLNKIEETEDNKDIGSYIIGGDFNFDTTIDLNSIDTKESVIEAIDSNSKVTKDSVIKAIDLSMVTKESVIKAIDLNSIVTKESVIKAINSNSIDTRDSVIKAIELGKDTKKNAIKAIDLNSKVTKKSVQKVIDSNSKVTKESVIKAIDSNSIDTKKSVISAIDLYIDTKKSVIKAIDSNSKDTKDSVIKAIELGKVTKESVMEVIDSNSKVTKESVMEAIDSNSMVIKDRVIKAINLSIDTKKSVIKAIDLNSIVTKDSVIKAIDLNSIYTLDTEKSKLLDHDPIVGKLHFTPQTEEGSQSEGNSPPEEGARHLNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M787</accession>
    <name>A0A7D9M787_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A043345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034338">
        <property type="protein sequence ID" value="CAB4044235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M787"/>
    <dbReference type="OrthoDB" id="447743at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="89" mass="10328" checksum="3A1FCB35C880FE4D" modified="2020-12-02" version="1" fragment="single">MATVVYNYFSENFGYVNNHNDVQYQRRYESFSTKDLKKSLKKLKLENGDILEIKFVAKKLRNLLNKSNTTDPNNTDSHASANIDHDSLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9M843</accession>
    <name>A0A7D9M843_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Caspase 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A007981</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the peptidase C14A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020035264">
        <property type="protein sequence ID" value="CAB4044522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9M843"/>
    <dbReference type="OrthoDB" id="5951217at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004197">
        <property type="term" value="F:cysteine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029030">
        <property type="entry name" value="Caspase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033139">
        <property type="entry name" value="Caspase_cys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002398">
        <property type="entry name" value="Pept_C14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011600">
        <property type="entry name" value="Pept_C14_caspase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002138">
        <property type="entry name" value="Pept_C14_p10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001309">
        <property type="entry name" value="Pept_C14_p20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015917">
        <property type="entry name" value="Pept_C14A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10454">
        <property type="entry name" value="CASPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10454:SF210">
        <property type="entry name" value="CASPASE-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00656">
        <property type="entry name" value="Peptidase_C14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00376">
        <property type="entry name" value="IL1BCENZYME"/>
    </dbReference>
    <dbReference type="SMART" id="SM00115">
        <property type="entry name" value="CASc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52129">
        <property type="entry name" value="Caspase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01122">
        <property type="entry name" value="CASPASE_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50207">
        <property type="entry name" value="CASPASE_P10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50208">
        <property type="entry name" value="CASPASE_P20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4044522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="223" mass="24956" checksum="A230B3CE9FFFBC3F" modified="2020-12-02" version="1" fragment="single">MYYPMKQPYGFALIINIKSFDGRTDKDVELDERTGSDVDVKKLQDLWDQLGFEVRTHVDLKAHEIYGVVRKMANADALQNSSCFVCCIMTHGDMGVVYGSDSKSLDIKDIIDLFKQDNCSALTEKPKLFFIQACRGCQGSPPGMPEIKPTPELDASALSEADGDVDCDHINDSTFSRSADPSEAHFLIGYSTVPDHASFRNVKIGTWYIDALVEIFSHYHKDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9MBQ0</accession>
    <name>A0A7D9MBQ0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ras and EF-hand domain-containing homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A070005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020042754">
        <property type="protein sequence ID" value="CAB4045876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9MBQ0"/>
    <dbReference type="OrthoDB" id="9989112at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08477">
        <property type="entry name" value="Roc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="149" mass="16495" checksum="5DE5B686B77223A2" modified="2020-12-02" version="1" fragment="single">MIIIDDDDDDDDDDDGDDGDDDGDDDGGDDGDDDVGVSEAEKQRTEQEFRSHKANMVPQLTAQNGQSQVPQASDEQDGRKIPLSPRTSPAGTETEVQTEDYQTSLKPERVSNIQRVYKVVFVGDSGVGKSSFIHRYCYEIWKPSYTATI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FQ30</accession>
    <name>A0A6S7FQ30_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HMG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A084013</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000090">
        <property type="protein sequence ID" value="CAB3978129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FQ30"/>
    <dbReference type="OrthoDB" id="6006485at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039598">
        <property type="entry name" value="HMGXB3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040648">
        <property type="entry name" value="HMGXB3_CxC4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17609">
        <property type="entry name" value="HMG DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17609:SF3">
        <property type="entry name" value="SAP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18717">
        <property type="entry name" value="CxC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMG" evidence="1">
        <location>
            <begin position="453"/>
            <end position="550"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3978129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="956" mass="109117" checksum="679EAF00FDAE0DCA" modified="2020-12-02" version="1">MDTLGKDFDAELQTAKNIITEENHDIHRLEGGDSTIEAQEELKKKKADCRPGFNVAFDNIDMEIKTKNMTMVNQNKDIHWTNHRMVINRVSGNSHSNKGQKGDLSKISNLKFLPSHNDMKSQRFNYIILVSRILVECFDAFYQLKDVCIYHIPHKFSKEMSQKSRKESTATWTQRGQGSCSGCGWKYHCRYKPFHCPECNNELGGSYVPKKKKRPLVPKCTLVVQTGEVCIYSANTSTHDDRCLVIKQDKSLMCHHNICKQKRAIHINSQNVEDFNCNHLEKIQECTTPLKTFQKLLDDLYPCDENTRASLNELAAECKEIGFPVAIHVSPTMYCVFGRATANDAAGYRHVRVTDTEIKCCSKDCKSSMVRGKQQKSRRICIHIHVLLSLGICKGSENADDPLEQVPSSSEDSGNLMPRKATIDLKMKRTLPYRIPLAIIQQAGKMDAHPSGWQWTFEPEQKTCDLCNGELSHSKVHPGKRGRSVLITNMHPFKTVEIYVKTCSNCSAMHQVFPYEFGLFNICDKVLVSFEILLEWRRLFRRGVPISIAIKSKLEAMVERVEESPTKNELENIATHLYNGFYCFEAITERNLDDGICGICGVIGEVYFGDGNEKNCCDISEIEYKPKNDEESAETGSTSLEDFLEMLKRRWIECTTYTRSAKFKTHFSDIPPVIAPAMKGPVIINSEAEKKSSFLKQHGKPNEGDLALLHHNICSKSIDMSKIKELDINSLKQLCQLCGISYSSIEVSNVTRIGRDPVDLYLSFGYVPLVFLCDTACGFVRHLECRDKNTSQQLWGKFRGCFEEPSLDKSPDTGMNVPLLSTAEYRLENVETIQSSDTLIHPCTGSSRRYVLGDRFHTANNPHKSPLCEYHNINLLEQSNSIKTSYQESENNRKNVRRLRSSCMQNFSTHFFYNYLMDFYQNTEIVREQYDIACKQLKTGQKVCRNAYMQFVIMDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7FUD6</accession>
    <name>A0A6S7FUD6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TNF receptor-associated factor family DDB_G0272829-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A037659</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000073">
        <property type="protein sequence ID" value="CAB3977821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7FUD6"/>
    <dbReference type="OrthoDB" id="6436613at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043122">
        <property type="term" value="P:regulation of canonical NF-kappaB signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001293">
        <property type="entry name" value="Znf_TRAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131:SF157">
        <property type="entry name" value="RECEPTOR-ASSOCIATED FACTOR, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10131">
        <property type="entry name" value="TNF RECEPTOR ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13923">
        <property type="entry name" value="zf-C3HC4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02176">
        <property type="entry name" value="zf-TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00612">
        <property type="entry name" value="Kelch"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50145">
        <property type="entry name" value="ZF_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3977821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="514" mass="58107" checksum="B8001A82E12B09B3" modified="2020-12-02" version="1">MGQIYSFLGHGNTARNNINQEALLLGEDFSCKICLEVLHDPVQCQNNEHYFCRKCVTKHLGNSETCPLCMEQLTLETLRPPSRIVASVVSQLKKPRCSHVSRGCEENGTIEELMLHEQTCGYAPVVCSNKGCKETVNRRDKESHEMEECKFRKITCESCDKELVYVEYYKKHQCSLRLRKEIDEIKLRFDAKPEFLKQSVATRTKHKVKLATSAERVHSKKQSNRQARPTKNSTTICGETNVAVNGKIFIFGGGDNDEIGKSVEIFNWSTKTWTLIKNCLFFQRWCSFSFLYGKKIMVCGGYCTERIEYLNPSESGQNATVATVSLLRNAKCAGLLHKDRILTFHESVVETSLDSPGESRTLLKEKQDRNLSARVHCFGNNIYIVGGIESSMEKYDVLKNEIKTLPFLPYTVSDMATVAYKDNIILIGGYDDEKSLDDVVMFNVTNQEYTKLPSLLEKRYHCAAVIMGNTIVVMGGVDDDALKTVEYYVIGDSAWQKLPAMNLARHGATACVYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7G4I4</accession>
    <name>A0A6S7G4I4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A065812</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001051">
        <property type="protein sequence ID" value="CAB3986655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7G4I4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3986655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="112" mass="12112" checksum="BAFFFAFFA5B9CFBC" modified="2020-12-02" version="1">MVKENAFPTVNADVCIISSGCSPETNNSHENVNQPTVDSDLDPPVSEMNNHSKESIEAVQLSISVTKERAATPITQATNDNSNIEPNVGKSFVLACTSTTEQYRMVRSLTVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDH6</accession>
    <name>A0A6S7GDH6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A051973</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001162">
        <property type="protein sequence ID" value="CAB3987362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDH6"/>
    <dbReference type="OrthoDB" id="5989205at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13975">
        <property type="entry name" value="gag-asp_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3987362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="148" mass="16326" checksum="633AF1EDF6C7B560" modified="2020-12-02" version="1">MGENKQRKQQAKAVGISQSEPNTESSEEEDYVINYVYTVSQETREKTHATVKINGQDVLFLVDTGATVDIIDSTTYAKLKRKSSLRKSSTKIYAYGFHTPLPLNGQFQATLESKKRYTVSQIYVIDGAGGNLLCAKTAQDLVGLGRAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GDJ4</accession>
    <name>A0A6S7GDJ4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcription factor SOX-7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A058421</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000607">
        <property type="protein sequence ID" value="CAB3983400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GDJ4"/>
    <dbReference type="OrthoDB" id="6247875at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22032">
        <property type="entry name" value="HMG-box_SoxF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.30.10:FF:000002">
        <property type="entry name" value="transcription factor Sox-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050140">
        <property type="entry name" value="SRY-related_HMG-box_TF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270">
        <property type="entry name" value="SOX TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10270:SF317">
        <property type="entry name" value="TRANSCRIPTION FACTOR SOX-15-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="121"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="122"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB3983400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="363" mass="41841" checksum="3BC107928BBBA303" modified="2020-12-02" version="1">MRKVHHNTEEYTTFIYNKMSKAYELMSLARSSAGFYSSEIVHNQSNSILQESEKKNMNLNKLVNSWSDCSSNTRIDSLAEQKIKSEFKLRNTMDAQRGRMNGTKRWTDQLGSGHVARDMSESLANSEPMQPDQNEKGEHIRRPMNSFMIWSQHERRRLAEENPDLHNAELSKILGQNWRALTVEQKRPYLLEAERLRVKHIQDYPSYKYRPKRRKHPKRVCKKAMVKTPASSNVGLKPMLQNLPLANVQQSCDNSCKSPSGTAPKPSTNLPPFCPLTPESSPNIQKENTVFNFDVSKHEPKRMTCEYSLPATPPTCSQANDDPYHFASLDFLNTEDFNLQTYILGEDMSVLDRDEFDQYLGQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GHA7</accession>
    <name>A0A6S7GHA7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A057482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001309">
        <property type="protein sequence ID" value="CAB3988346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GHA7"/>
    <dbReference type="OrthoDB" id="6780615at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3988346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="104" mass="12135" checksum="3AF149FADFAA4AF5" modified="2020-12-02" version="1">MERILHTQLYEYLTANNLLSEHQYGFRKFHSTASALLDCTNDWYINMDKKLFNLAVFVDLKKAFHTVDHEILLEKLMLVGITGNALLLDLLLKSYLTDRTQRCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GK30</accession>
    <name>A0A6S7GK30_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A006397</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001507">
        <property type="protein sequence ID" value="CAB3989546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GK30"/>
    <dbReference type="OrthoDB" id="5984144at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029491">
        <property type="entry name" value="Helicase_HTH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14493">
        <property type="entry name" value="HTH_40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3989546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="99" mass="10960" checksum="E9D9AABE36FBDEAB" modified="2020-12-02" version="1">MFMKSHSSIKAIAKFLQVETPTAEVYILDAYCAGAPISVEKLASELNVHKPLIDRIAGHIEDGVPTLRQIKDDLDAEVSYNQIKVVLAAMIHDELDELI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GLS7</accession>
    <name>A0A6S7GLS7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A016460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001642">
        <property type="protein sequence ID" value="CAB3990326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GLS7"/>
    <dbReference type="OrthoDB" id="5989638at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33845:SF1">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3990326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="608" mass="68749" checksum="8BA809BC36717363" modified="2020-12-02" version="1" fragment="single">SDIVQCPTEKAQNRSHVDEQYLRESSEDLDDTEFDSQLAVEESHQAECNGLLLVIFSPTLLNNHLTIILASYQTVNFFIDFKGIEYDEEPSTSTPKGKLNCFLAARDVSPIRTSMMTPWEEAAGRTKRHYLWKARQVVFATLGEIAPNNSEMLFRAIKERQLDENDNTDCMLLEALTACYENASHWSSRRQILSIFADKKHIRIKVPPEKLDHFLAFITSARVIQDLPFGEKTLKLSTTEIKIPNVIRNSIPEQIIQQYQSYSEGGRAFDDMVTVVDKLGDVYELGLTWSKEQIRKPKLAKHYFKSDYKVHVSSTSRVPDHCRPYALSLANDSNFTTTCNHQHDLVCDRCNLFPAVVQELELQVEKARIPHKDKEEMKFVVAQSKKNIEAWKAHILRFINQDEARLDILKAVDDSSVLVVLDWAMKFIPRKYRESQADWFGKRGLSWHISVAMKKPPGKTLQTLTLVHVFQKSNQDSLYVLAVIDDVIEKLKTAIPGLKSVSFRQDNAGCYHSAATILGIHQLAIKHNVCVRMDFCDPQGGKGPCDRKAASIKNHMRSYLNSGHDISSAQDMKSAIESNGGVRGVATILCGPLTCPTMDAALLSRFSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GQT2</accession>
    <name>A0A6S7GQT2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A042170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001103">
        <property type="protein sequence ID" value="CAB3987000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GQT2"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3987000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="137" mass="15646" checksum="5134B643268B897B" modified="2020-12-02" version="1" fragment="single">MAEIMKDDDTDMETDVTDPIMERKLLGPEDDNINPNTYTNNETQNSSDSTGMEGLTQKTPEITYKHSPSNALNNNNLDTNRIRDIINSIPDNLDRTFRALNNHKFNLQKTNILLDKLEQHKEMNTSPTGLIPKVECR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GVT7</accession>
    <name>A0A6S7GVT7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ER membrane protein complex subunit 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">PACLA_8A057538</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="13">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="3">Component of the ER membrane protein complex (EMC).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the EMC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002388">
        <property type="protein sequence ID" value="CAB3994086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GVT7"/>
    <dbReference type="OrthoDB" id="28092at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072546">
        <property type="term" value="C:EMC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034975">
        <property type="term" value="P:protein folding in endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058545">
        <property type="entry name" value="Beta-prop_EMC1_1st"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026895">
        <property type="entry name" value="EMC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011678">
        <property type="entry name" value="EMC1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21573">
        <property type="entry name" value="ER MEMBRANE PROTEIN COMPLEX SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21573:SF0">
        <property type="entry name" value="ER MEMBRANE PROTEIN COMPLEX SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25293">
        <property type="entry name" value="Beta-prop_EMC1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07774">
        <property type="entry name" value="EMC1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="EMC1 first beta-propeller" evidence="12">
        <location>
            <begin position="29"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="domain" description="ER membrane protein complex subunit 1 C-terminal" evidence="11">
        <location>
            <begin position="775"/>
            <end position="980"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF07774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF25293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CAB3994086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="981" mass="111595" checksum="FE32FBAF8B971B46" modified="2020-12-02" version="1">MAAVYLQFMRLILLYLFLSILLFSLTYCLYEDQIGLFDWRKSFVGKLNYVHFDGSAANNKRIIVSSEENVLAAMNSRTGNLIWRRVLERSNNTIDKLLHFSDNMISLSGRGKFLRCWDPANGNIIWENTLGIDDSLEEKASLARGLKSVYALVSDKHSENIFVIAGNNIRAFSIASGKEIWSKEENRDLFGLMFHVDNLYTVGSENDKIFMQQLNIKTGNEENSHAVLAPWLFHKETSCVFISNVVVCADPVEKIVHTLQLRSEGISLQSTPISSLSSLDVRNIDKLTLYLPHSLSITQSQREFVLKLNDKHSMLLKLDKESSILLLKEYNEEMLFHTSSIGGDVLLMTAVLSGSSMELKCYNIDTMSEVEDMRQTLSFHEHHGKPVNIYTHFFLRKDNTIGFRVLTTFEDYSVILSQHTGRVFWTREESLAAITAVEMVELPVSPQQANFEALQREFGYHHDGKVFSMFSQRIQAQFQQFQAFVASLNIERDENRGDNEDEKNGEELTRDQFDLRKIIVVITASGKLFGLDTIDGSIIWQRFIPDMAAFVPNGKSLLYMQRSVAHFPLAPQCVVVGRSRSGQGSVLFTFNPSTGKSIDPDTPHGVRLPYNILQTTLLPYHDDKFSKLLLVVDTSLNVHIFPNNEKATSIIKARSKSIFIHIAGKTELKGYVVSAESEQLRLEDVWKVQLSPSEHIIDQTVFKRLGEHVHSPGRVLGDRRVLYKYLNPNLMAVVTRSPSDSKPAVHIFLIDSVTGNIVHHCRHRNAQGPLQVVHSENWIIYNYYNTKARRHELAVLELYEGYQERNSTAFSSLDPPISPMILQQSYIFPFNVDSMTTTITNAGITKKTLLIGVSLGYVYSLPKMFLDPRRNLTDSPKLREEGLMPYIPELPLITTSFINYNQTVSNIEGIYTSPAGLESTCLVFTYGLDLYFTRVTPSRLFDVLKEDFDYWFISVTLIILAMVTLVSARLASVKVLRQIWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GW01</accession>
    <name>A0A6S7GW01_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">CCDC113/CCDC96 coiled-coil domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A049717</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell projection</location>
            <location evidence="1">Cilium</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002439">
        <property type="protein sequence ID" value="CAB3994329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GW01"/>
    <dbReference type="OrthoDB" id="10254794at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005930">
        <property type="term" value="C:axoneme"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036064">
        <property type="term" value="C:ciliary basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0060271">
        <property type="term" value="P:cilium assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051885">
        <property type="entry name" value="CC_CF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025254">
        <property type="entry name" value="CCDC113/CCDC96_CC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15654">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 113-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15654:SF1">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 96"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13870">
        <property type="entry name" value="CCDC113_CCDC96_CC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0966">Cell projection</keyword>
    <keyword evidence="2 4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CCDC113/CCDC96 coiled-coil" evidence="6">
        <location>
            <begin position="327"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="486"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="227"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="340"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="42"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="71"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3994329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="544" mass="62327" checksum="45AC6A34EE3E91C9" modified="2020-12-02" version="1">MADENNTTEAKISEETNLTTAENVEAPRRPSIAIEDVDFGNNADNSNVESSEQPETQVVVGEEAGVSSDGNEQNNQQQNERTPDMMDNASAEERPSTTENSVEPEKEDGPLLETVAQPLSREASIVLEQQPADGMVASMTEIPDPAQTPPVVIVDDAILNNFDDQPQIVNILSPYDGETQSIASSIEVPVYNRVELLERYQQAVEERSALQTLNSQFQHKLAEYFKKKKTDDRQQEIEKNVSDQEQRYIKYLANLDELQSDLTGEQESYKEQIEELKERCSEKQFKVQEVRNEFLKHKTDMAKQALNSRSGRPIPLKDIEQYQQLEQKKDHEVMLVRLENIKLKNRLKKREIQLKAKEELAEGLHLIDFEQLKIENQTYNEKIEERNEELLKLRKKITTTVQVLTHLKEKLQFVQGENGEQRSTLKTVDANVAQKRDILTRTKQARDALRIDNVKLRQKCGLLGNEPLLRDYEERKDESYLSLRQQCGHNDGAEEGPIFSKTRRNIPGSTNLSVTMAFQQQMPYGPFSMEIRSKVIAIRLVKET</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7GXW7</accession>
    <name>A0A6S7GXW7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Partial</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067841</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003298">
        <property type="protein sequence ID" value="CAB3998204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7GXW7"/>
    <dbReference type="OrthoDB" id="5945417at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051941">
        <property type="entry name" value="BG_Antigen-Binding_Lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713:SF6">
        <property type="entry name" value="F5_8 TYPE C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45713">
        <property type="entry name" value="FTP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00024">
        <property type="entry name" value="PAN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00473">
        <property type="entry name" value="PAN_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57414">
        <property type="entry name" value="Hairpin loop containing domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3998204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="584" mass="65723" checksum="EE5955683C39C1C9" modified="2020-12-02" version="1">MGFILGNNADHQSNNIIRKHNVHQASDTCNVAKRGRYLSIDHEEIGVLSICEVRVLKLPFDQIGYGKPVEVSKRETTTDPNYGRRDQLSDNQLIFDTFSDSMPNPWIRLDLEDSYFIRELGIFCHPTVAQLVDLAIKIGHSLVDGGRANPSCAEHQNIDYSGGKAFFCRMKGRYVVLTLEKVTTRLRVHEMVINPTHQQNHAESLTPEIFPATCTTGVSGFCWTNRLTDNVPEPGGYVTTVGNNGNWLRLNLGMATSVGKIMIANVVPDPYKEQLIDFELRVGDSLDNNGNSNPLCLDGLQSMLGKKIESFYCSPPVTGQYVNLNQRTTDKRLILSEIAVYSDFEPKMKDRFGKERQLWRGIGESIVLSCEAYDQPTPVVSWIKDGVILVTDSSTLEINSATVEDSGVYECWANSTLGEEYMPFHVNITSDVRPCAESIEIELDLGNLETSYPEIFGNKWYRFYDTTSNNYLKEKPNLAALTKSNHSDEDVRPRPAISMKVKADHALFNHILLTETDIQDSSQCMIMCALKSTCQSFNYSDKEKVCELNGSTKQKHLEDFLPRVGYHYFMKGKGVVNKRFAGDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H392</accession>
    <name>A0A6S7H392_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Opioid-binding cell adhesion molecule homolog isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A014849</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003356">
        <property type="protein sequence ID" value="CAB3998445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H392"/>
    <dbReference type="OrthoDB" id="5989357at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005911">
        <property type="term" value="C:cell-cell junction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050839">
        <property type="term" value="F:cell adhesion molecule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098609">
        <property type="term" value="P:cell-cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00096">
        <property type="entry name" value="Ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051275">
        <property type="entry name" value="Cell_adhesion_signaling"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003598">
        <property type="entry name" value="Ig_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11640:SF31">
        <property type="entry name" value="IRREGULAR CHIASM C-ROUGHEST PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11640">
        <property type="entry name" value="NEPHRIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13895">
        <property type="entry name" value="Ig_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13927">
        <property type="entry name" value="Ig_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00408">
        <property type="entry name" value="IGc2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="Immunoglobulin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0393">Immunoglobulin domain</keyword>
    <keyword evidence="2 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="303"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="332"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="366"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="337"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3998445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="436" mass="47968" checksum="9B82A178B0ED9AC3" modified="2020-12-02" version="1">MIVVLPGSTARLKWSFVGNPARASLLWYFTRRGGSKAEELAVKFRTMDVLIANSSLPGVAIETPATLVLKNVDERYNGKYYFNVLVSGGGGEVAVEVFVLEKPTVTFNCSRPIIVNEGDDVKCQCRGEGGNPPADVTWYKGSNKIGGTGREEQSLTFSNVDKTASGTYKCVAKSHNVTDEKSIEVIVYYAVPPTVIRLTSTPENVVFGESVVITCEAIAVPLPSYTIIHNDTEVVSTHKTYIITVLEYSHAGSYKCIATSVLGNSSKEFSLSVGVTRTTNAPTTKDFGPGKAASEECNCSGTVWYMVVVILVSGIIIGILFSYIVSCSRRKFRSRKPNSNPEPKTTEVDTTYQELDLSKMNTEDNYQSLRNRGPQSNPEPKTTEVDTTYQELDLSKMNTKDNYQSLRVNAGNNEEESTYTELNQIRDVEDNYQSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7H9G9</accession>
    <name>A0A6S7H9G9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Proteasome subunit alpha type</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A069083</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="5">The 26S proteasome consists of a 20S proteasome core and two 19S regulatory subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 5">Belongs to the peptidase T1A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003647">
        <property type="protein sequence ID" value="CAB3999677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7H9G9"/>
    <dbReference type="OrthoDB" id="431557at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019773">
        <property type="term" value="C:proteasome core complex, alpha-subunit complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03749">
        <property type="entry name" value="proteasome_alpha_type_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.20.10:FF:000063">
        <property type="entry name" value="Proteasome subunit alpha type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050115">
        <property type="entry name" value="Proteasome_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023332">
        <property type="entry name" value="Proteasome_alpha-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035144">
        <property type="entry name" value="Proteasome_alpha1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000426">
        <property type="entry name" value="Proteasome_asu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11599">
        <property type="entry name" value="PROTEASOME SUBUNIT ALPHA/BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10584">
        <property type="entry name" value="Proteasome_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00948">
        <property type="entry name" value="Proteasome_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00388">
        <property type="entry name" value="PROTEASOME_ALPHA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51475">
        <property type="entry name" value="PROTEASOME_ALPHA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="2 4 5" id="KW-0647">Proteasome</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="243"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB3999677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="284" mass="30812" checksum="BE63931B2890AA1A" modified="2020-12-02" version="1">MFRNQYDNDVSIWSPQGRIHQIEYAMEAVKQGSATIGIKSSTHVVLVALKRAASELSAHQKKIIPIDDHIGVSIAGLTADARLLSKFMRSECLNSKYAYDTPLPVARLVGSISDKMQTQTQVYSRRPYGVGLLIAGYDDAGPHLYQTCPSANFFDCKCMAIGARSQSARTYLEKMLDEFPNCTPEELIKHGLTALRETLPNEQELTTKNSSVCLVGKDHTLQIFNDDAVAPYLALLDNLKGGRAGKAEAKTEGEGGEASMEDTAGETGETGEAGEGDDKTMDTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HCZ8</accession>
    <name>A0A6S7HCZ8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transient receptor potential cation channel subfamily M member 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">PACLA_8A059937</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004265">
        <property type="protein sequence ID" value="CAB4002129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HCZ8"/>
    <dbReference type="OrthoDB" id="301415at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.200.10">
        <property type="entry name" value="MHCK/EF2 kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004166">
        <property type="entry name" value="a-kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051852">
        <property type="entry name" value="Alpha-type_PK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45992">
        <property type="entry name" value="EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02816">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00811">
        <property type="entry name" value="Alpha_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51158">
        <property type="entry name" value="ALPHA_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CAB4002129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="350" mass="39365" checksum="EAB161DD45868313" modified="2020-12-02" version="1">MSGKRIRNDVSRKNKNGSTPHEIIVQRLVSEADNKQTYRPIQPRESVGFEFEDLSLVNIKKACAVHFNLPASTCDVLVSNKGPSCTHISQIPHRKDKVYLVRFVVLQEDQVEEEYEINTSKVNNLSTSTPGSLCQKKPEGTKICPSSISIASLLKAGKLVKPREKNKQWVEVAAEEFAIDTQKFSSGAFRDAFRASTIKPTKCEDCVVKTYNDDAVKTIQETANSSIEDHCRKQVQMHSVARHITQRFKAKTPPGFGECFDYNRCYYTMYNGKPVTVEDCVSTKEKLMILDIQGSDYALYDPEISTAELFDGDTAELYFCCGNYSSIGIQAFLKSHKCNKYCKLIGVCDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7HTW5</accession>
    <name>A0A6S7HTW5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A019955</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cornifelin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006208">
        <property type="protein sequence ID" value="CAB4008716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7HTW5"/>
    <dbReference type="OrthoDB" id="1045822at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006461">
        <property type="entry name" value="PLAC_motif_containing"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01571">
        <property type="entry name" value="A_thal_Cys_rich"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15907">
        <property type="entry name" value="DUF614 FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04749">
        <property type="entry name" value="PLAC8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4008716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="17813" checksum="9BE88E1195176528" modified="2020-12-02" version="1">MYNQGSDHEKIDMSSEIAPTTPPGYPALQRQPSEGAYPPPGAYPSFPVQQQPTNTVHNTNTTVVIQQQPAAVIVQGQRGWSTGMCACFDDCGVCLLGLCCPCILLCTVSSNAGECCCVAALCPIALRTKIRTRHNIAGSIVGDYYALQCCGICAMCQMARELNIHGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I235</accession>
    <name>A0A6S7I235_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transposable element P transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A013167</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020003480">
        <property type="protein sequence ID" value="CAB3998968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I235"/>
    <dbReference type="OrthoDB" id="8192384at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021896">
        <property type="entry name" value="THAP9-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048366">
        <property type="entry name" value="TNP-like_GBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048365">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21788">
        <property type="entry name" value="TNP-like_GBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21787">
        <property type="entry name" value="TNP-like_RNaseH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12017">
        <property type="entry name" value="Tnp_P_element"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THAP9-like helix-turn-helix" evidence="1">
        <location>
            <begin position="142"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like RNase H" evidence="2">
        <location>
            <begin position="212"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="Transposable element P transposase-like GTP-binding insertion" evidence="3">
        <location>
            <begin position="361"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3998968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="510" mass="57658" checksum="5985BFE3E5A38AD3" modified="2020-12-02" version="1">MLIQYTKEQVIKCINPIGHVIQYLYRIPGDIRDIFCKLTGFIILIASHVANGPPPVTQMSIAPSPRMASHITTINAEQTYDHIHCHARSQSSVNTPTKKKIRRIINKKDQQIYRLKQRINLKKPNDKSKREAIKILETMLPAKICNFVKSQIDLHANKSKKGNRYSSETKAFSLSLYHISGLAYRVISRFFSLPTKSTLLKWISRMPNCADFTGYAVETIAKKVNTMSAAGKQCIISFDEISLKTNLSYQSNTDELVGLEDYGDGSKSNFLATSAIVFMTRGIVDNWKQPLMNEACNSIIVKEKLVDIIEKVESIGLNVVAVISDIGSNFQKFVKEMGITPENPWFVHGEKKIIFPFDTPHIVKAIRKNLIKYNFYFDKKVASWQDIEALYQMDTKNPIRWCPKLTRQHISPHNFERMKVIFATQVLNHSVSAGLMMAVSGGLLPATAAGTAEFTSKVDEIFDCLNSSTFKNCKELNKPITADSNHCEFIKNTCLFIKQIRVKDPGTGKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I2K1</accession>
    <name>A0A6S7I2K1_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">long-chain-fatty-acid--CoA ligase</fullName>
            <ecNumber evidence="3">6.2.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">PACLA_8A033556</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="5">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.3" evidence="3"/>
    <dbReference type="EMBL" id="CACRXK020003983">
        <property type="protein sequence ID" value="CAB4001011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I2K1"/>
    <dbReference type="OrthoDB" id="5949690at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004467">
        <property type="term" value="F:long-chain fatty acid-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43272">
        <property type="entry name" value="LONG-CHAIN-FATTY-ACID--COA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43272:SF107">
        <property type="entry name" value="LONG-CHAIN-FATTY-ACID--COA LIGASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="4">
        <location>
            <begin position="95"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00026121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CAB4001011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="247" mass="26905" checksum="E297CBA8594973DF" modified="2020-12-02" version="1">MPQYKRPRAEQIAVGIGVCAAVCGTAYCLHKYIFTPPSLLMAEETAKMDIEHQAIDVPDIPGAKRSAFCEELLDSYDGITTAYEAYLRGAEISGDKQCLGTNLNGSYSWITYNEVLQKAADLGSGILELGYQPCPETFVGIYASNKAEWVLTDVACLTYSMVSVPLYDSLGADACTYIINHAEISVVVCDGNKLPVLLEKADQCPKLKHIIKIGDVSEEDEQNAGKFGITIKSFKDMEVKLSPPPAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I3F6</accession>
    <name>A0A6S7I3F6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Rho GTPase-activating 19</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A003571</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006759">
        <property type="protein sequence ID" value="CAB4010350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I3F6"/>
    <dbReference type="OrthoDB" id="10061772at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051056">
        <property type="term" value="P:regulation of small GTPase mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.555.10">
        <property type="entry name" value="Rho GTPase activation protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008936">
        <property type="entry name" value="Rho_GTPase_activation_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000198">
        <property type="entry name" value="RhoGAP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14963">
        <property type="entry name" value="RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14963:SF7">
        <property type="entry name" value="RHO GTPASE-ACTIVATING PROTEIN 19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00620">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00324">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48350">
        <property type="entry name" value="GTPase activation domain, GAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50238">
        <property type="entry name" value="RHOGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0343">GTPase activation</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="331"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="370"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="370"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4010350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="529" mass="59460" checksum="5A77342B07158F16" modified="2020-12-02" version="1">MPDHRDDTATVLFLDEHLTKAIYKYKKVWRKSQGKYSFVNAQGGVKNTLNLRGPTPIFNQPLSEANVHRISVLIDFLKKHVAAEGIFRISGSKKRQDELKHLLDKDIEINFNTFTEHDVASILKYFLAELPEPIITSAHIKVHMQIGDLGDEDKQIKALQLLFLLIPPANRHLLQQLLELLHEIANIKENKMSACSLALVFAPSVIQYKHKSSSCLSVVPEDITTFTAALAFMIEHVKEIFLIPDDLLQEIENQKSNNLAQVIRPATPTRKDEAVVSKPFCAQIDARLYSTTGNKHTADGLVDLYTQMAAMEDTPMKRQFLKRFAEFYPGTPPFKPKTKKPPEEEHKTTFNAPKIVSPRFRRLPLQAVNKSETESLCDSPTGNFRPFHTPGKECSSQAAKTGDLSRRNAAQTPATPSGYFHRRSPSMSSIRNPFKRKRRTKTIGSSSESSCDFPKPCTPKPRRTSSSSELEKPVSNPVRAATAKKPKKNKATVTPIIKKSLIGRDIRNLYSTPMNSSRRNKPFPASAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I4G0</accession>
    <name>A0A6S7I4G0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029933</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004134">
        <property type="protein sequence ID" value="CAB4001611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I4G0"/>
    <dbReference type="OrthoDB" id="5989194at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="631"/>
            <end position="650"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="16"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="152"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4001611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="680" mass="78890" checksum="160CA67F9C1BAE18" modified="2020-12-02" version="1">MAEFDKEITDETSDQAERLNMTLDQAVERSEQLRRNRSAAKGNITKKIKELSELKLTFLDVSEARNKRHEFNDVVNNFYVAHERYHDAIKDEYDLEDSHEYLQIEIRRIENFQRTLEEWITSLSTEHRTLEYDVKSGDSASNIAYKSRSKTRNSVVSSRKTEASTRSSMANATAKKAALKAEAAALNEHRALEEEELRLKHQELAQQQRQEEERLRLKQRKHQLQLQTQIAKAEAEERVYAMADLGENFHHPPSRPLQLPLLPTDEYPQPSRVSNNTPQYLQQQMKSTGQKSIQNYDSELAENFLHDMLDMQRQQHHQNQEMFQMQQSRDFHLQHLLNQHQQSALSMTLPNAQVPMFGGDPVDYCHFIRSFETLIVAKTPSSGSRLYYLVQYTSGDVQKFMRSCLSMNPDEGYQVARKLLKQRYGQQPVWIESQMYRKSSLKMARRFKGCLLQSVISRLPYLLRQRWRDVADDITSNKMREITFEDIEKFVKVKAKAFTHPIFGKINSDSKNKLIQDPKGPRSRYAFGVNGNEKNVHRNFVNTEATAGRLEMRAYYKNCPKCNGAHLLSRCDVFKREIIENRLKLVRKKDLCKNCLFHGYIARSCPKESFCKVAGCQAKHSTFLHPRNVDRREEKPFDEQSTEANGKEANETEITVAQNGYVNTNVSRCDVIGAGVTSTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I6L5</accession>
    <name>A0A6S7I6L5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062401</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007851">
        <property type="protein sequence ID" value="CAB4013346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I6L5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4013346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="15667" checksum="37DE2EF43C503B45" modified="2020-12-02" version="1">MDVQLVQENGDHTRKPLAILLHVQEETYLANVRNIIAEEVSDIMPPGKEDLVKDLVTPKNMQKTEDGPKAKKMKAATVPSNISCVKIASAKIENLQAEVNLKTEVLKKTVDSAARKDILTALSVADMFRHIMCRIVKSTGCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I794</accession>
    <name>A0A6S7I794_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A067540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007259">
        <property type="protein sequence ID" value="CAB4011760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I794"/>
    <dbReference type="OrthoDB" id="10068764at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4011760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11600" checksum="A543BB72D19AFF4D" modified="2020-12-02" version="1">MASKFTPPPVFDEKKSWIDYKKEIKIWQALTDLPAKKQGPSLYLSLSGKAREAALEIDIEELKKDTGVQTILERLDKLYLQDTNQSAYIAYQNFESFKRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7I7D0</accession>
    <name>A0A6S7I7D0_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATPase family AAA domain-containing 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A033143</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion outer membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020007601">
        <property type="protein sequence ID" value="CAB4012693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7I7D0"/>
    <dbReference type="OrthoDB" id="10254455at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005741">
        <property type="term" value="C:mitochondrial outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140570">
        <property type="term" value="P:extraction of mislocalized protein from mitochondrial outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000538">
        <property type="entry name" value="ATPase family AAA domain-containing protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051701">
        <property type="entry name" value="Mito_OM_Translocase_MSP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45644">
        <property type="entry name" value="AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45644:SF3">
        <property type="entry name" value="FI08533P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="3" id="KW-1000">Mitochondrion outer membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4012693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="249" mass="28069" checksum="BFE898FDCE44A0DB" modified="2020-12-02" version="1">MRQKSLFRKSHLLSAPKGVLLYGPPGCGKTMIAKATAKTAGCRFINVQVSSLTDKWYGESQKLAAALFTLARKLAPCIVFIDEIDSFLRNRSLHDHEVTAMVKAQFMNLWDGLETDDNSQVMIMGATNRPEDVDKAILRRMVATFHIGLPNASQREAILRLILEKEKIEDDLDYSHIATLTESCSGSDLKEICRHAAMTCVREYLATIECDDDYGDLSKVTEDNIRRISTKDVENSVQKCRLQFMHHKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IF45</accession>
    <name>A0A6S7IF45_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TALPID3 -like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A029820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009063">
        <property type="protein sequence ID" value="CAB4016296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IF45"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005814">
        <property type="term" value="C:centriole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036064">
        <property type="term" value="C:ciliary basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007224">
        <property type="term" value="P:smoothened signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029246">
        <property type="entry name" value="TALPID3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15721">
        <property type="entry name" value="KIAA0586 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15721:SF2">
        <property type="entry name" value="PROTEIN TALPID3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15324">
        <property type="entry name" value="TALPID3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="293"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="375"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="447"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="534"/>
            <end position="666"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="738"/>
            <end position="768"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="799"/>
            <end position="893"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="906"/>
            <end position="929"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="945"/>
            <end position="1000"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1020"/>
            <end position="1041"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="460"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="478"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="579"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="599"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="611"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="647"/>
            <end position="666"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="738"/>
            <end position="752"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="875"/>
            <end position="893"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="912"/>
            <end position="929"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="946"/>
            <end position="969"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="975"/>
            <end position="1000"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1025"/>
            <end position="1041"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4016296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1041" mass="114195" checksum="0F0033C7408996F4" modified="2020-12-02" version="1">MSTEKRAKLRNAGKENTQSRIKTTAKPKITKPPTKPPLKHPAVKRPLEDVTYVSRVYGRPDHVTGRTTTKPDQARYQSPGVLKPNSKSTAAKRKSTSPPRFDESSSTLSEDYHPSTRRATKPRYYFQPDAGADQSVIEAHFKENQGPLPGQLLPMAIPLGKPRMDPALRLPLLIGEEGSRLPQTVIVRSEVKQPNVAVITLKDEECLQNSDSGIKKQKKTVPKKKERVNLEKQILPNVDIDTSAVSEISSDISAMERRMDTRMILPIPDPLPRPDASEYDEFKDYEHVGIVGDDQDSEKSSVHGGESVISLHGESRTGKPSYQGPAFPPRNIPIDIQEPGGFQGVLDDMRTPSETVEHKARELIEQELLARVVSEMSPSPPDPTSRMHRRPSSQSLTESSDTEPDLAAAIGLRGIQLFVDAGIPVDTELVRNLIMDVLQEKVTTMLGYPKPQKHTPPETQEPEDDYTEPESGSEDYSRVQTPVRTPSAASQPESRALSHVSTPDRTQSPLSISSTLDGAIDKNVTDATSGHVVIDKHSDEIEEGPLDDSVDKSPIVTPVATPSPPESVMSLPTPDESEQEKVESEEKSPVETPEITVSIRDKTPEENPKDLDEDDLKEQTLVEDEDQETGTDIPVIKFELEPEPSETKITNSPSSITTTTYSTHSTMGTVATDDEISEGEQLQPYVHVGQYSEGEFVAPSGIMGNMTTLHEIPDDIFDSFNTSNKKVDPVKQAVHGLLKLDDASDESTRASEENTSSEGQRRLPPGGSLAQSVLQEDRSEGEVGGDVVSTLLTRIRQSVWRGRPSGDGDRQDTASVGEIEERSQQPFFQRLRRPIRDEDDLSVGEFTTHDHNTVNMEPLPMQTLDRPSDSDENNNDSQRSSSISEVPNQTWDTNIIMVTPKKAAVPFDQQKPHPNTSNSEESPQANPELNTTFPRVVHVAEARHVSTPTGFSSSPERGSGSKDNVTMETLSEIDIASHDSHVSDHVTDVSDHLTPKHVPPDRARIQLTLPSAEPSVSLISEGVLGSDDSAGEISSISSGEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJL4</accession>
    <name>A0A6S7IJL4_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A001146</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005378">
        <property type="protein sequence ID" value="CAB4005982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJL4"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4005982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="276" mass="30905" checksum="C0C0140181DC6D5B" modified="2020-12-02" version="1">MSRLRHAVYRCVSSRSLSLMSRSILWPEYRSCHAMIFGTGCTDQCNDRVAAAIGIGGVESLEIGEDCMSESSVNVGVVAEGSVDGCDGVAGMDDVVGLMGEKDVVECNVRLVEVTNDTCLGNDFQEEANQDENVEDINNSEANNQQTEKESEGQQQTQTKQRRALGFVLGITEEVLQFDKARKRLKDSPNNNDLIKAYLHVFKVMETSVSRAQANSKRQLKEIEQQYFRSRGKLPTSKDMLKDPTSKLLIDKLKYCKALVDQWKEEKKIILHESNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IJS2</accession>
    <name>A0A6S7IJS2_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A003958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020009453">
        <property type="protein sequence ID" value="CAB4017229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IJS2"/>
    <dbReference type="OrthoDB" id="5987425at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4017229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="110" mass="12424" checksum="755DB3D264F6F406" modified="2020-12-02" version="1" fragment="single">RIGEEQDCWDNSDYPKDSPYYSTHNKKVIGKFKDEAEGVPIIEFVGLRSKMYSYVKENGGGGMTAKGVKKMPPKKSQARKRALQTAGEGHQRNAAVVNQLGTRRWRPVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7INE5</accession>
    <name>A0A6S7INE5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Stabilin-2 isoform X2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A015199</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010361">
        <property type="protein sequence ID" value="CAB4019226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7INE5"/>
    <dbReference type="OrthoDB" id="8955208at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.300.10">
        <property type="entry name" value="Tie2 ligand-binding domain superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002049">
        <property type="entry name" value="LE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024731">
        <property type="entry name" value="NELL2-like_EGF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24038:SF11">
        <property type="entry name" value="INTEGRIN BETA-LIKE PROTEIN E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24038">
        <property type="entry name" value="STABILIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12947">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00181">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00180">
        <property type="entry name" value="EGF_Lam"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00022">
        <property type="entry name" value="EGF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01186">
        <property type="entry name" value="EGF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01248">
        <property type="entry name" value="EGF_LAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 6" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="6">
        <location>
            <begin position="88"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4019226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="24833" checksum="08D100D98E2155D5" modified="2020-12-02" version="1" fragment="single">SSCRPCRATTLRCRFGYRYAGKEDCFYTAFGSRFIGCKAVCVRPIKIRQCCPGFYGTFCTACPGENGKACFANGKCHDSRSGSGSCHCNGSFYGTACERCKPGHYGPTCKKCSCYGNTTCDQKNGFCRCPPDRKGLTCNKTATYDKCSHGNVTFQCHQHASCFQNGTINATCKCDYGFEGNGTNCERTNMCKGNGGCSPHADCKYDGILNRTCTCKINYEGDGFWCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IPA6</accession>
    <name>A0A6S7IPA6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A062467</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010531">
        <property type="protein sequence ID" value="CAB4019577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IPA6"/>
    <dbReference type="OrthoDB" id="6781885at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="504" mass="57015" checksum="CBD20481AF01B37D" modified="2020-12-02" version="1">MAMPSNKSLGPDKIGMRVIKDCLPIILGPLTHMINCSLMTSTFHDLWKISEVIPLLKEGDHEIASNNRPLSLLEVVSEVCEKVVLNQFSSYLKEFNRISSHQSGNRSLHSTETSNIFVTDTMLEAIDNKNLTALILLDLSKTFDSVSHSILSHKLSCIGASPEAVKCFQDYLTGRSQYVRIGSTKSSTRPITHGVPQGAILLPLLFCIYINDLPGSIQSCNLDSYVDDSKLYKSFCIYDLEQTTINLEADLQIAAKWCLEHQLLINPEKTKFLLVGSRPMLQNVPTEISLTFLGKTIRPVLLAKDLGINLDSYLSYDVHISKLVSSCMRKLCQINRVKDSFDNETLKLVIETLVINKLLYCSTVWSNTSSNNINKLQSVQNFACRVISGVGKFDHITPALRELNWLPVEKLLLERDTVMAYKCFNGLAPDYLVDKFIKRSDIHDRSTRNHDLLDIPLYKSATGQRTFNYRGVKIWNDLDDKLKNITSITIFKKKLREILLKESY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IR76</accession>
    <name>A0A6S7IR76_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A077061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010431">
        <property type="protein sequence ID" value="CAB4019380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IR76"/>
    <dbReference type="OrthoDB" id="3169036at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002893">
        <property type="entry name" value="Znf_MYND"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01753">
        <property type="entry name" value="zf-MYND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144232">
        <property type="entry name" value="HIT/MYND zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01360">
        <property type="entry name" value="ZF_MYND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50865">
        <property type="entry name" value="ZF_MYND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4019380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="202" mass="23605" checksum="982AA4D4D08BA940" modified="2020-12-02" version="1">MSCFRCTKEDESMKRCSRCKINTYCSVGCQTAHWRRHKPNCLPADSEVHQLFHICYEDLFPASTNPIWWQFGFANISEYHGNVISREGYTALQILLGLYQAIRTDVSLAEDPSLLQSPGNTMGMSKKMLQKAYKANRLDDLLQRFISNSISSYGDRVAKYLFMWRQNKLIIGPTRPTSSNMVEWHKIKEESRRNIFVKYYEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7ISG3</accession>
    <name>A0A6S7ISG3_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Catalase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">PACLA_8A007818</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="7">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the catalase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020010669">
        <property type="protein sequence ID" value="CAB4019880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7ISG3"/>
    <dbReference type="OrthoDB" id="413122at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004096">
        <property type="term" value="F:catalase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042542">
        <property type="term" value="P:response to hydrogen peroxide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.180.10">
        <property type="entry name" value="Catalase core domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018028">
        <property type="entry name" value="Catalase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011614">
        <property type="entry name" value="Catalase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020835">
        <property type="entry name" value="Catalase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11465">
        <property type="entry name" value="CATALASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11465:SF9">
        <property type="entry name" value="CATALASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00199">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00067">
        <property type="entry name" value="CATALASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01060">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56634">
        <property type="entry name" value="Heme-dependent catalase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51402">
        <property type="entry name" value="CATALASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CAB4019880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="618" mass="70538" checksum="28FA87800E62EBEC" modified="2020-12-02" version="1" fragment="single">SHCFETYSVKFYGPACASHFDNINTIIGDEVNSLAQRWDKWTNSLDYYIRASGISDQKQKRAILLHLADAEVQEIFETLPDTGEHYKTALEKLNAHFNPCKNIAFERHVFRQATQRADESMDAFVTRLRTLAKTNRGQYLPIPFANDMRQLPPSYGASRVHQSIVSVSTTAAVIINRMKSCFAVHGLSEAIVTDNGPQFVAEEFDLYLREHGITHRRVTPYWPQANSEVERFNRTLEKAIRAANTEGKDWKSELNTFLLNYRATAHCTTGKSPAVLLFGREIRTKLPSLNTSQRDRCQKAKMKKYADEKRHAAPSNIKRGDKVILKQERKNKLSTKYDPDPYTVSLKYQYRLLLCYRKNLQFTRDRSSEKSGYMKTLYGLSRHESKLQKKKTPPTATPSTLTPATVQASTQAGAPIRNFTGSLTVGEGGPIVLQDIYFLERMQHALRERIPERFVHAKGAGAHGYFEVTNDITNHCKASLFSEVGKKTKCMVRLSTVGGERGSSDNERDARGFAVKFYTDEGIWDLLSLSTAVFFIRDPILFPHLIHCQKKNPSSNLKDPNAFWDFMTIREESVHMLMMIFADRGIPDGYQHMNGYSGNTFTMVNTKQEAVYVRFKWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IW03</accession>
    <name>A0A6S7IW03_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A087211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020006555">
        <property type="protein sequence ID" value="CAB4009732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IW03"/>
    <dbReference type="OrthoDB" id="5984798at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF1">
        <property type="entry name" value="GAG-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="231"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4009732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="421" mass="48089" checksum="77860C2CBB1D29EC" modified="2020-12-02" version="1">MDADIDYLTAKKLLDDKYGEPYVVSNAYLKKVLECPSIKTGDDAVVDRLAMFLEQCLSAMTSLSYLNILDHPHILQRLIVKLPFYLQDRWRREAIRIRGNGARIPSLKDFTKFVQMEAKIANDPVFSRSVLGRIQVPEKNPRKSGYGRDDPLYKQNNRTTKVDEYQDLHLPPDQCPYCKETHDLDDCQSFVKRTLENRKAWLKEKNMCFACFNAGHRANGCLQRRRCRTCPGKHPTSLHDPDFASKTKKKRSEDDRNQNSSDGKFNSARTTYKESSSAQDINCTVTAMPFVPVKLIANEREVTTYAMLDSCSTGTFILEDVRRELQIEGTDTNVLVNTMYGSQVHQTKVVTGLTVTHIDGNNRVNLPRTFSRDTIPASKDEIPTEELVAKWKHFSKIELPSYLPDVRIGILIGSNRPWAKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7IZI6</accession>
    <name>A0A6S7IZI6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A058956</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020012431">
        <property type="protein sequence ID" value="CAB4023306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7IZI6"/>
    <dbReference type="OrthoDB" id="8039770at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198">
        <property type="entry name" value="ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33198:SF20">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="149"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="151"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4023306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="291" mass="33086" checksum="8B7FCBFD9C10806C" modified="2020-12-02" version="1">MATSNLSLPNFPHFDVHVDGNVGPRWKKWLTRFERLLIATNITEAKQKRALLLHYAGPAVDEIFDTLSDTGEDKDYKKAVDALNAYFLPQVNSDIDAYNTRLRQLAQTCDFTDVEKEVKSQIIIGCLSQRLRRQALRDNPTLKDLLAAGRAQERSETQAEAVEKGMSPVNSIKHEQSQRDTRNRKNHGKYQQSKSRYFGNAGNQQTPPGNRQFPTRNRQIPPGNQQIPTQKCRNCGGIFLHNGDCPAKGKDLNPNDAKSTKYRKPHQRNPNIYSPCRITISTIHHHSVKFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7J9E7</accession>
    <name>A0A6S7J9E7_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A071579</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020014368">
        <property type="protein sequence ID" value="CAB4026721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7J9E7"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4026721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="60" mass="6385" checksum="7E00BD6F49F745B5" modified="2020-12-02" version="1" fragment="single">ISRKTSHVVLLILLAGDVATNPGPSSFHPPTKNLGQGLNALYLNSRSLKAFVPSDQDLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JJ40</accession>
    <name>A0A6S7JJ40_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cyclin-Y</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A057396</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cyclin family. Cyclin Y subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017419">
        <property type="protein sequence ID" value="CAB4031187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JJ40"/>
    <dbReference type="OrthoDB" id="10250320at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd20540">
        <property type="entry name" value="CYCLIN_CCNY_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.472.10:FF:000011">
        <property type="entry name" value="Cyclin-Y isoform 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013763">
        <property type="entry name" value="Cyclin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006671">
        <property type="entry name" value="Cyclin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14248">
        <property type="entry name" value="CYCLIN Y, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00134">
        <property type="entry name" value="Cyclin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00385">
        <property type="entry name" value="CYCLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0195">Cyclin</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB4031187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="337" mass="38745" checksum="F0F21E9FB70A71F9" modified="2020-12-02" version="1">MGNMTCCMPHSASDHNFDRNAIFSPKRGDGSSLDLPHISEREDLSNHQGTLFMQKSMKFSGRGKLRGKRAISLNVDLRRKQNGEVYYNPRLSKKCSSCSTIFLDDSTVSQPNLKSMVKCVSVAVYFLIKYRDAETRTLDIFDERRHPLTREYVTDDYDMVDPTQRQIYKFIKTLFHAAQLTAECAIITLIYLERLLTYAEIDIYPGNWKRIVLGAILLSSKVWDDQAVWNVDYCQILKDITVEDMNELERSFLEFLQFNINVPSSVYAKYYFDLRSLAEENELAFPLEPLSRERAKKLEAISSICDNNMTDLSLPNLKRTSSLDALTSKRSSMAILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JLV9</accession>
    <name>A0A6S7JLV9_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PREDICTED: uncharacterized protein LOC107346460</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A044507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020017385">
        <property type="protein sequence ID" value="CAB4031144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JLV9"/>
    <dbReference type="OrthoDB" id="5990159at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005312">
        <property type="entry name" value="DUF1759"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331">
        <property type="entry name" value="PHD-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47331:SF5">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03564">
        <property type="entry name" value="DUF1759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="197"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="209"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="233"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4031144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="333" mass="37148" checksum="E455914BBA4C070A" modified="2020-12-02" version="1" fragment="single">LAINKHMDILLNLEPVTSPHNLKGLRTLYDTVESHIRALKSLGVQAETYGNLLCSMLLNKLPQELCIIVSREVQGDVWELGHLLELIEKELEARERATANTNRETWPHYQTKKFSKPQPSISTLQTGGTSPTCTYCQQSHTSNSCTNVFNITARIDIIKRSGRCFLCLRKNHLSRDCNSKSRCHKCNGKHHISICTKNSSHNHAQKTPSDTELKQEQHEQTSESKISSDKPSRSNQSGNSGTKSLFTSTKTPILLQTAKATILPVSRNGKSGNVRIILDGGSQRSYITSRTQDLLSLPTERTETMSIKTFGSGEENLTTCDSVNFILESHTDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JPH8</accession>
    <name>A0A6S7JPH8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A086557</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020019192">
        <property type="protein sequence ID" value="CAB4033367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JPH8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="188"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="222"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4033367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="287" mass="31735" checksum="76C721DCB02F2064" modified="2020-12-02" version="1">MPINYYYYALAEKQGAFLLTARPIIAALTVLDHPSEEEEGPDPDLVKGILEDALVLLGNANVRLNTWRQRRFSEYLTEVGKRTLKEEIPSDQHLFPDRFHDRIKDEHNYTATNKNLISKPHDKDLSSPRFIPSRQPFNFVVAQEPLAGVMAVENEGGTIPPEITIREPHKDSNPELGQQQAKADYPKLEDNLSGSLDPTNGTGLQNTSDRFSTPMEIERDQSSITTAVPHGQCSSGVAQQSSNQAGPTSSGSVCVNFISSGEREQFWPVSSRHKPSCPEPICGTPAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JRX1</accession>
    <name>A0A6S7JRX1_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Tachykinin-like peptides receptor 99D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A072233</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the G-protein coupled receptor 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020024">
        <property type="protein sequence ID" value="CAB4034327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JRX1"/>
    <dbReference type="OrthoDB" id="5964776at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004930">
        <property type="term" value="F:G protein-coupled receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00637">
        <property type="entry name" value="7tm_classA_rhodopsin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1070.10">
        <property type="entry name" value="Rhodopsin 7-helix transmembrane proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000276">
        <property type="entry name" value="GPCR_Rhodpsn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017452">
        <property type="entry name" value="GPCR_Rhodpsn_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695:SF37">
        <property type="entry name" value="FREE FATTY ACID RECEPTOR 4-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45695">
        <property type="entry name" value="LEUCOKININ RECEPTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00001">
        <property type="entry name" value="7tm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00237">
        <property type="entry name" value="GPCRRHODOPSN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01381">
        <property type="entry name" value="7TM_GPCR_Srsx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81321">
        <property type="entry name" value="Family A G protein-coupled receptor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00237">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50262">
        <property type="entry name" value="G_PROTEIN_RECEP_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0297">G-protein coupled receptor</keyword>
    <keyword evidence="5 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 8 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0807">Transducer</keyword>
    <keyword evidence="2 8 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="20"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="59"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="102"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="139"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="183"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="238"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="385"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="390"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB4034327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="409" mass="46754" checksum="C610C5AC7079C3E5" modified="2020-12-02" version="1">MMVNATTTSKPEEAERLPYWSHVLALLLYIFLFLLAVFGNALALWILRTKPELRTLTHAFFTNLVIADLLLALLTPFEAVATFSAVYVFGDYGCKIQRTSLYFFYAASILTLSAISLERYVAICYPMKYDDFKKRKTRIIVFIWLASAFIVIPHIYLSEERPLNGDTVCFQFHTTHQTRVPFFWGYSVPCFVLLYLLPLILVSFTYWKAARKLMELENRLEVTSTVDISMTVRMRHEVLRMLFVVIVFFVLQWTPFEIVEILDSAPGVIDDVNPISSHRVAVNMLAFSNAVCNPILFGFMSKPFREGFKEAGLKIMKFICCATTPLCSCWDNVPFERCCSFGFQDRKESTADLSLAAPNTSTVEIDWESSFGRLSNPVSIVESELADSELTERSESDMPDSVEPRDHTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7JS89</accession>
    <name>A0A6S7JS89_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A009585</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020020125">
        <property type="protein sequence ID" value="CAB4034447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7JS89"/>
    <dbReference type="OrthoDB" id="286301at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.180.10">
        <property type="entry name" value="FAS1 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036378">
        <property type="entry name" value="FAS1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000782">
        <property type="entry name" value="FAS1_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02469">
        <property type="entry name" value="Fasciclin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82153">
        <property type="entry name" value="FAS1 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50213">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4034447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="142" mass="16159" checksum="AFB33DE14BA6D389" modified="2020-12-02" version="1" fragment="single">MNGKICIVILFTLSVVSLCHSLLLQVGDDELIAEVNKRVNNPEIDFDLVLQKYNLTSFRTLLMNAKLFDRLNVTNTSYTVFAPTNKAIMNAKSLLLNTTRLPEILMYHVHLGAFPTSNIEQNMKLKTLLGGQKKIRFERYKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7K480</accession>
    <name>A0A6S7K480_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A066376</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020023955">
        <property type="protein sequence ID" value="CAB4038221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7K480"/>
    <dbReference type="OrthoDB" id="5982038at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4038221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="271" mass="30867" checksum="C2CAEDAF55AAE2D0" modified="2020-12-02" version="1" fragment="single">MPQSTPDSASQPFQIILPVQPTRTDESFFKGILEKINVELRGVARGDTNSMLRSRSFDRLSNFSDEQLVEELKTMCPITYKLLACMLELENCSEKKIAALSLIYGVIMFKRCKELGFIQSINTIILSDSGANTEVYERFNKLGICFEKTMKYKIQDEIGTHFLDKVVEQVKAGNTFSFVLDNIDWEVKVHEMRSDNQNQSVHAVATSLVFDRVSCSHLDDTEPQRSLAETDIKQLVELNVNDAEQQRQSYKMIAAKILCEQIPAFSFLKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KEY8</accession>
    <name>A0A6S7KEY8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A072037</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020032268">
        <property type="protein sequence ID" value="CAB4043397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KEY8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4043397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="83" mass="9660" checksum="CCF850C56759AB6C" modified="2020-12-02" version="1">MISLLCLRFMNGILDWRDKQADYATHILNGNYQRVDTETVKNEKLKQPEAAITIHTIQPYGKTMREEESDVPYTEDSDVEVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7KJQ3</accession>
    <name>A0A6S7KJQ3_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A085791</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020034610">
        <property type="protein sequence ID" value="CAB4044338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7KJQ3"/>
    <dbReference type="OrthoDB" id="414730at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33332">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="165"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4044338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="296" mass="32927" checksum="5BB3E49BA80C24DA" modified="2020-12-02" version="1">MIHEMYCISKLNQTDSTKLWKHINELVPNNSKSAPTAIKDGETTLTDAKDLCESFNNYFSTVVYKYLPTSNLDPDLEQLNDFVSSKITDDILLTIPPLTCDEVFQLLNQLDPHKATGLDGLSSKILKMSASVIAEPLTLILNQSITYGYFPMRWKTARVAPVHKSGSRTEKTPVSFGVPQGSILGPLLFILFVNDLPLHSNQSVDLYADDSTLHSSGNSMNQLNCTLSSAMEDIEQWSTFNGMVINGEKSKSMVICTYQKSTKIVSSELHINYNNTVLENVKSKRLLGVIVDNHLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7L9K6</accession>
    <name>A0A6S7L9K6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A028567</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020016025">
        <property type="protein sequence ID" value="CAB4029229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7L9K6"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4029229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="50" mass="5521" checksum="AFEECE0745930EC2" modified="2020-12-02" version="1" fragment="single">DHESPNSFCQKQIGNLPVILIDQESIYLTVGKHILLRTDVGQIAEAVVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LSR2</accession>
    <name>A0A6S7LSR2_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">COR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">PACLA_8A029376</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020028405">
        <property type="protein sequence ID" value="CAB4041489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LSR2"/>
    <dbReference type="OrthoDB" id="120976at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032171">
        <property type="entry name" value="COR-A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47679">
        <property type="entry name" value="PROTEIN TORNADO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47679:SF1">
        <property type="entry name" value="PROTEIN TORNADO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16095">
        <property type="entry name" value="COR-A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="COR" evidence="2">
        <location>
            <begin position="270"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CAB4041489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="645" mass="73529" checksum="A74B78814C882AEF" modified="2020-12-02" version="1" fragment="single">MTSESEAETVLYKKTAEYLDGGVQRNLEGDAPEPLKPVMQVKPVMPVMQVKPEMPVKPVMPVKPLLRKEISKIKLQRSTEHDQNEVLRVFVSDFAGQSIYYDTHGCFVKPHCPYVLVYDLSLEFDKPAVPKFKTSNEEEEIEMNNPHLNTNLDNFTSWLKFLQGLGECQDQQFPDKSGHFTTAKGENFKLPPVLIALTHSDQVKDNDSKIDCVQKKIKKVLSGGKYENVVPEFLLIDNTLEGDDGDDVRKLRRKLFDLSNGVLNQEILMPVKWLDFEAALSQKLSPDSKYIPVDEAKQEAEACGVGEFDHAIKFLHRQGVVVHHSGSSKVVLDPPWLMNRFTKVISMPGKLDALSRHALDVFKQKGIMFQEYLETLEDAELLKELMQKFNLICPCQHDGKAAFCVPSVAPAMKPGMELEASKMELNVPSLFVTFPRQLVPMSLFTKLQVKLISEWEKRFPNQQATPSFCCNYSLLPLIIDGDDVYDVCLIDLHEFIKVAVFPKHGGNHFKFASNLKATLKKCLDDLKSPDQLLFSMTSYDLEVECTCCFGKEERRCSRHHKIQCHLDRCGHRHFWKLSDLQRFYNDESPAICRSDKRSSKVFDIKSVKMWLNTESNQDLNVSQYDAEDDLNAYGSPTYTAQEAQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LUS8</accession>
    <name>A0A6S7LUS8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A039781</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020039549">
        <property type="protein sequence ID" value="CAB4045452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LUS8"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="121"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="220" mass="24332" checksum="0713107DC4C680FD" modified="2020-12-02" version="1" fragment="single">KAYQRYLVDGKAKFHVRASLSGLPFAVEIDSVYICKSCLDKLKQLDNLKRQDRELLAILKGLVTSSKRVLETRESSLASSPPESLERVNIAKRPCIESTFRPFVAPLSPVSVQTGCWSSIPSVESPSSPRDSSVVHHSTPSKQPDTFPTSSRQSGVVTVKLQWSNDKNERDLPDDLQSLGKMLVHGTYKQIANAAWKSAALRKQLQIVALIKQIDSECNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A6S7LV78</accession>
    <name>A0A6S7LV78_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF7041 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A080279</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020043442">
        <property type="protein sequence ID" value="CAB4045932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A6S7LV78"/>
    <dbReference type="OrthoDB" id="6260718at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055469">
        <property type="entry name" value="DUF7041"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33327">
        <property type="entry name" value="ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33327:SF3">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23055">
        <property type="entry name" value="DUF7041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7041" evidence="1">
        <location>
            <begin position="17"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4045932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="227" mass="25513" checksum="DB4002DE0FC1195C" modified="2020-12-02" version="1">MSDDEIDEMVCGIGLKLPTFSTKSTERWFQCCEAAFRLKKITSSNTKYDHCLSKIDPETFDDVCLTDLENSEDPYGDFKEAVLSRYSLSPEDRVEAALAYEVDDIRSGYQRIKSLLDKSRVPDLHVALTKELLLRSLTDTQRATARAFNSLKIEDFVKAIDDIRRRSTGQKPAGAEITAIGSEKGKKNRICRLHFKFGVKATRCEQPKTCPFGNKNTTPANSNPSSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DA63</accession>
    <name>A0A7D9DA63_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="4">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">PACLA_8A039796</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="11">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="4"/>
    <dbReference type="EMBL" id="CACRXK020000238">
        <property type="protein sequence ID" value="CAB3979879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="OrthoDB" id="8062037at2759"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16481">
        <property type="entry name" value="RING-H2_TTC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056872">
        <property type="entry name" value="TTC3/DZIP3-like_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056870">
        <property type="entry name" value="TTC3/DZIP3/RBM44-like_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043866">
        <property type="entry name" value="TTC3/DZIP3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056871">
        <property type="entry name" value="WH_TTC3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17550">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE TTC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17550:SF4">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE TTC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13432">
        <property type="entry name" value="TPR_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24525">
        <property type="entry name" value="TTC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24905">
        <property type="entry name" value="TTC3_9th"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19179">
        <property type="entry name" value="TTC3_DZIP3_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24812">
        <property type="entry name" value="WHD_TTC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="344"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="454"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="758"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1244"/>
            <end position="1263"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1635"/>
            <end position="1713"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1792"/>
            <end position="1841"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="1405"/>
            <end position="1549"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="10">
        <location>
            <begin position="44"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="10">
        <location>
            <begin position="401"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="758"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="10">
        <location>
            <begin position="1244"/>
            <end position="1253"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="1254"/>
            <end position="1263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="10">
        <location>
            <begin position="1635"/>
            <end position="1656"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="1677"/>
            <end position="1689"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CAB3979879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1940" mass="216106" checksum="518A83A1AF2B00DB" modified="2020-12-02" version="1">MAMSPRREEKSAQRNRKGPSSESSEDSDDTCSSSGSPPPLTSESENESEDECVDNEKARSWWQGLDVEDKDKRKACIQIHVLSPFLFGIVPPGHEDKLIDWSYECGLLPTKDVQQVVNATNATFEAIQIVENGFEVLTPFMTQRMGVSRILSLKSDIDKCTSYKSALECAEDQDWFLARRNIVKLPDGAKKEMATMALILTVYHFAGHLQLSYKRKTDVLKRYYKDCKHAEEKALELKEQGNTEFASENYRAAISRYTRAVGLSPFNYIMYGNRAQSYQNLGNYRQALIDAKRAVILKPDWDKGQYRFKQAANALHSSEGDNASFLTFCVDKDVLNAKYAPKQNGAQAVKKDNPETTKGTTQKTEDDSGEGSVPELVSADESDTSSGESDSEPQTKPDMPDLVDEDASDSNESGIDEDDYHKIATATKKVLMDGWESRRPKKMSKSTLEFLRKNKEELGKKETEKEPEQKRVPEKKPEKAEKPKKNKEVNHVEKPIAKPVSVPERKTQIEGILREGSKALLDNCFQDAFESYGKALGFIDTGPRKSLGYGDKKYVIVLYAYGTALIGLDVHKKLEAAKNTFQNIITSFETLNFPLAFYGLGRIHHRQNRFSEAIKTLEKGLSIISKSNSEIYWPGTDIVIEETKGGNLKVSFEKILTICKYHPKPDAICRFDNCAGVKTSIYGNDTDYKGYVRIICTDACLVEYHSQCWKKLKSQNKYTDKLTDKDFLDSSCFTSSCFGHISAIQVYDTDGLKTELHSEKPKLKKEKHEKLATTEPTAGSKKKKRSKKKEKEVPNEVEVKHNDVEVHEEEKCDIPDEKPPAAVLEQEEKEPTDGCIETQSSVEDLSKIPESGMFVLKKDDDQQVALPTKQAKGKNKKKKTKNVQSLDEFLGRDNEHLRLRPFQHDDENYDEIPSQPFTRQPPEGWMSDPFSIPVHLQNEAREIESSLATFSHNNMYPSNDPWKKDSIREYVYSAFINLLKAEGSLHVMSEPMRKLLNIMPEEARILVQKEGGLRDFLAISSLFTIEEDIVTNFEDKLITDLSKPYKKPQDPPVITPKENGAIEKNGTLEKIPDSFSSNTATVQFGPVGSLLANVGDTLPQNKSLANVGDTLQLNNNSKIHFPLPNFTGAPNLENLGNYGSTHKENVNSSAMTDTWSAQGSSLNKWTCNVKEFVPLQKYVNIVNTAEISNKNTVSVATGGNELGEIEVKSTKDMNTKTAREIADSSTNDLDKEIHENINKILSDDSPDDVEDLVNESTDNGTKTIENTSGVMEVKEDDSDVKSSVEKIFSQPSNNLALIDESVLKKESEEPVNIKITNSEPAASALSDQDVTISQNKNDKKTNEQNEPILNTVPNSATKDTAVFVEPKLTKEKGVQSKPSTKTKIIMTEAMNEPYKAEYEKLLRSCQGWQSKYQELLDKNIQMERKYGLDVVNLEKKLKDCGNKMEELSKQCQQIQKHRDHDLQAIHQEKREKNEQIKKLQEQLSAMSKSEEKQIQALKAEISALECQHQKEKQQSISEKESAEKLRLYSQQQAKRASNAEVQLMELQRDVNFTFFTRALQEADLTLHNINQILTVNSTPQLQELGQNWRRYIAECKLQFGRNKAMFDTSIPQLKEGKPLSSLTSIRIARPATYPGPPILHLPPGAIPAPGNKPMPGPANIRPEATRGPSPTSSGALPSSQSTPAAAAQSRTDGIRPVGPPTVPTNQTPNTNLADRPAAEANLKKVPEQPQKGSNSFEKIMMRLSTLFPNYSRIQMTNFIKEVRASKNGSLTGLSFDDIVACVTKLVKERERQVGQAVAPHGPPDDAGAGGFSGPKAPGTLPSKSSAPLPGPTSAPVKPVSMTPPKPVVGATAHVPASAPIQASTPVPATAPVPTSSNVTYEDDPCVICHDEMTKATKNVSLDCGHTFHHDCIKKWLTGEQSTCPTCRVHALLPEEFPQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DA84</accession>
    <name>A0A7D9DA84_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chaperone dnaK2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A004566</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000335">
        <property type="protein sequence ID" value="CAB3980898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DA84"/>
    <dbReference type="OrthoDB" id="2414723at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051260">
        <property type="term" value="P:protein homooligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18316">
        <property type="entry name" value="BTB_POZ_KCTD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043136">
        <property type="entry name" value="B30.2/SPRY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003131">
        <property type="entry name" value="T1-type_BTB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499:SF136">
        <property type="entry name" value="GH08630P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14499">
        <property type="entry name" value="POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02214">
        <property type="entry name" value="BTB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB3980898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="326" mass="36748" checksum="0D7672F0BAF07907" modified="2020-12-02" version="1">MSGENLLTKFDDLVKRFRNEFNDIIEGERAKMKAELDAYNAEKQRMKAVEVSDNDIIHLNVGGHKLTTKRSTLCQVEGSLLASIFSGRWEDSLERDQDGAIFFDFNPQYFLVILDYLRTKKIATPENPTPLPKVPEDQAKSFNTLLEYLGLSDEIVPAEKVPSEKFNQHSSNVVTLQEGGTVAVHGPNDGHSYVLGENVYQQGIVRLKMKVESFKNNQWMLVGMVKSDVVPPNNNPYSWPGSYGWALGKHGREWKDGSGTNDSTLSNLTREGDTVELVLDCDAAKLSLHLPTGQQFHIEIPKSQTWRLNVDLHYANDKVRIINDNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DAG7</accession>
    <name>A0A7D9DAG7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Palmitoyltransferase</fullName>
            <ecNumber evidence="7">2.3.1.225</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A017817</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-cysteinyl-[protein] + hexadecanoyl-CoA = S-hexadecanoyl-L-cysteinyl-[protein] + CoA</text>
            <dbReference type="Rhea" id="RHEA:36683"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11032"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57379"/>
            <dbReference type="ChEBI" id="CHEBI:74151"/>
            <dbReference type="EC" id="2.3.1.225"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The DHHC domain is required for palmitoyltransferase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the DHHC palmitoyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.225" evidence="7"/>
    <dbReference type="EMBL" id="CACRXK020000127">
        <property type="protein sequence ID" value="CAB3978595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DAG7"/>
    <dbReference type="OrthoDB" id="331948at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019706">
        <property type="term" value="F:protein-cysteine S-palmitoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001594">
        <property type="entry name" value="Palmitoyltrfase_DHHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039859">
        <property type="entry name" value="PFA4/ZDH16/20/ERF2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12246">
        <property type="entry name" value="PALMITOYLTRANSFERASE ZDHHC16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01529">
        <property type="entry name" value="DHHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50216">
        <property type="entry name" value="DHHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="142"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="182"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU079119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3978595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="274" mass="31809" checksum="A2F91D4F2A290A2B" modified="2020-12-02" version="1">MKSSKRWFVWDGLGITCAMFTYFLIGYAEFVVVGVMLLPELSTTAWGLFHSILFTILAILAVVAHMRAMITDPGSIPLGNCTKENIKKLDMKEGEVVFRCTRCECIKTDRAHHCSTCKRCIRKMDHHCPWINNCVGESNQKFFVLFTFYIMVISIYALYLAVRQFFMCQRSDWEDCMYLKVPAAMVCIIFLIFEGILFGLFTLAMFCTQVCSICKDETGIENLKKEKVDKEEEDKSLYENLRDVFGGHFSIKWFSPFSHPEMNRRKSPFAYYEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DGK5</accession>
    <name>A0A7D9DGK5_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A018962</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020000717">
        <property type="protein sequence ID" value="CAB3984290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DGK5"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3984290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="90" mass="9742" checksum="7AC5ACBEAFD5B0CF" modified="2020-12-02" version="1">MEKLSKLYLTVGIELLNPQADHTKSLGQGSKKDGRLHQPDPRTVTGTKMYWVDRGTTALEVDRRMGLAEWAEESVRGAVNQGGTGGGQGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DI39</accession>
    <name>A0A7D9DI39_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Programmed cell death protein 5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">PACLA_8A019818</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">May function in the process of apoptosis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PDCD5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001015">
        <property type="protein sequence ID" value="CAB3986437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DI39"/>
    <dbReference type="OrthoDB" id="10252486at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006915">
        <property type="term" value="P:apoptotic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.140:FF:000001">
        <property type="entry name" value="Programmed cell death protein 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.140">
        <property type="entry name" value="PDCD5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002836">
        <property type="entry name" value="PDCD5-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036883">
        <property type="entry name" value="PDCD5-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10840">
        <property type="entry name" value="PROGRAMMED CELL DEATH PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10840:SF0">
        <property type="entry name" value="PROGRAMMED CELL DEATH PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01984">
        <property type="entry name" value="dsDNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015730">
        <property type="entry name" value="TFAR19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46950">
        <property type="entry name" value="Double-stranded DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0007">Acetylation</keyword>
    <keyword evidence="3" id="KW-0053">Apoptosis</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="14"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="27"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00056824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00071574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CAB3986437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="100" mass="11199" checksum="BFA8F17E677C355E" modified="2020-12-02" version="1">MADDELEAIRAKRMAELQQQMGGGEASQHREQQEEMKRRESEMKNQMLSQILDQQARARLNSIALVKPEKAKMVEGMLIQMASKGQLGGKIGDAQLVSMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DNX6</accession>
    <name>A0A7D9DNX6_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Inositol 1,4,5-trisphosphate receptor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">PACLA_8A021814</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Receptor for inositol 1,4,5-trisphosphate, a second messenger that mediates the release of intracellular calcium.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">The receptor contains a calcium channel in its C-terminal extremity. Its large N-terminal cytoplasmic region has the ligand-binding site in the N-terminus and modulatory sites in the middle portion immediately upstream of the channel region.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the InsP3 receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020001614">
        <property type="protein sequence ID" value="CAB3990170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DNX6"/>
    <dbReference type="OrthoDB" id="76898at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016529">
        <property type="term" value="C:sarcoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030667">
        <property type="term" value="C:secretory granule membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070679">
        <property type="term" value="F:inositol 1,4,5 trisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005220">
        <property type="term" value="F:inositol 1,4,5-trisphosphate-gated calcium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035091">
        <property type="term" value="F:phosphatidylinositol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051209">
        <property type="term" value="P:release of sequestered calcium ion into cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd23277">
        <property type="entry name" value="beta-trefoil_MIR_ITPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.80.10.50:FF:000005">
        <property type="entry name" value="Inositol 1,4,5-trisphosphate receptor type 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.30">
        <property type="entry name" value="IP3 receptor type 1 binding core, RIH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000493">
        <property type="entry name" value="InsP3_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036300">
        <property type="entry name" value="MIR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016093">
        <property type="entry name" value="MIR_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000699">
        <property type="entry name" value="RIH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015925">
        <property type="entry name" value="Ryanodine_IP3_receptor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035910">
        <property type="entry name" value="RyR/IP3R_RIH_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13715:SF102">
        <property type="entry name" value="INOSITOL 1,4,5-TRISPHOSPHATE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13715">
        <property type="entry name" value="RYANODINE RECEPTOR AND IP3 RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02815">
        <property type="entry name" value="MIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01365">
        <property type="entry name" value="RYDR_ITPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00779">
        <property type="entry name" value="INSP3RECEPTR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100909">
        <property type="entry name" value="IP3 receptor type 1 binding core, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82109">
        <property type="entry name" value="MIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0107">Calcium channel</keyword>
    <keyword evidence="1" id="KW-0109">Calcium transport</keyword>
    <keyword evidence="1" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="1" id="KW-0407">Ion channel</keyword>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-1071">Ligand-gated ion channel</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="MIR" evidence="3">
        <location>
            <begin position="1"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="RIH" evidence="2">
        <location>
            <begin position="207"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU368044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CAB3990170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="351" mass="40028" checksum="3634F48A19401377" modified="2020-12-02" version="1">MDEYKKKSFVFLRTTGRTTATSATSSKALWEVEVVQHDPCAGGAAHWNSLLRFKHLATGYYLAAEVDDDNTSDPTRNKLRDNSPVFHLIQVPHSNDISSIFELDPTTMARPDSFVPRSSYVRLRHLCTNTWVHSTTIPIDKEEDKPVMLKIGTASIREDKEAFAIVHVSPSEVRDLDFANDASKVLGEFALHMESGTVTQNDRRFVTKLLTDLAHFITDTQDSDADPLSISCQNPDRDRQKLMREQNILQEIFHVLKTPFHKKDEEANLKPEDLSNPSNAQLRHILRLCYRVLKYAQQDYRKNQTSIEAEADLGTTKEIVETIVNITPMSVQPDCSTLRDLEDFIDQDFNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9DXP8</accession>
    <name>A0A7D9DXP8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A050582</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020002630">
        <property type="protein sequence ID" value="CAB3995268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9DXP8"/>
    <dbReference type="OrthoDB" id="5988809at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB3995268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="167" mass="19127" checksum="F7C422DE2603E593" modified="2020-12-02" version="1">MARRDTTNIAEIVRRVVSSINSLDSSTTNAATLQNMETVSRNPSSRTPGQEVNDAFRLPRTSSTNESQETITPRSRNGRFTPYSGRKKEKKAKEKKVSSSQLDFTLKDVCLLPSPSWKDVPRRAKKQNLVRNNLFVDVWSLDKTWSEEQLRSEILMLFKDHIKTVNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E8X6</accession>
    <name>A0A7D9E8X6_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A012857</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004394">
        <property type="protein sequence ID" value="CAB4002590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E8X6"/>
    <dbReference type="OrthoDB" id="10534951at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101898">
        <property type="entry name" value="NHL repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4002590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="396" mass="44972" checksum="6E702F0FF43644F2" modified="2020-12-02" version="1">MMARILENLKDPEASASDCLQYLKQLHDIGAIREIFSVLINGGMKSRLNKTKRLNNASSVQDMNQVLFEFIKKFAKSSLLTSMLAWPTILLGEKTYRPVVGEDRHQIEKLKRSGMQLMSLTLDTDFTFRGEIYSQNCSVVNSKGDIVALTKGTRTFKVFKRSGESRILCETPREKPASEWYVTAMDIDAEDNLYIITRFRESDDHSWRLKLFIFDKNGNKKLNSALPFHQNSIDAVRMAINKDGKIAILNCDENILYIGDVCVELNSFKVDKIFSFRELPICNHALFSSFDGTIIVAGRETVYIYTENGRLQREIKKPAGYYRFDDSVAIDHVTKRILVKTNVSSGYSLLSFSETGELQDSVCLGTSEWIKYAELKSHPNGPVALVGETRIKLLQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9E9Q9</accession>
    <name>A0A7D9E9Q9_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Corrinoid adenosyltransferase MMAB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP:co(I)rrinoid adenosyltransferase MMAB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">PACLA_8A078764</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="12">A484AB</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Converts cob(I)alamin to adenosylcobalamin (adenosylcob(III)alamin), a coenzyme for methylmalonyl-CoA mutase, therefore participates in the final step of the vitamin B12 conversion. Generates adenosylcobalamin (AdoCbl) and directly delivers the cofactor to MUT in a transfer that is stimulated by ATP-binding to MMAB and gated by MMAA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>cob(I)alamin-[corrinoid adenosyltransferase] + ATP = apo-[corrinoid adenosyltransferase] + adenosylcob(III)alamin + triphosphate</text>
            <dbReference type="Rhea" id="RHEA:56796"/>
            <dbReference type="Rhea" id="RHEA-COMP:14743"/>
            <dbReference type="Rhea" id="RHEA-COMP:14744"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:60488"/>
            <dbReference type="ChEBI" id="CHEBI:83228"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="6">
            <dbReference type="Rhea" id="RHEA:56797"/>
        </physiologicalReaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the Cob(I)alamin adenosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020004251">
        <property type="protein sequence ID" value="CAB4002082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9E9Q9"/>
    <dbReference type="OrthoDB" id="549173at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:corrinoid adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009235">
        <property type="term" value="P:cobalamin metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1200.10:FF:000001">
        <property type="entry name" value="Cob(I)yrinic acid a,c-diamide adenosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1200.10">
        <property type="entry name" value="Cobalamin adenosyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016030">
        <property type="entry name" value="CblAdoTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036451">
        <property type="entry name" value="CblAdoTrfase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029499">
        <property type="entry name" value="PduO-typ"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00636">
        <property type="entry name" value="PduO_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12213">
        <property type="entry name" value="CORRINOID ADENOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12213:SF0">
        <property type="entry name" value="CORRINOID ADENOSYLTRANSFERASE MMAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01923">
        <property type="entry name" value="Cob_adeno_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89028">
        <property type="entry name" value="Cobalamin adenosyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cobalamin adenosyltransferase-like" evidence="11">
        <location>
            <begin position="3"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00051988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00056747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00071654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00075216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU366026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CAB4002082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="189" mass="21546" checksum="7464AF7FB096231D" modified="2020-12-02" version="1">MKIYTKKGDKGYSYNFLGERRQKDDEIFEALGTTDELSSAIGLASEFCADEVHGIVEDLQEVQCILQDVGANIATPRSSTNEKKVGQTHFQLGEVERLETWIDRYHSQLPKLTRFILPSGGKCSASLHLARSICRRAERRITPLVRAGDVDGEVLRYINRLSDFLFTAARYVCHVEGKKERFYEREPKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EBB8</accession>
    <name>A0A7D9EBB8_PARCT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">PACLA_8A063598</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005469">
        <property type="protein sequence ID" value="CAB4006294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EBB8"/>
    <dbReference type="OrthoDB" id="5959788at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CAB4006294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="567" mass="64464" checksum="652B333461B5464E" modified="2020-12-02" version="1">MDSIEKIAHLKEKGLLEAFGIPISSESEGSESETDRELTDEVAYLPGSENPKSANVITTTSIIRNASSDDLLNILRNSDYNWLEFVNLAQENMKELHETAFQDSISDFYHKLPSLGISESDESSSDDIRKIQSPFDVPGQFLITKRRDALHRKATRDAKRKIAEQRFLKRRKSKKVAKILQDCPDIEKTIEDFVERIGAGADTWRQTGVITFDGNKKLEKKATFKRVKEHLEEKYQRSISYGTVVQLCIERNKRRRSALRYHGEAKVIQKKARKGFNIKYNPDSHWSNALYSDTLATHRLHGNLCVKGKETLAIRTDYVNKYPSTLQTTSYNFPGTETTGEIAWRNCMGVVKAPVLFSKNSAQNFADLEAISKNECSKPAFINPTTGTRKEIECVRVDGGYDEGPAHLETIHLIKGADNKAYQDENELLKVFLKGKKGEKEALERDHPEAYSKFQRIWQLCNNHLHKELPVKYVFYLTCCYEKTCIHKICKKGRPEKELTWYPNGPPISFFPIPRPDPERPHGSTCCAECKDGCAGHYLKPQALLQLSDKDTPRADGNCQPPSISIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2020-12-02" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A7D9EFA7</accession>
    <name>A0A7D9EFA7_PARCT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SCAN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">PACLA_8A040338</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Paramuricea clavata</name>
        <name type="common">Red gorgonian</name>
        <name type="synonym">Violescent sea-whip</name>
        <dbReference type="NCBI Taxonomy" id="317549"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Metazoa</taxon>
            <taxon>Cnidaria</taxon>
            <taxon>Anthozoa</taxon>
            <taxon>Octocorallia</taxon>
            <taxon>Malacalcyonacea</taxon>
            <taxon>Plexauridae</taxon>
            <taxon>Paramuricea</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2020-04" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Alioto T."/>
                <person name="Alioto T."/>
                <person name="Gomez Garrido J."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">A484AB</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CACRXK020005332">
        <property type="protein sequence ID" value="CAB4005853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A7D9EFA7"/>
    <dbReference type="OrthoDB" id="2499658at2759"/>
    <dbReference type="Proteomes" id="UP001152795">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057560">
        <property type="entry name" value="Znf_SCAND3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23663">
        <property type="entry name" value="Znf_SCAND3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCAN" evidence="1">
        <location>
            <begin position="373"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CAB4005853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP001152795"/>
        </source>
    </evidence>
    <sequence length="1195" mass="135025" checksum="B7581E2F8D37EC5C" modified="2020-12-02" version="1">MSVVLYVNVDIVSNASEKIDKQVTQLIDRSCISRQKRTVHREINPMGGNFEGLVTFKSFCDEKDKFYVYKINDSRGNRDQPSFVFKTSESKLRMADSMNKDSGDSYLNVEYCFFDRKHKRCYDVVTLTASIYNPLLRKQIPIAIMDTESENTECVTLFWNIFQEALRKCLGKEDKNEKTRLLHGEIAD
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